Citrus Sinensis ID: 027650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVRSTTEKIFQQT
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHcccccccccccccccccccEEEEEccccHHHHHHHHHHHcccccEEEEEEccccccccHHHHccccccccccccccHHHHHHHHcccccccEEEEccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHccccccEEEEcccccccccccHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccHcccccccccEEEEEccccccccEEEEEcccccHHHHHHHHHHHccccEEEEEEEcccccccHHHHcccccccccEEcccHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
matlgcqfhcrmhhisqnvkakrfiscstnppqsniKVIINGAVKEIGRAAVIAVTKARGMEvagaidshsvgedigmvcdmeqpleipvmSDLTMVLGSISQSKARAVVIDftdastvydnVKQATAFGMRSVVYVPHIQLETVSALSAFCdkasmgcliaptlsIGSILLQQAAISAsfhyknveivesrpnarmqlkspttsptlvrsTTEKIFQQT
Flexible Loop (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVesrpnarmqlkspttsptlvrsttekifqqt
Low Complexity Region (SEG)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVRSTTEKIFQQT
Disordered region (IsUnstruct)
***LGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV*******************************
Disordered Region (DISOPRED)
************************************KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVR**********
Disordered Region (DISEMBL)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARM***********************
Disordered Region (DISPRO)
*ATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSP**VRSTTEKI****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVRSTTEKIFQQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q9FJ82	298	Putative 4-hydroxy-tetrah	yes	no	0.895	0.661	0.730	9e-79
B8HRK9	275	4-hydroxy-tetrahydrodipic	yes	no	0.772	0.618	0.439	3e-32
B2J0A9	278	4-hydroxy-tetrahydrodipic	yes	no	0.772	0.611	0.409	8e-31
P72642	275	4-hydroxy-tetrahydrodipic	N/A	no	0.790	0.632	0.412	9e-31
Q8YU19	278	4-hydroxy-tetrahydrodipic	yes	no	0.777	0.615	0.405	2e-30
B7KBV6	275	4-hydroxy-tetrahydrodipic	yes	no	0.772	0.618	0.416	2e-30
Q3MFY8	278	4-hydroxy-tetrahydrodipic	yes	no	0.777	0.615	0.4	3e-30
Q9S3W8	278	4-hydroxy-tetrahydrodipic	N/A	no	0.777	0.615	0.394	3e-29
B7JW41	275	4-hydroxy-tetrahydrodipic	yes	no	0.786	0.629	0.409	4e-29
Q10YI1	275	4-hydroxy-tetrahydrodipic	yes	no	0.790	0.632	0.406	5e-29

>sp|Q9FJ82|DAPB3_ARATH Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1

 Score =  293 bits (749), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 149/204 (73%), Positives = 170/204 (83%), Gaps = 7/204 (3%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1   MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 176

Query: 179 ASFHYKNVEIVESRPNARMQLKSP 202
           ASFHY NVE+VESRPNA   L SP
Sbjct: 177 ASFHYNNVELVESRPNA-ADLPSP 199

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 6

>sp|B8HRK9|DAPB_CYAP4 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dapB PE=3 SV=1

 Score =  138 bits (348), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 76/173 (43%), Positives = 109/173 (63%), Gaps = 3/173 (1%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I VI+NGA  ++GR  V AV +A  + + GA+D +    G+DIG V  +  PLE+P+
Sbjct: 4   QGAIPVIVNGAAGKMGREVVKAVAQAADLTLFGAVDRNPSLQGQDIGEVVGI-GPLEVPL 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L + +Q     V++DFT  ++VYDNV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LADLQSLLVAAAQEPQAGVMVDFTHPNSVYDNVRMAIAYGVRPVVGTTGLSPEQIRDLAT 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPT 203
           F DKASMGCLI P  SIG +LLQQAAI AS ++ +VEI+E   N +    S T
Sbjct: 123 FADKASMGCLIIPNFSIGMVLLQQAAIQASQYFDHVEIIELHHNQKADAPSGT 175

Cyanothece sp. (strain PCC 7425 / ATCC 29141) (taxid: 395961)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B2J0A9|DAPB_NOSP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dapB PE=3 SV=1

 Score =  133 bits (335), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 109/176 (61%), Gaps = 6/176 (3%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---GEDIGMVCDMEQPLEIP 89
           Q+ I VI+NGA  ++GR  + AV +A  + + GAID HS+    +D G +  + +PLE+P
Sbjct: 4   QAPIPVIVNGAAGKMGREVIKAVAQAPDLNLVGAID-HSLEHQDKDAGELAGLSEPLEVP 62

Query: 90  VMSDLTMVLGSISQSKAR--AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSA 147
           + + L  +LG ++  +     V++DFT   +VYDN++ A A+G+R VV    +  E +  
Sbjct: 63  ITNQLEPMLGYVAGDRQSPPGVIVDFTHPDSVYDNIRSAIAYGIRPVVGTTGLSPEQIQD 122

Query: 148 LSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPT 203
           L+ F DKAS GCLI P  SIG +LLQQAAI+AS ++ +VEI+E   N +    S T
Sbjct: 123 LADFADKASTGCLIIPNFSIGMVLLQQAAIAASKYFDHVEIIELHHNQKADAPSGT 178

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P72642|DAPB_SYNY3 4-hydroxy-tetrahydrodipicolinate reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dapB PE=3 SV=1

 Score =  133 bits (335), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/177 (41%), Positives = 109/177 (61%), Gaps = 3/177 (1%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q  I V++NGA  ++GR  + AV +A  +++ GA+D +    G+DIG V  +  PLE+PV
Sbjct: 4   QDLIPVVVNGAAGKMGREVIKAVAQAPDLQLVGAVDHNPSLQGQDIGEVVGIA-PLEVPV 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  VL   +Q K + V++DFT  S VYDNV+ A A+G+R VV    +  + +  L  
Sbjct: 63  LADLQSVLVLATQEKIQGVMVDFTHPSGVYDNVRSAIAYGVRPVVGTTGLSEQQIQDLGD 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPT 207
           F +KAS GCLIAP  +IG +L+QQAA+ A  ++ +VEI+E   N +    S T   T
Sbjct: 123 FAEKASTGCLIAPNFAIGVLLMQQAAVQACQYFDHVEIIELHHNQKADAPSGTAIKT 179

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8YU19|DAPB_NOSS1 4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dapB PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 107/175 (61%), Gaps = 4/175 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V AV +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAVAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPT 203
           + F +KAS GCLI P  SIG +LLQQAA++AS ++ +VEI+E   N +    S T
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGT 178

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7KBV6|DAPB_CYAP7 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7424) GN=dapB PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 105/173 (60%), Gaps = 3/173 (1%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           +S I V++NGA  ++G+  + AV++A  M + GA+D +    GED G V     P+E+P+
Sbjct: 4   ESPIPVVVNGAAGKMGKEVIKAVSQAEDMMLVGAVDLNPKYRGEDAGEVAGC-GPVEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           + DL  VL   +Q K + V++DFT    VYDN++ A A+G+R VV    +  E +  L  
Sbjct: 63  LDDLQSVLVLATQEKVQGVMVDFTHPDGVYDNIRSAIAYGVRPVVGTTGLSGEQIKDLGE 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPT 203
           F +KAS GCLI P  SIG ILLQQAA+ AS ++ +VEI+E   N +    S T
Sbjct: 123 FAEKASTGCLIVPNFSIGMILLQQAAVQASQYFDHVEIIELHHNQKADAPSGT 175

Cyanothece sp. (strain PCC 7424) (taxid: 65393)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q3MFY8|DAPB_ANAVT 4-hydroxy-tetrahydrodipicolinate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dapB PE=3 SV=1

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 107/175 (61%), Gaps = 4/175 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  V A+ +A  + + GAIDS     G+D G +  + +PLE+P+
Sbjct: 4   QAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
            + L  +LG ++  +     V++DFT   +VYDNV+ A A+G+R VV    +    +  L
Sbjct: 64  TNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPT 203
           + F +KAS GCLI P  SIG +LLQQAA++AS ++ +VEI+E   N +    S T
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGT 178

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9S3W8|DAPB_MASLA 4-hydroxy-tetrahydrodipicolinate reductase OS=Mastigocladus laminosus GN=dapB PE=3 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 105/175 (60%), Gaps = 4/175 (2%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV 90
           Q+ I VI+NGA  ++GR  + AV +A  M + GA+D++    G+D G V  + +P E+P+
Sbjct: 4   QTPIPVIVNGAAGKMGRETIKAVVQAADMTLMGAVDTNPEYQGKDAGEVAGLNEPTEVPI 63

Query: 91  MSDLTMVLGSISQSK--ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSAL 148
              L  +L  ++  +     V++DFT    VYDNV+ A A+G+R VV    +  + +  L
Sbjct: 64  TDQLEPILAYVAGERHLQPGVMVDFTHPDAVYDNVRSAIAYGIRPVVGTTGLSSKQIEQL 123

Query: 149 SAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPT 203
           + F +KAS GCLI P  SIG +LLQQAAI+AS ++ +VEI+E   N +    S T
Sbjct: 124 ADFAEKASTGCLIIPNFSIGMVLLQQAAIAASQYFDHVEIIELHHNQKADAPSGT 178

Mastigocladus laminosus (taxid: 83541)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B7JW41|DAPB_CYAP8 4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 8801) GN=dapB PE=3 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/176 (40%), Positives = 106/176 (60%), Gaps = 3/176 (1%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLEIPVM 91
           S I V++NGA  ++GR  V AV +A  M + GA+D +    G+D+G V      LE+P++
Sbjct: 5   SLIPVVVNGAAGKMGREVVKAVAQAEDMMLVGAVDYNPNYRGQDVGEVAGC-GALEVPIV 63

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL  +L   +Q K + V++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ F
Sbjct: 64  DDLQSILVLATQEKIQGVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLTEEQLKDLADF 123

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPT 207
            DKAS GCL+ P  SIG +LLQQAA+ AS ++ +VEI+E   N +    S T   T
Sbjct: 124 ADKASTGCLVIPNFSIGMVLLQQAAVQASQYFDHVEIIELHHNQKADAPSGTAIKT 179

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q10YI1|DAPB_TRIEI 4-hydroxy-tetrahydrodipicolinate reductase OS=Trichodesmium erythraeum (strain IMS101) GN=dapB PE=3 SV=1

 Score =  127 bits (320), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/177 (40%), Positives = 107/177 (60%), Gaps = 3/177 (1%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID--SHSVGEDIGMVCDMEQPLEIPV 90
           Q++  VI+ GA  ++GR  +  V  A  M + GAI+     +G+DIG +     PLE+P+
Sbjct: 4   QTSTPVIVCGAAGKMGREVIKTVANASDMTLLGAIECQPEYIGQDIGELIG-SGPLEVPI 62

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
           ++DL  +L   +Q K  AV++DFT   +VY+NV+ A A+G+R VV    +  E +  L+ 
Sbjct: 63  LNDLQGILVMAAQEKQPAVMVDFTHPDSVYENVRSAIAYGVRPVVGTTGLSQEQIQDLAE 122

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPT 207
           F +KAS+G LI P  SIG +LLQQAAI+AS H+ +VEI+E   N +    S T   T
Sbjct: 123 FAEKASIGTLIIPNFSIGMVLLQQAAIAASKHFDHVEIIELHHNQKADAPSGTAIKT 179

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
224136862	300	predicted protein [Populus trichocarpa]	0.881	0.646	0.788	2e-85
356575925	301	PREDICTED: putative dihydrodipicolinate	0.886	0.647	0.761	4e-81
225455455	302	PREDICTED: putative dihydrodipicolinate	0.904	0.658	0.734	6e-81
255539549	300	dihydrodipicolinate reductase, putative	0.872	0.64	0.755	1e-80
357444055	302	Dihydrodipicolinate reductase [Medicago	0.890	0.649	0.753	2e-80
297741105	303	unnamed protein product [Vitis vinifera]	0.904	0.656	0.730	2e-79
449446063	300	PREDICTED: putative dihydrodipicolinate	0.890	0.653	0.734	1e-78
356535900	301	PREDICTED: putative dihydrodipicolinate	0.890	0.651	0.717	1e-77
15242275	298	putative dihydrodipicolinate reductase 3	0.895	0.661	0.730	5e-77
21536648	297	dihydrodipicolinate reductase-like prote	0.890	0.659	0.730	6e-76

>gi|224136862|ref|XP_002322434.1| predicted protein [Populus trichocarpa] gi|222869430|gb|EEF06561.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/194 (78%), Positives = 170/194 (87%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C FH  +H +S+NV  + FISCS  P QSNIKV+INGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHFHFTVHKVSKNVITRPFISCSMQPSQSNIKVVINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG +CDME+PLEIP+++DLTMVLGSISQSK   VV+DFTD STVY
Sbjct: 61  MEVAGAVDSHFVGEDIGKLCDMEEPLEIPIINDLTMVLGSISQSKETGVVVDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           DNVKQATAFGMRSVVYVP I+L++V ALSAFCDKASMGCLIAPTLSIGSILLQQAAI+AS
Sbjct: 121 DNVKQATAFGMRSVVYVPRIKLDSVGALSAFCDKASMGCLIAPTLSIGSILLQQAAITAS 180

Query: 181 FHYKNVEIVESRPN 194
           FHY N EIVES+ N
Sbjct: 181 FHYNNAEIVESKAN 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575925|ref|XP_003556086.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Glycine max]

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 150/197 (76%), Positives = 171/197 (86%), Gaps = 2/197 (1%)

Query: 1   MATLGCQFHCRMHHISQNV--KAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA+L CQFH      S+NV  + KRFI CS  P Q+NIKV+INGA KEIGRAAV+AVTKA
Sbjct: 1   MASLSCQFHSTSLLNSKNVNRRRKRFIFCSAQPTQNNIKVVINGATKEIGRAAVVAVTKA 60

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGMEVAGA+D+  VGEDIG +C ME+PLEIP+++DLTM+LGSISQSKA  VV+DFTD S+
Sbjct: 61  RGMEVAGAVDTCHVGEDIGKICGMEEPLEIPIINDLTMILGSISQSKAAGVVVDFTDPSS 120

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFCDKASMG L+APTLSIGSILLQQAAIS
Sbjct: 121 VYDNVKQATAFGMKSVVYVPQIKLDTVAALSAFCDKASMGVLVAPTLSIGSILLQQAAIS 180

Query: 179 ASFHYKNVEIVESRPNA 195
           ASFHY NVEIVESR NA
Sbjct: 181 ASFHYSNVEIVESRANA 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455455|ref|XP_002274702.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic [Vitis vinifera] gi|147816661|emb|CAN68386.1| hypothetical protein VITISV_012454 [Vitis vinifera]

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 152/207 (73%), Positives = 173/207 (83%), Gaps = 8/207 (3%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCSTN-PPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSISQSKA  VV+DFTD STVY
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQSKATGVVVDFTDPSTVY 122

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           +NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 123 ENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASMGCLVAPTLSIGSILLQQAAISAS 182

Query: 181 FHYKNVEIVESRPNARMQLKSPTTSPT 207
           FHY NVEIVESRP       +PT  P+
Sbjct: 183 FHYNNVEIVESRP-------TPTDFPS 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539549|ref|XP_002510839.1| dihydrodipicolinate reductase, putative [Ricinus communis] gi|223549954|gb|EEF51441.1| dihydrodipicolinate reductase, putative [Ricinus communis]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 145/192 (75%), Positives = 166/192 (86%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MA L C     +     NVKAK FI CS  P +SNIKV++NGA KEIGRAAVIAVTKARG
Sbjct: 1   MAALSCHLQFTVSKGCSNVKAKPFIFCSAQPAKSNIKVVVNGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+D+H VGED+G++CDME+PLEIPV++DLTMVLGSISQSK   VVIDFTD STVY
Sbjct: 61  MEVAGAVDTHFVGEDVGLLCDMEEPLEIPVINDLTMVLGSISQSKETGVVIDFTDPSTVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           DNVKQATAFGM+S+VYVP I+++T++ALSA C+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 121 DNVKQATAFGMKSIVYVPRIKVDTIAALSALCEKASMGCLVAPTLSIGSILLQQAAISAS 180

Query: 181 FHYKNVEIVESR 192
           FHY NVEIVESR
Sbjct: 181 FHYNNVEIVESR 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444055|ref|XP_003592305.1| Dihydrodipicolinate reductase [Medicago truncatula] gi|355481353|gb|AES62556.1| Dihydrodipicolinate reductase [Medicago truncatula]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 150/199 (75%), Positives = 171/199 (85%), Gaps = 3/199 (1%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR---FISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTK 57
           MA L CQFH   +  SQ VK++     ISCS  P QSNIKV+INGA KEIGRAAV+AVTK
Sbjct: 1   MAALSCQFHSINYLNSQMVKSRSKHSIISCSAQPIQSNIKVVINGAAKEIGRAAVLAVTK 60

Query: 58  ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS 117
           ARGMEVAGAID+  VGEDIG +C M++PLEIP+++DLTMVLGSISQSKA AVV+DFTD S
Sbjct: 61  ARGMEVAGAIDTQHVGEDIGQLCGMDEPLEIPILNDLTMVLGSISQSKATAVVVDFTDPS 120

Query: 118 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI 177
            VYDNVKQATAFGM+SVVYVP I+L+TV+ALSAFC+KASMG L+APTLSIGSILLQQAAI
Sbjct: 121 AVYDNVKQATAFGMKSVVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAI 180

Query: 178 SASFHYKNVEIVESRPNAR 196
           SASFHY+NVEIVES+ NA 
Sbjct: 181 SASFHYRNVEIVESKANAN 199

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741105|emb|CBI31836.3| unnamed protein product [Vitis vinifera]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 152/208 (73%), Positives = 173/208 (83%), Gaps = 9/208 (4%)

Query: 2   ATLGCQFHCRMHHISQNVKAKRFISCSTN-PPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           A L  QFH   +   +NVK K+ +SCS   P QSNIKV+INGA KEIGRAAV+AVTKARG
Sbjct: 3   AALSSQFHPTTYRSIKNVKTKQLVSCSMQQPSQSNIKVVINGAAKEIGRAAVVAVTKARG 62

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ-SKARAVVIDFTDASTV 119
           MEVAGA+DSH VGEDIGMVC ME+ LE+P+++DLTMVLGSISQ SKA  VV+DFTD STV
Sbjct: 63  MEVAGAVDSHLVGEDIGMVCGMEEALEMPIINDLTMVLGSISQQSKATGVVVDFTDPSTV 122

Query: 120 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 179
           Y+NVKQATAFGM SVVYVP I+L+TV+ALSAFC+KASMGCL+APTLSIGSILLQQAAISA
Sbjct: 123 YENVKQATAFGMNSVVYVPRIKLDTVTALSAFCEKASMGCLVAPTLSIGSILLQQAAISA 182

Query: 180 SFHYKNVEIVESRPNARMQLKSPTTSPT 207
           SFHY NVEIVESRP       +PT  P+
Sbjct: 183 SFHYNNVEIVESRP-------TPTDFPS 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446063|ref|XP_004140791.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Cucumis sativus]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 144/196 (73%), Positives = 167/196 (85%)

Query: 1   MATLGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG 60
           MATLGCQF   ++  S+  +    I CS  P Q NIKVIINGA KEIGRAAVIAVTKARG
Sbjct: 1   MATLGCQFPFTVYKNSKKKRPGSSILCSVQPSQGNIKVIINGAAKEIGRAAVIAVTKARG 60

Query: 61  MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY 120
           MEVAGA+DSH VGEDIG VCDME+PLE+P+++DLTMVLGSISQSK   VV+DFT+ S VY
Sbjct: 61  MEVAGAVDSHCVGEDIGKVCDMEEPLELPILNDLTMVLGSISQSKETGVVVDFTEPSKVY 120

Query: 121 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 180
           +NVKQATAFGMRSVVYVP ++++TV+ALS FC+KASMGCL+APTLSIGSILLQQAAISAS
Sbjct: 121 ENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASMGCLVAPTLSIGSILLQQAAISAS 180

Query: 181 FHYKNVEIVESRPNAR 196
           FHY N+EIVES  +A+
Sbjct: 181 FHYSNIEIVESTAHAQ 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535900|ref|XP_003536480.1| PREDICTED: putative dihydrodipicolinate reductase 3, chloroplastic-like [Glycine max]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/198 (71%), Positives = 169/198 (85%), Gaps = 2/198 (1%)

Query: 1   MATLGCQFHCR--MHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA+L CQ H    ++  + N + KR ISCS  P Q+NIKV+INGA KEIG+AAV+AVTKA
Sbjct: 1   MASLSCQVHSTNLLNSKNANSRRKRLISCSAQPTQNNIKVVINGATKEIGKAAVVAVTKA 60

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGMEVAGA+D+  +GEDIG +C ME+ LEIP+++DLTM+LGSISQSKA  VV+DFTD S+
Sbjct: 61  RGMEVAGAVDTCHIGEDIGKICGMEELLEIPIINDLTMILGSISQSKAAGVVVDFTDPSS 120

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VYDNVKQATAFGM+S+VYVP I+L+TV+ALSAFC+KASMG L+APTLSIGSILLQQAAIS
Sbjct: 121 VYDNVKQATAFGMKSIVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAIS 180

Query: 179 ASFHYKNVEIVESRPNAR 196
           ASFHY NVEIVESR NA 
Sbjct: 181 ASFHYSNVEIVESRANAN 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242275|ref|NP_200023.1| putative dihydrodipicolinate reductase 3 [Arabidopsis thaliana] gi|75262543|sp|Q9FJ82.1|DAPB3_ARATH RecName: Full=Putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic; Short=HTPA reductase 3; Flags: Precursor gi|10177745|dbj|BAB11058.1| dihydrodipicolinate reductase-like protein [Arabidopsis thaliana] gi|124301156|gb|ABN04830.1| At5g52100 [Arabidopsis thaliana] gi|332008788|gb|AED96171.1| putative dihydrodipicolinate reductase 3 [Arabidopsis thaliana]

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 149/204 (73%), Positives = 170/204 (83%), Gaps = 7/204 (3%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1   MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPST 116

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 117 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 176

Query: 179 ASFHYKNVEIVESRPNARMQLKSP 202
           ASFHY NVE+VESRPNA   L SP
Sbjct: 177 ASFHYNNVELVESRPNA-ADLPSP 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536648|gb|AAM60980.1| dihydrodipicolinate reductase-like protein [Arabidopsis thaliana]

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 149/204 (73%), Positives = 170/204 (83%), Gaps = 8/204 (3%)

Query: 1   MATLGCQFHCRMHHISQNVKAKR-FISCS-TNPPQSNIKVIINGAVKEIGRAAVIAVTKA 58
           MA + C F      +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKA
Sbjct: 1   MAAVNCHFF----QLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKA 56

Query: 59  RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST 118
           RGME+AGA+D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD ST
Sbjct: 57  RGMELAGAVDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGK-EVVVIDFTDPST 115

Query: 119 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 178
           VY+NVKQATAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I 
Sbjct: 116 VYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIM 175

Query: 179 ASFHYKNVEIVESRPNARMQLKSP 202
           ASFHY NVE+VESRPNA   L SP
Sbjct: 176 ASFHYNNVELVESRPNA-ADLPSP 198

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2173043	298	CRR1 "chlororespiration reduct	0.877	0.647	0.744	2.9e-71
TIGR_CMR|CBU_1709	239	CBU_1709 "dihydrodipicolinate	0.545	0.502	0.296	9.7e-11
TIGR_CMR|CHY_1151	263	CHY_1151 "dihydrodipicolinate	0.754	0.631	0.263	1.8e-10
TIGR_CMR|BA_1555	266	BA_1555 "dihydrodipicolinate r	0.790	0.654	0.254	2.8e-10
UNIPROTKB|P63895	255	dapB "4-hydroxy-tetrahydrodipi	0.768	0.662	0.288	6.4e-09
TIGR_CMR|DET_0971	263	DET_0971 "dihydrodipicolinate	0.75	0.627	0.238	2.3e-07

TAIR|locus:2173043 CRR1 "chlororespiration reduction 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 146/196 (74%), Positives = 167/196 (85%)

Query:     9 HCRMHHISQNVKAKR-FISCSTNPP-QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA 66
             +C    +S+++K  R   SCS + P Q+NIKVIINGA KEIGRAAV+AVTKARGME+AGA
Sbjct:     5 NCHFFQLSRHLKPSRPSFSCSASQPSQNNIKVIINGAAKEIGRAAVVAVTKARGMELAGA 64

Query:    67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQA 126
             +D+H VGEDIG++CDME+PLEIPV+SDLTMVLGSISQ K   VVIDFTD STVY+NVKQA
Sbjct:    65 VDNHFVGEDIGLLCDMEEPLEIPVVSDLTMVLGSISQGKEVGVVIDFTDPSTVYENVKQA 124

Query:   127 TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV 186
             TAFGM+SVVYVP I+ ETVSALSA CDKA+MGCL+APTLSIGSILLQQA I ASFHY NV
Sbjct:   125 TAFGMKSVVYVPRIKPETVSALSALCDKATMGCLVAPTLSIGSILLQQAVIMASFHYNNV 184

Query:   187 EIVESRPNARMQLKSP 202
             E+VESRPNA   L SP
Sbjct:   185 ELVESRPNAA-DLPSP 199

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=IEA;IGI;ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019684 "photosynthesis, light reaction" evidence=IMP

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TIGR_CMR|CBU_1709 CBU_1709 "dihydrodipicolinate reductase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 147 (56.8 bits), Expect = 9.7e-11, Sum P(2) = 9.7e-11
 Identities = 38/128 (29%), Positives = 64/128 (50%)

Query:    88 IPVMSDLTMVLGSISQSK-ARA-------VVIDFTDASTVYDNVKQATAFGMRSVVYVPH 139
             I   SDL +V G+  Q   A+        VVIDFT   +V+ N +     G R V+    
Sbjct:    22 ITAQSDLELVSGTGRQDDLAKTIQTTHADVVIDFTTPQSVFHNAEIIIQSGARPVIGTTG 81

Query:   140 IQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQL 199
             + LE ++ L   C    +G ++AP  S+G++L+ + A  A+ ++ +VEI+E   + ++  
Sbjct:    82 LTLEQIALLDKQCRNKKLGAIVAPNFSVGAVLMMKYAKEAAHYFPDVEIIEMHHSQKIDA 141

Query:   200 KSPTTSPT 207
              S T   T
Sbjct:   142 PSGTAIKT 149

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|CHY_1151 CHY_1151 "dihydrodipicolinate reductase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 157 (60.3 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 45/171 (26%), Positives = 84/171 (49%)

Query:    37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
             ++++ GA  ++GR     +      E+ G +D  +VG+D G +  + + L   V  +L  
Sbjct:     3 RIVMLGACGKMGREISKNLLMHSEHELVGFVDVVNVGQDFGEILGISR-LGKTVEDNLKE 61

Query:    97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156
             V+   +      +V+DF+ AS  + N+  A    +R V        E +  +    +  +
Sbjct:    62 VILKTNPE----IVLDFSRASGAFTNILIALENKVRVVSGTTGFSQEQIKKIEDVSNANN 117

Query:   157 MGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPT 207
             +GC+IAP  SIG++LL + A  A+ ++ +VEI+E   N ++   S T   T
Sbjct:   118 LGCIIAPNFSIGALLLMKLAQMAAKYFSHVEIIEYHHNLKVDAPSGTAIKT 168

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|BA_1555 BA_1555 "dihydrodipicolinate reductase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 156 (60.0 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 46/181 (25%), Positives = 86/181 (47%)

Query:    36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
             +KVII G    +G  AV+ + +     +  A+D    GE I  +  M   L+  + +DL 
Sbjct:     4 MKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPA-LDATIYADLH 62

Query:    96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155
               L  +       V++D T       +V  A   G+RSV+       E +  L+    + 
Sbjct:    63 TCLEEVEAD----VLLDLTTPEVGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEK 118

Query:   156 SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPT--LVRSTT 213
             ++G +IAP  +IG++L+ + +  A+ ++++VE++E   + ++   S T   T  L+R   
Sbjct:   119 AVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKLDAPSGTAVKTVELIRQNR 178

Query:   214 E 214
             E
Sbjct:   179 E 179

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|P63895 dapB "4-hydroxy-tetrahydrodipicolinate reductase" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 147 (56.8 bits), Expect = 6.4e-09, P = 6.4e-09
 Identities = 54/187 (28%), Positives = 83/187 (44%)

Query:    35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSD 93
             +I+VII G   ++G+AA   V     +++   +D   S  E  G          IPV  D
Sbjct:     2 SIRVIIAGFKGKMGQAACQMVLTDPDLDLVAVLDPFESESEWQG----------IPVFKD 51

Query:    94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 153
                + G  +      V +DFT  +  Y+N + A   G   VV       E ++ L  F  
Sbjct:    52 KADLAGFEAD-----VWVDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSR 106

Query:   154 KASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPT--LVRS 211
                +G LIAP  ++G++LL Q A  A+ ++ NVEI+E   + +    S T   T  L+  
Sbjct:   107 AQDLGGLIAPNFALGAVLLMQFATQAAKYFPNVEIIELHHDKKKDAPSGTAIKTAELMAE 166

Query:   212 TTEKIFQ 218
               E I Q
Sbjct:   167 VRESIQQ 173

GO:0005515 "protein binding" evidence=IPI

TIGR_CMR|DET_0971 DET_0971 "dihydrodipicolinate reductase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 136 (52.9 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 41/172 (23%), Positives = 81/172 (47%)

Query:    36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
             IKV+++GA  ++G+  +  + +   +   GA+D  +    + +    +    IP  +DL+
Sbjct:     4 IKVVVHGASGKMGQEVLKTLCQENNLLPVGAVDIRAKSPALPLP---DGSGSIPYSADLS 60

Query:    96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA 155
              VL   SQ+K   V++DFT A      ++ A A  +  V+       E +S +       
Sbjct:    61 SVL---SQTKPD-VMVDFTIAKASMPAIRIAAAHKVNLVIGTTGFSPEEISEIEQLAKTN 116

Query:   156 SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPT 207
              +G ++AP  ++G+I++   A  AS    + E++E   + ++   S T   T
Sbjct:   117 DIGIIVAPNFALGAIIMVHLAQEASRFLASAEVIELHHDKKLDSPSGTALAT 168


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.129   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.49    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  569 (61 KB)
  Total size of DFA:  146 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.92u 0.14s 19.06t   Elapsed:  00:00:01
  Total cpu time:  18.93u 0.14s 19.07t   Elapsed:  00:00:01
  Start:  Sat May 11 02:40:30 2013   End:  Sat May 11 02:40:31 2013

GO:0008839 "4-hydroxy-tetrahydrodipicolinate reductase" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJ82	DAPB3_ARATH	1, ., 3, ., 1, ., 2, 6	0.7303	0.8954	0.6610	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1	LOW CONFIDENCE prediction!
3rd Layer	1.3.1.26	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XV0419	hypothetical protein (301 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	grail3.0035005702	dihydrodipicolinate synthase (EC-4.2.1.52) (363 aa)	•					•	•		0.977
	estExt_fgenesh4_pg.C_LG_II1351	dihydrodipicolinate synthase (EC-4.2.1.52) (366 aa)	•					•	•		0.971
	gw1.IX.2730.1	SubName- Full=Putative uncharacterized protein; (406 aa)						•	•		0.907
	estExt_Genewise1_v1.C_LG_II0973	hypothetical protein (397 aa)						•	•		0.906
	fgenesh4_pm.C_scaffold_57000049	hypothetical protein (397 aa)						•	•		0.905
	fgenesh4_pg.C_LG_VII001193	hypothetical protein (397 aa)						•	•		0.904
	gw1.9962.1.1	hypothetical protein (394 aa)						•	•		0.904
	estExt_Genewise1_v1.C_1700073	dihydrodipicolinate reductase (EC-1.3.1.26) (283 aa)						•	•		0.850
	gw1.XVI.3802.1	diaminopimelate epimerase (EC-5.1.1.7) (281 aa)							•		0.571
	eugene3.00090483	diaminopimelate decarboxylase (EC-4.1.1.20) (482 aa)	•						•		0.523

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
TIGR00036	266	TIGR00036, dapB, dihydrodipicolinate reductase	2e-23
COG0289	266	COG0289, DapB, Dihydrodipicolinate reductase [Amin	2e-16
PRK00048	257	PRK00048, PRK00048, dihydrodipicolinate reductase;	4e-16
pfam01113	122	pfam01113, DapB_N, Dihydrodipicolinate reductase,	2e-11

>gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase

 Score = 94.0 bits (234), Expect = 2e-23
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 12/161 (7%)

Query: 35  NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVM 91
            IKV + GA   +GR  + A   A G+++  A + H     G D G +  +   + +PV 
Sbjct: 1   TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGI-GKVGVPVT 59

Query: 92  SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF 151
            DL       +      V+IDFT    V +++K A   G+R VV       E    L+  
Sbjct: 60  DDLE------AVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADL 113

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNV--EIVE 190
            +KA +  +IAP  SIG  L+ +    A+ +  +   EI+E
Sbjct: 114 AEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEIIE 154

[Amino acid biosynthesis, Aspartate family]. Length = 266

>gnl|CDD|223366 COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]

 Score = 75.0 bits (185), Expect = 2e-16
 Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 14/162 (8%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S IKV + GA   +GR  + AV +A  +E+  A D   S S+G D G +  +   L +PV
Sbjct: 1   SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPV 59

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSA 150
             DL +V           V+IDFT      +N++ A   G   V+       E +  L  
Sbjct: 60  TDDLLLVK------ADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLRE 113

Query: 151 FCDKASMGCLIAPTLSIGSILLQQAAISAS--FHYKNVEIVE 190
             +K  +  +IAP  S+G  LL + A  A+      ++EI+E
Sbjct: 114 AAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEIIE 153

Length = 266

>gnl|CDD|234595 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional

 Score = 74.4 bits (184), Expect = 4e-16
 Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 24/161 (14%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           IKV + GA   +GR  + AV  A  +E+  A+D                   + +  DL 
Sbjct: 2   IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALG------VAITDDLE 55

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSALSAF 151
            VL          V+IDFT      +N++ A   G   V+    +    QL  +      
Sbjct: 56  AVLADAD------VLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEE-QLAELEEA--- 105

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISAS--FHYKNVEIVE 190
                +  +IAP  SIG  LL + A  A+      ++EI+E
Sbjct: 106 --AKKIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIE 144

Length = 257

>gnl|CDD|216304 pfam01113, DapB_N, Dihydrodipicolinate reductase, N-terminus

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 22/135 (16%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPVMS 92
           IKV + GA   +GR  + A+ +A   E+  A+D   S  +G D G +        +PV  
Sbjct: 1   IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPL---GVPVTD 57

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSAL 148
           DL  VL          V+IDFT      +N++ A   G   V+    +    QL  +   
Sbjct: 58  DLEEVLADAD------VLIDFTTPEATLENLELALKHGKPLVIGTTGFTEE-QLAELKEA 110

Query: 149 SAFCDKASMGCLIAP 163
           +       +  +IAP
Sbjct: 111 A-----KKIPIVIAP 120

Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	100.0
TIGR00036	266	dapB dihydrodipicolinate reductase.	100.0
PLN02775	286	Probable dihydrodipicolinate reductase	100.0
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	100.0
PRK00048	257	dihydrodipicolinate reductase; Provisional	100.0
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	100.0
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	99.75
PRK13303	265	L-aspartate dehydrogenase; Provisional	99.73
COG0673	342	MviM Predicted dehydrogenases and related proteins	99.69
PRK11579	346	putative oxidoreductase; Provisional	99.68
PRK13304	265	L-aspartate dehydrogenase; Reviewed	99.6
PRK10206	344	putative oxidoreductase; Provisional	99.6
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	99.55
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	99.51
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	99.5
PRK06270	341	homoserine dehydrogenase; Provisional	99.48
PRK08374	336	homoserine dehydrogenase; Provisional	99.48
PF05173	132	DapB_C: Dihydrodipicolinate reductase, C-terminus;	99.43
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	99.42
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	99.39
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	99.39
PRK06349	426	homoserine dehydrogenase; Provisional	99.38
COG3804	350	Uncharacterized conserved protein related to dihyd	99.33
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	99.29
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	99.25
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	99.25
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	99.2
PRK08300	302	acetaldehyde dehydrogenase; Validated	99.14
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	99.13
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	99.08
PRK06392	326	homoserine dehydrogenase; Provisional	99.08
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	98.98
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.94
PRK06813	346	homoserine dehydrogenase; Validated	98.84
COG0074	293	SucD Succinyl-CoA synthetase, alpha subunit [Energ	98.8
PTZ00187	317	succinyl-CoA synthetase alpha subunit; Provisional	98.78
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	98.76
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.73
COG0460	333	ThrA Homoserine dehydrogenase [Amino acid transpor	98.66
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	98.62
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	98.61
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	98.61
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	98.61
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	98.59
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	98.58
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	98.57
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	98.54
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	98.53
PLN00125	300	Succinyl-CoA ligase [GDP-forming] subunit alpha	98.52
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	98.5
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	98.49
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	98.49
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.48
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	98.48
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	98.47
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.46
PLN02700	377	homoserine dehydrogenase family protein	98.43
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	98.42
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	98.39
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	98.38
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	98.36
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.33
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	98.3
PLN02383	344	aspartate semialdehyde dehydrogenase	98.3
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.3
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.3
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	98.29
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.24
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.23
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	98.22
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	98.21
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.2
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	98.16
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.15
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	98.13
KOG1255	329	consensus Succinyl-CoA synthetase, alpha subunit [	98.13
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	98.1
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.1
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	98.08
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	98.07
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.06
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	98.03
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	98.01
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.01
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.99
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.98
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	97.92
PLN02688	266	pyrroline-5-carboxylate reductase	97.92
TIGR03450	351	mycothiol_INO1 inositol 1-phosphate synthase, Acti	97.89
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.89
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.89
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.88
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.87
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.86
PRK07680	273	late competence protein ComER; Validated	97.86
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.85
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.82
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.81
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.8
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	97.79
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.78
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.74
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	97.73
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.73
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	97.73
PLN02256	304	arogenate dehydrogenase	97.72
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.72
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	97.71
PLN02712	667	arogenate dehydrogenase	97.69
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.69
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.66
COG2344	211	AT-rich DNA-binding protein [General function pred	97.66
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	97.66
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	97.64
PLN02712	667	arogenate dehydrogenase	97.63
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	97.6
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.58
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.53
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	97.51
COG4693	361	PchG Oxidoreductase (NAD-binding), involved in sid	97.51
COG2910	211	Putative NADH-flavin reductase [General function p	97.49
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	97.44
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.43
CHL00194	317	ycf39 Ycf39; Provisional	97.41
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.38
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.38
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	97.37
PRK09414	445	glutamate dehydrogenase; Provisional	97.37
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.35
PRK08655	437	prephenate dehydrogenase; Provisional	97.34
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.34
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.33
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.3
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.29
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.28
PLN02522	608	ATP citrate (pro-S)-lyase	97.27
PRK08618	325	ornithine cyclodeaminase; Validated	97.26
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.24
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.23
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	97.22
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	97.22
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	97.2
PRK07417	279	arogenate dehydrogenase; Reviewed	97.17
KOG0409	327	consensus Predicted dehydrogenase [General functio	97.17
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.15
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.09
PRK08507	275	prephenate dehydrogenase; Validated	97.05
COG3367	339	Uncharacterized conserved protein [Function unknow	97.03
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.02
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	96.98
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	96.97
PRK08818	370	prephenate dehydrogenase; Provisional	96.94
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.93
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.93
PLN02696	454	1-deoxy-D-xylulose-5-phosphate reductoisomerase	96.92
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.91
PLN02858	1378	fructose-bisphosphate aldolase	96.91
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	96.88
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.87
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.84
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.84
PLN02858	1378	fructose-bisphosphate aldolase	96.84
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.83
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.82
PRK06046	326	alanine dehydrogenase; Validated	96.81
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.79
COG1810	224	Uncharacterized protein conserved in archaea [Func	96.79
PRK08605	332	D-lactate dehydrogenase; Validated	96.78
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.76
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.75
KOG0455	364	consensus Homoserine dehydrogenase [Amino acid tra	96.74
PLN03139	386	formate dehydrogenase; Provisional	96.73
KOG4354	340	consensus N-acetyl-gamma-glutamyl-phosphate reduct	96.72
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.71
COG2099	257	CobK Precorrin-6x reductase [Coenzyme metabolism]	96.67
PRK08289	477	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	96.67
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.66
COG1832	140	Predicted CoA-binding protein [General function pr	96.64
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.63
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	96.63
PRK07574	385	formate dehydrogenase; Provisional	96.63
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.62
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.62
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.62
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.61
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.6
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.58
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.56
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.55
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.52
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.5
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.5
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.48
PLN00016	378	RNA-binding protein; Provisional	96.47
PRK08328	231	hypothetical protein; Provisional	96.47
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.47
PLN02427	386	UDP-apiose/xylose synthase	96.43
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.42
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	96.4
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	96.4
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	96.39
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.39
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.37
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.36
TIGR00243	389	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	96.35
KOG2742	367	consensus Predicted oxidoreductase [General functi	96.34
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.33
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	96.32
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.31
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.3
PRK06545	359	prephenate dehydrogenase; Validated	96.29
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.27
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.26
PLN02477	410	glutamate dehydrogenase	96.26
PRK06444	197	prephenate dehydrogenase; Provisional	96.21
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.19
PLN02778	298	3,5-epimerase/4-reductase	96.18
PRK06091	555	membrane protein FdrA; Validated	96.17
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.16
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.15
PLN00106	323	malate dehydrogenase	96.14
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.12
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	96.12
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.11
PRK14030	445	glutamate dehydrogenase; Provisional	96.11
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.1
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.08
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.08
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.06
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.03
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.0
PRK05865	854	hypothetical protein; Provisional	96.0
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	95.94
PRK14031	444	glutamate dehydrogenase; Provisional	95.91
PLN02166	436	dTDP-glucose 4,6-dehydratase	95.88
PRK08291	330	ectoine utilization protein EutC; Validated	95.88
PRK13243	333	glyoxylate reductase; Reviewed	95.87
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.86
PRK12480	330	D-lactate dehydrogenase; Provisional	95.85
PLN03209	576	translocon at the inner envelope of chloroplast su	95.84
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.83
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.82
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.81
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.8
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.79
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.78
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	95.74
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	95.72
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	95.72
PLN02206	442	UDP-glucuronate decarboxylase	95.71
PRK08223	287	hypothetical protein; Validated	95.69
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.67
PRK07340	304	ornithine cyclodeaminase; Validated	95.66
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.65
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.65
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	95.65
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.63
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.59
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.59
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.58
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.57
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.55
TIGR03023	451	WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp	95.54
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	95.54
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.53
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.52
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.52
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.51
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	95.48
PLN02214	342	cinnamoyl-CoA reductase	95.48
PTZ00117	319	malate dehydrogenase; Provisional	95.48
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.47
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	95.45
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.44
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.43
PRK05086	312	malate dehydrogenase; Provisional	95.42
PRK10124	463	putative UDP-glucose lipid carrier transferase; Pr	95.4
PLN02260	668	probable rhamnose biosynthetic enzyme	95.4
PRK12320	699	hypothetical protein; Provisional	95.38
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.36
PRK06141	314	ornithine cyclodeaminase; Validated	95.36
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	95.33
PRK09496	453	trkA potassium transporter peripheral membrane com	95.33
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	95.31
COG1260	362	INO1 Myo-inositol-1-phosphate synthase [Lipid meta	95.3
PRK06436	303	glycerate dehydrogenase; Provisional	95.29
PRK06199	379	ornithine cyclodeaminase; Validated	95.28
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.25
COG0300	265	DltE Short-chain dehydrogenases of various substra	95.23
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.15
KOG2733	423	consensus Uncharacterized membrane protein [Functi	95.14
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	95.14
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.13
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	95.1
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	95.1
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.08
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.08
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	95.06
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.04
PRK06407	301	ornithine cyclodeaminase; Provisional	95.04
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.01
PTZ00325	321	malate dehydrogenase; Provisional	95.0
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	94.98
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	94.98
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	94.97
COG0743	385	Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras	94.97
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	94.96
PF02593	217	dTMP_synthase: Thymidylate synthase; InterPro: IPR	94.95
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	94.94
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	94.93
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	94.91
PTZ00082	321	L-lactate dehydrogenase; Provisional	94.89
TIGR03025	445	EPS_sugtrans exopolysaccharide biosynthesis polypr	94.87
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.86
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.85
COG3268	382	Uncharacterized conserved protein [Function unknow	94.84
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	94.82
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	94.82
PRK10675	338	UDP-galactose-4-epimerase; Provisional	94.81
PLN02650	351	dihydroflavonol-4-reductase	94.79
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	94.74
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.7
PRK08177	225	short chain dehydrogenase; Provisional	94.69
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.67
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.66
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	94.62
PRK05693	274	short chain dehydrogenase; Provisional	94.6
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.57
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.51
PRK06182	273	short chain dehydrogenase; Validated	94.5
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.49
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.49
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.48
PLN02240	352	UDP-glucose 4-epimerase	94.45
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	94.45
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	94.44
PLN00198	338	anthocyanidin reductase; Provisional	94.44
PRK06823	315	ornithine cyclodeaminase; Validated	94.42
PRK14982	340	acyl-ACP reductase; Provisional	94.39
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	94.36
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	94.36
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	94.34
PLN02260	668	probable rhamnose biosynthetic enzyme	94.31
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	94.3
PLN02896	353	cinnamyl-alcohol dehydrogenase	94.29
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	94.19
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	94.17
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.15
PRK06932	314	glycerate dehydrogenase; Provisional	94.15
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	94.15
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	94.15
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	94.13
PRK07411	390	hypothetical protein; Validated	94.12
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.11
PRK05993	277	short chain dehydrogenase; Provisional	94.06
PRK14852	989	hypothetical protein; Provisional	94.05
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	94.05
PLN02494	477	adenosylhomocysteinase	94.02
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	94.0
TIGR03022	456	WbaP_sugtrans Undecaprenyl-phosphate galactose pho	93.99
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	93.98
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.98
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	93.97
PRK05442	326	malate dehydrogenase; Provisional	93.95
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	93.94
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	93.9
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	93.86
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	93.85
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	93.79
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	93.78
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	93.74
PLN02653	340	GDP-mannose 4,6-dehydratase	93.73
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	93.7
PRK08267	260	short chain dehydrogenase; Provisional	93.67
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.67
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	93.67
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.66
PRK06180	277	short chain dehydrogenase; Provisional	93.61
PRK12464	383	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	93.6
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	93.59
PLN00203	519	glutamyl-tRNA reductase	93.54
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	93.53
PLN02572	442	UDP-sulfoquinovose synthase	93.5
PRK14851	679	hypothetical protein; Provisional	93.48
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.48
PRK06487	317	glycerate dehydrogenase; Provisional	93.45
PRK06153	393	hypothetical protein; Provisional	93.43
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.36
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	93.33
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	93.29
TIGR01746	367	Thioester-redct thioester reductase domain. It has	93.2
PRK15204	476	undecaprenyl-phosphate galactose phosphotransferas	93.19
PRK07454	241	short chain dehydrogenase; Provisional	93.18
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.18
PRK10538	248	malonic semialdehyde reductase; Provisional	93.13
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	93.12
PRK11730	715	fadB multifunctional fatty acid oxidation complex	93.11
PRK06179	270	short chain dehydrogenase; Provisional	93.08
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	93.03
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	93.02
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.01
PRK10669	558	putative cation:proton antiport protein; Provision	93.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	92.97
PRK07904	253	short chain dehydrogenase; Provisional	92.93
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.92
COG1042	598	Acyl-CoA synthetase (NDP forming) [Energy producti	92.88
PRK08340	259	glucose-1-dehydrogenase; Provisional	92.83
PRK07825	273	short chain dehydrogenase; Provisional	92.79
PRK03659	601	glutathione-regulated potassium-efflux system prot	92.76
COG2403	449	Predicted GTPase [General function prediction only	92.74
PRK13940	414	glutamyl-tRNA reductase; Provisional	92.71
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	92.66
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	92.64
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	92.62
PLN00112	444	malate dehydrogenase (NADP); Provisional	92.57
PLN02686	367	cinnamoyl-CoA reductase	92.5
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.49
PLN02928	347	oxidoreductase family protein	92.47
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.43
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	92.42
PRK06953	222	short chain dehydrogenase; Provisional	92.4
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	92.37
PRK06988	312	putative formyltransferase; Provisional	92.37
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	92.34
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	92.34
), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844	100	GARS_N: Phosphoribosylglycinamide synthetase, N do	92.33
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	92.33
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	92.17
PLN02602	350	lactate dehydrogenase	92.17
PRK09009	235	C factor cell-cell signaling protein; Provisional	92.15
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	92.15
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	92.13
PRK07023	243	short chain dehydrogenase; Provisional	92.13
PRK08017	256	oxidoreductase; Provisional	92.05
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.93
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	91.92
PRK15076	431	alpha-galactosidase; Provisional	91.86
PRK06395	435	phosphoribosylamine--glycine ligase; Provisional	91.86
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	91.83
PRK03562	621	glutathione-regulated potassium-efflux system prot	91.8
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.76
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.71
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.67
PLN02253	280	xanthoxin dehydrogenase	91.66
PRK06841	255	short chain dehydrogenase; Provisional	91.61
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	91.56
PF13941	457	MutL: MutL protein	91.54
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	91.54
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	91.53
PRK07578	199	short chain dehydrogenase; Provisional	91.53
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	91.5
PRK05866	293	short chain dehydrogenase; Provisional	91.44
KOG2250	514	consensus Glutamate/leucine/phenylalanine/valine d	91.39
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	91.38
PRK07589	346	ornithine cyclodeaminase; Validated	91.37
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	91.36
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	91.35
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	91.34
PRK07877	722	hypothetical protein; Provisional	91.34
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.28
TIGR00877	423	purD phosphoribosylamine--glycine ligase. This enz	91.25
TIGR01319	463	glmL_fam conserved hypothetical protein. This smal	91.22
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.17
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	91.02
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	91.01
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	91.0
KOG4777	361	consensus Aspartate-semialdehyde dehydrogenase [Am	90.9
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.88
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.8
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	90.78
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	90.78
PRK08219	227	short chain dehydrogenase; Provisional	90.77
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	90.77
PRK12938	246	acetyacetyl-CoA reductase; Provisional	90.72
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.67
PRK09186	256	flagellin modification protein A; Provisional	90.58
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	90.58
KOG2774	366	consensus NAD dependent epimerase [General functio	90.57
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	90.56
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	90.49
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	90.44
PLN02306	386	hydroxypyruvate reductase	90.38
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	90.31
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	90.31
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	90.3
PRK05872	296	short chain dehydrogenase; Provisional	90.24
PLN02948	577	phosphoribosylaminoimidazole carboxylase	90.23
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	90.21
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	90.21
PRK08628	258	short chain dehydrogenase; Provisional	90.17
PRK12827	249	short chain dehydrogenase; Provisional	90.06
PRK06057	255	short chain dehydrogenase; Provisional	90.0
PRK06196	315	oxidoreductase; Provisional	89.98
PRK07814	263	short chain dehydrogenase; Provisional	89.95
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.94
PLN02740	381	Alcohol dehydrogenase-like	89.93
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	89.89
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	89.89
PRK12742	237	oxidoreductase; Provisional	89.88

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-51  Score=355.77  Aligned_cols=166  Identities=30%  Similarity=0.395  Sum_probs=154.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec---CCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~---~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      +||||+|+||+||||+.+++++.+.|+++|++++++   ...|.|+++++|.+ ..++++++|+.....      ++||+
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~-~~gv~v~~~~~~~~~------~~DV~   73 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG-LLGVPVTDDLLLVKA------DADVL   73 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc-ccCceeecchhhccc------CCCEE
Confidence            479999999999999999999999999999999996   35689999999886 889999999776654      89999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCC--CCCeEE
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH--YKNVEI  188 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~--~~diEI  188 (220)
                      ||||+|+.++++++.|+++|+++|||||||++++.++|++++++  +|+++|||||+|+||++++++.++++  +|||||
T Consensus        74 IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvnll~~l~~~aak~l~~~DiEI  151 (266)
T COG0289          74 IDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLDDYDIEI  151 (266)
T ss_pred             EECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHHHHHHHHHHHHHHhcCCCCEEe
Confidence            99999999999999999999999999999999999999999999  99999999999999999988777765  469999


Q ss_pred             EeccCCCCCCCCchhhHHHH
Q 027650          189 VESRPNARMQLKSPTTSPTL  208 (220)
Q Consensus       189 iE~HH~~K~DaPSGTA~~~~  208 (220)
                      +|+|||+|+|||||||+.+.
T Consensus       152 iE~HHr~K~DAPSGTAl~la  171 (266)
T COG0289         152 IEAHHRHKKDAPSGTALKLA  171 (266)
T ss_pred             hhhhcccCCCCCcHHHHHHH
Confidence            99999999999999999743

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=100.00  E-value=1.6e-45  Score=323.40  Aligned_cols=170  Identities=29%  Similarity=0.400  Sum_probs=151.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ||||+|+||+|+||+.+++.+.+.|+++|++++|+.   ..+++++++.+.. ..++++++|++++ .     .++||||
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l-~-----~~~DvVI   73 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAV-E-----TDPDVLI   73 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHh-c-----CCCCEEE
Confidence            589999998899999999999999999999999942   2467788877653 4678999999998 4     3799999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCC--CCCeEEE
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH--YKNVEIV  189 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~--~~diEIi  189 (220)
                      |||+|+.+.++++.|+++|+|+|+||||+++++.++|.++|+++|++++++||||+|+|+|.++++.+++.  .||+||+
T Consensus        74 dfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~~~dieI~  153 (266)
T TIGR00036        74 DFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLGDYDIEII  153 (266)
T ss_pred             ECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhccCCCEEee
Confidence            99999999999999999999999999999999999999999999999999999999999998887666553  4799999


Q ss_pred             eccCCCCCCCCchhhHHHHHHh
Q 027650          190 ESRPNARMQLKSPTTSPTLVRS  211 (220)
Q Consensus       190 E~HH~~K~DaPSGTA~~~~~~~  211 (220)
                      |+|||+|+|+|||||+.+...-
T Consensus       154 E~HH~~K~DaPSGTA~~l~~~i  175 (266)
T TIGR00036       154 ELHHRHKKDAPSGTALKTAEMI  175 (266)
T ss_pred             eeccCCCCCCCCHHHHHHHHHH
Confidence            9999999999999999754443

>PLN02775 Probable dihydrodipicolinate reductase

Probab=100.00  E-value=5.4e-44  Score=315.11  Aligned_cols=172  Identities=22%  Similarity=0.330  Sum_probs=147.6

Q ss_pred             ccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCcccc--CCHHHHHhcccc
Q 027650           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVM--SDLTMVLGSISQ  103 (220)
Q Consensus        27 ~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g-~l~g~~~~~gv~v~--~dl~~~l~~~~~  103 (220)
                      +..+|+++.+||+|+||+||||+++++++.+ ++++||+++|+...|.+.+ ++.|.    +++++  +|+++++.... 
T Consensus         3 ~~~~~~~~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~~~~~~dl~~~l~~~~-   76 (286)
T PLN02775          3 STASPPGSAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAGVGVTVEVCGV----EVRLVGPSEREAVLSSVK-   76 (286)
T ss_pred             CcCCCcCCCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEeccccccccccceeccc----eeeeecCccHHHHHHHhh-
Confidence            3466777889999999999999999999999 9999999999866677777 66652    78888  99999996411 


Q ss_pred             CCCcc-EEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCC
Q 027650          104 SKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH  182 (220)
Q Consensus       104 ~~~~D-VVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~  182 (220)
                      ...+| |+||||.|+.+++++++|+++|+|+|+|||||+++|.+++   ++++++|++++||||+|+|||+++++.++++
T Consensus        77 ~~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~---~~~~~i~vv~apNfSiGv~ll~~l~~~aA~~  153 (286)
T PLN02775         77 AEYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKD---VEESGVYAVIAPQMGKQVVAFQAAMEIMAEQ  153 (286)
T ss_pred             ccCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---HhcCCccEEEECcccHHHHHHHHHHHHHHHh
Confidence            12699 9999999999999999999999999999999999876544   4456799999999999999998887766543


Q ss_pred             ------CCCeEEEeccCCCCCCCCchhhHHHH
Q 027650          183 ------YKNVEIVESRPNARMQLKSPTTSPTL  208 (220)
Q Consensus       183 ------~~diEIiE~HH~~K~DaPSGTA~~~~  208 (220)
                            .||+||+|+||++|+|+ ||||+.+.
T Consensus       154 l~~~f~~yDiEIiE~HH~~K~Da-SGTA~~la  184 (286)
T PLN02775        154 FPGAFSGYTLEVVESHQATKLDT-SGTAKAVI  184 (286)
T ss_pred             cccccCCCCEEEEECCCCCCCCC-cHHHHHHH
Confidence                  37899999999999999 99999543

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=100.00  E-value=2e-42  Score=303.95  Aligned_cols=162  Identities=22%  Similarity=0.291  Sum_probs=143.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCCCCCccc------cCCHHHHHhccccCCCcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA  108 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~g~l~g~~~~~gv~v------~~dl~~~l~~~~~~~~~D  108 (220)
                      +||+|+||+|+||+++++++.+ ++++||++ +|+...|.|.+++.|.    ++++      +.+++++++     ..+|
T Consensus         1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g~----~v~v~~~~~~~~~l~~~~~-----~~~d   70 (275)
T TIGR02130         1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAGK----EILLHGPSEREARIGEVFA-----KYPE   70 (275)
T ss_pred             CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEccccccccchhhhccc----ceeeeccccccccHHHHHh-----hcCC
Confidence            5899999999999999999988 89999998 8877678888888763    7888      899999986     3599


Q ss_pred             -EEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCC----
Q 027650          109 -VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY----  183 (220)
Q Consensus       109 -VVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~----  183 (220)
                       |+||||+|+.++++++.|+++|+|+|+|||||++++.++|.+.   .++|++++||||+|++||+++++.+++++    
T Consensus        71 ~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~---~~i~~l~apNfSiGv~ll~~~~~~aA~~~~~~f  147 (275)
T TIGR02130        71 LICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVAD---AKHPAVIAPNMAKQIVAFLAAIEFLAEEFPGAF  147 (275)
T ss_pred             EEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHh---cCCCEEEECcccHHHHHHHHHHHHHHHhhcccc
Confidence             9999999999999999999999999999999999988888554   35999999999999999988887666544    


Q ss_pred             --CCeEEEeccCCCCCCCCchhhHHHHHHhh
Q 027650          184 --KNVEIVESRPNARMQLKSPTTSPTLVRST  212 (220)
Q Consensus       184 --~diEIiE~HH~~K~DaPSGTA~~~~~~~~  212 (220)
                        ||+||+|+||++|+|+ ||||+ .|.+..
T Consensus       148 ~~ydvEIiE~HH~~K~Da-SGTA~-~l~~~i  176 (275)
T TIGR02130       148 AGYKLEVMESHQASKADA-SGTAK-AVIGCF  176 (275)
T ss_pred             CCCCEEEEEcCCCCCCCC-CHHHH-HHHHHH
Confidence              5999999999999999 99999 444444

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=100.00  E-value=1.5e-41  Score=296.79  Aligned_cols=162  Identities=27%  Similarity=0.343  Sum_probs=140.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ||||+|+|++|+||+.+++.+.+.++++|++++|++...  ....    ...+++.++|+++++.      ++|+|||||
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~--~~~~----~~~~i~~~~dl~~ll~------~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP--LVGQ----GALGVAITDDLEAVLA------DADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc--cccc----CCCCccccCCHHHhcc------CCCEEEECC
Confidence            589999999999999999999988999999999975311  1111    1457788999999985      799999999


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCC--CCeEEEecc
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR  192 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~--~diEIiE~H  192 (220)
                      +|+.+.++++.|+++|+|+|+||||+++++.++|.++++  +++++++||||+|++++.++++.+++.+  ||+||+|+|
T Consensus        69 ~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~--~~~v~~s~n~s~g~~~~~~l~~~aa~~l~~~d~ei~E~H  146 (257)
T PRK00048         69 TPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAK--KIPVVIAPNFSIGVNLLMKLAEKAAKYLGDYDIEIIEAH  146 (257)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhc--CCCEEEECcchHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            999999999999999999999999999999999999664  4999999999999999888876666543  699999999


Q ss_pred             CCCCCCCCchhhHHHHHH
Q 027650          193 PNARMQLKSPTTSPTLVR  210 (220)
Q Consensus       193 H~~K~DaPSGTA~~~~~~  210 (220)
                      ||+|+|+|||||+.++..
T Consensus       147 H~~K~DaPSGTA~~l~~~  164 (257)
T PRK00048        147 HRHKVDAPSGTALKLAEA  164 (257)
T ss_pred             CCCCCCCCCHHHHHHHHH
Confidence            999999999999965443

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=100.00  E-value=3e-32  Score=214.06  Aligned_cols=121  Identities=36%  Similarity=0.603  Sum_probs=109.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      |||+|+|++||||+.+++.+.++++++|++++++.   ..|+|++++.|.. +.++++++|++++++      .+||+||
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v~~~l~~~~~------~~DVvID   73 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPVTDDLEELLE------EADVVID   73 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBEBS-HHHHTT------H-SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-CcccccchhHHHhcc------cCCEEEE
Confidence            79999999999999999999999999999999964   4799999999987 889999999999997      5999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      ||.|+...++++.|+++|+|+|+|||||+++|.++|++++++  +|++++|||
T Consensus        74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vl~a~Nf  124 (124)
T PF01113_consen   74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAKK--IPVLIAPNF  124 (124)
T ss_dssp             ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTT--SEEEE-SSS
T ss_pred             cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEeCCC
Confidence            999999999999999999999999999999999999999999  999999998

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=99.75  E-value=2.4e-17  Score=126.42  Aligned_cols=116  Identities=27%  Similarity=0.338  Sum_probs=101.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |||+|+|+ |++|+.+.+.+... +++++++++|++.  .....+.   +.++++.|+|++++++.    .++|+|+.+|
T Consensus         1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~I~t   70 (120)
T PF01408_consen    1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDP--ERAEAFA---EKYGIPVYTDLEELLAD----EDVDAVIIAT   70 (120)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTSEEESSHHHHHHH----TTESEEEEES
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCH--HHHHHHH---HHhcccchhHHHHHHHh----hcCCEEEEec
Confidence            69999997 99999999988877 9999999999742  2233332   25678899999999985    5899999999


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEE
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI  161 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vvi  161 (220)
                      ++..+.+.+..++++|+|+++++| +.+.++.++|.++++++|+.+.+
T Consensus        71 p~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V  118 (120)
T PF01408_consen   71 PPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMV  118 (120)
T ss_dssp             SGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred             CCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence            999999999999999999999999 78999999999999999988765

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=99.73  E-value=6.4e-17  Score=142.09  Aligned_cols=128  Identities=13%  Similarity=0.111  Sum_probs=103.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ||||+|+|+ |+||+.+++.+...++++|+++++++..........+    .++++++|++++ .     .++|+||++|
T Consensus         1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~-----~~~DvVve~t   69 (265)
T PRK13303          1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALG----EAVRVVSSVDAL-P-----QRPDLVVECA   69 (265)
T ss_pred             CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhc----cCCeeeCCHHHh-c-----cCCCEEEECC
Confidence            689999998 9999999999999999999999976422222222221    257889999988 5     4899999999


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCCC-CC-HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHH
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTtG-~~-~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~  173 (220)
                      ++..+.+++..++++|+|+|+++|+ ++ ++..++|.++|+++|..+++.|.+--|..+++
T Consensus        70 ~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~  130 (265)
T PRK13303         70 GHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALA  130 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHH
Confidence            9999999999999999999999997 55 55568899999999999999666555544444

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=99.69  E-value=9.3e-16  Score=136.63  Aligned_cols=153  Identities=20%  Similarity=0.173  Sum_probs=121.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      +++||||+|+.|.+++.++..+.+.++ +++++++|++.  ..+..+.   +.++++ .|+|++++++.    .++|+|+
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~iD~V~   72 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDP--ERAEAFA---EEFGIAKAYTDLEELLAD----PDIDAVY   72 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEE
Confidence            579999999844666779999998888 79999999753  2233333   256664 89999999985    4689999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEE
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI  188 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEI  188 (220)
                      ..|++..+.+.+..|+++|+||+|++| +.+.+|.++|.++|+++|+.+.+.-|  |...+.-++++..  .+..-++..
T Consensus        73 Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~--~g~lG~v~~  150 (342)
T COG0673          73 IATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELID--SGALGEVVS  150 (342)
T ss_pred             EcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHh--cCCcCceEE
Confidence            999999999999999999999999999 89999999999999999999998766  7777766666653  224557777


Q ss_pred             EeccCCCCC
Q 027650          189 VESRPNARM  197 (220)
Q Consensus       189 iE~HH~~K~  197 (220)
                      ++.+.....
T Consensus       151 ~~~~~~~~~  159 (342)
T COG0673         151 VQASFSRDR  159 (342)
T ss_pred             EEEEeeccc
Confidence            776655543

>PRK11579 putative oxidoreductase; Provisional

Probab=99.68  E-value=1.9e-15  Score=136.64  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=117.4

Q ss_pred             CCceEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .++||||+|+ |+||+ .+++.+...++++|++++|++.  ..+.+     .-.++++|+|++++++.    .++|+|+.
T Consensus         3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~ell~~----~~vD~V~I   70 (346)
T PRK11579          3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDA--TKVKA-----DWPTVTVVSEPQHLFND----PNIDLIVI   70 (346)
T ss_pred             CcceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCH--HHHHh-----hCCCCceeCCHHHHhcC----CCCCEEEE
Confidence            4689999997 99998 5788888889999999999752  11211     01245679999999974    57999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      +|++..+.+.+..|+++|+||+|++| ..+.++.++|.++|+++|+.+.+..|  |.....-++++.+  .+...++..+
T Consensus        71 ~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~--~g~iG~i~~~  148 (346)
T PRK11579         71 PTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLA--EGVLGEVAYF  148 (346)
T ss_pred             cCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHh--cCCCCCeEEE
Confidence            99999999999999999999999999 78999999999999999999887655  7888877777763  2345566666


Q ss_pred             ecc
Q 027650          190 ESR  192 (220)
Q Consensus       190 E~H  192 (220)
                      +.|
T Consensus       149 ~~~  151 (346)
T PRK11579        149 ESH  151 (346)
T ss_pred             EEE
Confidence            665

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=99.60  E-value=1.4e-14  Score=127.27  Aligned_cols=126  Identities=13%  Similarity=0.122  Sum_probs=103.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ||||+|+|+ |+||+.+++.+.+.+ ++++++++|++.  ..+.++..   ..+++.++|+++++.      ++|+|+++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~--~~a~~~a~---~~~~~~~~~~~ell~------~~DvVvi~   68 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNL--EKAENLAS---KTGAKACLSIDELVE------DVDLVVEC   68 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCH--HHHHHHHH---hcCCeeECCHHHHhc------CCCEEEEc
Confidence            689999997 999999999988764 899999999752  22333332   346778999999984      79999999


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCCCC--CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTtG~--~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                      ++|+.+.+++..++++|+++++.++|.  +++..++|.++|+++|+.+++.+.+-.|...+
T Consensus        69 a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i  129 (265)
T PRK13304         69 ASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGI  129 (265)
T ss_pred             CChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHH
Confidence            999999999999999999999998863  78888999999999999999966555555444

>PRK10206 putative oxidoreductase; Provisional

Probab=99.60  E-value=2.6e-14  Score=129.59  Aligned_cols=145  Identities=20%  Similarity=0.138  Sum_probs=113.7

Q ss_pred             CceEEEEcCCCHHH-HHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIG-RAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG-~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |+||||+|+ |+++ +.++..+.. .++++|++++|++..   ..+...   .+ ++++|+|++++++.    .++|+|+
T Consensus         1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~~---~~~~~~---~~~~~~~~~~~~ell~~----~~iD~V~   69 (344)
T PRK10206          1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAK---PEEQAP---IYSHIHFTSDLDEVLND----PDVKLVV   69 (344)
T ss_pred             CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCChh---HHHHHH---hcCCCcccCCHHHHhcC----CCCCEEE
Confidence            689999997 9976 457776654 478999999997521   112221   33 36789999999974    5899999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEE
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI  188 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEI  188 (220)
                      .+|++..+.+.+..|+++|+||+|++| ..+.++.++|.++|+++|+.+.+..|  |...+.-++++.+.  +..-++-.
T Consensus        70 I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~--g~iG~i~~  147 (344)
T PRK10206         70 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVE  147 (344)
T ss_pred             EeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHc--CCCCCeEE
Confidence            999999999999999999999999999 78999999999999999999988776  77777667776632  23445555


Q ss_pred             Eecc
Q 027650          189 VESR  192 (220)
Q Consensus       189 iE~H  192 (220)
                      ++.+
T Consensus       148 i~~~  151 (344)
T PRK10206        148 VESH  151 (344)
T ss_pred             EEEE
Confidence            5554

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=99.55  E-value=9.2e-14  Score=122.57  Aligned_cols=125  Identities=17%  Similarity=0.202  Sum_probs=101.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCc-cccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ++||+|+|+ |+||+.+++.+.. .++++|++++|++.  ....++.   ..+++ ..++++++++.      ++|+|++
T Consensus         6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~--~~a~~~a---~~~g~~~~~~~~eell~------~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDP--QRHADFI---WGLRRPPPVVPLDQLAT------HADIVVE   73 (271)
T ss_pred             eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCH--HHHHHHH---HhcCCCcccCCHHHHhc------CCCEEEE
Confidence            389999997 9999999999987 48999999999742  2222333   13343 56889999985      6999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                      +++++.+.+++..++++|+++++.+++ ..++.++|.++++++|.++++.++|--|...+
T Consensus        74 ~tp~~~h~e~~~~aL~aGk~Vi~~s~g-al~~~~~L~~~A~~~g~~l~v~sGa~~g~d~l  132 (271)
T PRK13302         74 AAPASVLRAIVEPVLAAGKKAIVLSVG-ALLRNEDLIDLARQNGGQIIVPTGALLGLDAV  132 (271)
T ss_pred             CCCcHHHHHHHHHHHHcCCcEEEecch-hHHhHHHHHHHHHHcCCEEEEcchHHHhHHHH
Confidence            999999999999999999999998765 22466899999999999999988877776443

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=99.51  E-value=2.9e-13  Score=123.22  Aligned_cols=131  Identities=15%  Similarity=0.158  Sum_probs=103.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .++||+|+|+  +||+.+++.+.+.+ +++|+|++|++.  +.+.+++   +.+|++.|+|+++++++    .++|+|..
T Consensus         2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~--erA~~~A---~~~gi~~y~~~eell~d----~Di~~V~i   70 (343)
T TIGR01761         2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPDD----IDIACVVV   70 (343)
T ss_pred             CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCH--HHHHHHH---HHhCCCccCCHHHHhcC----CCEEEEEe
Confidence            5689999997  68999999999888 899999999742  2333444   35788899999999962    23444443


Q ss_pred             cc--CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHH
Q 027650          113 FT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (220)
Q Consensus       113 fT--~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~  177 (220)
                      -|  ++..+.+.++.|+++|+||+|++|=. .+|.++|.++|+++|+.+.+ ..|...+..++++..
T Consensus        71 pt~~P~~~H~e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~v-~~f~p~~~~vr~~i~  135 (343)
T TIGR01761        71 RSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYLV-NTFYPHLPAVRRFIE  135 (343)
T ss_pred             CCCCCCccHHHHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEEE-EecCHHHHHHHHHHH
Confidence            22  35688999999999999999999943 68999999999999999887 568888877777653

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=99.50  E-value=4.1e-13  Score=121.22  Aligned_cols=155  Identities=13%  Similarity=0.072  Sum_probs=112.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ++||+|+|+ |+||+.+++.+.+.|++||+|++|+...+ .++.      ..++..+.|.++++.      ++|||+.+|
T Consensus         3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~~-~~~~------~~~v~~~~d~~e~l~------~iDVViIct   68 (324)
T TIGR01921         3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGAE-TLDT------ETPVYAVADDEKHLD------DVDVLILCM   68 (324)
T ss_pred             CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcHH-HHhh------cCCccccCCHHHhcc------CCCEEEEcC
Confidence            589999997 99999999999999999999999975211 1111      233444556666653      799999888


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCCC-C-CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH-HHHhcCCCCCe----E
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-AISASFHYKNV----E  187 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTtG-~-~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~-a~~~~~~~~di----E  187 (220)
                      ++..+.+.+..++++|+|+|...+- . .++..++|+++|+++|-..+++..|.+|..-+.++ ...+.+...+.    .
T Consensus        69 Ps~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~  148 (324)
T TIGR01921        69 GSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGP  148 (324)
T ss_pred             CCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCC
Confidence            8899999999999999999998762 2 36788999999998666666678888998755444 33343322111    2


Q ss_pred             EEeccCCCCCCCCchh
Q 027650          188 IVESRPNARMQLKSPT  203 (220)
Q Consensus       188 IiE~HH~~K~DaPSGT  203 (220)
                      -+..+|..-.|.=.|-
T Consensus       149 g~s~ghs~a~~~~~Gv  164 (324)
T TIGR01921       149 GLSQGHSDAVRRIDGV  164 (324)
T ss_pred             CcCchhhhhhcccCCc
Confidence            3555666555555554

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK06270 homoserine dehydrogenase; Provisional

Probab=99.48  E-value=5.4e-13  Score=121.18  Aligned_cols=163  Identities=15%  Similarity=0.168  Sum_probs=113.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCCCCCC-cc------ccC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IP------VMS   92 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~-----~~g~d~g~l~g~~~~~g-v~------v~~   92 (220)
                      +++||+|+|+ |.||+.+++.+.+.+         +++|++++|++     ..|.+.+++.......+ +.      .+.
T Consensus         1 m~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~   79 (341)
T PRK06270          1 MEMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEI   79 (341)
T ss_pred             CeEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccC
Confidence            3589999997 999999999987664         79999999962     23444444332211222 11      234


Q ss_pred             CHHHHHhccccCCCccEEEEccCchh-----HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650           93 DLTMVLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~  167 (220)
                      |+++++..    .++|||||+|++..     ..++++.++++|+|||+++.+......++|.++|+++|+.+.+-....-
T Consensus        80 d~~ell~~----~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~  155 (341)
T PRK06270         80 SGLEVIRS----VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGG  155 (341)
T ss_pred             CHHHHhhc----cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeee
Confidence            88998864    57999999997644     3789999999999999987665555678899999999999998766666


Q ss_pred             HHHHHHHHHHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHH
Q 027650          168 GSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVR  210 (220)
Q Consensus       168 Gv~ll~~~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~  210 (220)
                      |.-++..+-..+.  ...|.=+|-       .-|||..-.|-|
T Consensus       156 glPii~~l~~~l~--g~~I~~I~G-------IlnGT~nyIl~~  189 (341)
T PRK06270        156 AMPIINLAKETLA--GNDIKSIKG-------ILNGTTNYILTR  189 (341)
T ss_pred             chhHHHHHHhhcc--cCceEEEEE-------EEeCcHHHHHHH
Confidence            6666655543333  234544443       346666644443

>PRK08374 homoserine dehydrogenase; Provisional

Probab=99.48  E-value=4.4e-13  Score=121.64  Aligned_cols=169  Identities=17%  Similarity=0.172  Sum_probs=120.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecC-----CCCcchhhhhcCCCCCC-cccc--------
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSH-----SVGEDIGMVCDMEQPLE-IPVM--------   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~-----~~g~d~g~l~g~~~~~g-v~v~--------   91 (220)
                      ++||+|.|+ |.+|+.+++.+.+.         -+++|+++.|+.     ..|-+..++.......+ +..+        
T Consensus         2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~   80 (336)
T PRK08374          2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN   80 (336)
T ss_pred             eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence            589999997 99999999988763         248999999853     23444444332111111 0111        


Q ss_pred             CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH
Q 027650           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (220)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l  171 (220)
                      .++++++..    .++|||||||.++.+.++...++++|+|||++++|.-....++|.++|+++++++++++|++.|+-+
T Consensus        81 ~~~~ell~~----~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi  156 (336)
T PRK08374         81 FSPEEIVEE----IDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI  156 (336)
T ss_pred             CCHHHHHhc----CCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence            167788753    4799999999999999999999999999999999743355678999999999999999999999988


Q ss_pred             HHHHHHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHHhhhHHhh
Q 027650          172 LQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVRSTTEKIF  217 (220)
Q Consensus       172 l~~~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~~~~~~~~  217 (220)
                      +.-+-..++  ..+|.=+|-       ..|||..-.|-+-.+...|
T Consensus       157 i~~l~~~l~--g~~i~~i~G-------IlnGT~nyIl~~m~~g~~f  193 (336)
T PRK08374        157 IGLLRENLL--GDTVKRIEA-------VVNATTTFILTRMEQGKTF  193 (336)
T ss_pred             hHHHHhhcc--ccceEEEEE-------EEechHHHHHHHhhCCCCH
Confidence            765544443  345655554       4677777655544333333

>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase

Probab=99.43  E-value=1.2e-13  Score=110.05  Aligned_cols=45  Identities=24%  Similarity=0.135  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhcCC---CCCeEEEeccCCCCCCCCchhhHHHHHHhh
Q 027650          168 GSILLQQAAISASFH---YKNVEIVESRPNARMQLKSPTTSPTLVRST  212 (220)
Q Consensus       168 Gv~ll~~~a~~~~~~---~~diEIiE~HH~~K~DaPSGTA~~~~~~~~  212 (220)
                      |+|||+++++.+++.   .||+||+|+||++|+|+|||||+.++..-.
T Consensus         1 Gv~ll~~l~~~aa~~l~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~   48 (132)
T PF05173_consen    1 GVNLLMKLAKQAAKLLPNGYDIEIIESHHRQKKDAPSGTALMLAESIA   48 (132)
T ss_dssp             HHHHHHHHHHHHHHHTTTTSEEEEEEEE-TT-SSSS-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCEEEEEcccCCCCCCCCHHHHHHHHHHH
Confidence            889988877666543   478999999999999999999996444333

Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.42  E-value=6.7e-12  Score=113.24  Aligned_cols=154  Identities=15%  Similarity=0.044  Sum_probs=125.6

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCC---CccccCCHHHHHhccccCCC
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPL---EIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~---gv~v~~dl~~~l~~~~~~~~  106 (220)
                      ++..+|+||.|| |+|++..++++...|  +++++++.|+.  ...+-+++-   +.   +..+|.++|+++.+    ..
T Consensus         3 ~s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s--~~~A~~fAq---~~~~~~~k~y~syEeLakd----~~   72 (351)
T KOG2741|consen    3 DSATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPS--LERAKEFAQ---RHNIPNPKAYGSYEELAKD----PE   72 (351)
T ss_pred             CCceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEeccc--HHHHHHHHH---hcCCCCCccccCHHHHhcC----CC
Confidence            455689999998 999999999999888  99999999983  234444442   23   44679999999975    67


Q ss_pred             ccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEE--cCCCcHHHHHHHHHHHHhcCCC
Q 027650          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI--APTLSIGSILLQQAAISASFHY  183 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vvi--apNfS~Gv~ll~~~a~~~~~~~  183 (220)
                      +|||..-++...+++.+..++++||||+|++| ..+.+|.++|-++|+++|+-+..  -..|++-+.-++.+..  .+.+
T Consensus        73 vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~--~~~~  150 (351)
T KOG2741|consen   73 VDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS--SGVL  150 (351)
T ss_pred             cCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHh--cccc
Confidence            89988666777889999999999999999999 89999999999999999977763  3778888877887774  5567


Q ss_pred             CCeEEEeccCCCCC
Q 027650          184 KNVEIVESRPNARM  197 (220)
Q Consensus       184 ~diEIiE~HH~~K~  197 (220)
                      -|+.-++.-|+.-.
T Consensus       151 Gdvk~v~~~~~f~~  164 (351)
T KOG2741|consen  151 GDVKSVEVEFGFPF  164 (351)
T ss_pred             ccceEEEEecCCCc
Confidence            78888888776644

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=99.39  E-value=9.6e-12  Score=109.37  Aligned_cols=126  Identities=10%  Similarity=0.131  Sum_probs=101.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .+||+|+|| |.||+.+++.+...  ++++|+++.++..  .....+.+     .+++++|+++++.     .++|+||+
T Consensus         2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~--~~~~~~~~-----~~~~~~~l~~ll~-----~~~DlVVE   68 (267)
T PRK13301          2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAA--DLPPALAG-----RVALLDGLPGLLA-----WRPDLVVE   68 (267)
T ss_pred             ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCH--HHHHHhhc-----cCcccCCHHHHhh-----cCCCEEEE
Confidence            579999998 99999999998753  4599999988742  12223332     2678999999876     38999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCCC-C-CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHH
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTtG-~-~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~  173 (220)
                      +..++++.++...+|++|+++++..+| | +++..++|.++|+++|..+++.++---|.-.+.
T Consensus        69 ~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD~l~  131 (267)
T PRK13301         69 AAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYLQ  131 (267)
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHHHHH
Confidence            999999999999999999999999986 3 677888999999999999999666333443344

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=99.39  E-value=1.4e-11  Score=125.17  Aligned_cols=137  Identities=20%  Similarity=0.116  Sum_probs=106.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcE------------EEEEEecCCCCcchhhhhcC-CCCCCccc-cCCHHHHHhc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGME------------VAGAIDSHSVGEDIGMVCDM-EQPLEIPV-MSDLTMVLGS  100 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e------------Lvg~vd~~~~g~d~g~l~g~-~~~~gv~v-~~dl~~~l~~  100 (220)
                      |.||+|+|| |+||+.+++.+...++.+            +|.++|+..  .++.++... .....+.+ +.|.+++.+.
T Consensus       569 ~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~--~~a~~la~~~~~~~~v~lDv~D~e~L~~~  645 (1042)
T PLN02819        569 SQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYL--KDAKETVEGIENAEAVQLDVSDSESLLKY  645 (1042)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCH--HHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence            669999998 999999999999988877            788888642  223333210 00011444 6787777652


Q ss_pred             cccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH--HHHHHHH
Q 027650          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL--LQQAAIS  178 (220)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l--l~~~a~~  178 (220)
                      +   .++|+||.++++..+.+.++.|+++|+|+|+.+  ++.++..+|.+.|+++|+.++..-+|..|+.-  .+++...
T Consensus       646 v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~~lA~~~Id~  720 (1042)
T PLN02819        646 V---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEMGLDPGIDHMMAMKMIDD  720 (1042)
T ss_pred             h---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECCccCHHHHHHHHHHHHHh
Confidence            1   269999999999999999999999999999877  88889999999999999999999999999964  4555544


Q ss_pred             h
Q 027650          179 A  179 (220)
Q Consensus       179 ~  179 (220)
                      .
T Consensus       721 ~  721 (1042)
T PLN02819        721 A  721 (1042)
T ss_pred             h
Confidence            4

>PRK06349 homoserine dehydrogenase; Provisional

Probab=99.38  E-value=4.5e-12  Score=118.35  Aligned_cols=157  Identities=12%  Similarity=0.095  Sum_probs=115.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (220)
                      ++||+|+|+ |.+|+.+++.+.+++         +++|+++++++.. + ... .   ...+..+++|+++++..    .
T Consensus         3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~-~-~~~-~---~~~~~~~~~d~~~ll~d----~   71 (426)
T PRK06349          3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE-K-DRG-V---DLPGILLTTDPEELVND----P   71 (426)
T ss_pred             eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh-h-ccC-C---CCcccceeCCHHHHhhC----C
Confidence            589999997 999999999886653         7899999997421 1 111 1   12245678999999974    5


Q ss_pred             CccEEEEccCc-hhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCC
Q 027650          106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYK  184 (220)
Q Consensus       106 ~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~  184 (220)
                      ++|+||+.|.+ +.+.++++.|+++|+|||+..+++..++.++|.++|+++|+.+.+.+...-|+-++..+-..+..  .
T Consensus        72 ~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~l~~--~  149 (426)
T PRK06349         72 DIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREGLAA--N  149 (426)
T ss_pred             CCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhhccc--C
Confidence            79999999854 66789999999999999998778888899999999999999999887777666666555444432  2


Q ss_pred             CeEEEeccCCCCCCCCchhhHHHHHHh
Q 027650          185 NVEIVESRPNARMQLKSPTTSPTLVRS  211 (220)
Q Consensus       185 diEIiE~HH~~K~DaPSGTA~~~~~~~  211 (220)
                      .|.=++       -.-+||.+-.|-+-
T Consensus       150 ~I~~I~-------GIlnGT~nyIl~~m  169 (426)
T PRK06349        150 RITRVM-------GIVNGTTNYILTKM  169 (426)
T ss_pred             CeeEEE-------EEEeCcHHHHHhhh
Confidence            333232       24577777655444

>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]

Probab=99.33  E-value=1.4e-11  Score=108.65  Aligned_cols=152  Identities=19%  Similarity=0.178  Sum_probs=112.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE-
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI-  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI-  111 (220)
                      .|+|.++| +|..|...+|.+.++|+++|||++++  .+.|+|++++.|+. .+||...++++..++.     .+|.++ 
T Consensus         2 ~~~vvqyG-tG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~-dlgV~a~~~~~avlAt-----l~~~~~y   74 (350)
T COG3804           2 SLRVVQYG-TGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLP-DLGVIATNSIDAVLAT-----LADAVIY   74 (350)
T ss_pred             CceeEEec-cchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCC-CceeEeecccccceec-----cccceee
Confidence            47999999 69999999999999999999999996  56799999999997 4899999999999873     566555 


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC------CCCHHHHHHHHHHhhhcCce-EE---EcCCCcHHHHHHHHHHHHhcC
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP------HIQLETVSALSAFCDKASMG-CL---IAPTLSIGSILLQQAAISASF  181 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt------G~~~e~~~~L~~aA~~~~v~-vv---iapNfS~Gv~ll~~~a~~~~~  181 (220)
                      +.-.|  ..+..+.+|++|+|||+--+      +..+|..+++.+.|.++|.. +.   |-|.|+.-. +.+    .++.
T Consensus        75 ~~~~~--~~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gtGI~pGF~~dl-lpm----lLsg  147 (350)
T COG3804          75 APLLP--SVDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGTGIGPGFVTDL-LPM----LLSG  147 (350)
T ss_pred             ecccc--hHHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEecccCccHHHHH-HHH----HHcc
Confidence            33344  38889999999999996422      34789999999999998884 44   446665544 112    1233


Q ss_pred             CCCCeE---EEeccCCCCCCCC
Q 027650          182 HYKNVE---IVESRPNARMQLK  200 (220)
Q Consensus       182 ~~~diE---IiE~HH~~K~DaP  200 (220)
                      .+..+|   -.|.-...+.|+|
T Consensus       148 pcteve~ir~~e~~d~~~y~e~  169 (350)
T COG3804         148 PCTEVEFIRSEEFSDLRSYGEP  169 (350)
T ss_pred             cccceEEEeeeehhhHhhcCCc
Confidence            333333   3455555566655

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=99.29  E-value=6.9e-12  Score=96.64  Aligned_cols=110  Identities=17%  Similarity=0.209  Sum_probs=83.6

Q ss_pred             cCCCHHHHHHHHHHHhcC---CcEEEEEEecC-CCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCch
Q 027650           42 GAVKEIGRAAVIAVTKAR---GMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS  117 (220)
Q Consensus        42 Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~-~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~  117 (220)
                      |+ |.||+.+++.+.+.+   +++|+++++++ ....+....     ..+...+.+++++++.    .++|+|||+|.++
T Consensus         1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~dvvVE~t~~~   70 (117)
T PF03447_consen    1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAAS-----FPDEAFTTDLEELIDD----PDIDVVVECTSSE   70 (117)
T ss_dssp             ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHH-----HTHSCEESSHHHHHTH----TT-SEEEE-SSCH
T ss_pred             CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhh-----cccccccCCHHHHhcC----cCCCEEEECCCch
Confidence            65 999999999998876   89999999986 111111111     1234678899999974    4799999999999


Q ss_pred             hHHHHHHHHHHCCCcEEEeCCCC--CHHHHHHHHHHhhhcCceEEE
Q 027650          118 TVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLI  161 (220)
Q Consensus       118 ~~~~~~~~al~~G~~vVigTtG~--~~e~~~~L~~aA~~~~v~vvi  161 (220)
                      ...+++..++++|++||+...+.  +....++|.++|+++|+.+++
T Consensus        71 ~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~  116 (117)
T PF03447_consen   71 AVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY  116 (117)
T ss_dssp             HHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred             HHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence            99999999999999999876643  458889999999999998876

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=99.25  E-value=3.2e-11  Score=109.71  Aligned_cols=97  Identities=23%  Similarity=0.259  Sum_probs=75.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---------Ccchh-h---hhc-CCCCCCccccCCHHHHHhc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---------GEDIG-M---VCD-MEQPLEIPVMSDLTMVLGS  100 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---------g~d~g-~---l~g-~~~~~gv~v~~dl~~~l~~  100 (220)
                      |+||+|+|+ |+||+.+++++.++|++||+|++|+...         |.+.. .   ..+ . ...+++++.++++++. 
T Consensus         1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~-~~~~i~V~~~~~el~~-   77 (341)
T PRK04207          1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAF-EEAGIPVAGTIEDLLE-   77 (341)
T ss_pred             CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccc-cCCceEEcCChhHhhc-
Confidence            689999998 9999999999999999999999985320         11100 0   000 1 0235777888888875 


Q ss_pred             cccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                           ++|+|||||.+..+.+++..++++|+++|+-.+.
T Consensus        78 -----~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~  111 (341)
T PRK04207         78 -----KADIVVDATPGGVGAKNKELYEKAGVKAIFQGGE  111 (341)
T ss_pred             -----cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCCC
Confidence                 7999999999999999999999999999986653

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=99.25  E-value=1.5e-10  Score=99.32  Aligned_cols=122  Identities=16%  Similarity=0.182  Sum_probs=98.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |+|+++|| |.+|+.+.+.+... -++|+++++|+..  +++.++..   ..+....+++++++.      .+|++|++.
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~--ek~~~~~~---~~~~~~~s~ide~~~------~~DlvVEaA   68 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDE--EKAKELEA---SVGRRCVSDIDELIA------EVDLVVEAA   68 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCH--HHHHHHHh---hcCCCccccHHHHhh------ccceeeeeC
Confidence            58999998 99999999999865 4699999999752  33333321   223344589999985      799999999


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCCC-C-CHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTtG-~-~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      .++++.+++..+|++|+++++-.+| | +++-.++++++|+..+..+++.++---|+
T Consensus        69 S~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGl  125 (255)
T COG1712          69 SPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGL  125 (255)
T ss_pred             CHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhH
Confidence            9999999999999999999998886 4 57778889999999999999977644444

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=99.20  E-value=1.5e-10  Score=103.14  Aligned_cols=144  Identities=15%  Similarity=0.212  Sum_probs=99.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ++||+|+|+ |+||+.++..+.+.+++++++++|++...... ...   ..+|++. ++++++++..    .++|+|+++
T Consensus         1 klrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~~l-a~A---~~~Gi~~~~~~~e~ll~~----~dIDaV~ia   71 (285)
T TIGR03215         1 KVKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGL-ARA---RELGVKTSAEGVDGLLAN----PDIDIVFDA   71 (285)
T ss_pred             CcEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccHHH-HHH---HHCCCCEEECCHHHHhcC----CCCCEEEEC
Confidence            479999996 99999998888888999999999974311100 122   2467765 5689999874    579999999


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCCCCC----HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVPHIQ----LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTtG~~----~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      |++..+.+++..++++|+++++.||.+.    .-... +++..+..++.++.+||-+ .+-++.-+. .+.+.. .++|+
T Consensus        72 Tp~~~H~e~a~~al~aGk~VIdekPa~~~plvvp~VN-~~~~~~~~~~~iv~c~~~a-tip~~~al~-r~~d~~-~~~iv  147 (285)
T TIGR03215        72 TSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVN-LDEHLDAPNVNMVTCGGQA-TIPIVAAIS-RVAPVH-YAEIV  147 (285)
T ss_pred             CCcHHHHHHHHHHHHcCCEEEECCccccCCccCCCcC-HHHHhcCcCCCEEEcCcHH-HHHHHHHHH-Hhhccc-cEEEE
Confidence            9999999999999999999999999541    00111 3333344568888888855 333333333 232222 34665


Q ss_pred             ec
Q 027650          190 ES  191 (220)
Q Consensus       190 E~  191 (220)
                      -.
T Consensus       148 ~t  149 (285)
T TIGR03215       148 AS  149 (285)
T ss_pred             EE
Confidence            54

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=99.14  E-value=6.6e-10  Score=99.59  Aligned_cols=141  Identities=17%  Similarity=0.189  Sum_probs=100.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +++||+|+| +|++|+.++..+...++++|++++|.+... +.-...   ..+|++. +++++++++.. ...++|+|+|
T Consensus         3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~es-~gla~A---~~~Gi~~~~~~ie~LL~~~-~~~dIDiVf~   76 (302)
T PRK08300          3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPES-DGLARA---RRLGVATSAEGIDGLLAMP-EFDDIDIVFD   76 (302)
T ss_pred             CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChhh-HHHHHH---HHcCCCcccCCHHHHHhCc-CCCCCCEEEE
Confidence            468999999 599999999888888999999999875311 111122   2467776 58999999610 0026899999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCCCC---------CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCC
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVPHI---------QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY  183 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTtG~---------~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~  183 (220)
                      +|.+..+.+++..++++|+++|..||.+         +.++      .....++.++.+||=+.=-     ++..+.+ .
T Consensus        77 AT~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~------~~~~~~~~iia~p~~ati~-----~v~Al~~-v  144 (302)
T PRK08300         77 ATSAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDE------HLDAPNVNMVTCGGQATIP-----IVAAVSR-V  144 (302)
T ss_pred             CCCHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHH------HhcccCCCEEECccHHHHH-----HHHHhcc-c
Confidence            9999999999999999999999999854         4432      2344568899988844322     2222333 3


Q ss_pred             CCeEEEecc
Q 027650          184 KNVEIVESR  192 (220)
Q Consensus       184 ~diEIiE~H  192 (220)
                      .++++-|..
T Consensus       145 ~~~~~~eIv  153 (302)
T PRK08300        145 APVHYAEIV  153 (302)
T ss_pred             CcCceeeee
Confidence            455666665

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=99.13  E-value=3.4e-10  Score=97.90  Aligned_cols=103  Identities=15%  Similarity=0.164  Sum_probs=84.6

Q ss_pred             CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650           60 GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus        60 ~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                      +++|++++|++.  ..+.++.   +.+|+++++|+++++.     .++|+|+.+|++..+.+++..++++|+|++|.++|
T Consensus         1 ~~eLvaV~D~~~--e~a~~~a---~~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g   70 (229)
T TIGR03855         1 NFEIAAVYDRNP--KDAKELA---ERCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG   70 (229)
T ss_pred             CeEEEEEECCCH--HHHHHHH---HHhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence            478999999752  2233333   2457788999999986     37999999999999999999999999999999996


Q ss_pred             -C-CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650          140 -I-QLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       140 -~-~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                       + +.++.++|.++++++|.++++.++|--|...+
T Consensus        71 Alad~e~~~~l~~aA~~~g~~l~i~sGai~g~d~l  105 (229)
T TIGR03855        71 ALADRELRERLREVARSSGRKVYIPSGAIGGLDAL  105 (229)
T ss_pred             ccCCHHHHHHHHHHHHhcCCEEEEChHHHHHHHHH
Confidence             5 67899999999999999999987655555444

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=99.08  E-value=1e-09  Score=85.26  Aligned_cols=97  Identities=15%  Similarity=0.167  Sum_probs=72.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCC-CCCCccccC-CHHHHHhccccCCCccEEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDME-QPLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-~g~d~g~l~g~~-~~~gv~v~~-dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ||+|+|++|.+|+.+++++.++|+++++.++.+.. .|+.+....+.. ....+.+.+ +.+++ .      ++|+|+.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-S------DVDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-T------TESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-h------cCCEEEec
Confidence            79999999999999999999999999999999866 788887664310 011223333 33433 3      79999977


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCCCC
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVPHI  140 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTtG~  140 (220)
                      ++.....+....+++.|+.||--++.+
T Consensus        74 ~~~~~~~~~~~~~~~~g~~ViD~s~~~  100 (121)
T PF01118_consen   74 LPHGASKELAPKLLKAGIKVIDLSGDF  100 (121)
T ss_dssp             SCHHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred             CchhHHHHHHHHHhhCCcEEEeCCHHH
Confidence            777778899999999999777544444

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK06392 homoserine dehydrogenase; Provisional

Probab=99.08  E-value=2e-09  Score=97.62  Aligned_cols=160  Identities=18%  Similarity=0.164  Sum_probs=108.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc-------CCcEEEEEEecC-----CCCcchhhhhcCCCC--CCccccC--CHHHHHh
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA-------RGMEVAGAIDSH-----SVGEDIGMVCDMEQP--LEIPVMS--DLTMVLG   99 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-------~~~eLvg~vd~~-----~~g~d~g~l~g~~~~--~gv~v~~--dl~~~l~   99 (220)
                      |||+|+|+ |.+|+.+++.+.+.       .+++|+++.|+.     ..|-|+.++......  +.....+  ++++++.
T Consensus         1 mrVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~   79 (326)
T PRK06392          1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE   79 (326)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence            59999997 99999999998764       578999999963     234455444321111  1101112  6777775


Q ss_pred             ccccCCCccEEEEccCch----hHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650          100 SISQSKARAVVIDFTDAS----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (220)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~----~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~  175 (220)
                           .++||+||+|...    ....+++.++++|+|||...-+.-....++|.++|+++|+.+.+..+..-|.-++.-+
T Consensus        80 -----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~  154 (326)
T PRK06392         80 -----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFSLR  154 (326)
T ss_pred             -----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhhhh
Confidence                 4899999998532    2467889999999999975545434667899999999999999998887777766644


Q ss_pred             HHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHH
Q 027650          176 AISASFHYKNVEIVESRPNARMQLKSPTTSPTLVR  210 (220)
Q Consensus       176 a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~  210 (220)
                      -..+.  ..+|+=+|-       .-|||..-.|-|
T Consensus       155 ~~~~~--g~~i~~i~G-------ilnGT~nyIl~~  180 (326)
T PRK06392        155 DYSTL--PSRIKNFRG-------IVSSTINYVIRQ  180 (326)
T ss_pred             hhhcc--cCCEEEEEE-------EEeChHHHHHhh
Confidence            21233  235555544       345555544433

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=98.98  E-value=3.1e-09  Score=96.70  Aligned_cols=101  Identities=18%  Similarity=0.140  Sum_probs=74.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +|+||+|+||+|.+|+.+++.+.++|+++|++++++...|+.+.+..+ .....+ ..++++++...     .++|+|+.
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~-----~~vD~Vf~   74 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVD-LVLEPLDPEIL-----AGADVVFL   74 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccC-ceeecCCHHHh-----cCCCEEEE
Confidence            478999999999999999999999999999999986545555443321 100001 13555555432     37999998


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCCCC
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVPHI  140 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTtG~  140 (220)
                      +++...+.+.+..++++|++||--+..|
T Consensus        75 alP~~~~~~~v~~a~~aG~~VID~S~~f  102 (343)
T PRK00436         75 ALPHGVSMDLAPQLLEAGVKVIDLSADF  102 (343)
T ss_pred             CCCcHHHHHHHHHHHhCCCEEEECCccc
Confidence            8888888999999999999999655443

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.94  E-value=7.7e-09  Score=95.58  Aligned_cols=148  Identities=16%  Similarity=0.117  Sum_probs=99.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc--CC-CCCCccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD--ME-QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g--~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |+||.|+|| |++|+.++..++++.+.++..+..+...-.++.+..+  +. -..++.-.+.+.+++.      +.|+||
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~------~~d~VI   73 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIK------DFDLVI   73 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHh------cCCEEE
Confidence            689999998 9999999999998887888865443111112211110  00 0111222345666775      679999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH--HHHHHHHhcCCCCCeEEE
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL--LQQAAISASFHYKNVEIV  189 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l--l~~~a~~~~~~~~diEIi  189 (220)
                      .+-+|......+++|+++|+++|- |+ ..++...++++.|+++|+.++..-+|++|+.-  ..++++.+-+...++.|.
T Consensus        74 n~~p~~~~~~i~ka~i~~gv~yvD-ts-~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~~~i~si~iy  151 (389)
T COG1748          74 NAAPPFVDLTILKACIKTGVDYVD-TS-YYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELFDEIESIDIY  151 (389)
T ss_pred             EeCCchhhHHHHHHHHHhCCCEEE-cc-cCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhhccccEEEEE
Confidence            999999999999999999999994 33 33333388999999999999999999999942  244444433222344444


Q ss_pred             ec
Q 027650          190 ES  191 (220)
Q Consensus       190 E~  191 (220)
                      --
T Consensus       152 ~g  153 (389)
T COG1748         152 VG  153 (389)
T ss_pred             Ee
Confidence            33

>PRK06813 homoserine dehydrogenase; Validated

Probab=98.84  E-value=6e-08  Score=88.65  Aligned_cols=164  Identities=16%  Similarity=0.134  Sum_probs=107.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecCC-----CCcchhhhhcCCC-CCCc--cccCCHHHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHS-----VGEDIGMVCDMEQ-PLEI--PVMSDLTMV   97 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~-----~g~d~g~l~g~~~-~~gv--~v~~dl~~~   97 (220)
                      +++|+|+|+ |.+|+.+++.+.+.         -+++|+++++++.     .|-+...++..+. ....  ....+.++.
T Consensus         2 ~i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~   80 (346)
T PRK06813          2 KIKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER   80 (346)
T ss_pred             eeEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence            589999996 99999999998643         2578999998631     1323332221100 0000  012233333


Q ss_pred             HhccccCCCccEEEEccCc-----hhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650           98 LGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p-----~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                      +..   ..+.|||||+|..     +....+++.++++|+|||..--+.-....++|.++|+++|+.+.+..+..=|+-++
T Consensus        81 ~~~---~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI  157 (346)
T PRK06813         81 ATD---NISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTL  157 (346)
T ss_pred             hcC---CCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchH
Confidence            321   0258999999865     45578889999999999965445445566889999999999999998888787777


Q ss_pred             HHHHHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHHh
Q 027650          173 QQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVRS  211 (220)
Q Consensus       173 ~~~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~~  211 (220)
                      .-+-..++  ..+|+=+|-       .-|||..-.|-+-
T Consensus       158 ~~l~~~~~--g~~I~~i~G-------IlNGT~NyIL~~m  187 (346)
T PRK06813        158 DIGQFSLA--GCHIEKIEG-------ILNGTTNYILTKM  187 (346)
T ss_pred             HHHhhhcc--cCcEEEEEE-------EEechHHHHHhhh
Confidence            65522222  346665554       4577776555443

>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=98.80  E-value=8e-08  Score=84.95  Aligned_cols=159  Identities=20%  Similarity=0.250  Sum_probs=121.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      -||.|-|.+|++|..|.+...+. +..+|+.+.|.+.|..         -.++|+|++.+|++.+    .++|+-+.|-+
T Consensus         9 tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkgG~~---------~~g~PVf~tV~EA~~~----~~a~~svI~Vp   74 (293)
T COG0074           9 TKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKGGQT---------ILGLPVFNTVEEAVKE----TGANASVIFVP   74 (293)
T ss_pred             CeEEEeccccccchHHHHHHHHh-CCceeecccCCCCceE---------EcCccHHHHHHHHHHh----hCCCEEEEecC
Confidence            58999999999999999999887 9999999988654433         3468999999999985    68999888999


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH-----HHHhcCCCCCeEEE
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-----AISASFHYKNVEIV  189 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~-----a~~~~~~~~diEIi  189 (220)
                      |....+-+..|+++|+.+|+--| |....+.-++.+.+++.++.+ +-|| ..|+..-.++     -..+-+. -+|=|+
T Consensus        75 ~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~~i-iGPn-cpGiI~Pg~~kiGimp~~i~~~-G~IGiV  151 (293)
T COG0074          75 PPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGTRL-IGPN-CPGIITPGECKIGIMPGNIYKP-GNIGIV  151 (293)
T ss_pred             cHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCCEE-ECCC-CCccCcCCcceeeechhhhccC-CceEEE
Confidence            99999999999999988876655 888888899999999988544 4455 4444221111     1111111 245554


Q ss_pred             eccCCCCCCCCchhhHHHHHHhhhHHhhhcC
Q 027650          190 ESRPNARMQLKSPTTSPTLVRSTTEKIFQQT  220 (220)
Q Consensus       190 E~HH~~K~DaPSGTA~~~~~~~~~~~~~~~~  220 (220)
                               +-|||=...++.+.++.-|.|+
T Consensus       152 ---------SrSGTLTyE~~~qlt~~G~GqS  173 (293)
T COG0074         152 ---------SRSGTLTYEAVSQLTEAGLGQS  173 (293)
T ss_pred             ---------ecCcchHHHHHHHHHhcCCceE
Confidence                     4599998899999998888773

>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional

Probab=98.78  E-value=7.7e-08  Score=86.88  Aligned_cols=125  Identities=16%  Similarity=0.190  Sum_probs=98.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...||.|-|.||+-|+.|.+...+. +.++|+.+.|..-|+...       ..|+|+|.+++++.+.    .++|+.+.|
T Consensus        28 ~~t~v~vqGitg~~g~~h~~~~~~y-gt~iv~GV~Pgkgg~~v~-------~~Gvpvy~sv~ea~~~----~~~D~avI~   95 (317)
T PTZ00187         28 KNTKVICQGITGKQGTFHTEQAIEY-GTKMVGGVNPKKAGTTHL-------KHGLPVFATVKEAKKA----TGADASVIY   95 (317)
T ss_pred             CCCeEEEecCCChHHHHHHHHHHHh-CCcEEEEECCCCCCceEe-------cCCccccCCHHHHhcc----cCCCEEEEe
Confidence            3469999999999999999988776 889999998865443321       1278999999999873    359999989


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEe-CCCCCHHHHHHHHHHhh-hcCceEEEcCCCcHHHHHH
Q 027650          114 TDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCD-KASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVig-TtG~~~e~~~~L~~aA~-~~~v~vviapNfS~Gv~ll  172 (220)
                      .+|..+.+.+..|.++|++.++- |.|+.+.+..+++++++ +.|+. ++=|| ++|+...
T Consensus        96 VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~r-liGPN-c~Gii~p  154 (317)
T PTZ00187         96 VPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTR-LIGPN-CPGIIKP  154 (317)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCE-EECCC-CceEEcc
Confidence            99999999999999999998655 55898877777777765 35654 66688 7776433

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.76  E-value=4.2e-08  Score=89.17  Aligned_cols=124  Identities=20%  Similarity=0.197  Sum_probs=87.9

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCC-----------------CCCCccccCC
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME-----------------QPLEIPVMSD   93 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l~g~~-----------------~~~gv~v~~d   93 (220)
                      ....+||+++|+ |.||+-++..+...|+++++++.|+... .+++-+.+|..                 +.-.+.+++|
T Consensus        14 ~G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D   92 (438)
T COG4091          14 EGKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDD   92 (438)
T ss_pred             cCCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecc
Confidence            456799999997 9999999999999999999999985221 11111111110                 1223566788


Q ss_pred             HHHHHhccccCCCccEEEEcc-CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc
Q 027650           94 LTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT-~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia  162 (220)
                      .+.++..    ..+|||||.| .|+.-.++...++.+|+|+|.=.-..+----.-|++.|++  ..++++
T Consensus        93 ~~~i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~--~GviyS  156 (438)
T COG4091          93 AELIIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADA--AGVIYS  156 (438)
T ss_pred             hhhhhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhh--cCeEEe
Confidence            8888875    5799999998 6888899999999999999964433322222346777777  555554

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.73  E-value=6.1e-08  Score=88.75  Aligned_cols=142  Identities=18%  Similarity=0.139  Sum_probs=91.2

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-------cCCHHHHHhccccCCCccEE
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~DVV  110 (220)
                      |+|+|+ |+||+.+++.+.++++.+=+.+.|++.  ..+..+...-....+..       ..++.+++.      +.|+|
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~------~~dvV   71 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLR------GCDVV   71 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT------TSSEE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHh------cCCEE
Confidence            789999 999999999999988884444556531  12222221000011111       223555664      78999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH-H-HHHHHHHhcCCCCCeEE
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-L-LQQAAISASFHYKNVEI  188 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~-l-l~~~a~~~~~~~~diEI  188 (220)
                      |++..|......++.|+++|+|.|-  +.+-.++..++.+.++++|+.++..-.|..|.. + ...+++.+......++.
T Consensus        72 in~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~~~~~~v~~  149 (386)
T PF03435_consen   72 INCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELDAEGDEVES  149 (386)
T ss_dssp             EE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHHHTTHEEEE
T ss_pred             EECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhhhhcccceE
Confidence            9999998888999999999999996  555456778899999999999999999999985 3 35555555422224444


Q ss_pred             Ee
Q 027650          189 VE  190 (220)
Q Consensus       189 iE  190 (220)
                      +.
T Consensus       150 ~~  151 (386)
T PF03435_consen  150 VD  151 (386)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=98.66  E-value=3.9e-07  Score=82.69  Aligned_cols=166  Identities=16%  Similarity=0.115  Sum_probs=113.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecCCCCcchhhhhcCCCCCC-ccccCCH-----HHHH
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDL-----TMVL   98 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~~g~d~g~l~g~~~~~g-v~v~~dl-----~~~l   98 (220)
                      +++||+|+|. |.+|+.+++.+.+.         -+++++++.+++.  .....+-    ..+ -...++.     .+++
T Consensus         2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~   74 (333)
T COG0460           2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDG--SLVRDLD----LLNAEVWTTDGALSLGDEVL   74 (333)
T ss_pred             ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccc--hhccccc----ccchhhheecccccccHhhh
Confidence            4689999996 99999999999864         4689999998742  1111000    111 1223444     4444


Q ss_pred             hccccCCCccEEEEccCc--hhH--HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHH
Q 027650           99 GSISQSKARAVVIDFTDA--STV--YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (220)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p--~~~--~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~  174 (220)
                      ..    .+.|+||+.+..  +..  .++++.++++|+|||..--++-.....+|.++|+++|+.+++-.+-.=|+-++.-
T Consensus        75 ~~----~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~  150 (333)
T COG0460          75 LD----EDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKL  150 (333)
T ss_pred             cc----ccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHH
Confidence            42    588999987644  233  4889999999999995433555566899999999999999998887777766664


Q ss_pred             HHHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHHhhhHH-hhhc
Q 027650          175 AAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVRSTTEK-IFQQ  219 (220)
Q Consensus       175 ~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~~~~~~-~~~~  219 (220)
                      +-..++  ..+|+=++-       --|||.+-+|-|-.++. .|.|
T Consensus       151 lr~~l~--g~~I~~i~G-------IlNGT~NyIlt~m~~~~~~f~d  187 (333)
T COG0460         151 LRELLA--GDEILSIRG-------ILNGTTNYILTRMEEGGLSFED  187 (333)
T ss_pred             HHhhcc--cCceEEEEE-------EEeccHHHHHHHHHccCCCHHH
Confidence            444444  345543332       35899988887777776 6654

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.62  E-value=2.3e-07  Score=84.57  Aligned_cols=97  Identities=18%  Similarity=0.178  Sum_probs=69.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE-EecCCCCcchhhhhcCCC-------CCCcccc-CCHHHHHhccccCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA-IDSHSVGEDIGMVCDMEQ-------PLEIPVM-SDLTMVLGSISQSK  105 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~-vd~~~~g~d~g~l~g~~~-------~~gv~v~-~dl~~~l~~~~~~~  105 (220)
                      |+||+|+|++|.+|+.+++.+..+|+++|+++ .++...|++...+.+...       ..++.+. .+.+.+ .      
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~------   75 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D------   75 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c------
Confidence            58999999999999999999999999999998 444456766654332100       0112221 244433 3      


Q ss_pred             CccEEEEccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      ++|+|+++++.....+++..+.+.|+.+|.-+.
T Consensus        76 ~~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls~  108 (349)
T PRK08664         76 DVDIVFSALPSDVAGEVEEEFAKAGKPVFSNAS  108 (349)
T ss_pred             CCCEEEEeCChhHHHHHHHHHHHCCCEEEECCc
Confidence            799999777777778888888899999987554

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=98.61  E-value=8e-07  Score=69.00  Aligned_cols=110  Identities=20%  Similarity=0.314  Sum_probs=77.1

Q ss_pred             eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +|+|+|++   ++.|..+.+.+.+ .++++..+ .+.  +   ++      -.|.+.|.++++ ..     ..+|+++-|
T Consensus         2 siAVvGaS~~~~~~g~~v~~~l~~-~G~~v~~V-np~--~---~~------i~G~~~y~sl~e-~p-----~~iDlavv~   62 (116)
T PF13380_consen    2 SIAVVGASDNPGKFGYRVLRNLKA-AGYEVYPV-NPK--G---GE------ILGIKCYPSLAE-IP-----EPIDLAVVC   62 (116)
T ss_dssp             EEEEET--SSTTSHHHHHHHHHHH-TT-EEEEE-STT--C---SE------ETTEE-BSSGGG-CS-----ST-SEEEE-
T ss_pred             EEEEEcccCCCCChHHHHHHHHHh-CCCEEEEE-CCC--c---eE------ECcEEeeccccC-CC-----CCCCEEEEE
Confidence            69999976   8899999999988 67888865 332  1   22      236788999998 43     389999989


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~  170 (220)
                      ++|+...+.++.+.+.|+.-|+=.+|   +..+++.++++++|++++= || ++|+.
T Consensus        63 ~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vig-p~-C~gv~  114 (116)
T PF13380_consen   63 VPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIG-PN-CLGVV  114 (116)
T ss_dssp             S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEE-SS--HHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEe-CC-cceEE
Confidence            99999999999999999999988888   3346788899998888554 77 66663

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=98.61  E-value=3.2e-07  Score=83.66  Aligned_cols=97  Identities=18%  Similarity=0.177  Sum_probs=68.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhc-CCCCCCccccC--CHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCD-MEQPLEIPVMS--DLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~l~g-~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVI  111 (220)
                      +||+|+||||.+|+.+++.+.++|+++|++++++. ..|+.+.+..+ +....+. .++  +.++++.      ++|+|+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~-~~~~~~~~~~~~------~~DvVf   73 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDL-NLEPIDEEEIAE------DADVVF   73 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCc-eeecCCHHHhhc------CCCEEE
Confidence            58999999999999999999999999999887653 35665554332 1000011 122  4455543      699999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                      -+++...+.+.+..++++|++||-=+..
T Consensus        74 ~alP~~~s~~~~~~~~~~G~~VIDlS~~  101 (346)
T TIGR01850        74 LALPHGVSAELAPELLAAGVKVIDLSAD  101 (346)
T ss_pred             ECCCchHHHHHHHHHHhCCCEEEeCChh
Confidence            5555556678888899999988864443

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=98.61  E-value=4e-07  Score=68.18  Aligned_cols=91  Identities=23%  Similarity=0.294  Sum_probs=70.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...||+|+|+ |++|+.++.......++++++++|.+.  .+.++-     -.|+|+|.+++++.+.    .++|+.|.+
T Consensus         2 k~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~--~~~G~~-----i~gipV~~~~~~l~~~----~~i~iaii~   69 (96)
T PF02629_consen    2 KKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDP--EKIGKE-----IGGIPVYGSMDELEEF----IEIDIAIIT   69 (96)
T ss_dssp             TTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECT--TTTTSE-----ETTEEEESSHHHHHHH----CTTSEEEEE
T ss_pred             CCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCC--CccCcE-----ECCEEeeccHHHhhhh----hCCCEEEEE
Confidence            3569999998 999999886666778999999999642  122221     2479999999999874    249998878


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEe
Q 027650          114 TDASTVYDNVKQATAFGMRSVVY  136 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVig  136 (220)
                      .+++.+.+.+..+++.|+..|+-
T Consensus        70 VP~~~a~~~~~~~~~~gIk~i~n   92 (96)
T PF02629_consen   70 VPAEAAQEVADELVEAGIKGIVN   92 (96)
T ss_dssp             S-HHHHHHHHHHHHHTT-SEEEE
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEE
Confidence            88888899999999999988754

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=98.59  E-value=3.1e-07  Score=83.46  Aligned_cols=95  Identities=18%  Similarity=0.212  Sum_probs=67.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcC------CC-CCCccccCCHHHHHhccccCCCc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDM------EQ-PLEIPVMSDLTMVLGSISQSKAR  107 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~l~g~------~~-~~gv~v~~dl~~~l~~~~~~~~~  107 (220)
                      +||+|+|++|+||+.+++.+.++|+++|++++++. ..|++..++...      .. ..+.. +.++++...     .++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~   74 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLP-IVEPEPVAS-----KDV   74 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeE-EEeCCHHHh-----ccC
Confidence            58999999999999999999999999999998753 456666544321      00 01111 222222221     379


Q ss_pred             cEEEEccCchhHHHHHHHHHHCCCcEEEe
Q 027650          108 AVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (220)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (220)
                      |+|+.+++...+.++...+.++|+++|.=
T Consensus        75 DvVf~a~p~~~s~~~~~~~~~~G~~VIDl  103 (341)
T TIGR00978        75 DIVFSALPSEVAEEVEPKLAEAGKPVFSN  103 (341)
T ss_pred             CEEEEeCCHHHHHHHHHHHHHCCCEEEEC
Confidence            99997777777889999999999998863

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=98.58  E-value=1.3e-06  Score=78.19  Aligned_cols=119  Identities=16%  Similarity=0.269  Sum_probs=92.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +-||.|+|.+|++|+.+.+.+.+. +++.+..+.|.. |.  .+      -.|++.|.+++++-+.    .++|++|.+.
T Consensus         8 ~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~-~~--~~------v~G~~~y~sv~dlp~~----~~~DlAvi~v   73 (291)
T PRK05678          8 DTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGK-GG--TT------VLGLPVFNTVAEAVEA----TGANASVIYV   73 (291)
T ss_pred             CCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCC-CC--Ce------EeCeeccCCHHHHhhc----cCCCEEEEEc
Confidence            469999999999999999999875 444555565531 11  12      3478999999999751    0289988888


Q ss_pred             CchhHHHHHHHHHHCCCcE-EEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          115 DASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~v-VigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      +++.+.+.++.|.+.|++. ||=|.||..++.++|.++|++.|++++= || ++|+
T Consensus        74 p~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG-PN-c~Gi  127 (291)
T PRK05678         74 PPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG-PN-CPGI  127 (291)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC-CC-CCcc
Confidence            9999999999999999776 5667799877667999999998887764 77 5666

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=98.57  E-value=1.5e-06  Score=77.67  Aligned_cols=119  Identities=16%  Similarity=0.274  Sum_probs=93.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .-||.|.|.+|++|+.+.+.+... ++.+++.+.+.. +.  .+      -.|++.|.+++++-+.    .++|++|.+.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~-~~--~~------v~G~~~y~sv~dlp~~----~~~Dlavi~v   71 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGK-GG--TT------VLGLPVFDSVKEAVEE----TGANASVIFV   71 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCC-Cc--ce------ecCeeccCCHHHHhhc----cCCCEEEEec
Confidence            458999999999999999988776 556888777642 11  12      3478999999998751    1389988888


Q ss_pred             CchhHHHHHHHHHHCCCcEE-EeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          115 DASTVYDNVKQATAFGMRSV-VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vV-igTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      +++.+.+.++.|.+.|++.+ |-|.||.+.+.++|.+.|++.|++++= || ++|+
T Consensus        72 pa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~girilG-PN-c~Gi  125 (286)
T TIGR01019        72 PAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRLIG-PN-CPGI  125 (286)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC-CC-CceE
Confidence            99999999999999997654 567799887678999999998887763 66 5555

ATP citrate lyases appear to form an outgroup.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=98.54  E-value=5.8e-07  Score=83.17  Aligned_cols=99  Identities=11%  Similarity=0.141  Sum_probs=64.7

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHH-HhccccCCCccEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV-LGSISQSKARAVVI  111 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~-l~~~~~~~~~DVVI  111 (220)
                      ..++||+|+||||..|+++++.+.++|+++|+.+......|+.+.+....-.........+++.. +.      +.|+|+
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~------~~DvVf  109 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFS------DVDAVF  109 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhc------CCCEEE
Confidence            46679999999999999999999999999999988754456554332100000112223333332 32      799999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                       |+.|+.....+...++.|+.||-=+.
T Consensus       110 -~Alp~~~s~~i~~~~~~g~~VIDlSs  135 (381)
T PLN02968        110 -CCLPHGTTQEIIKALPKDLKIVDLSA  135 (381)
T ss_pred             -EcCCHHHHHHHHHHHhCCCEEEEcCc
Confidence             77777665444444678877775444

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.53  E-value=3.3e-07  Score=82.85  Aligned_cols=103  Identities=24%  Similarity=0.231  Sum_probs=71.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEec------------CC-CCcchhhh------hcCCCCCCccccCCH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS------------HS-VGEDIGMV------CDMEQPLEIPVMSDL   94 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~------------~~-~g~d~g~l------~g~~~~~gv~v~~dl   94 (220)
                      |+||+|+|. ||+||.++|++.+.+ ++|+||+-|.            +. .|.-.+++      .-. ...+++++...
T Consensus         1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v-~g~~I~v~~~~   78 (335)
T COG0057           1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVV-NGKGIKVLAER   78 (335)
T ss_pred             CcEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEE-CCceEEEEecC
Confidence            689999997 999999999999988 7999999982            00 11111111      000 12356666555


Q ss_pred             H-HHHhccccCCCccEEEEccCchhHHHHHHHHHHCC--CcEEEeCCCCC
Q 027650           95 T-MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG--MRSVVYVPHIQ  141 (220)
Q Consensus        95 ~-~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G--~~vVigTtG~~  141 (220)
                      + +.|.-  ++.+.|+|||+|.--...++....+++|  +.|+++-|+-+
T Consensus        79 ~p~~l~w--~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~  126 (335)
T COG0057          79 DPANLPW--ADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD  126 (335)
T ss_pred             ChHHCCc--cccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC
Confidence            5 44432  1235789999998877888888888886  77888777543

>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha

Probab=98.52  E-value=1.9e-06  Score=77.46  Aligned_cols=119  Identities=15%  Similarity=0.214  Sum_probs=93.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      -||.|.|-+|+-|..+.+...+. +..+++.+.+..-+.   +      -.|+++|.+++++-+.    .++|++|.+.+
T Consensus        13 ~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~~---~------i~G~~~y~sv~dlp~~----~~~DlAvI~vP   78 (300)
T PLN00125         13 TRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGGT---E------HLGLPVFNTVAEAKAE----TKANASVIYVP   78 (300)
T ss_pred             CeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCCc---e------EcCeeccCCHHHHhhc----cCCCEEEEecC
Confidence            59999999999999999988876 899999998743111   1      3478999999999862    13798888999


Q ss_pred             chhHHHHHHHHHHCCCc-EEEeCCCCCHHH-HHHHHHHhhhcCceEEEcCCCcHHHH
Q 027650          116 ASTVYDNVKQATAFGMR-SVVYVPHIQLET-VSALSAFCDKASMGCLIAPTLSIGSI  170 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~-vVigTtG~~~e~-~~~L~~aA~~~~v~vviapNfS~Gv~  170 (220)
                      +..+.+.++.|.++|++ +||-|.||.+.. .+.+.++++++|++++ =|| ++|+.
T Consensus        79 a~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girvi-GPN-c~Gii  133 (300)
T PLN00125         79 PPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLI-GPN-CPGII  133 (300)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEE-CCC-Cceee
Confidence            99999999999999988 456677997653 3556667888777655 477 66663

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=98.50  E-value=1.4e-06  Score=87.66  Aligned_cols=166  Identities=16%  Similarity=0.154  Sum_probs=106.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecC-----CCCcchhhhhcCCCCCCccccCCHHHHHhc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~-----~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~  100 (220)
                      .+++|+|+|+ |.+|+.+++.+.+..        +++++++.++.     ..|-+...+.....  ...-..+.+.+++.
T Consensus       464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~  540 (819)
T PRK09436        464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELA--EAGEPFDLDRLIRL  540 (819)
T ss_pred             ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHh--hccCCCCHHHHHHH
Confidence            6799999996 999999999986543        67899988752     12333333221000  00001123332211


Q ss_pred             cc-cCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCC-C--HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHH
Q 027650          101 IS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI-Q--LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (220)
Q Consensus       101 ~~-~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~-~--~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a  176 (220)
                      +. .....||+||+|.......+...++++|+|||...-+. .  -++.++|.++|+++|+.+.+..+..-|+-++.-+-
T Consensus       541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~  620 (819)
T PRK09436        541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQ  620 (819)
T ss_pred             HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHH
Confidence            10 01135899999987777778889999999999654443 2  26889999999999999999988887877666554


Q ss_pred             HHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHH
Q 027650          177 ISASFHYKNVEIVESRPNARMQLKSPTTSPTLVR  210 (220)
Q Consensus       177 ~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~  210 (220)
                      ..+. ...+|.=+|-       --|||..-.|-+
T Consensus       621 ~~~~-~g~~i~~i~G-------ilnGT~nyIl~~  646 (819)
T PRK09436        621 NLLN-AGDELLKFEG-------ILSGSLSFIFGK  646 (819)
T ss_pred             HHHh-ccCcEEEEEE-------EEeChHHHHhhh
Confidence            3331 1245555554       356666654443

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=98.49  E-value=9.7e-07  Score=71.62  Aligned_cols=33  Identities=39%  Similarity=0.434  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +||+|+|+ ||||+.+++.+.+.++++|+++.|+
T Consensus         1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecC
Confidence            58999997 9999999999998999999999984

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.49  E-value=2.1e-06  Score=78.28  Aligned_cols=120  Identities=15%  Similarity=0.177  Sum_probs=79.2

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHH-HHhccccCCCccE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAV  109 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~-~l~~~~~~~~~DV  109 (220)
                      .+|+||+|+||||..|+++++++.  .+|..+|+.+.+....|+.+. +.+    ....+ .++++ .++      ++|+
T Consensus         2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~-~~~----~~l~~-~~~~~~~~~------~vD~   69 (336)
T PRK05671          2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP-FAG----KNLRV-REVDSFDFS------QVQL   69 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec-cCC----cceEE-eeCChHHhc------CCCE
Confidence            467899999999999999999999  689999999987665666543 111    11222 22221 133      7999


Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEE------------EeCCCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHH
Q 027650          110 VIDFTDASTVYDNVKQATAFGMRSV------------VYVPHIQLETVSALSAFCDKASMGCLIAPT-LSIGSI  170 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vV------------igTtG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~  170 (220)
                      |+-++++....+.+..+.++|+.+|            .+-|.++.++++.+.    +  ..++-.|| |..++.
T Consensus        70 vFla~p~~~s~~~v~~~~~~G~~VIDlS~~fR~~~~pl~lPEvn~~~i~~~~----~--~~iIAnPgC~~t~~~  137 (336)
T PRK05671         70 AFFAAGAAVSRSFAEKARAAGCSVIDLSGALPSAQAPNVVPEVNAERLASLA----A--PFLVSSPSASAVALA  137 (336)
T ss_pred             EEEcCCHHHHHHHHHHHHHCCCeEEECchhhcCCCCCEEecccCHHHHcccc----C--CCEEECCCcHHHHHH
Confidence            9944555555778888899999887            333444554433321    2  46777899 444443

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.48  E-value=1.3e-06  Score=71.03  Aligned_cols=114  Identities=19%  Similarity=0.155  Sum_probs=75.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |+||+++|. |+||+.+++.+.+ .+++|. ++|+..  ....++.    ..|+...+++.++.+      .+|+||-+.
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~s~~e~~~------~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAK-AGYEVT-VYDRSP--EKAEALA----EAGAEVADSPAEAAE------QADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHH-TTTEEE-EEESSH--HHHHHHH----HTTEEEESSHHHHHH------HBSEEEE-S
T ss_pred             CCEEEEEch-HHHHHHHHHHHHh-cCCeEE-eeccch--hhhhhhH----HhhhhhhhhhhhHhh------cccceEeec
Confidence            789999996 9999999999976 488876 577642  2233343    246788899999987      689988655


Q ss_pred             Cc-hhHHHHHHH--H---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          115 DA-STVYDNVKQ--A---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       115 ~p-~~~~~~~~~--a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      +. +.+.+.+..  .   ++.|. +||-++..++++..++.+..++.|+..+=+|=
T Consensus        66 ~~~~~v~~v~~~~~i~~~l~~g~-iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV  120 (163)
T PF03446_consen   66 PDDDAVEAVLFGENILAGLRPGK-IIIDMSTISPETSRELAERLAAKGVRYVDAPV  120 (163)
T ss_dssp             SSHHHHHHHHHCTTHGGGS-TTE-EEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccchhhhhhhhhhHHhhccccce-EEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence            44 333444333  2   23444 45567778889999999999888888876553

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=98.48  E-value=2e-06  Score=78.46  Aligned_cols=120  Identities=13%  Similarity=0.136  Sum_probs=82.0

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      ..++||+|+||||..|+++++++.+  +|..+|+.+......|+.+. +.+    ..+.+. ++++..-     .++|++
T Consensus         2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~-~~~----~~~~v~-~~~~~~~-----~~~Dvv   70 (336)
T PRK08040          2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR-FGG----KSVTVQ-DAAEFDW-----SQAQLA   70 (336)
T ss_pred             CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE-ECC----cceEEE-eCchhhc-----cCCCEE
Confidence            3568999999999999999999998  89999999877656677665 221    134443 5555431     278999


Q ss_pred             EEccCchhH-HHHHHHHHHCCCcEEEeC-------------CCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHH
Q 027650          111 IDFTDASTV-YDNVKQATAFGMRSVVYV-------------PHIQLETVSALSAFCDKASMGCLIAPT-LSIGSI  170 (220)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G~~vVigT-------------tG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~  170 (220)
                      + |+.|+.. .+.+..+.++|+.||-=+             |.++.+..+.|    ++  ..++-.|| +..++.
T Consensus        71 f-~a~p~~~s~~~~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i----~~--~~iIAnPgC~~t~~~  138 (336)
T PRK08040         71 F-FVAGREASAAYAEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADY----RN--RNIIAVADSLTSQLL  138 (336)
T ss_pred             E-ECCCHHHHHHHHHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhh----cc--CCEEECCCHHHHHHH
Confidence            9 6666555 578888889999877322             33455443433    22  35777799 555553

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.47  E-value=1.6e-06  Score=78.76  Aligned_cols=119  Identities=20%  Similarity=0.279  Sum_probs=76.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH-HHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVI  111 (220)
                      |+||+|+|++|+.|+++++.+.+  +|.++|+++......|+... +.+    ..+.+ .|++ ..+.      ++|+||
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~-~~g----~~i~v-~d~~~~~~~------~vDvVf   68 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS-FKG----KELKV-EDLTTFDFS------GVDIAL   68 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee-eCC----ceeEE-eeCCHHHHc------CCCEEE
Confidence            57999999999999999999998  79999999876655565543 111    12333 2333 2232      799999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEE-------------EeCCCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHHH
Q 027650          112 DFTDASTVYDNVKQATAFGMRSV-------------VYVPHIQLETVSALSAFCDKASMGCLIAPT-LSIGSIL  171 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vV-------------igTtG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~l  171 (220)
                      .++......+.+..++++|+.||             .+-|+++.++   |.. +.+  ..++-.|| +..++.+
T Consensus        69 ~A~g~g~s~~~~~~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~---i~~-~~~--~~iVanp~C~~t~~~l  136 (334)
T PRK14874         69 FSAGGSVSKKYAPKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEA---LAE-HRK--KGIIANPNCSTIQMVV  136 (334)
T ss_pred             ECCChHHHHHHHHHHHhCCCEEEECCchhhcCCCCCeEcCCcCHHH---Hhh-hhc--CCeEECccHHHHHHHH
Confidence            54544555788888889999555             2333445543   332 212  24777788 5555543

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.46  E-value=5.2e-07  Score=82.07  Aligned_cols=94  Identities=21%  Similarity=0.178  Sum_probs=69.1

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCC------------CCCCccccCCHHHHHhccccC
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDME------------QPLEIPVMSDLTMVLGSISQS  104 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l~g~~------------~~~gv~v~~dl~~~l~~~~~~  104 (220)
                      |||+|+ |++|+.+++.+.+.++++||++.|.+.. ...+..+.|..            ...++.+..++++++.     
T Consensus         1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~-----   74 (333)
T TIGR01546         1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE-----   74 (333)
T ss_pred             CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh-----
Confidence            689997 9999999999988899999999995321 00111111110            1234667788999985     


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHCCCcE-EEeCC
Q 027650          105 KARAVVIDFTDASTVYDNVKQATAFGMRS-VVYVP  138 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~v-VigTt  138 (220)
                       ++|+|+++|+...+..+....++.|... ++|-|
T Consensus        75 -~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        75 -KVDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             -cCCEEEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence             7999999998888899999999988555 45555

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PLN02700 homoserine dehydrogenase family protein

Probab=98.43  E-value=3.5e-06  Score=77.90  Aligned_cols=162  Identities=17%  Similarity=0.198  Sum_probs=100.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecC-----C----CCcchhhhhc---C-CCCCCcccc--
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH-----S----VGEDIGMVCD---M-EQPLEIPVM--   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~-----~----~g~d~g~l~g---~-~~~~gv~v~--   91 (220)
                      +++|+|+|. |.+|+.+++.+.+..        ++.++|+.++.     .    .|-|+..+..   . .....+..+  
T Consensus         3 ~i~i~liG~-G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~   81 (377)
T PLN02700          3 KIPVLLLGC-GGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA   81 (377)
T ss_pred             EEEEEEEec-ChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence            479999996 999999999876542        36788998852     1    1334333221   0 001111001  


Q ss_pred             -----------------CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhh
Q 027650           92 -----------------SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (220)
Q Consensus        92 -----------------~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~  154 (220)
                                       .+..+.+..    ...+|+||+|......++++.++++|+|||..--+......+++.++++ 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~-  156 (377)
T PLN02700         82 LAGGCQVFNNSELSRKVIDIATLLGK----STGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA-  156 (377)
T ss_pred             ccccccccccccccchhhhHHHHhhc----cCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-
Confidence                             122233321    2469999999887778999999999999995543433334455666664 


Q ss_pred             cCceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHH
Q 027650          155 ASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLVR  210 (220)
Q Consensus       155 ~~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~  210 (220)
                      +|+.+.+..+..-|.-++..+-..+. ...+|.=+|-       .-|||..-.|-+
T Consensus       157 ~~~~~~yEatVgaGlPiI~tl~~ll~-sGd~I~~I~G-------IlnGT~nyIl~~  204 (377)
T PLN02700        157 HPRRIRHESTVGAGLPVIASLNRILS-SGDPVHRIVG-------SLSGTLGYVMSE  204 (377)
T ss_pred             cCCeEEEEeeeeeccchHHHHHHHhh-ccCCEEEEEE-------EEeChHHHHHHH
Confidence            68999998888877766665543332 2346666665       456666554433

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=98.42  E-value=4e-06  Score=75.79  Aligned_cols=107  Identities=16%  Similarity=0.184  Sum_probs=74.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +|+||+|+|++|..|+++++++.++|+++|+.+..+.  +.+.               .+.++...      ++|+|+ |
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~--~~~~---------------~~~~~~~~------~~DvvF-l   56 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAK--RKDA---------------AARRELLN------AADVAI-L   56 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCC--CCcc---------------cCchhhhc------CCCEEE-E
Confidence            5789999999999999999999999999999987543  1111               11223332      789999 6


Q ss_pred             cCchhH-HHHHHHHHHCCCcEE-------------EeCCCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHH
Q 027650          114 TDASTV-YDNVKQATAFGMRSV-------------VYVPHIQLETVSALSAFCDKASMGCLIAPT-LSIGSI  170 (220)
Q Consensus       114 T~p~~~-~~~~~~al~~G~~vV-------------igTtG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~  170 (220)
                      +.|+.. .+.+..+.+.|+.||             .|-|.+++++.++|+    .  ..++-.|| |..++.
T Consensus        57 alp~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~----~--~~~IanPgC~~Ta~~  122 (313)
T PRK11863         57 CLPDDAAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA----A--AKRVANPGCYPTGAI  122 (313)
T ss_pred             CCCHHHHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh----c--CCeEEcCCcHHHHHH
Confidence            555555 677888889998776             333444555544443    2  35677788 555554

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=98.39  E-value=1.7e-06  Score=78.64  Aligned_cols=97  Identities=16%  Similarity=0.080  Sum_probs=69.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCcccc-CCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVM-SDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~~gv~v~-~dl~~~l~~~~~~~~~DVVI  111 (220)
                      +|+||+|+|++|..|.+++|.+..||++|+.-+..+...|+.+.++... ......+.. -|.+++..     .++|||+
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~-----~~~DvvF   75 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIEL-----DECDVVF   75 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhc-----ccCCEEE
Confidence            4899999999999999999999999999966655555578877765431 000112221 23444422     3689999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEE
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVV  135 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVi  135 (220)
                      -+++.....+.+...++.|+.||=
T Consensus        76 lalPhg~s~~~v~~l~~~g~~VID   99 (349)
T COG0002          76 LALPHGVSAELVPELLEAGCKVID   99 (349)
T ss_pred             EecCchhHHHHHHHHHhCCCeEEE
Confidence            666666668999999999999763

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=98.38  E-value=4.7e-06  Score=83.81  Aligned_cols=164  Identities=14%  Similarity=0.100  Sum_probs=104.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcC---------CcEEEEEEecC-----CCCcchhhhhcCCCCCCccccCCHHHHHh
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKAR---------GMEVAGAIDSH-----SVGEDIGMVCDMEQPLEIPVMSDLTMVLG   99 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---------~~eLvg~vd~~-----~~g~d~g~l~g~~~~~gv~v~~dl~~~l~   99 (220)
                      .+++|+|+|+ |.+|+.+++.+.+..         +++|++++++.     ..|-+...+...-.  ......+++.+++
T Consensus       457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~--~~~~~~~~~~~~e  533 (810)
T PRK09466        457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFD--DEAVEWDEESLFL  533 (810)
T ss_pred             ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHH--hhcCCccHHHHHH
Confidence            4689999997 999999999986532         57889999863     12323333221000  0001112332221


Q ss_pred             cccc-CCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCC---CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650          100 SISQ-SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (220)
Q Consensus       100 ~~~~-~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~---~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~  175 (220)
                      .+.. ....+|+||+|..+....+...++++|+|||...-..   ..+..++|.++|+++|+.+.+..+..-|+-++.-+
T Consensus       534 ~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii~~l  613 (810)
T PRK09466        534 WLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPINHTV  613 (810)
T ss_pred             HHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChHHHH
Confidence            1100 0123599999988777778889999999999654432   34788999999999999999998888777664332


Q ss_pred             HHHhcCCCCCeEEEeccCCCCCCCCchhhHHHH
Q 027650          176 AISASFHYKNVEIVESRPNARMQLKSPTTSPTL  208 (220)
Q Consensus       176 a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~  208 (220)
                      - .+.....+|.=+|-       .-|||..-++
T Consensus       614 ~-~l~~~gd~i~~i~G-------IlnGT~nyi~  638 (810)
T PRK09466        614 R-DLRNSGDSILAISG-------IFSGTLSWLF  638 (810)
T ss_pred             H-HHHhccCcEEEEEE-------EEccHHHHHH
Confidence            2 22112456665554       3677776544

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=98.36  E-value=6.5e-06  Score=75.91  Aligned_cols=118  Identities=10%  Similarity=0.067  Sum_probs=74.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCccccC--CHHHHHhccccCCCccE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAV  109 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DV  109 (220)
                      |+||+|+||||..|+++++.+.++++++   |+...++ ..|.....+.|    ....+.+  +.+. +.      ++|+
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~-~sg~~~~~f~g----~~~~v~~~~~~~~-~~------~~Di   68 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS-QAGGAAPSFGG----KEGTLQDAFDIDA-LK------KLDI   68 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch-hhCCcccccCC----CcceEEecCChhH-hc------CCCE
Confidence            6899999999999999999888899998   8774333 33333322222    1223332  2333 33      7999


Q ss_pred             EEEccCchhH-HHHHHHHHHCCCc-EEEeC--------------CCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          110 VIDFTDASTV-YDNVKQATAFGMR-SVVYV--------------PHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       110 VIDfT~p~~~-~~~~~~al~~G~~-vVigT--------------tG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      ++ |+.|..+ .+.+..+.++|++ +||--              |.++++++   .. ..+.|+.++..||=+.-.
T Consensus        69 vf-~a~~~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i---~~-~~~~g~~iIanPnC~tt~  139 (369)
T PRK06598         69 II-TCQGGDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVI---DD-ALANGVKTFVGGNCTVSL  139 (369)
T ss_pred             EE-ECCCHHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHH---Hh-hhhcCCCEEEcCChHHHH
Confidence            88 7766655 5777888899975 34333              33455543   33 334566678889944433

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.33  E-value=1.1e-05  Score=69.21  Aligned_cols=120  Identities=11%  Similarity=0.066  Sum_probs=74.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ++||+|+|+ |+||+.+++.+....  +.+-+.++++.. .+....+.   ..+++.++.|++++++      ++|+||.
T Consensus         4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~------~~DiVii   72 (245)
T PRK07634          4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSN-VEKLDQLQ---ARYNVSTTTDWKQHVT------SVDTIVL   72 (245)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCC-HHHHHHHH---HHcCcEEeCChHHHHh------cCCEEEE
Confidence            479999997 999999999887653  344233344321 12233333   2356677889988885      7999998


Q ss_pred             ccCchhHHHHHHHHHH--CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHHH
Q 027650          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS  169 (220)
Q Consensus       113 fT~p~~~~~~~~~al~--~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~Gv  169 (220)
                      .++|..+.+.+.....  .+..+|.-.-|++.++++   +.... +.+++ .=||+..-+
T Consensus        73 avp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~---~~~~~-~~~v~r~~Pn~a~~v  128 (245)
T PRK07634         73 AMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLE---ERLPK-GTPVAWIMPNTAAEI  128 (245)
T ss_pred             ecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHH---HHcCC-CCeEEEECCcHHHHH
Confidence            8888888777765432  354444444489887544   33321 22343 337766544

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=98.30  E-value=3.7e-06  Score=68.49  Aligned_cols=99  Identities=22%  Similarity=0.262  Sum_probs=59.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC---CC--------------C--cccc--CCH
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ---PL--------------E--IPVM--SDL   94 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~---~~--------------g--v~v~--~dl   94 (220)
                      |||+|+|. ||+||.+.|.+...+++||+++-|....-+...-++.-..   ++              |  +.++  .++
T Consensus         1 ikVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp   79 (151)
T PF00044_consen    1 IKVGINGF-GRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP   79 (151)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred             CEEEEECC-CcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhh
Confidence            69999996 9999999999999999999999885310111111100000   00              0  1111  233


Q ss_pred             HHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                      +++-..   +.++|+|+|+|..-...+.+...+++|.. ||++.|
T Consensus        80 ~~i~W~---~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap  121 (151)
T PF00044_consen   80 EEIPWG---ELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAP  121 (151)
T ss_dssp             GGSTHH---HHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS
T ss_pred             cccccc---cccccEEEeccccceecccccccccccccceeeccc
Confidence            332110   12678888888777777777777777744 444444

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=98.30  E-value=1.8e-05  Score=72.38  Aligned_cols=122  Identities=15%  Similarity=0.184  Sum_probs=78.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH-HHHhccccCCCccEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVV  110 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVV  110 (220)
                      ..+||+|+|++|+.|+++++.+.+  +|..+|+.+......|+.... .+    ..+. +.+++ +.+.      ++|+|
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~-~~----~~~~-v~~~~~~~~~------~~D~v   73 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF-EG----RDYT-VEELTEDSFD------GVDIA   73 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee-cC----ceeE-EEeCCHHHHc------CCCEE
Confidence            457999999999999999999988  899999988766555665533 11    1222 22222 3333      79999


Q ss_pred             EEccCchhH-HHHHHHHHHCCCcEEEeC-------------CCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHH
Q 027650          111 IDFTDASTV-YDNVKQATAFGMRSVVYV-------------PHIQLETVSALSAFCDKASMGCLIAPT-LSIGSI  170 (220)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G~~vVigT-------------tG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~  170 (220)
                      + |+.|+.. .+.+..+.+.|+.||--+             |.++.++++..+  ..+..-.++-.|| +..++.
T Consensus        74 f-~a~p~~~s~~~~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~--~~~~~~~iIanPgC~~t~~~  145 (344)
T PLN02383         74 L-FSAGGSISKKFGPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIK--LGKGKGALIANPNCSTIICL  145 (344)
T ss_pred             E-ECCCcHHHHHHHHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhh--hcccCCcEEECCCcHHHHHH
Confidence            9 7766655 677788889998887322             334555433311  0011134777799 555553

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.30  E-value=1.4e-05  Score=70.55  Aligned_cols=115  Identities=18%  Similarity=0.174  Sum_probs=78.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ++||+|+|+ |.||+.+++.+.. .++++. ++|++.  .....+.    ..++.+.+++++++.      ++|+||.+.
T Consensus         2 ~~~IgviG~-G~mG~~~a~~l~~-~g~~v~-~~d~~~--~~~~~~~----~~g~~~~~~~~e~~~------~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIGL-GIMGKPMSKNLLK-AGYSLV-VYDRNP--EAVAEVI----AAGAETASTAKAVAE------QCDVIITML   66 (296)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEeC
Confidence            579999996 9999999998876 578876 467632  2222232    235666788888875      799999666


Q ss_pred             CchhHHHHHH-------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          115 DASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       115 ~p~~~~~~~~-------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      ++....+.+.       ..++.|.-+ +-++..++...++|.+..++.|+.++-+|-|
T Consensus        67 p~~~~~~~v~~~~~~~~~~~~~g~ii-id~st~~~~~~~~l~~~~~~~g~~~~d~pv~  123 (296)
T PRK11559         67 PNSPHVKEVALGENGIIEGAKPGTVV-IDMSSIAPLASREIAAALKAKGIEMLDAPVS  123 (296)
T ss_pred             CCHHHHHHHHcCcchHhhcCCCCcEE-EECCCCCHHHHHHHHHHHHHcCCcEEEcCCC
Confidence            5444433332       223445444 4555667777888888888888888877744

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.30  E-value=3.7e-06  Score=75.57  Aligned_cols=125  Identities=14%  Similarity=0.152  Sum_probs=76.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-------hcCCCCCCccccCCHHHHHhccccCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-------CDMEQPLEIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l-------~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (220)
                      .+|||+|+|+ |.||..++..+... +.++. +++++.. .+.+...       .|..-+..+..++++++++.      
T Consensus         3 ~~m~I~iIG~-G~mG~~ia~~L~~~-G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~------   73 (328)
T PRK14618          3 HGMRVAVLGA-GAWGTALAVLAASK-GVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALA------   73 (328)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHc------
Confidence            4679999997 99999999988764 67755 4555210 1111110       01000011445678888774      


Q ss_pred             CccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHH--HHHHHHHhhh---cCceEEEcCCCcHH
Q 027650          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCDK---ASMGCLIAPTLSIG  168 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~--~~~L~~aA~~---~~v~vviapNfS~G  168 (220)
                      ++|+||-+.++..+ +.+...++.+..+|.-++|+++++  ...+.+...+   .++.++..||+.--
T Consensus        74 ~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~  140 (328)
T PRK14618         74 GADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEE  140 (328)
T ss_pred             CCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHH
Confidence            79999855555544 444444566777777777876543  4556665544   56777778887664

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=98.29  E-value=4.6e-06  Score=64.39  Aligned_cols=94  Identities=19%  Similarity=0.174  Sum_probs=61.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-CCCcchhhhhcCCCCCCccccCCHH--HHHhccccCCCccEEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-SVGEDIGMVCDMEQPLEIPVMSDLT--MVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~~g~d~g~l~g~~~~~gv~v~~dl~--~~l~~~~~~~~~DVVIDf  113 (220)
                      ||+|+|++|++|+.+++.+..+|+++++++++++ ..|+++....+   ...-.++.+++  ....     .++|+|+.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----~~~DvV~~~   72 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGP---HLKGEVVLELEPEDFEE-----LAVDIVFLA   72 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCc---ccccccccccccCChhh-----cCCCEEEEc
Confidence            6999999899999999999999999999997743 34555544321   11101111221  1111     378999977


Q ss_pred             cCchhHHHH---HHHHHHCCCcEEEeCC
Q 027650          114 TDASTVYDN---VKQATAFGMRSVVYVP  138 (220)
Q Consensus       114 T~p~~~~~~---~~~al~~G~~vVigTt  138 (220)
                      ++++.+.+.   +..+++.|+.+|--++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~g~~viD~s~  100 (122)
T smart00859       73 LPHGVSKEIAPLLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             CCcHHHHHHHHHHHhhhcCCCEEEECCc
Confidence            777777774   3445678887774333

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.24  E-value=1e-05  Score=70.36  Aligned_cols=102  Identities=10%  Similarity=0.042  Sum_probs=67.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +|+||+|+|+ |+||+.+++.+.+.. ...-+.+++++.  +....+.   ..+++.+..+.++++.      ++|+||.
T Consensus         1 ~mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~--~~~~~~~---~~~g~~~~~~~~~~~~------~advVil   68 (267)
T PRK11880          1 MMKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSP--EKRAALA---EEYGVRAATDNQEAAQ------EADVVVL   68 (267)
T ss_pred             CCCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCH--HHHHHHH---HhcCCeecCChHHHHh------cCCEEEE
Confidence            4789999997 999999999887642 223455677642  2222222   1235667778888775      7999998


Q ss_pred             ccCchhHHHHHHHHHHC-CCcEEEeCCCCCHHHHHH
Q 027650          113 FTDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSA  147 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~-G~~vVigTtG~~~e~~~~  147 (220)
                      ++.|..+.+.++.+... +..+|.-+.|.+.++++.
T Consensus        69 ~v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~~  104 (267)
T PRK11880         69 AVKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLER  104 (267)
T ss_pred             EcCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHHH
Confidence            88888777777665543 444554455787655443

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.23  E-value=7.7e-06  Score=69.56  Aligned_cols=95  Identities=20%  Similarity=0.318  Sum_probs=66.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ...||+|+|+ |.+|+.+++.+. ...+++++|++|.+.  ...+...+   ..++..++++++++.+    .++|++|.
T Consensus        83 ~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~--~~~~~~i~---g~~v~~~~~l~~li~~----~~iD~ViI  152 (213)
T PRK05472         83 RTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDP--EKIGTKIG---GIPVYHIDELEEVVKE----NDIEIGIL  152 (213)
T ss_pred             CCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECCh--hhcCCEeC---CeEEcCHHHHHHHHHH----CCCCEEEE
Confidence            4579999997 999999998643 457899999999632  11121110   1112234678888763    47999997


Q ss_pred             ccCchhHHHHHHHHHHCCCcEE-EeCC
Q 027650          113 FTDASTVYDNVKQATAFGMRSV-VYVP  138 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV-igTt  138 (220)
                      ++++..+.+....++++|++.| +.+|
T Consensus       153 a~P~~~~~~i~~~l~~~Gi~~il~~~p  179 (213)
T PRK05472        153 TVPAEAAQEVADRLVEAGIKGILNFAP  179 (213)
T ss_pred             eCCchhHHHHHHHHHHcCCCEEeecCc
Confidence            7777777888899999996544 4455

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=98.22  E-value=1.8e-05  Score=72.13  Aligned_cols=86  Identities=13%  Similarity=0.130  Sum_probs=60.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH-HHHhccccCCCccEEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVIDf  113 (220)
                      ||+|+||+|+.|+++++.+.+  +|..+|+.+......|+... +.+    ..+. ..+++ +.+.      ++|+|+.+
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~-~~~----~~~~-~~~~~~~~~~------~~D~v~~a   68 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT-FKG----KELE-VNEAKIESFE------GIDIALFS   68 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee-eCC----eeEE-EEeCChHHhc------CCCEEEEC
Confidence            699999999999999999988  78899987766555565543 111    1122 22222 2233      79999966


Q ss_pred             cCchhHHHHHHHHHHCCCcEE
Q 027650          114 TDASTVYDNVKQATAFGMRSV  134 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV  134 (220)
                      +......+.+..+++.|+.||
T Consensus        69 ~g~~~s~~~a~~~~~~G~~VI   89 (339)
T TIGR01296        69 AGGSVSKEFAPKAAKCGAIVI   89 (339)
T ss_pred             CCHHHHHHHHHHHHHCCCEEE
Confidence            666666788888999998655

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=98.21  E-value=2.5e-05  Score=70.53  Aligned_cols=106  Identities=14%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .||+|+|++|.+|.+++|++..+|++||+.+.....       +    .      ..+.++++.      ++|+++ |+.
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-------~----~------~~~~~~~~~------~~D~vF-lal   57 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-------K----D------AAERAKLLN------AADVAI-LCL   57 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-------c----C------cCCHhHhhc------CCCEEE-ECC
Confidence            489999999999999999999999999999876431       0    0      013344443      799999 655


Q ss_pred             chh-HHHHHHHHHHCCCcEE-------------EeCCCCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHHH
Q 027650          116 AST-VYDNVKQATAFGMRSV-------------VYVPHIQLETVSALSAFCDKASMGCLIAPT-LSIGSIL  171 (220)
Q Consensus       116 p~~-~~~~~~~al~~G~~vV-------------igTtG~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~l  171 (220)
                      |+. ..+.+..+.+.|+.||             .|-|.++++..++|.    +  ..++-.|| |..++.|
T Consensus        58 p~~~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~----~--a~lIAnPgC~aTa~~L  122 (310)
T TIGR01851        58 PDDAAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR----N--SKRIANPGCYPTGFIA  122 (310)
T ss_pred             CHHHHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc----c--CCEEECCCCHHHHHHH
Confidence            554 4677788888898766             333444554444443    2  35777788 6666643

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.20  E-value=1.7e-05  Score=68.88  Aligned_cols=114  Identities=10%  Similarity=0.063  Sum_probs=70.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      |||+++|+ |+||+.+++.+.+.. ..+-+.+++++.  ....++..   .. ++.++++.++++.      ++|+||..
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~--~~~~~l~~---~~~~~~~~~~~~~~~~------~aDvVila   68 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNA--QIAARLAE---RFPKVRIAKDNQAVVD------RSDVVFLA   68 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCH--HHHHHHHH---HcCCceEeCCHHHHHH------hCCEEEEE
Confidence            48999996 999999999987652 223345566531  22223321   22 4667788888875      68999988


Q ss_pred             cCchhHHHHHHHH-HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          114 TDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       114 T~p~~~~~~~~~a-l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      ++|+...+.+... +..|..+|.-..|.+.++++.+.   ......+...||
T Consensus        69 v~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~l~~~~---~~~~~~~r~~P~  117 (258)
T PRK06476         69 VRPQIAEEVLRALRFRPGQTVISVIAATDRAALLEWI---GHDVKLVRAIPL  117 (258)
T ss_pred             eCHHHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHh---CCCCCEEEECCC
Confidence            8887776666543 34566666644577776655543   322234444465

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=98.16  E-value=6.9e-06  Score=74.86  Aligned_cols=96  Identities=23%  Similarity=0.131  Sum_probs=66.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhhhcCCC-----CCCcccc--CC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMVCDMEQ-----PLEIPVM--SD   93 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------------~~g~d~g~l~g~~~-----~~gv~v~--~d   93 (220)
                      ++||+|+|+ ||||+.+.|.+.+.++++|+++.|+.              -.|+--+.+...+.     ...+.++  .+
T Consensus         2 ~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~   80 (334)
T PRK08955          2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKA   80 (334)
T ss_pred             CeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCC
Confidence            489999998 99999999999988999999999831              01221111100000     0122332  26


Q ss_pred             HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEe
Q 027650           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (220)
                      +++.-.     .++|+||++|......+.+...++.|...|+=
T Consensus        81 ~~~~~w-----~gvDiVle~tG~~~s~~~a~~hl~aGak~V~i  118 (334)
T PRK08955         81 IADTDW-----SGCDVVIEASGVMKTKALLQAYLDQGVKRVVV  118 (334)
T ss_pred             hhhCCc-----cCCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence            666654     38999998888888889999999999766653

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.15  E-value=1.8e-05  Score=58.26  Aligned_cols=87  Identities=16%  Similarity=0.102  Sum_probs=60.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccC-CHHHHHhccccCCCccEEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ||+++|+ |+||..+++.+.+..  ..++.-+++++  .+.+.++.   ..+++.++. +..++++      .+|+||-+
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~--~~~~~~~~---~~~~~~~~~~~~~~~~~------~advvila   68 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRS--PEKAAELA---KEYGVQATADDNEEAAQ------EADVVILA   68 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESS--HHHHHHHH---HHCTTEEESEEHHHHHH------HTSEEEE-
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCc--HHHHHHHH---HhhccccccCChHHhhc------cCCEEEEE
Confidence            7999996 999999999987753  26777565653  23334443   244555555 7888886      69999978


Q ss_pred             cCchhHHHHHHHH--HHCCCcEEE
Q 027650          114 TDASTVYDNVKQA--TAFGMRSVV  135 (220)
Q Consensus       114 T~p~~~~~~~~~a--l~~G~~vVi  135 (220)
                      ..|....+.+...  ...++-+|.
T Consensus        69 v~p~~~~~v~~~i~~~~~~~~vis   92 (96)
T PF03807_consen   69 VKPQQLPEVLSEIPHLLKGKLVIS   92 (96)
T ss_dssp             S-GGGHHHHHHHHHHHHTTSEEEE
T ss_pred             ECHHHHHHHHHHHhhccCCCEEEE
Confidence            8888887776654  667777664

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=98.13  E-value=4.1e-05  Score=69.63  Aligned_cols=151  Identities=16%  Similarity=0.081  Sum_probs=93.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEec-CCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~-~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      |+||||+|+||.+|+.+++.+.+ ++.++.+.++.+ ...|+...++.+.  .  +.+-++..+....    .+.|+++ 
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~--~--~~v~~~~~~~~~~----~~~Divf-   71 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGK--S--IGVPEDAADEFVF----SDVDIVF-   71 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCc--c--ccCcccccccccc----ccCCEEE-
Confidence            57999999999999999999988 888887766664 4567764444431  1  2333322222221    3799888 


Q ss_pred             ccCc-hhHHHHHHHHHHCCCcEEEeCCCC-------------CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHH
Q 027650          113 FTDA-STVYDNVKQATAFGMRSVVYVPHI-------------QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (220)
Q Consensus       113 fT~p-~~~~~~~~~al~~G~~vVigTtG~-------------~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~  178 (220)
                      |+.+ +...++...+.++|..||--+..|             +++.   |.+.-+ +| .++..||=|.-. ++. ..+-
T Consensus        72 ~~ag~~~s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~---l~~~~~-rg-~IianpNCst~~-l~~-aL~P  144 (334)
T COG0136          72 FAAGGSVSKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEH---LIDYQK-RG-FIIANPNCSTIQ-LVL-ALKP  144 (334)
T ss_pred             EeCchHHHHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHH---HHhhhh-CC-CEEECCChHHHH-HHH-HHHH
Confidence            7776 444788899999998887665543             4444   444433 33 578889977655 222 2222


Q ss_pred             hcCCCCCeEEEeccCCCCCCCCchhhH
Q 027650          179 ASFHYKNVEIVESRPNARMQLKSPTTS  205 (220)
Q Consensus       179 ~~~~~~diEIiE~HH~~K~DaPSGTA~  205 (220)
                      +-+. +.   +|.-|..-..|-||.=.
T Consensus       145 L~~~-~~---i~~v~VsTyQAvSGAG~  167 (334)
T COG0136         145 LHDA-FG---IKRVVVSTYQAVSGAGA  167 (334)
T ss_pred             HHhh-cC---ceEEEEEEeehhhhcCc
Confidence            3211 11   34444445556676655

>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]

Probab=98.13  E-value=1.5e-05  Score=69.39  Aligned_cols=162  Identities=17%  Similarity=0.202  Sum_probs=123.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..||.+-|.+|+-|..|.+...+. +..+||.+.+...|.         ..+|.|+|.+..|+.++    .++|.-+.|-
T Consensus        38 ~TkVi~QGfTGKqgTFHs~q~~eY-gTk~VgG~~pkK~Gt---------~HLG~PVF~sV~eA~~~----t~a~AsvIyV  103 (329)
T KOG1255|consen   38 DTKVICQGFTGKQGTFHSQQALEY-GTKVVGGVNPKKGGT---------THLGLPVFNSVAEAKKE----TGADASVIYV  103 (329)
T ss_pred             CceEEEecccCCccceeHHHHHHh-CCceeeccCCCcCcc---------cccCchhhhhHHHHHHh----hCCCceEEEe
Confidence            359999999999999999987764 889999998866443         26788999999999875    7899877799


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEEe--c
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE--S  191 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIiE--~  191 (220)
                      +|.....-+..++++-+++++.-| |....+.-++...-...+-.-++-|| -.|+.--.         .-.|-|+-  .
T Consensus       104 Ppp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPN-CPGII~p~---------qckIGImPg~I  173 (329)
T KOG1255|consen  104 PPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPN-CPGIINPG---------QCKIGIMPGHI  173 (329)
T ss_pred             CChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCC-CCCccCcc---------ceeeccccccc
Confidence            999999999999999999988766 99888888888887776677788888 45652111         11222222  2


Q ss_pred             cCCCCC--CCCchhhHHHHHHhhhHHhhhcC
Q 027650          192 RPNARM--QLKSPTTSPTLVRSTTEKIFQQT  220 (220)
Q Consensus       192 HH~~K~--DaPSGTA~~~~~~~~~~~~~~~~  220 (220)
                      |.+.|.  =+-|||---.++.+||+-.+.|+
T Consensus       174 hk~G~IGIVSRSGTLTYEaVhQTT~vglGQs  204 (329)
T KOG1255|consen  174 HKRGKIGIVSRSGTLTYEAVHQTTQVGLGQS  204 (329)
T ss_pred             ccCCeeEEEecCCceeehhhhhhccccccce
Confidence            333332  25689988788888888777764

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.10  E-value=6.2e-05  Score=67.04  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=73.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+++|. |+||+.+++.+.+ .+++|+ ++|++.  .....+.    ..|+..+.+++++....   ..+|+||.+.+
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~-~g~~v~-v~dr~~--~~~~~~~----~~g~~~~~s~~~~~~~~---~~advVi~~vp   68 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLRE-DGHEVV-GYDVNQ--EAVDVAG----KLGITARHSLEELVSKL---EAPRTIWVMVP   68 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHHhC---CCCCEEEEEec
Confidence            48999996 9999999999876 478877 578642  2222232    34667788999887520   13799887766


Q ss_pred             ch-hHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 027650          116 AS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (220)
Q Consensus       116 p~-~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvi  161 (220)
                      ++ .+.+.+...   ++.| .+||-++..++++..++.+..++.|+..+=
T Consensus        69 ~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~vd  117 (299)
T PRK12490         69 AGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYVD  117 (299)
T ss_pred             CchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence            65 333433333   2334 466666666666667777777777776553

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.10  E-value=5.6e-05  Score=66.53  Aligned_cols=118  Identities=11%  Similarity=0.116  Sum_probs=74.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      |||+++|+ |+||..+++.+.+..   ..++. ++++.. .+.+..+.   ..+|+.++.+..++..      ++|+||-
T Consensus         4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~-~~~~~~l~---~~~g~~~~~~~~e~~~------~aDvVil   71 (279)
T PRK07679          4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSN-ETRLQELH---QKYGVKGTHNKKELLT------DANILFL   71 (279)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCC-HHHHHHHH---HhcCceEeCCHHHHHh------cCCEEEE
Confidence            59999996 999999999988653   24444 466532 11222332   1346667788888775      7899997


Q ss_pred             ccCchhHHHHHHHHH---HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc-CCCcHHH
Q 027650          113 FTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-PTLSIGS  169 (220)
Q Consensus       113 fT~p~~~~~~~~~al---~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia-pNfS~Gv  169 (220)
                      +..|....+.+....   +.+.-+|.-..|.+.+++.++.   . .+.|++.+ ||+...+
T Consensus        72 av~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~---~-~~~~v~r~mPn~~~~~  128 (279)
T PRK07679         72 AMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLL---Q-KDVPIIRAMPNTSAAI  128 (279)
T ss_pred             EeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc---C-CCCeEEEECCCHHHHH
Confidence            778877766665443   3344444334788887655533   2 34677755 7765333

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=98.08  E-value=1.1e-05  Score=73.55  Aligned_cols=96  Identities=21%  Similarity=0.188  Sum_probs=64.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchh-hh---hc----CCCCCCcccc-
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIG-MV---CD----MEQPLEIPVM-   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g-~l---~g----~~~~~gv~v~-   91 (220)
                      ++||||+|+ ||||+.++|.+.+.|+++|+++.|+..              .|+--+ ++   .|    .+ ...+.++ 
T Consensus         5 ~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~-g~~i~v~~   82 (338)
T PLN02358          5 KIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFG-EKPVTVFG   82 (338)
T ss_pred             ceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEEC-CEEEEEEE
Confidence            589999997 999999999998889999999998421              122111 11   00    00 0112222 


Q ss_pred             -CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEE
Q 027650           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (220)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi  135 (220)
                       .|++++--   .+.++|+||++|......+.+...+++|...|+
T Consensus        83 ~~~p~~~~w---~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vi  124 (338)
T PLN02358         83 IRNPEDIPW---GEAGADFVVESTGVFTDKDKAAAHLKGGAKKVV  124 (338)
T ss_pred             cCCcccCcc---cccCCCEEEEcccchhhHHHHHHHHHCCCEEEE
Confidence             23444321   013799999889888889999999999975554

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=98.07  E-value=5.7e-05  Score=71.23  Aligned_cols=113  Identities=18%  Similarity=0.236  Sum_probs=85.4

Q ss_pred             ceEEEEcCC---CHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650           36 IKVIINGAV---KEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      -+|+|+|++   |++|..+.+.+.+. ++  ++.. +.+..     .+      -.|+++|.+++++-.      .+|++
T Consensus         8 ~siavvGaS~~~~~~g~~~~~~l~~~-gf~g~v~~-Vnp~~-----~~------i~G~~~~~sl~~lp~------~~Dla   68 (447)
T TIGR02717         8 KSVAVIGASRDPGKVGYAIMKNLIEG-GYKGKIYP-VNPKA-----GE------ILGVKAYPSVLEIPD------PVDLA   68 (447)
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHhC-CCCCcEEE-ECCCC-----Cc------cCCccccCCHHHCCC------CCCEE
Confidence            379999997   78999999999864 44  4543 44431     12      347899999999853      79998


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEE-EeCCCCCH------HHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSV-VYVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vV-igTtG~~~------e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      |.+++++.+.+.++.|.+.|++.+ +-+.||.+      +..++|.++|+++|+.++= || ++|+
T Consensus        69 vi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG-Pn-c~G~  132 (447)
T TIGR02717        69 VIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG-PN-CLGI  132 (447)
T ss_pred             EEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe-cC-eeeE
Confidence            989999999999999999998765 45667754      2347899999999888764 66 4554

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.06  E-value=5.5e-05  Score=66.77  Aligned_cols=118  Identities=10%  Similarity=0.063  Sum_probs=74.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      |+||+|+|+ |.||..+++.+.+...   .+++....+..  .....+..   .. ++.++.+.++++.      ++|+|
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~--~~~~~l~~---~~~~~~~~~~~~e~~~------~aDvV   68 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKN--EHFNQLYD---KYPTVELADNEAEIFT------KCDHS   68 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcH--HHHHHHHH---HcCCeEEeCCHHHHHh------hCCEE
Confidence            679999997 9999999999876531   46665433221  11222211   12 3445678887765      79999


Q ss_pred             EEccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc-CCCcHHH
Q 027650          111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-PTLSIGS  169 (220)
Q Consensus       111 IDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia-pNfS~Gv  169 (220)
                      |.+.+|..+.+.+..+   +..++.+|+-.-|.+.++++++   ...  .+++.+ ||...-+
T Consensus        69 ilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~---~~~--~~vvR~MPN~~~~~  126 (277)
T PRK06928         69 FICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEI---TPG--LQVSRLIPSLTSAV  126 (277)
T ss_pred             EEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHH---cCC--CCEEEEeCccHHHH
Confidence            9778888777766644   4467777775668988765553   322  355533 8866554

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.03  E-value=0.00012  Score=65.23  Aligned_cols=118  Identities=13%  Similarity=0.091  Sum_probs=75.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+++|. |.||+.+++.+.+. +.+|+ ++|++.  .....+.    ..|+.++++++++.+..   .++|+||-+.+
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~-g~~v~-v~dr~~--~~~~~~~----~~g~~~~~~~~e~~~~~---~~~dvvi~~v~   68 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRG-GHEVV-GYDRNP--EAVEALA----EEGATGADSLEELVAKL---PAPRVVWLMVP   68 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHC-CCeEE-EEECCH--HHHHHHH----HCCCeecCCHHHHHhhc---CCCCEEEEEec
Confidence            48999996 99999999998864 78875 477642  2222332    34677788999887520   13798885555


Q ss_pred             ch-hHHHHH---HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          116 AS-TVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       116 p~-~~~~~~---~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      +. .+.+.+   ...++.|. +||-++..+++...++.+.+++.|+..+=+|...
T Consensus        69 ~~~~~~~v~~~l~~~l~~g~-ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG  122 (301)
T PRK09599         69 AGEITDATIDELAPLLSPGD-IVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSG  122 (301)
T ss_pred             CCcHHHHHHHHHHhhCCCCC-EEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCc
Confidence            44 333333   33344454 4444444445566677788888888887666643

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=98.01  E-value=2e-05  Score=71.55  Aligned_cols=97  Identities=23%  Similarity=0.220  Sum_probs=63.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecCCC-------------Ccchhhh--hc----CCCCCCcccc--C
Q 027650           37 KVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSV-------------GEDIGMV--CD----MEQPLEIPVM--S   92 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~-------------g~d~g~l--~g----~~~~~gv~v~--~   92 (220)
                      ||||+|+ ||+|+.+.|++.+.   ++++++++.|....             |+--+++  .|    .+ ...+.++  .
T Consensus         1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~i~v~~~~   78 (325)
T TIGR01532         1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVN-GDCIRVLHSP   78 (325)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEEC-CeEEEEEEcC
Confidence            6999998 99999999998875   46999999873210             1100000  00    00 0123333  3


Q ss_pred             CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCC-CcEEEeCC
Q 027650           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP  138 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigTt  138 (220)
                      +++++-..   +.++|+|+++|.+....+.+..++++| +.|++..|
T Consensus        79 ~p~~~~w~---~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP  122 (325)
T TIGR01532        79 TPEALPWR---ALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP  122 (325)
T ss_pred             Chhhcccc---ccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence            56655321   138999999999999999999999999 55555555

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.01  E-value=3.7e-05  Score=68.25  Aligned_cols=121  Identities=19%  Similarity=0.236  Sum_probs=68.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC----------CCCCCccccCCHHHHHhccccC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM----------EQPLEIPVMSDLTMVLGSISQS  104 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~----------~~~~gv~v~~dl~~~l~~~~~~  104 (220)
                      ||||+|+|+ |.||..++..+... +.++ .++++..  ..+..+...          ....++...+++++++.     
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~-g~~V-~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   70 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARN-GHDV-TLWARDP--EQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA-----   70 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCEE-EEEECCH--HHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh-----
Confidence            679999997 99999999988764 6775 4566521  111111100          00114555678887775     


Q ss_pred             CCccEEEEccCchhHHHHHHHHH---HCCCcEEEeCCCCCHHHHHHHHHHhhh-----cCceEEEcCCCc
Q 027650          105 KARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDK-----ASMGCLIAPTLS  166 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTtG~~~e~~~~L~~aA~~-----~~v~vviapNfS  166 (220)
                       ++|+||-++.+....+.+....   ..+..+|.-+.|++++...++.+..++     ....++..|++.
T Consensus        71 -~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~  139 (325)
T PRK00094         71 -DADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFA  139 (325)
T ss_pred             -CCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHH
Confidence             7899996666654444443333   344445543336665443333333332     134566678754

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.99  E-value=4.6e-05  Score=69.85  Aligned_cols=87  Identities=18%  Similarity=0.242  Sum_probs=61.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCcccc-CCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVI  111 (220)
                      +||+|+||||..|+++++++.++|+++   |..+......|+.+. +.+    ..+.+. .+.++. .      +.|+|+
T Consensus         6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~-~~~----~~l~v~~~~~~~~-~------~~Divf   73 (347)
T PRK06728          6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQ-FKG----REIIIQEAKINSF-E------GVDIAF   73 (347)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCee-eCC----cceEEEeCCHHHh-c------CCCEEE
Confidence            799999999999999999999899999   666655555666552 221    133332 133333 3      799998


Q ss_pred             EccCchhH-HHHHHHHHHCCCcEEE
Q 027650          112 DFTDASTV-YDNVKQATAFGMRSVV  135 (220)
Q Consensus       112 DfT~p~~~-~~~~~~al~~G~~vVi  135 (220)
                       |+.|... .+.+..+.++|+.||-
T Consensus        74 -~a~~~~~s~~~~~~~~~~G~~VID   97 (347)
T PRK06728         74 -FSAGGEVSRQFVNQAVSSGAIVID   97 (347)
T ss_pred             -ECCChHHHHHHHHHHHHCCCEEEE
Confidence             6655554 6777888899987773

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.98  E-value=0.00013  Score=64.41  Aligned_cols=112  Identities=17%  Similarity=0.163  Sum_probs=73.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (220)
                      ||+|+|. |.||+.+++.+... ++++. ++|+..  .....+.    ..|+...+++++++.      ++|+||.+.+.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKA-GYQLH-VTTIGP--EVADELL----AAGAVTAETARQVTE------QADVIFTMVPD   65 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHC-CCeEE-EEcCCH--HHHHHHH----HCCCcccCCHHHHHh------cCCEEEEecCC
Confidence            6999996 99999999988764 78876 567542  2233332    235556678888875      79999955444


Q ss_pred             hhHHHHHH-------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          117 STVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       117 ~~~~~~~~-------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      ....+.+.       ..+..|. +|+-++..++...++|.+..++.|+.++-+|=
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv  119 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKGIDYLDAPV  119 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCCEEecCC
Confidence            33333221       1123343 44455566677778888888888888887663

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=97.92  E-value=8.2e-05  Score=68.97  Aligned_cols=97  Identities=14%  Similarity=0.108  Sum_probs=62.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCc-------------------chhhhhcCCCCCCcccc---
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGE-------------------DIGMVCDMEQPLEIPVM---   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~-------------------d~g~l~g~~~~~gv~v~---   91 (220)
                      |.||+|.|+||.+|+.+++.+.+.| .++|++++.......                   ...++...-...++.++   
T Consensus         1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            5699999999999999999998876 699999984211000                   00011000000112222   


Q ss_pred             CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEE
Q 027650           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (220)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi  135 (220)
                      +.+.+++..    .++|+|+....-....+....|+++|++|.+
T Consensus        81 ~~~~~l~~~----~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL  120 (385)
T PRK05447         81 EGLCELAAL----PEADVVVAAIVGAAGLLPTLAAIRAGKRIAL  120 (385)
T ss_pred             hHHHHHhcC----CCCCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence            234455542    4689999666555567778999999999998

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.92  E-value=9.9e-05  Score=64.11  Aligned_cols=112  Identities=17%  Similarity=0.198  Sum_probs=70.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |||+++|+ |.||..+++.+.+. +.    +++...++..  .....+.    ..|+.+.++.+++..      ++|+||
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~-g~~~~~~i~v~~~r~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi   66 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVAS-GVVPPSRISTADDSNP--ARRDVFQ----SLGVKTAASNTEVVK------SSDVII   66 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHC-CCCCcceEEEEeCCCH--HHHHHHH----HcCCEEeCChHHHHh------cCCEEE
Confidence            68999996 99999999998764 33    6654336532  2222222    346777888888875      789999


Q ss_pred             EccCchhHHHHHHHHH---HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCc
Q 027650          112 DFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLS  166 (220)
Q Consensus       112 DfT~p~~~~~~~~~al---~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS  166 (220)
                      .+..|....+.+....   ..+.-+|.-+.|.+.++.+   +....  .+++ ..||..
T Consensus        67 l~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~---~~~~~--~~vvr~mP~~~  120 (266)
T PLN02688         67 LAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQ---EWAGG--RRVVRVMPNTP  120 (266)
T ss_pred             EEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHH---HHcCC--CCEEEECCCcH
Confidence            8887777666665443   3454445434577766544   33322  1555 467753

>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type

Probab=97.89  E-value=0.00016  Score=65.74  Aligned_cols=133  Identities=18%  Similarity=0.194  Sum_probs=87.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHH---hc-------------------CCcEEEEEEec--CCCCcchhhhhcCCC-------
Q 027650           36 IKVIINGAVKEIGRAAVIAVT---KA-------------------RGMEVAGAIDS--HSVGEDIGMVCDMEQ-------   84 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~---~~-------------------~~~eLvg~vd~--~~~g~d~g~l~g~~~-------   84 (220)
                      +||+|+|. |+-.+.++.-+.   ..                   .|+|+|+++|-  .+.|+|+.+..-...       
T Consensus         1 irvai~Gv-GncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~   79 (351)
T TIGR03450         1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIA   79 (351)
T ss_pred             CeEEEEec-cHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeee
Confidence            69999997 999999987553   21                   16799999995  568988876543210       


Q ss_pred             ---CCCcccc-----C------------------CHHHHHhccccCCCccEEEEccC---chhHHHHHHHHHHCCCcEEE
Q 027650           85 ---PLEIPVM-----S------------------DLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRSVV  135 (220)
Q Consensus        85 ---~~gv~v~-----~------------------dl~~~l~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~vVi  135 (220)
                         +.||.|.     +                  |.-+.|.+    .++||+|.+-+   -.+..-++.+|++.|++.|-
T Consensus        80 ~vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk~----~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN  155 (351)
T TIGR03450        80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKD----AKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVN  155 (351)
T ss_pred             ccCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHHh----cCCCEEEECCccchHHHHHHHHHHHHHcCCceEe
Confidence               1133221     1                  23333443    68999997654   33445677899999999999


Q ss_pred             eCCCCCHHHHHHHHHHhhhcCceEEEcCCCc-HHHHHHHH
Q 027650          136 YVPHIQLETVSALSAFCDKASMGCLIAPTLS-IGSILLQQ  174 (220)
Q Consensus       136 gTtG~~~e~~~~L~~aA~~~~v~vviapNfS-~Gv~ll~~  174 (220)
                      ++|-+... ..++.+.++++|+|++=.=--| +|..++..
T Consensus       156 ~~P~~ia~-~p~~a~~f~e~glPi~GDD~Ksq~GaTi~h~  194 (351)
T TIGR03450       156 ALPVFIAS-DPEWAKKFTDAGVPIVGDDIKSQVGATITHR  194 (351)
T ss_pred             ccCccccC-CHHHHHHHHHCCCCEecccccccCCCchHHH
Confidence            99965432 2457777788899977221113 67666544

This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.89  E-value=0.00027  Score=63.03  Aligned_cols=111  Identities=15%  Similarity=0.165  Sum_probs=74.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+++|. |+||..+++.+.+. ++++. +++++.   +...+.    ..|+....+..++..      .+|+||-+.+
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~-G~~v~-v~~~~~---~~~~~~----~~g~~~~~s~~~~~~------~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARA-GHQLH-VTTIGP---VADELL----SLGAVSVETARQVTE------ASDIIFIMVP   64 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHC-CCeEE-EEeCCH---hHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence            48999996 99999999998764 67776 566532   122232    245666778888775      7999885443


Q ss_pred             ch-hHHHHHH------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650          116 AS-TVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus       116 p~-~~~~~~~------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                      .+ .+.+.+.      ..+..| .+|+-++..++++..++.+.+++.|+.++=+|
T Consensus        65 ~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP  118 (292)
T PRK15059         65 DTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAP  118 (292)
T ss_pred             ChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence            33 2233321      112334 35666777888888999999888888887766

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.89  E-value=0.00011  Score=65.10  Aligned_cols=116  Identities=12%  Similarity=0.131  Sum_probs=78.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC--cEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG--MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~--~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      |+||+++|+ |+||+.+++-+.+..-  -+-+-++++..  .....+.   +.+|+.++++.+++..      ..|+|+-
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~--e~~~~l~---~~~g~~~~~~~~~~~~------~advv~L   68 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSE--EKRAALA---AEYGVVTTTDNQEAVE------EADVVFL   68 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCH--HHHHHHH---HHcCCcccCcHHHHHh------hCCEEEE
Confidence            579999997 9999999999987652  23444555532  1111233   2566666667777765      7999998


Q ss_pred             ccCchhHHHHHHHHH--HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc-CCCcH
Q 027650          113 FTDASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-PTLSI  167 (220)
Q Consensus       113 fT~p~~~~~~~~~al--~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia-pNfS~  167 (220)
                      ...|....+.+..+.  ..++.+|+=..|.+-++++.   +.-  +.+++.. ||..-
T Consensus        69 avKPq~~~~vl~~l~~~~~~~lvISiaAGv~~~~l~~---~l~--~~~vvR~MPNt~a  121 (266)
T COG0345          69 AVKPQDLEEVLSKLKPLTKDKLVISIAAGVSIETLER---LLG--GLRVVRVMPNTPA  121 (266)
T ss_pred             EeChHhHHHHHHHhhcccCCCEEEEEeCCCCHHHHHH---HcC--CCceEEeCCChHH
Confidence            888988888777764  47888887777998865444   433  3566633 77543

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.88  E-value=4.7e-05  Score=61.67  Aligned_cols=124  Identities=15%  Similarity=0.161  Sum_probs=71.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------CCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      ||+|+|+ |.+|..++..+... +.++. ++.++.        .+.....+.+..-+..+.+++|++++++      ++|
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~-g~~V~-l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~ad   71 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADN-GHEVT-LWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------DAD   71 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHC-TEEEE-EETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T-S
T ss_pred             CEEEECc-CHHHHHHHHHHHHc-CCEEE-EEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------ccc
Confidence            7999997 99999999988765 44443 454421        0000001111111235667899999996      799


Q ss_pred             EEEEccCchhHHHHH---HHHHHCCCcEEEeCCCCCHHH----HHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          109 VVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQLET----VSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       109 VVIDfT~p~~~~~~~---~~al~~G~~vVigTtG~~~e~----~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      ++|-.++...+.+.+   ..+++.+..+|+-+-|+....    .+.+++......+.++.-|||+--+
T Consensus        72 ~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei  139 (157)
T PF01210_consen   72 IIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEI  139 (157)
T ss_dssp             EEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHH
T ss_pred             EEEecccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHH
Confidence            988555655554444   444568888888776883211    1334454444446777779988766

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.87  E-value=0.00027  Score=63.00  Aligned_cols=115  Identities=13%  Similarity=0.073  Sum_probs=68.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+++|+ |+||..+++.+.+ .+.++++ +|++.  .....+.    ..++..+.+++++...+   ..+|+||-+.+
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~-~g~~V~~-~dr~~--~~~~~l~----~~g~~~~~s~~~~~~~~---~~~dvIi~~vp   68 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAK-RGHDCVG-YDHDQ--DAVKAMK----EDRTTGVANLRELSQRL---SAPRVVWVMVP   68 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH----HcCCcccCCHHHHHhhc---CCCCEEEEEcC
Confidence            48999996 9999999999876 4788865 77642  2223333    22444456776665321   26899886666


Q ss_pred             chhHHHHH---HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650          116 ASTVYDNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus       116 p~~~~~~~---~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                      +..+.+.+   ...++.|.-+|-.+++... +..++.+..++.|+..+=+|
T Consensus        69 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~-~t~~~~~~~~~~g~~~vda~  118 (298)
T TIGR00872        69 HGIVDAVLEELAPTLEKGDIVIDGGNSYYK-DSLRRYKLLKEKGIHLLDCG  118 (298)
T ss_pred             chHHHHHHHHHHhhCCCCCEEEECCCCCcc-cHHHHHHHHHhcCCeEEecC
Confidence            55444443   3344566555554455433 33444445555677666444

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.86  E-value=5.2e-05  Score=69.21  Aligned_cols=99  Identities=20%  Similarity=0.182  Sum_probs=66.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhhhcCC-----CCCCcccc--CC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMVCDME-----QPLEIPVM--SD   93 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------------~~g~d~g~l~g~~-----~~~gv~v~--~d   93 (220)
                      ++||||+|. ||+||.+.|++.+.+++++|++-|+.              -.|+--+++.--+     ....++++  .|
T Consensus         2 ~~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~d   80 (337)
T PTZ00023          2 VVKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKD   80 (337)
T ss_pred             ceEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCC
Confidence            479999996 99999999998877899999997621              0122111110000     01123333  45


Q ss_pred             HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                      ++++-..   +.++|+|+++|......+.+..++++|...|+=+
T Consensus        81 p~~lpW~---~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iS  121 (337)
T PTZ00023         81 PAAIPWG---KNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMS  121 (337)
T ss_pred             hhhCCcc---ccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeC
Confidence            6665431   2489999988888888899999999998777644

>PRK07680 late competence protein ComER; Validated

Probab=97.86  E-value=0.00019  Score=62.96  Aligned_cols=100  Identities=10%  Similarity=0.124  Sum_probs=63.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      |||+|+|+ |.||+.+++.+.+...+  +-+.+++++.  .....+..   .. ++.++.+.++++.      ++|+||.
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~--~~~~~~~~---~~~g~~~~~~~~~~~~------~aDiVil   68 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTP--AKAYHIKE---RYPGIHVAKTIEEVIS------QSDLIFI   68 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCH--HHHHHHHH---HcCCeEEECCHHHHHH------hCCEEEE
Confidence            48999997 99999999998765322  3455677642  22222221   22 5667788888775      7999997


Q ss_pred             ccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHH
Q 027650          113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSA  147 (220)
Q Consensus       113 fT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~  147 (220)
                      ++.|....+.+...   +..+..+|.-+.|.+.++++.
T Consensus        69 av~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~  106 (273)
T PRK07680         69 CVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET  106 (273)
T ss_pred             ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence            77777766666543   334544443344676554443

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.85  E-value=0.00027  Score=62.91  Aligned_cols=116  Identities=11%  Similarity=0.116  Sum_probs=76.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |.||+++|. |+||..+++.+... +.++. ++|++.  ....++.    ..++....++.++..      ++|+||.+.
T Consensus         1 m~~Ig~IGl-G~mG~~mA~~l~~~-G~~V~-v~d~~~--~~~~~~~----~~g~~~~~s~~~~~~------~aDvVi~~v   65 (296)
T PRK15461          1 MAAIAFIGL-GQMGSPMASNLLKQ-GHQLQ-VFDVNP--QAVDALV----DKGATPAASPAQAAA------GAEFVITML   65 (296)
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHC-CCeEE-EEcCCH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEec
Confidence            458999996 99999999998764 67764 567642  2233332    235566778888775      789988665


Q ss_pred             CchhHHHHHH-------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          115 DASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       115 ~p~~~~~~~~-------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      +++...+.+.       ..+..|. +|+-++..++++.+++.+..++.|+..+=+|-+.
T Consensus        66 p~~~~~~~vl~~~~~i~~~l~~g~-lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g  123 (296)
T PRK15461         66 PNGDLVRSVLFGENGVCEGLSRDA-LVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR  123 (296)
T ss_pred             CCHHHHHHHHcCcccHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCC
Confidence            5554333331       1223443 4455666677888888888888888877666544

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.82  E-value=0.00039  Score=62.34  Aligned_cols=99  Identities=18%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--------CcchhhhhcCCCCCCccccCCHHHHHhccccCCCc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--------GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--------g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (220)
                      |||+|+|+ |.||..++..+.+. +.++. +++++..        +.....+.+...+.++.+++++++.+.     ..+
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~-g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSK-KISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLS-----DNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHC-CCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHh-----CCC
Confidence            58999998 99999999988764 56664 5665310        000100112111234557788888764     278


Q ss_pred             cEEEEccCchhHHHHHHHHHH----CCCcEEEeCCCCCH
Q 027650          108 AVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQL  142 (220)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~----~G~~vVigTtG~~~  142 (220)
                      |++|.++.+..+.+.++....    .+..+|+-+-|+..
T Consensus        73 Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         73 TCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             CEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            999967776666665555443    35567776668744

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.81  E-value=9.9e-05  Score=63.75  Aligned_cols=118  Identities=18%  Similarity=0.215  Sum_probs=77.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC-ccc-----cCCHHHHHhccc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IPV-----MSDLTMVLGSIS  102 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~g-v~v-----~~dl~~~l~~~~  102 (220)
                      +.+||+|.|. |.+|+.+++.+.+ .+++++++.|+     +..|-|..++.......+ +.-     +-+.++++.   
T Consensus        30 ~~~~v~I~G~-G~VG~~~a~~L~~-~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~---  104 (227)
T cd01076          30 AGARVAIQGF-GNVGSHAARFLHE-AGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE---  104 (227)
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---
Confidence            4589999996 9999999998876 49999999995     345667666553211111 111     123455555   


Q ss_pred             cCCCccEEEEccCchhHH-HHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650          103 QSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (220)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~-~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS~  167 (220)
                        .++||+|.++.++..- +++.   +-...+|+|--  .++++..+.|    ++  -.+++.|.|..
T Consensus       105 --~~~Dvlip~a~~~~i~~~~~~---~l~a~~I~egAN~~~t~~a~~~L----~~--rGi~~~PD~~a  161 (227)
T cd01076         105 --LDCDILIPAALENQITADNAD---RIKAKIIVEAANGPTTPEADEIL----HE--RGVLVVPDILA  161 (227)
T ss_pred             --ecccEEEecCccCccCHHHHh---hceeeEEEeCCCCCCCHHHHHHH----HH--CCCEEEChHHh
Confidence              3899999999777663 4444   33589999876  4665544444    34  36666677654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.80  E-value=2.5e-05  Score=61.88  Aligned_cols=95  Identities=21%  Similarity=0.243  Sum_probs=52.4

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ...+||+|+|+ ||+|..+.+++.+ .++++++++.+.... +.+....      +-..+.++++++.      ++|+++
T Consensus         8 ~~~l~I~iIGa-GrVG~~La~aL~~-ag~~v~~v~srs~~sa~~a~~~~------~~~~~~~~~~~~~------~aDlv~   73 (127)
T PF10727_consen    8 AARLKIGIIGA-GRVGTALARALAR-AGHEVVGVYSRSPASAERAAAFI------GAGAILDLEEILR------DADLVF   73 (127)
T ss_dssp             ----EEEEECT-SCCCCHHHHHHHH-TTSEEEEESSCHH-HHHHHHC--------TT-----TTGGGC------C-SEEE
T ss_pred             CCccEEEEECC-CHHHHHHHHHHHH-CCCeEEEEEeCCccccccccccc------ccccccccccccc------cCCEEE
Confidence            56799999998 9999999999876 489999988753211 1122221      2122446777765      799988


Q ss_pred             EccCchhHHHHH-HHHHHC----CCcEEEeCCCCCH
Q 027650          112 DFTDASTVYDNV-KQATAF----GMRSVVYVPHIQL  142 (220)
Q Consensus       112 DfT~p~~~~~~~-~~al~~----G~~vVigTtG~~~  142 (220)
                       .|.|+...+.+ ......    .=.+|+=|.|-..
T Consensus        74 -iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa~~  108 (127)
T PF10727_consen   74 -IAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGALG  108 (127)
T ss_dssp             -E-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred             -EEechHHHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence             67777775544 444433    1347778887543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=97.79  E-value=7.2e-05  Score=68.13  Aligned_cols=98  Identities=26%  Similarity=0.219  Sum_probs=65.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhc------CCCCCCcccc--CC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCD------MEQPLEIPVM--SD   93 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~l~g------~~~~~gv~v~--~d   93 (220)
                      ++||+|+|. ||+||.+.|.+.+.+++|+|++=|..             -.|+--+++.-      .+ ...+.++  .+
T Consensus         2 ~~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~-g~~I~v~~~~d   79 (331)
T PRK15425          2 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVN-GKKIRVTAERD   79 (331)
T ss_pred             ceEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEEC-CeEEEEEEcCC
Confidence            379999996 99999999998878899999998721             01221111100      00 0123333  25


Q ss_pred             HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                      ++++--.   +.++|+||++|-.....+.+...+++|...|+=+
T Consensus        80 p~~~~w~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS  120 (331)
T PRK15425         80 PANLKWD---EVGVDVVAEATGLFLTDETARKHITAGAKKVVMT  120 (331)
T ss_pred             hhhCccc---ccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeC
Confidence            6665431   1379999988888888899999999997777544

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.78  E-value=0.00015  Score=64.08  Aligned_cols=117  Identities=10%  Similarity=0.115  Sum_probs=72.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +||+++|+ |+||..+++.+.+..   ..++. +++++.  ..+..+..   .+|+.++++.++++.      ++|+||-
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~-v~~r~~--~~~~~l~~---~~g~~~~~~~~e~~~------~aDiIiL   69 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQII-CSDLNV--SNLKNASD---KYGITITTNNNEVAN------SADILIL   69 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEE-EECCCH--HHHHHHHH---hcCcEEeCCcHHHHh------hCCEEEE
Confidence            58999997 999999999987642   22444 456532  22333321   246666778888775      7899997


Q ss_pred             ccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHHH
Q 027650          113 FTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS  169 (220)
Q Consensus       113 fT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~Gv  169 (220)
                      +..|....+.+...   ++.+.-+|.=-.|.+-++++++-   . ...+++ .-||...-+
T Consensus        70 avkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l---~-~~~~vvR~MPN~~~~v  126 (272)
T PRK12491         70 SIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEF---D-RKLKVIRVMPNTPVLV  126 (272)
T ss_pred             EeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhc---C-CCCcEEEECCChHHHH
Confidence            88887777766544   33344444444589887655433   2 123444 338866544

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.74  E-value=0.00025  Score=64.41  Aligned_cols=126  Identities=17%  Similarity=0.183  Sum_probs=84.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--C-----CC-cchhhhhcCCCCCCccccCCHHHHHhccccCCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--S-----VG-EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--~-----~g-~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      |+||+|+|+ |..|..++..+.+.- .++. .+.++  .     .. ++..-+.|..-+.++..++|++++++      +
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng-~~V~-lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~------~   71 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNG-HEVR-LWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALD------G   71 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcC-CeeE-EEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHh------c
Confidence            579999997 999999999887653 2222 23221  0     00 11111223323456777999999996      7


Q ss_pred             ccEEEEccCchhH-HHHHHH---HHHCCCcEEEeCCCCCHHHHHHHHHHhhh----cCceEEEcCCCcHHHH
Q 027650          107 RAVVIDFTDASTV-YDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDK----ASMGCLIAPTLSIGSI  170 (220)
Q Consensus       107 ~DVVIDfT~p~~~-~~~~~~---al~~G~~vVigTtG~~~e~~~~L~~aA~~----~~v~vviapNfS~Gv~  170 (220)
                      +|+|+ +..|... .+.++.   .++.+..+|+.+-|+.++....+.+..++    .-+.++.-|||+--+.
T Consensus        72 ad~iv-~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa  142 (329)
T COG0240          72 ADIIV-IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVA  142 (329)
T ss_pred             CCEEE-EECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHh
Confidence            99988 5655544 444443   55788999998889988777777777765    1255566699998884

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=97.73  E-value=9.6e-05  Score=69.48  Aligned_cols=99  Identities=23%  Similarity=0.181  Sum_probs=63.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhh--c-----CCCCCCcccc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVC--D-----MEQPLEIPVM   91 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~l~--g-----~~~~~gv~v~   91 (220)
                      +++||+|+|. ||+||.+.|.+.+.  +++|+|++=|..             -.|+--+++.  .     .+ ...+.++
T Consensus        74 ~~ikVgINGF-GRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~-Gk~I~V~  151 (442)
T PLN02237         74 AKLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVD-GKPIKVV  151 (442)
T ss_pred             ceEEEEEECC-ChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEEC-CEEEEEE
Confidence            4599999996 99999999987755  689999987621             0121111110  0     00 0112332


Q ss_pred             C--CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650           92 S--DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus        92 ~--dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                      .  |+.++-.   .+.++|+||++|-.....+.+...++.|...|+=+
T Consensus       152 ~~~dp~~l~W---~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS  196 (442)
T PLN02237        152 SNRDPLKLPW---AELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT  196 (442)
T ss_pred             EcCCchhCCh---hhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC
Confidence            2  3334322   01379999988888888899999999997777644

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.73  E-value=0.00036  Score=60.97  Aligned_cols=94  Identities=7%  Similarity=0.046  Sum_probs=61.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~---eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      |||+++|+ |.||..+++.+.+....   ++.+ ++++.  .          ..++....+.+++..      ++|+||-
T Consensus         4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~-~~~~~--~----------~~~~~~~~~~~~~~~------~~D~Vil   63 (260)
T PTZ00431          4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYY-HTPSK--K----------NTPFVYLQSNEELAK------TCDIIVL   63 (260)
T ss_pred             CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEE-ECCCh--h----------cCCeEEeCChHHHHH------hCCEEEE
Confidence            69999997 99999999999865322   3433 44321  0          112334556667664      7899998


Q ss_pred             ccCchhHHHHHHHHHH--CCCcEEEeCCCCCHHHHHHHH
Q 027650          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALS  149 (220)
Q Consensus       113 fT~p~~~~~~~~~al~--~G~~vVigTtG~~~e~~~~L~  149 (220)
                      ++.|....+.+.....  .+..+|+=..|.+.++.+++.
T Consensus        64 avkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~  102 (260)
T PTZ00431         64 AVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMV  102 (260)
T ss_pred             EeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHc
Confidence            8888887776665442  244566656688877666553

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=97.73  E-value=7.8e-05  Score=68.04  Aligned_cols=98  Identities=22%  Similarity=0.224  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecC-------------CCCcchhhh------hcCCCCCCcccc-
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSH-------------SVGEDIGMV------CDMEQPLEIPVM-   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~-------------~~g~d~g~l------~g~~~~~gv~v~-   91 (220)
                      |+||||+|+ ||+||.+.|.+.+.   ++++|+++=|..             ..|+--+++      +-.+ ...+.++ 
T Consensus         1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~-g~~i~v~~   78 (336)
T PRK13535          1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVG-DDAIRLLH   78 (336)
T ss_pred             CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEE
Confidence            689999998 99999999998764   589999876520             011110110      0010 1123333 


Q ss_pred             -CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                       .+++++-..   +.++|+|+++|......+.+..++++|...|+=+
T Consensus        79 ~~~p~~~~w~---~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iS  122 (336)
T PRK13535         79 ERDIASLPWR---ELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFS  122 (336)
T ss_pred             cCCcccCccc---ccCCCEEEEccchhhhHHHHHHHHHcCCEEEEec
Confidence             255555331   1389999988888888999999999997776544

>PLN02256 arogenate dehydrogenase

Probab=97.72  E-value=0.00057  Score=61.46  Aligned_cols=120  Identities=14%  Similarity=0.100  Sum_probs=72.3

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      +..++||+|+|+ |.||+.+++.+.+. +.++.+ +++...    .+..   ...|+..+++.++++.     .++|+||
T Consensus        33 ~~~~~kI~IIG~-G~mG~slA~~L~~~-G~~V~~-~d~~~~----~~~a---~~~gv~~~~~~~e~~~-----~~aDvVi   97 (304)
T PLN02256         33 KSRKLKIGIVGF-GNFGQFLAKTFVKQ-GHTVLA-TSRSDY----SDIA---AELGVSFFRDPDDFCE-----EHPDVVL   97 (304)
T ss_pred             cCCCCEEEEEee-CHHHHHHHHHHHhC-CCEEEE-EECccH----HHHH---HHcCCeeeCCHHHHhh-----CCCCEEE
Confidence            346689999996 99999999998764 678875 554321    1111   1345566788888764     2689999


Q ss_pred             EccCchhHHHHHHHH-H---HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHH
Q 027650          112 DFTDASTVYDNVKQA-T---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG  168 (220)
Q Consensus       112 DfT~p~~~~~~~~~a-l---~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~G  168 (220)
                      .+++|....+.+... .   +.+ .+|+-.......-.+.+++.... +.+++ .-|||+.-
T Consensus        98 lavp~~~~~~vl~~l~~~~l~~~-~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e  157 (304)
T PLN02256         98 LCTSILSTEAVLRSLPLQRLKRS-TLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPE  157 (304)
T ss_pred             EecCHHHHHHHHHhhhhhccCCC-CEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCC
Confidence            888887777766654 2   223 35544433323334445544321 34444 23666543

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.72  E-value=0.00052  Score=63.33  Aligned_cols=129  Identities=17%  Similarity=0.135  Sum_probs=77.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecCC--CCcch-----------hhhhcCCCCCCccccCCH
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHS--VGEDI-----------GMVCDMEQPLEIPVMSDL   94 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLvg~vd~~~--~g~d~-----------g~l~g~~~~~gv~v~~dl   94 (220)
                      .++||+|+|+ |.+|.+++..+...-      +.++. .+.++.  .+++.           .-+.|..-+.++.+++|+
T Consensus        10 ~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~-lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl   87 (365)
T PTZ00345         10 GPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVR-MWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDL   87 (365)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEE-EEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCH
Confidence            4579999997 999999999988652      13332 233321  11111           112232223356668899


Q ss_pred             HHHHhccccCCCccEEEEccCchhHHHHHHHHHH-----CCCcEEEeCCCCCHHHH--HHHHHHhhh---cCceEEEcCC
Q 027650           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-----FGMRSVVYVPHIQLETV--SALSAFCDK---ASMGCLIAPT  164 (220)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~-----~G~~vVigTtG~~~e~~--~~L~~aA~~---~~v~vviapN  164 (220)
                      +++++      ++|+||-..+|....+.+.....     .+..+|+-+-|++.++.  ..+.+..++   ..+.++.-||
T Consensus        88 ~eav~------~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs  161 (365)
T PTZ00345         88 KEAVE------DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGAN  161 (365)
T ss_pred             HHHHh------cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCC
Confidence            98886      79988866666666666655433     34456666778865442  233333332   3455567799


Q ss_pred             CcHHHH
Q 027650          165 LSIGSI  170 (220)
Q Consensus       165 fS~Gv~  170 (220)
                      |+--+.
T Consensus       162 ~A~Eva  167 (365)
T PTZ00345        162 VANDVA  167 (365)
T ss_pred             HHHHHH
Confidence            998884

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=97.71  E-value=0.0001  Score=67.36  Aligned_cols=98  Identities=21%  Similarity=0.225  Sum_probs=66.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhh--c----CCCCCCcccc--CC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVC--D----MEQPLEIPVM--SD   93 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~l~--g----~~~~~gv~v~--~d   93 (220)
                      ++||+|+|. ||+||.+.|++.+.+++|+|++-|..             -.|+--+++.  +    .+ ...+.++  .|
T Consensus         2 ~~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~-g~~I~v~~~~d   79 (343)
T PRK07729          2 KTKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVD-GKKIRLLNNRD   79 (343)
T ss_pred             ceEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEEC-CEEEEEEEcCC
Confidence            479999997 99999999998877899999997621             0122111110  0    00 1123333  36


Q ss_pred             HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                      ++++-..   +.++|+|+++|......+.+...++.|...|+=+
T Consensus        80 p~~~~W~---~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iS  120 (343)
T PRK07729         80 PKELPWT---DLGIDIVIEATGKFNSKEKAILHVEAGAKKVILT  120 (343)
T ss_pred             hhhCccc---ccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeC
Confidence            6665431   1379999988888888999999999997777644

>PLN02712 arogenate dehydrogenase

Probab=97.69  E-value=0.00053  Score=67.85  Aligned_cols=120  Identities=13%  Similarity=0.141  Sum_probs=75.4

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +.++||+|+|+ |+||+.+++.+.+. +++|++ +|+... .   +.+   ...|+..+.+++++..     ..+|+||.
T Consensus        50 ~~~~kIgIIG~-G~mG~slA~~L~~~-G~~V~~-~dr~~~-~---~~A---~~~Gv~~~~d~~e~~~-----~~aDvViL  114 (667)
T PLN02712         50 TTQLKIAIIGF-GNYGQFLAKTLISQ-GHTVLA-HSRSDH-S---LAA---RSLGVSFFLDPHDLCE-----RHPDVILL  114 (667)
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHC-CCEEEE-EeCCHH-H---HHH---HHcCCEEeCCHHHHhh-----cCCCEEEE
Confidence            55689999996 99999999998865 688866 554311 1   111   1346667788888764     26899997


Q ss_pred             ccCchhHHHHHHHHH----HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHHH
Q 027650          113 FTDASTVYDNVKQAT----AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS  169 (220)
Q Consensus       113 fT~p~~~~~~~~~al----~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~Gv  169 (220)
                      ++++....+.+....    +.| .+|+-+......-.+.+.+...+ +.+++ .-|+|+...
T Consensus       115 avP~~~~~~vl~~l~~~~l~~g-~iVvDv~SvK~~~~~~l~~~l~~-~~~~v~~HPMaG~e~  174 (667)
T PLN02712        115 CTSIISTENVLKSLPLQRLKRN-TLFVDVLSVKEFAKNLLLDYLPE-DFDIICSHPMFGPQS  174 (667)
T ss_pred             cCCHHHHHHHHHhhhhhcCCCC-eEEEECCCCcHHHHHHHHHhcCC-CCeEEeeCCcCCCcc
Confidence            888777666665442    223 35655544444334445554432 34444 448886663

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.69  E-value=8.9e-05  Score=67.80  Aligned_cols=126  Identities=15%  Similarity=0.177  Sum_probs=75.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcC-------CcEEEEEEecCC--CCcch-----------hhhhcCCCCCCccccCCHHH
Q 027650           37 KVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSHS--VGEDI-----------GMVCDMEQPLEIPVMSDLTM   96 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~-------~~eLvg~vd~~~--~g~d~-----------g~l~g~~~~~gv~v~~dl~~   96 (220)
                      ||+|+|+ |++|..++..+...-       +.++.- +.++.  .+...           ..+.|..-+.++.+++|+++
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~e   78 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRM-WVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVE   78 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEE-EEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHH
Confidence            6999997 999999999887632       133332 32210  01111           11222211234567889999


Q ss_pred             HHhccccCCCccEEEEccCchhHHHHHHH---HHHCCCcEEEeCCCCCHH--HHHHHHHHhhh---cCceEEEcCCCcHH
Q 027650           97 VLGSISQSKARAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLE--TVSALSAFCDK---ASMGCLIAPTLSIG  168 (220)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~---al~~G~~vVigTtG~~~e--~~~~L~~aA~~---~~v~vviapNfS~G  168 (220)
                      ++.      ++|++|-..++....+.+..   .++.+.++|+-+-|++.+  ....+.+..++   ..+.++.-|||+..
T Consensus        79 al~------~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~E  152 (342)
T TIGR03376        79 AAK------GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANE  152 (342)
T ss_pred             HHh------cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHH
Confidence            986      79988855555554444443   455677788877798765  44444443332   34555677999887


Q ss_pred             HH
Q 027650          169 SI  170 (220)
Q Consensus       169 v~  170 (220)
                      +.
T Consensus       153 va  154 (342)
T TIGR03376       153 VA  154 (342)
T ss_pred             HH
Confidence            73

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.66  E-value=0.00051  Score=61.38  Aligned_cols=107  Identities=19%  Similarity=0.130  Sum_probs=63.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ..|||+|+|+ |.||+.+++.+... +.++. +++++.                   ..++++++.      ++|+||-+
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~-G~~V~-~~~r~~-------------------~~~~~~~~~------~advvi~~   54 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASAN-GHRVR-VWSRRS-------------------GLSLAAVLA------DADVIVSA   54 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHC-CCEEE-EEeCCC-------------------CCCHHHHHh------cCCEEEEE
Confidence            3479999996 99999999998764 67775 566531                   135666665      79998844


Q ss_pred             cCchhHHHHHHHHH----HCCCcEEEeCCCCCHHHHHHHHHHhhh--cCceEE--EcCCCcHH
Q 027650          114 TDASTVYDNVKQAT----AFGMRSVVYVPHIQLETVSALSAFCDK--ASMGCL--IAPTLSIG  168 (220)
Q Consensus       114 T~p~~~~~~~~~al----~~G~~vVigTtG~~~e~~~~L~~aA~~--~~v~vv--iapNfS~G  168 (220)
                      .+...+.+.+....    ..++-+|..++|++++....+.+..+.  .+.|++  ..|+++.-
T Consensus        55 vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~e  117 (308)
T PRK14619         55 VSMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKE  117 (308)
T ss_pred             CChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHH
Confidence            44433334443332    335556666667765544433332221  123554  66776643

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=97.66  E-value=0.00017  Score=60.80  Aligned_cols=91  Identities=24%  Similarity=0.400  Sum_probs=67.1

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHH-HhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCC
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKA  106 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i-~~~~~~eLvg~vd~~--~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~  106 (220)
                      ..+|.+|+|+|+ |++|++++..- ....++++++++|.+  ..|..+         .+++++  ++++..+.+    .+
T Consensus        81 ~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~---------~~v~V~~~d~le~~v~~----~d  146 (211)
T COG2344          81 QDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKI---------GDVPVYDLDDLEKFVKK----ND  146 (211)
T ss_pred             CCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCccc---------CCeeeechHHHHHHHHh----cC
Confidence            356889999998 99999998754 447789999999953  333332         246664  578888774    57


Q ss_pred             ccEEEEccCchhH-HHHHHHHHHCCCcEEEeC
Q 027650          107 RAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (220)
Q Consensus       107 ~DVVIDfT~p~~~-~~~~~~al~~G~~vVigT  137 (220)
                      .|+.| .|.|..+ -+.+....++|+.-|.--
T Consensus       147 v~iai-LtVPa~~AQ~vad~Lv~aGVkGIlNF  177 (211)
T COG2344         147 VEIAI-LTVPAEHAQEVADRLVKAGVKGILNF  177 (211)
T ss_pred             ccEEE-EEccHHHHHHHHHHHHHcCCceEEec
Confidence            88888 5655555 577789999998877653

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=97.66  E-value=9.6e-05  Score=67.46  Aligned_cols=98  Identities=16%  Similarity=0.175  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhh--c----CCCCCCcccc--
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVC--D----MEQPLEIPVM--   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~l~--g----~~~~~gv~v~--   91 (220)
                      |+||+|+|. ||+||.+.|.+.+.  +++|+|++-|..             -.|+--+++.  +    .+ ...+.++  
T Consensus         1 ~~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~-g~~I~v~~~   78 (337)
T PRK07403          1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVN-GKTIKCVSD   78 (337)
T ss_pred             CeEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEEC-CEEEEEEEc
Confidence            789999996 99999999998766  689999998731             0122111110  0    00 1123333  


Q ss_pred             CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                      .|++++--.   +.++|+|+++|......+.+...++.|...|+=+
T Consensus        79 ~dp~~~~W~---~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iS  121 (337)
T PRK07403         79 RNPLNLPWK---EWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT  121 (337)
T ss_pred             CCcccCChh---hcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeC
Confidence            234554321   1379999988888888889999999997776543

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=97.64  E-value=0.00013  Score=67.86  Aligned_cols=99  Identities=19%  Similarity=0.164  Sum_probs=64.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcch-------hhhhcCCCCCCcccc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDI-------GMVCDMEQPLEIPVM   91 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~-------g~l~g~~~~~gv~v~   91 (220)
                      +++||+|+|+ ||+||.+.|.+.+.  |.++|+++=|..             ..|+--       +..+-.+ ...+.++
T Consensus        59 ~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~-gk~I~v~  136 (395)
T PLN03096         59 AKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVD-GKVIKVV  136 (395)
T ss_pred             cccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEEC-CEEEEEE
Confidence            3489999998 99999999998866  789999876521             001100       1101010 1123343


Q ss_pred             --CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650           92 --SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus        92 --~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                        .|++++-..   +.++|+||++|-.....+.+...+++|...|+=+
T Consensus       137 ~~~dp~~~~w~---~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS  181 (395)
T PLN03096        137 SDRNPLNLPWG---ELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT  181 (395)
T ss_pred             EcCCccccccc---ccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence              245555331   1379999999988888899999999997777544

>PLN02712 arogenate dehydrogenase

Probab=97.63  E-value=0.001  Score=65.94  Aligned_cols=121  Identities=17%  Similarity=0.125  Sum_probs=75.4

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ..++||+|+|+ |+||+.+++.+.+ .+.+|+ ++|++..   .....    ..|+..+.++++++.     ..+|+||-
T Consensus       367 ~~~~kIgIIGl-G~mG~slA~~L~~-~G~~V~-~~dr~~~---~~~a~----~~Gv~~~~~~~el~~-----~~aDvVIL  431 (667)
T PLN02712        367 GSKLKIAIVGF-GNFGQFLAKTMVK-QGHTVL-AYSRSDY---SDEAQ----KLGVSYFSDADDLCE-----EHPEVILL  431 (667)
T ss_pred             CCCCEEEEEec-CHHHHHHHHHHHH-CcCEEE-EEECChH---HHHHH----HcCCeEeCCHHHHHh-----cCCCEEEE
Confidence            45689999996 9999999999876 467877 5565421   11111    345556788888775     25899997


Q ss_pred             ccCchhHHHHHHHHHH--C-CCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHHH
Q 027650          113 FTDASTVYDNVKQATA--F-GMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGS  169 (220)
Q Consensus       113 fT~p~~~~~~~~~al~--~-G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~Gv  169 (220)
                      ++++....+.+.....  . .-.+|+-.+.-...-.+.+++... .+..++ ..|+|....
T Consensus       432 avP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v~~HPm~G~e~  491 (667)
T PLN02712        432 CTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDILCTHPMFGPES  491 (667)
T ss_pred             CCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceEeeCCCCCccc
Confidence            7777766666654432  1 124565554333333445555433 345566 668877553

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=97.60  E-value=0.0003  Score=64.66  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=29.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd~   69 (220)
                      ++||||+|. ||+||.+.|++.+.    +++|+|++-|+
T Consensus         3 ~ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~   40 (361)
T PTZ00434          3 PIKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDM   40 (361)
T ss_pred             ceEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence            479999997 99999999998764    68999999883

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.58  E-value=0.00094  Score=59.05  Aligned_cols=108  Identities=15%  Similarity=0.138  Sum_probs=72.5

Q ss_pred             EEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCchhH
Q 027650           40 INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV  119 (220)
Q Consensus        40 V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~  119 (220)
                      ++|. |.||..+++.+.+. +.++. ++|++.  .....+.    ..|+...+++.+++.      ++|+||-+.++...
T Consensus         1 ~IGl-G~mG~~mA~~L~~~-G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~~~~~------~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKA-GHPVR-VFDLFP--DAVEEAV----AAGAQAAASPAEAAE------GADRVITMLPAGQH   65 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhC-CCeEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCCChHH
Confidence            4685 99999999998764 67765 567642  2233332    245667788888886      79999865554343


Q ss_pred             -HHHH------HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650          120 -YDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus       120 -~~~~------~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                       .+.+      ...+..|. +||-+++.+++..+++.+.+++.|+..+=+|
T Consensus        66 ~~~v~~g~~~l~~~~~~g~-~vid~st~~p~~~~~~~~~~~~~g~~~vdaP  115 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKGS-LLIDCSTIDPDSARKLAELAAAHGAVFMDAP  115 (288)
T ss_pred             HHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCcEEECC
Confidence             3333      12233443 5556778889999999999988888877665

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.53  E-value=0.00074  Score=57.08  Aligned_cols=121  Identities=18%  Similarity=0.285  Sum_probs=73.6

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc----cCCHHHHHhccccCCCccEEEEc
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      |+|+|++|++|+.+++.+.. +++++.+++.+.. ......+-    ..|+.+    ++|.+.+...+   .++|+|+-.
T Consensus         1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~-~~~~~~l~----~~g~~vv~~d~~~~~~l~~al---~g~d~v~~~   71 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPS-SDRAQQLQ----ALGAEVVEADYDDPESLVAAL---KGVDAVFSV   71 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSH-HHHHHHHH----HTTTEEEES-TT-HHHHHHHH---TTCSEEEEE
T ss_pred             CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccc-hhhhhhhh----cccceEeecccCCHHHHHHHH---cCCceEEee
Confidence            78999999999999999988 8999999886421 11122221    123222    33444432211   389999866


Q ss_pred             cC---ch---hHHHHHHHHHHCCCcEEEeCC-C--C------C-H----HHHHHHHHHhhhcCceEE-EcCCCcH
Q 027650          114 TD---AS---TVYDNVKQATAFGMRSVVYVP-H--I------Q-L----ETVSALSAFCDKASMGCL-IAPTLSI  167 (220)
Q Consensus       114 T~---p~---~~~~~~~~al~~G~~vVigTt-G--~------~-~----e~~~~L~~aA~~~~v~vv-iapNfS~  167 (220)
                      +.   +.   .....+.+|.++|+..++=.. +  .      . .    ++...++++.++.+++.. +.|+|=.
T Consensus        72 ~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~~i~~t~i~~g~f~  146 (233)
T PF05368_consen   72 TPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRESGIPYTIIRPGFFM  146 (233)
T ss_dssp             SSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHCTSEBEEEEE-EEH
T ss_pred             cCcchhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhccccceeccccchh
Confidence            65   22   334667889999998887332 1  1      1 0    233567888888778765 4455433

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=97.51  E-value=0.00032  Score=65.70  Aligned_cols=100  Identities=21%  Similarity=0.228  Sum_probs=63.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhhcCCC------CCCcccc--C
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVCDMEQ------PLEIPVM--S   92 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g~l~g~~~------~~gv~v~--~   92 (220)
                      |+||+|+|. ||+||.+.|.+...++++++++-|+..              .|+--+++.-..+      ...+.++  .
T Consensus        85 ~~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~  163 (421)
T PLN02272         85 KTKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKR  163 (421)
T ss_pred             ceEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecC
Confidence            579999996 999999999987778999999887411              1211111100000      0112232  2


Q ss_pred             CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCC-cEEEeCC
Q 027650           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigTt  138 (220)
                      +++++-..   +.++|+|+++|-.....+.+...++.|. .|||-.|
T Consensus       164 dp~~~~w~---~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap  207 (421)
T PLN02272        164 DPAEIPWG---DFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAP  207 (421)
T ss_pred             CcccCccc---ccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCC
Confidence            45554321   1269999988877777888888899985 5565544

>COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.51  E-value=0.00046  Score=61.58  Aligned_cols=113  Identities=16%  Similarity=0.202  Sum_probs=83.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc--EEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA--VVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D--VVI  111 (220)
                      ..+|.|+|.  +-|+....++... |++||+|+...-.  ++..+++   ..+|||.|...|++-+      ++|  +|+
T Consensus         4 pksVvV~Gt--rFGq~Ylaaf~~~~~~~eLaGiLaqGS--eRSRaLA---h~~GVply~~~eelpd------~idiACVv   70 (361)
T COG4693           4 PKSVVVCGT--RFGQFYLAAFAAAPPRFELAGILAQGS--ERSRALA---HRLGVPLYCEVEELPD------DIDIACVV   70 (361)
T ss_pred             CceEEEecc--hHHHHHHHHhccCCCCceeehhhhccc--HHHHHHH---HHhCCccccCHhhCCC------CCCeEEEE
Confidence            348999995  9999998888776 8999999987521  2334555   3789999999999876      555  343


Q ss_pred             Ec-cCc-hhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 027650          112 DF-TDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (220)
Q Consensus       112 Df-T~p-~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvi  161 (220)
                      .- |.. ..-.+.++..+++|++|+.+-|=. ++++.+|.++|++.|....+
T Consensus        71 Vrsai~Gg~Gs~larall~RGi~VlqEHPl~-p~di~~l~rlA~rqG~~y~v  121 (361)
T COG4693          71 VRSAIVGGQGSALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYLV  121 (361)
T ss_pred             EeeeeecCCcHHHHHHHHHcccHHHHhCCCC-HHHHHHHHHHHHHhCcEEEE
Confidence            33 322 233577899999999999987744 56788888888887777665

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.49  E-value=0.0012  Score=55.76  Aligned_cols=33  Identities=30%  Similarity=0.447  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |||+|+||+|+.|+++++.+.. .+.|+++++.+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~-RGHeVTAivRn   33 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALK-RGHEVTAIVRN   33 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHh-CCCeeEEEEeC
Confidence            6999999999999999998875 69999999975

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=97.44  E-value=0.0015  Score=62.44  Aligned_cols=117  Identities=16%  Similarity=0.115  Sum_probs=69.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhhh-----------hcCC-CCCC-ccccCCHHHHHhcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGMV-----------CDME-QPLE-IPVMSDLTMVLGSI  101 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~l-----------~g~~-~~~g-v~v~~dl~~~l~~~  101 (220)
                      +||+|+|+ |.||..++..+... +++|. ++|++... +.+.+.           .+.. ...+ +.+.+|+++++.  
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~-G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~--   79 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLA-GIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVA--   79 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhc--
Confidence            58999997 99999999988764 78775 57753211 011100           0000 0112 566788988875  


Q ss_pred             ccCCCccEEEEccCchhH-H----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          102 SQSKARAVVIDFTDASTV-Y----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~-~----~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                          ++|+||...+++.. .    ..+...+..+.-+.+.|.|++..+   |.+.+.+.+.-++..||
T Consensus        80 ----~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~---l~~~~~~~~r~~~~hP~  140 (495)
T PRK07531         80 ----GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSD---LQEGMTHPERLFVAHPY  140 (495)
T ss_pred             ----CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcceEEEEecC
Confidence                79999976655532 2    223333444554555566888654   45555555566666664

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.43  E-value=0.0011  Score=57.01  Aligned_cols=118  Identities=14%  Similarity=0.183  Sum_probs=74.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCC-CCCCcccc-----CCHHHHHhccc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDME-QPLEIPVM-----SDLTMVLGSIS  102 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~-~~~gv~v~-----~dl~~~l~~~~  102 (220)
                      ..+||+|.|. |++|+.+++.+.+. +..+|++.|.     +. |-|..++.... ...++..+     .+.++++.   
T Consensus        22 ~g~~vaIqGf-GnVG~~~a~~L~~~-G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---   95 (217)
T cd05211          22 EGLTVAVQGL-GNVGWGLAKKLAEE-GGKVLAVSDPDGYIYDP-GITTEELINYAVALGGSARVKVQDYFPGEAILG---   95 (217)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHc-CCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCccccCcccccCccccee---
Confidence            3479999996 99999999998864 8999999995     23 55554443210 11122222     13355554   


Q ss_pred             cCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650          103 QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (220)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS~  167 (220)
                        .++||+|.++..+..  +...+.+.+..+|+|.-  .++++..+.|    +++  .+++.|.+..
T Consensus        96 --~~~DVlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~~L----~~~--Gi~v~Pd~~~  152 (217)
T cd05211          96 --LDVDIFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALRIL----HER--GIVVAPDIVA  152 (217)
T ss_pred             --ccccEEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHHh
Confidence              489999988876644  22334467799999876  3566433333    343  4777777554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.41  E-value=0.0016  Score=57.85  Aligned_cols=111  Identities=13%  Similarity=0.153  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-------cCCHHHHHhccccCCCcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA  108 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D  108 (220)
                      |||.|+|++|.+|+.+++.+.+. +.++.++..+..   ....+.    ..++.+       .+++.+++.      ++|
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~R~~~---~~~~l~----~~~v~~v~~Dl~d~~~l~~al~------g~d   66 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDE-GYQVRCLVRNLR---KASFLK----EWGAELVYGDLSLPETLPPSFK------GVT   66 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEEcChH---HhhhHh----hcCCEEEECCCCCHHHHHHHHC------CCC
Confidence            58999999999999999998864 789888875421   111111    112222       123455554      799


Q ss_pred             EEEEccCch-------------hHHHHHHHHHHCCCc-EE-EeCCC-----CCH--HHHHHHHHHhhhcCceEE
Q 027650          109 VVIDFTDAS-------------TVYDNVKQATAFGMR-SV-VYVPH-----IQL--ETVSALSAFCDKASMGCL  160 (220)
Q Consensus       109 VVIDfT~p~-------------~~~~~~~~al~~G~~-vV-igTtG-----~~~--e~~~~L~~aA~~~~v~vv  160 (220)
                      +||.+....             .....+.+|.++|+. +| +++.|     .++  +...+.+++.++.++++.
T Consensus        67 ~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~~~~~~~~~~~~K~~~e~~l~~~~l~~t  140 (317)
T CHL00194         67 AIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNAEQYPYIPLMKLKSDIEQKLKKSGIPYT  140 (317)
T ss_pred             EEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccccccCCChHHHHHHHHHHHHHHcCCCeE
Confidence            999864321             113345677788864 43 23322     111  223445666677777765

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.38  E-value=0.00083  Score=56.17  Aligned_cols=123  Identities=13%  Similarity=0.161  Sum_probs=67.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CC------cchhhhhcCC-CCCCccccCCHHHHHhcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VG------EDIGMVCDME-QPLEIPVMSDLTMVLGSI  101 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------~g------~d~g~l~g~~-~~~gv~v~~dl~~~l~~~  101 (220)
                      |||+|+|. |++|-.++-.+++ .|++++| +|.+.       .|      ..+.+++... .......++|.++++.  
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~-~G~~V~g-~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~--   75 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAE-KGHQVIG-VDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK--   75 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHH-TTSEEEE-E-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH--
T ss_pred             CEEEEECC-CcchHHHHHHHHh-CCCEEEE-EeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhh--
Confidence            79999996 9999999887765 5899987 45310       01      1112222100 0123456778888775  


Q ss_pred             ccCCCccEEEEccC-c------------hhHHHHHHHHHHCCCcEEEeCC---CCCHHHHHHHHHHhhh--cCceEEEcC
Q 027650          102 SQSKARAVVIDFTD-A------------STVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDK--ASMGCLIAP  163 (220)
Q Consensus       102 ~~~~~~DVVIDfT~-p------------~~~~~~~~~al~~G~~vVigTt---G~~~e~~~~L~~aA~~--~~v~vviap  163 (220)
                          ++|++|.+-+ |            ..+.+.+...++.|.-+|+.+|   |.+++....+.+....  .+..+.++|
T Consensus        76 ----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~P  151 (185)
T PF03721_consen   76 ----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSP  151 (185)
T ss_dssp             ----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE--
T ss_pred             ----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECC
Confidence                6898885532 2            2234455666777888898887   7777655554443322  346788888


Q ss_pred             CCcH
Q 027650          164 TLSI  167 (220)
Q Consensus       164 NfS~  167 (220)
                      -|-.
T Consensus       152 Erl~  155 (185)
T PF03721_consen  152 ERLR  155 (185)
T ss_dssp             ----
T ss_pred             CccC
Confidence            8654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.38  E-value=0.00099  Score=58.45  Aligned_cols=95  Identities=21%  Similarity=0.319  Sum_probs=56.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------CC----cchhhhhc-CCCCCC----ccc-------c
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------VG----EDIGMVCD-MEQPLE----IPV-------M   91 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------~g----~d~g~l~g-~~~~~g----v~v-------~   91 (220)
                      |+++++|- ||||..+++.+.. .+.++|+ +|.+.        .|    ..+.++.. ++.+.-    +|.       .
T Consensus         1 M~iGmiGL-GrMG~n~v~rl~~-~ghdvV~-yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi   77 (300)
T COG1023           1 MQIGMIGL-GRMGANLVRRLLD-GGHDVVG-YDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI   77 (300)
T ss_pred             Ccceeecc-chhhHHHHHHHHh-CCCeEEE-EcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH
Confidence            58999995 9999999999876 4888886 55311        01    00111111 011100    111       1


Q ss_pred             CCHHHHHhccccCCCccEEEEccC--chhHHHHHHHHHHCCCcEE-EeCCC
Q 027650           92 SDLTMVLGSISQSKARAVVIDFTD--ASTVYDNVKQATAFGMRSV-VYVPH  139 (220)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~--p~~~~~~~~~al~~G~~vV-igTtG  139 (220)
                      +++...|      ..-|+|||--+  -.......+.+.++|++.+ +||.|
T Consensus        78 ~~la~~L------~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSG  122 (300)
T COG1023          78 DDLAPLL------SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSG  122 (300)
T ss_pred             HHHHhhc------CCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCC
Confidence            2233333      25689999643  4455666777899999998 78874

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=97.37  E-value=0.00076  Score=59.38  Aligned_cols=93  Identities=13%  Similarity=0.157  Sum_probs=58.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||.|.|+||- |+.+++.+.+. +.++++-+..+.....+....+..-..|..-..++.+.+.+    .++|+|||.|+
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~-g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~----~~i~~VIDAtH   74 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQ-GIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKR----HSIDILVDATH   74 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhC-CCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHh----cCCCEEEEcCC
Confidence            58999999998 99999988764 68888876643311111111000000011112345555653    57999999999


Q ss_pred             chhH--HH-HHHHHHHCCCcEE
Q 027650          116 ASTV--YD-NVKQATAFGMRSV  134 (220)
Q Consensus       116 p~~~--~~-~~~~al~~G~~vV  134 (220)
                      |-+.  -+ ....|.+.|+|.+
T Consensus        75 PfA~~is~~a~~a~~~~~ipyl   96 (256)
T TIGR00715        75 PFAAQITTNATAVCKELGIPYV   96 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCcEE
Confidence            9765  24 4478888999987

This enzyme was found to be a monomer by gel filtration.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.37  E-value=0.0016  Score=61.53  Aligned_cols=118  Identities=17%  Similarity=0.224  Sum_probs=78.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCC--Cccc--------cCCHHHHHh
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL--EIPV--------MSDLTMVLG   99 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~--gv~v--------~~dl~~~l~   99 (220)
                      ..||+|.|. |++|+.+++.+.+ .+.+||++.|+     +..|-|..++.......  .+.-        +.+.++++.
T Consensus       232 g~rVaIqGf-GnVG~~~A~~L~~-~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~  309 (445)
T PRK09414        232 GKRVVVSGS-GNVAIYAIEKAQQ-LGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWS  309 (445)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccc
Confidence            479999997 9999999998876 58999999994     34577776554321110  1111        124455554


Q ss_pred             ccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          100 SISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                           .++||+|-++..+.. .+++....+.+..+|+|-- + ++++-.+.|    +++  .+++.|.|
T Consensus       310 -----~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L----~~r--GI~~vPD~  367 (445)
T PRK09414        310 -----VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVF----LEA--GVLFAPGK  367 (445)
T ss_pred             -----cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHH----HHC--CcEEECch
Confidence                 489999998876655 5777777778999999876 3 455543333    333  45555654

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.35  E-value=0.0042  Score=55.36  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCc--cccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..||+|+|+ |.||..+++.+....- .++ -++|+..  .....+.    ..|+  .+..++++++.      ++|+||
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V-~~~dr~~--~~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVi   71 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEI-VGADRSA--ETRARAR----ELGLGDRVTTSAAEAVK------GADLVI   71 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEE-EEEECCH--HHHHHHH----hCCCCceecCCHHHHhc------CCCEEE
Confidence            368999996 9999999998876532 244 4667632  1111111    1222  23567777764      799999


Q ss_pred             EccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          112 DFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       112 DfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      .++++....+.+...   ++.|. +|+-..+...+..+.+.+... .++.++
T Consensus        72 iavp~~~~~~v~~~l~~~l~~~~-iv~dvgs~k~~~~~~~~~~~~-~~~~~v  121 (307)
T PRK07502         72 LCVPVGASGAVAAEIAPHLKPGA-IVTDVGSVKASVIAAMAPHLP-EGVHFI  121 (307)
T ss_pred             ECCCHHHHHHHHHHHHhhCCCCC-EEEeCccchHHHHHHHHHhCC-CCCeEE
Confidence            777766554444333   34444 444444455554444544332 234444

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.34  E-value=0.0029  Score=59.63  Aligned_cols=111  Identities=17%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+|+|++|.||+.+++.+.+. +.++.+ ++++.  ....++..   ..|+....++++++.      ++|+||.+++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~-G~~V~v-~~r~~--~~~~~~a~---~~gv~~~~~~~e~~~------~aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEK-GFEVIV-TGRDP--KKGKEVAK---ELGVEYANDNIDAAK------DADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHC-CCEEEE-EECCh--HHHHHHHH---HcCCeeccCHHHHhc------cCCEEEEecC
Confidence            58999986799999999998764 667654 45432  11112221   345566678887775      7899997777


Q ss_pred             chhHHHHHHHHHH---CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 027650          116 ASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (220)
Q Consensus       116 p~~~~~~~~~al~---~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvi  161 (220)
                      ++...+.+.....   .|. +|+-.+.......+.+.+.... +..++-
T Consensus        68 ~~~~~~vl~~l~~~l~~~~-iViDvsSvK~~~~~~l~~~~~~-~~~~V~  114 (437)
T PRK08655         68 INVTEDVIKEVAPHVKEGS-LLMDVTSVKERPVEAMEEYAPE-GVEILP  114 (437)
T ss_pred             HHHHHHHHHHHHhhCCCCC-EEEEcccccHHHHHHHHHhcCC-CCEEEE
Confidence            7666655554443   333 4544444444555566655432 344443

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.34  E-value=0.00071  Score=53.62  Aligned_cols=110  Identities=18%  Similarity=0.101  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc----cccCCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI----PVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv----~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      ..||+|+|+ |.||+.+++.+.+.. ..-+.+++++.  ....++..   ..+.    ..+.+.++++.      ++|+|
T Consensus        19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~Dvv   85 (155)
T cd01065          19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTL--EKAKALAE---RFGELGIAIAYLDLEELLA------EADLI   85 (155)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCH--HHHHHHHH---HHhhcccceeecchhhccc------cCCEE
Confidence            468999997 999999999998754 44555666532  11222221   1111    12456666654      79999


Q ss_pred             EEccCchhH----HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          111 IDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       111 IDfT~p~~~----~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      |..+++..+    .......++.|.-++--.+. ....  .+.+.+++.|+.++
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~-~~~~--~l~~~~~~~g~~~v  136 (155)
T cd01065          86 INTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN-PLET--PLLKEARALGAKTI  136 (155)
T ss_pred             EeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC-CCCC--HHHHHHHHCCCcee
Confidence            977776553    11223445666655522221 1111  67777888777544

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.33  E-value=0.0025  Score=59.23  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=67.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cC--------C----C--CCC-ccccCCHHHHHh
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DM--------E----Q--PLE-IPVMSDLTMVLG   99 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~-g~--------~----~--~~g-v~v~~dl~~~l~   99 (220)
                      |||+|+|. |+||..++..+.+ .+.++++ +|++.  ..+..+. |.        .    .  ..| +..++++++++.
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~-~G~~V~~-~d~~~--~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~   75 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLAD-LGHEVTG-VDIDQ--EKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR   75 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHh-cCCeEEE-EECCH--HHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence            48999996 9999999998875 5788765 56421  1111111 00        0    0  012 456678888775


Q ss_pred             ccccCCCccEEEEccC-ch---------hHHHH---HHHHHHCCCcEEEeCC---CCCHHHHHHHHHHh---h-hcCceE
Q 027650          100 SISQSKARAVVIDFTD-AS---------TVYDN---VKQATAFGMRSVVYVP---HIQLETVSALSAFC---D-KASMGC  159 (220)
Q Consensus       100 ~~~~~~~~DVVIDfT~-p~---------~~~~~---~~~al~~G~~vVigTt---G~~~e~~~~L~~aA---~-~~~v~v  159 (220)
                            ++|+||.+.+ |.         .+.+.   +...++.|.-+|..+|   |.+.+-...+.+..   + ....++
T Consensus        76 ------~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v  149 (411)
T TIGR03026        76 ------DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL  149 (411)
T ss_pred             ------hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence                  7998885543 21         12222   2333455665665444   33433322332210   0 112578


Q ss_pred             EEcCCCcHHH
Q 027650          160 LIAPTLSIGS  169 (220)
Q Consensus       160 viapNfS~Gv  169 (220)
                      ..+|.|..--
T Consensus       150 ~~~Pe~~~~G  159 (411)
T TIGR03026       150 AYNPEFLREG  159 (411)
T ss_pred             EECCCcCCCC
Confidence            8888876543

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.30  E-value=0.0022  Score=58.30  Aligned_cols=127  Identities=11%  Similarity=0.082  Sum_probs=69.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE-ecCC------CCcchhhhh-cCCCCCCccccCCHHHHHhccccCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI-DSHS------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v-d~~~------~g~d~g~l~-g~~~~~gv~v~~dl~~~l~~~~~~~  105 (220)
                      .|+||+|+|+ |.||..++..+.+.-.  ++... ++..      .+.....+. +..-+.++.+++|+++++.      
T Consensus         6 ~~mkI~IiGa-Ga~G~alA~~La~~g~--v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~------   76 (341)
T PRK12439          6 REPKVVVLGG-GSWGTTVASICARRGP--TLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAAN------   76 (341)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHh------
Confidence            4689999997 9999999998876532  22222 2110      011100011 1100123456788888775      


Q ss_pred             CccEEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHH----HHHHHHhhhcCceEEEcCCCcHHH
Q 027650          106 ARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETV----SALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~----~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      ++|+||-++++..+.+.++..   +..+.++|+-+-|+..+..    +.|++........++.-|||.--+
T Consensus        77 ~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev  147 (341)
T PRK12439         77 CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREV  147 (341)
T ss_pred             cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHH
Confidence            789988666665555544443   3445556655558864322    223332212224456669887744

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.29  E-value=0.002  Score=52.01  Aligned_cols=81  Identities=21%  Similarity=0.286  Sum_probs=51.2

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc----cCCH---HHHHhccccCCCccEE
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDL---TMVLGSISQSKARAVV  110 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~~dl---~~~l~~~~~~~~~DVV  110 (220)
                      |+|.|++|.+|+.+++.+.+. +.++.+++.+..   ...+.      .++.+    ..|.   .+++.      ++|+|
T Consensus         1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~---~~~~~------~~~~~~~~d~~d~~~~~~al~------~~d~v   64 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS---KAEDS------PGVEIIQGDLFDPDSVKAALK------GADAV   64 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG---GHHHC------TTEEEEESCTTCHHHHHHHHT------TSSEE
T ss_pred             eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch---hcccc------cccccceeeehhhhhhhhhhh------hcchh
Confidence            789999999999999999886 499999886531   11111      11111    2344   44453      89999


Q ss_pred             EEccCc-----hhHHHHHHHHHHCCCcEE
Q 027650          111 IDFTDA-----STVYDNVKQATAFGMRSV  134 (220)
Q Consensus       111 IDfT~p-----~~~~~~~~~al~~G~~vV  134 (220)
                      |++..+     +.....+..+.++|++-+
T Consensus        65 i~~~~~~~~~~~~~~~~~~a~~~~~~~~~   93 (183)
T PF13460_consen   65 IHAAGPPPKDVDAAKNIIEAAKKAGVKRV   93 (183)
T ss_dssp             EECCHSTTTHHHHHHHHHHHHHHTTSSEE
T ss_pred             hhhhhhhcccccccccccccccccccccc
Confidence            976542     222344455667786544

...

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.28  E-value=0.004  Score=59.38  Aligned_cols=124  Identities=11%  Similarity=0.057  Sum_probs=71.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecC-------------CCCcchhhhhcCCCCCCccccCCHHHHHhc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSH-------------SVGEDIGMVCDMEQPLEIPVMSDLTMVLGS  100 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~-------------~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~  100 (220)
                      ||||+|+|+ |++|-.++-.+.+. .+++++++ |.+             .......++...........++|+++++. 
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gv-D~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~-   77 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVV-DISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVA-   77 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEE-ECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHh-
Confidence            689999996 99999999888765 36888875 521             01112223321000012456777877765 


Q ss_pred             cccCCCccEEEEcc-Cch--------------hH---HHHHHHHHHCCCcEEEeCC---CCCHHHHHHHHHHhhhcCceE
Q 027650          101 ISQSKARAVVIDFT-DAS--------------TV---YDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGC  159 (220)
Q Consensus       101 ~~~~~~~DVVIDfT-~p~--------------~~---~~~~~~al~~G~~vVigTt---G~~~e~~~~L~~aA~~~~v~v  159 (220)
                           ++|++|.+- +|.              .+   .+.+...++.|.-||+.+|   |.+++-...|.+........+
T Consensus        78 -----~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v  152 (473)
T PLN02353         78 -----EADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQI  152 (473)
T ss_pred             -----cCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEE
Confidence                 799887652 222              11   1223333456777888877   666655555554322123457


Q ss_pred             EEcCCCc
Q 027650          160 LIAPTLS  166 (220)
Q Consensus       160 viapNfS  166 (220)
                      .++|-|-
T Consensus       153 ~~~PErl  159 (473)
T PLN02353        153 LSNPEFL  159 (473)
T ss_pred             EECCCcc
Confidence            7777764

>PLN02522 ATP citrate (pro-S)-lyase

Probab=97.27  E-value=0.0014  Score=64.23  Aligned_cols=125  Identities=15%  Similarity=0.201  Sum_probs=80.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHH-----HhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650           35 NIKVIINGAVKEIGRAAVIAV-----TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i-----~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      ..|-.++|- +.  +.+-+.+     ...+.-.+++.+-+.. +.-..-+.|. ...++|||++.+|+.++   ..++|+
T Consensus        10 ~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~-~~~~iPVf~tv~eA~~~---~~~~~~   81 (608)
T PLN02522         10 TTQALFYNY-KQ--LPVQRMLDFDFLCGRETPSVAGIINPGS-EGFQKLFFGQ-EEIAIPVHGSIEAACKA---HPTADV   81 (608)
T ss_pred             CceeEEEcC-cH--HHHHhhhccceeccCCCCeeEEEEcCCC-CcceeEecCC-EeeCccccchHHHHHHh---CCCCcE
Confidence            346778874 21  2222222     2233345666665532 2111112343 25689999999999974   126899


Q ss_pred             EEEccCchhHHHHH-HHHHHCCCcEEEe-CCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          110 VIDFTDASTVYDNV-KQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       110 VIDfT~p~~~~~~~-~~al~~G~~vVig-TtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      .|.|.+|..+++.+ +.|.+.|++.++- |.|+.+.+..+|.++++++|+. ++-|| ++|+
T Consensus        82 ~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r-lIGPN-c~Gi  141 (608)
T PLN02522         82 FINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV-VIGPA-TVGG  141 (608)
T ss_pred             EEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE-EECCC-CCee
Confidence            99999988887655 5555569876554 5599888889999999998887 45577 5555

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.26  E-value=0.00039  Score=62.80  Aligned_cols=91  Identities=12%  Similarity=0.104  Sum_probs=63.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCC--ccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -+|+|+|+ |.+|+.+++.+....+++-+.++++..  ..+.++.. +...++  +..++++++++.      ++|+||-
T Consensus       128 ~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~--~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------~aDiVi~  198 (325)
T PRK08618        128 KTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTF--EKAYAFAQEIQSKFNTEIYVVNSADEAIE------EADIIVT  198 (325)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence            48999997 999999999887778899999998742  12222221 001223  345789999885      7999995


Q ss_pred             ccCchhHHHHHHHHHHCCCcEE-EeC
Q 027650          113 FTDASTVYDNVKQATAFGMRSV-VYV  137 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV-igT  137 (220)
                      +| |..+.-.- .+++.|.||. ||+
T Consensus       199 aT-~s~~p~i~-~~l~~G~hV~~iGs  222 (325)
T PRK08618        199 VT-NAKTPVFS-EKLKKGVHINAVGS  222 (325)
T ss_pred             cc-CCCCcchH-HhcCCCcEEEecCC
Confidence            55 44444444 7889999985 554

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.24  E-value=0.0054  Score=58.78  Aligned_cols=119  Identities=10%  Similarity=0.071  Sum_probs=71.5

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---ccccCCHHHHHhccccCCCccE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g---v~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      ..+.+|+++|. |.||+.+++.+..+ +++|+ ++|++.  ....++.......|   +..+.+++++...+   ..+|+
T Consensus         4 ~~~~~IG~IGL-G~MG~~mA~nL~~~-G~~V~-V~NRt~--~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l---~~~dv   75 (493)
T PLN02350          4 AALSRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTT--SKVDETVERAKKEGNLPLYGFKDPEDFVLSI---QKPRS   75 (493)
T ss_pred             CCCCCEEEEee-HHHHHHHHHHHHhC-CCeEE-EECCCH--HHHHHHHHhhhhcCCcccccCCCHHHHHhcC---CCCCE
Confidence            45678999995 99999999999864 88776 677642  12223321000112   23577899887621   25998


Q ss_pred             EEEcc-CchhHHHH---HHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          110 VIDFT-DASTVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       110 VIDfT-~p~~~~~~---~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      ||-+= .++.+.+.   +...++.|.-+|-++| .++++..++.+.+++.|+..+
T Consensus        76 Ii~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT-~~~~~t~~~~~~l~~~Gi~fl  129 (493)
T PLN02350         76 VIILVKAGAPVDQTIKALSEYMEPGDCIIDGGN-EWYENTERRIKEAAEKGLLYL  129 (493)
T ss_pred             EEEECCCcHHHHHHHHHHHhhcCCCCEEEECCC-CCHHHHHHHHHHHHHcCCeEE
Confidence            88432 23333333   3444566754554444 445556677777777777755

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.23  E-value=0.0056  Score=58.33  Aligned_cols=117  Identities=13%  Similarity=0.142  Sum_probs=71.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      |.+|+|+|. |.||..+++.+... +++|. ++|++.  ....++.......|  +..+.+++++...+   .++|+||-
T Consensus         1 ~~~IgvIGL-G~MG~~lA~nL~~~-G~~V~-v~dr~~--~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l---~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIGL-AVMGQNLALNIASR-GFKIS-VYNRTY--EKTEEFVKKAKEGNTRVKGYHTLEELVNSL---KKPRKVIL   72 (470)
T ss_pred             CCEEEEEeE-hHHHHHHHHHHHHC-CCeEE-EEeCCH--HHHHHHHHhhhhcCCcceecCCHHHHHhcC---CCCCEEEE
Confidence            568999996 99999999999864 77755 577642  11222221100113  34578999988621   25897776


Q ss_pred             ccC-chhHHHH---HHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          113 FTD-ASTVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       113 fT~-p~~~~~~---~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      +-+ ++.+.+.   +...++.|.-+|-++++...+..++..+ .++.|+..+
T Consensus        73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~-l~~~Gi~fl  123 (470)
T PTZ00142         73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR-CEEKGILYL  123 (470)
T ss_pred             EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH-HHHcCCeEE
Confidence            634 3344333   3445677877887777776555555444 445566544

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=97.22  E-value=0.0027  Score=57.46  Aligned_cols=113  Identities=11%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .||+|+|+ |+||+.+++.+... +++++...++..  .....+.    ..|+.+. +.++++.      ++|+|+-..+
T Consensus         4 kkIgiIG~-G~mG~AiA~~L~~s-G~~Viv~~~~~~--~~~~~a~----~~Gv~~~-s~~ea~~------~ADiVvLaVp   68 (314)
T TIGR00465         4 KTVAIIGY-GSQGHAQALNLRDS-GLNVIVGLRKGG--ASWKKAT----EDGFKVG-TVEEAIP------QADLIMNLLP   68 (314)
T ss_pred             CEEEEEeE-cHHHHHHHHHHHHC-CCeEEEEECcCh--hhHHHHH----HCCCEEC-CHHHHHh------cCCEEEEeCC
Confidence            58999997 99999999999864 677655554421  2222221    2355544 5777765      7999997777


Q ss_pred             chhHHHHH----HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHH
Q 027650          116 ASTVYDNV----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIG  168 (220)
Q Consensus       116 p~~~~~~~----~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~G  168 (220)
                      |+.....+    ...++.|. +|+=..|++-+..+   ..-. .+++|+ +.||...-
T Consensus        69 p~~~~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~---~~~~-~~~~VvrvmPn~p~~  121 (314)
T TIGR00465        69 DEVQHEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQ---IVPP-KDVDVVMVAPKGPGT  121 (314)
T ss_pred             cHhHHHHHHHHHHhhCCCCc-EEEEeCCccHhhcc---ccCC-CCCcEEEECCCCCcH
Confidence            77343322    22334453 55556688865533   2221 235565 66885543

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=97.22  E-value=0.0013  Score=59.96  Aligned_cols=97  Identities=25%  Similarity=0.204  Sum_probs=61.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhhcCCC------CC-Ccccc--C
Q 027650           37 KVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVCDMEQ------PL-EIPVM--S   92 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~l~g~~~------~~-gv~v~--~   92 (220)
                      ||+|+|. ||+||.+.|++.+.  +++++|++-|..             -.|+--+++.-.+.      .. .+.++  .
T Consensus         1 ~i~INGf-GRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~   79 (327)
T TIGR01534         1 KVGINGF-GRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER   79 (327)
T ss_pred             CEEEEcc-ChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence            7999996 99999999998876  589999998730             01221111100000      01 12222  2


Q ss_pred             CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                      +++++--   ++.++|+|+++|-.....+.+...++.|...|+=+
T Consensus        80 dp~~~~w---~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iS  121 (327)
T TIGR01534        80 DPSDLPW---KALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLIS  121 (327)
T ss_pred             CcccCch---hhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeC
Confidence            4444432   11279999988888888888999999997766543

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=97.20  E-value=0.00084  Score=60.43  Aligned_cols=85  Identities=21%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             EecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc------CchhHHHHHHHHHHCCCcEEEeCCCC
Q 027650           67 IDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHI  140 (220)
Q Consensus        67 vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~~~~~al~~G~~vVigTtG~  140 (220)
                      +|++..|++++++.+.  ..|+|++++++++ .     .++|++|.-.      .|+.+.+.+..|+++|++||.|---+
T Consensus         1 ID~~~aG~~a~e~~~~--~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~   72 (301)
T PF07755_consen    1 IDSRLAGKDAGEVLGG--KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHDF   72 (301)
T ss_dssp             E-TTTTTSBHHHCCSS--SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS-
T ss_pred             CCcccCCCcHHHhcCC--CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChhh
Confidence            5777889999999985  3899999999999 3     4899888532      37788899999999999999975532


Q ss_pred             CHHHHHHHHHHhhhcCceEE
Q 027650          141 QLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       141 ~~e~~~~L~~aA~~~~v~vv  160 (220)
                       ..+..+|.++|+++|+.++
T Consensus        73 -L~ddpel~~~A~~~g~~i~   91 (301)
T PF07755_consen   73 -LSDDPELAAAAKKNGVRII   91 (301)
T ss_dssp             -HCCHHHHHCCHHCCT--EE
T ss_pred             -hccCHHHHHHHHHcCCeEe
Confidence             3344789999999999888

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.17  E-value=0.0044  Score=54.56  Aligned_cols=99  Identities=17%  Similarity=0.136  Sum_probs=57.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc-c-ccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-P-VMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~-v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      |||+|+|+ |.||..+++.+.+. +.++. ++|++.  .....+..    .|+ . ..++.+ .+.      ++|+||.+
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~-g~~V~-~~d~~~--~~~~~a~~----~g~~~~~~~~~~-~~~------~aDlVila   64 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSL-GHTVY-GVSRRE--STCERAIE----RGLVDEASTDLS-LLK------DCDLVILA   64 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHC-CCEEE-EEECCH--HHHHHHHH----CCCcccccCCHh-Hhc------CCCEEEEc
Confidence            48999996 99999999998765 67765 456531  11222221    121 1 233443 443      79999977


Q ss_pred             cCchhHHHHHHHHHHC--CCcEEEeCCCCCHHHHHHHHH
Q 027650          114 TDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSA  150 (220)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTtG~~~e~~~~L~~  150 (220)
                      +++....+.+......  .-.+|+-+.+...+..+.+.+
T Consensus        65 vp~~~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~  103 (279)
T PRK07417         65 LPIGLLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEK  103 (279)
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHH
Confidence            7777766655544432  223554444555555444443

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=97.17  E-value=0.0062  Score=54.90  Aligned_cols=134  Identities=19%  Similarity=0.176  Sum_probs=85.9

Q ss_pred             ccccccCCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCH
Q 027650           15 ISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDL   94 (220)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl   94 (220)
                      .++++...+.+..+..-+.++.||+-+|- |.||+.++..+... ++.|. ++|+..  ....++.    ..|..+.+++
T Consensus        15 ~~~~~~~~~~~~~s~~~~~s~~~iGFIGL-G~MG~~M~~nLik~-G~kVt-V~dr~~--~k~~~f~----~~Ga~v~~sP   85 (327)
T KOG0409|consen   15 FSRRLVKASETAMSSRITPSKTRIGFIGL-GNMGSAMVSNLIKA-GYKVT-VYDRTK--DKCKEFQ----EAGARVANSP   85 (327)
T ss_pred             hcccccccccccccccCCcccceeeEEee-ccchHHHHHHHHHc-CCEEE-EEeCcH--HHHHHHH----HhchhhhCCH
Confidence            34555554444434333446789999995 99999999999875 77776 577642  1112222    3477889999


Q ss_pred             HHHHhccccCCCccEEEEc-cCchhHHHHHH------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650           95 TMVLGSISQSKARAVVIDF-TDASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDf-T~p~~~~~~~~------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                      .|+.+      ..||||-. +.|..+.+.+.      ..++.|....|--+..+++...+|.+.++..+-..+=+|
T Consensus        86 aeVae------~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAP  155 (327)
T KOG0409|consen   86 AEVAE------DSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAP  155 (327)
T ss_pred             HHHHh------hcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEecc
Confidence            99986      79988843 34444444332      223355555445556788888889888877666655433

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.15  E-value=0.0015  Score=58.35  Aligned_cols=109  Identities=17%  Similarity=0.196  Sum_probs=65.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc--ccCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ...||+|+|+ |+||+.+++.+... ++++. ++++..  .+.....    ..+..  -++++++.+.      ++|+||
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~-G~~V~-v~~R~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDiVi  214 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSAL-GARVF-VGARSS--ADLARIT----EMGLIPFPLNKLEEKVA------EIDIVI  214 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HCCCeeecHHHHHHHhc------cCCEEE
Confidence            3458999997 99999999999865 67765 556532  1222111    11222  1456677775      799999


Q ss_pred             EccCchhHH-HHHHHHHHCCCcEE-Ee-CCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          112 DFTDASTVY-DNVKQATAFGMRSV-VY-VPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       112 DfT~p~~~~-~~~~~al~~G~~vV-ig-TtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      . +.|.... +.....++.+.-+| ++ .||-++     + ++|++.|+..+++||
T Consensus       215 n-t~P~~ii~~~~l~~~k~~aliIDlas~Pg~td-----f-~~Ak~~G~~a~~~~g  263 (287)
T TIGR02853       215 N-TIPALVLTADVLSKLPKHAVIIDLASKPGGTD-----F-EYAKKRGIKALLAPG  263 (287)
T ss_pred             E-CCChHHhCHHHHhcCCCCeEEEEeCcCCCCCC-----H-HHHHHCCCEEEEeCC
Confidence            6 4454432 22333344443333 22 245554     4 678899999998886

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.09  E-value=0.0083  Score=53.75  Aligned_cols=114  Identities=20%  Similarity=0.186  Sum_probs=76.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      +||+.+|. |.||.-+++.+... ++++. ++|++.  ..+.+++   ...|.....++.++..      .+|+||-+=+
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~a-G~~v~-v~~r~~--~ka~~~~---~~~Ga~~a~s~~eaa~------~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKA-GHEVT-VYNRTP--EKAAELL---AAAGATVAASPAEAAA------EADVVITMLP   66 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHC-CCEEE-EEeCCh--hhhhHHH---HHcCCcccCCHHHHHH------hCCEEEEecC
Confidence            48999995 99999999999874 77776 566642  1112222   1347777888877775      7999985433


Q ss_pred             chhHHHHHHH----HHH---CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          116 ASTVYDNVKQ----ATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       116 p~~~~~~~~~----al~---~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      .....+.+.+    .++   .|.-+|- -+..+++...++.+.+++.|...+=+|=
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~ID-mSTisp~~a~~~a~~~~~~G~~~lDAPV  121 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVID-MSTISPETARELAAALAAKGLEFLDAPV  121 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHhcCCcEEecCc
Confidence            3333333332    232   4555554 4557788899999999999988886553

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.05  E-value=0.012  Score=51.69  Aligned_cols=85  Identities=12%  Similarity=0.112  Sum_probs=51.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      |||+|+|+ |.||..+++.+.+.. ..++.+ +|++.  .......    ..|+. ...+++++.       ++|+||.+
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~-~d~~~--~~~~~~~----~~g~~~~~~~~~~~~-------~aD~Vila   65 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYG-YDHNE--LHLKKAL----ELGLVDEIVSFEELK-------KCDVIFLA   65 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEE-EcCCH--HHHHHHH----HCCCCcccCCHHHHh-------cCCEEEEe
Confidence            48999996 999999999987652 135544 56532  1112111    22322 244666643       58999978


Q ss_pred             cCchhHHHHHHHHHH--CCCcEEEe
Q 027650          114 TDASTVYDNVKQATA--FGMRSVVY  136 (220)
Q Consensus       114 T~p~~~~~~~~~al~--~G~~vVig  136 (220)
                      ++|....+.+.....  .+. +|+-
T Consensus        66 vp~~~~~~~~~~l~~l~~~~-iv~d   89 (275)
T PRK08507         66 IPVDAIIEILPKLLDIKENT-TIID   89 (275)
T ss_pred             CcHHHHHHHHHHHhccCCCC-EEEE
Confidence            888777776655433  343 5554

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.0026  Score=57.67  Aligned_cols=106  Identities=14%  Similarity=0.182  Sum_probs=78.9

Q ss_pred             HHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc------CchhHHH
Q 027650           48 GRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYD  121 (220)
Q Consensus        48 G~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT------~p~~~~~  121 (220)
                      |+...-++...+.+++++++|+...|.+.....+. ...++|+.++.+++++.     ..|++|.-.      .++.+.+
T Consensus        15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~-~~~~vpii~s~~~~~e~-----~~e~liIgia~~gG~~~~~~~~   88 (339)
T COG3367          15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGG-DKADVPIISSVEEALEG-----LAEALIIGIAPPGGVLPESWRE   88 (339)
T ss_pred             chhhhhhhcccccceeeeEEeeeccccccHHHhCC-ccCCCcccccHHHHHhc-----CcceEEEEeecCCCcCcHHHHH
Confidence            55555555555569999999987767444433332 36799999999999973     458777653      3567778


Q ss_pred             HHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          122 NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       122 ~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      .+..|+++|++||.|---+ -++...+.++|++.|+.+.
T Consensus        89 ~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~rl~  126 (339)
T COG3367          89 YIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGVRLD  126 (339)
T ss_pred             HHHHHHHhCchhhhhhHHH-hhcChHHHHHHHHcCCeeE
Confidence            9999999999999876555 5667889999999888555

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.02  E-value=0.0094  Score=52.51  Aligned_cols=119  Identities=16%  Similarity=0.153  Sum_probs=76.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCCCCC------------CccccCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQPL------------EIPVMSD   93 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l---~g~~~~~------------gv~v~~d   93 (220)
                      ...||+|.|. |++|+..++.+.+ .+..+|++.|+     +..|-|..++   .......            +.. +-+
T Consensus        37 ~g~~vaIqGf-GnVG~~~a~~L~e-~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~  113 (254)
T cd05313          37 KGKRVAISGS-GNVAQYAAEKLLE-LGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFE  113 (254)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeC
Confidence            3469999996 9999999998876 58999999994     3456665544   1110000            111 225


Q ss_pred             HHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650           94 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      .++++.     .++||+|=+..-... .+++....+.+..+|+|-- + ++++-.+.|    +++  .+++.|.|.
T Consensus       114 ~~~~~~-----~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L----~~r--GI~vvPD~l  178 (254)
T cd05313         114 GKKPWE-----VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVF----RQA--GVLFAPGKA  178 (254)
T ss_pred             Ccchhc-----CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHH----HHC--CcEEECchh
Confidence            566665     489999977655444 6777777788999999876 3 455332222    343  455556543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=96.98  E-value=0.0025  Score=56.36  Aligned_cols=79  Identities=22%  Similarity=0.340  Sum_probs=49.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc-
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT-  114 (220)
                      |||.|+|++|.+|+.+.+.+.+ .+.++++. ++..              .++.-.+.+.+.+..    .+||+||.+. 
T Consensus         1 MriLI~GasG~lG~~l~~~l~~-~~~~v~~~-~r~~--------------~dl~d~~~~~~~~~~----~~pd~Vin~aa   60 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKE-RGYEVIAT-SRSD--------------LDLTDPEAVAKLLEA----FKPDVVINCAA   60 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTT-TSEEEEEE-STTC--------------S-TTSHHHHHHHHHH----H--SEEEE---
T ss_pred             CEEEEECCCCHHHHHHHHHHhh-CCCEEEEe-Cchh--------------cCCCCHHHHHHHHHH----hCCCeEeccce
Confidence            7999999999999999998876 67888876 3321              111112234455543    3799999874 


Q ss_pred             ---------Cchh--------HHHHHHHHHHCCCcEE
Q 027650          115 ---------DAST--------VYDNVKQATAFGMRSV  134 (220)
Q Consensus       115 ---------~p~~--------~~~~~~~al~~G~~vV  134 (220)
                               .|+.        ....++.|.+.|.++|
T Consensus        61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li   97 (286)
T PF04321_consen   61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLI   97 (286)
T ss_dssp             ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEE
T ss_pred             eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEE
Confidence                     2222        2234577788999987

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=96.97  E-value=0.0059  Score=54.69  Aligned_cols=33  Identities=27%  Similarity=0.209  Sum_probs=29.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |+||.|.|++|.+|+.+++.+.+..+.+++++.
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~   33 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMD   33 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEe
Confidence            679999999999999999999876678988864

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.94  E-value=0.016  Score=53.65  Aligned_cols=71  Identities=20%  Similarity=0.101  Sum_probs=47.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...||+|+|.+|.||+.+++.+.+..+.++.| +|+...                 ...++++++.      ++|+||-+
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~~d~-----------------~~~~~~~~v~------~aDlVila   58 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDPADP-----------------GSLDPATLLQ------RADVLIFS   58 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcCCcc-----------------ccCCHHHHhc------CCCEEEEe
Confidence            45799999977999999999998655788775 565210                 0224445543      57777766


Q ss_pred             cCchhHHHHHHHHHH
Q 027650          114 TDASTVYDNVKQATA  128 (220)
Q Consensus       114 T~p~~~~~~~~~al~  128 (220)
                      +++....+.+.....
T Consensus        59 vPv~~~~~~l~~l~~   73 (370)
T PRK08818         59 APIRHTAALIEEYVA   73 (370)
T ss_pred             CCHHHHHHHHHHHhh
Confidence            666666666655443

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.93  E-value=0.0032  Score=55.97  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=26.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +.||+|+|+ |.||..++..+.. .+++++. +|+
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~-~g~~V~~-~d~   35 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFAR-KGLQVVL-IDV   35 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHh-CCCeEEE-EEC
Confidence            468999997 9999999998876 4778765 564

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.93  E-value=0.011  Score=56.29  Aligned_cols=115  Identities=10%  Similarity=0.033  Sum_probs=67.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      +|+++|. |.||+.+++.+... +++|+ ++|++.  ....++... ....++..+.+++++...+   .++|+||-+-+
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~-G~~V~-v~drt~--~~~~~l~~~~~~g~~~~~~~s~~e~v~~l---~~~dvIil~v~   72 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADH-GFTVS-VYNRTP--EKTDEFLAEHAKGKKIVGAYSIEEFVQSL---ERPRKIMLMVK   72 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhc-CCeEE-EEeCCH--HHHHHHHhhccCCCCceecCCHHHHHhhc---CCCCEEEEECC
Confidence            4899996 99999999999875 77765 567532  222333211 0001245577888776421   36898885555


Q ss_pred             c-hhHHHH---HHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          116 A-STVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       116 p-~~~~~~---~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      + ..+.+.   +...++.|.-+|-++|....+..++.++ .++.|+..+
T Consensus        73 ~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~-l~~~gi~fv  120 (467)
T TIGR00873        73 AGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE-LKAKGILFV  120 (467)
T ss_pred             CcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH-HHhcCCEEE
Confidence            5 233333   3344556766666666655555455444 455567654

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase

Probab=96.92  E-value=0.013  Score=55.61  Aligned_cols=119  Identities=10%  Similarity=0.096  Sum_probs=68.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhc-----------C-------------CC-CCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCD-----------M-------------EQ-PLE   87 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g-----------~-------------~~-~~g   87 (220)
                      .+.||+|.|+||-+|+..++.+.++|+ ++++++.....    ...+..           +             .. ..+
T Consensus        56 ~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~N----i~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~  131 (454)
T PLN02696         56 GPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSN----VTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDK  131 (454)
T ss_pred             CccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCC----HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCC
Confidence            357999999999999999999988766 99999876321    111110           0             00 001


Q ss_pred             cccc---CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650           88 IPVM---SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus        88 v~v~---~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      ..++   +.+.++...    .++|+||..-.--+-..-...|+++|+.|....-..=-.--+.|.++++++|+.++
T Consensus       132 ~~vl~G~egl~~la~~----~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~Il  203 (454)
T PLN02696        132 PEIIPGEEGIVEVARH----PEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKIL  203 (454)
T ss_pred             cEEEECHHHHHHHHcC----CCCCEEEEeCccccchHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEe
Confidence            2222   345555543    46898885433333344557889999998864321000011234555555554444

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.91  E-value=0.013  Score=53.32  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=26.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..||+|+|+ |-||+.++..+.. .+++++ ++|+
T Consensus         7 i~~VaVIGa-G~MG~giA~~~a~-aG~~V~-l~D~   38 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARALA-HGLDVV-AWDP   38 (321)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEeC
Confidence            358999997 9999999998876 488887 4665

>PLN02858 fructose-bisphosphate aldolase

Probab=96.91  E-value=0.013  Score=62.45  Aligned_cols=114  Identities=13%  Similarity=0.051  Sum_probs=75.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .+.||+++|. |+||..+++.+.. .++++. ++|+..  .....+.    ..|+...+++.++..      ++|+||-+
T Consensus       323 ~~~~IGfIGl-G~MG~~mA~~L~~-~G~~V~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~~~------~aDvVi~~  387 (1378)
T PLN02858        323 PVKRIGFIGL-GAMGFGMASHLLK-SNFSVC-GYDVYK--PTLVRFE----NAGGLAGNSPAEVAK------DVDVLVIM  387 (1378)
T ss_pred             CCCeEEEECc-hHHHHHHHHHHHH-CCCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEe
Confidence            3579999996 9999999999876 478775 567532  2223333    234555778888875      79998854


Q ss_pred             cC-chhHHHHH------HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhh--cCceEEEcC
Q 027650          114 TD-ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDK--ASMGCLIAP  163 (220)
Q Consensus       114 T~-p~~~~~~~------~~al~~G~~vVigTtG~~~e~~~~L~~aA~~--~~v~vviap  163 (220)
                      -+ |..+.+.+      ...++.|. +||-.+..+++..+++.+.+++  .|+.++=+|
T Consensus       388 V~~~~~v~~Vl~g~~g~~~~l~~g~-ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP  445 (1378)
T PLN02858        388 VANEVQAENVLFGDLGAVSALPAGA-SIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP  445 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCCC-EEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc
Confidence            33 44444443      12234454 4455666678888888888777  788877666

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.88  E-value=0.0064  Score=52.35  Aligned_cols=98  Identities=24%  Similarity=0.289  Sum_probs=65.0

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhc-CCcEEE--EEEecCCCCcchhhhhcCCCCCCcccc-CCHHHHHhccccCCCcc
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVA--GAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARA  108 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLv--g~vd~~~~g~d~g~l~g~~~~~gv~v~-~dl~~~l~~~~~~~~~D  108 (220)
                      +++.||+|+| +|++|.-+.--++.+ ..+|.-  -.+|+...|-  ...+    ++|++.+ +-++-+|... ...+.|
T Consensus         2 ~sk~kvaiig-sgni~tdlm~k~lr~g~~le~~~mvgidp~sdgl--araa----rlgv~tt~egv~~ll~~p-~~~di~   73 (310)
T COG4569           2 SSKRKVAIIG-SGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGL--ARAA----RLGVATTHEGVIGLLNMP-EFADID   73 (310)
T ss_pred             CCcceEEEEc-cCcccHHHHHHHHhcCCcccceeEEccCCCccHH--HHHH----hcCCcchhhHHHHHHhCC-CCCCcc
Confidence            5678999999 599998876555544 444443  3456644332  1111    4555543 2344444321 113566


Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      .|+|.|..-.+.+++..+.+.|++.+-=||
T Consensus        74 lvfdatsa~~h~~~a~~~ae~gi~~idltp  103 (310)
T COG4569          74 LVFDATSAGAHVKNAAALAEAGIRLIDLTP  103 (310)
T ss_pred             eEEeccccchhhcchHhHHhcCCceeecch
Confidence            999999999999999999999999997676

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.87  E-value=0.0076  Score=52.97  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=26.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +.||+|+|+ |.||..++..+... +.+++. +|+
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~-g~~V~~-~d~   34 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVVM-VDI   34 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHC-CCceEE-EeC
Confidence            458999997 99999999988765 777775 564

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.84  E-value=0.015  Score=45.87  Aligned_cols=120  Identities=15%  Similarity=0.168  Sum_probs=62.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ||.|+|+ |++|..+++.+.. .++.=+.++|++.. -.++... ....+..|-+-.+.+.+.+.+    -.+++-|..-
T Consensus         1 ~VliiG~-GglGs~ia~~L~~-~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~----~~p~v~i~~~   74 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLAR-SGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNE----LNPGVNVTAV   74 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-CCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHH----HCCCcEEEEE
Confidence            6899998 9999999999876 47765667886421 1122111 100001122222222333332    2445444221


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      ......+.. ...-.+..+|+.++.- .+....|.++|++.++|++.+.+
T Consensus        75 ~~~~~~~~~-~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~  122 (143)
T cd01483          75 PEGISEDNL-DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGG  122 (143)
T ss_pred             eeecChhhH-HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcC
Confidence            111111111 2222466777766544 45567788888888888876544

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.84  E-value=0.0042  Score=55.56  Aligned_cols=115  Identities=15%  Similarity=0.190  Sum_probs=69.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc--cCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ...||+|+|+ |++|+.+++.+... +.++.. +++..  .......    ..|...  ++++.+.+.      ++|+||
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~-Ga~V~v-~~r~~--~~~~~~~----~~G~~~~~~~~l~~~l~------~aDiVI  215 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKAL-GANVTV-GARKS--AHLARIT----EMGLSPFHLSELAEEVG------KIDIIF  215 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHC-CCEEEE-EECCH--HHHHHHH----HcCCeeecHHHHHHHhC------CCCEEE
Confidence            3469999997 99999999998765 676654 55531  1111111    223222  346667664      799999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEE-EeC-CCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          112 DFTDASTVYDNVKQATAFGMRSV-VYV-PHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vV-igT-tG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      ..+++....+.....++.|.-+| ++. +|-++     + +.+++.|++.++.+|.--++
T Consensus       216 ~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd-----~-~~a~~~Gv~~~~~~~lpg~v  269 (296)
T PRK08306        216 NTIPALVLTKEVLSKMPPEALIIDLASKPGGTD-----F-EYAEKRGIKALLAPGLPGKV  269 (296)
T ss_pred             ECCChhhhhHHHHHcCCCCcEEEEEccCCCCcC-----e-eehhhCCeEEEEECCCCccC
Confidence            76554433333333455554444 333 34433     2 36788999999988866544

>PLN02858 fructose-bisphosphate aldolase

Probab=96.84  E-value=0.018  Score=61.50  Aligned_cols=114  Identities=13%  Similarity=0.058  Sum_probs=75.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -.||+++|. |.||..+++.+.. .+++|. ++|+..  .....+.    ..|+.+.+++.++..      ++|+||-+-
T Consensus         4 ~~~IGfIGL-G~MG~~mA~~L~~-~G~~v~-v~dr~~--~~~~~l~----~~Ga~~~~s~~e~a~------~advVi~~l   68 (1378)
T PLN02858          4 AGVVGFVGL-DSLSFELASSLLR-SGFKVQ-AFEIST--PLMEKFC----ELGGHRCDSPAEAAK------DAAALVVVL   68 (1378)
T ss_pred             CCeEEEEch-hHHHHHHHHHHHH-CCCeEE-EEcCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEEc
Confidence            358999996 9999999999886 478875 677642  2233333    346677889999885      789888543


Q ss_pred             C-chhHHHHH---HHHH---HCCCcEEEeCCCCCHHHHHHHHHHhhhcC--ceEEEcCC
Q 027650          115 D-ASTVYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKAS--MGCLIAPT  164 (220)
Q Consensus       115 ~-p~~~~~~~---~~al---~~G~~vVigTtG~~~e~~~~L~~aA~~~~--v~vviapN  164 (220)
                      + ++.+.+.+   .-.+   +.| .+|+-.+..+++...++.+.+++.|  +..+=+|=
T Consensus        69 ~~~~~v~~V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPV  126 (1378)
T PLN02858         69 SHPDQVDDVFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYV  126 (1378)
T ss_pred             CChHHHHHHHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccC
Confidence            3 33333333   1222   234 3666666777888889988888877  66554443

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.83  E-value=0.019  Score=49.78  Aligned_cols=120  Identities=13%  Similarity=0.105  Sum_probs=63.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCC---HHHHHhccccCCC-ccEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSD---LTMVLGSISQSKA-RAVVI  111 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~d---l~~~l~~~~~~~~-~DVVI  111 (220)
                      ||.|.|+||.+|+.+++.+.+ .+.++.+++.+.....    ..+.   ..+.. +.|   +.+++.....-.. +|.++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~-~g~~V~~~~R~~~~~~----~~~~---~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~   72 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQA-ASVPFLVASRSSSSSA----GPNE---KHVKFDWLDEDTWDNPFSSDDGMEPEISAVY   72 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHh-CCCcEEEEeCCCcccc----CCCC---ccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence            589999999999999999876 4788887765421100    0111   01111 233   4444420000014 78877


Q ss_pred             EccCc-----hhHHHHHHHHHHCCCcEEEeCC--CC--CHHHHHHHHHHhhhc-CceEE-EcCC
Q 027650          112 DFTDA-----STVYDNVKQATAFGMRSVVYVP--HI--QLETVSALSAFCDKA-SMGCL-IAPT  164 (220)
Q Consensus       112 DfT~p-----~~~~~~~~~al~~G~~vVigTt--G~--~~e~~~~L~~aA~~~-~v~vv-iapN  164 (220)
                      .++.+     ......+..|.++|+.-|+-++  +.  .......++++.++. +++.. +-|+
T Consensus        73 ~~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~  136 (285)
T TIGR03649        73 LVAPPIPDLAPPMIKFIDFARSKGVRRFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPT  136 (285)
T ss_pred             EeCCCCCChhHHHHHHHHHHHHcCCCEEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEecc
Confidence            55432     2234556778889975443332  21  111223445555553 67654 4455

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.82  E-value=0.0024  Score=55.78  Aligned_cols=119  Identities=18%  Similarity=0.225  Sum_probs=78.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC--ccccC----------CH-HH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE--IPVMS----------DL-TM   96 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~g--v~v~~----------dl-~~   96 (220)
                      -.||+|-|. |++|+..++.+.+. +..++++.|+     +..|-|..++..+.+..+  +..+.          +- ++
T Consensus        32 g~~v~IqGf-G~VG~~~a~~l~~~-Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  109 (244)
T PF00208_consen   32 GKRVAIQGF-GNVGSHAARFLAEL-GAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDE  109 (244)
T ss_dssp             TCEEEEEES-SHHHHHHHHHHHHT-TEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHc-CCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccc
Confidence            369999997 99999999999875 9999999884     334667666654211111  11111          22 26


Q ss_pred             HHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650           97 VLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      ++.     .++||+|=+..+... .+++...++.|.++|+|--  .++++..+    .-+++  .+++.|.|.
T Consensus       110 il~-----~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~----~L~~r--GI~viPD~~  171 (244)
T PF00208_consen  110 ILS-----VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE----ILRER--GILVIPDFL  171 (244)
T ss_dssp             GGT-----SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH----HHHHT--T-EEE-HHH
T ss_pred             ccc-----ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH----HHHHC--CCEEEcchh
Confidence            776     489999988877666 4677767899999999876  35665443    33343  466666653

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK06046 alanine dehydrogenase; Validated

Probab=96.81  E-value=0.0021  Score=58.12  Aligned_cols=91  Identities=15%  Similarity=0.152  Sum_probs=61.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCC--ccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..+|+|+|+ |.+|+.+++.+...++++.+.+++++.  ....++.. ..+..+  +.+++|+++++       .+|+|+
T Consensus       129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~l-------~aDiVv  198 (326)
T PRK06046        129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTK--SSAEKFVERMSSVVGCDVTVAEDIEEAC-------DCDILV  198 (326)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHh-------hCCEEE
Confidence            358999996 999999999998889999999999753  11122221 011223  45578999887       389999


Q ss_pred             EccCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650          112 DFTDASTVYDNV-KQATAFGMRSV-VYV  137 (220)
Q Consensus       112 DfT~p~~~~~~~-~~al~~G~~vV-igT  137 (220)
                      .+|+...  +.+ ...++.|.+|. ||.
T Consensus       199 ~aTps~~--P~~~~~~l~~g~hV~~iGs  224 (326)
T PRK06046        199 TTTPSRK--PVVKAEWIKEGTHINAIGA  224 (326)
T ss_pred             EecCCCC--cEecHHHcCCCCEEEecCC
Confidence            7665322  222 33468899986 663

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.79  E-value=0.0089  Score=54.57  Aligned_cols=96  Identities=20%  Similarity=0.204  Sum_probs=59.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh-----------hhhcCCCCCCcccc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG-----------MVCDMEQPLEIPVM   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-----g-------~d~g-----------~l~g~~~~~gv~v~   91 (220)
                      ..||+|+|+ |.+|..+++.+.. .++.-+.++|++..     +       .|++           .+..+.....+..+
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~-aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVR-AGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            358999998 9999999999876 47766778886421     0       1111           01111001111111


Q ss_pred             ------CCHHHHHhccccCCCccEEEEccCchhHH-HHHHHHHHCCCcEEEeCC
Q 027650           92 ------SDLTMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        92 ------~dl~~~l~~~~~~~~~DVVIDfT~p~~~~-~~~~~al~~G~~vVigTt  138 (220)
                            .++++++.      ++|+|||.+...... -.-..|.++|+|+|.|..
T Consensus       102 ~~~~~~~~~~~~~~------~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~  149 (338)
T PRK12475        102 VTDVTVEELEELVK------EVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGC  149 (338)
T ss_pred             eccCCHHHHHHHhc------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                  23455554      799999998655443 344788899999997643

>COG1810 Uncharacterized protein conserved in archaea [Function unknown]

Probab=96.79  E-value=0.03  Score=48.24  Aligned_cols=154  Identities=12%  Similarity=0.128  Sum_probs=100.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ||||+|+.- |.-|.+.+..+..+ =..+++++.+.+.   ..           ....+.+++.|..+   .++|++|-+
T Consensus         1 ~mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~Pe---~~-----------~~fie~P~~~Lp~~---~e~Di~va~   62 (224)
T COG1810           1 MMKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYPE---EL-----------PDFIEEPEDLLPKL---PEADIVVAY   62 (224)
T ss_pred             CcEEEEEee-ccchHHHHHhHhhhccccceEEEEeccc---cc-----------cchhhCHHHhcCCC---CCCCEEEEe
Confidence            799999985 99999999998854 2356777776421   01           11234566777632   478998877


Q ss_pred             c-CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc-------CCCcHHHHHHHHHHHHhcCCCCC
Q 027650          114 T-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-------PTLSIGSILLQQAAISASFHYKN  185 (220)
Q Consensus       114 T-~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia-------pNfS~Gv~ll~~~a~~~~~~~~d  185 (220)
                      + +|+..++..+.+...|...||=-.+-.....++|++.+.+.|+-+...       ||=   .-.+.+|+....+.-..
T Consensus        63 ~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~---~p~i~~F~e~FG~P~ve  139 (224)
T COG1810          63 GLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEPNE---NPHIDEFAERFGKPEVE  139 (224)
T ss_pred             ccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeeecCCccccCCCCC---ChHHHHHHHHcCCceEE
Confidence            5 799999999988888877665322333466678899998877766532       342   22367777666443222


Q ss_pred             eE-----EEeccCCCCCCCCchhhHHHHHHh
Q 027650          186 VE-----IVESRPNARMQLKSPTTSPTLVRS  211 (220)
Q Consensus       186 iE-----IiE~HH~~K~DaPSGTA~~~~~~~  211 (220)
                      +|     |...  .=++.||=|.+.-++.|-
T Consensus       140 vev~~~~i~~V--~V~RsaPCGsT~~vAk~l  168 (224)
T COG1810         140 VEVENGKIKDV--DVLRSAPCGSTWYVAKRL  168 (224)
T ss_pred             EEecCCeEEEE--EEEecCCCchHHHHHHHh
Confidence            22     1222  335689999988776654

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.78  E-value=0.0078  Score=54.66  Aligned_cols=106  Identities=17%  Similarity=0.143  Sum_probs=62.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .-++|+|+|+ |+||+.+++.+...-++++.+ +|+... ...        ...+....++++++.      .+|+|+-.
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~~V~~-~d~~~~-~~~--------~~~~~~~~~l~ell~------~aDvIvl~  207 (332)
T PRK08605        145 KDLKVAVIGT-GRIGLAVAKIFAKGYGSDVVA-YDPFPN-AKA--------ATYVDYKDTIEEAVE------GADIVTLH  207 (332)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCcc-HhH--------HhhccccCCHHHHHH------hCCEEEEe
Confidence            3468999997 999999999985444788775 565321 111        112334568999986      79998855


Q ss_pred             cCchhHHHHH-----HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCc
Q 027650          114 TDASTVYDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (220)
Q Consensus       114 T~p~~~~~~~-----~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v  157 (220)
                      .+.......+     ...++.|.-+|--+.|.-.++ +.|.++.+++.+
T Consensus       208 lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~-~aL~~aL~~g~i  255 (332)
T PRK08605        208 MPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDT-KALLDALDNGLI  255 (332)
T ss_pred             CCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCH-HHHHHHHHhCCe
Confidence            4322222222     334566664454344654433 445555555444

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.76  E-value=0.009  Score=51.97  Aligned_cols=96  Identities=23%  Similarity=0.305  Sum_probs=57.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchh---------hhhcCCCCCCcccc--
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIG---------MVCDMEQPLEIPVM--   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-----g-------~d~g---------~l~g~~~~~gv~v~--   91 (220)
                      ..||+|+|+ |.+|..+++.+... ++.=..++|.+..     +       .++|         .+..+.....+..+  
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~~-Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~  101 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAAA-GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINA  101 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHc-CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            358999998 99999999998764 7766677885321     1       0111         01001001111111  


Q ss_pred             ----CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                          +++++++.      ++|+|||++..... ...-..|.++++|+|.|..
T Consensus       102 ~i~~~~~~~~~~------~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~  147 (240)
T TIGR02355       102 KLDDAELAALIA------EHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAA  147 (240)
T ss_pred             cCCHHHHHHHhh------cCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                12344453      78999998754433 4556888999999997643

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.75  E-value=0.019  Score=53.05  Aligned_cols=117  Identities=9%  Similarity=0.030  Sum_probs=69.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCccccCCHHH--HHhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM--VLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~--~l~~~~~~~~~DVV  110 (220)
                      +||||+|+||-+|+.+++.+.+++++.   +..+..+...|+.. .+.+    ....+ .++++  .+      .+.|++
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~-~f~~----~~~~v-~~~~~~~~~------~~vDiv   68 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAP-SFGG----TTGTL-QDAFDIDAL------KALDII   68 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcC-CCCC----CcceE-EcCcccccc------cCCCEE
Confidence            489999999999999999998777765   44444433333322 1111    11222 23322  23      279998


Q ss_pred             EEccCchhH-HHHHHHHHHCCCc-EEEeCC-CC-------------CHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          111 IDFTDASTV-YDNVKQATAFGMR-SVVYVP-HI-------------QLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G~~-vVigTt-G~-------------~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      + |+.+... .+....+.++|.+ +||-.+ .|             +++.   |... .+.|+.-+..||=|.-.
T Consensus        69 f-fa~g~~~s~~~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~---i~~~-~~~gi~~ianPNCst~~  138 (366)
T TIGR01745        69 I-TCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDV---ITDG-LNNGIRTFVGGNCTVSL  138 (366)
T ss_pred             E-EcCCHHHHHHHHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHH---HHhH-HhCCcCeEECcCHHHHH
Confidence            8 7655544 6778889999975 444443 22             4543   3332 34555447789966544

>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.74  E-value=0.022  Score=50.52  Aligned_cols=131  Identities=15%  Similarity=0.245  Sum_probs=82.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecC--CCCcch------hhhhc-CCCCCCccccCCHHHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSH--SVGEDI------GMVCD-MEQPLEIPVMSDLTMV   97 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~--~~g~d~------g~l~g-~~~~~gv~v~~dl~~~   97 (220)
                      +++|++.|| |.+|+.+...+....        .+.+|+++|..  ...+|.      .+|.. +-...+ . .-+++++
T Consensus         3 ~vnVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~-~-alsLdaL   79 (364)
T KOG0455|consen    3 KVNVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTG-S-ALSLDAL   79 (364)
T ss_pred             cccEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcC-C-cccHHHH
Confidence            578999997 999999988776432        36899999842  122222      11111 000111 1 1247777


Q ss_pred             HhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC---CCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH
Q 027650           98 LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (220)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt---G~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l  171 (220)
                      ++.+...+.+=+++|.|......+....+++.|+.++  ||   .|+. ..+..++++.....|-++--.-++|+-|
T Consensus        80 ia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~Ia--tpNKKafss-~l~~y~~l~~~~~s~~fi~HEatVGAGL  153 (364)
T KOG0455|consen   80 IAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIA--TPNKKAFSS-TLEHYDKLALHSKSPRFIRHEATVGAGL  153 (364)
T ss_pred             HHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEe--cCCcccccc-cHHHHHHHHhcCCCCceEEeeccccCCc
Confidence            7665555667799999999999999999999999988  45   4543 2234444444444565655555666644

>PLN03139 formate dehydrogenase; Provisional

Probab=96.73  E-value=0.02  Score=53.27  Aligned_cols=108  Identities=18%  Similarity=0.140  Sum_probs=63.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .-.+|+|+|. |+||+.+++.+.. -++++.+ +|+..  .+.. ..   ...|+..++++++++.      .+|+|+..
T Consensus       198 ~gktVGIVG~-G~IG~~vA~~L~a-fG~~V~~-~d~~~--~~~~-~~---~~~g~~~~~~l~ell~------~sDvV~l~  262 (386)
T PLN03139        198 EGKTVGTVGA-GRIGRLLLQRLKP-FNCNLLY-HDRLK--MDPE-LE---KETGAKFEEDLDAMLP------KCDVVVIN  262 (386)
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHH-CCCEEEE-ECCCC--cchh-hH---hhcCceecCCHHHHHh------hCCEEEEe
Confidence            3468999996 9999999999876 5899875 67532  1111 11   1335555679999996      79988854


Q ss_pred             cC-chhHHH----HHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCce
Q 027650          114 TD-ASTVYD----NVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG  158 (220)
Q Consensus       114 T~-p~~~~~----~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~  158 (220)
                      .+ ++.+..    .....++.|. ++|-+. |---+ .+.|.++.+++.+.
T Consensus       263 lPlt~~T~~li~~~~l~~mk~ga-~lIN~aRG~iVD-e~AL~~AL~sG~l~  311 (386)
T PLN03139        263 TPLTEKTRGMFNKERIAKMKKGV-LIVNNARGAIMD-TQAVADACSSGHIG  311 (386)
T ss_pred             CCCCHHHHHHhCHHHHhhCCCCe-EEEECCCCchhh-HHHHHHHHHcCCce
Confidence            43 122222    2233344454 444444 42222 24566665555553

>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]

Probab=96.72  E-value=0.0059  Score=53.74  Aligned_cols=99  Identities=20%  Similarity=0.228  Sum_probs=62.5

Q ss_pred             CCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHH---HHhccccCCC
Q 027650           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM---VLGSISQSKA  106 (220)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~---~l~~~~~~~~  106 (220)
                      .-+...+||++.||.|+.|+.+++++..+|-+|+.-+..+...|+.+..+..    ..+. |.|+..   ...+  ....
T Consensus        14 ~~~~k~~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~ytk----~eiq-y~~lst~D~~kle--e~~a   86 (340)
T KOG4354|consen   14 VKPEKDIRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYTK----LEIQ-YADLSTVDAVKLE--EPHA   86 (340)
T ss_pred             cccCCCceEEEEeccccchhhHHHHhcCCCceEEEeeehhhhcCCcccCcch----hhee-ecccchhhHHHhh--cCCc
Confidence            3345668999999999999999999999999999988877777776654332    1221 333222   1111  0123


Q ss_pred             ccEEEEccCchhHHHHHHHHH--HCCCcEEEe
Q 027650          107 RAVVIDFTDASTVYDNVKQAT--AFGMRSVVY  136 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al--~~G~~vVig  136 (220)
                      .|.++ |..|..+.+-...++  .+|+..+|-
T Consensus        87 vd~wv-maLPn~vckpfv~~~~s~~gks~iid  117 (340)
T KOG4354|consen   87 VDHWV-MALPNQVCKPFVSLTESSDGKSRIID  117 (340)
T ss_pred             eeeee-eecchhhHHHHHHHHhhcCCceeeee
Confidence            45555 788888764443333  345555543

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.71  E-value=0.0028  Score=57.45  Aligned_cols=91  Identities=12%  Similarity=0.027  Sum_probs=61.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .+++|+|+ |.||+.+++.+.....++-+.++++..  ..+..+...-..++  +.++++.++++.      ++|+||-+
T Consensus       129 ~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~--~~~~~~~~~~~~~g~~v~~~~~~~eav~------~aDiVita  199 (325)
T TIGR02371       129 SVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTP--STREKFALRASDYEVPVRAATDPREAVE------GCDILVTT  199 (325)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhhCCcEEEeCCHHHHhc------cCCEEEEe
Confidence            58999996 999999999998878889999998742  11222211000234  456789999985      79999965


Q ss_pred             cCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650          114 TDASTVYDNV-KQATAFGMRSV-VYV  137 (220)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vV-igT  137 (220)
                      |+ ... +.+ ...++.|.++. ||+
T Consensus       200 T~-s~~-P~~~~~~l~~g~~v~~vGs  223 (325)
T TIGR02371       200 TP-SRK-PVVKADWVSEGTHINAIGA  223 (325)
T ss_pred             cC-CCC-cEecHHHcCCCCEEEecCC
Confidence            53 222 222 34568999986 664

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]

Probab=96.67  E-value=0.029  Score=49.37  Aligned_cols=132  Identities=13%  Similarity=0.126  Sum_probs=81.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE-ecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI-DSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v-d~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ++++|.|.|+| .=++.+++.+...+...++... ++   |.+..+..+-.-..|---.+-+.+.+.+    .++|.+||
T Consensus         1 ~~~~ilvlGGT-~Dar~la~~L~~~~~~~~~ss~t~~---g~~l~~~~~~~~~~G~l~~e~l~~~l~e----~~i~llID   72 (257)
T COG2099           1 SMMRILLLGGT-SDARALAKKLAAAPVDIILSSLTGY---GAKLAEQIGPVRVGGFLGAEGLAAFLRE----EGIDLLID   72 (257)
T ss_pred             CCceEEEEecc-HHHHHHHHHhhccCccEEEEEcccc---cccchhccCCeeecCcCCHHHHHHHHHH----cCCCEEEE
Confidence            46899999986 5689999999888754444332 22   2222211110000010002334455553    68999999


Q ss_pred             ccCchhHH--HH-HHHHHHCCCcEE-EeCCCCCH--------HHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHH
Q 027650          113 FTDASTVY--DN-VKQATAFGMRSV-VYVPHIQL--------ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (220)
Q Consensus       113 fT~p~~~~--~~-~~~al~~G~~vV-igTtG~~~--------e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~  177 (220)
                      .|+|-+..  +| ++.|-+.|++.+ .+-|++..        ++.+++.+++++.+-.|+.    .+|.+-+..|.+
T Consensus        73 ATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVfl----t~G~~~l~~f~~  145 (257)
T COG2099          73 ATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFL----TTGRQNLAHFVA  145 (257)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEE----ecCccchHHHhc
Confidence            99997763  44 578888999987 44555432        5566777777777777777    667766665653

>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=96.67  E-value=0.0097  Score=56.56  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=30.9

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEec
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS   69 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd~   69 (220)
                      ....||+|+|. ||+||.+.|.+.+.    ++++|+++.++
T Consensus       125 ~~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~~  164 (477)
T PRK08289        125 IEPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVVR  164 (477)
T ss_pred             CCCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEecC
Confidence            45679999996 99999999998766    68999999753

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.66  E-value=0.0073  Score=53.97  Aligned_cols=78  Identities=23%  Similarity=0.294  Sum_probs=54.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc-
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT-  114 (220)
                      |||.|.|++|.+|+.+.+.+.  ++.++++...++               .++.-.+.+.+++.+    .+||+||.+. 
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~----~~PDvVIn~AA   59 (281)
T COG1091           1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE---------------LDITDPDAVLEVIRE----TRPDVVINAAA   59 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc---------------ccccChHHHHHHHHh----hCCCEEEECcc
Confidence            569999999999999999876  788888754332               122334456677764    5899999753 


Q ss_pred             --C-------ch--------hHHHHHHHHHHCCCcEE
Q 027650          115 --D-------AS--------TVYDNVKQATAFGMRSV  134 (220)
Q Consensus       115 --~-------p~--------~~~~~~~~al~~G~~vV  134 (220)
                        .       |+        .....++.|.+.|..+|
T Consensus        60 yt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lV   96 (281)
T COG1091          60 YTAVDKAESEPELAFAVNATGAENLARAAAEVGARLV   96 (281)
T ss_pred             ccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEE
Confidence              1       22        22345678888998887

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=96.64  E-value=0.023  Score=45.68  Aligned_cols=103  Identities=15%  Similarity=0.143  Sum_probs=74.6

Q ss_pred             ceEEEEcCCCH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .+|+|+|++-+   -+-.+.+.+.+ .|.++..+ .|...|   ++++      |-++|.++.++-.      ..|+|..
T Consensus        17 K~IAvVG~S~~P~r~sy~V~kyL~~-~GY~ViPV-NP~~~~---~eiL------G~k~y~sL~dIpe------~IDiVdv   79 (140)
T COG1832          17 KTIAVVGASDKPDRPSYRVAKYLQQ-KGYRVIPV-NPKLAG---EEIL------GEKVYPSLADIPE------PIDIVDV   79 (140)
T ss_pred             ceEEEEecCCCCCccHHHHHHHHHH-CCCEEEee-Ccccch---HHhc------CchhhhcHHhCCC------CCcEEEE
Confidence            47999999865   44556666655 58999875 343323   3444      5578999998864      8999888


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCce
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~  158 (220)
                      |-.|+.+.+.++.+++.|..+|=.-.|...++.   .+.+++.|..
T Consensus        80 FR~~e~~~~i~~eal~~~~kv~W~QlGi~n~ea---~~~~~~aG~~  122 (140)
T COG1832          80 FRRSEAAPEVAREALEKGAKVVWLQLGIRNEEA---AEKARDAGLD  122 (140)
T ss_pred             ecChhhhHHHHHHHHhhCCCeEEEecCcCCHHH---HHHHHHhCcH
Confidence            999999999999999999999977778655443   3344444443

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.63  E-value=0.018  Score=48.54  Aligned_cols=87  Identities=10%  Similarity=0.173  Sum_probs=53.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .++|+|.|. |+||+.+++.+.+ .+.+++ ++|++.  ....++..   .++.... +.++++.     .++|+++-++
T Consensus        28 gk~v~I~G~-G~vG~~~A~~L~~-~G~~Vv-v~D~~~--~~~~~~~~---~~g~~~v-~~~~l~~-----~~~Dv~vp~A   93 (200)
T cd01075          28 GKTVAVQGL-GKVGYKLAEHLLE-EGAKLI-VADINE--EAVARAAE---LFGATVV-APEEIYS-----VDADVFAPCA   93 (200)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEcCCH--HHHHHHHH---HcCCEEE-cchhhcc-----ccCCEEEecc
Confidence            368999997 9999999999876 488999 677532  12222221   2233333 3355554     3799988554


Q ss_pred             CchhH-HHHHHHHHHCCCcEEEeCC
Q 027650          115 DASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                      .-... .+++.   +-+..+|++--
T Consensus        94 ~~~~I~~~~~~---~l~~~~v~~~A  115 (200)
T cd01075          94 LGGVINDDTIP---QLKAKAIAGAA  115 (200)
T ss_pred             cccccCHHHHH---HcCCCEEEECC
Confidence            43322 33333   44677888765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=96.63  E-value=0.0096  Score=54.77  Aligned_cols=101  Identities=12%  Similarity=0.056  Sum_probs=63.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .++|||+|. |.||+.+++.+..+ |..|.. +|+.. =.++.      ..+|...|+++.++..+     .+|+|+-+|
T Consensus        52 tl~IaIIGf-GnmGqflAetli~a-Gh~li~-hsRsd-yssaa------~~yg~~~ft~lhdlcer-----hpDvvLlct  116 (480)
T KOG2380|consen   52 TLVIAIIGF-GNMGQFLAETLIDA-GHGLIC-HSRSD-YSSAA------EKYGSAKFTLLHDLCER-----HPDVVLLCT  116 (480)
T ss_pred             ceEEEEEec-CcHHHHHHHHHHhc-CceeEe-cCcch-hHHHH------HHhcccccccHHHHHhc-----CCCEEEEEe
Confidence            479999996 99999999998864 666654 34321 11222      25666778999887764     899999776


Q ss_pred             CchhHHHHHH---HH-HHCCCcEEEeCCCCCHHHHHHHHHH
Q 027650          115 DASTVYDNVK---QA-TAFGMRSVVYVPHIQLETVSALSAF  151 (220)
Q Consensus       115 ~p~~~~~~~~---~a-l~~G~~vVigTtG~~~e~~~~L~~a  151 (220)
                      ........++   .. ++.|. +|+|-+.-.+-+.+.++++
T Consensus       117 silsiekilatypfqrlrrgt-lfvdvlSvKefek~lfekY  156 (480)
T KOG2380|consen  117 SILSIEKILATYPFQRLRRGT-LFVDVLSVKEFEKELFEKY  156 (480)
T ss_pred             hhhhHHHHHHhcCchhhccce-eEeeeeecchhHHHHHHHh
Confidence            5544444333   23 45554 3446665444444555444

>PRK07574 formate dehydrogenase; Provisional

Probab=96.63  E-value=0.023  Score=52.92  Aligned_cols=108  Identities=17%  Similarity=0.159  Sum_probs=63.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .-++|+|+|. |+||+.+++.+... ++++.+ +|+.....+.   .   ...++..+.++++++.      .+|+|+..
T Consensus       191 ~gktVGIvG~-G~IG~~vA~~l~~f-G~~V~~-~dr~~~~~~~---~---~~~g~~~~~~l~ell~------~aDvV~l~  255 (385)
T PRK07574        191 EGMTVGIVGA-GRIGLAVLRRLKPF-DVKLHY-TDRHRLPEEV---E---QELGLTYHVSFDSLVS------VCDVVTIH  255 (385)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCEEEE-ECCCCCchhh---H---hhcCceecCCHHHHhh------cCCEEEEc
Confidence            3468999996 99999999988764 888875 5653211111   1   1234555679999986      79998854


Q ss_pred             cCc-hhHH----HHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCce
Q 027650          114 TDA-STVY----DNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG  158 (220)
Q Consensus       114 T~p-~~~~----~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~  158 (220)
                      .+- ..+.    +.....++.|. ++|-+. |---+ .+.|.++.+.+.+.
T Consensus       256 lPlt~~T~~li~~~~l~~mk~ga-~lIN~aRG~iVD-e~AL~~AL~sG~i~  304 (385)
T PRK07574        256 CPLHPETEHLFDADVLSRMKRGS-YLVNTARGKIVD-RDAVVRALESGHLA  304 (385)
T ss_pred             CCCCHHHHHHhCHHHHhcCCCCc-EEEECCCCchhh-HHHHHHHHHhCCcc
Confidence            431 1111    22334455665 444443 43222 24555555555553

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.62  E-value=0.02  Score=50.45  Aligned_cols=99  Identities=12%  Similarity=0.206  Sum_probs=55.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------cC--CC---------CCCccccCCHH
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------DM--EQ---------PLEIPVMSDLT   95 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~---------g~--~~---------~~gv~v~~dl~   95 (220)
                      -||+|+|+ |.||..++..+... +.++. ++|++.  ..+..+.         +.  +.         ..++..+++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~-G~~V~-~~d~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~   76 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVS-GFQTT-LVDIKQ--EQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK   76 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhC-CCcEE-EEeCCH--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH
Confidence            47999997 99999999988764 77766 456531  1111100         00  00         01234567887


Q ss_pred             HHHhccccCCCccEEEEccCchhH-----HHHHHHHHHCCCcEEEeCCCCCHHHH
Q 027650           96 MVLGSISQSKARAVVIDFTDASTV-----YDNVKQATAFGMRSVVYVPHIQLETV  145 (220)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-----~~~~~~al~~G~~vVigTtG~~~e~~  145 (220)
                      +++.      ++|+||.+.+.+..     +..+...+..+.-+++-|+.++..+.
T Consensus        77 ~~~~------~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l  125 (288)
T PRK09260         77 AAVA------DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEI  125 (288)
T ss_pred             Hhhc------CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence            7775      78998865443321     12223333444444455666766543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.62  E-value=0.024  Score=52.90  Aligned_cols=120  Identities=13%  Similarity=0.124  Sum_probs=72.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhhcCCCCCC-ccccCCHHHHHhcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSI  101 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~l~g~~~~~g-v~v~~dl~~~l~~~  101 (220)
                      |||.|+| +|++|-.....+.+. +.+++++ |.+             ....-+.+++......| ...++|+++++.  
T Consensus         1 MkI~viG-tGYVGLv~g~~lA~~-GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~--   75 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLAEL-GHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVK--   75 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHHHc-CCeEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHh--
Confidence            7999999 599999888777664 7888874 521             01112333332111112 566888988886  


Q ss_pred             ccCCCccEEEEcc--Cch--h---------HHHHHHHHHHCCCcEEEeCC----CCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          102 SQSKARAVVIDFT--DAS--T---------VYDNVKQATAFGMRSVVYVP----HIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       102 ~~~~~~DVVIDfT--~p~--~---------~~~~~~~al~~G~~vVigTt----G~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                          +.|+++.++  ++.  .         +.+.+..+++ +.++|+.+.    |.+++-.+.+.+........++++|-
T Consensus        76 ----~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~-~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPE  150 (414)
T COG1004          76 ----DADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILD-GKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPE  150 (414)
T ss_pred             ----cCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcC-CCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChH
Confidence                789888764  322  1         1122222222 336666654    78777666666665444566788777


Q ss_pred             C
Q 027650          165 L  165 (220)
Q Consensus       165 f  165 (220)
                      |
T Consensus       151 F  151 (414)
T COG1004         151 F  151 (414)
T ss_pred             H
Confidence            6

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.62  E-value=0.019  Score=52.39  Aligned_cols=95  Identities=15%  Similarity=0.145  Sum_probs=64.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc---hhhhhcCCCC-----CCccccCCHHHHHhccccCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED---IGMVCDMEQP-----LEIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d---~g~l~g~~~~-----~gv~v~~dl~~~l~~~~~~~  105 (220)
                      .+++|.|.||+|.+|+.+++.+++ .|.++.|.++....-+.   +.++-+.+++     -++.-+++++++++      
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~-rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------   77 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLS-RGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------   77 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHh-CCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence            567999999999999999999987 59999999975322111   2222222111     12333567888886      


Q ss_pred             CccEEEEccCc-----------------hhHHHHHHHHHHCC--CcEEE
Q 027650          106 ARAVVIDFTDA-----------------STVYDNVKQATAFG--MRSVV  135 (220)
Q Consensus       106 ~~DVVIDfT~p-----------------~~~~~~~~~al~~G--~~vVi  135 (220)
                      ++|.|+..+.|                 ..+...++.|.+..  +++|.
T Consensus        78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~  126 (327)
T KOG1502|consen   78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVY  126 (327)
T ss_pred             CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEE
Confidence            89999976543                 12334667888888  66765

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.61  E-value=0.02  Score=52.28  Aligned_cols=94  Identities=13%  Similarity=0.123  Sum_probs=58.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|+ |+||+.+++.+.. .+++++....+..  +. .+.+   ...|+.+. +++++..      .+|+|+...
T Consensus        17 gktIgIIG~-GsmG~AlA~~L~~-sG~~Vvv~~r~~~--~s-~~~A---~~~G~~~~-s~~eaa~------~ADVVvLaV   81 (330)
T PRK05479         17 GKKVAIIGY-GSQGHAHALNLRD-SGVDVVVGLREGS--KS-WKKA---EADGFEVL-TVAEAAK------WADVIMILL   81 (330)
T ss_pred             CCEEEEEee-HHHHHHHHHHHHH-CCCEEEEEECCch--hh-HHHH---HHCCCeeC-CHHHHHh------cCCEEEEcC
Confidence            358999997 9999999999876 4788876544321  11 1111   12344444 7888875      799999666


Q ss_pred             CchhHHHHH-HHH---HHCCCcEEEeCCCCCHHH
Q 027650          115 DASTVYDNV-KQA---TAFGMRSVVYVPHIQLET  144 (220)
Q Consensus       115 ~p~~~~~~~-~~a---l~~G~~vVigTtG~~~e~  144 (220)
                      ++....+.+ ...   ++.|.-+ +=..|++-..
T Consensus        82 Pd~~~~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~  114 (330)
T PRK05479         82 PDEVQAEVYEEEIEPNLKEGAAL-AFAHGFNIHF  114 (330)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCEE-EECCCCChhh
Confidence            666554444 222   3345444 4466877643

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.60  E-value=0.025  Score=48.03  Aligned_cols=121  Identities=16%  Similarity=0.117  Sum_probs=65.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-----CCCCCCc--cc-cCCHHHHHhccccCCCc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-----MEQPLEI--PV-MSDLTMVLGSISQSKAR  107 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-----~~~~~gv--~v-~~dl~~~l~~~~~~~~~  107 (220)
                      |||+|+|++|+||+.+++.+.+. +.++.. +++..  +.+..+..     .. ..++  .+ ..+..+++.      .+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~-G~~V~v-~~r~~--~~~~~l~~~~~~~~~-~~g~~~~~~~~~~~ea~~------~a   69 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKA-GNKIII-GSRDL--EKAEEAAAKALEELG-HGGSDIKVTGADNAEAAK------RA   69 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC-CCEEEE-EEcCH--HHHHHHHHHHHhhcc-ccCCCceEEEeChHHHHh------cC
Confidence            58999985699999999998764 677764 45431  11111110     00 1121  12 235556664      78


Q ss_pred             cEEEEccCchhHHHHHHHHHH--CCCcEEEeCC-CCCHH--------------HHHHHHHHhhhcCceEEEc-CCCcHHH
Q 027650          108 AVVIDFTDASTVYDNVKQATA--FGMRSVVYVP-HIQLE--------------TVSALSAFCDKASMGCLIA-PTLSIGS  169 (220)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~--~G~~vVigTt-G~~~e--------------~~~~L~~aA~~~~v~vvia-pNfS~Gv  169 (220)
                      |+||-+.++....+.+.....  .+ .+|+-++ |++.+              -.+.|.++.- .+.+++-+ ||+...+
T Consensus        70 DvVilavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p-~~~~VVka~~~~~a~~  147 (219)
T TIGR01915        70 DVVILAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLP-ETSRVVAAFHNLSAVL  147 (219)
T ss_pred             CEEEEECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCC-CCCeEeeccccCCHHH
Confidence            999966666666555544322  34 4555443 65431              0133444431 12577877 6666555

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.58  E-value=0.024  Score=50.39  Aligned_cols=31  Identities=23%  Similarity=0.431  Sum_probs=25.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      -||+|+|+ |.||+.++..+... +++++ ++|.
T Consensus         6 ~~V~ViGa-G~mG~~iA~~~a~~-G~~V~-l~d~   36 (286)
T PRK07819          6 QRVGVVGA-GQMGAGIAEVCARA-GVDVL-VFET   36 (286)
T ss_pred             cEEEEEcc-cHHHHHHHHHHHhC-CCEEE-EEEC
Confidence            48999997 99999999887764 88866 4564

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.56  E-value=0.012  Score=52.87  Aligned_cols=81  Identities=23%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc--ccCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ...||+|+|+ |.||+.+++.+.. .+..-+.+++++.  ..+.+++.   .+|..  .++++.+.+.      ++|+||
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~-~g~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVi  243 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAA-KGVAEITIANRTY--ERAEELAK---ELGGNAVPLDELLELLN------EADVVI  243 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHH-cCCCEEEEEeCCH--HHHHHHHH---HcCCeEEeHHHHHHHHh------cCCEEE
Confidence            3579999997 9999999998876 4555566677642  12222321   22222  2345666664      689999


Q ss_pred             EccCchhHHHHHHHHH
Q 027650          112 DFTDASTVYDNVKQAT  127 (220)
Q Consensus       112 DfT~p~~~~~~~~~al  127 (220)
                      .+|......+....++
T Consensus       244 ~at~~~~~~~~~~~~~  259 (311)
T cd05213         244 SATGAPHYAKIVERAM  259 (311)
T ss_pred             ECCCCCchHHHHHHHH
Confidence            8776544434344433

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.55  E-value=0.026  Score=51.75  Aligned_cols=92  Identities=22%  Similarity=0.154  Sum_probs=58.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|+|+|+ |.+|...++.+... +.+++++-.++..-+++.++ |.  .. +...  .+.-+.+.     ..+|++||+.
T Consensus       169 ~V~I~G~-GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l-GA--d~-~i~~~~~~~~~~~~-----~~~d~ii~tv  237 (339)
T COG1064         169 WVAVVGA-GGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL-GA--DH-VINSSDSDALEAVK-----EIADAIIDTV  237 (339)
T ss_pred             EEEEECC-cHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh-CC--cE-EEEcCCchhhHHhH-----hhCcEEEECC
Confidence            8999998 89999999877765 59999865543211222222 11  11 1111  12223332     1399999998


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                      .+......++.+...|.-+++|-++
T Consensus       238 ~~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         238 GPATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             ChhhHHHHHHHHhcCCEEEEECCCC
Confidence            8555566677777788888888875

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.52  E-value=0.011  Score=52.24  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=24.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +.||+|+|+ |.||..++..+... +.++. ++|+
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~-G~~V~-l~d~   34 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFH-GFDVT-IYDI   34 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhc-CCeEE-EEeC
Confidence            358999997 99999999888764 67755 4554

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.50  E-value=0.021  Score=50.95  Aligned_cols=32  Identities=44%  Similarity=0.454  Sum_probs=26.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      +||+|+|+ |.||..++..+... +.+++ ++|+.
T Consensus         3 ~~V~VIG~-G~mG~~iA~~la~~-G~~V~-v~d~~   34 (308)
T PRK06129          3 GSVAIIGA-GLIGRAWAIVFARA-GHEVR-LWDAD   34 (308)
T ss_pred             cEEEEECc-cHHHHHHHHHHHHC-CCeeE-EEeCC
Confidence            58999996 99999999988875 77766 46653

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.50  E-value=0.0093  Score=49.49  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=51.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-----cchhh----hhcCCC---------CCCccccCCHHHHH
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----EDIGM----VCDMEQ---------PLEIPVMSDLTMVL   98 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-----~d~g~----l~g~~~---------~~gv~v~~dl~~~l   98 (220)
                      ||+|+|+ |.||+.++..+... +++++ ++|++...     +.+..    +...+.         ...+.+++|++++.
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~-G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~   77 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARA-GYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV   77 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHT-TSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC
T ss_pred             CEEEEcC-CHHHHHHHHHHHhC-CCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh
Confidence            7999997 99999999988776 88887 45642100     01111    100000         01244567887764


Q ss_pred             hccccCCCccEEEEccCchh-----HHHHHHHHHHCCCcEEEeCCCCCHHH
Q 027650           99 GSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLET  144 (220)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~-----~~~~~~~al~~G~~vVigTtG~~~e~  144 (220)
                             ++|+||++.+-+.     .+..+...+.....+.+-|.+++..+
T Consensus        78 -------~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~  121 (180)
T PF02737_consen   78 -------DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE  121 (180)
T ss_dssp             -------TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH
T ss_pred             -------hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH
Confidence                   6899998765332     23333333445555555566777654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.48  E-value=0.039  Score=50.96  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=26.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+.||+|+|+.|.||+.+++.+... +.++.+ +|+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~-G~~V~~-~d~  130 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLS-GYQVRI-LEQ  130 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHC-CCeEEE-eCC
Confidence            5679999996699999999999874 666554 444

>PLN00016 RNA-binding protein; Provisional

Probab=96.47  E-value=0.016  Score=52.84  Aligned_cols=96  Identities=19%  Similarity=0.162  Sum_probs=57.3

Q ss_pred             CCCceEEEE----cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch-----hhhhcCCCCCCccc-cCCHHH---HHh
Q 027650           33 QSNIKVIIN----GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI-----GMVCDMEQPLEIPV-MSDLTM---VLG   99 (220)
Q Consensus        33 ~~~ikV~V~----Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~-----g~l~g~~~~~gv~v-~~dl~~---~l~   99 (220)
                      .+++||.|+    |++|.+|+.+++.+.+. +.++.++..........     ..+..+. ..++.+ ..|+.+   ++.
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~-G~~V~~l~R~~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~~~~  127 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKA-GHEVTLFTRGKEPSQKMKKEPFSRFSELS-SAGVKTVWGDPADVKSKVA  127 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHC-CCEEEEEecCCcchhhhccCchhhhhHhh-hcCceEEEecHHHHHhhhc
Confidence            345789999    99999999999998874 78998877542211000     0000000 112332 335443   443


Q ss_pred             ccccCCCccEEEEccCc--hhHHHHHHHHHHCCCc-EE
Q 027650          100 SISQSKARAVVIDFTDA--STVYDNVKQATAFGMR-SV  134 (220)
Q Consensus       100 ~~~~~~~~DVVIDfT~p--~~~~~~~~~al~~G~~-vV  134 (220)
                          ..++|+||++...  ......+.+|.+.|+. +|
T Consensus       128 ----~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V  161 (378)
T PLN00016        128 ----GAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL  161 (378)
T ss_pred             ----cCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence                1479999987643  3345566777778874 54

>PRK08328 hypothetical protein; Provisional

Probab=96.47  E-value=0.023  Score=49.02  Aligned_cols=94  Identities=23%  Similarity=0.274  Sum_probs=55.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC------------Ccchhh----------hhcCCCCCCccc--
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------GEDIGM----------VCDMEQPLEIPV--   90 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~------------g~d~g~----------l~g~~~~~gv~v--   90 (220)
                      ..||+|+|+ |..|..+++.+... ++.=..++|.+..            -.|+|.          +...  ..++.+  
T Consensus        27 ~~~VlIiG~-GGlGs~ia~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~--np~v~v~~  102 (231)
T PRK08328         27 KAKVAVVGV-GGLGSPVAYYLAAA-GVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF--NSDIKIET  102 (231)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHc-CCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh--CCCCEEEE
Confidence            358999998 99999999998764 7665667774210            011111          0000  011221  


Q ss_pred             c------CCHHHHHhccccCCCccEEEEccCc-hhHHHHHHHHHHCCCcEEEeCC
Q 027650           91 M------SDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        91 ~------~dl~~~l~~~~~~~~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTt  138 (220)
                      +      .++++++.      ++|+|||++.. +.-...-..|.++|+|+|.|-+
T Consensus       103 ~~~~~~~~~~~~~l~------~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~  151 (231)
T PRK08328        103 FVGRLSEENIDEVLK------GVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAV  151 (231)
T ss_pred             EeccCCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence            1      23344553      68888887643 3333444668888888887654

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.47  E-value=0.043  Score=47.04  Aligned_cols=33  Identities=30%  Similarity=0.502  Sum_probs=27.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..||+|+|+ |.+|..+++.+... ++.-..++|.
T Consensus        21 ~~~VlivG~-GglGs~va~~La~~-Gvg~i~lvD~   53 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAAA-GVGKLGLVDD   53 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHc-CCCEEEEEcC
Confidence            459999998 99999999998764 7777778885

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02427 UDP-apiose/xylose synthase

Probab=96.43  E-value=0.016  Score=52.85  Aligned_cols=36  Identities=17%  Similarity=0.119  Sum_probs=30.2

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      +..+|||.|.|++|-+|+.+++.+.+..+.+++++.
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~   46 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD   46 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence            345679999999999999999999886568888764

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.42  E-value=0.039  Score=48.32  Aligned_cols=95  Identities=16%  Similarity=0.167  Sum_probs=53.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC---CCCCC--ccccCCHHHHHhccccCCCcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM---EQPLE--IPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~--g~---~~~~g--v~v~~dl~~~l~~~~~~~~~D  108 (220)
                      |||+|+|+ |.||..++..+.+. +.++..+..+.   .....+.  |.   .....  +...++.+++ .      ++|
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~-g~~V~~~~r~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~------~~d   68 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQA-GHDVTLVARRG---AHLDALNENGLRLEDGEITVPVLAADDPAEL-G------PQD   68 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhC-CCeEEEEECCh---HHHHHHHHcCCcccCCceeecccCCCChhHc-C------CCC
Confidence            58999997 99999999988764 66765543311   1111111  11   00000  1224455544 3      799


Q ss_pred             EEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCH
Q 027650          109 VVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQL  142 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~  142 (220)
                      +||.++.+..+.+.+...   +..+..+|+-..|+..
T Consensus        69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~  105 (304)
T PRK06522         69 LVILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGH  105 (304)
T ss_pred             EEEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCc
Confidence            999777665554444433   3345567766668763

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=96.40  E-value=0.019  Score=50.33  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=27.9

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      |.|.|++|-+|+.+++.+.+. +.++++++|+.
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~-g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDK-GITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhC-CCceEEEecCC
Confidence            789999999999999999875 78888888864

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=96.40  E-value=0.021  Score=49.35  Aligned_cols=59  Identities=20%  Similarity=0.303  Sum_probs=40.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      ||.|.|++|.+|+.+++.+.+. +.++.++..+.      +         ++.-.+++.+++..    .++|+||++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r~~------~---------d~~~~~~~~~~~~~----~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPE-GRVVVALTSSQ------L---------DLTDPEALERLLRA----IRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeCCcc------c---------CCCCHHHHHHHHHh----CCCCEEEECCc
Confidence            6899999999999999998874 78887654321      1         11112345566653    36799998763

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.39  E-value=0.011  Score=53.71  Aligned_cols=115  Identities=13%  Similarity=0.106  Sum_probs=67.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEE---EEEec-CCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVA---GAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv---g~vd~-~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      .++|+| ||||..|+.+.+.+.+. ++.+-   -+-.. ...|+.+. +-|    ..+.+- ++++..-     .++|++
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Leer-~fpv~~l~l~~s~~~s~gk~i~-f~g----~~~~V~-~l~~~~f-----~~vDia   69 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQS-DLEIEQISIVEIEPFGEEQGIR-FNN----KAVEQI-APEEVEW-----ADFNYV   69 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHhc-CCchhheeecccccccCCCEEE-ECC----EEEEEE-ECCccCc-----ccCCEE
Confidence            479999 99999999999987653 44322   22222 22343321 111    122222 2222211     279998


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCCCC-------------CHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHI-------------QLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTtG~-------------~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      + |+..+...+....+.++|..||--+..|             +++..+.+.    +  ..++-.||=|.-.
T Consensus        70 ~-fag~~~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~----~--~~IIanPNCsTi~  134 (322)
T PRK06901         70 F-FAGKMAQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAELR----Q--RNIVSLPDPQVSQ  134 (322)
T ss_pred             E-EcCHHHHHHHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcCc----C--CCEEECCcHHHHH
Confidence            8 7666666788889999998888655433             455433332    2  2477789955544

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.39  E-value=0.023  Score=50.15  Aligned_cols=31  Identities=29%  Similarity=0.312  Sum_probs=25.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||+|+|+ |.||..++..+... +++++ ++|+
T Consensus         5 ~kI~vIGa-G~mG~~iA~~la~~-G~~V~-l~d~   35 (292)
T PRK07530          5 KKVGVIGA-GQMGNGIAHVCALA-GYDVL-LNDV   35 (292)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHC-CCeEE-EEeC
Confidence            58999997 99999999988764 77776 4665

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.37  E-value=0.049  Score=50.96  Aligned_cols=32  Identities=22%  Similarity=0.243  Sum_probs=26.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ++||+|+|. |.||..++..+.+. +.++.+ +|+
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~-G~~V~~-~D~   34 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASR-QKQVIG-VDI   34 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhC-CCEEEE-EeC
Confidence            579999996 99999999988764 788775 564

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.36  E-value=0.094  Score=49.94  Aligned_cols=136  Identities=22%  Similarity=0.194  Sum_probs=74.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC--CHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .||+|+|. |+.|...++.+.. .+.++++ +|...  .....+.    ..|+.+..  ...+.+.      ++|+||..
T Consensus        13 ~~v~V~G~-G~sG~aa~~~L~~-~G~~v~~-~D~~~--~~~~~l~----~~g~~~~~~~~~~~~l~------~~D~VV~S   77 (488)
T PRK03369         13 APVLVAGA-GVTGRAVLAALTR-FGARPTV-CDDDP--DALRPHA----ERGVATVSTSDAVQQIA------DYALVVTS   77 (488)
T ss_pred             CeEEEEcC-CHHHHHHHHHHHH-CCCEEEE-EcCCH--HHHHHHH----hCCCEEEcCcchHhHhh------cCCEEEEC
Confidence            48999996 9999999987664 5788776 77431  1122221    23544432  2333343      68988854


Q ss_pred             c-CchhHHHHHHHHHHCCCcEE---------------------EeCCCCC-H-HHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          114 T-DASTVYDNVKQATAFGMRSV---------------------VYVPHIQ-L-ETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       114 T-~p~~~~~~~~~al~~G~~vV---------------------igTtG~~-~-e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      . .|.. .+.+..|.+.|++++                     ||-||-+ + -...-|..+-+..|.+.....|  +|.
T Consensus        78 pGi~~~-~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~  154 (488)
T PRK03369         78 PGFRPT-APVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGS  154 (488)
T ss_pred             CCCCCC-CHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--Cch
Confidence            3 2332 234555555544333                     4444432 1 1223345555556667676677  566


Q ss_pred             HHHHHHHHHhcCCCCCeEEEeccCC
Q 027650          170 ILLQQAAISASFHYKNVEIVESRPN  194 (220)
Q Consensus       170 ~ll~~~a~~~~~~~~diEIiE~HH~  194 (220)
                      .++..+    . ...|+-|+|.-..
T Consensus       155 p~~~~~----~-~~~~~~VlE~ss~  174 (488)
T PRK03369        155 PVLDVL----D-EPAELLAVELSSF  174 (488)
T ss_pred             HHHHhc----c-CCCCEEEEECChH
Confidence            554322    2 2356777776543

>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Probab=96.35  E-value=0.041  Score=51.22  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~   69 (220)
                      |.||+|.|+||-+|+...+.+.++|+ ++++++...
T Consensus         1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~   36 (389)
T TIGR00243         1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAG   36 (389)
T ss_pred             CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcC
Confidence            46999999999999999999988766 999999873

1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.

>KOG2742 consensus Predicted oxidoreductase [General function prediction only]

Probab=96.34  E-value=0.0052  Score=56.11  Aligned_cols=155  Identities=15%  Similarity=0.118  Sum_probs=96.4

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEccCc
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFTDA  116 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (220)
                      |+|.| ||-.-+..+-.+.+.+ +++-+++.+...  .+.+.+   ....++. ++.+++.+..    .+.|.|...-+|
T Consensus         5 v~v~G-Tg~~arv~iP~l~e~~-f~v~A~w~Rt~~--ea~a~a---a~~~v~~~t~~~deiLl~----~~vdlv~i~lpp   73 (367)
T KOG2742|consen    5 VGVFG-TGIFARVLIPLLKEEG-FEVKAIWGRTKT--EAKAKA---AEMNVRKYTSRLDEILLD----QDVDLVCISLPP   73 (367)
T ss_pred             eeEec-cChhHhhhhhhhhhcc-chHhhhhchhhh--HHHHhh---hccchhhccccchhhhcc----CCcceeEeccCC
Confidence            99999 5988888877777665 999998877321  111111   1234454 4588998864    567765546678


Q ss_pred             hhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc-HHH-HHHHHHHHHhcCCCCCeEEEecc-C
Q 027650          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS-IGS-ILLQQAAISASFHYKNVEIVESR-P  193 (220)
Q Consensus       117 ~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS-~Gv-~ll~~~a~~~~~~~~diEIiE~H-H  193 (220)
                      ..+.+.+..++..|+|||+++|..+.++...+.++++......++..|+- ++. .-++++.+..  +..++-..|.| +
T Consensus        74 ~~~~eI~~kal~~Gk~Vvcek~a~~~d~~k~~~~~~~s~~L~~lv~~~lrflp~f~~~k~~ie~i--~~g~vv~~~~~v~  151 (367)
T KOG2742|consen   74 PLHAEIVVKALGIGKHVVCEKPATNLDAAKMVVALAYSPKLMSLVGHVLRFLPAFVTAKELIEEI--YVGEVVRCDVRVD  151 (367)
T ss_pred             ccceeeeeccccCCceEEeccCCcchhhhhhHHHHhhchhHHHHhhhhhhhhHHHHHHHHHHHhc--cCCCeeeeeeeee
Confidence            88899999999999999999999777888888888766333322222210 111 0022222222  12244455555 6


Q ss_pred             CCCCCCCchhhH
Q 027650          194 NARMQLKSPTTS  205 (220)
Q Consensus       194 ~~K~DaPSGTA~  205 (220)
                      +.+.=.|||+-+
T Consensus       152 ~~~l~~k~~~W~  163 (367)
T KOG2742|consen  152 RGRLFRKSYNWK  163 (367)
T ss_pred             cceecccCCccc
Confidence            666666666543

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.33  E-value=0.077  Score=52.79  Aligned_cols=103  Identities=17%  Similarity=0.156  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCcc--ccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .||+|+|+ |.||..+++.+.+.. ..++. ++|++.  .......    ..|+.  ...++++++.      ++|+||.
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~-~~d~~~--~~~~~a~----~~g~~~~~~~~~~~~~~------~aDvVil   69 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVV-AVDRRA--KSLELAV----SLGVIDRGEEDLAEAVS------GADVIVL   69 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEE-EEECCh--hHHHHHH----HCCCCCcccCCHHHHhc------CCCEEEE
Confidence            58999996 999999999987642 23544 467642  1122211    12332  3456777775      7999997


Q ss_pred             ccCchhHHHHHHHHHH--CCCcEEEeCCCCCHHHHHHHHHHh
Q 027650          113 FTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFC  152 (220)
Q Consensus       113 fT~p~~~~~~~~~al~--~G~~vVigTtG~~~e~~~~L~~aA  152 (220)
                      +++|....+.+.....  ..-.+|+-..+....-.+.+++..
T Consensus        70 avp~~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~  111 (735)
T PRK14806         70 AVPVLAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVF  111 (735)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhc
Confidence            7777665555554432  122355544555544455566553

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.32  E-value=0.0052  Score=56.35  Aligned_cols=32  Identities=31%  Similarity=0.348  Sum_probs=29.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      +||+|+|. ||+||.+.|++.+.+++|+|++-|
T Consensus         3 ~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd   34 (342)
T PTZ00353          3 ITVGINGF-GPVGKAVLFASLTDPLVTVVAVND   34 (342)
T ss_pred             eEEEEECC-ChHHHHHHHHHHhcCCcEEEEecC
Confidence            79999997 999999999988788999999977

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.31  E-value=0.036  Score=43.38  Aligned_cols=120  Identities=14%  Similarity=0.142  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh-hcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV-CDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l-~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .||+|+|+ |.+|..+++.+... ++.=.-++|.+.. ..++... +......|-+-..-+.+.+.+    ..|++=|..
T Consensus         3 ~~v~iiG~-G~vGs~va~~L~~~-Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~----~np~~~v~~   76 (135)
T PF00899_consen    3 KRVLIIGA-GGVGSEVAKNLARS-GVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQE----INPDVEVEA   76 (135)
T ss_dssp             -EEEEEST-SHHHHHHHHHHHHH-TTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHH----HSTTSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHHh-CCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHH----hcCceeeee
Confidence            58999997 99999999998764 7766668886421 1122210 000001122222223333332    244443422


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                      -......++....+ .+..+|+.++.- .+....|.+++++.++|++.+.
T Consensus        77 ~~~~~~~~~~~~~~-~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~  124 (135)
T PF00899_consen   77 IPEKIDEENIEELL-KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAG  124 (135)
T ss_dssp             EESHCSHHHHHHHH-HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred             eecccccccccccc-cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEE
Confidence            21122234444444 466777765433 4445667888888888877653

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.30  E-value=0.042  Score=46.38  Aligned_cols=122  Identities=15%  Similarity=0.159  Sum_probs=61.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhh--hhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGM--VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~--l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..||.|+|+ |.+|..+++.+... ++.=+-++|++.. -.++..  +... +..|-+-.+.+.+.+.+    -++++-|
T Consensus        21 ~~~VlviG~-GglGs~ia~~La~~-Gv~~i~lvD~d~ve~sNL~Rq~l~~~-~diG~~Ka~~~~~~l~~----~np~v~i   93 (202)
T TIGR02356        21 NSHVLIIGA-GGLGSPAALYLAGA-GVGTIVIVDDDHVDLSNLQRQILFTE-EDVGRPKVEVAAQRLRE----LNSDIQV   93 (202)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHc-CCCeEEEecCCEEcccchhhhhccCh-hhCCChHHHHHHHHHHH----hCCCCEE
Confidence            458999997 99999999998765 6654556776421 111111  0000 01111111112222221    2455444


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      +.-......+++...+ .+..+|+.++.- .+....|.++|++.++|++.+...
T Consensus        94 ~~~~~~i~~~~~~~~~-~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~  145 (202)
T TIGR02356        94 TALKERVTAENLELLI-NNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVV  145 (202)
T ss_pred             EEehhcCCHHHHHHHH-hCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEec
Confidence            3211111123333333 356677766532 344556777778888887765543

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.29  E-value=0.081  Score=48.42  Aligned_cols=102  Identities=15%  Similarity=0.167  Sum_probs=57.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc--ccCCHHHHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ||+|+|. |.||..+++.+... +.++. +++++..........+    .++.  ..+++++++.      ++|+||-++
T Consensus         2 ~I~iIG~-GliG~siA~~L~~~-G~~v~-i~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~------~aDlVilav   68 (359)
T PRK06545          2 TVLIVGL-GLIGGSLALAIKAA-GPDVF-IIGYDPSAAQLARALG----FGVIDELAADLQRAAA------EADLIVLAV   68 (359)
T ss_pred             eEEEEEe-CHHHHHHHHHHHhc-CCCeE-EEEeCCCHHHHHHHhc----CCCCcccccCHHHHhc------CCCEEEEeC
Confidence            7999996 99999999998764 44443 3443211111111111    2221  2456777764      799999777


Q ss_pred             CchhHHHHHHHHHHC--C-CcEEEeCCCCCHHHHHHHHHH
Q 027650          115 DASTVYDNVKQATAF--G-MRSVVYVPHIQLETVSALSAF  151 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G-~~vVigTtG~~~e~~~~L~~a  151 (220)
                      +|....+.+......  . -.+|+-..+...+..+.+.+.
T Consensus        69 P~~~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~  108 (359)
T PRK06545         69 PVDATAALLAELADLELKPGVIVTDVGSVKGAILAEAEAL  108 (359)
T ss_pred             CHHHHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh
Confidence            777666666555431  1 134433344555545555554

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.27  E-value=0.015  Score=51.34  Aligned_cols=31  Identities=16%  Similarity=0.347  Sum_probs=25.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      -||+|+|+ |.||..++..+... +++++ ++|+
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~-G~~V~-l~d~   34 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFART-GYDVT-IVDV   34 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhc-CCeEE-EEeC
Confidence            48999997 99999999988764 77766 4664

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.26  E-value=0.02  Score=50.68  Aligned_cols=32  Identities=34%  Similarity=0.396  Sum_probs=26.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +.||+|+|+ |.||..++..+... +++++ ++|+
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~~-G~~V~-~~d~   35 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAAA-GMDVW-LLDS   35 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHhc-CCeEE-EEeC
Confidence            458999997 99999999998765 77776 4565

>PLN02477 glutamate dehydrogenase

Probab=96.26  E-value=0.046  Score=51.31  Aligned_cols=115  Identities=17%  Similarity=0.178  Sum_probs=73.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCC-------CccccCCHHHHHhccc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL-------EIPVMSDLTMVLGSIS  102 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~-------gv~v~~dl~~~l~~~~  102 (220)
                      ..||+|.|. |++|+.+++.+.+ .+..||++.|.     +..|-|+.++.......       +.. .-+.++++.   
T Consensus       206 g~~VaIqGf-GnVG~~~A~~L~e-~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~-~i~~~e~l~---  279 (410)
T PLN02477        206 GQTFVIQGF-GNVGSWAAQLIHE-KGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGD-PIDPDDILV---  279 (410)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-cCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccce-EecCcccee---
Confidence            369999996 9999999998866 58999999995     34577776654211000       111 124455665   


Q ss_pred             cCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                        .++||+|=+...... .+++.   +-+..+|+|-.  .++++-.+.|    +++  .+++.|.|.
T Consensus       280 --~~~DvliP~Al~~~I~~~na~---~i~ak~I~egAN~p~t~ea~~~L----~~r--GI~~~PD~~  335 (410)
T PLN02477        280 --EPCDVLIPAALGGVINKENAA---DVKAKFIVEAANHPTDPEADEIL----RKK--GVVVLPDIY  335 (410)
T ss_pred             --ccccEEeeccccccCCHhHHH---HcCCcEEEeCCCCCCCHHHHHHH----HHC--CcEEEChHH
Confidence              489999977654444 44554   35889999876  3566543333    343  455556543

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.21  E-value=0.016  Score=49.08  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=23.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv   64 (220)
                      |||+|+|++|+||+.+++.+.+. |+++.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~-g~~v~   28 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDN-GLGVY   28 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhC-CCEEE
Confidence            58999999999999999988764 77653

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.19  E-value=0.062  Score=45.28  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=28.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ..||.|+|+ |.+|..+++.+.. .++.=+.++|.+
T Consensus        19 ~s~VlviG~-gglGsevak~L~~-~GVg~i~lvD~d   52 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLVL-AGIDSITIVDHR   52 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEEECC
Confidence            358999998 8899999999875 588777788864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PLN02778 3,5-epimerase/4-reductase

Probab=96.18  E-value=0.054  Score=47.98  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=28.1

Q ss_pred             CCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEE
Q 027650           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAG   65 (220)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg   65 (220)
                      .|....|||.|.|++|-+|+.+++.+.+. +.+++.
T Consensus         4 ~~~~~~~kiLVtG~tGfiG~~l~~~L~~~-g~~V~~   38 (298)
T PLN02778          4 TAGSATLKFLIYGKTGWIGGLLGKLCQEQ-GIDFHY   38 (298)
T ss_pred             CCCCCCCeEEEECCCCHHHHHHHHHHHhC-CCEEEE
Confidence            34455579999999999999999998764 667653

>PRK06091 membrane protein FdrA; Validated

Probab=96.17  E-value=0.028  Score=54.55  Aligned_cols=75  Identities=8%  Similarity=0.101  Sum_probs=62.7

Q ss_pred             CccccCCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650           87 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus        87 gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      .++.+.++.++.+.+   .++|+++.+.++..+.+.++.|++.|+++||=+.|+..+..++|.++|+++|+.+ +=||-
T Consensus       101 ~~~~~~t~~~a~~~l---pe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~Glrv-mGPNC  175 (555)
T PRK06091        101 SLTQVRRWDSACQKL---PDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLLV-MGPDC  175 (555)
T ss_pred             CCcccccHHHHHhcC---CCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCEE-ECCCC
Confidence            456778888887642   4679888788888889999999999999999888999888899999999988765 55886

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.16  E-value=0.031  Score=54.28  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=34.7

Q ss_pred             CCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      +.....|+.|+|| |.-|..+++.+...+.+..||++|.+
T Consensus       112 ~~~~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd  150 (588)
T COG1086         112 QKDNRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDD  150 (588)
T ss_pred             cccCCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCC
Confidence            4455689999998 99999999999999999999999964

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.15  E-value=0.046  Score=49.00  Aligned_cols=98  Identities=16%  Similarity=0.192  Sum_probs=54.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC--CC---------CCccccCCHHHHHhccc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--QP---------LEIPVMSDLTMVLGSIS  102 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~--~~---------~gv~v~~dl~~~l~~~~  102 (220)
                      +|+||+|+|+ |.||..++..+.+. +.++.. +++...-+.+.+ .|..  ..         ..+...++.+ .+    
T Consensus         1 ~~mkI~IiG~-G~mG~~~A~~L~~~-G~~V~~-~~r~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~----   71 (341)
T PRK08229          1 MMARICVLGA-GSIGCYLGGRLAAA-GADVTL-IGRARIGDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDPA-AL----   71 (341)
T ss_pred             CCceEEEECC-CHHHHHHHHHHHhc-CCcEEE-EecHHHHHHHHh-cCceeecCCCcceecccceeEeccChh-hc----
Confidence            4789999997 99999999988765 677765 444210010100 0100  00         0122344553 33    


Q ss_pred             cCCCccEEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCH
Q 027650          103 QSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQL  142 (220)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~  142 (220)
                        .++|+||.++.+....+.+...   +..+..+|.-+.|+..
T Consensus        72 --~~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~  112 (341)
T PRK08229         72 --ATADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRN  112 (341)
T ss_pred             --cCCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence              2799999776655444444333   3344545555568764

>PLN00106 malate dehydrogenase

Probab=96.14  E-value=0.032  Score=50.72  Aligned_cols=49  Identities=18%  Similarity=0.219  Sum_probs=33.6

Q ss_pred             CCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           21 AKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        21 ~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ++|.-.|-+.--....||+|+|++|++|..++-.+...+-..=.-++|.
T Consensus         4 ~~~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di   52 (323)
T PLN00106          4 ASSLRACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDI   52 (323)
T ss_pred             hhhhhccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEec
Confidence            3444456544444446999999889999999998876554433346675

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.12  E-value=0.031  Score=52.67  Aligned_cols=103  Identities=13%  Similarity=0.080  Sum_probs=60.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|+ |.+|+.+++.+... +++++ ++|.+.. + ..+..    ..|..+ .++++++.      .+|+||++
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~-Ga~Vi-V~d~dp~-r-a~~A~----~~G~~v-~~l~eal~------~aDVVI~a  274 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGL-GARVI-VTEVDPI-C-ALQAA----MDGFRV-MTMEEAAE------LGDIFVTA  274 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCEEE-EEcCCch-h-hHHHH----hcCCEe-cCHHHHHh------CCCEEEEC
Confidence            3458999997 99999999988765 77754 4664321 1 11111    123333 36788775      79999998


Q ss_pred             cCchhHH-HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHh
Q 027650          114 TDASTVY-DNVKQATAFGMRSVVYVPHIQLETVSALSAFC  152 (220)
Q Consensus       114 T~p~~~~-~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA  152 (220)
                      |...... ......++.|.-++...-.-.+-+.+.|++.+
T Consensus       275 TG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~  314 (425)
T PRK05476        275 TGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELA  314 (425)
T ss_pred             CCCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcC
Confidence            8544443 34445556665554322211233445566553

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=96.12  E-value=0.039  Score=48.68  Aligned_cols=86  Identities=17%  Similarity=0.269  Sum_probs=51.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||.|.|++|-+|+.+++.+.+. + ++++ +++...     .+.     .++.-.+.+.++++.    .++|+||.+..
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~-~~~~~~-----~~~-----~Dl~d~~~~~~~~~~----~~~D~Vih~Aa   63 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPL-G-NLIA-LDVHST-----DYC-----GDFSNPEGVAETVRK----IRPDVIVNAAA   63 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhcc-C-CEEE-eccccc-----ccc-----CCCCCHHHHHHHHHh----cCCCEEEECCc
Confidence            58999999999999999988765 4 5554 443210     000     011112334455542    36999998742


Q ss_pred             ----------chh--------HHHHHHHHHHCCCcEEEeCC
Q 027650          116 ----------AST--------VYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       116 ----------p~~--------~~~~~~~al~~G~~vVigTt  138 (220)
                                |+.        ....++.|.+.|+++|.-.|
T Consensus        64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss  104 (299)
T PRK09987         64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYST  104 (299)
T ss_pred             cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcc
Confidence                      111        22355677788888875443

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.11  E-value=0.076  Score=50.46  Aligned_cols=118  Identities=14%  Similarity=0.183  Sum_probs=76.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCC-----------C-CCCccccCCH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDME-----------Q-PLEIPVMSDL   94 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l---~g~~-----------~-~~gv~v~~dl   94 (220)
                      ..||+|-|. |++|+..++.+.+ .+.++|++.|+     +..|-|..++   ....           + ..+.... +.
T Consensus       237 Gk~VaVqG~-GnVg~~aa~~L~e-~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~-~~  313 (454)
T PTZ00079        237 GKTVVVSGS-GNVAQYAVEKLLQ-LGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV-PG  313 (454)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe-CC
Confidence            469999996 9999999999876 59999999996     3456665544   1100           0 0022211 23


Q ss_pred             HHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      ++++.     .++||++=+...... .+++....+.+..+|+|-- + .+++-.+.|    +++  .+++.|.+.
T Consensus       314 ~~~~~-----~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L----~~~--GI~~~PD~~  377 (454)
T PTZ00079        314 KKPWE-----VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLF----KKN--GVIFCPGKA  377 (454)
T ss_pred             cCccc-----CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH----HHC--CcEEEChhh
Confidence            44444     379999877665544 6788888899999999876 2 455433223    333  456656543

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.11  E-value=0.042  Score=52.07  Aligned_cols=96  Identities=11%  Similarity=0.113  Sum_probs=67.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhh---hcCCC-----------CC-CccccCCH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMV---CDMEQ-----------PL-EIPVMSDL   94 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l---~g~~~-----------~~-gv~v~~dl   94 (220)
                      ..||+|-|. |++|+..++.+.+ .+.+||++.|+     +..|-|..++   .....           .+ +.... +.
T Consensus       228 g~~vaIQGf-GnVG~~aA~~L~e-~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~  304 (445)
T PRK14030        228 GKTVAISGF-GNVAWGAATKATE-LGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AG  304 (445)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CC
Confidence            369999996 9999999999876 59999999884     3446665542   11100           11 22222 34


Q ss_pred             HHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                      ++++.     .++||+|=+...... .+++....+++..+|+|--
T Consensus       305 ~~~~~-----~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgA  344 (445)
T PRK14030        305 KKPWE-----QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVS  344 (445)
T ss_pred             cccee-----ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCC
Confidence            55665     489999977765444 6888888899999999876

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.10  E-value=0.043  Score=50.12  Aligned_cols=35  Identities=14%  Similarity=0.123  Sum_probs=30.0

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      +..+||.|.|++|.+|+.+++.+.+. +.++.++..
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~-G~~V~~v~r   53 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAE-GHYIIASDW   53 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhC-CCEEEEEEe
Confidence            45689999999999999999999874 789888653

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.08  E-value=0.047  Score=49.54  Aligned_cols=71  Identities=17%  Similarity=0.151  Sum_probs=42.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecC-----CCCcchhhhhcC--CCCCCccccCCHHHHHhcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSH-----SVGEDIGMVCDM--EQPLEIPVMSDLTMVLGSI  101 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLvg~vd~~-----~~g~d~g~l~g~--~~~~gv~v~~dl~~~l~~~  101 (220)
                      .+||+|+|++|++|+.++..+...+      +.+|+. +|..     ..|... ++...  .....+.+..++.+.++  
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L-~D~~~~~~~~~g~~~-Dl~d~~~~~~~~~~~~~~~~~~l~--   77 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHL-LDIPPALKALEGVVM-ELQDCAFPLLKSVVATTDPEEAFK--   77 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEE-EEcCCccccccceee-ehhhccccccCCceecCCHHHHhC--
Confidence            5799999999999999999887643      237765 4541     122111 11110  00113344567666665  


Q ss_pred             ccCCCccEEEEc
Q 027650          102 SQSKARAVVIDF  113 (220)
Q Consensus       102 ~~~~~~DVVIDf  113 (220)
                          ++|+||..
T Consensus        78 ----~aDiVI~t   85 (325)
T cd01336          78 ----DVDVAILV   85 (325)
T ss_pred             ----CCCEEEEe
Confidence                89998854

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.08  E-value=0.061  Score=44.38  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=25.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ||+|+|+ |.||..+++.+.. .++.=+.++|.+
T Consensus         1 ~VlViG~-GglGs~ia~~La~-~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLAR-SGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence            6999998 9999999998876 477655677853

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.06  E-value=0.012  Score=48.52  Aligned_cols=65  Identities=23%  Similarity=0.200  Sum_probs=42.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|+ |++|+.+++.+... ++++.+ +|+..  .+.....    ..++ -+.++++++.      .+|+|+..
T Consensus        35 ~g~tvgIiG~-G~IG~~vA~~l~~f-G~~V~~-~d~~~--~~~~~~~----~~~~-~~~~l~ell~------~aDiv~~~   98 (178)
T PF02826_consen   35 RGKTVGIIGY-GRIGRAVARRLKAF-GMRVIG-YDRSP--KPEEGAD----EFGV-EYVSLDELLA------QADIVSLH   98 (178)
T ss_dssp             TTSEEEEEST-SHHHHHHHHHHHHT-T-EEEE-EESSC--HHHHHHH----HTTE-EESSHHHHHH------H-SEEEE-
T ss_pred             CCCEEEEEEE-cCCcCeEeeeeecC-CceeEE-ecccC--Chhhhcc----cccc-eeeehhhhcc------hhhhhhhh
Confidence            3469999996 99999999998865 888886 45532  1111011    1233 3679999997      69998854


Q ss_pred             c
Q 027650          114 T  114 (220)
Q Consensus       114 T  114 (220)
                      .
T Consensus        99 ~   99 (178)
T PF02826_consen   99 L   99 (178)
T ss_dssp             S
T ss_pred             h
Confidence            3

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.03  E-value=0.012  Score=46.38  Aligned_cols=72  Identities=21%  Similarity=0.269  Sum_probs=46.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-C-CCCCccccCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-E-QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~-~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ...||.|+|+ |+||+.++..+... +++=+-++.++.  ..+.++... + ....+.-++++.+.+.      ++|+||
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~-g~~~i~i~nRt~--~ra~~l~~~~~~~~~~~~~~~~~~~~~~------~~DivI   80 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAAL-GAKEITIVNRTP--ERAEALAEEFGGVNIEAIPLEDLEEALQ------EADIVI   80 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHT-TSSEEEEEESSH--HHHHHHHHHHTGCSEEEEEGGGHCHHHH------TESEEE
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHHHHHHcCccccceeeHHHHHHHHh------hCCeEE
Confidence            3458999997 99999999999876 777556676642  223333211 0 0112233667777775      799999


Q ss_pred             EccC
Q 027650          112 DFTD  115 (220)
Q Consensus       112 DfT~  115 (220)
                      ..|+
T Consensus        81 ~aT~   84 (135)
T PF01488_consen   81 NATP   84 (135)
T ss_dssp             E-SS
T ss_pred             EecC
Confidence            6664

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.00  E-value=0.014  Score=52.81  Aligned_cols=91  Identities=18%  Similarity=0.136  Sum_probs=59.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCc--cccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..+++|+|+ |.+|+.+++.+....+++-+.++++..  ..+..+.. +....++  ..++++++++.      ++|+||
T Consensus       129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~--~~a~~~a~~~~~~~g~~v~~~~~~~~av~------~aDiVv  199 (326)
T TIGR02992       129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDS--AKAEALALQLSSLLGIDVTAATDPRAAMS------GADIIV  199 (326)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhhcCceEEEeCCHHHHhc------cCCEEE
Confidence            358999997 999999999998667888888888742  12222221 0012233  34788999885      799999


Q ss_pred             EccCchhHHHHH-HHHHHCCCcEE-Ee
Q 027650          112 DFTDASTVYDNV-KQATAFGMRSV-VY  136 (220)
Q Consensus       112 DfT~p~~~~~~~-~~al~~G~~vV-ig  136 (220)
                      -+|+...  +.+ ...++.|.++. +|
T Consensus       200 taT~s~~--p~i~~~~l~~g~~i~~vg  224 (326)
T TIGR02992       200 TTTPSET--PILHAEWLEPGQHVTAMG  224 (326)
T ss_pred             EecCCCC--cEecHHHcCCCcEEEeeC
Confidence            6664322  222 34578888876 44

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK05865 hypothetical protein; Provisional

Probab=96.00  E-value=0.063  Score=54.76  Aligned_cols=109  Identities=14%  Similarity=0.182  Sum_probs=61.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |||.|.|++|.+|+.+++.+.+. +.+++++..+.. .. ...  +.. -..++.-.+++.+++.      ++|+||.+.
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~-G~~Vv~l~R~~~-~~-~~~--~v~~v~gDL~D~~~l~~al~------~vD~VVHlA   69 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQ-GHEVVGIARHRP-DS-WPS--SADFIAADIRDATAVESAMT------GADVVAHCA   69 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCch-hh-ccc--CceEEEeeCCCHHHHHHHHh------CCCEEEECC
Confidence            58999999999999999988764 788887654311 00 000  000 0001111223444554      699999876


Q ss_pred             Cch---------hHHHHHHHHHHCCCc-EE-EeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          115 DAS---------TVYDNVKQATAFGMR-SV-VYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       115 ~p~---------~~~~~~~~al~~G~~-vV-igTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      ...         .....+..+.+.|+. +| +++..  +   ...++++++.+++++
T Consensus        70 a~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~--K---~aaE~ll~~~gl~~v  121 (854)
T PRK05865         70 WVRGRNDHINIDGTANVLKAMAETGTGRIVFTSSGH--Q---PRVEQMLADCGLEWV  121 (854)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHcCCCeEEEECCcH--H---HHHHHHHHHcCCCEE
Confidence            321         223445666777764 44 33322  2   334455555677665

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=95.94  E-value=0.044  Score=43.56  Aligned_cols=32  Identities=22%  Similarity=0.300  Sum_probs=29.1

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEec
Q 027650           38 VIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDS   69 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~   69 (220)
                      |+|.|+||-+|+...+.+.++| .++|+++...
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~   33 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAG   33 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcC
Confidence            6899999999999999999888 5999999874

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK14031 glutamate dehydrogenase; Provisional

Probab=95.91  E-value=0.063  Score=50.93  Aligned_cols=96  Identities=15%  Similarity=0.139  Sum_probs=63.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhh----------c----CCCCCCccccCCHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVC----------D----MEQPLEIPVMSDLT   95 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~----------g----~~~~~gv~v~~dl~   95 (220)
                      ..||+|.|. |++|...++.+.+ .+.+|+++.|.     +..|-|..++.          +    .....++... +.+
T Consensus       228 g~rVaVQGf-GNVG~~aA~~L~e-~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d  304 (444)
T PRK14031        228 GKVCLVSGS-GNVAQYTAEKVLE-LGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGA  304 (444)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCc
Confidence            369999996 9999999998876 69999999994     23455553332          0    0000122222 345


Q ss_pred             HHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                      +.+.     .++|++|=+...... .+++......|+.+|++--
T Consensus       305 ~~~~-----~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgA  343 (444)
T PRK14031        305 RPWG-----EKGDIALPSATQNELNGDDARQLVANGVIAVSEGA  343 (444)
T ss_pred             cccc-----CCCcEEeecccccccCHHHHHHHHhcCCeEEECCC
Confidence            5554     378988866654443 6788887788888888655

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=95.88  E-value=0.044  Score=51.55  Aligned_cols=30  Identities=20%  Similarity=0.328  Sum_probs=26.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      |||.|.|++|-+|+.+++.+.+. +.+++++
T Consensus       121 mkILVTGatGFIGs~Lv~~Ll~~-G~~V~~l  150 (436)
T PLN02166        121 LRIVVTGGAGFVGSHLVDKLIGR-GDEVIVI  150 (436)
T ss_pred             CEEEEECCccHHHHHHHHHHHHC-CCEEEEE
Confidence            79999999999999999998875 7888874

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.88  E-value=0.013  Score=52.99  Aligned_cols=89  Identities=17%  Similarity=0.205  Sum_probs=57.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCcc--ccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIP--VMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..+|+|+|+ |.+|+.++..+....+++-+.+++++.  ..+..+.. ....+++.  .++|+++++.      ++|+||
T Consensus       132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~--~~a~~l~~~~~~~~g~~v~~~~d~~~al~------~aDiVi  202 (330)
T PRK08291        132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDA--AKAEAYAADLRAELGIPVTVARDVHEAVA------GADIIV  202 (330)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHhhccCceEEEeCCHHHHHc------cCCEEE
Confidence            358999997 999999999888666788888888642  11222221 00122443  4789999886      799998


Q ss_pred             EccCchhHHHHHH-HHHHCCCcEE
Q 027650          112 DFTDASTVYDNVK-QATAFGMRSV  134 (220)
Q Consensus       112 DfT~p~~~~~~~~-~al~~G~~vV  134 (220)
                      -.|+.. . +.+. ..++.|.++.
T Consensus       203 ~aT~s~-~-p~i~~~~l~~g~~v~  224 (330)
T PRK08291        203 TTTPSE-E-PILKAEWLHPGLHVT  224 (330)
T ss_pred             EeeCCC-C-cEecHHHcCCCceEE
Confidence            555432 1 2232 2367787765

>PRK13243 glyoxylate reductase; Reviewed

Probab=95.87  E-value=0.05  Score=49.48  Aligned_cols=106  Identities=16%  Similarity=0.063  Sum_probs=60.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .-.+|+|+|. |+||+.+++.+... ++++. ++|+..... ...      ..++. +.++++++.      .+|+|+..
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~-~~~------~~~~~-~~~l~ell~------~aDiV~l~  211 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGF-GMRIL-YYSRTRKPE-AEK------ELGAE-YRPLEELLR------ESDFVSLH  211 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHC-CCEEE-EECCCCChh-hHH------HcCCE-ecCHHHHHh------hCCEEEEe
Confidence            3469999996 99999999998764 78876 567632111 111      12333 468999986      79998855


Q ss_pred             cCchh-HH----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCc
Q 027650          114 TDAST-VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (220)
Q Consensus       114 T~p~~-~~----~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v  157 (220)
                      .+... +.    +.....++.|.-+|--..|---++ +.|.++.+++.+
T Consensus       212 lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~-~aL~~aL~~g~i  259 (333)
T PRK13243        212 VPLTKETYHMINEERLKLMKPTAILVNTARGKVVDT-KALVKALKEGWI  259 (333)
T ss_pred             CCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCH-HHHHHHHHcCCe
Confidence            43211 11    222334455544443333432222 445555555433

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.86  E-value=0.063  Score=49.60  Aligned_cols=35  Identities=23%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .++||.|+|++|.+|+.+++.+.+. +.+++++..+
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~R~   93 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRR-GYNVVAVARE   93 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEEec
Confidence            4579999999999999999998764 7898887643

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.85  E-value=0.057  Score=49.10  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=59.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ..++|+|+|+ |+||+.+++.+.. -++++++ +|+... ..    .+     .+....++++++.      ++|+|+..
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~-~G~~V~~-~d~~~~-~~----~~-----~~~~~~~l~ell~------~aDiVil~  205 (330)
T PRK12480        145 KNMTVAIIGT-GRIGAATAKIYAG-FGATITA-YDAYPN-KD----LD-----FLTYKDSVKEAIK------DADIISLH  205 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHh-CCCEEEE-EeCChh-Hh----hh-----hhhccCCHHHHHh------cCCEEEEe
Confidence            3358999997 9999999998875 4888875 565321 00    00     1223468999986      79998854


Q ss_pred             cCchh-H----HHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCc
Q 027650          114 TDAST-V----YDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASM  157 (220)
Q Consensus       114 T~p~~-~----~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v  157 (220)
                      .+... +    .+.....++.|.-+| -+. |.--++ +.|.++-++..+
T Consensus       206 lP~t~~t~~li~~~~l~~mk~gavlI-N~aRG~~vd~-~aL~~aL~~g~i  253 (330)
T PRK12480        206 VPANKESYHLFDKAMFDHVKKGAILV-NAARGAVINT-PDLIAAVNDGTL  253 (330)
T ss_pred             CCCcHHHHHHHhHHHHhcCCCCcEEE-EcCCccccCH-HHHHHHHHcCCe
Confidence            43221 1    122233345565444 444 543333 345555555434

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.84  E-value=0.097  Score=51.16  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=27.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      -.|.|.|++|++|+.+++.+.+. +.+++++..
T Consensus        81 KvVLVTGATGgIG~aLAr~LLk~-G~~Vval~R  112 (576)
T PLN03209         81 DLAFVAGATGKVGSRTVRELLKL-GFRVRAGVR  112 (576)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCeEEEEeC
Confidence            46999999999999999998764 888887654

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.83  E-value=0.073  Score=49.93  Aligned_cols=86  Identities=12%  Similarity=0.053  Sum_probs=52.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ..-+|+|+|+ |.+|+.+++.+... +++++. +|.+.. + ..+..    ..|..+ .++++++.      ..|++|++
T Consensus       194 ~Gk~VvViG~-G~IG~~vA~~ak~~-Ga~ViV-~d~dp~-r-~~~A~----~~G~~v-~~leeal~------~aDVVIta  257 (406)
T TIGR00936       194 AGKTVVVAGY-GWCGKGIAMRARGM-GARVIV-TEVDPI-R-ALEAA----MDGFRV-MTMEEAAK------IGDIFITA  257 (406)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHhhC-cCEEEE-EeCChh-h-HHHHH----hcCCEe-CCHHHHHh------cCCEEEEC
Confidence            3459999997 99999999988754 888654 654321 1 11111    123332 35677764      78999988


Q ss_pred             cCchhHHH-HHHHHHHCCCcEEE
Q 027650          114 TDASTVYD-NVKQATAFGMRSVV  135 (220)
Q Consensus       114 T~p~~~~~-~~~~al~~G~~vVi  135 (220)
                      |....... .....++.|.-++.
T Consensus       258 TG~~~vI~~~~~~~mK~GailiN  280 (406)
T TIGR00936       258 TGNKDVIRGEHFENMKDGAIVAN  280 (406)
T ss_pred             CCCHHHHHHHHHhcCCCCcEEEE
Confidence            86555443 34455666654443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.82  E-value=0.051  Score=47.93  Aligned_cols=127  Identities=17%  Similarity=0.133  Sum_probs=66.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-ccccCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g-v~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ..||.|+|+ |++|+.++..+... ++.=+-+++++.  +.+.++...-.... +.+..+..+.+.      ++|+||..
T Consensus       123 ~k~vlVlGa-Gg~a~ai~~aL~~~-g~~~V~v~~R~~--~~a~~l~~~~~~~~~~~~~~~~~~~~~------~~DivIna  192 (278)
T PRK00258        123 GKRILILGA-GGAARAVILPLLDL-GVAEITIVNRTV--ERAEELAKLFGALGKAELDLELQEELA------DFDLIINA  192 (278)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEEeCCH--HHHHHHHHHhhhccceeecccchhccc------cCCEEEEC
Confidence            358999997 99999999999864 533344556532  22222221000111 222113334443      79999977


Q ss_pred             cCchhHH-----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          114 TDASTVY-----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       114 T~p~~~~-----~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      |+.....     +.....+..+ .+|+- --+++.. ..|.+.|++.|.+++-    .+++ |+.+++.+.
T Consensus       193 Tp~g~~~~~~~~~~~~~~l~~~-~~v~D-ivY~P~~-T~ll~~A~~~G~~~~~----G~~M-l~~Qa~~~f  255 (278)
T PRK00258        193 TSAGMSGELPLPPLPLSLLRPG-TIVYD-MIYGPLP-TPFLAWAKAQGARTID----GLGM-LVHQAAEAF  255 (278)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCC-CEEEE-eecCCCC-CHHHHHHHHCcCeecC----CHHH-HHHHHHHHH
Confidence            6532211     1112334444 33321 1223322 3477888888876653    5555 555665444

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.81  E-value=0.13  Score=47.01  Aligned_cols=96  Identities=19%  Similarity=0.294  Sum_probs=59.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC------------Ccchh-----------hhhcCCCCCCcccc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV------------GEDIG-----------MVCDMEQPLEIPVM   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~------------g~d~g-----------~l~g~~~~~gv~v~   91 (220)
                      ..||.|+|+ |.+|..++..+... ++.=+.++|.+..            -.|++           .+..+.....+..+
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~  101 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRA-GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI  101 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHc-CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            458999998 99999999998764 7766678885320            01111           01111111111111


Q ss_pred             ------CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650           92 ------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        92 ------~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                            .++++++.      ++|+|||++..... ...-..|.+.|+|+|.|..
T Consensus       102 ~~~~~~~~~~~~~~------~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~  149 (339)
T PRK07688        102 VQDVTAEELEELVT------GVDLIIDATDNFETRFIVNDAAQKYGIPWIYGAC  149 (339)
T ss_pred             eccCCHHHHHHHHc------CCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence                  12344553      79999998854444 4556889999999997654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.80  E-value=0.13  Score=44.71  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=26.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..||+|+|+ |..|..+++.+.. .++.=..++|.
T Consensus        32 ~~~VliiG~-GglGs~va~~La~-~Gvg~i~lvD~   64 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAA-AGVGTLTLVDF   64 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcC
Confidence            459999998 9999999999876 47665667774

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.79  E-value=0.096  Score=44.11  Aligned_cols=33  Identities=15%  Similarity=0.341  Sum_probs=28.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      .||.|+|+ |.+|.++++.+.. .|+.=+.++|++
T Consensus        22 s~VlIiG~-gglG~evak~La~-~GVg~i~lvD~d   54 (197)
T cd01492          22 ARILLIGL-KGLGAEIAKNLVL-SGIGSLTILDDR   54 (197)
T ss_pred             CcEEEEcC-CHHHHHHHHHHHH-cCCCEEEEEECC
Confidence            58999998 8899999999876 588877788864

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.78  E-value=0.18  Score=46.88  Aligned_cols=30  Identities=23%  Similarity=0.434  Sum_probs=23.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |||+|+|. |+||..++..+. . ++++++ +|.
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA-~-G~~Vig-vD~   30 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIA-Q-NHEVVA-LDI   30 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHH-h-CCcEEE-EEC
Confidence            48999996 999999996655 3 788775 664

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=95.74  E-value=0.057  Score=53.21  Aligned_cols=34  Identities=24%  Similarity=0.199  Sum_probs=29.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      ++||.|.|++|-+|+.+++.+.++.+.+++++..
T Consensus       315 ~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r  348 (660)
T PRK08125        315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI  348 (660)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence            4689999999999999999998766799998643

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=95.72  E-value=0.082  Score=45.40  Aligned_cols=86  Identities=17%  Similarity=0.175  Sum_probs=48.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ||+++|.|. |+||..+++.+... +.|++-+..+..  +......   +.++..+ -.+.+++.+      ..|||| .
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~a-g~eV~igs~r~~--~~~~a~a---~~l~~~i~~~~~~dA~~------~aDVVv-L   66 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKA-GHEVIIGSSRGP--KALAAAA---AALGPLITGGSNEDAAA------LADVVV-L   66 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhC-CCeEEEecCCCh--hHHHHHH---HhhccccccCChHHHHh------cCCEEE-E
Confidence            688999995 99999999988764 788876544321  1111111   0112112 234455543      699999 6


Q ss_pred             cCchhH-HHHHHHHHH-C-CCcEE
Q 027650          114 TDASTV-YDNVKQATA-F-GMRSV  134 (220)
Q Consensus       114 T~p~~~-~~~~~~al~-~-G~~vV  134 (220)
                      +.|-.. .+.+....+ . |+-||
T Consensus        67 AVP~~a~~~v~~~l~~~~~~KIvI   90 (211)
T COG2085          67 AVPFEAIPDVLAELRDALGGKIVI   90 (211)
T ss_pred             eccHHHHHhHHHHHHHHhCCeEEE
Confidence            666544 444443332 3 45444

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=95.72  E-value=0.093  Score=49.35  Aligned_cols=31  Identities=26%  Similarity=0.426  Sum_probs=25.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +|||+|+|. |+||.-++..+..  ++++++ +|.
T Consensus         6 ~mkI~vIGl-GyvGlpmA~~la~--~~~V~g-~D~   36 (425)
T PRK15182          6 EVKIAIIGL-GYVGLPLAVEFGK--SRQVVG-FDV   36 (425)
T ss_pred             CCeEEEECc-CcchHHHHHHHhc--CCEEEE-EeC
Confidence            479999995 9999999998765  588876 664

>PLN02206 UDP-glucuronate decarboxylase

Probab=95.71  E-value=0.064  Score=50.54  Aligned_cols=31  Identities=19%  Similarity=0.304  Sum_probs=27.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .+||.|.|++|-+|+.+++.+.+. +.+++++
T Consensus       119 ~~kILVTGatGfIGs~Lv~~Ll~~-G~~V~~l  149 (442)
T PLN02206        119 GLRVVVTGGAGFVGSHLVDRLMAR-GDSVIVV  149 (442)
T ss_pred             CCEEEEECcccHHHHHHHHHHHHC-cCEEEEE
Confidence            479999999999999999999875 7888865

>PRK08223 hypothetical protein; Validated

Probab=95.69  E-value=0.076  Score=47.63  Aligned_cols=32  Identities=19%  Similarity=0.318  Sum_probs=27.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      -||+|+|+ |.+|..++..+... ++.=..++|.
T Consensus        28 s~VlIvG~-GGLGs~va~~LA~a-GVG~i~lvD~   59 (287)
T PRK08223         28 SRVAIAGL-GGVGGIHLLTLARL-GIGKFTIADF   59 (287)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHh-CCCeEEEEeC
Confidence            58999998 99999999988764 7777778884

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.67  E-value=0.34  Score=45.63  Aligned_cols=138  Identities=15%  Similarity=0.138  Sum_probs=71.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--ch-hhhhcCCCCCCcccc--CCHHHHHhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DI-GMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~-g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV  110 (220)
                      .||+|+|. |+.|+.+++.+.+ .+.++.+ +|......  +. .++.    ..|+.++  .+..+.+.      ++|+|
T Consensus        15 ~~i~v~G~-G~sG~a~a~~L~~-~G~~V~~-~D~~~~~~~~~~~~~l~----~~gi~~~~~~~~~~~~~------~~dlV   81 (458)
T PRK01710         15 KKVAVVGI-GVSNIPLIKFLVK-LGAKVTA-FDKKSEEELGEVSNELK----ELGVKLVLGENYLDKLD------GFDVI   81 (458)
T ss_pred             CeEEEEcc-cHHHHHHHHHHHH-CCCEEEE-ECCCCCccchHHHHHHH----hCCCEEEeCCCChHHhc------cCCEE
Confidence            48999996 9999999988876 4777654 67432111  11 1221    3455553  22233343      68988


Q ss_pred             EEccC-chhHHHHHHHHHHCCCcEE--------------EeCCCCC-H-HHHHHHHHHhhhcCceEEEcCCCcHHHHHHH
Q 027650          111 IDFTD-ASTVYDNVKQATAFGMRSV--------------VYVPHIQ-L-ETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (220)
Q Consensus       111 IDfT~-p~~~~~~~~~al~~G~~vV--------------igTtG~~-~-e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~  173 (220)
                      | .|+ -....+.+..|.+.|++++              ||-||-+ + -..+-|..+-+..+.......|  +|+.++.
T Consensus        82 V-~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gn--iG~p~~~  158 (458)
T PRK01710         82 F-KTPSMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGN--IGTPLFS  158 (458)
T ss_pred             E-ECCCCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCc--cChhHHH
Confidence            7 453 1122355666666666654              3334321 1 1122334444445555556677  4655543


Q ss_pred             HHHHHhcCCCCCeEEEecc
Q 027650          174 QAAISASFHYKNVEIVESR  192 (220)
Q Consensus       174 ~~a~~~~~~~~diEIiE~H  192 (220)
                      .+. ...  ..|+-|+|+=
T Consensus       159 ~~~-~~~--~~~~~VlE~~  174 (458)
T PRK01710        159 NIE-EIK--EEDKVVLELS  174 (458)
T ss_pred             HHh-hCC--CCCEEEEEcC
Confidence            222 221  2355555553

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.66  E-value=0.017  Score=51.87  Aligned_cols=90  Identities=18%  Similarity=0.143  Sum_probs=58.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .+|+|+|+ |.+|+.+++.+....+.+-+.+++++.  ..+..+...-...++.+ ++++++++.      ++|+||-+|
T Consensus       126 ~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~--~~a~~~a~~~~~~~~~~~~~~~~~av~------~aDiVitaT  196 (304)
T PRK07340        126 GDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTA--ASAAAFCAHARALGPTAEPLDGEAIPE------AVDLVVTAT  196 (304)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCH--HHHHHHHHHHHhcCCeeEECCHHHHhh------cCCEEEEcc
Confidence            48999996 999999999998766677788888742  11222221000112233 578888885      799999666


Q ss_pred             Cc-hhHHHHHHHHHHCCCcEE-EeC
Q 027650          115 DA-STVYDNVKQATAFGMRSV-VYV  137 (220)
Q Consensus       115 ~p-~~~~~~~~~al~~G~~vV-igT  137 (220)
                      +. +.+.   ...++.|.++. ||.
T Consensus       197 ~s~~Pl~---~~~~~~g~hi~~iGs  218 (304)
T PRK07340        197 TSRTPVY---PEAARAGRLVVAVGA  218 (304)
T ss_pred             CCCCcee---CccCCCCCEEEecCC
Confidence            43 3222   22368888886 454

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.65  E-value=0.17  Score=45.14  Aligned_cols=105  Identities=17%  Similarity=0.140  Sum_probs=55.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEE-EEEEecCCCCcchhhhhcCCCCCCccc--cCCH-HHHHhccccCCCccE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEV-AGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDL-TMVLGSISQSKARAV  109 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL-vg~vd~~~~g~d~g~l~g~~~~~gv~v--~~dl-~~~l~~~~~~~~~DV  109 (220)
                      .++||+|+|. |-||+-+++.+... +..+ +-..|..........      .+|+.-  ..+. .+..      ..+|+
T Consensus         2 ~~~~v~IvG~-GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a~------~lgv~d~~~~~~~~~~~------~~aD~   67 (279)
T COG0287           2 ASMKVGIVGL-GLMGGSLARALKEA-GLVVRIIGRDRSAATLKAAL------ELGVIDELTVAGLAEAA------AEADL   67 (279)
T ss_pred             CCcEEEEECC-chHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHHh------hcCcccccccchhhhhc------ccCCE
Confidence            4679999995 99999999998764 4433 222332210000111      122211  1222 2222      36899


Q ss_pred             EEEccCchhHHHHHHHHHH-CCCc-EEEeCCCCCHHHHHHHHHHh
Q 027650          110 VIDFTDASTVYDNVKQATA-FGMR-SVVYVPHIQLETVSALSAFC  152 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~-~G~~-vVigTtG~~~e~~~~L~~aA  152 (220)
                      ||-.++.....+.++.... .... +|+.++..-..-.+.+++..
T Consensus        68 VivavPi~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~  112 (279)
T COG0287          68 VIVAVPIEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYL  112 (279)
T ss_pred             EEEeccHHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhc
Confidence            8866666666676665553 2222 44455555444445555554

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.65  E-value=0.3  Score=45.49  Aligned_cols=121  Identities=22%  Similarity=0.209  Sum_probs=66.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcch----hhhhcCCCCCCccc-cC-CHHHHHhccccCCCccE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDI----GMVCDMEQPLEIPV-MS-DLTMVLGSISQSKARAV  109 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~----g~l~g~~~~~gv~v-~~-dl~~~l~~~~~~~~~DV  109 (220)
                      .+|+|+|+ |++|..+++.+.+ .+.++++ +|+... ...    .++.    ..|+.+ +. ..++.+.      ++|+
T Consensus         6 k~v~iiG~-g~~G~~~A~~l~~-~G~~V~~-~d~~~~-~~~~~~~~~l~----~~~~~~~~~~~~~~~~~------~~d~   71 (450)
T PRK14106          6 KKVLVVGA-GVSGLALAKFLKK-LGAKVIL-TDEKEE-DQLKEALEELG----ELGIELVLGEYPEEFLE------GVDL   71 (450)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCch-HHHHHHHHHHH----hcCCEEEeCCcchhHhh------cCCE
Confidence            58999997 8899999998876 5888765 565321 111    2221    223333 22 2333332      7999


Q ss_pred             EEEccCchhHHHHHHHHHHCCCcE--------------EEeCCCCC--HHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650          110 VIDFTDASTVYDNVKQATAFGMRS--------------VVYVPHIQ--LETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~v--------------VigTtG~~--~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                      ||..+......+.+..|.+.|+++              |||-||-+  --..+-|..+-+..+-++.+..|  +|+.+.
T Consensus        72 vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~--ig~~~~  148 (450)
T PRK14106         72 VVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGN--IGYPLI  148 (450)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCc--ccHHHH
Confidence            886554333344555556666554              44555432  11223344444445555666666  555443

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=95.65  E-value=0.083  Score=46.68  Aligned_cols=94  Identities=14%  Similarity=0.131  Sum_probs=54.1

Q ss_pred             EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC----CCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ----PLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        39 ~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~----~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .|.|++|.+|+.+++.+.+..+..=|-++|..........+...+.    ..++.-.+++++++.      ++|+||...
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~------g~d~V~H~A   74 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALE------GVDVVFHTA   74 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhc------CCceEEEeC
Confidence            3799999999999999998765333345554221111111111000    011222446667775      799999864


Q ss_pred             Cc-----------------hhHHHHHHHHHHCCCcEEEeCC
Q 027650          115 DA-----------------STVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       115 ~p-----------------~~~~~~~~~al~~G~~vVigTt  138 (220)
                      .+                 ..+...+..|.++|+.-+|=|.
T Consensus        75 a~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytS  115 (280)
T PF01073_consen   75 APVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTS  115 (280)
T ss_pred             ccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            21                 1223466788888988665443

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.63  E-value=0.14  Score=44.40  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=25.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..||+|+|+ |.+|..+++.+... ++.=.-++|.
T Consensus        11 ~~~VlVvG~-GGvGs~va~~Lar~-GVg~i~LvD~   43 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEALARS-GVGKLTLIDF   43 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHc-CCCEEEEECC
Confidence            458999998 99999999998764 6644456774

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.59  E-value=0.018  Score=45.93  Aligned_cols=127  Identities=14%  Similarity=0.094  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g--~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      |||+|+|++|++|+.++-.+...+-..=+..+|...   .|  .|+....... ...+.+..+..+.+.      ++|+|
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~-~~~~~i~~~~~~~~~------~aDiv   73 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPL-PSPVRITSGDYEALK------DADIV   73 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGS-TEEEEEEESSGGGGT------TESEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhc-ccccccccccccccc------cccEE
Confidence            699999999999999999887764433244677531   11  1222222110 122333334444443      79988


Q ss_pred             EEccC-chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcC
Q 027650          111 IDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASF  181 (220)
Q Consensus       111 IDfT~-p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~  181 (220)
                      |-... |..--..=...++.+.+++       .+-.++|.+.+-+  .-+++..|   -++++.+++....+
T Consensus        74 vitag~~~~~g~sR~~ll~~N~~i~-------~~~~~~i~~~~p~--~~vivvtN---Pvd~~t~~~~~~s~  133 (141)
T PF00056_consen   74 VITAGVPRKPGMSRLDLLEANAKIV-------KEIAKKIAKYAPD--AIVIVVTN---PVDVMTYVAQKYSG  133 (141)
T ss_dssp             EETTSTSSSTTSSHHHHHHHHHHHH-------HHHHHHHHHHSTT--SEEEE-SS---SHHHHHHHHHHHHT
T ss_pred             EEeccccccccccHHHHHHHhHhHH-------HHHHHHHHHhCCc--cEEEEeCC---cHHHHHHHHHHhhC
Confidence            84331 2110000111223333333       4566677777743  44555555   25566666655543

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.59  E-value=0.46  Score=45.02  Aligned_cols=143  Identities=14%  Similarity=0.167  Sum_probs=74.8

Q ss_pred             CCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC--CHHHHHhccccCCC
Q 027650           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKA  106 (220)
Q Consensus        29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~--dl~~~l~~~~~~~~  106 (220)
                      ..|.-.+.||.|+|+ |+.|+.+++.+.. .+.++. ++|++..  ...++.   ...|+.++.  +..+-+.      +
T Consensus         9 ~~~~~~~~~v~v~G~-G~sG~a~a~~L~~-~G~~V~-~~D~~~~--~~~~~l---~~~gi~~~~~~~~~~~~~------~   74 (473)
T PRK00141          9 ALPQELSGRVLVAGA-GVSGRGIAAMLSE-LGCDVV-VADDNET--ARHKLI---EVTGVADISTAEASDQLD------S   74 (473)
T ss_pred             hcccccCCeEEEEcc-CHHHHHHHHHHHH-CCCEEE-EECCChH--HHHHHH---HhcCcEEEeCCCchhHhc------C
Confidence            445556678999996 9999999998875 466554 4675321  122222   134666643  2233343      6


Q ss_pred             ccEEEEccC--chhHHHHHHHHHHCCCcE---------------------EEeCCCCC-H-HHHHHHHHHhhhcCceEEE
Q 027650          107 RAVVIDFTD--ASTVYDNVKQATAFGMRS---------------------VVYVPHIQ-L-ETVSALSAFCDKASMGCLI  161 (220)
Q Consensus       107 ~DVVIDfT~--p~~~~~~~~~al~~G~~v---------------------VigTtG~~-~-e~~~~L~~aA~~~~v~vvi  161 (220)
                      +|+|| .|+  |... +.+..|.+.|+++                     +||-||-+ + -...-|..+-+..|.....
T Consensus        75 ~d~vV-~Spgi~~~~-p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~  152 (473)
T PRK00141         75 FSLVV-TSPGWRPDS-PLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQA  152 (473)
T ss_pred             CCEEE-eCCCCCCCC-HHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence            89887 553  3322 3344445555433                     34555532 1 1223344444555556666


Q ss_pred             cCCCcHHHHHHHHHHHHhcCCCCCeEEEecc
Q 027650          162 APTLSIGSILLQQAAISASFHYKNVEIVESR  192 (220)
Q Consensus       162 apNfS~Gv~ll~~~a~~~~~~~~diEIiE~H  192 (220)
                      ..|+.....  ..+.   .....++=++|.-
T Consensus       153 ~Gnig~p~~--~~l~---~~~~~~~~V~E~s  178 (473)
T PRK00141        153 VGNIGVPVS--AALV---AQPRIDVLVAELS  178 (473)
T ss_pred             eccCChhHH--HHHh---cCCCCCEEEEecC
Confidence            677544332  1111   1123466666764

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.58  E-value=0.21  Score=44.04  Aligned_cols=92  Identities=20%  Similarity=0.229  Sum_probs=58.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC----------------CCCcchhh-----hhcCCCCCCccc-----
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------------SVGEDIGM-----VCDMEQPLEIPV-----   90 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------------~~g~d~g~-----l~g~~~~~gv~v-----   90 (220)
                      +|.|+|. |++|+-.++++.. .++.=.-++|.+                ..|+.--+     +..+.....|..     
T Consensus        32 ~V~VvGi-GGVGSw~veALaR-sGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~  109 (263)
T COG1179          32 HVCVVGI-GGVGSWAVEALAR-SGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI  109 (263)
T ss_pred             cEEEEec-CchhHHHHHHHHH-cCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence            7999998 9999999998875 466555566631                11221100     111111122222     


Q ss_pred             -cCCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEE
Q 027650           91 -MSDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVV  135 (220)
Q Consensus        91 -~~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVi  135 (220)
                       -+++++++.     .++|-|||+-..-.. .+.+.+|.++++++|.
T Consensus       110 t~en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIs  151 (263)
T COG1179         110 TEENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVIS  151 (263)
T ss_pred             CHhHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEe
Confidence             145677776     489999998754333 6778899999999985

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.57  E-value=0.075  Score=48.58  Aligned_cols=146  Identities=12%  Similarity=0.126  Sum_probs=78.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .+|+|+|. |.||+.+++.+.. -++++++..++   ++... .+   ...|+.+ .++++++.      .+|+|+-..+
T Consensus        17 KtVGIIG~-GsIG~amA~nL~d-~G~~ViV~~r~---~~s~~-~A---~~~G~~v-~sl~Eaak------~ADVV~llLP   80 (335)
T PRK13403         17 KTVAVIGY-GSQGHAQAQNLRD-SGVEVVVGVRP---GKSFE-VA---KADGFEV-MSVSEAVR------TAQVVQMLLP   80 (335)
T ss_pred             CEEEEEeE-cHHHHHHHHHHHH-CcCEEEEEECc---chhhH-HH---HHcCCEE-CCHHHHHh------cCCEEEEeCC
Confidence            58999996 9999999999875 58999875443   12111 11   0224443 38999986      7999884433


Q ss_pred             chhHHHHH----HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEEec
Q 027650          116 ASTVYDNV----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES  191 (220)
Q Consensus       116 p~~~~~~~----~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIiE~  191 (220)
                      -+.....+    ...++.|. +++=.-||+-. ...|.   --.++-|++.+-=++|-.+=+.+.+..  -.+..  +=.
T Consensus        81 d~~t~~V~~~eil~~MK~Ga-iL~f~hgfni~-~~~i~---pp~~vdv~mvaPKgpG~~vR~~y~~G~--Gvp~l--~av  151 (335)
T PRK13403         81 DEQQAHVYKAEVEENLREGQ-MLLFSHGFNIH-FGQIN---PPSYVDVAMVAPKSPGHLVRRVFQEGN--GVPAL--VAV  151 (335)
T ss_pred             ChHHHHHHHHHHHhcCCCCC-EEEECCCccee-cCcee---CCCCCeEEEECCCCCChHHHHHHHcCC--CceeE--EEE
Confidence            22222222    22233444 33335577642 11111   123466664433377874444443211  12222  222


Q ss_pred             cCCCCCCCCchhhHHHHHHh
Q 027650          192 RPNARMQLKSPTTSPTLVRS  211 (220)
Q Consensus       192 HH~~K~DaPSGTA~~~~~~~  211 (220)
                      |.    | +||.|.+.+..-
T Consensus       152 ~q----d-~sg~a~~~ala~  166 (335)
T PRK13403        152 HQ----D-ATGTALHVALAY  166 (335)
T ss_pred             EE----C-CCCcHHHHHHHH
Confidence            22    6 588888755443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.55  E-value=0.12  Score=47.90  Aligned_cols=96  Identities=20%  Similarity=0.317  Sum_probs=59.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhhcCCCCCCcccc--
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVM--   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g---------~l~g~~~~~gv~v~--   91 (220)
                      ..||.|+|+ |.+|..+++.+... ++.=+.++|.+.     .+       .|+|         .+..+.....+..+  
T Consensus        41 ~~~VliiG~-GglG~~v~~~La~~-Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~  118 (370)
T PRK05600         41 NARVLVIGA-GGLGCPAMQSLASA-GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE  118 (370)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHc-CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence            358999998 99999999998764 665566777421     11       1111         01111111112222  


Q ss_pred             ----CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                          .+.++++.      ++|+|||++..-.. ...-..|.++|+|+|.|..
T Consensus       119 ~i~~~~~~~~~~------~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~  164 (370)
T PRK05600        119 RLTAENAVELLN------GVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV  164 (370)
T ss_pred             ecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence                23445554      79999999865444 4445789999999997654

>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase

Probab=95.54  E-value=0.16  Score=47.60  Aligned_cols=92  Identities=18%  Similarity=0.245  Sum_probs=61.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH---HHHhccccCCCccE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAV  109 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~---~~l~~~~~~~~~DV  109 (220)
                      .-||.|+|+ |..|..+++.+.+++  +++++|.+|.+..  ..+.      ..|+|+..+.+   +.+.+    .++|.
T Consensus       128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~--~~~~------~~gvpVlg~~~dl~~~i~~----~~vd~  194 (451)
T TIGR03023       128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPD--ARTG------VRGVPVLGKLDDLEELIRE----GEVDE  194 (451)
T ss_pred             CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCc--cccc------cCCCCccCCHHHHHHHHHh----cCCCE
Confidence            358999997 999999999998755  5899999985321  1111      23667765544   44443    57897


Q ss_pred             EEEccCc---hhHHHHHHHHHHCCCcEEEeCCCC
Q 027650          110 VIDFTDA---STVYDNVKQATAFGMRSVVYVPHI  140 (220)
Q Consensus       110 VIDfT~p---~~~~~~~~~al~~G~~vVigTtG~  140 (220)
                      ||...+.   +...+.+..|.+.|+.+.+ -|.+
T Consensus       195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~v-vP~~  227 (451)
T TIGR03023       195 VYIALPLAAEDRILELLDALEDLTVDVRL-VPDL  227 (451)
T ss_pred             EEEeeCcccHHHHHHHHHHHHhcCCEEEE-eCch
Confidence            7744322   2335667788889998876 3443

Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=95.54  E-value=0.066  Score=46.76  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=27.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +||.|.|++|.+|+.+++.+.+. +.+++++..+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~-g~~V~~~~r~   33 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQ-GEEVRVLVRP   33 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHC-CCEEEEEEec
Confidence            48999999999999999998865 6788776543

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.53  E-value=0.18  Score=43.26  Aligned_cols=125  Identities=21%  Similarity=0.244  Sum_probs=70.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc---c-CCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---M-SDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v---~-~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |+++|+|+ |++|..+++.+.+ .+.+++.+-+..   ....+...  ...+..+   . ++.+.+ .+.+- .++|++|
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~-~g~~Vv~Id~d~---~~~~~~~~--~~~~~~~v~gd~t~~~~L-~~agi-~~aD~vv   71 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSE-EGHNVVLIDRDE---ERVEEFLA--DELDTHVVIGDATDEDVL-EEAGI-DDADAVV   71 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHh-CCCceEEEEcCH---HHHHHHhh--hhcceEEEEecCCCHHHH-HhcCC-CcCCEEE
Confidence            68999998 9999999999876 477787655421   11122111  0122222   1 233333 22111 2789888


Q ss_pred             EccCchhHHHH-HHHHHH-CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHH
Q 027650          112 DFTDASTVYDN-VKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (220)
Q Consensus       112 DfT~p~~~~~~-~~~al~-~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~  174 (220)
                      -.|.-+...-. ...+++ .|++-|+.+. -+++..+.+    ++.|+-.+++|-...|-.+...
T Consensus        72 a~t~~d~~N~i~~~la~~~~gv~~viar~-~~~~~~~~~----~~~g~~~ii~Pe~~~~~~l~~~  131 (225)
T COG0569          72 AATGNDEVNSVLALLALKEFGVPRVIARA-RNPEHEKVL----EKLGADVIISPEKLAAKRLARL  131 (225)
T ss_pred             EeeCCCHHHHHHHHHHHHhcCCCcEEEEe-cCHHHHHHH----HHcCCcEEECHHHHHHHHHHHH
Confidence            56655444322 234444 7899888654 233332233    3345778888887777765443

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.52  E-value=0.47  Score=44.33  Aligned_cols=135  Identities=15%  Similarity=0.171  Sum_probs=73.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCcccc-C--CHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-S--DLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~-~--dl~~~l~~~~~~~~~DVV  110 (220)
                      +.||.|+|. |+.|...++.+....+ .++. +.|....-.....+.    . |+.++ .  +.+ .+.      ++|+|
T Consensus         7 ~~~v~viG~-G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~l~----~-g~~~~~g~~~~~-~~~------~~d~v   72 (438)
T PRK04663          7 IKNVVVVGL-GITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQLP----E-DVELHSGGWNLE-WLL------EADLV   72 (438)
T ss_pred             CceEEEEec-cHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHHhh----c-CCEEEeCCCChH-Hhc------cCCEE
Confidence            468999997 9999999999887765 7776 477432111111221    2 55553 2  323 333      68977


Q ss_pred             EEccC--chhHHHHHHHHHHCCCcEE--------------EeCCCCC-H-HHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650          111 IDFTD--ASTVYDNVKQATAFGMRSV--------------VYVPHIQ-L-ETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       111 IDfT~--p~~~~~~~~~al~~G~~vV--------------igTtG~~-~-e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                      | .|+  |.. .+.+..|.++|++++              ||-||-+ + -...-|..+-++.|....+..|+  |+.++
T Consensus        73 V-~SpgI~~~-~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni--G~~~~  148 (438)
T PRK04663         73 V-TNPGIALA-TPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI--GVPAL  148 (438)
T ss_pred             E-ECCCCCCC-CHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc--CHHHH
Confidence            7 453  332 344556666666653              4555432 1 12233445555566666677774  55443


Q ss_pred             HHHHHHhcCCCCCeEEEecc
Q 027650          173 QQAAISASFHYKNVEIVESR  192 (220)
Q Consensus       173 ~~~a~~~~~~~~diEIiE~H  192 (220)
                      ..    +. ...|+-|+|.=
T Consensus       149 ~~----~~-~~~~~~V~E~s  163 (438)
T PRK04663        149 DL----LE-QDAELYVLELS  163 (438)
T ss_pred             hh----hc-CCCCEEEEEcC
Confidence            21    11 12366666654

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.52  E-value=0.19  Score=45.08  Aligned_cols=119  Identities=16%  Similarity=0.211  Sum_probs=66.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cchhh-hhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-EDIGM-VCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d~g~-l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .||.|+|+ |.+|.++++.+.. .++.=+.++|.+... .|++. +.-..+..|-+-.....+-+.+    -+++|-|+.
T Consensus        20 s~VLIvG~-gGLG~EiaKnLal-aGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~e----LNp~V~V~~   93 (286)
T cd01491          20 SNVLISGL-GGLGVEIAKNLIL-AGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAE----LNPYVPVTV   93 (286)
T ss_pred             CcEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHH----HCCCCEEEE
Confidence            58999998 9999999999875 588888889864211 11111 0000000011111111112222    367776654


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      -......+.+     .+..+|+-+.. +.+...+|.++|+++++|++.+.-+.
T Consensus        94 ~~~~~~~~~l-----~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G  140 (286)
T cd01491          94 STGPLTTDEL-----LKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG  140 (286)
T ss_pred             EeccCCHHHH-----hcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence            3322222222     23456665543 66777888999999999988765433

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.51  E-value=0.12  Score=46.60  Aligned_cols=33  Identities=18%  Similarity=0.160  Sum_probs=28.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .++||.|.|++|.+|+.+++.+.+. +.+++++.
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d   46 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFL-NQTVIGLD   46 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEe
Confidence            4579999999999999999999875 67888664

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=95.48  E-value=0.13  Score=47.07  Aligned_cols=120  Identities=16%  Similarity=0.176  Sum_probs=75.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC------cchhhhhcCC---------------CCCCcc----c-
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG------EDIGMVCDME---------------QPLEIP----V-   90 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g------~d~g~l~g~~---------------~~~gv~----v-   90 (220)
                      -|.|+|| |++|+-++..+.. .|++=.-++|.+...      .....+...+               .-+.+.    . 
T Consensus        76 yVVVVG~-GgVGSwv~nmL~R-SG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~  153 (430)
T KOG2018|consen   76 YVVVVGA-GGVGSWVANMLLR-SGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLW  153 (430)
T ss_pred             EEEEEec-CchhHHHHHHHHH-hcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhhc
Confidence            4899998 9999999988775 588888888842110      0001111100               000110    1 


Q ss_pred             -cCCHHHHHhccccCCCccEEEEccC-chhHHHHHHHHHHCCCcEEEeCCC---------------------CCHHHHHH
Q 027650           91 -MSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPH---------------------IQLETVSA  147 (220)
Q Consensus        91 -~~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigTtG---------------------~~~e~~~~  147 (220)
                       .++-++++.     .+||.|||+-. -+.-.+.+.+|-.+|++|+..|-.                     ++..-..+
T Consensus       154 ~~~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrr  228 (430)
T KOG2018|consen  154 TSSSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRR  228 (430)
T ss_pred             CCCchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHH
Confidence             234556664     48999999864 555579999999999999965421                     12234455


Q ss_pred             HHHHhhhcCceEEEcC
Q 027650          148 LSAFCDKASMGCLIAP  163 (220)
Q Consensus       148 L~~aA~~~~v~vviap  163 (220)
                      |+..--..|+|+++|.
T Consensus       229 Lrk~GI~~GIpVVFS~  244 (430)
T KOG2018|consen  229 LRKRGIEGGIPVVFSL  244 (430)
T ss_pred             HHHhccccCCceEEec
Confidence            6655556899999864

>PLN02214 cinnamoyl-CoA reductase

Probab=95.48  E-value=0.13  Score=46.35  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=28.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .+++|.|.|++|.+|+.+++.+.+. +.++++...
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r   42 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLER-GYTVKGTVR   42 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeC
Confidence            3568999999999999999998764 788888654

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.48  E-value=0.045  Score=49.44  Aligned_cols=72  Identities=14%  Similarity=0.161  Sum_probs=42.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CCcc--hhhhhcC-CCCCCccccCCHHHHHhccccCCCc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGED--IGMVCDM-EQPLEIPVMSDLTMVLGSISQSKAR  107 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~d--~g~l~g~-~~~~gv~v~~dl~~~l~~~~~~~~~  107 (220)
                      ..+||+|+|+ |.||..++-.+....-.+ +.++|.+.   .|..  ....... +....+..++|++ .+.      ++
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~------~A   74 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIK------DS   74 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhC------CC
Confidence            3469999998 999999988776653256 66888632   1211  1111100 0012233357887 444      89


Q ss_pred             cEEEEcc
Q 027650          108 AVVIDFT  114 (220)
Q Consensus       108 DVVIDfT  114 (220)
                      |+||...
T Consensus        75 DiVVita   81 (319)
T PTZ00117         75 DVVVITA   81 (319)
T ss_pred             CEEEECC
Confidence            9888543

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.47  E-value=0.13  Score=46.89  Aligned_cols=106  Identities=20%  Similarity=0.153  Sum_probs=63.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -.+|||+|. |++|+.+++.+... ++++.+ +|+.. .++...      ..++.-.+++++++.      .+|+|+-.+
T Consensus       142 gkTvGIiG~-G~IG~~va~~l~af-gm~v~~-~d~~~-~~~~~~------~~~~~~~~~Ld~lL~------~sDiv~lh~  205 (324)
T COG0111         142 GKTVGIIGL-GRIGRAVAKRLKAF-GMKVIG-YDPYS-PRERAG------VDGVVGVDSLDELLA------EADILTLHL  205 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCeEEE-ECCCC-chhhhc------cccceecccHHHHHh------hCCEEEEcC
Confidence            468999996 99999999988765 899986 56521 222211      223444678999997      799888554


Q ss_pred             C--chhH-H--HHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCce
Q 027650          115 D--ASTV-Y--DNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG  158 (220)
Q Consensus       115 ~--p~~~-~--~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~  158 (220)
                      +  |+.. .  +.....++.|. ++|-+- |---++ +.|.++-++..+.
T Consensus       206 PlT~eT~g~i~~~~~a~MK~ga-ilIN~aRG~vVde-~aL~~AL~~G~i~  253 (324)
T COG0111         206 PLTPETRGLINAEELAKMKPGA-ILINAARGGVVDE-DALLAALDSGKIA  253 (324)
T ss_pred             CCCcchhcccCHHHHhhCCCCe-EEEECCCcceecH-HHHHHHHHcCCcc
Confidence            3  2221 1  22223344555 666555 432222 4455555554443

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=95.45  E-value=0.047  Score=48.79  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |.||.|.|++|.+|+.+++.+.+. +.+++.++++
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~-g~~~v~~~~~   34 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINE-TSDAVVVVDK   34 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHc-CCCEEEEEec
Confidence            569999999999999999999874 6666666664

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.44  E-value=0.098  Score=45.94  Aligned_cols=95  Identities=15%  Similarity=0.132  Sum_probs=52.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC-----C--CCCCccccCCHHHHHhccccCCC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM-----E--QPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~--g~-----~--~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      |||+|+|+ |.||..++..+.+. +.++..+. +.   .....+.  |.     .  ........++.+++..      .
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~-g~~V~~~~-r~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~------~   68 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEA-GRDVTFLV-RP---KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG------P   68 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHC-CCceEEEe-cH---HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC------C
Confidence            58999997 99999999988764 66655443 31   1111110  00     0  0011123455655543      7


Q ss_pred             ccEEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCH
Q 027650          107 RAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQL  142 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~  142 (220)
                      +|++|.++.+..+.+.+...   +..+..+|+-..|+..
T Consensus        69 ~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~  107 (305)
T PRK12921         69 FDLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ  107 (305)
T ss_pred             CCEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence            99988776655555544433   3345555544458753

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.43  E-value=0.32  Score=46.24  Aligned_cols=146  Identities=21%  Similarity=0.151  Sum_probs=81.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCCCCCccccC--CHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~g~l~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVI  111 (220)
                      ++||+|+|- |+-|..+++.+.+. +.++. ++| +... ........  ...++.+..  ...+-+      ..+|+||
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~~-G~~v~-v~D~~~~~-~~~~~~~~--~~~~i~~~~g~~~~~~~------~~~d~vV   74 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLKL-GAEVT-VSDDRPAP-EGLAAQPL--LLEGIEVELGSHDDEDL------AEFDLVV   74 (448)
T ss_pred             CCEEEEEec-ccccHHHHHHHHHC-CCeEE-EEcCCCCc-cchhhhhh--hccCceeecCccchhcc------ccCCEEE
Confidence            679999995 99999999998764 66665 455 3221 10111100  022333321  112222      3789888


Q ss_pred             EccC--chhHHHHHHHHHHCCCcEE---------------EeCCCCC--HHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650          112 DFTD--ASTVYDNVKQATAFGMRSV---------------VYVPHIQ--LETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       112 DfT~--p~~~~~~~~~al~~G~~vV---------------igTtG~~--~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                       .++  |..+ +.+..|.+.|++++               |+-||-+  -.....|..+.++.|.+..+..|...++  +
T Consensus        75 -~SPGi~~~~-p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~--l  150 (448)
T COG0771          75 -KSPGIPPTH-PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA--L  150 (448)
T ss_pred             -ECCCCCCCC-HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH--H
Confidence             553  2222 24455555555443               3444432  2344667888899999999999977776  4


Q ss_pred             HHHHHHhcCCCCCeEEEeccCCCCCCC
Q 027650          173 QQAAISASFHYKNVEIVESRPNARMQL  199 (220)
Q Consensus       173 ~~~a~~~~~~~~diEIiE~HH~~K~Da  199 (220)
                      ..+. ..  ..+|+-++|.=-.+=.+.
T Consensus       151 ~~~~-~~--~~~d~~VlElSSfQL~~~  174 (448)
T COG0771         151 ELLE-QA--EPADVYVLELSSFQLETT  174 (448)
T ss_pred             Hhhc-cc--CCCCEEEEEccccccccC
Confidence            4332 11  235666676544443333

>PRK05086 malate dehydrogenase; Provisional

Probab=95.42  E-value=0.17  Score=45.59  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=25.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~   69 (220)
                      |||+|+|++|++|+.++..+.. .+....+.++|+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~   35 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDI   35 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEec
Confidence            6999999999999999987754 344444556664

>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional

Probab=95.40  E-value=0.2  Score=47.55  Aligned_cols=84  Identities=15%  Similarity=0.123  Sum_probs=57.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH---HHHhccccCCCccE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAV  109 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~---~~l~~~~~~~~~DV  109 (220)
                      .-||.|+|+ |..|+.+++.+.+++  +++++|.+|.+..+           ..++|++.+.+   +.+.+    .++|-
T Consensus       143 ~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~-----------g~~VpvlG~~~dL~~~v~~----~~Ide  206 (463)
T PRK10124        143 KRMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKPG-----------GVSNDWAGNLQQLVEDAKA----GKIHN  206 (463)
T ss_pred             CCcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCccc-----------cCCCCcCCCHHHHHHHHHh----CCCCE
Confidence            357999997 999999999998776  58999999853210           12344454544   44443    57897


Q ss_pred             EEEccCch----hHHHHHHHHHHCCCcEEE
Q 027650          110 VIDFTDAS----TVYDNVKQATAFGMRSVV  135 (220)
Q Consensus       110 VIDfT~p~----~~~~~~~~al~~G~~vVi  135 (220)
                      || .+.|.    ...+.+..|.+.|+++.+
T Consensus       207 Vi-IAip~~~~~~l~ell~~~~~~~v~V~i  235 (463)
T PRK10124        207 VY-IAMSMCDGARVKKLVRQLADTTCSVLL  235 (463)
T ss_pred             EE-EeCCCcchHHHHHHHHHHHHcCCeEEE
Confidence            77 34432    334566788889998876

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=95.40  E-value=0.091  Score=51.64  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=25.7

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEE
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEV   63 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eL   63 (220)
                      ...+|||.|.|++|.+|+.+++.+... +.++
T Consensus       377 ~~~~mkiLVtGa~G~iG~~l~~~L~~~-g~~v  407 (668)
T PLN02260        377 GKPSLKFLIYGRTGWIGGLLGKLCEKQ-GIAY  407 (668)
T ss_pred             CCCCceEEEECCCchHHHHHHHHHHhC-CCeE
Confidence            345689999999999999999988764 6666

>PRK12320 hypothetical protein; Provisional

Probab=95.38  E-value=0.16  Score=50.86  Aligned_cols=88  Identities=16%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh-hhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG-MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g-~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |||.|+|++|.+|+.+++.+.+ .+.+++++........+.+ ++.    ..++.-. .+.+++.      ++|+||.+.
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~-~G~~Vi~ldr~~~~~~~~~ve~v----~~Dl~d~-~l~~al~------~~D~VIHLA   68 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIA-AGHTVSGIAQHPHDALDPRVDYV----CASLRNP-VLQELAG------EADAVIHLA   68 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CCCEEEEEeCChhhcccCCceEE----EccCCCH-HHHHHhc------CCCEEEEcC
Confidence            5899999999999999998876 4788887553211000000 000    0011000 1334443      689999886


Q ss_pred             Cch----------hHHHHHHHHHHCCCcEEE
Q 027650          115 DAS----------TVYDNVKQATAFGMRSVV  135 (220)
Q Consensus       115 ~p~----------~~~~~~~~al~~G~~vVi  135 (220)
                      ...          .....+..|.+.|+.+|.
T Consensus        69 a~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~   99 (699)
T PRK12320         69 PVDTSAPGGVGITGLAHVANAAARAGARLLF   99 (699)
T ss_pred             ccCccchhhHHHHHHHHHHHHHHHcCCeEEE
Confidence            432          122345677788887764

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.36  E-value=0.28  Score=41.85  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=29.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ++||.|+|++|.+|+.+++.+.+. +.+++++...
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~R~   50 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAK-GFAVKAGVRD   50 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhC-CCEEEEEecC
Confidence            579999999999999999998774 7888877643

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.36  E-value=0.028  Score=50.56  Aligned_cols=88  Identities=10%  Similarity=0.099  Sum_probs=54.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CC-CCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQ-PLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~-~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .+|+|+|+ |.||+.+++.+....+.+=+-++++..  ..+.++... .. ...+.+.+++++++.      ++|+||-.
T Consensus       126 ~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~--~~a~~~a~~~~~~g~~~~~~~~~~~av~------~aDIVi~a  196 (314)
T PRK06141        126 SRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDP--AKAEALAAELRAQGFDAEVVTDLEAAVR------QADIISCA  196 (314)
T ss_pred             ceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCH--HHHHHHHHHHHhcCCceEEeCCHHHHHh------cCCEEEEe
Confidence            48999996 999999998777644555556777642  122222211 00 113566788998885      79998855


Q ss_pred             cCchhHHHHH-HHHHHCCCcEE
Q 027650          114 TDASTVYDNV-KQATAFGMRSV  134 (220)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vV  134 (220)
                      |+..  .+.+ ...++.|.++.
T Consensus       197 T~s~--~pvl~~~~l~~g~~i~  216 (314)
T PRK06141        197 TLST--EPLVRGEWLKPGTHLD  216 (314)
T ss_pred             eCCC--CCEecHHHcCCCCEEE
Confidence            5432  1212 24568888665

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=95.33  E-value=0.11  Score=50.02  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      -||+|+|+ |.||+.++..+... +++++ ++|+
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la~a-G~~V~-l~D~   38 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAAQA-GHTVL-LYDA   38 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhC-CCeEE-EEeC
Confidence            47999997 99999999988754 88887 5675

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.33  E-value=0.094  Score=48.68  Aligned_cols=127  Identities=18%  Similarity=0.292  Sum_probs=65.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc----CCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |||.|+|+ |++|+.+++.+.. .+.+++ ++|++.  .....+..   ..++++.    .+.+.+... . -.++|.||
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~-~g~~v~-vid~~~--~~~~~~~~---~~~~~~~~gd~~~~~~l~~~-~-~~~a~~vi   70 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSG-ENNDVT-VIDTDE--ERLRRLQD---RLDVRTVVGNGSSPDVLREA-G-AEDADLLI   70 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCcEE-EEECCH--HHHHHHHh---hcCEEEEEeCCCCHHHHHHc-C-CCcCCEEE
Confidence            58999998 9999999998876 478887 455421  11222210   1222221    122222110 0 03789888


Q ss_pred             EccCchhHHH-HHHHHHHC-CCcEEEeCCCCCHHHHHHHHHHh--hhcCceEEEcCCCcHHHHHHHH
Q 027650          112 DFTDASTVYD-NVKQATAF-GMRSVVYVPHIQLETVSALSAFC--DKASMGCLIAPTLSIGSILLQQ  174 (220)
Q Consensus       112 DfT~p~~~~~-~~~~al~~-G~~vVigTtG~~~e~~~~L~~aA--~~~~v~vviapNfS~Gv~ll~~  174 (220)
                      -++..+.... ....+.+. +.+-++..+.- .+. .+..++.  ++.|+-.+++|..-.+-.+...
T Consensus        71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~-~~~-~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~  135 (453)
T PRK09496         71 AVTDSDETNMVACQIAKSLFGAPTTIARVRN-PEY-AEYDKLFSKEALGIDLLISPELLVAREIARL  135 (453)
T ss_pred             EecCChHHHHHHHHHHHHhcCCCeEEEEECC-ccc-cchhhhhhhhcCCccEEECHHHHHHHHHHHH
Confidence            5554433322 22344443 54444433211 111 1223332  5568888998887776655443

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=95.31  E-value=0.13  Score=44.77  Aligned_cols=30  Identities=27%  Similarity=0.529  Sum_probs=23.7

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      |.|.|++|.+|+.+++.+.+. +. ++++ +++
T Consensus         1 ilItGatG~iG~~l~~~L~~~-g~~~v~~-~~~   31 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNER-GITDILV-VDN   31 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHc-CCceEEE-Eec
Confidence            579999999999999999875 44 5654 453

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]

Probab=95.30  E-value=0.087  Score=48.34  Aligned_cols=126  Identities=19%  Similarity=0.236  Sum_probs=72.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhc---------------------CCcEEEEEEec--CCCCcchhhhhcCC------
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKA---------------------RGMEVAGAIDS--HSVGEDIGMVCDME------   83 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~---------------------~~~eLvg~vd~--~~~g~d~g~l~g~~------   83 (220)
                      .+|+||+|+|- |+-.+.++.-+...                     .|.|+|+.+|.  .+.|+|+.+..-..      
T Consensus         3 ~~~vrv~iiG~-Gn~AssLvqgie~~k~~e~~~~~g~~~~~~~~~~~~dieivaafdvd~~KVg~dl~Eai~~~~n~~~~   81 (362)
T COG1260           3 TTMVRVAIIGV-GNCASSLVQGIEYYKAGEDEPVPGLMHRDEGGYKVEDIEIVAAFDVDARKVGKDLSEAIKAPPNVTSK   81 (362)
T ss_pred             cceEEEEEEec-cchHHHHHHHHHHHhccCCCccceeccccccCcCccceEEEEeecccHhhcChhHHHHHhcCCCCCce
Confidence            57899999996 88888787665432                     26789999984  45677776543210      


Q ss_pred             -----CCCCccc---------cCCHHHHHhc---cccCCCccEE-----------EEccC---chhHHHHHHHHHHCCCc
Q 027650           84 -----QPLEIPV---------MSDLTMVLGS---ISQSKARAVV-----------IDFTD---ASTVYDNVKQATAFGMR  132 (220)
Q Consensus        84 -----~~~gv~v---------~~dl~~~l~~---~~~~~~~DVV-----------IDfT~---p~~~~~~~~~al~~G~~  132 (220)
                           ...|+.+         ...+.+.+..   -.+....|++           +.|.+   ..+.+-++..+++.|++
T Consensus        82 ~~~~~~~~Gv~v~~g~~Ldg~~~~l~~~~~~~~~~~e~~~~dvv~vL~~~~tE~lvny~p~gs~~a~~~YA~aal~aG~a  161 (362)
T COG1260          82 IAPDVPKTGVKVRRGPTLDGEGLHLAEYIERIQEESEAEAVDVVVVLNVAKTEVLVNYLPVGSESASYFYAAAALAAGVA  161 (362)
T ss_pred             eecccccCCcEecccCCcCcccchhhhhcchhhcccccccccceeeecccCccccccccccchhHHHHHHHHHHHHcCCc
Confidence                 0111111         0112222220   0011123332           22222   23456678899999999


Q ss_pred             EEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          133 SVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       133 vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      .|=.+|-+...+ ..+.+.++++|+|++
T Consensus       162 fvN~~P~~iA~d-P~~~~~fee~g~pi~  188 (362)
T COG1260         162 FVNAIPVFIASD-PAWVELFEEKGLPIA  188 (362)
T ss_pred             eecccCccccCC-HHHHHHHHHcCCcee
Confidence            999998542211 236777888888887

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.29  E-value=0.17  Score=45.54  Aligned_cols=60  Identities=17%  Similarity=0.141  Sum_probs=41.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc-cccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ...+|+|+|. |+||+.+++.+.. =++++.+ +|+..  .+          .++ ..+.++++++.      ++|+|+.
T Consensus       121 ~gktvgIiG~-G~IG~~vA~~l~a-fG~~V~~-~~r~~--~~----------~~~~~~~~~l~ell~------~aDiv~~  179 (303)
T PRK06436        121 YNKSLGILGY-GGIGRRVALLAKA-FGMNIYA-YTRSY--VN----------DGISSIYMEPEDIMK------KSDFVLI  179 (303)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHH-CCCEEEE-ECCCC--cc----------cCcccccCCHHHHHh------hCCEEEE
Confidence            3469999996 9999999997764 4898875 45431  11          111 12568999986      7999884


Q ss_pred             cc
Q 027650          113 FT  114 (220)
Q Consensus       113 fT  114 (220)
                      ..
T Consensus       180 ~l  181 (303)
T PRK06436        180 SL  181 (303)
T ss_pred             CC
Confidence            43

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.28  E-value=0.048  Score=50.58  Aligned_cols=97  Identities=13%  Similarity=0.184  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhc-CCCCC----CccccCCHHHHHhccccCCCccE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL----EIPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~----gv~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      -+++|+|+ |.+++.+++++.. .|+++=+-+++++.  ..+..+.. +...+    .+.+.++.++++.      ++||
T Consensus       156 ~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~--~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~------~ADI  226 (379)
T PRK06199        156 KVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQ--KSLDSFATWVAETYPQITNVEVVDSIEEVVR------GSDI  226 (379)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCH--HHHHHHHHHHHHhcCCCceEEEeCCHHHHHc------CCCE
Confidence            48999996 9999999999887 56788888998742  11111110 00111    2566899999986      7999


Q ss_pred             EEEccCchh----HHHHH-HHHHHCCCcEE-EeCCCCC
Q 027650          110 VIDFTDAST----VYDNV-KQATAFGMRSV-VYVPHIQ  141 (220)
Q Consensus       110 VIDfT~p~~----~~~~~-~~al~~G~~vV-igTtG~~  141 (220)
                      |+=+|+...    ..+.+ ...++.|.|+. +|+-.++
T Consensus       227 VvtaT~s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~eld  264 (379)
T PRK06199        227 VTYCNSGETGDPSTYPYVKREWVKPGAFLLMPAACRID  264 (379)
T ss_pred             EEEccCCCCCCCCcCcEecHHHcCCCcEEecCCcccCC
Confidence            885453111    11222 33567898886 4443344

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.25  E-value=0.59  Score=43.47  Aligned_cols=142  Identities=18%  Similarity=0.152  Sum_probs=75.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-C-cchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-G-EDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g-~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVI  111 (220)
                      .+|.|+|+ |++|...++.+.+ .+.++++ .|.... . .....+.    ..|+.++  .+..+++.     ..+|+||
T Consensus         6 k~v~v~G~-g~~G~s~a~~l~~-~G~~V~~-~d~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~-----~~~d~vV   73 (447)
T PRK02472          6 KKVLVLGL-AKSGYAAAKLLHK-LGANVTV-NDGKPFSENPEAQELL----EEGIKVICGSHPLELLD-----EDFDLMV   73 (447)
T ss_pred             CEEEEEee-CHHHHHHHHHHHH-CCCEEEE-EcCCCccchhHHHHHH----hcCCEEEeCCCCHHHhc-----CcCCEEE
Confidence            47999998 8899999888775 5888776 464221 1 1112222    3355443  23444443     1489887


Q ss_pred             Ecc-CchhHHHHHHHHHHCCCcEE--------------EeCCCCC--HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHH
Q 027650          112 DFT-DASTVYDNVKQATAFGMRSV--------------VYVPHIQ--LETVSALSAFCDKASMGCLIAPTLSIGSILLQQ  174 (220)
Q Consensus       112 DfT-~p~~~~~~~~~al~~G~~vV--------------igTtG~~--~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~  174 (220)
                      --. .|.. .+.+..|.+.|++++              ||-||-+  --...-|..+-+..+.......|+  |..+.. 
T Consensus        74 ~s~gi~~~-~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gni--g~p~~~-  149 (447)
T PRK02472         74 KNPGIPYT-NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNI--GYPASE-  149 (447)
T ss_pred             ECCCCCCC-CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEccc--ChhhHH-
Confidence            332 1322 345666677777764              4445432  122234455555556666666774  443322 


Q ss_pred             HHHHhcCCCCCeEEEeccCCC
Q 027650          175 AAISASFHYKNVEIVESRPNA  195 (220)
Q Consensus       175 ~a~~~~~~~~diEIiE~HH~~  195 (220)
                      +....  ...|+-|+|.=+.+
T Consensus       150 ~~~~~--~~~~~~V~E~ss~~  168 (447)
T PRK02472        150 VAQKA--TADDTLVMELSSFQ  168 (447)
T ss_pred             HHhcC--CCCCEEEEEcCchh
Confidence            11111  12477778874433

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=95.23  E-value=0.2  Score=44.44  Aligned_cols=88  Identities=16%  Similarity=0.215  Sum_probs=55.0

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE-E
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV-V  110 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV-V  110 (220)
                      +..+.++.|.|||+++|+++++.+.. .+..|+-+..+.   +.+.++.           .++++...     ..+++ -
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~-~g~~liLvaR~~---~kL~~la-----------~~l~~~~~-----v~v~vi~   62 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLAR-RGYNLILVARRE---DKLEALA-----------KELEDKTG-----VEVEVIP   62 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCcH---HHHHHHH-----------HHHHHhhC-----ceEEEEE
Confidence            34556899999999999999999886 478888665432   1122221           12222111     13442 4


Q ss_pred             EEccCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          111 IDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      +|.+.|+............  .+.++|-.-|
T Consensus        63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG   93 (265)
T COG0300          63 ADLSDPEALERLEDELKERGGPIDVLVNNAG   93 (265)
T ss_pred             CcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence            5778888877766666666  5777765554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.15  E-value=0.11  Score=48.93  Aligned_cols=87  Identities=9%  Similarity=0.093  Sum_probs=53.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      --+|+|+|+ |.+|+.+++.+... +.+++. +|.+..  ......    ..|+.+. ++++++.      .+|+||++|
T Consensus       202 GktVvViG~-G~IG~~va~~ak~~-Ga~ViV-~d~d~~--R~~~A~----~~G~~~~-~~~e~v~------~aDVVI~at  265 (413)
T cd00401         202 GKVAVVAGY-GDVGKGCAQSLRGQ-GARVIV-TEVDPI--CALQAA----MEGYEVM-TMEEAVK------EGDIFVTTT  265 (413)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EECChh--hHHHHH----hcCCEEc-cHHHHHc------CCCEEEECC
Confidence            358999997 99999999987754 777654 665321  111111    2344332 4566664      789999988


Q ss_pred             CchhHHHH-HHHHHHCCCcEE-EeC
Q 027650          115 DASTVYDN-VKQATAFGMRSV-VYV  137 (220)
Q Consensus       115 ~p~~~~~~-~~~al~~G~~vV-igT  137 (220)
                      ........ ...+++.|.-++ +|-
T Consensus       266 G~~~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         266 GNKDIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             CCHHHHHHHHHhcCCCCcEEEEeCC
Confidence            65444433 355666665554 453

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=95.14  E-value=0.038  Score=51.07  Aligned_cols=130  Identities=16%  Similarity=0.179  Sum_probs=81.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhc-CCCCC------C-ccccC-----CHHHHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCD-MEQPL------E-IPVMS-----DLTMVL   98 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~------g-v~v~~-----dl~~~l   98 (220)
                      ..-+.|.||+|-.|+.+++.+..   .+++.+.-+-.+.   +.+.+++. ++.+.      . +.+.+     +++++.
T Consensus         5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~---~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~ema   81 (423)
T KOG2733|consen    5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNE---KKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMA   81 (423)
T ss_pred             eeeEEEEccccccceeeHHHHhhhhcccCceEEEecCCH---HHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHH
Confidence            46799999999999999998765   3455553322211   11222111 00011      1 22222     366665


Q ss_pred             hccccCCCccEEEEccCchhH--HHHHHHHHHCCCcEE--EeCCCCCHHHHHHHHHHhhhcCceEEEcCCC-----cHHH
Q 027650           99 GSISQSKARAVVIDFTDASTV--YDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIAPTL-----SIGS  169 (220)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~--~~~~~~al~~G~~vV--igTtG~~~e~~~~L~~aA~~~~v~vviapNf-----S~Gv  169 (220)
                      .      .+-|||.+.-|--+  ...+++|+++|.+-|  .|-|-|-+--..+-.+.|+++|+.|+-+-+|     -+|+
T Consensus        82 k------~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsaCGfDSIPaDlGv  155 (423)
T KOG2733|consen   82 K------QARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSACGFDSIPADLGV  155 (423)
T ss_pred             h------hhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEeecccCCCCcccee
Confidence            4      68899988777655  477899999999987  4444454444455678899999999977664     4677


Q ss_pred             HHHH
Q 027650          170 ILLQ  173 (220)
Q Consensus       170 ~ll~  173 (220)
                      +.++
T Consensus       156 ~f~~  159 (423)
T KOG2733|consen  156 MFLR  159 (423)
T ss_pred             eeeh
Confidence            5544

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=95.14  E-value=0.086  Score=48.38  Aligned_cols=101  Identities=17%  Similarity=0.126  Sum_probs=58.5

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCC--HHHHHhccccCCCccEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV  110 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVV  110 (220)
                      +...+|.|+|++|..|+..+..+... ++..+.++.++. ..+.-+-+|.   ..+.-|.+  ..+.+.+.. ..++|+|
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~-~~~~v~t~~s~e-~~~l~k~lGA---d~vvdy~~~~~~e~~kk~~-~~~~DvV  229 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHA-GAIKVVTACSKE-KLELVKKLGA---DEVVDYKDENVVELIKKYT-GKGVDVV  229 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhc-CCcEEEEEcccc-hHHHHHHcCC---cEeecCCCHHHHHHHHhhc-CCCccEE
Confidence            33468999999999999999877665 444444444321 2333332331   12222444  333333100 2469999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                      +||-...............|...++++.|
T Consensus       230 lD~vg~~~~~~~~~~l~~~g~~~~i~~~~  258 (347)
T KOG1198|consen  230 LDCVGGSTLTKSLSCLLKGGGGAYIGLVG  258 (347)
T ss_pred             EECCCCCccccchhhhccCCceEEEEecc
Confidence            99976655555555556666666767664

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.13  E-value=0.24  Score=45.47  Aligned_cols=96  Identities=20%  Similarity=0.247  Sum_probs=58.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhhcCCCCCCcccc--
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVM--   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g---------~l~g~~~~~gv~v~--   91 (220)
                      ..||.|+|+ |.+|..+++.+.. .++.=..++|.+.     .+       .|+|         .+..+.....+..+  
T Consensus        28 ~~~VlivG~-GGlGs~~a~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~  105 (355)
T PRK05597         28 DAKVAVIGA-GGLGSPALLYLAG-AGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR  105 (355)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence            358999998 9999999998875 5777777888531     01       1111         01011111112211  


Q ss_pred             ----CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                          ++..+.+.      ++|+|||++..-.. .-.-..|.++++|+|.|-.
T Consensus       106 ~i~~~~~~~~~~------~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~  151 (355)
T PRK05597        106 RLTWSNALDELR------DADVILDGSDNFDTRHLASWAAARLGIPHVWASI  151 (355)
T ss_pred             ecCHHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence                12234554      79999999854444 3455788999999997643

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=95.10  E-value=0.3  Score=39.64  Aligned_cols=85  Identities=22%  Similarity=0.253  Sum_probs=52.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEccC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (220)
                      ++.|+|+ |..|+.+++.+.+ .+++++|.+|.+...  .+.     .-.|+|++.+.+++....   .+.+ +++....
T Consensus         1 ~~~I~Ga-g~~g~~~~~~l~~-~g~~vvgfid~~~~~--~~~-----~i~g~pvlg~~~~l~~~~---~~~~~~iiai~~   68 (201)
T TIGR03570         1 KLVIIGA-GGHGRVVADIAED-SGWEIVGFLDDNPAL--QGT-----SVDGLPVLGGDEDLLRYP---PDEVDLVVAIGD   68 (201)
T ss_pred             CEEEEcC-CHHHHHHHHHHHh-CCCEEEEEEcCCccc--cCc-----ccCCccEECCHHHHhhhc---ccccEEEEEcCC
Confidence            5899997 9999999999875 589999999864210  111     123677776665543210   1234 4443334


Q ss_pred             chhHHHHHHHHHHCCCcE
Q 027650          116 ASTVYDNVKQATAFGMRS  133 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~v  133 (220)
                      +....+....+.+.+..+
T Consensus        69 ~~~~~~i~~~l~~~g~~~   86 (201)
T TIGR03570        69 NKLRRRLFEKLKAKGYRF   86 (201)
T ss_pred             HHHHHHHHHHHHhCCCcc
Confidence            444456666666666544

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=95.10  E-value=0.17  Score=46.16  Aligned_cols=128  Identities=20%  Similarity=0.279  Sum_probs=79.4

Q ss_pred             ccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCC---HHHHHhcccc
Q 027650           27 CSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---LTMVLGSISQ  103 (220)
Q Consensus        27 ~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~d---l~~~l~~~~~  103 (220)
                      ..++......||.+.| +|-.|++++-.+.. =++|++++ |+ +.+.++-.++..   .-|.-..|   +.+++++   
T Consensus         4 igt~~~~~a~kvmLLG-SGELGKEvaIe~QR-LG~eViAV-Dr-Y~~APAmqVAhr---s~Vi~MlD~~al~avv~r---   73 (394)
T COG0027           4 IGTPLRPQATKVMLLG-SGELGKEVAIEAQR-LGVEVIAV-DR-YANAPAMQVAHR---SYVIDMLDGDALRAVVER---   73 (394)
T ss_pred             ccCCCCCCCeEEEEec-CCccchHHHHHHHh-cCCEEEEe-cC-cCCChhhhhhhh---eeeeeccCHHHHHHHHHh---
Confidence            4566667778999999 59999999877654 59999974 54 222333333321   11111233   4455554   


Q ss_pred             CCCccEEEEccCchhH-HHHHHHHHHCCCcEEEe------------------------CCCC-CHHHHHHHHHHhhhcCc
Q 027650          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY------------------------VPHI-QLETVSALSAFCDKASM  157 (220)
Q Consensus       104 ~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVig------------------------TtG~-~~e~~~~L~~aA~~~~v  157 (220)
                       .+||.+|  .--++. .+.+...-+.|.+||=.                        |+.+ -.+..+++.+++++-|.
T Consensus        74 -ekPd~IV--pEiEAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAAeeLglpTs~Y~fa~s~~e~~~a~~~iGf  150 (394)
T COG0027          74 -EKPDYIV--PEIEAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAAEELGLPTSKYRFADSLEELRAAVEKIGF  150 (394)
T ss_pred             -hCCCeee--ehhhhhhHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHHHHhCCCCccccccccHHHHHHHHHHcCC
Confidence             5899877  222222 35555666777776621                        0111 12345678999999999


Q ss_pred             eEEEcCCCcH
Q 027650          158 GCLIAPTLSI  167 (220)
Q Consensus       158 ~vviapNfS~  167 (220)
                      |+++.|-||-
T Consensus       151 PcvvKPvMSS  160 (394)
T COG0027         151 PCVVKPVMSS  160 (394)
T ss_pred             Ceeccccccc
Confidence            9999999875

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.08  E-value=0.22  Score=42.13  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ..||+|+|+ |.||..++..+.. .++.=+-++|.+
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~-~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLAR-AGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHH-cCCCEEEEECCC
Confidence            358999998 9999999998876 477545577854

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.08  E-value=0.19  Score=45.32  Aligned_cols=61  Identities=15%  Similarity=0.226  Sum_probs=41.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .+|+|+|. |+||+.+++.+... |+++.+ +++..  +...   +..   ...-..++++++.      ++|+|+..
T Consensus       137 ~tvgIvG~-G~IG~~vA~~l~af-G~~V~~-~~~~~--~~~~---~~~---~~~~~~~l~e~l~------~aDvvv~~  197 (312)
T PRK15469        137 FTIGILGA-GVLGSKVAQSLQTW-GFPLRC-WSRSR--KSWP---GVQ---SFAGREELSAFLS------QTRVLINL  197 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EeCCC--CCCC---Cce---eecccccHHHHHh------cCCEEEEC
Confidence            58999996 99999999998864 898885 56421  1100   100   0111458899986      79998843

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=95.06  E-value=0.12  Score=42.76  Aligned_cols=148  Identities=11%  Similarity=0.131  Sum_probs=77.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|+ |..|+.++..+.. .+++++-...+.....+..+      ..|..+ .+++|+..      .+|+|+ .-
T Consensus         4 ~k~IAViGy-GsQG~a~AlNLrD-SG~~V~Vglr~~s~s~~~A~------~~Gf~v-~~~~eAv~------~aDvV~-~L   67 (165)
T PF07991_consen    4 GKTIAVIGY-GSQGHAHALNLRD-SGVNVIVGLREGSASWEKAK------ADGFEV-MSVAEAVK------KADVVM-LL   67 (165)
T ss_dssp             TSEEEEES--SHHHHHHHHHHHH-CC-EEEEEE-TTCHHHHHHH------HTT-EC-CEHHHHHH------C-SEEE-E-
T ss_pred             CCEEEEECC-ChHHHHHHHHHHh-CCCCEEEEecCCCcCHHHHH------HCCCee-ccHHHHHh------hCCEEE-Ee
Confidence            358999997 9999999999876 58888766654321111111      234444 37777775      799988 44


Q ss_pred             CchhH-----HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHHHHHHHHHHHHhcCCCCCeEE
Q 027650          115 DASTV-----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSILLQQAAISASFHYKNVEI  188 (220)
Q Consensus       115 ~p~~~-----~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~Gv~ll~~~a~~~~~~~~diEI  188 (220)
                      .|+..     .+.+...++.|..++. ..||+-- ...|.-   ..++-++ ++|. ++|..+=+.+.+  .+-.+-.=-
T Consensus        68 ~PD~~q~~vy~~~I~p~l~~G~~L~f-ahGfni~-~~~i~p---p~~vdV~mvAPK-gpG~~vR~~y~~--G~Gvp~l~A  139 (165)
T PF07991_consen   68 LPDEVQPEVYEEEIAPNLKPGATLVF-AHGFNIH-YGLIKP---PKDVDVIMVAPK-GPGHLVRREYVE--GRGVPALIA  139 (165)
T ss_dssp             S-HHHHHHHHHHHHHHHS-TT-EEEE-SSSHHHH-CTTS------TTSEEEEEEES-SSCHHHHHHHHC--CTS--EEEE
T ss_pred             CChHHHHHHHHHHHHhhCCCCCEEEe-CCcchhh-cCcccC---CCCCeEEEEecC-CCChHHHHHHHc--CCCceEEEE
Confidence            44433     2555667888887775 5687642 122221   2335555 5566 788844333332  111233322


Q ss_pred             EeccCCCCCCCCchhhHHHHHHhhh
Q 027650          189 VESRPNARMQLKSPTTSPTLVRSTT  213 (220)
Q Consensus       189 iE~HH~~K~DaPSGTA~~~~~~~~~  213 (220)
                      ++      .| +||.|+++...-++
T Consensus       140 V~------qD-~sg~A~~~ala~A~  157 (165)
T PF07991_consen  140 VH------QD-ASGKAKELALAYAK  157 (165)
T ss_dssp             EE------E--SSS-HHHHHHHHHH
T ss_pred             EE------EC-CCchHHHHHHHHHH
Confidence            33      46 58999986665443

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.04  E-value=0.18  Score=45.02  Aligned_cols=101  Identities=13%  Similarity=0.061  Sum_probs=52.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CCcchhhhhcCCCCCCccccCCHHHHHhccccCCCc
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR  107 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (220)
                      +.+|||+|+|+ |.||..++..+.+. +.++..+.....     .|.......+-.....+.++++.++ .      ..+
T Consensus         3 ~~~m~I~IiG~-GaiG~~lA~~L~~~-g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------~~~   73 (313)
T PRK06249          3 SETPRIGIIGT-GAIGGFYGAMLARA-GFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAED-M------PPC   73 (313)
T ss_pred             CcCcEEEEECC-CHHHHHHHHHHHHC-CCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhh-c------CCC
Confidence            34579999997 99999999888764 666665443210     1111000000000001223444443 2      368


Q ss_pred             cEEEEccCchhHH---HHHHHHHHCCCcEEEeCCCCCH
Q 027650          108 AVVIDFTDASTVY---DNVKQATAFGMRSVVYVPHIQL  142 (220)
Q Consensus       108 DVVIDfT~p~~~~---~~~~~al~~G~~vVigTtG~~~  142 (220)
                      |+||-++......   +.+...+..+..+|.-.-|+..
T Consensus        74 D~vilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~  111 (313)
T PRK06249         74 DWVLVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGV  111 (313)
T ss_pred             CEEEEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCc
Confidence            9988665544333   3333444445556655558764

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.04  E-value=0.061  Score=48.29  Aligned_cols=91  Identities=7%  Similarity=0.016  Sum_probs=60.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCC--ccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -+++|+|+ |..|+.+++++.....++=+-+++++.  ..+..+.. +.+.++  +.+.+++++++.      ++|||+=
T Consensus       118 ~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~f~~~~~~~~~~~v~~~~~~~eav~------~aDIV~t  188 (301)
T PRK06407        118 ENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNF--DHARAFAERFSKEFGVDIRPVDNAEAALR------DADTITS  188 (301)
T ss_pred             cEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEE
Confidence            58999996 999999999999888888888888642  12222211 011223  455789999986      8999995


Q ss_pred             ccCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650          113 FTDASTVYDNV-KQATAFGMRSV-VYV  137 (220)
Q Consensus       113 fT~p~~~~~~~-~~al~~G~~vV-igT  137 (220)
                      .|+ ... +.+ ...++.|.|+. ||.
T Consensus       189 aT~-s~~-P~~~~~~l~pg~hV~aiGs  213 (301)
T PRK06407        189 ITN-SDT-PIFNRKYLGDEYHVNLAGS  213 (301)
T ss_pred             ecC-CCC-cEecHHHcCCCceEEecCC
Confidence            443 221 222 23457888886 454

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.01  E-value=0.14  Score=45.52  Aligned_cols=124  Identities=20%  Similarity=0.151  Sum_probs=67.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCC---CCccccCCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQP---LEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~---~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      .||.|+|+ |++|+.++..+... ++.=+-+++++.  ..+..+... ...   ..+...+++.+.+.      ++|+||
T Consensus       128 k~vlIlGa-GGaaraia~aL~~~-G~~~I~I~nR~~--~ka~~la~~l~~~~~~~~~~~~~~~~~~~~------~aDiVI  197 (284)
T PRK12549        128 ERVVQLGA-GGAGAAVAHALLTL-GVERLTIFDVDP--ARAAALADELNARFPAARATAGSDLAAALA------AADGLV  197 (284)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHc-CCCEEEEECCCH--HHHHHHHHHHHhhCCCeEEEeccchHhhhC------CCCEEE
Confidence            58999997 99999999988764 664466777642  122222210 000   11112344555553      799999


Q ss_pred             EccCchhH----HHHHHHHHHCCCcE--EEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          112 DFTDASTV----YDNVKQATAFGMRS--VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       112 DfT~p~~~----~~~~~~al~~G~~v--VigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      ..|+....    ...-...++.+.-+  ++-.|.-     ..|.+.|+++|.+++-    .+++ |+.|.+.+.
T Consensus       198 naTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~-----T~ll~~A~~~G~~~~~----G~~M-L~~Qa~~~f  261 (284)
T PRK12549        198 HATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLE-----TELLRAARALGCRTLD----GGGM-AVFQAVDAF  261 (284)
T ss_pred             ECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCC-----CHHHHHHHHCCCeEec----CHHH-HHHHHHHHH
Confidence            87753210    01111223333322  1223332     3477888888877654    5566 555665444

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.00  E-value=0.26  Score=44.76  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=27.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      -+|.||+|+|+.|++|+.++-.+....-..-+..+|.
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            3567999999889999999988875544433445665

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.00  E-value=0.25  Score=43.86  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=25.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..+|+|+|+ |.+|..+++.+... ++.=+-++|.
T Consensus        30 ~s~VlVvG~-GGVGs~vae~Lar~-GVg~itLiD~   62 (268)
T PRK15116         30 DAHICVVGI-GGVGSWAAEALART-GIGAITLIDM   62 (268)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHc-CCCEEEEEeC
Confidence            358999997 99999999998764 6544556774

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=94.98  E-value=0.23  Score=46.25  Aligned_cols=59  Identities=17%  Similarity=0.080  Sum_probs=41.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ..+|||+|+ |+||+.+++.+... |+++.+ +|+.....          . +..-+.++++++.      .+|+|+-.
T Consensus       116 gktvGIIG~-G~IG~~va~~l~a~-G~~V~~-~Dp~~~~~----------~-~~~~~~~l~ell~------~aDiV~lh  174 (381)
T PRK00257        116 ERTYGVVGA-GHVGGRLVRVLRGL-GWKVLV-CDPPRQEA----------E-GDGDFVSLERILE------ECDVISLH  174 (381)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-ECCccccc----------c-cCccccCHHHHHh------hCCEEEEe
Confidence            358999997 99999999998764 898875 56532110          0 1112568899886      68988843

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=94.98  E-value=0.2  Score=43.32  Aligned_cols=30  Identities=20%  Similarity=0.283  Sum_probs=25.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKAR-GMEVAGA   66 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~   66 (220)
                      ||.|+|++|.+|+.+++.+.+.. +.+++++
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~   31 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVL   31 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEe
Confidence            68999999999999999987753 4788764

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=94.97  E-value=0.27  Score=45.26  Aligned_cols=139  Identities=13%  Similarity=0.160  Sum_probs=83.1

Q ss_pred             ccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhc----CCc-EEEEEEec--CCCC--cchhh-----------hhcC
Q 027650           23 RFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKA----RGM-EVAGAIDS--HSVG--EDIGM-----------VCDM   82 (220)
Q Consensus        23 ~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~-eLvg~vd~--~~~g--~d~g~-----------l~g~   82 (220)
                      ++...+..+..+++||.|+|. |+=|+.+++.+.+.    +.+ .-|..+..  ...|  +.+.+           +.|+
T Consensus         9 ~~~~~~~~~~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~   87 (372)
T KOG2711|consen    9 ESIRNLGKAERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGI   87 (372)
T ss_pred             hhhhccCchhcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCc
Confidence            344444555566799999995 99999999987643    211 11222221  2223  12222           2233


Q ss_pred             CCCCCccccCCHHHHHhccccCCCccEEEEccCchhHH----HHHHHHHHCCCcEEEeCCCCCHH-H---HHHHHHH---
Q 027650           83 EQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVY----DNVKQATAFGMRSVVYVPHIQLE-T---VSALSAF---  151 (220)
Q Consensus        83 ~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~----~~~~~al~~G~~vVigTtG~~~e-~---~~~L~~a---  151 (220)
                      .-+.++...+|+.++..      ++|++| |..|+...    +.+.-.++.+.+.|+-+-|++.. +   +..+.+.   
T Consensus        88 ~lP~NvvAv~dl~ea~~------dADilv-f~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~  160 (372)
T KOG2711|consen   88 KLPENVVAVPDLVEAAK------DADILV-FVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR  160 (372)
T ss_pred             cCCCCeEecchHHHHhc------cCCEEE-EeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH
Confidence            23456677889999885      799988 88776553    56667788888888766677531 1   2223333   


Q ss_pred             hhhcCceEEEcCCCcHHH
Q 027650          152 CDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       152 A~~~~v~vviapNfS~Gv  169 (220)
                      +-.-...++.-||++.-+
T Consensus       161 ~lgI~~~vL~GaNiA~EV  178 (372)
T KOG2711|consen  161 ALGIPCSVLMGANIASEV  178 (372)
T ss_pred             HhCCCceeecCCchHHHH
Confidence            223344566667777666

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]

Probab=94.97  E-value=0.15  Score=47.21  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID   68 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd   68 (220)
                      |.|+.|.|.||-+|..-.+.+.++|+ ++|++...
T Consensus         1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~a   35 (385)
T COG0743           1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAA   35 (385)
T ss_pred             CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEec
Confidence            57999999999999999999999887 69999876

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=94.96  E-value=0.12  Score=49.81  Aligned_cols=65  Identities=18%  Similarity=0.227  Sum_probs=45.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -.+|+|+|. |+||+.+++.+... ++++.+ +|+... .+..      ...++...+++++++.      .+|+|+-..
T Consensus       138 gktvgIiG~-G~IG~~vA~~l~~f-G~~V~~-~d~~~~-~~~~------~~~g~~~~~~l~ell~------~aDvV~l~l  201 (525)
T TIGR01327       138 GKTLGVIGL-GRIGSIVAKRAKAF-GMKVLA-YDPYIS-PERA------EQLGVELVDDLDELLA------RADFITVHT  201 (525)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCEEEE-ECCCCC-hhHH------HhcCCEEcCCHHHHHh------hCCEEEEcc
Confidence            358999996 99999999998764 888875 565311 1111      1235555578999986      799988544


Q ss_pred             C
Q 027650          115 D  115 (220)
Q Consensus       115 ~  115 (220)
                      +
T Consensus       202 P  202 (525)
T TIGR01327       202 P  202 (525)
T ss_pred             C
Confidence            3

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function

Probab=94.95  E-value=0.42  Score=41.25  Aligned_cols=147  Identities=14%  Similarity=0.102  Sum_probs=95.8

Q ss_pred             CCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc-CchhHHH
Q 027650           44 VKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYD  121 (220)
Q Consensus        44 ~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT-~p~~~~~  121 (220)
                      .|.=|.++++.+.+.+++. .+.+++.+.   .+.+           ..++.++.|.++   .++|++|.++ +|+..++
T Consensus         5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~---~l~e-----------fId~pee~Lp~i---~~~Dl~I~y~lHPDl~~~   67 (217)
T PF02593_consen    5 DGKYGERVIENIKNYFDFCRSVIVYEIPE---DLPE-----------FIDDPEEYLPKI---PEADLLIAYGLHPDLTYE   67 (217)
T ss_pred             eCcchHHHHHHHHhcCCCCceEEEEeCCc---cccc-----------cccChHHHccCC---CCCCEEEEeccCchhHHH
Confidence            4888999999999988876 344444321   1111           134556665532   5899999876 7999999


Q ss_pred             HHHHHHHCCCcEEEeCCCCC--HHHHHHHHHHhhhcCceEEEcCCC-cH---HHHHHHHHHHHhcCCCCCeEE-Ee----
Q 027650          122 NVKQATAFGMRSVVYVPHIQ--LETVSALSAFCDKASMGCLIAPTL-SI---GSILLQQAAISASFHYKNVEI-VE----  190 (220)
Q Consensus       122 ~~~~al~~G~~vVigTtG~~--~e~~~~L~~aA~~~~v~vviapNf-S~---Gv~ll~~~a~~~~~~~~diEI-iE----  190 (220)
                      ..+.+.+.|...||.- +++  +...+.|++.+++.|+-+.....| |+   |--.+.+|+..+.+  +-+|| ++    
T Consensus        68 l~~~~~e~g~kavIvp-~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGk--P~~ei~v~~~~I  144 (217)
T PF02593_consen   68 LPEIAKEAGVKAVIVP-SESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGK--PKVEIEVENGKI  144 (217)
T ss_pred             HHHHHHHcCCCEEEEe-cCCCccchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHHHhCC--ceEEEEecCCcE
Confidence            9999999998888643 332  345667888899988878764332 22   33457788877654  34444 22    


Q ss_pred             ccCCCCCCCCchhhHHHHHH
Q 027650          191 SRPNARMQLKSPTTSPTLVR  210 (220)
Q Consensus       191 ~HH~~K~DaPSGTA~~~~~~  210 (220)
                      ..=+=..+||=|.+.-++.+
T Consensus       145 ~~V~VlR~aPCGsT~~vAk~  164 (217)
T PF02593_consen  145 KDVKVLRSAPCGSTWFVAKR  164 (217)
T ss_pred             EEEEEEecCCCccHHHHHHH
Confidence            11222468999988865544

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=94.94  E-value=0.19  Score=44.13  Aligned_cols=123  Identities=20%  Similarity=0.253  Sum_probs=73.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-------cCCHHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-------~~dl~~~l~~~~~~~~  106 (220)
                      +|++|.|.|+| .=|+.+++.+.+. +..+..-+..+. |. ..       ..++++       .+++.+.+.+    .+
T Consensus         1 ~~~~IlvlgGT-~egr~la~~L~~~-g~~v~~Svat~~-g~-~~-------~~~~~v~~G~l~~~~~l~~~l~~----~~   65 (248)
T PRK08057          1 MMPRILLLGGT-SEARALARALAAA-GVDIVLSLAGRT-GG-PA-------DLPGPVRVGGFGGAEGLAAYLRE----EG   65 (248)
T ss_pred             CCceEEEEech-HHHHHHHHHHHhC-CCeEEEEEccCC-CC-cc-------cCCceEEECCCCCHHHHHHHHHH----CC
Confidence            46789999986 5699999888765 676665444332 22 11       112222       2456666654    68


Q ss_pred             ccEEEEccCchhHH--HH-HHHHHHCCCcEE-EeCCCCC---------HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHH
Q 027650          107 RAVVIDFTDASTVY--DN-VKQATAFGMRSV-VYVPHIQ---------LETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (220)
Q Consensus       107 ~DVVIDfT~p~~~~--~~-~~~al~~G~~vV-igTtG~~---------~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~  173 (220)
                      +++|||.|+|-+..  ++ ...|.+.|+|.+ ..=+.+.         -+..++..+++.+. -.+++    .+|+.-+.
T Consensus        66 i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~~-~~vll----ttGsk~l~  140 (248)
T PRK08057         66 IDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAPF-RRVLL----TTGRQPLA  140 (248)
T ss_pred             CCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhcc-CCEEE----ecCcchHH
Confidence            99999999996652  44 478888999987 3323221         11233333333333 35666    66776555


Q ss_pred             HHH
Q 027650          174 QAA  176 (220)
Q Consensus       174 ~~a  176 (220)
                      .+.
T Consensus       141 ~f~  143 (248)
T PRK08057        141 HFA  143 (248)
T ss_pred             HHh
Confidence            554

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=94.93  E-value=0.35  Score=45.00  Aligned_cols=60  Identities=20%  Similarity=0.221  Sum_probs=42.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|||+|. |+||+.+++.+... |+++.+ +|+...  +.+       . . ..+.++++++.      .+|+|+-.+
T Consensus       116 gktvGIIG~-G~IG~~vA~~l~a~-G~~V~~-~dp~~~--~~~-------~-~-~~~~~L~ell~------~sDiI~lh~  175 (378)
T PRK15438        116 DRTVGIVGV-GNVGRRLQARLEAL-GIKTLL-CDPPRA--DRG-------D-E-GDFRSLDELVQ------EADILTFHT  175 (378)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHC-CCEEEE-ECCccc--ccc-------c-c-cccCCHHHHHh------hCCEEEEeC
Confidence            459999997 99999999998765 899886 565321  100       0 1 12568999986      689888433

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=94.91  E-value=0.097  Score=49.22  Aligned_cols=86  Identities=21%  Similarity=0.262  Sum_probs=57.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ...||.|+|+ |-||..+++.+... ++.-+-++.++.  ..+.+++.   .++  +.-++++.+.+.      ++||||
T Consensus       177 ~~~~vlvIGA-Gem~~lva~~L~~~-g~~~i~IaNRT~--erA~~La~---~~~~~~~~l~el~~~l~------~~DvVi  243 (414)
T COG0373         177 KDKKVLVIGA-GEMGELVAKHLAEK-GVKKITIANRTL--ERAEELAK---KLGAEAVALEELLEALA------EADVVI  243 (414)
T ss_pred             ccCeEEEEcc-cHHHHHHHHHHHhC-CCCEEEEEcCCH--HHHHHHHH---HhCCeeecHHHHHHhhh------hCCEEE
Confidence            3457999998 99999999999875 666666776643  23334442   333  233566677775      799999


Q ss_pred             EccC-chh--HHHHHHHHHHCCCc
Q 027650          112 DFTD-AST--VYDNVKQATAFGMR  132 (220)
Q Consensus       112 DfT~-p~~--~~~~~~~al~~G~~  132 (220)
                      -.|. |+.  ..+.+..+++....
T Consensus       244 ssTsa~~~ii~~~~ve~a~~~r~~  267 (414)
T COG0373         244 SSTSAPHPIITREMVERALKIRKR  267 (414)
T ss_pred             EecCCCccccCHHHHHHHHhcccC
Confidence            6652 333  35777888777666

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=94.89  E-value=1.3  Score=40.21  Aligned_cols=71  Identities=15%  Similarity=0.171  Sum_probs=41.9

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---Cc--chhhhhcC-CCCCCccccCCHHHHHhccccCC
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---GE--DIGMVCDM-EQPLEIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g~--d~g~l~g~-~~~~gv~v~~dl~~~l~~~~~~~  105 (220)
                      ..+.||+|+|+ |.||..++..+.. .++ + +.++|.+..   |+  |....... +....+..+.|+++ +.      
T Consensus         4 ~~~~KI~IIGa-G~vG~~ia~~la~-~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l~------   73 (321)
T PTZ00082          4 IKRRKISLIGS-GNIGGVMAYLIVL-KNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED-IA------   73 (321)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHh-CCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH-hC------
Confidence            34569999997 9999999887664 454 7 778885321   11  11111110 00123444578864 43      


Q ss_pred             CccEEEEc
Q 027650          106 ARAVVIDF  113 (220)
Q Consensus       106 ~~DVVIDf  113 (220)
                      ++|+||..
T Consensus        74 ~aDiVI~t   81 (321)
T PTZ00082         74 GSDVVIVT   81 (321)
T ss_pred             CCCEEEEC
Confidence            89998853

>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase

Probab=94.87  E-value=0.39  Score=44.96  Aligned_cols=86  Identities=20%  Similarity=0.268  Sum_probs=59.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH---HHHhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT---MVLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~---~~l~~~~~~~~~DVV  110 (220)
                      -|+.|+|+ |..|..+++.+.+++  +++++|.+|.+...  ...      ..|+|+..+.+   +.+.+    .++|.|
T Consensus       126 ~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~--~~~------i~g~pVlg~~~~l~~~i~~----~~id~V  192 (445)
T TIGR03025       126 RRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSD--RVE------VAGLPVLGKLDDLVELVRA----HRVDEV  192 (445)
T ss_pred             CcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCccc--ccc------cCCCcccCCHHHHHHHHHh----CCCCEE
Confidence            57999996 999999999998765  58999999853211  111      23677765554   44443    578876


Q ss_pred             EEccCch----hHHHHHHHHHHCCCcEEE
Q 027650          111 IDFTDAS----TVYDNVKQATAFGMRSVV  135 (220)
Q Consensus       111 IDfT~p~----~~~~~~~~al~~G~~vVi  135 (220)
                      +- +.|.    ...+.+..|.+.|+.+.+
T Consensus       193 iI-a~p~~~~~~~~~ll~~~~~~gv~V~~  220 (445)
T TIGR03025       193 II-ALPLSEEARILELLLQLRDLGVDVRL  220 (445)
T ss_pred             EE-ecCcccHHHHHHHHHHHHhcCCEEEE
Confidence            63 4333    234667888899998876

Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.86  E-value=0.31  Score=41.52  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=27.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ..||+|+|+ |.+|..+++.+... ++.=+.++|.+
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~~-Gvg~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALARS-GVGNLKLVDFD   61 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence            358999998 99999999998764 77656677853

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.85  E-value=0.13  Score=49.55  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=26.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..||+|+|+ |.||+.++..+... +++++ ++|+
T Consensus         5 ~~kV~VIGa-G~MG~gIA~~la~a-G~~V~-l~d~   36 (503)
T TIGR02279         5 VVTVAVIGA-GAMGAGIAQVAASA-GHQVL-LYDI   36 (503)
T ss_pred             ccEEEEECc-CHHHHHHHHHHHhC-CCeEE-EEeC
Confidence            358999997 99999999988764 88887 5675

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=94.84  E-value=0.23  Score=45.62  Aligned_cols=147  Identities=17%  Similarity=0.128  Sum_probs=88.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh------cCC-CCCCccccCCHHHHHhccccCCCcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC------DME-QPLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~------g~~-~~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      .-+.|+||+|..|+.+++.+..+ +...  +    ..|++.+.+-      |.. ..+++-+-.-++++++      ..+
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~-g~~~--a----LAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~------~~~   73 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLARE-GLTA--A----LAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMAS------RTQ   73 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHc-CCch--h----hccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHh------cce
Confidence            46899999999999999998764 4444  1    2234333332      321 0111111223455554      799


Q ss_pred             EEEEccCchhH--HHHHHHHHHCCCcEEEeCCCCC--HHHHHHH-HHHhhhcCceEEEcCCC-----cHHHHHHHHHHHH
Q 027650          109 VVIDFTDASTV--YDNVKQATAFGMRSVVYVPHIQ--LETVSAL-SAFCDKASMGCLIAPTL-----SIGSILLQQAAIS  178 (220)
Q Consensus       109 VVIDfT~p~~~--~~~~~~al~~G~~vVigTtG~~--~e~~~~L-~~aA~~~~v~vviapNf-----S~Gv~ll~~~a~~  178 (220)
                      ||+.+.-|-..  ...++.|+.+|.+..= -||--  =|+.-.+ .+-|++.|+.|+-+-+|     -+|+.-+.+   +
T Consensus        74 VVlncvGPyt~~g~plv~aC~~~GTdY~D-iTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl~v~~l~~---~  149 (382)
T COG3268          74 VVLNCVGPYTRYGEPLVAACAAAGTDYAD-ITGEIMFFENSIDLYHAQAADAGARIIPGCGFDSIPSDLGVYALLK---Q  149 (382)
T ss_pred             EEEeccccccccccHHHHHHHHhCCCeee-ccccHHHHHHHHHHHHHHHHhcCCEEeccCCCCcCccchHHHHHHH---h
Confidence            99988777666  4889999999999983 34421  1333334 77788888888866555     344433322   2


Q ss_pred             hcCCCCCeEEEeccCCCCCCCC
Q 027650          179 ASFHYKNVEIVESRPNARMQLK  200 (220)
Q Consensus       179 ~~~~~~diEIiE~HH~~K~DaP  200 (220)
                      .. ..+-=|.+-.|-.-+-+.-
T Consensus       150 ~~-~d~~~~~~~t~l~l~s~t~  170 (382)
T COG3268         150 AL-PDGTEELIATHLALGSFTG  170 (382)
T ss_pred             hC-cccccchhhhheeeeeccc
Confidence            22 2334456677766666655

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.82  E-value=0.2  Score=47.14  Aligned_cols=40  Identities=25%  Similarity=0.423  Sum_probs=31.5

Q ss_pred             CCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ++++..+..|.|+|++|+.|+.+++.+.+. ++.+-+++..
T Consensus        73 ~~~~~~~~~VlVvGatG~vG~~iv~~llkr-gf~vra~VRd  112 (411)
T KOG1203|consen   73 NNNSKKPTTVLVVGATGKVGRRIVKILLKR-GFSVRALVRD  112 (411)
T ss_pred             CCCCCCCCeEEEecCCCchhHHHHHHHHHC-CCeeeeeccC
Confidence            344456689999999999999999998875 6777766643

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=94.82  E-value=0.14  Score=44.94  Aligned_cols=32  Identities=22%  Similarity=0.215  Sum_probs=27.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .||.|.|++|.+|+.+++.+.+. +.++++...
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~~-g~~V~~~~r   36 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQR-GYTVKATVR   36 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHHC-CCEEEEEEc
Confidence            58999999999999999998875 788887664

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=94.81  E-value=0.22  Score=44.04  Aligned_cols=31  Identities=19%  Similarity=0.368  Sum_probs=26.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |||.|.|++|.+|+.+++.+.+. +.+++++.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~   31 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILD   31 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHC-CCeEEEEe
Confidence            58999999999999999988764 78888753

>PLN02650 dihydroflavonol-4-reductase

Probab=94.79  E-value=0.12  Score=46.31  Aligned_cols=34  Identities=24%  Similarity=0.318  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      +..+|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~-G~~V~~~~r   37 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLER-GYTVRATVR   37 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHC-CCEEEEEEc
Confidence            4468999999999999999999874 788887654

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=94.74  E-value=0.14  Score=46.52  Aligned_cols=73  Identities=26%  Similarity=0.362  Sum_probs=46.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CC--CCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQ--PLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~--~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      |+|.|.|+.|.+|+..+..+.+ .+.++| ++|+-..|.... +... ..  ..++.-..-+++++++    .++|.||.
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~-~G~~vv-V~DNL~~g~~~~-v~~~~~~f~~gDi~D~~~L~~vf~~----~~idaViH   73 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLK-TGHEVV-VLDNLSNGHKIA-LLKLQFKFYEGDLLDRALLTAVFEE----NKIDAVVH   73 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHH-CCCeEE-EEecCCCCCHHH-hhhccCceEEeccccHHHHHHHHHh----cCCCEEEE
Confidence            5899999999999999999887 688877 577533333211 1100 00  0011112246777775    68999999


Q ss_pred             ccC
Q 027650          113 FTD  115 (220)
Q Consensus       113 fT~  115 (220)
                      |+.
T Consensus        74 FAa   76 (329)
T COG1087          74 FAA   76 (329)
T ss_pred             Ccc
Confidence            963

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.70  E-value=0.43  Score=43.48  Aligned_cols=105  Identities=17%  Similarity=0.130  Sum_probs=59.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -.++||+|. ||+|+.+++.+. -=++++.. .++... ....+      ..+.. |-++++++.      +.|+|+...
T Consensus       146 gktvGIiG~-GrIG~avA~r~~-~Fgm~v~y-~~~~~~-~~~~~------~~~~~-y~~l~ell~------~sDii~l~~  208 (324)
T COG1052         146 GKTLGIIGL-GRIGQAVARRLK-GFGMKVLY-YDRSPN-PEAEK------ELGAR-YVDLDELLA------ESDIISLHC  208 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCCCEEEE-ECCCCC-hHHHh------hcCce-eccHHHHHH------hCCEEEEeC
Confidence            369999995 999999999887 45888876 444321 11111      22233 445999997      799988655


Q ss_pred             Cc--hhH-HHHHHHHHHCCCcE-EEeCC-CCCHHHHHHHHHHhhhcCc
Q 027650          115 DA--STV-YDNVKQATAFGMRS-VVYVP-HIQLETVSALSAFCDKASM  157 (220)
Q Consensus       115 ~p--~~~-~~~~~~al~~G~~v-VigTt-G~~~e~~~~L~~aA~~~~v  157 (220)
                      +.  +.. .=+.+.....+..+ +|-|- |---++ +.|.++-++..+
T Consensus       209 Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe-~ALi~AL~~g~i  255 (324)
T COG1052         209 PLTPETRHLINAEELAKMKPGAILVNTARGGLVDE-QALIDALKSGKI  255 (324)
T ss_pred             CCChHHhhhcCHHHHHhCCCCeEEEECCCccccCH-HHHHHHHHhCCc
Confidence            42  222 22233334444433 34444 432232 345555555444

>PRK08177 short chain dehydrogenase; Provisional

Probab=94.69  E-value=0.21  Score=41.66  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=27.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      |.+|.|.|++|.+|+.+++.+.+. +.+|+.+..
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~-G~~V~~~~r   33 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLER-GWQVTATVR   33 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhC-CCEEEEEeC
Confidence            457999999999999999998864 788876543

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.67  E-value=0.42  Score=44.44  Aligned_cols=96  Identities=19%  Similarity=0.276  Sum_probs=59.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhhcCCCCCCccc--c
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPV--M   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g---------~l~g~~~~~gv~v--~   91 (220)
                      ..||.|+|+ |.+|..++..+.. .++.=+.++|.+.     .+       .|+|         .+..+  ...+.+  +
T Consensus        42 ~~~VlviG~-GGlGs~va~~La~-~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~--np~v~i~~~  117 (392)
T PRK07878         42 NARVLVIGA-GGLGSPTLLYLAA-AGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI--NPLVNVRLH  117 (392)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHH-cCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh--CCCcEEEEE
Confidence            358999998 9999999999875 4776667888421     01       1111         01111  112222  1


Q ss_pred             ------CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-CC
Q 027650           92 ------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI  140 (220)
Q Consensus        92 ------~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G~  140 (220)
                            .+..+++.      ++|+|||++..... ...-..|.++|+|+|.|.. |+
T Consensus       118 ~~~i~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~  168 (392)
T PRK07878        118 EFRLDPSNAVELFS------QYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRF  168 (392)
T ss_pred             eccCChhHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccC
Confidence                  12334553      79999998754333 4555889999999998765 54

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.66  E-value=1.7  Score=40.55  Aligned_cols=141  Identities=16%  Similarity=0.209  Sum_probs=70.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC-C-HHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-D-LTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~-d-l~~~l~~~~~~~~~DVVIDf  113 (220)
                      .||.|+|. |++|..+++.+.+ .+.++++ +|....-....++-..  ..|+.++. . .+..+.      ++|+|| .
T Consensus         6 ~~~~v~G~-g~~G~~~a~~l~~-~g~~v~~-~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~~------~~d~vv-~   73 (445)
T PRK04308          6 KKILVAGL-GGTGISMIAYLRK-NGAEVAA-YDAELKPERVAQIGKM--FDGLVFYTGRLKDALDN------GFDILA-L   73 (445)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEEE-EeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHHh------CCCEEE-E
Confidence            48999997 9999999888765 5788765 5642211111222100  12555432 2 222232      789888 4


Q ss_pred             cC--chhHHHHHHHHHHCCCcEE-----------------EeCCCCC-H-HHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650          114 TD--ASTVYDNVKQATAFGMRSV-----------------VYVPHIQ-L-ETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       114 T~--p~~~~~~~~~al~~G~~vV-----------------igTtG~~-~-e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                      |+  |.. .+.++.|.++|++++                 |+-||-+ + -...-|..+-+..|.......|+  |..++
T Consensus        74 spgi~~~-~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni--G~~~~  150 (445)
T PRK04308         74 SPGISER-QPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI--GTPVL  150 (445)
T ss_pred             CCCCCCC-CHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc--cHHHH
Confidence            43  322 234455555555542                 3444431 1 12233444444555555666774  44333


Q ss_pred             HHHHHHhcCCCCCeEEEecc
Q 027650          173 QQAAISASFHYKNVEIVESR  192 (220)
Q Consensus       173 ~~~a~~~~~~~~diEIiE~H  192 (220)
                      ..+.... +...|+-|+|.=
T Consensus       151 ~~~~~~~-~~~~d~~VlE~~  169 (445)
T PRK04308        151 EAELQRE-GKKADVWVLELS  169 (445)
T ss_pred             HHHHhhc-CCCCcEEEEEeC
Confidence            3222111 123577777764

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=94.62  E-value=0.094  Score=48.98  Aligned_cols=121  Identities=16%  Similarity=0.077  Sum_probs=87.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-----ccC---CHHHHHhccccCCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-----VMS---DLTMVLGSISQSKA  106 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-----v~~---dl~~~l~~~~~~~~  106 (220)
                      +-+|.+.|+ |++-+-.++.+....++++.-+++..   +++.++..   ..++.     +.+   .++...      .+
T Consensus         2 ~~~vlllgs-g~v~~p~~d~ls~~~dv~vtva~~~~---~~~~~~~~---~~~~~av~ldv~~~~~~L~~~v------~~   68 (445)
T KOG0172|consen    2 KKGVLLLGS-GFVSRPVADFLSRKKDVNVTVASRTL---KDAEALVK---GINIKAVSLDVADEELALRKEV------KP   68 (445)
T ss_pred             CcceEEecC-ccccchHHHHHhhcCCceEEEehhhH---HHHHHHhc---CCCccceEEEccchHHHHHhhh------cc
Confidence            458999996 99999999999999999999888753   23333332   11111     111   222333      36


Q ss_pred             ccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH
Q 027650          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~  170 (220)
                      -|+++-.++...+.-.++.|..++.++|  |+.+-..+.++|++.+...|+-++=--.+-+|+-
T Consensus        69 ~D~viSLlP~t~h~lVaK~~i~~~~~~v--tsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGid  130 (445)
T KOG0172|consen   69 LDLVISLLPYTFHPLVAKGCIITKEDSV--TSSYVDPELEELEKAAVPAGSTIMNEIGLDPGID  130 (445)
T ss_pred             cceeeeeccchhhHHHHHHHHHhhcccc--cccccCHHHHhhhhhccCCCceEecccccCcchh
Confidence            7999966666777777899999999999  6678777889999999998888775445666663

>PRK05693 short chain dehydrogenase; Provisional

Probab=94.60  E-value=0.34  Score=41.62  Aligned_cols=32  Identities=34%  Similarity=0.357  Sum_probs=26.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |.++.|.|++|.+|+.+++.+.+ .+.+|+...
T Consensus         1 mk~vlItGasggiG~~la~~l~~-~G~~V~~~~   32 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKA-AGYEVWATA   32 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            45799999999999999999876 488887653

>cd00704 MDH Malate dehydrogenase

Probab=94.57  E-value=0.16  Score=46.13  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=20.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKAR   59 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~   59 (220)
                      +||+|+||+|++|+.++..+...+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~   24 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGE   24 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCC
Confidence            589999999999999998887643

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.51  E-value=0.37  Score=44.38  Aligned_cols=96  Identities=19%  Similarity=0.285  Sum_probs=56.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCcccc--
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM--   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----l~g~~~~~gv~v~--   91 (220)
                      ..||+|+|+ |..|..+++.+.. .++.=+-++|.+.                .|+.-.+     +..+.....+..+  
T Consensus       135 ~~~VlvvG~-GG~Gs~ia~~La~-~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        135 EARVLLIGA-GGLGSPAALYLAA-AGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            358999998 9999999998876 4765566777531                1111111     1101000111111  


Q ss_pred             ----CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                          .++++++.      ++|+|||++..... ...-..|.++++|+|.+..
T Consensus       213 ~~~~~~~~~~~~------~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~  258 (376)
T PRK08762        213 RVTSDNVEALLQ------DVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAV  258 (376)
T ss_pred             cCChHHHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence                12334453      68999988754333 4455778889999887654

>PRK06182 short chain dehydrogenase; Validated

Probab=94.50  E-value=0.66  Score=39.81  Aligned_cols=31  Identities=29%  Similarity=0.459  Sum_probs=26.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|++|+.+++.+.+ .+.+++++.
T Consensus         4 k~vlItGasggiG~~la~~l~~-~G~~V~~~~   34 (273)
T PRK06182          4 KVALVTGASSGIGKATARRLAA-QGYTVYGAA   34 (273)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            5799999999999999999876 588887654

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.49  E-value=0.38  Score=43.09  Aligned_cols=31  Identities=26%  Similarity=0.251  Sum_probs=26.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      +||.|.|++|.+|+.+++.+.+. +.++++..
T Consensus         5 k~ilItGatG~IG~~l~~~L~~~-G~~V~~~~   35 (349)
T TIGR02622         5 KKVLVTGHTGFKGSWLSLWLLEL-GAEVYGYS   35 (349)
T ss_pred             CEEEEECCCChhHHHHHHHHHHC-CCEEEEEe
Confidence            68999999999999999999864 78887653

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.49  E-value=0.26  Score=47.17  Aligned_cols=87  Identities=10%  Similarity=0.066  Sum_probs=50.8

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      .-.-.+|+|+|+ |++|+.+++.+.. -+++++ +++++.. + ..+..    ..|+. +.++++++.      .+|+||
T Consensus       251 ~LaGKtVgVIG~-G~IGr~vA~rL~a-~Ga~Vi-V~e~dp~-~-a~~A~----~~G~~-~~~leell~------~ADIVI  314 (476)
T PTZ00075        251 MIAGKTVVVCGY-GDVGKGCAQALRG-FGARVV-VTEIDPI-C-ALQAA----MEGYQ-VVTLEDVVE------TADIFV  314 (476)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeCCch-h-HHHHH----hcCce-eccHHHHHh------cCCEEE
Confidence            334468999997 9999999998876 478754 4554311 1 10101    12333 346888875      799999


Q ss_pred             EccCchhHH-HHHHHHHHCCCcEE
Q 027650          112 DFTDASTVY-DNVKQATAFGMRSV  134 (220)
Q Consensus       112 DfT~p~~~~-~~~~~al~~G~~vV  134 (220)
                      ..+...... ......++.|.-++
T Consensus       315 ~atGt~~iI~~e~~~~MKpGAiLI  338 (476)
T PTZ00075        315 TATGNKDIITLEHMRRMKNNAIVG  338 (476)
T ss_pred             ECCCcccccCHHHHhccCCCcEEE
Confidence            776433332 23333344444333

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.48  E-value=0.22  Score=48.12  Aligned_cols=65  Identities=18%  Similarity=0.192  Sum_probs=43.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|. |+||+.+++.+... ++++.+ +|+... .+..  .    ..++... ++++++.      .+|+|+..
T Consensus       139 ~gktvgIiG~-G~IG~~vA~~l~~f-G~~V~~-~d~~~~-~~~~--~----~~g~~~~-~l~ell~------~aDiV~l~  201 (526)
T PRK13581        139 YGKTLGIIGL-GRIGSEVAKRAKAF-GMKVIA-YDPYIS-PERA--A----QLGVELV-SLDELLA------RADFITLH  201 (526)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCEEEE-ECCCCC-hhHH--H----hcCCEEE-cHHHHHh------hCCEEEEc
Confidence            3468999996 99999999998764 888875 565311 1111  1    2344444 8999986      78988854


Q ss_pred             cC
Q 027650          114 TD  115 (220)
Q Consensus       114 T~  115 (220)
                      .+
T Consensus       202 lP  203 (526)
T PRK13581        202 TP  203 (526)
T ss_pred             cC
Confidence            43

>PLN02240 UDP-glucose 4-epimerase

Probab=94.45  E-value=0.37  Score=42.78  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=27.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .||.|.|++|.+|+.+++.+.+. +.+|+++.
T Consensus         6 ~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~   36 (352)
T PLN02240          6 RTILVTGGAGYIGSHTVLQLLLA-GYKVVVID   36 (352)
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-CCEEEEEe
Confidence            68999999999999999998875 78888764

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=94.45  E-value=0.086  Score=49.37  Aligned_cols=80  Identities=19%  Similarity=0.257  Sum_probs=47.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ..+|+|+|+ |.||+.+++.+... +.+-+-+++++.  ..+..+..   .+|  +..+.++.+.+.      ++|+||.
T Consensus       182 ~~~vlViGa-G~iG~~~a~~L~~~-G~~~V~v~~r~~--~ra~~la~---~~g~~~~~~~~~~~~l~------~aDvVI~  248 (423)
T PRK00045        182 GKKVLVIGA-GEMGELVAKHLAEK-GVRKITVANRTL--ERAEELAE---EFGGEAIPLDELPEALA------EADIVIS  248 (423)
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHC-CCCeEEEEeCCH--HHHHHHHH---HcCCcEeeHHHHHHHhc------cCCEEEE
Confidence            368999997 99999999988754 664445566532  12222221   122  222345556654      7999998


Q ss_pred             ccC-chhH--HHHHHHHH
Q 027650          113 FTD-ASTV--YDNVKQAT  127 (220)
Q Consensus       113 fT~-p~~~--~~~~~~al  127 (220)
                      +|. |...  .+.+..++
T Consensus       249 aT~s~~~~i~~~~l~~~~  266 (423)
T PRK00045        249 STGAPHPIIGKGMVERAL  266 (423)
T ss_pred             CCCCCCcEEcHHHHHHHH
Confidence            874 3333  34555544

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=94.44  E-value=0.19  Score=44.40  Aligned_cols=33  Identities=21%  Similarity=0.178  Sum_probs=28.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.++++.+++
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~   38 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLLR-GYTVKATVRD   38 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECC
Confidence            58999999999999999998874 7888887764

>PLN00198 anthocyanidin reductase; Provisional

Probab=94.44  E-value=0.17  Score=45.02  Aligned_cols=35  Identities=9%  Similarity=0.140  Sum_probs=29.0

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      ..+.+|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         7 ~~~~~vlItG~~GfIG~~l~~~L~~~-g~~V~~~~r   41 (338)
T PLN00198          7 TGKKTACVIGGTGFLASLLIKLLLQK-GYAVNTTVR   41 (338)
T ss_pred             CCCCeEEEECCchHHHHHHHHHHHHC-CCEEEEEEC
Confidence            34678999999999999999999875 778876653

>PRK06823 ornithine cyclodeaminase; Validated

Probab=94.42  E-value=0.083  Score=47.81  Aligned_cols=91  Identities=11%  Similarity=0.031  Sum_probs=60.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-C-CCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-E-QPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      -+++|+|+ |..++.+++++.....++=+-++++..  ..+..+... . ....+.+.++.++++.      ++|+|+=+
T Consensus       129 ~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~--~~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIV~ta  199 (315)
T PRK06823        129 SAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSE--TALEEYRQYAQALGFAVNTTLDAAEVAH------AANLIVTT  199 (315)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCH--HHHHHHHHHHHhcCCcEEEECCHHHHhc------CCCEEEEe
Confidence            48999996 999999999998888888888888742  112111110 0 0123444789999885      89999854


Q ss_pred             cCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650          114 TDASTVYDNV-KQATAFGMRSV-VYV  137 (220)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vV-igT  137 (220)
                      |+ ... +.+ ...++.|.++. ||+
T Consensus       200 T~-s~~-P~~~~~~l~~G~hi~~iGs  223 (315)
T PRK06823        200 TP-SRE-PLLQAEDIQPGTHITAVGA  223 (315)
T ss_pred             cC-CCC-ceeCHHHcCCCcEEEecCC
Confidence            43 221 222 23567899987 553

>PRK14982 acyl-ACP reductase; Provisional

Probab=94.39  E-value=0.098  Score=48.00  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=25.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      ..+|+|+||+|.||+.+++.+.+..+. +|+ ++++
T Consensus       155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R  189 (340)
T PRK14982        155 KATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR  189 (340)
T ss_pred             CCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence            358999999999999999999754333 444 3444

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=94.36  E-value=0.31  Score=41.71  Aligned_cols=31  Identities=39%  Similarity=0.455  Sum_probs=26.3

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |.|.|++|.+|+.+++.+.+ .+.++.++..+
T Consensus         1 vlVtGatG~iG~~l~~~L~~-~g~~V~~~~r~   31 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTK-DGHEVTILTRS   31 (292)
T ss_pred             CEEEcccchhhHHHHHHHHH-cCCEEEEEeCC
Confidence            57999999999999999887 47899887653

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=94.36  E-value=0.27  Score=46.56  Aligned_cols=31  Identities=26%  Similarity=0.281  Sum_probs=25.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCc-----EEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGM-----EVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~-----eLvg~vd~   69 (220)
                      ||.|+|| |.+|.++++.+.. .|+     .-+.++|.
T Consensus         1 kVlvVGa-GGlGcE~lKnLal-~Gv~~g~~G~I~IvD~   36 (435)
T cd01490           1 KVFLVGA-GAIGCELLKNFAL-MGVGTGESGEITVTDM   36 (435)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCcCCCCeEEEECC
Confidence            6999998 9999999999875 477     56667884

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=94.34  E-value=0.74  Score=34.11  Aligned_cols=83  Identities=20%  Similarity=0.250  Sum_probs=47.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (220)
                      +|+|+|+.-++-..+-+.+.+ -+.++... .++. |..-             -...++..+.      ++|+||-+|..
T Consensus         1 ~vliVGG~~~~~~~~~~~~~~-~G~~~~~h-g~~~-~~~~-------------~~~~l~~~i~------~aD~VIv~t~~   58 (97)
T PF10087_consen    1 SVLIVGGREDRERRYKRILEK-YGGKLIHH-GRDG-GDEK-------------KASRLPSKIK------KADLVIVFTDY   58 (97)
T ss_pred             CEEEEcCCcccHHHHHHHHHH-cCCEEEEE-ecCC-CCcc-------------chhHHHHhcC------CCCEEEEEeCC
Confidence            589999434788877777666 57777765 3221 1100             0112444453      78998877753


Q ss_pred             hhH---HHHHHHHHHCCCcEEEeC-CCCC
Q 027650          117 STV---YDNVKQATAFGMRSVVYV-PHIQ  141 (220)
Q Consensus       117 ~~~---~~~~~~al~~G~~vVigT-tG~~  141 (220)
                      -.+   ...-..|.+.|+|++.-. +|++
T Consensus        59 vsH~~~~~vk~~akk~~ip~~~~~~~~~~   87 (97)
T PF10087_consen   59 VSHNAMWKVKKAAKKYGIPIIYSRSRGVS   87 (97)
T ss_pred             cChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence            332   334456666677777654 3544

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=94.31  E-value=0.47  Score=46.63  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=28.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~v   67 (220)
                      .++||.|.|++|.+|+.+++.+.+. ++.+++++.
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d   39 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLD   39 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEe
Confidence            3479999999999999999999875 578887653

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=94.30  E-value=0.12  Score=46.19  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=24.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      |||.|.|++|.+|+.+++.+.+. +.+.+..++
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~-g~~~v~~~~   32 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINN-TQDSVVNVD   32 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHh-CCCeEEEec
Confidence            58999999999999999999875 333333344

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=94.29  E-value=0.1  Score=46.88  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=29.4

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      ++.+||.|.|++|.+|+.+++.+.+. +.++++..+
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~-G~~V~~~~r   42 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQR-GYTVHATLR   42 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeC
Confidence            34569999999999999999999875 788887654

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=94.19  E-value=0.21  Score=45.24  Aligned_cols=34  Identities=21%  Similarity=0.221  Sum_probs=25.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |||+|+|++|++|..++-.+...+-..=+..+|.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi   34 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI   34 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEec
Confidence            6999999889999999988776544333346664

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=94.17  E-value=0.46  Score=43.13  Aligned_cols=66  Identities=15%  Similarity=0.061  Sum_probs=43.4

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -...+|||+|. |++|+.+++.+...=++++++ +|+... .+...      ..++. +.++++++.      .+|+|+-
T Consensus       143 L~gktvGIiG~-G~IG~~va~~l~~~fgm~V~~-~~~~~~-~~~~~------~~~~~-~~~l~ell~------~sDvv~l  206 (323)
T PRK15409        143 VHHKTLGIVGM-GRIGMALAQRAHFGFNMPILY-NARRHH-KEAEE------RFNAR-YCDLDTLLQ------ESDFVCI  206 (323)
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhHH------hcCcE-ecCHHHHHH------hCCEEEE
Confidence            34469999996 999999999886223888874 554311 11111      22333 469999997      7998885


Q ss_pred             cc
Q 027650          113 FT  114 (220)
Q Consensus       113 fT  114 (220)
                      ..
T Consensus       207 h~  208 (323)
T PRK15409        207 IL  208 (323)
T ss_pred             eC
Confidence            43

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.15  E-value=0.33  Score=42.48  Aligned_cols=127  Identities=19%  Similarity=0.109  Sum_probs=66.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|+ |.||+.++..+... +.++. +++++.  ..+.++...-...+.....++++...     .++|+||.+|
T Consensus       117 ~k~vliiGa-Gg~g~aia~~L~~~-g~~v~-v~~R~~--~~~~~la~~~~~~~~~~~~~~~~~~~-----~~~DivInat  186 (270)
T TIGR00507       117 NQRVLIIGA-GGAARAVALPLLKA-DCNVI-IANRTV--SKAEELAERFQRYGEIQAFSMDELPL-----HRVDLIINAT  186 (270)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHHHHHhhcCceEEechhhhcc-----cCccEEEECC
Confidence            358999997 99999999998865 56655 556532  12222221000112111223333322     3789999776


Q ss_pred             CchhH--H---HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          115 DASTV--Y---DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       115 ~p~~~--~---~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      +....  .   ......++.+.-++ -..-...+.  .|.+.|++.|.+++-    .+++ |+.|.+.+.
T Consensus       187 p~gm~~~~~~~~~~~~~l~~~~~v~-D~~y~p~~T--~ll~~A~~~G~~~vd----G~~M-l~~Qa~~~f  248 (270)
T TIGR00507       187 SAGMSGNIDEPPVPAEKLKEGMVVY-DMVYNPGET--PFLAEAKSLGTKTID----GLGM-LVAQAALAF  248 (270)
T ss_pred             CCCCCCCCCCCCCCHHHcCCCCEEE-EeccCCCCC--HHHHHHHHCCCeeeC----CHHH-HHHHHHHHH
Confidence            53211  0   11123345554333 222111121  478888888887664    5555 556666444

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06932 glycerate dehydrogenase; Provisional

Probab=94.15  E-value=0.4  Score=43.27  Aligned_cols=60  Identities=13%  Similarity=0.055  Sum_probs=42.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .-.+|+|+|. |++|+.+++.+... ++++.+ +++.. ..+          ... -+.++++++.      .+|+|+..
T Consensus       146 ~gktvgIiG~-G~IG~~va~~l~~f-g~~V~~-~~~~~-~~~----------~~~-~~~~l~ell~------~sDiv~l~  204 (314)
T PRK06932        146 RGSTLGVFGK-GCLGTEVGRLAQAL-GMKVLY-AEHKG-ASV----------CRE-GYTPFEEVLK------QADIVTLH  204 (314)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhcC-CCEEEE-ECCCc-ccc----------ccc-ccCCHHHHHH------hCCEEEEc
Confidence            3469999996 99999999988764 889876 45421 000          011 1568999997      79998855


Q ss_pred             c
Q 027650          114 T  114 (220)
Q Consensus       114 T  114 (220)
                      .
T Consensus       205 ~  205 (314)
T PRK06932        205 C  205 (314)
T ss_pred             C
Confidence            4

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=94.15  E-value=0.27  Score=44.16  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=25.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      |||+|+|++|.+|..++..+...+-. +|+.+ |+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lv-d~   34 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLI-SR   34 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEE-EC
Confidence            69999999999999999988876433 46554 54

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=94.15  E-value=0.3  Score=45.83  Aligned_cols=115  Identities=19%  Similarity=0.245  Sum_probs=69.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCC-------CCCccccCCHHHHHhcc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQ-------PLEIPVMSDLTMVLGSI  101 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~-------~~gv~v~~dl~~~l~~~  101 (220)
                      .-.||+|-|. |+.|+..++.+.+. +.+||++.|+     +..|-|...+....+       -.+....+ -++++.  
T Consensus       206 ~G~rVaVQG~-GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~-~~e~~~--  280 (411)
T COG0334         206 EGARVAVQGF-GNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYIT-NEELLE--  280 (411)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEcc-cccccc--
Confidence            4579999996 99999999999876 9999999985     334666544432210       11222222 266665  


Q ss_pred             ccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                         .++|+++=+...+.. .+++.....+   +|.|-. + ++++ ..++..   +  ..+++.|.+
T Consensus       281 ---~~cDIl~PcA~~n~I~~~na~~l~ak---~V~EgAN~P~t~e-A~~i~~---e--rGIl~~PD~  335 (411)
T COG0334         281 ---VDCDILIPCALENVITEDNADQLKAK---IVVEGANGPTTPE-ADEILL---E--RGILVVPDI  335 (411)
T ss_pred             ---ccCcEEcccccccccchhhHHHhhhc---EEEeccCCCCCHH-HHHHHH---H--CCCEEcChh
Confidence               389998866665544 4555543333   777654 4 3443 333332   4  356666654

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=94.13  E-value=0.29  Score=48.88  Aligned_cols=35  Identities=23%  Similarity=0.179  Sum_probs=27.0

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ....||+|+|+ |.||+.++..+....+++++ ++|.
T Consensus       302 ~~i~~v~ViGa-G~mG~~iA~~~a~~~G~~V~-l~d~  336 (699)
T TIGR02440       302 AKIKKVGILGG-GLMGGGIASVTATKAGIPVR-IKDI  336 (699)
T ss_pred             ccccEEEEECC-cHHHHHHHHHHHHHcCCeEE-EEeC
Confidence            34568999997 99999999877645688776 4664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK07411 hypothetical protein; Validated

Probab=94.12  E-value=0.49  Score=44.01  Aligned_cols=98  Identities=15%  Similarity=0.204  Sum_probs=60.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-----CC-------cchh---------hhhcCCCCCCccccC-
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-----VG-------EDIG---------MVCDMEQPLEIPVMS-   92 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-----~g-------~d~g---------~l~g~~~~~gv~v~~-   92 (220)
                      ..||+|+|+ |.+|..+++.+.. .|+.=..++|.+.     .+       .|+|         .+..+.....+..+. 
T Consensus        38 ~~~VlivG~-GGlG~~va~~La~-~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~  115 (390)
T PRK07411         38 AASVLCIGT-GGLGSPLLLYLAA-AGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET  115 (390)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHH-cCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence            458999998 9999999998876 4777777888421     11       1111         011111011111111 


Q ss_pred             -----CHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-CC
Q 027650           93 -----DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI  140 (220)
Q Consensus        93 -----dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G~  140 (220)
                           +..+.+.      ++|+|||++..-.. .-.-..|.+.++|+|.|.. ||
T Consensus       116 ~~~~~~~~~~~~------~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~  164 (390)
T PRK07411        116 RLSSENALDILA------PYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRF  164 (390)
T ss_pred             ccCHHhHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence                 2334454      79999999865544 3444788999999998755 54

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.11  E-value=0.14  Score=46.22  Aligned_cols=71  Identities=21%  Similarity=0.214  Sum_probs=42.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CCc--chhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGE--DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~--d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      ..||+|+|+ |++|..++-.+...+-..=+.++|...   .|.  |+...........+..+.|++++ .      ++|+
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~------~adi   74 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-A------NSKV   74 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-C------CCCE
Confidence            459999997 999999988777654444345778522   121  22222111001134445788864 3      8999


Q ss_pred             EEEc
Q 027650          110 VIDF  113 (220)
Q Consensus       110 VIDf  113 (220)
                      ||.+
T Consensus        75 vvit   78 (312)
T cd05293          75 VIVT   78 (312)
T ss_pred             EEEC
Confidence            8864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05993 short chain dehydrogenase; Provisional

Probab=94.06  E-value=0.52  Score=40.73  Aligned_cols=32  Identities=22%  Similarity=0.329  Sum_probs=26.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      +.+|.|+|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         4 ~k~vlItGasggiG~~la~~l~~-~G~~Vi~~~   35 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQS-DGWRVFATC   35 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEE
Confidence            34799999999999999999876 588887654

>PRK14852 hypothetical protein; Provisional

Probab=94.05  E-value=0.39  Score=49.69  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=26.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..||+|+|+ |++|..++..+... |+.=.-++|.
T Consensus       332 ~srVlVvGl-GGlGs~ia~~LAra-GVG~I~L~D~  364 (989)
T PRK14852        332 RSRVAIAGL-GGVGGIHLMTLART-GIGNFNLADF  364 (989)
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHc-CCCeEEEEcC
Confidence            458999998 99999999988764 6655556673

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=94.05  E-value=0.2  Score=46.93  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=48.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ..+|+|+|+ |.||+.+++.+... ++.-+-+++++.  ..+.+++.   ..+  ...++++.+++.      ++|+||.
T Consensus       180 ~~~VlViGa-G~iG~~~a~~L~~~-G~~~V~v~~rs~--~ra~~la~---~~g~~~i~~~~l~~~l~------~aDvVi~  246 (417)
T TIGR01035       180 GKKALLIGA-GEMGELVAKHLLRK-GVGKILIANRTY--ERAEDLAK---ELGGEAVKFEDLEEYLA------EADIVIS  246 (417)
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHC-CCCEEEEEeCCH--HHHHHHHH---HcCCeEeeHHHHHHHHh------hCCEEEE
Confidence            358999997 99999999998774 643344566532  22222221   111  112346666665      7999998


Q ss_pred             ccC-chhH--HHHHHHHHH
Q 027650          113 FTD-ASTV--YDNVKQATA  128 (220)
Q Consensus       113 fT~-p~~~--~~~~~~al~  128 (220)
                      +|. |...  .+.+..+..
T Consensus       247 aT~s~~~ii~~e~l~~~~~  265 (417)
T TIGR01035       247 STGAPHPIVSKEDVERALR  265 (417)
T ss_pred             CCCCCCceEcHHHHHHHHh
Confidence            874 3333  355555544

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN02494 adenosylhomocysteinase

Probab=94.02  E-value=0.41  Score=45.85  Aligned_cols=105  Identities=11%  Similarity=0.068  Sum_probs=59.2

Q ss_pred             CCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      +....-.+|+|+|+ |++|+.+++.+... +++++. ++++.. + ..+..    ..|..+ .++++++.      .+|+
T Consensus       249 ~i~LaGKtVvViGy-G~IGr~vA~~aka~-Ga~VIV-~e~dp~-r-~~eA~----~~G~~v-v~leEal~------~ADV  312 (477)
T PLN02494        249 DVMIAGKVAVICGY-GDVGKGCAAAMKAA-GARVIV-TEIDPI-C-ALQAL----MEGYQV-LTLEDVVS------EADI  312 (477)
T ss_pred             CCccCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EeCCch-h-hHHHH----hcCCee-ccHHHHHh------hCCE
Confidence            33333468999997 99999999998765 888654 554321 1 11111    123332 26788875      7999


Q ss_pred             EEEccCchhH-HHHHHHHHHCCCcEE-EeCCCCCHHHHHHHHHH
Q 027650          110 VIDFTDASTV-YDNVKQATAFGMRSV-VYVPHIQLETVSALSAF  151 (220)
Q Consensus       110 VIDfT~p~~~-~~~~~~al~~G~~vV-igTtG~~~e~~~~L~~a  151 (220)
                      +|..|..... .......++.|.-++ +|-.+ ++-+.+.|.++
T Consensus       313 VI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~-~eID~~aL~~~  355 (477)
T PLN02494        313 FVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD-NEIDMLGLETY  355 (477)
T ss_pred             EEECCCCccchHHHHHhcCCCCCEEEEcCCCC-CccCHHHHhhc
Confidence            9976654433 344444555554444 33222 23334556655

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=94.00  E-value=0.27  Score=43.16  Aligned_cols=128  Identities=17%  Similarity=0.188  Sum_probs=72.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-----ccCCHHHHHhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-----VMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-----v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      |||.|.|+| .=|+.+++.+.+... -++.++- ++.++-......   ...+.     -.+++.+.+.+    .++|+|
T Consensus         1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~t-~~g~~~~~~~~~---~~~v~~G~lg~~~~l~~~l~~----~~i~~v   70 (249)
T PF02571_consen    1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVAT-SYGGELLKPELP---GLEVRVGRLGDEEGLAEFLRE----NGIDAV   70 (249)
T ss_pred             CEEEEEech-HHHHHHHHHHHhcCC-EEEEEEh-hhhHhhhccccC---CceEEECCCCCHHHHHHHHHh----CCCcEE
Confidence            689999986 569999999887655 2333322 221111100000   00111     12355666653    689999


Q ss_pred             EEccCchhH--HHH-HHHHHHCCCcEE-EeCCCCC---------HHHHHHHHHHhhh-cCceEEEcCCCcHHHHHHHHHH
Q 027650          111 IDFTDASTV--YDN-VKQATAFGMRSV-VYVPHIQ---------LETVSALSAFCDK-ASMGCLIAPTLSIGSILLQQAA  176 (220)
Q Consensus       111 IDfT~p~~~--~~~-~~~al~~G~~vV-igTtG~~---------~e~~~~L~~aA~~-~~v~vviapNfS~Gv~ll~~~a  176 (220)
                      ||.|+|-+.  -++ ...|.+.|+|.+ ..=|.+.         -+..++..+++.+ .+-.+++    .+|..-+..+.
T Consensus        71 IDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~~ifl----ttGsk~L~~f~  146 (249)
T PF02571_consen   71 IDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGGRIFL----TTGSKNLPPFV  146 (249)
T ss_pred             EECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCCCEEE----eCchhhHHHHh
Confidence            999999665  244 478888999997 3333221         1223333333333 3367777    77887777675


Q ss_pred             H
Q 027650          177 I  177 (220)
Q Consensus       177 ~  177 (220)
                      .
T Consensus       147 ~  147 (249)
T PF02571_consen  147 P  147 (249)
T ss_pred             h
Confidence            4

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP

Probab=93.99  E-value=0.78  Score=43.06  Aligned_cols=92  Identities=17%  Similarity=0.227  Sum_probs=57.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCC--HHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~d--l~~~l~~~~~~~~~DVV  110 (220)
                      +-|+.|+|+ |..|+.+++.+.+++  +++++|.+|.+..  ..+.     .-.|+|+..+  +.+.+.+    .++|.|
T Consensus       125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~--~~~~-----~i~g~pVlg~~~l~~~i~~----~~id~V  192 (456)
T TIGR03022       125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPA--ASGR-----LLTGLPVVGADDALRLYAR----TRYAYV  192 (456)
T ss_pred             CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCcc--cccc-----ccCCCcccChhHHHHHHHh----CCCCEE
Confidence            457999997 999999999987654  5899999985321  1111     0235566544  4444442    478865


Q ss_pred             EEccCc----hhHHHHHHHHHHCCC-cEEEeCCCC
Q 027650          111 IDFTDA----STVYDNVKQATAFGM-RSVVYVPHI  140 (220)
Q Consensus       111 IDfT~p----~~~~~~~~~al~~G~-~vVigTtG~  140 (220)
                      + .+.|    +...+.+..|.+.|+ .+.+ .|.+
T Consensus       193 i-IAip~~~~~~~~~ll~~l~~~~v~~V~~-vP~~  225 (456)
T TIGR03022       193 I-VAMPGTQAEDMARLVRKLGALHFRNVLI-VPSL  225 (456)
T ss_pred             E-EecCCccHHHHHHHHHHHHhCCCeEEEE-eCcc
Confidence            5 3443    333466677777888 5544 4543

This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=93.98  E-value=0.43  Score=41.33  Aligned_cols=29  Identities=28%  Similarity=0.436  Sum_probs=24.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      ||.|.|++|.+|+.+++.+.+. +.+++++
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~-g~~V~~~   29 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLES-GHEVVVL   29 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhC-CCeEEEE
Confidence            6899999999999999998764 6777654

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.98  E-value=0.14  Score=45.74  Aligned_cols=31  Identities=29%  Similarity=0.382  Sum_probs=24.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      ||+|+|+ |++|+.++..+....-. +|+ ++|+
T Consensus         2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~-l~D~   33 (306)
T cd05291           2 KVVIIGA-GHVGSSFAYSLVNQGIADELV-LIDI   33 (306)
T ss_pred             EEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEeC
Confidence            8999997 99999999988765433 444 5675

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=93.97  E-value=0.34  Score=43.87  Aligned_cols=96  Identities=17%  Similarity=0.208  Sum_probs=60.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc---cccCC--HHHHHhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI---PVMSD--LTMVLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv---~v~~d--l~~~l~~~~~~~~~DVV  110 (220)
                      -+|.|+|++|.+|...+.++... +...++++.+..   ....+.    .+|.   ..|.+  +.+.+.++..+..+|+|
T Consensus       144 ~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~~---k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv  215 (326)
T COG0604         144 ETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSSE---KLELLK----ELGADHVINYREEDFVEQVRELTGGKGVDVV  215 (326)
T ss_pred             CEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCHH---HHHHHH----hcCCCEEEcCCcccHHHHHHHHcCCCCceEE
Confidence            37999999999999999887765 546666655421   111111    2222   11322  44443322112369999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                      +|....+.+.+.+......|.-+.+|.++
T Consensus       216 ~D~vG~~~~~~~l~~l~~~G~lv~ig~~~  244 (326)
T COG0604         216 LDTVGGDTFAASLAALAPGGRLVSIGALS  244 (326)
T ss_pred             EECCCHHHHHHHHHHhccCCEEEEEecCC
Confidence            99888887777777777777777888875

>PRK05442 malate dehydrogenase; Provisional

Probab=93.95  E-value=0.34  Score=44.06  Aligned_cols=24  Identities=21%  Similarity=0.509  Sum_probs=20.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHh
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTK   57 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~   57 (220)
                      .+.||+|+|++|.+|..++-.+..
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~   26 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIAS   26 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHh
Confidence            467999999889999998876654

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=93.94  E-value=1.8  Score=40.20  Aligned_cols=117  Identities=20%  Similarity=0.190  Sum_probs=63.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcCCCCCCccccCC-HHHHHhccccCCCccEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVID  112 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g---~l~g~~~~~gv~v~~d-l~~~l~~~~~~~~~DVVID  112 (220)
                      ||.|+|. |+.|..+++.+.+ .+.++.+ .|.... .+..   .+..  ...|+.++.. -.+.+.      ++|+|| 
T Consensus         1 ~~~~iG~-G~~G~a~a~~l~~-~G~~V~~-sD~~~~-~~~~~~~~~~~--~~~gi~~~~g~~~~~~~------~~d~vv-   67 (433)
T TIGR01087         1 KILILGL-GKTGRAVARFLHK-KGAEVTV-TDLKPN-EELEPSMGQLR--LNEGSVLHTGLHLEDLN------NADLVV-   67 (433)
T ss_pred             CEEEEEe-CHhHHHHHHHHHH-CCCEEEE-EeCCCC-ccchhHHHHHh--hccCcEEEecCchHHhc------cCCEEE-
Confidence            6899997 9999998888765 5888764 674221 1111   1110  0235555421 123333      689877 


Q ss_pred             ccC--chhHHHHHHHHHHCCCcEE--------------EeCCCCC--HHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650          113 FTD--ASTVYDNVKQATAFGMRSV--------------VYVPHIQ--LETVSALSAFCDKASMGCLIAPTLSI  167 (220)
Q Consensus       113 fT~--p~~~~~~~~~al~~G~~vV--------------igTtG~~--~e~~~~L~~aA~~~~v~vviapNfS~  167 (220)
                      .|+  |... +.+..|.+.|++++              ||-||-.  -....-|..+-+..|..+++..|+..
T Consensus        68 ~sp~i~~~~-p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~  139 (433)
T TIGR01087        68 KSPGIPPDH-PLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGT  139 (433)
T ss_pred             ECCCCCCCC-HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCH
Confidence            453  3332 44556666666653              3444431  11223344444555666667677544

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=93.90  E-value=0.31  Score=42.95  Aligned_cols=32  Identities=19%  Similarity=0.175  Sum_probs=26.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      ..+|.|.|++|.+|+.+++.+.+. +.++++..
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~-G~~V~~~~   36 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFR-GYTINATV   36 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHC-CCEEEEEE
Confidence            358999999999999999998864 78887654

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=93.86  E-value=0.22  Score=43.10  Aligned_cols=57  Identities=14%  Similarity=0.135  Sum_probs=37.6

Q ss_pred             EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           39 IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        39 ~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .|.|++|.+|+.+++.+.+. +.+++.+..+..     +         ++.-..++++++..    .++|+||.+.
T Consensus         1 lItGa~GfiG~~l~~~L~~~-g~~v~~~~~~~~-----~---------Dl~~~~~l~~~~~~----~~~d~Vih~A   57 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEAL-GFTNLVLRTHKE-----L---------DLTRQADVEAFFAK----EKPTYVILAA   57 (306)
T ss_pred             CcccCCCcccHHHHHHHHhC-CCcEEEeecccc-----C---------CCCCHHHHHHHHhc----cCCCEEEEee
Confidence            37899999999999999764 566654433210     1         12223456666653    4689999885

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=93.85  E-value=0.58  Score=40.68  Aligned_cols=31  Identities=29%  Similarity=0.361  Sum_probs=25.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ||.|+|+ |.+|.++++.+.. .++.=.-++|.
T Consensus         1 kVlvvG~-GGlG~eilk~La~-~Gvg~i~ivD~   31 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLAL-MGFGQIHVIDM   31 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCeEEEEeC
Confidence            6999997 9999999999876 47766777884

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=93.79  E-value=0.4  Score=42.78  Aligned_cols=31  Identities=13%  Similarity=0.207  Sum_probs=25.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~   66 (220)
                      .+|.|.|++|.+|+.+++.+.+.. ..+++..
T Consensus         5 k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~   36 (324)
T TIGR03589         5 KSILITGGTGSFGKAFISRLLENYNPKKIIIY   36 (324)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEE
Confidence            589999999999999999998763 3676654

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=93.78  E-value=0.14  Score=46.00  Aligned_cols=37  Identities=22%  Similarity=0.227  Sum_probs=32.9

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +.+.||+|.||.|++||-+.-++...|.+.-.+.+|-
T Consensus        26 ~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi   62 (345)
T KOG1494|consen   26 QRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDI   62 (345)
T ss_pred             cCcceEEEEecCCccCccHHHHHhcCcccceeeeeec
Confidence            4568999999999999999988888999888888884

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=93.74  E-value=0.23  Score=45.02  Aligned_cols=34  Identities=15%  Similarity=0.350  Sum_probs=25.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~------eLvg~vd~   69 (220)
                      .+||+|+|++|++|..++-.+....-+      ||+ .+|.
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~-L~Di   41 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQ-LLEL   41 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEE-EEec
Confidence            469999998899999988877653222      454 6675

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=93.73  E-value=0.19  Score=44.68  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=28.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .+.+|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~-G~~V~~~~r   38 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSK-GYEVHGIIR   38 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHC-CCEEEEEec
Confidence            3468999999999999999999874 889887654

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=93.70  E-value=0.52  Score=42.71  Aligned_cols=31  Identities=23%  Similarity=0.305  Sum_probs=25.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ||+|+|+ |..|..+++.+.. .|+.=.-++|.
T Consensus         1 kVLIvGa-GGLGs~vA~~La~-aGVg~ItlvD~   31 (307)
T cd01486           1 KCLLLGA-GTLGCNVARNLLG-WGVRHITFVDS   31 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-cCCCeEEEECC
Confidence            7999998 9999999999876 47766667773

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK08267 short chain dehydrogenase; Provisional

Probab=93.67  E-value=0.37  Score=40.92  Aligned_cols=31  Identities=29%  Similarity=0.445  Sum_probs=26.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      |.++.|+|++|.+|+.+++.+.+. +.+++..
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~-G~~V~~~   31 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAE-GWRVGAY   31 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHC-CCeEEEE
Confidence            457999999999999999998764 7777754

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.67  E-value=0.47  Score=38.53  Aligned_cols=81  Identities=17%  Similarity=0.068  Sum_probs=47.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .||.|+|+ |++|...++.+.+ .+.+++ +++++. .+++.++.      .+.. ...+++..-     .++|+||-.|
T Consensus        14 ~~vlVvGG-G~va~rka~~Ll~-~ga~V~-VIsp~~-~~~l~~l~------~i~~~~~~~~~~dl-----~~a~lViaaT   78 (157)
T PRK06719         14 KVVVIIGG-GKIAYRKASGLKD-TGAFVT-VVSPEI-CKEMKELP------YITWKQKTFSNDDI-----KDAHLIYAAT   78 (157)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CCCEEE-EEcCcc-CHHHHhcc------CcEEEecccChhcC-----CCceEEEECC
Confidence            58999997 9999999998876 466776 445532 22332221      1111 223333221     3789888777


Q ss_pred             CchhHHHHHHHHHHCCC
Q 027650          115 DASTVYDNVKQATAFGM  131 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~  131 (220)
                      .-+.....+..+.+.+.
T Consensus        79 ~d~e~N~~i~~~a~~~~   95 (157)
T PRK06719         79 NQHAVNMMVKQAAHDFQ   95 (157)
T ss_pred             CCHHHHHHHHHHHHHCC
Confidence            66666555554445454

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.67  E-value=0.6  Score=43.75  Aligned_cols=62  Identities=19%  Similarity=0.093  Sum_probs=42.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .-.+|||+|. |++|+.+++.+... |+++.+ +|+..  ..  .      ..++....++++++.      .+|+|+..
T Consensus       150 ~gktvGIiG~-G~IG~~vA~~~~~f-Gm~V~~-~d~~~--~~--~------~~~~~~~~~l~ell~------~sDiVslh  210 (409)
T PRK11790        150 RGKTLGIVGY-GHIGTQLSVLAESL-GMRVYF-YDIED--KL--P------LGNARQVGSLEELLA------QSDVVSLH  210 (409)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-ECCCc--cc--c------cCCceecCCHHHHHh------hCCEEEEc
Confidence            3468999996 99999999988765 899876 45421  00  0      112333458999996      78988854


Q ss_pred             c
Q 027650          114 T  114 (220)
Q Consensus       114 T  114 (220)
                      .
T Consensus       211 ~  211 (409)
T PRK11790        211 V  211 (409)
T ss_pred             C
Confidence            3

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.66  E-value=0.57  Score=39.61  Aligned_cols=86  Identities=17%  Similarity=0.164  Sum_probs=49.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .||.|+|+ |.||...++.+.+. +.+++ +++++. .+.+.++..   ...+.. ...+++..-     .++|+||-+|
T Consensus        11 k~vLVIGg-G~va~~ka~~Ll~~-ga~V~-VIs~~~-~~~l~~l~~---~~~i~~~~~~~~~~~l-----~~adlViaaT   78 (202)
T PRK06718         11 KRVVIVGG-GKVAGRRAITLLKY-GAHIV-VISPEL-TENLVKLVE---EGKIRWKQKEFEPSDI-----VDAFLVIAAT   78 (202)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCeEE-EEcCCC-CHHHHHHHh---CCCEEEEecCCChhhc-----CCceEEEEcC
Confidence            58999997 99999999988774 56665 445532 233333332   111222 112222211     3789988777


Q ss_pred             CchhHHHHHHHHHHCCCcE
Q 027650          115 DASTVYDNVKQATAFGMRS  133 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~v  133 (220)
                      ..+.....+...++.++.+
T Consensus        79 ~d~elN~~i~~~a~~~~lv   97 (202)
T PRK06718         79 NDPRVNEQVKEDLPENALF   97 (202)
T ss_pred             CCHHHHHHHHHHHHhCCcE
Confidence            6666655554444667655

>PRK06180 short chain dehydrogenase; Provisional

Probab=93.61  E-value=0.36  Score=41.69  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=26.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      +.+|.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~-~G~~V~~~~   35 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALA-AGHRVVGTV   35 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHh-CcCEEEEEe
Confidence            45799999999999999999876 488877654

>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=93.60  E-value=0.56  Score=43.74  Aligned_cols=89  Identities=15%  Similarity=0.104  Sum_probs=52.9

Q ss_pred             EEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcC----C-------------------CCCCccccC---
Q 027650           40 INGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDM----E-------------------QPLEIPVMS---   92 (220)
Q Consensus        40 V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g~----~-------------------~~~gv~v~~---   92 (220)
                      |.|+||-+|+...+.+.++|+ ++++|+.....    ...+...    .                   ...++.++.   
T Consensus         1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n----~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~   76 (383)
T PRK12464          1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYN----IELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTD   76 (383)
T ss_pred             CCccccHHHHHHHHHHHhCccccEEEEEECCCC----HHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHH
Confidence            579999999999999988765 99999987321    1111100    0                   000122222   


Q ss_pred             CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEe
Q 027650           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (220)
                      .+.++...    .++|+|+-...--+-..-...++++|+.+-..
T Consensus        77 ~l~~l~~~----~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLA  116 (383)
T PRK12464         77 GLIAVATH----PGSDLVLSSVVGAAGLLPTIEALKAKKDIALA  116 (383)
T ss_pred             HHHHHHcC----CCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEe
Confidence            23333332    45788885444444466677788888887654

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=93.59  E-value=0.19  Score=44.95  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=27.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      +|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         2 ~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r   32 (343)
T TIGR01472         2 IALITGITGQDGSYLAEFLLEK-GYEVHGLIR   32 (343)
T ss_pred             eEEEEcCCCcHHHHHHHHHHHC-CCEEEEEec
Confidence            7999999999999999999874 889887653

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN00203 glutamyl-tRNA reductase

Probab=93.54  E-value=0.22  Score=48.17  Aligned_cols=83  Identities=16%  Similarity=0.241  Sum_probs=49.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc--cccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ..||+|+|+ |.||+.+++.+... +++=+-+++++.  ..+..+...-....+  ..++++.+++.      ++|+||-
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~~-G~~~V~V~nRs~--era~~La~~~~g~~i~~~~~~dl~~al~------~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVSK-GCTKMVVVNRSE--ERVAALREEFPDVEIIYKPLDEMLACAA------EADVVFT  335 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHhC-CCCeEEEEeCCH--HHHHHHHHHhCCCceEeecHhhHHHHHh------cCCEEEE
Confidence            468999997 99999999998864 654445566542  223333210000111  22456666664      7999997


Q ss_pred             ccC---chhHHHHHHHHH
Q 027650          113 FTD---ASTVYDNVKQAT  127 (220)
Q Consensus       113 fT~---p~~~~~~~~~al  127 (220)
                      .|.   |-...+.++.+.
T Consensus       336 AT~s~~pvI~~e~l~~~~  353 (519)
T PLN00203        336 STSSETPLFLKEHVEALP  353 (519)
T ss_pred             ccCCCCCeeCHHHHHHhh
Confidence            652   333356666554

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=93.53  E-value=0.81  Score=40.55  Aligned_cols=127  Identities=17%  Similarity=0.135  Sum_probs=64.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCccccC---CHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMS---DLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~~gv~v~~---dl~~~l~~~~~~~~~DVVI  111 (220)
                      .+|.|+|+ |.+|+.++..+.+. +++=+-+++++.  ..+.+++.. +....+....   ++.+.+      .++|+||
T Consensus       126 k~vlvlGa-GGaarai~~aL~~~-G~~~i~I~nRt~--~ka~~La~~~~~~~~~~~~~~~~~~~~~~------~~~DiVI  195 (282)
T TIGR01809       126 FRGLVIGA-GGTSRAAVYALASL-GVTDITVINRNP--DKLSRLVDLGVQVGVITRLEGDSGGLAIE------KAAEVLV  195 (282)
T ss_pred             ceEEEEcC-cHHHHHHHHHHHHc-CCCeEEEEeCCH--HHHHHHHHHhhhcCcceeccchhhhhhcc------cCCCEEE
Confidence            48999997 99999999988764 665556677642  223333211 0011122222   222333      2789999


Q ss_pred             EccCchhHH--HHHHH----HH---HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          112 DFTDASTVY--DNVKQ----AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       112 DfT~p~~~~--~~~~~----al---~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      ..|+.....  +.+..    ..   ..+..+|.-- -+.+.+ ..|.+.|++.|.+++-    .+++ |+.+.+.+.
T Consensus       196 naTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~-vY~P~~-T~ll~~A~~~G~~~~~----Gl~M-Lv~Qa~~~f  265 (282)
T TIGR01809       196 STVPADVPADYVDLFATVPFLLLKRKSSEGIFLDA-AYDPWP-TPLVAIVSAAGWRVIS----GLQM-LLHQGFAQF  265 (282)
T ss_pred             ECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEE-eeCCCC-CHHHHHHHHCCCEEEC----cHHH-HHHHHHHHH
Confidence            776532211  11111    01   0122232111 122222 3477888888877664    5666 555555443

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PLN02572 UDP-sulfoquinovose synthase

Probab=93.50  E-value=0.14  Score=48.17  Aligned_cols=32  Identities=31%  Similarity=0.365  Sum_probs=27.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      +++||.|.|++|.+|+.+++.+.+. +.+++++
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~   77 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKR-GYEVAIV   77 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEE
Confidence            3579999999999999999999874 7887764

>PRK14851 hypothetical protein; Provisional

Probab=93.48  E-value=0.66  Score=46.36  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=25.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..||+|+|+ |++|..++..+... |+.=.-++|.
T Consensus        43 ~~~VlIvG~-GGlGs~va~~Lar~-GVG~l~LvD~   75 (679)
T PRK14851         43 EAKVAIPGM-GGVGGVHLITMVRT-GIGRFHIADF   75 (679)
T ss_pred             cCeEEEECc-CHHHHHHHHHHHHh-CCCeEEEEcC
Confidence            458999997 99999999988764 6544456663

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.48  E-value=3.3  Score=38.69  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=64.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCC-CCccccC--CHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQP-LEIPVMS--DLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~-~gv~v~~--dl~~~l~~~~~~~~~DVVID  112 (220)
                      --|+|+|. |+.|..+++.+.+ .+.++.+ .|.........++.   .. .|++++.  .-.+.+.      ++|+|| 
T Consensus         7 ~~~~v~G~-G~sG~s~a~~L~~-~G~~v~~-~D~~~~~~~~~~l~---~~~~g~~~~~~~~~~~~~~------~~d~vV-   73 (448)
T PRK03803          7 GLHIVVGL-GKTGLSVVRFLAR-QGIPFAV-MDSREQPPGLDTLA---REFPDVELRCGGFDCELLV------QASEII-   73 (448)
T ss_pred             CeEEEEee-cHhHHHHHHHHHh-CCCeEEE-EeCCCCchhHHHHH---hhcCCcEEEeCCCChHHhc------CCCEEE-
Confidence            35999997 9999998887765 5887664 77432111112221   11 2566532  1223343      689877 


Q ss_pred             ccC--chhHHHHHHHHHHCCCcEE--------------EeCCCCC-H-HHHHHHHHHhhhcCceEEEcCCCcHH
Q 027650          113 FTD--ASTVYDNVKQATAFGMRSV--------------VYVPHIQ-L-ETVSALSAFCDKASMGCLIAPTLSIG  168 (220)
Q Consensus       113 fT~--p~~~~~~~~~al~~G~~vV--------------igTtG~~-~-e~~~~L~~aA~~~~v~vviapNfS~G  168 (220)
                      .|+  |.. .+.+..|.+.|++++              |+-||-+ + -...-|..+-++.|..+++..|+...
T Consensus        74 ~sp~i~~~-~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p  146 (448)
T PRK03803         74 ISPGLALD-TPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP  146 (448)
T ss_pred             ECCCCCCC-CHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence            453  332 234555556666553              3444431 1 12233444455566677787885444

>PRK06487 glycerate dehydrogenase; Provisional

Probab=93.45  E-value=0.6  Score=42.13  Aligned_cols=59  Identities=17%  Similarity=0.043  Sum_probs=41.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .-.+|+|+|. |++|+.+++.+... ++++.+ +++.  +...          .+ -+.++++++.      .+|+|+..
T Consensus       147 ~gktvgIiG~-G~IG~~vA~~l~~f-gm~V~~-~~~~--~~~~----------~~-~~~~l~ell~------~sDiv~l~  204 (317)
T PRK06487        147 EGKTLGLLGH-GELGGAVARLAEAF-GMRVLI-GQLP--GRPA----------RP-DRLPLDELLP------QVDALTLH  204 (317)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhC-CCEEEE-ECCC--CCcc----------cc-cccCHHHHHH------hCCEEEEC
Confidence            3358999996 99999999998765 889876 4542  1110          01 1358999996      79998854


Q ss_pred             c
Q 027650          114 T  114 (220)
Q Consensus       114 T  114 (220)
                      .
T Consensus       205 l  205 (317)
T PRK06487        205 C  205 (317)
T ss_pred             C
Confidence            4

>PRK06153 hypothetical protein; Provisional

Probab=93.43  E-value=0.54  Score=43.98  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=25.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||+|+|| |+.|..++..+....--+|+ ++|.
T Consensus       177 ~~VaIVG~-GG~GS~Va~~LAR~GVgeI~-LVD~  208 (393)
T PRK06153        177 QRIAIIGL-GGTGSYILDLVAKTPVREIH-LFDG  208 (393)
T ss_pred             CcEEEEcC-CccHHHHHHHHHHcCCCEEE-EECC
Confidence            59999998 99999999999887444554 6674

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.36  E-value=0.42  Score=43.23  Aligned_cols=33  Identities=21%  Similarity=0.201  Sum_probs=25.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ||+|+|++|++|..++-.+....-..=...+|.
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di   33 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDI   33 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecC
Confidence            799999989999999988876543333346775

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=93.33  E-value=0.61  Score=42.40  Aligned_cols=26  Identities=19%  Similarity=0.469  Sum_probs=21.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKAR   59 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~   59 (220)
                      ..+||+|+|++|.+|..++-.+...+
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~   27 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGE   27 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCC
Confidence            35899999988999999988776553

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.29  E-value=0.76  Score=42.12  Aligned_cols=97  Identities=20%  Similarity=0.189  Sum_probs=60.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .+|+|.|+ |++|..-++...+. +++++++-.+..                     .-++++..    -.+|..||++-
T Consensus       183 ~~vgI~Gl-GGLGh~aVq~AKAM-G~rV~vis~~~~---------------------kkeea~~~----LGAd~fv~~~~  235 (360)
T KOG0023|consen  183 KWVGIVGL-GGLGHMAVQYAKAM-GMRVTVISTSSK---------------------KKEEAIKS----LGADVFVDSTE  235 (360)
T ss_pred             cEEEEecC-cccchHHHHHHHHh-CcEEEEEeCCch---------------------hHHHHHHh----cCcceeEEecC
Confidence            58999998 55999988877665 899987543321                     12344443    25777777774


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia  162 (220)
                      .....+.+..+++-+++-|+-   +++.-++.+-++.|.+|.-+++.
T Consensus       236 d~d~~~~~~~~~dg~~~~v~~---~a~~~~~~~~~~lk~~Gt~V~vg  279 (360)
T KOG0023|consen  236 DPDIMKAIMKTTDGGIDTVSN---LAEHALEPLLGLLKVNGTLVLVG  279 (360)
T ss_pred             CHHHHHHHHHhhcCcceeeee---ccccchHHHHHHhhcCCEEEEEe
Confidence            444556666666777666652   23333445666666666666643

>TIGR01746 Thioester-redct thioester reductase domain

Probab=93.20  E-value=0.64  Score=40.84  Aligned_cols=33  Identities=15%  Similarity=0.237  Sum_probs=26.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~   69 (220)
                      +|.|.|++|.+|+.+++.+.+. ...++++.+.+
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~   34 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRA   34 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEcc
Confidence            5899999999999999999876 33678777643

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional

Probab=93.19  E-value=0.99  Score=43.08  Aligned_cols=87  Identities=21%  Similarity=0.248  Sum_probs=55.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHH---HhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMV---LGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~---l~~~~~~~~~DVV  110 (220)
                      .++.|+|+ |.-|+.+++.+..++  +++++|.+|.+..+.   .      ..|+|+..+.+++   ...    ...|++
T Consensus       147 rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~---~------i~gvPVlg~~d~l~~~~~~----~~v~vI  212 (476)
T PRK15204        147 KKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASDA---E------INMLPVIKDTEIIWDLNRT----GDVHYI  212 (476)
T ss_pred             CeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCcccc---c------cCCCcccCCHHHHHHHHHh----CCCcEE
Confidence            57999997 999999999998765  789999998542221   1      2367777665533   221    356765


Q ss_pred             EEccCch----hHHHHHHHHHHCCCcEEEeCC
Q 027650          111 IDFTDAS----TVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       111 IDfT~p~----~~~~~~~~al~~G~~vVigTt  138 (220)
                      |  +.|.    ...+.+..+.+.|+.-|.=.|
T Consensus       213 I--Aip~~~~~~r~~il~~l~~~gv~~V~vIP  242 (476)
T PRK15204        213 L--AYEYTELEKTHFWLRELSKHHCRSVTVVP  242 (476)
T ss_pred             E--EeCcCcHHHHHHHHHHHhhcCCeEEEEeC
Confidence            4  3332    233667788888885332234

>PRK07454 short chain dehydrogenase; Provisional

Probab=93.18  E-value=0.79  Score=38.32  Aligned_cols=32  Identities=34%  Similarity=0.500  Sum_probs=26.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      +|.++.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~-~G~~V~~~   36 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAK-AGWDLALV   36 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHH-CCCEEEEE
Confidence            456899999999999999999976 47776654

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.18  E-value=0.3  Score=43.81  Aligned_cols=34  Identities=24%  Similarity=0.183  Sum_probs=26.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      |||+|+|+ |.+|..++..+....-..-+.++|+.
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~   34 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDIN   34 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            58999997 99999999988765434555577863

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=93.13  E-value=0.44  Score=40.27  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=26.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |+|.|.|++|++|+.+++.+.+. +.+++.+.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~-G~~V~~~~   31 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQ-GHKVIATG   31 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHC-CCEEEEEE
Confidence            57999999999999999998864 78877543

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=93.12  E-value=0.74  Score=39.75  Aligned_cols=31  Identities=26%  Similarity=0.404  Sum_probs=27.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      +|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r   32 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDR   32 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhC-CCeEEEEeC
Confidence            4999999999999999999876 889988764

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.11  E-value=0.64  Score=46.60  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=26.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..-||+|+|+ |.||+.|+..+... +++++ ++|.
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~-G~~V~-l~d~  344 (715)
T PRK11730        312 PVKQAAVLGA-GIMGGGIAYQSASK-GVPVI-MKDI  344 (715)
T ss_pred             ccceEEEECC-chhHHHHHHHHHhC-CCeEE-EEeC
Confidence            3458999997 99999999877654 88776 4564

>PRK06179 short chain dehydrogenase; Provisional

Probab=93.08  E-value=1.8  Score=36.80  Aligned_cols=31  Identities=32%  Similarity=0.497  Sum_probs=26.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++...
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~~-g~~V~~~~   35 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLARA-GYRVFGTS   35 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHC-CCEEEEEe
Confidence            47999999999999999998864 88877654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.03  E-value=0.55  Score=47.00  Aligned_cols=34  Identities=21%  Similarity=0.157  Sum_probs=27.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ...||+|+|+ |.||+.++..+....+++++- +|.
T Consensus       308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~~V~l-~d~  341 (708)
T PRK11154        308 PVNKVGVLGG-GLMGGGIAYVTATKAGLPVRI-KDI  341 (708)
T ss_pred             cccEEEEECC-chhhHHHHHHHHHHcCCeEEE-EeC
Confidence            3458999998 999999998877566888774 664

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=93.02  E-value=0.68  Score=41.99  Aligned_cols=31  Identities=29%  Similarity=0.352  Sum_probs=26.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ||.|+|+ |.+|.++++.+.. .|+.=+.++|.
T Consensus         1 kVlIVGa-GGlG~EiaKnLal-~Gvg~ItIvD~   31 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVL-TGFGEIHIIDL   31 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHH-hcCCeEEEEcC
Confidence            6999998 9999999999875 48888888885

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.01  E-value=0.38  Score=43.34  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=24.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ||+|+|+ |++|..++-.+...+-+.=+.++|.
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di   32 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDV   32 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            7999998 9999999988876554444447785

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.00  E-value=1.1  Score=43.43  Aligned_cols=124  Identities=8%  Similarity=0.084  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV  110 (220)
                      +=+|.|+|+ |++|+.+++.+.+. +.+++ ++|++.  +...++.    ..|.++ +   +|.+ ++++.+ -.++|++
T Consensus       417 ~~hiiI~G~-G~~G~~la~~L~~~-g~~vv-vId~d~--~~~~~~~----~~g~~~i~GD~~~~~-~L~~a~-i~~a~~v  485 (558)
T PRK10669        417 CNHALLVGY-GRVGSLLGEKLLAA-GIPLV-VIETSR--TRVDELR----ERGIRAVLGNAANEE-IMQLAH-LDCARWL  485 (558)
T ss_pred             CCCEEEECC-ChHHHHHHHHHHHC-CCCEE-EEECCH--HHHHHHH----HCCCeEEEcCCCCHH-HHHhcC-ccccCEE
Confidence            458999997 99999999998764 66665 566532  1222222    123332 2   2322 222110 1378877


Q ss_pred             EEccCchhHHHHH-HHHHH-C-CCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650          111 IDFTDASTVYDNV-KQATA-F-GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (220)
Q Consensus       111 IDfT~p~~~~~~~-~~al~-~-G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~  175 (220)
                      +-.++-+....++ ..+.+ + .+++|.=  .-++++.+.++    +.|+-.++.|..-++-.+.+.+
T Consensus       486 iv~~~~~~~~~~iv~~~~~~~~~~~iiar--~~~~~~~~~l~----~~Gad~vv~p~~~~a~~i~~~l  547 (558)
T PRK10669        486 LLTIPNGYEAGEIVASAREKRPDIEIIAR--AHYDDEVAYIT----ERGANQVVMGEREIARTMLELL  547 (558)
T ss_pred             EEEcCChHHHHHHHHHHHHHCCCCeEEEE--ECCHHHHHHHH----HcCCCEEEChHHHHHHHHHHHh
Confidence            6343332222222 22222 2 3445532  23455555554    4778889988876666544433

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=92.97  E-value=0.21  Score=43.52  Aligned_cols=69  Identities=16%  Similarity=0.143  Sum_probs=41.3

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCC---CC--cchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650           38 VIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~---~g--~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      |+|+|+.|.||..++..+...+  ...=+.++|.+.   .+  .|+...........+..++|+.+.+.      ++|+|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~------~aDiV   74 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFK------DADVV   74 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhC------CCCEE
Confidence            6899988999999999887655  222334667522   11  12222221100234555678777775      89998


Q ss_pred             EE
Q 027650          111 ID  112 (220)
Q Consensus       111 ID  112 (220)
                      |.
T Consensus        75 v~   76 (263)
T cd00650          75 II   76 (263)
T ss_pred             EE
Confidence            85

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK07904 short chain dehydrogenase; Provisional

Probab=92.93  E-value=1.1  Score=38.28  Aligned_cols=34  Identities=24%  Similarity=0.199  Sum_probs=28.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      ...+|.|.|++|++|+.+++.+.+..+..++...
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~   40 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAA   40 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEe
Confidence            4457999999999999999998887668877653

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=92.92  E-value=0.76  Score=39.50  Aligned_cols=80  Identities=23%  Similarity=0.286  Sum_probs=47.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcE--EEEEEecCC---CCcc------hhhhhcCCCCCC-ccccCCHHHHHhcccc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGME--VAGAIDSHS---VGED------IGMVCDMEQPLE-IPVMSDLTMVLGSISQ  103 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~e--Lvg~vd~~~---~g~d------~g~l~g~~~~~g-v~v~~dl~~~l~~~~~  103 (220)
                      .||.|+|+ |.+|+.+++.+... ++.  =+.++|++.   ..+.      ..++..   ..+ -....++.+.+.    
T Consensus        26 ~rvlvlGA-GgAg~aiA~~L~~~-G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~---~~~~~~~~~~l~~~l~----   96 (226)
T cd05311          26 VKIVINGA-GAAGIAIARLLLAA-GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAK---ETNPEKTGGTLKEALK----   96 (226)
T ss_pred             CEEEEECc-hHHHHHHHHHHHHc-CcCcceEEEEeCCCccccccchhhhHHHHHHHH---HhccCcccCCHHHHHh----
Confidence            58999998 99999999998764 776  567788751   1110      011221   111 011136766664    


Q ss_pred             CCCccEEEEccCchhH-HHHHHHH
Q 027650          104 SKARAVVIDFTDASTV-YDNVKQA  126 (220)
Q Consensus       104 ~~~~DVVIDfT~p~~~-~~~~~~a  126 (220)
                        ++|++|..|++... .+.++..
T Consensus        97 --~~dvlIgaT~~G~~~~~~l~~m  118 (226)
T cd05311          97 --GADVFIGVSRPGVVKKEMIKKM  118 (226)
T ss_pred             --cCCEEEeCCCCCCCCHHHHHhh
Confidence              69999988764443 2444433

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]

Probab=92.88  E-value=0.76  Score=45.28  Aligned_cols=109  Identities=13%  Similarity=0.125  Sum_probs=75.1

Q ss_pred             eEEEEcCCCH---HHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           37 KVIINGAVKE---IGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      -|+|+|++++   +|..+.+.+.+..+=++..+- +.     ..+      -.|++.|++..++-+      .+|+.|-.
T Consensus        12 svavigas~~~~~vg~~i~~nL~~~g~g~i~PVn-p~-----~~~------v~G~~ay~s~~~lp~------~~dlav~~   73 (598)
T COG1042          12 SIAVIGASERPGKLGYEILRNLLEYGQGKIYPVN-PK-----YDE------VLGVKAYTSVADLPD------APDLAVIV   73 (598)
T ss_pred             eEEEeeccCCcchhHHHHHHHHHhcCCCceEecC-cc-----ccc------cccccccchHhhCCC------CCCeeEEE
Confidence            5999999876   677888887766433444321 11     112      236778888888764      78988878


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEe-CCCCCH------HHHHHHHHHhhhcCceEEEcCC
Q 027650          114 TDASTVYDNVKQATAFGMRSVVY-VPHIQL------ETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVig-TtG~~~------e~~~~L~~aA~~~~v~vviapN  164 (220)
                      +++..+.+.+..|-+.|+...|= +.||.+      +-.+++.++|++.++.++- ||
T Consensus        74 v~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~rlig-Pn  130 (598)
T COG1042          74 VPAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIG-PN  130 (598)
T ss_pred             echhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCceEec-cc
Confidence            99999999999999999776544 446642      2334455588877777665 77

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=92.83  E-value=0.69  Score=39.36  Aligned_cols=30  Identities=20%  Similarity=0.371  Sum_probs=25.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      |+|.|.|++|.+|+.+++.+.+ .+.+++..
T Consensus         1 m~vlItGas~gIG~aia~~l~~-~G~~V~~~   30 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLK-KGARVVIS   30 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHH-cCCEEEEE
Confidence            5899999999999999999876 47886654

>PRK07825 short chain dehydrogenase; Provisional

Probab=92.79  E-value=1  Score=38.55  Aligned_cols=79  Identities=23%  Similarity=0.170  Sum_probs=47.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .+|.|.|++|.+|+.+++.+.+ .+..++.. +++.  ....++.               +.+.      .+. +..|++
T Consensus         6 ~~ilVtGasggiG~~la~~l~~-~G~~v~~~-~r~~--~~~~~~~---------------~~~~------~~~~~~~D~~   60 (273)
T PRK07825          6 KVVAITGGARGIGLATARALAA-LGARVAIG-DLDE--ALAKETA---------------AELG------LVVGGPLDVT   60 (273)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEE-ECCH--HHHHHHH---------------HHhc------cceEEEccCC
Confidence            5799999999999999999876 47776543 3321  1111110               0010      122 345778


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++...+.+..+.+.  ++.++|-..|
T Consensus        61 ~~~~~~~~~~~~~~~~~~id~li~~ag   87 (273)
T PRK07825         61 DPASFAAFLDAVEADLGPIDVLVNNAG   87 (273)
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777776666555443  5667775554

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=92.76  E-value=1.9  Score=42.38  Aligned_cols=120  Identities=13%  Similarity=0.124  Sum_probs=67.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV  110 (220)
                      ..+|.|+|+ |++|+.+++.+.+ .+.+++ ++|++.  +.+..+.    ..|.++ +   ++.+ ++.+.+ -.++|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~-~g~~vv-vID~d~--~~v~~~~----~~g~~v~~GDat~~~-~L~~ag-i~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMA-NKMRIT-VLERDI--SAVNLMR----KYGYKVYYGDATQLE-LLRAAG-AEKAEAI  468 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHh-CCCCEE-EEECCH--HHHHHHH----hCCCeEEEeeCCCHH-HHHhcC-CccCCEE
Confidence            468999997 9999999998875 467766 466542  1222221    234333 2   2332 222111 1368887


Q ss_pred             EEccCch-hHHHHHHHHHHCC--CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH
Q 027650          111 IDFTDAS-TVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (220)
Q Consensus       111 IDfT~p~-~~~~~~~~al~~G--~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l  171 (220)
                      |-.+.-+ .....+..+.+..  .++++  ...++++.++|++    .|+-.++..+|--+..+
T Consensus       469 v~~~~d~~~n~~i~~~~r~~~p~~~Iia--Ra~~~~~~~~L~~----~Ga~~vv~e~~es~l~l  526 (601)
T PRK03659        469 VITCNEPEDTMKIVELCQQHFPHLHILA--RARGRVEAHELLQ----AGVTQFSRETFSSALEL  526 (601)
T ss_pred             EEEeCCHHHHHHHHHHHHHHCCCCeEEE--EeCCHHHHHHHHh----CCCCEEEccHHHHHHHH
Confidence            7444332 2234445555543  34443  3456677677765    56677776766655544

>COG2403 Predicted GTPase [General function prediction only]

Probab=92.74  E-value=0.55  Score=43.87  Aligned_cols=99  Identities=20%  Similarity=0.257  Sum_probs=66.3

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--chh--hhhcCCCCCCccccC-----CHHHHHhccc
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DIG--MVCDMEQPLEIPVMS-----DLTMVLGSIS  102 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~g--~l~g~~~~~gv~v~~-----dl~~~l~~~~  102 (220)
                      +..+.||.+.|+.|+==..--..+...|.++++++..-...|-  ...  .+.|.-.+.|+|++.     +++.++.+  
T Consensus         3 m~a~kRviiLgaggrdfhv~n~a~r~~~~yevvaf~aaqiiG~~er~yppsleg~~~p~Gvpi~~~k~~~~lek~ire--   80 (449)
T COG2403           3 MKARKRVIILGAGGRDFHVFNVALRDNPEYEVVAFTAAQIIGGTERIYPPSLEGVLYPLGVPILPEKDYDDLEKIIRE--   80 (449)
T ss_pred             CCCceeEEEEeccCcccchhhHHhccCCcceEEEEEEEEecCCccccCCCCcccccccCCccccccccHHHHHHHHHH--
Confidence            4567899999996654333334456778899888776322211  111  133322367888853     47777765  


Q ss_pred             cCCCcc-EEEEcc--CchhHHHHHHHHHHCCCcEE
Q 027650          103 QSKARA-VVIDFT--DASTVYDNVKQATAFGMRSV  134 (220)
Q Consensus       103 ~~~~~D-VVIDfT--~p~~~~~~~~~al~~G~~vV  134 (220)
                        .+.| +|+|+|  .++.....+...+..|....
T Consensus        81 --~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~  113 (449)
T COG2403          81 --KDVDIVVLAYSDVSYEHVFRIASRVLSAGADFK  113 (449)
T ss_pred             --cCCCeEEEEcccCCHHHHHHHHHHHHhCCceeE
Confidence              6899 899998  57777889999999997765

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=92.71  E-value=0.2  Score=47.00  Aligned_cols=71  Identities=15%  Similarity=0.152  Sum_probs=44.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..||.|+|+ |.||+.+++.+... +..-+-++.++.  ..+..+...-....+..++++.+.+.      ++|+||.+|
T Consensus       181 ~kkvlviGa-G~~a~~va~~L~~~-g~~~I~V~nRt~--~ra~~La~~~~~~~~~~~~~l~~~l~------~aDiVI~aT  250 (414)
T PRK13940        181 SKNVLIIGA-GQTGELLFRHVTAL-APKQIMLANRTI--EKAQKITSAFRNASAHYLSELPQLIK------KADIIIAAV  250 (414)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEECCCH--HHHHHHHHHhcCCeEecHHHHHHHhc------cCCEEEECc
Confidence            458999997 99999999999764 554455666542  22333332100011222566667775      799999776


Q ss_pred             C
Q 027650          115 D  115 (220)
Q Consensus       115 ~  115 (220)
                      .
T Consensus       251 ~  251 (414)
T PRK13940        251 N  251 (414)
T ss_pred             C
Confidence            4

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=92.66  E-value=0.43  Score=42.34  Aligned_cols=95  Identities=13%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh---hcCCCCCCccccC---CHHHHHhccccCCCccE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV---CDMEQPLEIPVMS---DLTMVLGSISQSKARAV  109 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l---~g~~~~~gv~v~~---dl~~~l~~~~~~~~~DV  109 (220)
                      -+|.|+|++|.+|..++..+.. .+.++++...+..   ....+   .|.   ..+..+.   ++.+.+.... ...+|+
T Consensus       153 ~~VlI~Ga~G~vG~~aiqlAk~-~G~~Vi~~~~~~~---~~~~~~~~lGa---~~vi~~~~~~~~~~~i~~~~-~~gvd~  224 (338)
T cd08295         153 ETVFVSAASGAVGQLVGQLAKL-KGCYVVGSAGSDE---KVDLLKNKLGF---DDAFNYKEEPDLDAALKRYF-PNGIDI  224 (338)
T ss_pred             CEEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHH---HHHHHHHhcCC---ceeEEcCCcccHHHHHHHhC-CCCcEE
Confidence            3799999999999999886665 5888777654321   11111   121   1111121   3333332111 136899


Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      ++|+.......+.+......|.-+.+|..
T Consensus       225 v~d~~g~~~~~~~~~~l~~~G~iv~~G~~  253 (338)
T cd08295         225 YFDNVGGKMLDAVLLNMNLHGRIAACGMI  253 (338)
T ss_pred             EEECCCHHHHHHHHHHhccCcEEEEeccc
Confidence            99987654444444444455665556654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=92.64  E-value=0.42  Score=44.64  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA   58 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~   58 (220)
                      .+||+|+|++|++|..++-.+...
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~   67 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASG   67 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhc
Confidence            589999999899999998877654

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=92.62  E-value=0.18  Score=41.76  Aligned_cols=72  Identities=25%  Similarity=0.236  Sum_probs=41.3

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh-hcCC-CCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV-CDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l-~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |.|.|++|.+|+.+++.+.+. +.+++.+..+.... ..... .... ...++.-.+++++++..    ..+|+||.+..
T Consensus         1 IlI~GatG~iG~~l~~~l~~~-g~~v~~~~~~~~~~-~~~~~~~~~~~~~~dl~~~~~~~~~~~~----~~~d~vi~~a~   74 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKK-GHEVIVLSRSSNSE-SFEEKKLNVEFVIGDLTDKEQLEKLLEK----ANIDVVIHLAA   74 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TTEEEEEESCSTGG-HHHHHHTTEEEEESETTSHHHHHHHHHH----HTESEEEEEBS
T ss_pred             EEEEccCCHHHHHHHHHHHHc-CCcccccccccccc-ccccccceEEEEEeeccccccccccccc----cCceEEEEeec
Confidence            789999999999999999864 67777555443211 11110 0000 00111112345566653    36799998864

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=92.57  E-value=0.52  Score=44.81  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=21.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA   58 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~   58 (220)
                      .+||+|+|++|++|..++-.+...
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~  123 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASG  123 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhc
Confidence            689999998899999999877654

>PLN02686 cinnamoyl-CoA reductase

Probab=92.50  E-value=0.22  Score=45.47  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=30.3

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..+.+|.|.|++|.+|+.+++.+.+ .+.++++++++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~-~G~~V~~~~r~   86 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLR-HGYSVRIAVDT   86 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHH-CCCEEEEEeCC
Confidence            4567999999999999999999886 48898876653

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.49  E-value=1.1  Score=39.63  Aligned_cols=86  Identities=13%  Similarity=0.064  Sum_probs=52.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (220)
                      +|+|+|+ |.+|...+..+.. -+.+.+.++|...  ... +.++   ...  ++ +.++...     ..+|++||++-.
T Consensus       147 ~vlV~G~-G~vG~~a~q~ak~-~G~~~v~~~~~~~--~rl-~~a~---~~~--~i-~~~~~~~-----~g~Dvvid~~G~  210 (308)
T TIGR01202       147 PDLIVGH-GTLGRLLARLTKA-AGGSPPAVWETNP--RRR-DGAT---GYE--VL-DPEKDPR-----RDYRAIYDASGD  210 (308)
T ss_pred             cEEEECC-CHHHHHHHHHHHH-cCCceEEEeCCCH--HHH-Hhhh---hcc--cc-ChhhccC-----CCCCEEEECCCC
Confidence            6999996 9999999876665 4787776676421  111 1111   111  11 1111111     368999999875


Q ss_pred             hhH-HHHHHHHHHCCCcEEEeCC
Q 027650          117 STV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       117 ~~~-~~~~~~al~~G~~vVigTt  138 (220)
                      ... ...+......|+-+++|.+
T Consensus       211 ~~~~~~~~~~l~~~G~iv~~G~~  233 (308)
T TIGR01202       211 PSLIDTLVRRLAKGGEIVLAGFY  233 (308)
T ss_pred             HHHHHHHHHhhhcCcEEEEEeec
Confidence            444 4555666667777778865

>PLN02928 oxidoreductase family protein

Probab=92.47  E-value=0.77  Score=42.02  Aligned_cols=69  Identities=14%  Similarity=0.070  Sum_probs=43.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh--------hcCCCCCCccccCCHHHHHhccccCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV--------CDMEQPLEIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l--------~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (220)
                      ...+|+|+|. |+||+.+++.+... |+++++ +|+... .+....        ...... .. .+.++++++.      
T Consensus       158 ~gktvGIiG~-G~IG~~vA~~l~af-G~~V~~-~dr~~~-~~~~~~~~~~~~~~~~~~~~-~~-~~~~L~ell~------  225 (347)
T PLN02928        158 FGKTVFILGY-GAIGIELAKRLRPF-GVKLLA-TRRSWT-SEPEDGLLIPNGDVDDLVDE-KG-GHEDIYEFAG------  225 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhC-CCEEEE-ECCCCC-hhhhhhhccccccccccccc-cC-cccCHHHHHh------
Confidence            3469999996 99999999998764 889886 465311 111000        000000 11 3568999996      


Q ss_pred             CccEEEEcc
Q 027650          106 ARAVVIDFT  114 (220)
Q Consensus       106 ~~DVVIDfT  114 (220)
                      .+|+|+-..
T Consensus       226 ~aDiVvl~l  234 (347)
T PLN02928        226 EADIVVLCC  234 (347)
T ss_pred             hCCEEEECC
Confidence            799988544

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.43  E-value=7.2  Score=37.07  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=24.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||.|+|. |+.|..+++.+.. .+.++.+ +|.
T Consensus         8 ~~i~v~G~-G~sG~s~a~~L~~-~G~~v~~-~D~   38 (498)
T PRK02006          8 PMVLVLGL-GESGLAMARWCAR-HGARLRV-ADT   38 (498)
T ss_pred             CEEEEEee-cHhHHHHHHHHHH-CCCEEEE-EcC
Confidence            48999997 9999998887765 5788764 775

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=92.42  E-value=1.3  Score=39.72  Aligned_cols=68  Identities=12%  Similarity=0.096  Sum_probs=40.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-----cCCC--CCCccccCCHHHHHhccccCCCcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-----DMEQ--PLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~-----g~~~--~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      +||+|+|+ |.||..++-.+....-.+ |-++|... ....++..     +...  ...+..+.|+++ +.      ++|
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~-VvlvDi~~-~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~------~aD   71 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELAD-LVLLDVVE-GIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TA------NSD   71 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCe-EEEEeCCC-ChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hC------CCC
Confidence            59999997 999999998877653236 55677521 11111111     0000  112334578877 43      799


Q ss_pred             EEEEc
Q 027650          109 VVIDF  113 (220)
Q Consensus       109 VVIDf  113 (220)
                      +||.+
T Consensus        72 iVIit   76 (305)
T TIGR01763        72 IVVIT   76 (305)
T ss_pred             EEEEc
Confidence            88854

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06953 short chain dehydrogenase; Provisional

Probab=92.40  E-value=0.89  Score=37.73  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=26.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |.++.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~-~G~~v~~~~   32 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRA-DGWRVIATA   32 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHh-CCCEEEEEE
Confidence            45799999999999999999875 588877653

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=92.37  E-value=0.25  Score=45.18  Aligned_cols=90  Identities=12%  Similarity=0.039  Sum_probs=60.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .++|+|+ |.+++.+++++...-+++=+-+++++.. .++....+  .+..+  +...+|.++++.      ++|+|+-+
T Consensus       132 ~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l--~~~~~~~v~a~~s~~~av~------~aDiIvt~  202 (330)
T COG2423         132 TLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARL--RKRGGEAVGAADSAEEAVE------GADIVVTA  202 (330)
T ss_pred             EEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHH--HhhcCccceeccCHHHHhh------cCCEEEEe
Confidence            6999997 9999999999998888888888886421 11111111  11233  455788999986      79999955


Q ss_pred             cCchhHHHHHHHHHHCCCcEE-Ee
Q 027650          114 TDASTVYDNVKQATAFGMRSV-VY  136 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV-ig  136 (220)
                      |+. ...-.....++.|.|+. +|
T Consensus       203 T~s-~~Pil~~~~l~~G~hI~aiG  225 (330)
T COG2423         203 TPS-TEPVLKAEWLKPGTHINAIG  225 (330)
T ss_pred             cCC-CCCeecHhhcCCCcEEEecC
Confidence            543 32223355677898886 45

>PRK06988 putative formyltransferase; Provisional

Probab=92.37  E-value=0.36  Score=43.54  Aligned_cols=72  Identities=17%  Similarity=0.331  Sum_probs=46.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-C-CCc----chhhhhcCCCCCCccccC--CH-----HHHHhc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-S-VGE----DIGMVCDMEQPLEIPVMS--DL-----TMVLGS  100 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-~-~g~----d~g~l~g~~~~~gv~v~~--dl-----~~~l~~  100 (220)
                      +||||++.| ++.+|....+.+.+ .++++++++... . .++    ++.+++   ...|++++.  ++     .+.+..
T Consensus         1 ~~mkIvf~G-s~~~a~~~L~~L~~-~~~~i~~Vvt~~d~~~~~~~~~~v~~~A---~~~gip~~~~~~~~~~~~~~~l~~   75 (312)
T PRK06988          1 MKPRAVVFA-YHNVGVRCLQVLLA-RGVDVALVVTHEDNPTENIWFGSVAAVA---AEHGIPVITPADPNDPELRAAVAA   75 (312)
T ss_pred             CCcEEEEEe-CcHHHHHHHHHHHh-CCCCEEEEEcCCCCCccCcCCCHHHHHH---HHcCCcEEccccCCCHHHHHHHHh
Confidence            368999999 59999999998876 478999988642 1 111    223333   255777753  22     222332


Q ss_pred             cccCCCccEEEEcc
Q 027650          101 ISQSKARAVVIDFT  114 (220)
Q Consensus       101 ~~~~~~~DVVIDfT  114 (220)
                          .++|++|-+.
T Consensus        76 ----~~~Dliv~~~   85 (312)
T PRK06988         76 ----AAPDFIFSFY   85 (312)
T ss_pred             ----cCCCEEEEeh
Confidence                4899887554

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=92.34  E-value=1.1  Score=40.26  Aligned_cols=61  Identities=16%  Similarity=0.117  Sum_probs=43.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .-.+|+|+|. |++|+.+++.+... ++++.+ +|+..  ...        ..++. +.++++++.      .+|+|+..
T Consensus       144 ~gktvGIiG~-G~IG~~vA~~~~~f-gm~V~~-~d~~~--~~~--------~~~~~-~~~l~ell~------~sDvv~lh  203 (311)
T PRK08410        144 KGKKWGIIGL-GTIGKRVAKIAQAF-GAKVVY-YSTSG--KNK--------NEEYE-RVSLEELLK------TSDIISIH  203 (311)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhc-CCEEEE-ECCCc--ccc--------ccCce-eecHHHHhh------cCCEEEEe
Confidence            4468999996 99999999988765 889875 56531  110        11222 568999996      79998854


Q ss_pred             c
Q 027650          114 T  114 (220)
Q Consensus       114 T  114 (220)
                      .
T Consensus       204 ~  204 (311)
T PRK08410        204 A  204 (311)
T ss_pred             C
Confidence            4

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=92.34  E-value=0.29  Score=45.25  Aligned_cols=95  Identities=22%  Similarity=0.265  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcc----hhh-hhcCCCCCCcccc---
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGED----IGM-VCDMEQPLEIPVM---   91 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d----~g~-l~g~~~~~gv~v~---   91 (220)
                      -.|.|+|| |+.|--.+..+.. -++-=.|++|.+.                .|+.    +.. +-.+.....|..|   
T Consensus        67 s~VLVVGa-GGLGcPa~~YLaa-aGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~  144 (427)
T KOG2017|consen   67 SSVLVVGA-GGLGCPAAQYLAA-AGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEF  144 (427)
T ss_pred             ccEEEEcc-CCCCCHHHHHHHH-cCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhh
Confidence            47999998 9999999888776 4777778888421                1111    000 1111111222222   


Q ss_pred             ---CCHHHHHhccccCCCccEEEEccC-chhHHHHHHHHHHCCCcEEEeCC
Q 027650           92 ---SDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigTt  138 (220)
                         ++..+++.      ..|||.|+|. +..-+=....|...|+|+|+|.-
T Consensus       145 L~~sNa~~Ii~------~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa  189 (427)
T KOG2017|consen  145 LSSSNAFDIIK------QYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA  189 (427)
T ss_pred             ccchhHHHHhh------ccceEEEcCCCccchhhhhhHHHHcCCccccccc
Confidence               23444553      7999999995 44445666889999999999875

>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6

Probab=92.33  E-value=1.6  Score=33.13  Aligned_cols=31  Identities=16%  Similarity=0.206  Sum_probs=20.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |||.|+|. |.=-.+++..+.+.+.++=+.+.
T Consensus         1 MkVLviGs-GgREHAia~~l~~s~~v~~v~~a   31 (100)
T PF02844_consen    1 MKVLVIGS-GGREHAIAWKLSQSPSVEEVYVA   31 (100)
T ss_dssp             EEEEEEES-SHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCCCCEEEEe
Confidence            79999995 74444556667777777554443

3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=92.33  E-value=1.3  Score=40.71  Aligned_cols=84  Identities=17%  Similarity=0.076  Sum_probs=47.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .||+|+|. |++|+.+++.+..- +..+..=-......+...+       .+.. +.|+++++.      +.|++|...+
T Consensus       163 K~vgilG~-G~IG~~ia~rL~~F-g~~i~y~~r~~~~~~~~~~-------~~~~-~~d~~~~~~------~sD~ivv~~p  226 (336)
T KOG0069|consen  163 KTVGILGL-GRIGKAIAKRLKPF-GCVILYHSRTQLPPEEAYE-------YYAE-FVDIEELLA------NSDVIVVNCP  226 (336)
T ss_pred             CEEEEecC-cHHHHHHHHhhhhc-cceeeeecccCCchhhHHH-------hccc-ccCHHHHHh------hCCEEEEecC
Confidence            38999997 99999999998874 3444432221211111111       1111 568999986      7998886543


Q ss_pred             c-hhH--HHHHHHHHHCCCcEEE
Q 027650          116 A-STV--YDNVKQATAFGMRSVV  135 (220)
Q Consensus       116 p-~~~--~~~~~~al~~G~~vVi  135 (220)
                      - ..+  .-|-+.+...+..+|+
T Consensus       227 Lt~~T~~liNk~~~~~mk~g~vl  249 (336)
T KOG0069|consen  227 LTKETRHLINKKFIEKMKDGAVL  249 (336)
T ss_pred             CCHHHHHHhhHHHHHhcCCCeEE
Confidence            2 222  2333444444444443

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=92.17  E-value=0.45  Score=42.96  Aligned_cols=33  Identities=21%  Similarity=0.219  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||+|+|+ |++|..++-.+...+-..=+.++|.
T Consensus         7 ~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~   39 (315)
T PRK00066          7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDI   39 (315)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            59999998 9999999988877655433446785

>PLN02602 lactate dehydrogenase

Probab=92.17  E-value=0.45  Score=43.79  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=25.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||+|+|+ |++|..++-.+...+-..=+.++|.
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi   70 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDV   70 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            69999997 9999999988776544444457785

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=92.15  E-value=0.4  Score=39.96  Aligned_cols=30  Identities=23%  Similarity=0.378  Sum_probs=24.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc-CCcEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAG   65 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg   65 (220)
                      |+|.|.|++|++|+.+++.+.+. ++..++.
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~   31 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHA   31 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence            48999999999999999998775 4566554

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=92.15  E-value=0.24  Score=41.99  Aligned_cols=33  Identities=30%  Similarity=0.498  Sum_probs=29.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ++|.|.|+||..|+.+++.+.+. +.+++++..+
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~   33 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRN   33 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeC
Confidence            58999999999999999999887 8899988875

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=92.13  E-value=1.8  Score=38.10  Aligned_cols=96  Identities=16%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC---CHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~---dl~~~l~~~~~~~~~DVVID  112 (220)
                      -+|.|+|++|.+|...+..+.. .+.++++...+..   ....+...+ ...+..+.   ++.+.+... ....+|+++|
T Consensus       140 ~~VLI~ga~g~vG~~aiqlAk~-~G~~Vi~~~~s~~---~~~~~~~lG-a~~vi~~~~~~~~~~~~~~~-~~~gvdvv~d  213 (325)
T TIGR02825       140 ETVMVNAAAGAVGSVVGQIAKL-KGCKVVGAAGSDE---KVAYLKKLG-FDVAFNYKTVKSLEETLKKA-SPDGYDCYFD  213 (325)
T ss_pred             CEEEEeCCccHHHHHHHHHHHH-cCCEEEEEeCCHH---HHHHHHHcC-CCEEEeccccccHHHHHHHh-CCCCeEEEEE
Confidence            3799999889999999887655 5888877654321   111111111 00111122   333333221 0125899999


Q ss_pred             ccCchhHHHHHHHHHH-CCCcEEEeCC
Q 027650          113 FTDASTVYDNVKQATA-FGMRSVVYVP  138 (220)
Q Consensus       113 fT~p~~~~~~~~~al~-~G~~vVigTt  138 (220)
                      ++..... +....+++ .|.-+.+|..
T Consensus       214 ~~G~~~~-~~~~~~l~~~G~iv~~G~~  239 (325)
T TIGR02825       214 NVGGEFS-NTVIGQMKKFGRIAICGAI  239 (325)
T ss_pred             CCCHHHH-HHHHHHhCcCcEEEEecch
Confidence            8765544 44444554 5555556653

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK07023 short chain dehydrogenase; Provisional

Probab=92.13  E-value=0.26  Score=41.47  Aligned_cols=32  Identities=22%  Similarity=0.474  Sum_probs=27.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |++|.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~-~G~~v~~~~   32 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQ-PGIAVLGVA   32 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHh-CCCEEEEEe
Confidence            57999999999999999999876 488887654

>PRK08017 oxidoreductase; Provisional

Probab=92.05  E-value=3.4  Score=34.65  Aligned_cols=30  Identities=30%  Similarity=0.498  Sum_probs=25.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      +|.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~-g~~v~~~~   33 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRR-GYRVLAAC   33 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHC-CCEEEEEe
Confidence            6999999999999999999764 77876653

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.93  E-value=0.83  Score=37.96  Aligned_cols=34  Identities=35%  Similarity=0.391  Sum_probs=28.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +.+|.|.|++|.+|+.+++.+.+. +.+++.++++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~~~r   38 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKE-GAKVVIAYDI   38 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            458999999999999999988764 8888776454

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=91.92  E-value=0.78  Score=45.57  Aligned_cols=98  Identities=13%  Similarity=0.183  Sum_probs=59.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC------------C-------Ccchhh-----hhcCCCCCC---
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------------V-------GEDIGM-----VCDMEQPLE---   87 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------------~-------g~d~g~-----l~g~~~~~g---   87 (220)
                      ..||+|+|| |..|..+++.+... |+.=..++|.+.            .       |+.-.+     +..+.....   
T Consensus       338 ~~kVLIvGa-GGLGs~VA~~La~~-GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~  415 (664)
T TIGR01381       338 QLKVLLLGA-GTLGCNVARCLIGW-GVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATG  415 (664)
T ss_pred             cCeEEEECC-cHHHHHHHHHHHHc-CCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEE
Confidence            469999998 99999999988764 776666777310            0       221100     000100000   


Q ss_pred             ----cc-----ccC-----------CHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCCCC
Q 027650           88 ----IP-----VMS-----------DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHI  140 (220)
Q Consensus        88 ----v~-----v~~-----------dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTtG~  140 (220)
                          +|     +..           ++++++.      +.|||+|++..-.. .-.-..|.++|+++|.+.-||
T Consensus       416 ~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~------~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aAlGf  483 (664)
T TIGR01381       416 HRLTVPMPGHPIDEKDVPELEKDIARLEQLIK------DHDVVFLLLDSREARWLPTVLCSRHKKIAISAALGF  483 (664)
T ss_pred             eeeeeccccccCCchhhhhccccHHHHHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEEecc
Confidence                10     111           2445554      79999999965555 344478899999999775555

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK15076 alpha-galactosidase; Provisional

Probab=91.86  E-value=1.6  Score=41.26  Aligned_cols=149  Identities=14%  Similarity=0.141  Sum_probs=76.4

Q ss_pred             CceEEEEcCCCHHHHHH--HHHHHh---cCCcEEEEEEecCCCCcc-hhh----hhc-CCCCCCccccCCHHHHHhcccc
Q 027650           35 NIKVIINGAVKEIGRAA--VIAVTK---ARGMEVAGAIDSHSVGED-IGM----VCD-MEQPLEIPVMSDLTMVLGSISQ  103 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i--~~~i~~---~~~~eLvg~vd~~~~g~d-~g~----l~g-~~~~~gv~v~~dl~~~l~~~~~  103 (220)
                      |+||+|+|+ |.||...  ++.+..   .++.||+ ++|.+..-.+ ...    ... .+....+..++|+.+++.    
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evv-LvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~----   74 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIA-LMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQ----   74 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhC----
Confidence            579999998 9998443  334432   2334544 6775320011 111    111 011233455789888885    


Q ss_pred             CCCccEEEEccCch--hHH--HHHHHHHHCCCcE-EEeCCC---C-----C----HHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          104 SKARAVVIDFTDAS--TVY--DNVKQATAFGMRS-VVYVPH---I-----Q----LETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       104 ~~~~DVVIDfT~p~--~~~--~~~~~al~~G~~v-VigTtG---~-----~----~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                        ++|+||......  ...  ..-+..+++|+-- +..|+|   +     +    .+-.+.|++.|-+   .+++  |||
T Consensus        75 --dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~---a~ii--n~t  147 (431)
T PRK15076         75 --GADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPD---ALLL--NYV  147 (431)
T ss_pred             --CCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCC---eEEE--EcC
Confidence              899988544332  112  3446778999863 224543   2     2    2333344444433   4444  566


Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEeccCCCCCCCCchhhH
Q 027650          167 IGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTS  205 (220)
Q Consensus       167 ~Gv~ll~~~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~  205 (220)
                      --+-++..++.   ++ +...++=.=     |.|-+|+.
T Consensus       148 NP~divt~~~~---~~-~~~rviG~c-----~~~~~~~~  177 (431)
T PRK15076        148 NPMAMNTWAMN---RY-PGIKTVGLC-----HSVQGTAE  177 (431)
T ss_pred             ChHHHHHHHHh---cC-CCCCEEEEC-----CCHHHHHH
Confidence            66666665553   22 344455442     45666663

>PRK06395 phosphoribosylamine--glycine ligase; Provisional

Probab=91.86  E-value=1.3  Score=41.66  Aligned_cols=92  Identities=13%  Similarity=0.096  Sum_probs=50.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ++|||.|+|. |+=...++..+.+. +.++..+..+...|.  ..+.    ..-+.+ ..|++++++- .+..++|.||-
T Consensus         1 ~~~kVLvlG~-G~re~al~~~l~~~-g~~v~~~~~~~Npg~--~~~a----~~~~~~~~~d~e~l~~~-~~~~~id~Vi~   71 (435)
T PRK06395          1 MTMKVMLVGS-GGREDAIARAIKRS-GAILFSVIGHENPSI--KKLS----KKYLFYDEKDYDLIEDF-ALKNNVDIVFV   71 (435)
T ss_pred             CceEEEEECC-cHHHHHHHHHHHhC-CCeEEEEECCCChhh--hhcc----cceeecCCCCHHHHHHH-HHHhCCCEEEE
Confidence            4689999996 77677777777765 467777754322121  0011    000111 2466665431 12247998883


Q ss_pred             ccCchhHHHHHHHHHHCCCcEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSV  134 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV  134 (220)
                      ...+......+..+.+.|++++
T Consensus        72 ~~d~~l~~~~~~~l~~~Gi~v~   93 (435)
T PRK06395         72 GPDPVLATPLVNNLLKRGIKVA   93 (435)
T ss_pred             CCChHHHHHHHHHHHHCCCcEE
Confidence            3222223344555667888876

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=91.83  E-value=0.3  Score=45.82  Aligned_cols=91  Identities=18%  Similarity=0.236  Sum_probs=50.8

Q ss_pred             ceEEEEcCCCHHHHHHHH--HHH---hcCCcEEEEEEecCC-----CCcchhhhhc-CCCCCCccccCCHHHHHhccccC
Q 027650           36 IKVIINGAVKEIGRAAVI--AVT---KARGMEVAGAIDSHS-----VGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQS  104 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~--~i~---~~~~~eLvg~vd~~~-----~g~d~g~l~g-~~~~~gv~v~~dl~~~l~~~~~~  104 (220)
                      +||+|+|+ |.||....-  .+.   ...+.+|+ ++|.+.     ...++..... .+....+..++|+++++.     
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~-----   73 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALD-----   73 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhc-----
Confidence            58999997 999997443  344   34455654 567532     0111111111 111234556889999886     


Q ss_pred             CCccEEEEccCchhHH---HHHHHHHHCCCcEE
Q 027650          105 KARAVVIDFTDASTVY---DNVKQATAFGMRSV  134 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~~---~~~~~al~~G~~vV  134 (220)
                       ++|+||....+....   ..-+..+++|+---
T Consensus        74 -~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~  105 (423)
T cd05297          74 -GADFVINTIQVGGHEYTETDFEIPEKYGYYQT  105 (423)
T ss_pred             -CCCEEEEeeEecCccchhhhhhhHHHcCeeee
Confidence             899998544432222   22346677776533

linked to 3D####ucture

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=91.80  E-value=2.5  Score=41.66  Aligned_cols=118  Identities=14%  Similarity=0.168  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV  110 (220)
                      .-+|.|+|+ ||+|+.+++.+.+ .+.+++. +|.+.  +.+..+.    ..|.++ +   ++.+-+.+. + -.++|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~-~g~~vvv-ID~d~--~~v~~~~----~~g~~v~~GDat~~~~L~~a-g-i~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLS-SGVKMTV-LDHDP--DHIETLR----KFGMKVFYGDATRMDLLESA-G-AAKAEVL  468 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHh-CCCCEEE-EECCH--HHHHHHH----hcCCeEEEEeCCCHHHHHhc-C-CCcCCEE
Confidence            358999997 9999999998876 4677664 56532  1222221    234444 2   233322211 0 1368877


Q ss_pred             EEccC-chhHHHHHHHHHHCC--CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          111 IDFTD-ASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       111 IDfT~-p~~~~~~~~~al~~G--~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      |-.+. ++.....+..+.+..  .++++  -..++++.++|+++    |+-.++.+.+.-+.
T Consensus       469 vv~~~d~~~n~~i~~~ar~~~p~~~iia--Ra~d~~~~~~L~~~----Gad~v~~e~~e~sl  524 (621)
T PRK03562        469 INAIDDPQTSLQLVELVKEHFPHLQIIA--RARDVDHYIRLRQA----GVEKPERETFEGAL  524 (621)
T ss_pred             EEEeCCHHHHHHHHHHHHHhCCCCeEEE--EECCHHHHHHHHHC----CCCEEehhhHhHHH
Confidence            75553 333344455555543  34443  23556666677654    44555545554444

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.76  E-value=1.2  Score=33.31  Aligned_cols=109  Identities=21%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEEEEc
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      |.|+|+ |++|+.+++.+.+ .+.+++. +|.+.  +...++.    ..++.+ +   .+.+.+.. .. -.++|.+|-.
T Consensus         1 vvI~G~-g~~~~~i~~~L~~-~~~~vvv-id~d~--~~~~~~~----~~~~~~i~gd~~~~~~l~~-a~-i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKE-GGIDVVV-IDRDP--ERVEELR----EEGVEVIYGDATDPEVLER-AG-IEKADAVVIL   69 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHH-TTSEEEE-EESSH--HHHHHHH----HTTSEEEES-TTSHHHHHH-TT-GGCESEEEEE
T ss_pred             eEEEcC-CHHHHHHHHHHHh-CCCEEEE-EECCc--HHHHHHH----hcccccccccchhhhHHhh-cC-ccccCEEEEc
Confidence            689997 9999999999988 5666665 44421  1122222    112222 2   23322221 00 1268877755


Q ss_pred             cCchhH-HHHHHHHHH-CC-CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650          114 TDASTV-YDNVKQATA-FG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus       114 T~p~~~-~~~~~~al~-~G-~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                      +.-+.. ...+..+.+ .+ .+++.  .-.+++..+.|+    +.|+-.++.|
T Consensus        70 ~~~d~~n~~~~~~~r~~~~~~~ii~--~~~~~~~~~~l~----~~g~d~vi~P  116 (116)
T PF02254_consen   70 TDDDEENLLIALLARELNPDIRIIA--RVNDPENAELLR----QAGADHVISP  116 (116)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTSEEEE--EESSHHHHHHHH----HTT-SEEEEH
T ss_pred             cCCHHHHHHHHHHHHHHCCCCeEEE--EECCHHHHHHHH----HCCcCEEECc
Confidence            544433 334444444 33 44543  234555544444    3556666654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.71  E-value=0.45  Score=43.89  Aligned_cols=42  Identities=19%  Similarity=0.157  Sum_probs=30.4

Q ss_pred             cccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           26 SCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        26 ~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ..+..+.-...||+|+|+ |++|+..++.+... +.+ |-++|++
T Consensus       158 ~~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~l-Ga~-V~v~d~~  199 (370)
T TIGR00518       158 LLGGVPGVEPGDVTIIGG-GVVGTNAAKMANGL-GAT-VTILDIN  199 (370)
T ss_pred             eecCCCCCCCceEEEEcC-CHHHHHHHHHHHHC-CCe-EEEEECC
Confidence            344444444568999997 99999999988765 677 4557753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.67  E-value=5.6  Score=37.10  Aligned_cols=30  Identities=27%  Similarity=0.257  Sum_probs=24.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ||.|+|+ |+.|...++.+.. .+.++. ++|.
T Consensus         2 ~v~viG~-G~sG~s~a~~l~~-~G~~V~-~~D~   31 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLKA-QGWEVV-VSDR   31 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHHH-CCCEEE-EECC
Confidence            7999997 9999998887765 578765 4774

>PLN02253 xanthoxin dehydrogenase

Probab=91.66  E-value=1.3  Score=37.95  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .++.|.|++|.+|+.+++.+.+. +.+++.+
T Consensus        19 k~~lItGas~gIG~~la~~l~~~-G~~v~~~   48 (280)
T PLN02253         19 KVALVTGGATGIGESIVRLFHKH-GAKVCIV   48 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHHc-CCEEEEE
Confidence            57999999999999999998864 7887764

>PRK06841 short chain dehydrogenase; Provisional

Probab=91.61  E-value=1.2  Score=37.48  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=26.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      ..+|.|.|++|.+|+.+++.+.+ .+.+++...
T Consensus        15 ~k~vlItGas~~IG~~la~~l~~-~G~~Vi~~~   46 (255)
T PRK06841         15 GKVAVVTGGASGIGHAIAELFAA-KGARVALLD   46 (255)
T ss_pred             CCEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            35899999999999999999876 588877643

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=91.56  E-value=1.5  Score=39.06  Aligned_cols=131  Identities=12%  Similarity=0.050  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcC-CCCCC--ccccCCHHHH--HhccccCCCccE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDM-EQPLE--IPVMSDLTMV--LGSISQSKARAV  109 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l~g~-~~~~g--v~v~~dl~~~--l~~~~~~~~~DV  109 (220)
                      .+|.|+|+ |+.++.++-.+.. .++.=+-+++++.. ...+..++.. ....+  +.+ .++++.  +..  ...++|+
T Consensus       125 k~vlvlGa-GGaarAi~~~l~~-~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~--~~~~aDi  199 (288)
T PRK12749        125 KTMVLLGA-GGASTAIGAQGAI-EGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAE--ALASADI  199 (288)
T ss_pred             CEEEEECC-cHHHHHHHHHHHH-CCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhh--hcccCCE
Confidence            48999997 9999998877765 46655667776521 1123333210 01111  222 222211  110  0026899


Q ss_pred             EEEccCchhHH---H--HH-HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          110 VIDFTDASTVY---D--NV-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       110 VIDfT~p~~~~---~--~~-~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      ||..|+.....   .  .. ...+..+.-+ .-- -+++.+ ..|.+.|++.|.+++-    .+++ |+.|.+.+.
T Consensus       200 vINaTp~Gm~~~~~~~~~~~~~~l~~~~~v-~D~-vY~P~~-T~ll~~A~~~G~~~~~----Gl~M-L~~Qa~~~f  267 (288)
T PRK12749        200 LTNGTKVGMKPLENESLVNDISLLHPGLLV-TEC-VYNPHM-TKLLQQAQQAGCKTID----GYGM-LLWQGAEQF  267 (288)
T ss_pred             EEECCCCCCCCCCCCCCCCcHHHCCCCCEE-EEe-cCCCcc-CHHHHHHHHCCCeEEC----CHHH-HHHHHHHHH
Confidence            99887643211   0  00 1122333222 110 123322 3477778887877653    5666 556666544

>PF13941 MutL: MutL protein

Probab=91.54  E-value=3.4  Score=39.48  Aligned_cols=121  Identities=11%  Similarity=0.151  Sum_probs=80.5

Q ss_pred             ccCCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHH
Q 027650           19 VKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVL   98 (220)
Q Consensus        19 ~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l   98 (220)
                      ........||++.-+  +|+.++|..-.|-...++.+....+..++.++.....                  ..+++++.
T Consensus        62 ~~~~~~la~SSAaGG--Lrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~------------------~~~l~~i~  121 (457)
T PF13941_consen   62 DGYDKVLACSSAAGG--LRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELT------------------EEDLEEIR  121 (457)
T ss_pred             cCceEEEEECCCCCc--ceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCC------------------HHHHHHHh
Confidence            445567888887644  5899999988898888888888889999888764321                  22445554


Q ss_pred             hccccCCCccEEEEcc-----CchhHHHHHHHHHHCC--CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650           99 GSISQSKARAVVIDFT-----DASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (220)
Q Consensus        99 ~~~~~~~~~DVVIDfT-----~p~~~~~~~~~al~~G--~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~  167 (220)
                      .     .+||+|+-.-     ..+....|++...+.+  +|+|..   -+.+-.++++++-++.+.++++.+|-=+
T Consensus       122 ~-----~~PDiILLaGGtDgG~~~~il~nA~~La~~~~~~pVIyA---GN~~a~~~v~~il~~~~~~~~~~~NV~P  189 (457)
T PF13941_consen  122 E-----IRPDIILLAGGTDGGNKEVILHNAEMLAEANLRIPVIYA---GNKAAQDEVEEILEKAGKEVVITENVMP  189 (457)
T ss_pred             c-----cCCCEEEEeCCccCCchHHHHHHHHHHHhCCCCCcEEEE---CCHHHHHHHHHHHHhCCCCEEEeCCCCC
Confidence            4     4788776432     4555667776665554  455542   3444556666666667788888888533

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=91.54  E-value=1.3  Score=40.17  Aligned_cols=32  Identities=25%  Similarity=0.285  Sum_probs=24.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      +||+|+|+ |++|+.++-.+....=. ||+ ++|.
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~-LiDi   33 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELV-LIDI   33 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEE-EEEc
Confidence            58999998 99999998888544333 444 6774

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=91.53  E-value=0.85  Score=40.63  Aligned_cols=126  Identities=15%  Similarity=0.069  Sum_probs=65.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC---cccc--CCHHHHHhccccCCCccE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE---IPVM--SDLTMVLGSISQSKARAV  109 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~~g---v~v~--~dl~~~l~~~~~~~~~DV  109 (220)
                      .+|.|+|+ |+.|+.++-.+.. .++.-+-+++++.  ..+.++... ....+   +...  .++++.+.      .+|+
T Consensus       128 k~vlilGa-GGaarAi~~aL~~-~g~~~i~i~nR~~--~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~------~~di  197 (283)
T PRK14027        128 DSVVQVGA-GGVGNAVAYALVT-HGVQKLQVADLDT--SRAQALADVINNAVGREAVVGVDARGIEDVIA------AADG  197 (283)
T ss_pred             CeEEEECC-cHHHHHHHHHHHH-CCCCEEEEEcCCH--HHHHHHHHHHhhccCcceEEecCHhHHHHHHh------hcCE
Confidence            48999997 9999999988876 4665566777642  222233210 00111   1111  12233333      6899


Q ss_pred             EEEccCchhH----HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          110 VIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       110 VIDfT~p~~~----~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      ||++|+....    ...-...+..+ .+|.-- -+++.+ ..|.+.|++.|.+++-    .+++ |+.|.+.+.
T Consensus       198 vINaTp~Gm~~~~~~~~~~~~l~~~-~~v~D~-vY~P~~-T~ll~~A~~~G~~~~~----Gl~M-Lv~Qa~~~f  263 (283)
T PRK14027        198 VVNATPMGMPAHPGTAFDVSCLTKD-HWVGDV-VYMPIE-TELLKAARALGCETLD----GTRM-AIHQAVDAF  263 (283)
T ss_pred             EEEcCCCCCCCCCCCCCCHHHcCCC-cEEEEc-ccCCCC-CHHHHHHHHCCCEEEc----cHHH-HHHHHHHHH
Confidence            9998853211    00001122222 333211 122221 3477888888877654    5666 556655444

>PRK07578 short chain dehydrogenase; Provisional

Probab=91.53  E-value=1.3  Score=36.08  Aligned_cols=30  Identities=40%  Similarity=0.520  Sum_probs=24.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |++.|.|++|++|+.+++.+.+.  .+++...
T Consensus         1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~   30 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR--HEVITAG   30 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEe
Confidence            47999999999999999998876  6666543

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=91.50  E-value=1.1  Score=38.76  Aligned_cols=93  Identities=16%  Similarity=0.223  Sum_probs=48.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCccc---cCCHHHHHhccccCCCccEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~l~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +|+|+|+ |.+|...+..+.. -+.+ +++ ++...  +.. +++   ..+|+..   +.+..+.+.++.....+|++||
T Consensus       123 ~VlV~G~-G~vG~~~~~~ak~-~G~~~Vi~-~~~~~--~r~-~~a---~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid  193 (280)
T TIGR03366       123 RVLVVGA-GMLGLTAAAAAAA-AGAARVVA-ADPSP--DRR-ELA---LSFGATALAEPEVLAERQGGLQNGRGVDVALE  193 (280)
T ss_pred             EEEEECC-CHHHHHHHHHHHH-cCCCEEEE-ECCCH--HHH-HHH---HHcCCcEecCchhhHHHHHHHhCCCCCCEEEE
Confidence            7999997 9999998887665 4776 544 45321  111 111   0122211   1222222211101135899999


Q ss_pred             ccCchhHHHHHHHHH-HCCCcEEEeCC
Q 027650          113 FTDASTVYDNVKQAT-AFGMRSVVYVP  138 (220)
Q Consensus       113 fT~p~~~~~~~~~al-~~G~~vVigTt  138 (220)
                      ++-.....+.+..++ ..|.-+++|..
T Consensus       194 ~~G~~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       194 FSGATAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             CCCChHHHHHHHHHhcCCCEEEEeccC
Confidence            885444444444444 55666667753

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK05866 short chain dehydrogenase; Provisional

Probab=91.44  E-value=1.2  Score=39.15  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=26.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus        41 k~vlItGasggIG~~la~~La~~-G~~Vi~~~   71 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARR-GATVVAVA   71 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEE
Confidence            57999999999999999998764 78887653

>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]

Probab=91.39  E-value=2.7  Score=40.36  Aligned_cols=122  Identities=21%  Similarity=0.247  Sum_probs=76.4

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCC-CCCCc---cccCCH-H------
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDME-QPLEI---PVMSDL-T------   95 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~-~~~gv---~v~~dl-~------   95 (220)
                      ...-.||.|-|+ |+.|...++.+.+ ++-.++++.|.     +..|-|..++..+. .+..+   +-.... +      
T Consensus       248 ~~kgkr~~i~G~-Gnv~~~aa~~l~~-~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~~  325 (514)
T KOG2250|consen  248 GIKGKRVVIQGF-GNVGGHAAKKLSE-KGAKVVAVSDSKGVLINPDGIDIEELLDLADEKKTIKSFDGAKLSYEGYIAGL  325 (514)
T ss_pred             CcCceEEEEeCC-CchHHHHHHHHHh-cCCEEEEEEcCceeEECCCCCCHHHHHHHHHhhccccccccccccCccccccC
Confidence            344468888886 9999988877764 79999999994     44577776665431 01111   111111 1      


Q ss_pred             --HHHhccccCCCccEEEEccCch-hHHHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650           96 --MVLGSISQSKARAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus        96 --~~l~~~~~~~~~DVVIDfT~p~-~~~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                        ..+.     .++|+.+=+..-. ...+++......|++.|++-. + .++|-.+-|++.      .|++.|..+
T Consensus       326 ~~~~~v-----~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptTpeA~~vlek~------gv~i~Pd~~  390 (514)
T KOG2250|consen  326 PPWTLV-----EKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTTPEADEVLEKA------GVLIIPDIY  390 (514)
T ss_pred             cchhhH-----hhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCChhHHHHHHhC------CeEEechhh
Confidence              2232     3799988776544 447999999999999998765 3 355544444432      555555433

>cd08293 PTGR2 Prostaglandin reductase

Probab=91.38  E-value=0.72  Score=40.74  Aligned_cols=97  Identities=12%  Similarity=0.028  Sum_probs=51.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -+|.|+|++|.+|...+..+.. -+. ++++...++.....+.+-.|.   ..+..+  .++.+.+.++. ...+|+++|
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~-~G~~~Vi~~~~s~~~~~~~~~~lGa---~~vi~~~~~~~~~~i~~~~-~~gvd~vid  230 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRL-LGCSRVVGICGSDEKCQLLKSELGF---DAAINYKTDNVAERLRELC-PEGVDVYFD  230 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHhcCC---cEEEECCCCCHHHHHHHHC-CCCceEEEE
Confidence            4799999999999999887665 477 787765432100011110221   111111  23333332211 136899999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeC
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                      ++......+.+......|.=+.+|.
T Consensus       231 ~~g~~~~~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         231 NVGGEISDTVISQMNENSHIILCGQ  255 (345)
T ss_pred             CCCcHHHHHHHHHhccCCEEEEEee
Confidence            8765544344444444555555664

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK07589 ornithine cyclodeaminase; Validated

Probab=91.37  E-value=0.5  Score=43.43  Aligned_cols=93  Identities=13%  Similarity=0.094  Sum_probs=59.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCC-CCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQ-PLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~-~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      -+++|+|+ |..++.+++++.....++=+-++++...  .+..+.. +.. ...+.+.+++++++.      ++|+|+=.
T Consensus       130 ~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~--~a~~~~~~~~~~~~~v~~~~~~~~av~------~ADIIvta  200 (346)
T PRK07589        130 RTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPA--ATAKLARNLAGPGLRIVACRSVAEAVE------GADIITTV  200 (346)
T ss_pred             cEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHH--HHHHHHHHHHhcCCcEEEeCCHHHHHh------cCCEEEEe
Confidence            47999996 9999999998887777888888886421  1112111 111 133555789999986      79999955


Q ss_pred             cCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650          114 TDASTVYDNV-KQATAFGMRSV-VYV  137 (220)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vV-igT  137 (220)
                      |+.....+.+ ...++.|.|+. ||.
T Consensus       201 T~S~~~~Pvl~~~~lkpG~hV~aIGs  226 (346)
T PRK07589        201 TADKTNATILTDDMVEPGMHINAVGG  226 (346)
T ss_pred             cCCCCCCceecHHHcCCCcEEEecCC
Confidence            5322111222 24568899886 453

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=91.36  E-value=1.4  Score=44.27  Aligned_cols=33  Identities=15%  Similarity=0.178  Sum_probs=26.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..-||+|+|+ |-||..|+..+... +++++ ++|.
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~-G~~V~-l~d~  344 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASK-GTPIV-MKDI  344 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhC-CCeEE-EEeC
Confidence            4458999997 99999999887764 88877 4563

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=91.35  E-value=1.9  Score=40.56  Aligned_cols=103  Identities=17%  Similarity=0.161  Sum_probs=67.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------CCCc------chhh----hhcCCCCCCccccCCHHHHH
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------SVGE------DIGM----VCDMEQPLEIPVMSDLTMVL   98 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------~~g~------d~g~----l~g~~~~~gv~v~~dl~~~l   98 (220)
                      .+|+|+|- |++|--++-.... .++.++|+ |-+       ..|+      +..+    ...   ......++|.+++-
T Consensus        10 ~~I~ViGL-GYVGLPlA~~fA~-~G~~ViG~-DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~---~g~lraTtd~~~l~   83 (436)
T COG0677          10 ATIGVIGL-GYVGLPLAAAFAS-AGFKVIGV-DINQKKVDKLNRGESYIEEPDLDEVVKEAVE---SGKLRATTDPEELK   83 (436)
T ss_pred             eEEEEEcc-ccccHHHHHHHHH-cCCceEeE-eCCHHHHHHHhCCcceeecCcHHHHHHHHHh---cCCceEecChhhcc
Confidence            79999995 9999998876654 58999985 521       1121      1111    111   11245566776653


Q ss_pred             hccccCCCccEEEEccC--------ch-----hHHHHHHHHHHCCCcEEEeCC---CCCHHHHHHHHHH
Q 027650           99 GSISQSKARAVVIDFTD--------AS-----TVYDNVKQATAFGMRSVVYVP---HIQLETVSALSAF  151 (220)
Q Consensus        99 ~~~~~~~~~DVVIDfT~--------p~-----~~~~~~~~al~~G~~vVigTt---G~~~e~~~~L~~a  151 (220)
                             .+|++|.+-+        |+     ...+.+...|+.|--||++.|   |-+++-...|.+.
T Consensus        84 -------~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~  145 (436)
T COG0677          84 -------ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE  145 (436)
T ss_pred             -------cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence                   6898886532        22     234556677899999999987   7788777776664

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=91.34  E-value=1.8  Score=40.95  Aligned_cols=120  Identities=17%  Similarity=0.119  Sum_probs=66.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhh--hcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMV--CDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l--~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -+|.|+|+ |.+|.++++.+.. +|+.=+-++|.+.. ..|++..  +.. +..|-+-.....+.+.+    -++||-++
T Consensus        21 s~VlliG~-gglGsEilKNLvL-~GIg~~tIvD~~~V~~sDL~~nFfl~~-~diGk~kA~~~~~~L~e----LNp~V~i~   93 (425)
T cd01493          21 AHVCLLNA-TATGTEILKNLVL-PGIGSFTIVDGSKVDEEDLGNNFFLDA-SSLGKSRAEATCELLQE----LNPDVNGS   93 (425)
T ss_pred             CeEEEEcC-cHHHHHHHHHHHH-cCCCeEEEECCCcCchhhccccccCCh-hhcCcHHHHHHHHHHHH----HCCCCEEE
Confidence            48999997 8899999999875 78877778886321 1222210  000 01111111111222322    36777665


Q ss_pred             cc--CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          113 FT--DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       113 fT--~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      +-  .++......... -.+..+||.+ ..+......|.++|++.++|++.+..
T Consensus        94 ~~~e~~~~ll~~~~~f-~~~fdiVI~t-~~~~~~~~~L~~~c~~~~iPlI~~~s  145 (425)
T cd01493          94 AVEESPEALLDNDPSF-FSQFTVVIAT-NLPESTLLRLADVLWSANIPLLYVRS  145 (425)
T ss_pred             EEecccchhhhhHHHH-hcCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEec
Confidence            53  233322222221 2345677754 34556667788888888888886544

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PRK07877 hypothetical protein; Provisional

Probab=91.34  E-value=1.6  Score=43.92  Aligned_cols=95  Identities=16%  Similarity=0.245  Sum_probs=54.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---------------CCcchh-----hhhcCCCCCCcccc--
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---------------VGEDIG-----MVCDMEQPLEIPVM--   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~---------------~g~d~g-----~l~g~~~~~gv~v~--   91 (220)
                      ..||+|+|+ | .|..++..+... ++ -=.-++|.+.               .|+.-.     .+..+.....|..+  
T Consensus       107 ~~~V~IvG~-G-lGs~~a~~Lara-GvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~  183 (722)
T PRK07877        107 RLRIGVVGL-S-VGHAIAHTLAAE-GLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD  183 (722)
T ss_pred             cCCEEEEEe-c-HHHHHHHHHHHc-cCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence            468999998 8 999999888754 53 3334566321               111100     01111111122222  


Q ss_pred             ----CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650           92 ----SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        92 ----~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                          +++++++.      ++|+|||++..-.. +..-..|.++|+|+|.|+.
T Consensus       184 ~i~~~n~~~~l~------~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~  229 (722)
T PRK07877        184 GLTEDNVDAFLD------GLDVVVEECDSLDVKVLLREAARARRIPVLMATS  229 (722)
T ss_pred             cCCHHHHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence                24555654      68888888754433 4444778888888888775

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.28  E-value=1.2  Score=41.34  Aligned_cols=136  Identities=14%  Similarity=0.119  Sum_probs=70.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .||.|+|. |++|..+++.+.+ .+.++. ++|............+  +    ....+.+....      ++|++|-...
T Consensus         4 ~~i~iiGl-G~~G~slA~~l~~-~G~~V~-g~D~~~~~~~~~~~~~--~----~~~~~~~~~~~------~~dlvV~s~g   68 (418)
T PRK00683          4 QRVVVLGL-GVTGKSIARFLAQ-KGVYVI-GVDKSLEALQSCPYIH--E----RYLENAEEFPE------QVDLVVRSPG   68 (418)
T ss_pred             CeEEEEEE-CHHHHHHHHHHHH-CCCEEE-EEeCCccccchhHHHh--h----hhcCCcHHHhc------CCCEEEECCC
Confidence            48999997 9999999988875 466755 4665321100000000  0    01122223332      6788774332


Q ss_pred             chhHHHHHHHHHHCCCcEEE-----------------eCCCCC--HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHH
Q 027650          116 ASTVYDNVKQATAFGMRSVV-----------------YVPHIQ--LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVi-----------------gTtG~~--~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a  176 (220)
                      .....+.+..|++.|+++|.                 |-||-+  --..+-|..+-++.|.+.....|  +|+.++..  
T Consensus        69 i~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~Gn--iG~p~l~~--  144 (418)
T PRK00683         69 IKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGN--IGIPILDG--  144 (418)
T ss_pred             CCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECC--cCHHHHHH--
Confidence            33335666666666666542                 223211  01223344444555666667677  66655432  


Q ss_pred             HHhcCCCCCeEEEeccCC
Q 027650          177 ISASFHYKNVEIVESRPN  194 (220)
Q Consensus       177 ~~~~~~~~diEIiE~HH~  194 (220)
                        ..  ..|+-|+|.=.+
T Consensus       145 --~~--~~~~~V~E~~s~  158 (418)
T PRK00683        145 --MQ--QPGVRVVEISSF  158 (418)
T ss_pred             --hh--cCCEEEEEechh
Confidence              11  146667887544

>TIGR00877 purD phosphoribosylamine--glycine ligase

Probab=91.25  E-value=1.4  Score=40.78  Aligned_cols=91  Identities=12%  Similarity=0.154  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |||+|+|. |.-+..+++.+...+ ..+..++.+...|.  .....   ..-+. -+.|.+.+++- .+..++|++|-..
T Consensus         1 ~kiliiG~-G~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~d~~~l~~~-~~~~~id~vi~~~   72 (423)
T TIGR00877         1 MKVLVIGN-GGREHALAWKLAQSP-LVKYVYVAPGNAGT--ARLAK---NKNVAISITDIEALVEF-AKKKKIDLAVIGP   72 (423)
T ss_pred             CEEEEECC-ChHHHHHHHHHHhCC-CccEEEEECCCHHH--hhhcc---cccccCCCCCHHHHHHH-HHHhCCCEEEECC
Confidence            69999996 888999999987753 33333344432221  11110   00011 13565554321 1124788777332


Q ss_pred             CchhHHHHHHHHHHCCCcEE
Q 027650          115 DASTVYDNVKQATAFGMRSV  134 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vV  134 (220)
                      .-.........+.+.|++++
T Consensus        73 e~~l~~~~~~~l~~~gi~~~   92 (423)
T TIGR00877        73 EAPLVLGLVDALEEAGIPVF   92 (423)
T ss_pred             chHHHHHHHHHHHHCCCeEE
Confidence            21111234455566777655

This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.

>TIGR01319 glmL_fam conserved hypothetical protein

Probab=91.22  E-value=3.8  Score=39.17  Aligned_cols=119  Identities=14%  Similarity=0.122  Sum_probs=81.5

Q ss_pred             ccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccc
Q 027650           23 RFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS  102 (220)
Q Consensus        23 ~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~  102 (220)
                      ....||++.-+  +|+.++|....|-.+-++.+....+..+..++..+..                  -.+++++..   
T Consensus        62 ~~~acSSAaGG--Lkmvv~Glv~~~TaeAAk~AAlgAGA~V~~~~a~~l~------------------~~~l~~I~~---  118 (463)
T TIGR01319        62 AKKACSSAAGG--LAMAAIGLVPEITAEAAKRAAHGAGAKIANVYAYDLN------------------NKDIEAIEE---  118 (463)
T ss_pred             eEEEEcccCCC--hheEEEeccchhhHHHHHHHHhcCCcEEEEEEeecCC------------------HHHHHHHhh---
Confidence            56688887644  6899999999999888888888889888887764321                  124556655   


Q ss_pred             cCCCccEEEEcc-----CchhHHHHHHHHHHCC--CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          103 QSKARAVVIDFT-----DASTVYDNVKQATAFG--MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       103 ~~~~~DVVIDfT-----~p~~~~~~~~~al~~G--~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                        .+||+|+-.-     ..+....|++...+.+  +|||..   -+.+-.++++++-.++++.+++.+|-=+-+
T Consensus       119 --~~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~~pIIyA---GN~~a~~~V~~il~~~~~~~~i~eNV~P~i  187 (463)
T TIGR01319       119 --SNLDIILFAGGTDGGEEECGIHNAKMLAEHGLDCAIIVA---GNKDIQDEVQEIFDHADIFYRITDNVLPDL  187 (463)
T ss_pred             --cCCCEEEEeCCcCCCchHHHHHHHHHHHhcCCCCcEEEe---CCHHHHHHHHHHHhcCCceEEecCCcCCCC
Confidence              4899887332     3455567776666654  566652   344445666666667788988888854444

This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.17  E-value=5.3  Score=37.82  Aligned_cols=30  Identities=17%  Similarity=0.185  Sum_probs=24.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||+|+|. |+-|+..++.+. . +.+++ ++|.
T Consensus         7 ~~v~v~G~-G~sG~a~~~~L~-~-g~~v~-v~D~   36 (454)
T PRK01368          7 QKIGVFGL-GKTGISVYEELQ-N-KYDVI-VYDD   36 (454)
T ss_pred             CEEEEEee-cHHHHHHHHHHh-C-CCEEE-EECC
Confidence            48999996 999999999988 4 88765 5773

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=91.02  E-value=0.57  Score=42.49  Aligned_cols=82  Identities=23%  Similarity=0.357  Sum_probs=49.9

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEccCc
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTDA  116 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT~p  116 (220)
                      .+|.|+|.++|+..++.++. .|+.++ ++.|+.     +.|-        .+..++++.-.     .+.. +++|||.+
T Consensus        52 AVVTGaTDGIGKayA~eLAk-rG~nvv-LIsRt~-----~KL~--------~v~kEI~~~~~-----vev~~i~~Dft~~  111 (312)
T KOG1014|consen   52 AVVTGATDGIGKAYARELAK-RGFNVV-LISRTQ-----EKLE--------AVAKEIEEKYK-----VEVRIIAIDFTKG  111 (312)
T ss_pred             EEEECCCCcchHHHHHHHHH-cCCEEE-EEeCCH-----HHHH--------HHHHHHHHHhC-----cEEEEEEEecCCC
Confidence            67899999999999999987 799955 454431     2211        01112222211     1233 57899998


Q ss_pred             hhHHHHHHHHHH-CCCcEEEeCCC
Q 027650          117 STVYDNVKQATA-FGMRSVVYVPH  139 (220)
Q Consensus       117 ~~~~~~~~~al~-~G~~vVigTtG  139 (220)
                      +..++.++..+. -.+-++|-.-|
T Consensus       112 ~~~ye~i~~~l~~~~VgILVNNvG  135 (312)
T KOG1014|consen  112 DEVYEKLLEKLAGLDVGILVNNVG  135 (312)
T ss_pred             chhHHHHHHHhcCCceEEEEeccc
Confidence            887776655444 44666655544

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=91.01  E-value=1  Score=42.29  Aligned_cols=84  Identities=15%  Similarity=0.188  Sum_probs=47.9

Q ss_pred             CceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC-CHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVID  112 (220)
                      +.||.|+|. |+.|.. +++.+.+ .+.++.+ .|.... ....++.    ..|+.++. ...+.+.      ++|+|| 
T Consensus         7 ~~~v~viG~-G~sG~s~~a~~L~~-~G~~V~~-~D~~~~-~~~~~l~----~~gi~~~~~~~~~~~~------~~d~vv-   71 (461)
T PRK00421          7 IKRIHFVGI-GGIGMSGLAEVLLN-LGYKVSG-SDLKES-AVTQRLL----ELGAIIFIGHDAENIK------DADVVV-   71 (461)
T ss_pred             CCEEEEEEE-chhhHHHHHHHHHh-CCCeEEE-ECCCCC-hHHHHHH----HCCCEEeCCCCHHHCC------CCCEEE-
Confidence            358999997 999999 6887765 5888764 664321 1222322    34555542 2223333      689887 


Q ss_pred             ccC--chhHHHHHHHHHHCCCcEE
Q 027650          113 FTD--ASTVYDNVKQATAFGMRSV  134 (220)
Q Consensus       113 fT~--p~~~~~~~~~al~~G~~vV  134 (220)
                      .|+  |.. .+.++.|.++|++++
T Consensus        72 ~spgi~~~-~~~~~~a~~~~i~i~   94 (461)
T PRK00421         72 YSSAIPDD-NPELVAARELGIPVV   94 (461)
T ss_pred             ECCCCCCC-CHHHHHHHHCCCcEE
Confidence            443  322 234455555665553

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=91.00  E-value=3.5  Score=37.91  Aligned_cols=87  Identities=11%  Similarity=0.059  Sum_probs=47.8

Q ss_pred             HHHHHHHHHhcCCcEEEEEEecCCCC---cchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCchh-HHHHH
Q 027650           48 GRAAVIAVTKARGMEVAGAIDSHSVG---EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST-VYDNV  123 (220)
Q Consensus        48 G~~i~~~i~~~~~~eLvg~vd~~~~g---~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~-~~~~~  123 (220)
                      |+.+++.+.. .+++|. ++|+...-   .....+.    ..|+.+.++..++..      ++|+||-+.+-.. +.+.+
T Consensus        32 GspMArnLlk-AGheV~-V~Drnrsa~e~e~~e~La----eaGA~~AaS~aEAAa------~ADVVIL~LPd~aaV~eVl   99 (341)
T TIGR01724        32 GSRMAIEFAM-AGHDVV-LAEPNREFMSDDLWKKVE----DAGVKVVSDDKEAAK------HGEIHVLFTPFGKGTFSIA   99 (341)
T ss_pred             HHHHHHHHHH-CCCEEE-EEeCChhhhhhhhhHHHH----HCCCeecCCHHHHHh------CCCEEEEecCCHHHHHHHH
Confidence            6677777765 488886 56653210   0111232    346777888888876      7999985443222 23443


Q ss_pred             H---HHHHCCCcEEEeCCCCCHHHHHH
Q 027650          124 K---QATAFGMRSVVYVPHIQLETVSA  147 (220)
Q Consensus       124 ~---~al~~G~~vVigTtG~~~e~~~~  147 (220)
                      .   ..+..|. +||-++-.+++...+
T Consensus       100 ~GLaa~L~~Ga-IVID~STIsP~t~~~  125 (341)
T TIGR01724       100 RTIIEHVPENA-VICNTCTVSPVVLYY  125 (341)
T ss_pred             HHHHhcCCCCC-EEEECCCCCHHHHHH
Confidence            2   3344564 555555555544444

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=90.90  E-value=0.73  Score=41.15  Aligned_cols=131  Identities=15%  Similarity=0.101  Sum_probs=69.4

Q ss_pred             eEE-EEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCCCCCccc--cC-CHHHHHhccccCCCccEEE
Q 027650           37 KVI-INGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQPLEIPV--MS-DLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        37 kV~-V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~g~l~g~~~~~gv~v--~~-dl~~~l~~~~~~~~~DVVI  111 (220)
                      |++ |.|+||.+|++.+.++..+|.++|.-.-. ....|+....-....+..-.|-  .+ ..+++-.+  ...++|+|+
T Consensus         5 k~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~--~F~ecDIvf   82 (361)
T KOG4777|consen    5 KSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTAD--SFNECDIVF   82 (361)
T ss_pred             cccceeeccchhHHHHHHHhccCCcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChh--hcccccEEE
Confidence            566 99999999999999999999988765522 2344554321110100000110  00 11222111  113688776


Q ss_pred             EccC-chhHHHHHHHHHHCCCcEEEeCC-------------CCCHHHHHHHHHHh--hhcCceEEEc-CCCcHHHH
Q 027650          112 DFTD-ASTVYDNVKQATAFGMRSVVYVP-------------HIQLETVSALSAFC--DKASMGCLIA-PTLSIGSI  170 (220)
Q Consensus       112 DfT~-p~~~~~~~~~al~~G~~vVigTt-------------G~~~e~~~~L~~aA--~~~~v~vvia-pNfS~Gv~  170 (220)
                       |.. .+-.-+.-+.+.++|+-+|.-..             -.++|.++-|+.--  .+.+-+.+|+ ||-|.-+.
T Consensus        83 -sgldad~ageiek~f~eag~iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~  157 (361)
T KOG4777|consen   83 -SGLDADIAGEIEKLFAEAGTIIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAIC  157 (361)
T ss_pred             -ecCCchhhhhhhHHHHhcCeEEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCceEEecCCCCeeeE
Confidence             433 33334556777777776665432             33666655544321  1234455554 78776654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.88  E-value=0.57  Score=44.12  Aligned_cols=31  Identities=29%  Similarity=0.437  Sum_probs=24.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||.|+|+ |..|..+++.+.+ .+.+++ ++|.
T Consensus        17 ~~v~viG~-G~~G~~~A~~L~~-~G~~V~-~~d~   47 (480)
T PRK01438         17 LRVVVAGL-GVSGFAAADALLE-LGARVT-VVDD   47 (480)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEeC
Confidence            48999997 9999999988875 578865 4563

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.80  E-value=1.2  Score=41.74  Aligned_cols=31  Identities=32%  Similarity=0.304  Sum_probs=24.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||.|+|. |+.|...++.+.. .+.++. ++|.
T Consensus        10 ~~i~viG~-G~~G~~~a~~l~~-~G~~v~-~~D~   40 (460)
T PRK01390         10 KTVAVFGL-GGSGLATARALVA-GGAEVI-AWDD   40 (460)
T ss_pred             CEEEEEee-cHhHHHHHHHHHH-CCCEEE-EECC
Confidence            48999997 9999999887765 478755 4674

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=90.78  E-value=2.7  Score=38.52  Aligned_cols=91  Identities=16%  Similarity=0.049  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhcCCcEEEEEEecCCCC--c-chhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCchh-HHHHH
Q 027650           48 GRAAVIAVTKARGMEVAGAIDSHSVG--E-DIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAST-VYDNV  123 (220)
Q Consensus        48 G~~i~~~i~~~~~~eLvg~vd~~~~g--~-d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~-~~~~~  123 (220)
                      |..++..+.+. +.++.. +|++...  . ....+.    ..|+.+.+|..++..      ++|+||-+.++.. ..+.+
T Consensus        32 G~~MA~~La~a-G~~V~v-~Dr~~~~l~~~~~~~l~----~~Gi~~asd~~eaa~------~ADvVIlaVP~~~~v~~Vl   99 (342)
T PRK12557         32 GSRMAIEFAEA-GHDVVL-AEPNRSILSEELWKKVE----DAGVKVVSDDAEAAK------HGEIHILFTPFGKKTVEIA   99 (342)
T ss_pred             HHHHHHHHHhC-CCeEEE-EECCHHHhhHHHHHHHH----HCCCEEeCCHHHHHh------CCCEEEEECCCcHHHHHHH
Confidence            55666666553 666654 5653210  0 111121    346777788888775      7999996666555 33443


Q ss_pred             H---HHHHCCCcEEEeCCCCCHHHH-HHHHHH
Q 027650          124 K---QATAFGMRSVVYVPHIQLETV-SALSAF  151 (220)
Q Consensus       124 ~---~al~~G~~vVigTtG~~~e~~-~~L~~a  151 (220)
                      .   ..+..|.-+| -++..++... +.+.+.
T Consensus       100 ~~L~~~L~~g~IVI-d~ST~~~~~~s~~l~~~  130 (342)
T PRK12557        100 KNILPHLPENAVIC-NTCTVSPVVLYYSLEGE  130 (342)
T ss_pred             HHHHhhCCCCCEEE-EecCCCHHHHHHHHHHH
Confidence            3   3334555444 4444455544 455444

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=90.78  E-value=0.97  Score=37.26  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=24.7

Q ss_pred             CCCceEEEEcCCCHH-HHHHHHHHHhcCCcEEEEEEec
Q 027650           33 QSNIKVIINGAVKEI-GRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrM-G~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      -...||.|+|+ |.| |+.+++.+.+. +.++ -++++
T Consensus        42 l~gk~vlViG~-G~~~G~~~a~~L~~~-g~~V-~v~~r   76 (168)
T cd01080          42 LAGKKVVVVGR-SNIVGKPLAALLLNR-NATV-TVCHS   76 (168)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHhhC-CCEE-EEEEC
Confidence            34469999997 987 88899988764 6664 34544

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08219 short chain dehydrogenase; Provisional

Probab=90.77  E-value=0.41  Score=39.41  Aligned_cols=31  Identities=19%  Similarity=0.191  Sum_probs=26.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |+++.|.|++|.+|+.+++.+.+.  .+++++.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~   33 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT--HTLLLGG   33 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh--CCEEEEe
Confidence            468999999999999999999876  7766654

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=90.77  E-value=1.7  Score=39.12  Aligned_cols=97  Identities=14%  Similarity=0.119  Sum_probs=53.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCccccC---CHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMS---DLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~-g~~~~~gv~v~~---dl~~~l~~~~~~~~~DVVI  111 (220)
                      -+|.|.|++|.+|...+..+.. -+.++++...+.   .....+. .++ ...+.-+.   ++.+.+.... ...+|+++
T Consensus       160 ~~VlV~GaaG~vG~~aiqlAk~-~G~~Vi~~~~~~---~k~~~~~~~lG-a~~vi~~~~~~~~~~~i~~~~-~~gvD~v~  233 (348)
T PLN03154        160 DSVFVSAASGAVGQLVGQLAKL-HGCYVVGSAGSS---QKVDLLKNKLG-FDEAFNYKEEPDLDAALKRYF-PEGIDIYF  233 (348)
T ss_pred             CEEEEecCccHHHHHHHHHHHH-cCCEEEEEcCCH---HHHHHHHHhcC-CCEEEECCCcccHHHHHHHHC-CCCcEEEE
Confidence            3799999999999999877665 588877655432   1111111 111 11111121   3444332211 12589999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      |++........+......|.=+++|..
T Consensus       234 d~vG~~~~~~~~~~l~~~G~iv~~G~~  260 (348)
T PLN03154        234 DNVGGDMLDAALLNMKIHGRIAVCGMV  260 (348)
T ss_pred             ECCCHHHHHHHHHHhccCCEEEEECcc
Confidence            988755444444444455655567754

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=90.72  E-value=3.8  Score=34.19  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=26.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .+.|.|++|.+|+.+++.+.+. +.+++...+
T Consensus         5 ~~lVtG~s~giG~~~a~~l~~~-G~~vv~~~~   35 (246)
T PRK12938          5 IAYVTGGMGGIGTSICQRLHKD-GFKVVAGCG   35 (246)
T ss_pred             EEEEECCCChHHHHHHHHHHHc-CCEEEEEcC
Confidence            5799999999999999999875 788877554

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.67  E-value=1.2  Score=39.97  Aligned_cols=93  Identities=16%  Similarity=0.220  Sum_probs=50.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc--c--CCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--M--SDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v--~--~dl~~~l~~~~~~~~~DVVI  111 (220)
                      -+|+|.|+ |.+|...+..+.. -+.+++++..+....+... ++   ..+|+..  +  .+..+ ...   ...+|+||
T Consensus       174 ~~vlI~G~-G~vG~~a~q~ak~-~G~~vi~~~~~~~~~~~~~-~~---~~~Ga~~v~~~~~~~~~-~~~---~~~~d~vi  243 (355)
T cd08230         174 RRALVLGA-GPIGLLAALLLRL-RGFEVYVLNRRDPPDPKAD-IV---EELGATYVNSSKTPVAE-VKL---VGEFDLII  243 (355)
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHH-HH---HHcCCEEecCCccchhh-hhh---cCCCCEEE
Confidence            37999997 9999999877665 4778776542110011111 11   0222221  1  12222 111   13689999


Q ss_pred             EccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650          112 DFTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       112 DfT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                      |++..... .+.+......|.-+++|.+
T Consensus       244 d~~g~~~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         244 EATGVPPLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             ECcCCHHHHHHHHHHccCCcEEEEEecC
Confidence            99864434 4444545556666667875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK09186 flagellin modification protein A; Provisional

Probab=90.58  E-value=1.7  Score=36.43  Aligned_cols=31  Identities=35%  Similarity=0.324  Sum_probs=26.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|++|+.+++.+.+ .+.+++...
T Consensus         5 k~vlItGas~giG~~~a~~l~~-~g~~v~~~~   35 (256)
T PRK09186          5 KTILITGAGGLIGSALVKAILE-AGGIVIAAD   35 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEEe
Confidence            5799999999999999999976 478887763

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=90.58  E-value=2.2  Score=38.47  Aligned_cols=107  Identities=19%  Similarity=0.103  Sum_probs=56.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC------CCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      |||.|+|+ |.||..+.-.+.+.. ..+..+..++.      .|-.+....+  ...-.....+..+.+      ..+|+
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~--~~~~~~~~~~~~~~~------~~~Dl   70 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGG--NFTTPVVAATDAEAL------GPADL   70 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCC--ccccccccccChhhc------CCCCE
Confidence            69999997 999999999888775 34443333221      1222111111  000011111212222      37999


Q ss_pred             EEEccCchhH---HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhh
Q 027650          110 VIDFTDASTV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (220)
Q Consensus       110 VIDfT~p~~~---~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~  154 (220)
                      ||.++-.-..   .+.+...+.....|++==.|+.-++  +|++...+
T Consensus        71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e--~l~~~~~~  116 (307)
T COG1893          71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE--ELRKILPK  116 (307)
T ss_pred             EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH--HHHHhCCc
Confidence            8877754433   4444444444555554445776544  67776655

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=90.57  E-value=2.2  Score=37.86  Aligned_cols=103  Identities=21%  Similarity=0.235  Sum_probs=64.4

Q ss_pred             ccceeeeecccccccccCCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC
Q 027650            4 LGCQFHCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME   83 (220)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~   83 (220)
                      -||-.--|..-||+..-.+.--|-+..-++..-||.|.|+.|..|..++.++...-+-+-|-..|..+   ....+...+
T Consensus        13 ag~~~~~R~~~Isp~~v~~~A~FH~~s~~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~K---Pp~~V~~~G   89 (366)
T KOG2774|consen   13 AGCWLPVRRNGISPLPVDPLARFHTISQTQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVK---PPANVTDVG   89 (366)
T ss_pred             CcccccccccCCCcccCCcccccccccccCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccC---CchhhcccC
Confidence            36666667777776665555545554456667899999999999999999998876666665555211   111111111


Q ss_pred             CC---CCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           84 QP---LEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        84 ~~---~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                       +   .++--+.++++....    ...|-+|.|+
T Consensus        90 -PyIy~DILD~K~L~eIVVn----~RIdWL~HfS  118 (366)
T KOG2774|consen   90 -PYIYLDILDQKSLEEIVVN----KRIDWLVHFS  118 (366)
T ss_pred             -CchhhhhhccccHHHhhcc----cccceeeeHH
Confidence             1   122224566776553    5788888775

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=90.56  E-value=0.46  Score=42.80  Aligned_cols=93  Identities=10%  Similarity=0.038  Sum_probs=51.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CC-CCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQ-PLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~-~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      -+++|+|+ |..++.+++++...-.++=+-++++..  ..+.++... .. ...+...+|.++++.      ++|+|+=+
T Consensus       129 ~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~--~~~~~~~~~~~~~~~~v~~~~~~~~av~------~aDii~ta  199 (313)
T PF02423_consen  129 RTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSP--ERAEAFAARLRDLGVPVVAVDSAEEAVR------GADIIVTA  199 (313)
T ss_dssp             -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSH--HHHHHHHHHHHCCCTCEEEESSHHHHHT------TSSEEEE-
T ss_pred             ceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccCh--hHHHHHHHhhccccccceeccchhhhcc------cCCEEEEc
Confidence            38999996 999999999998765688888998742  122222211 11 233445789999986      79999955


Q ss_pred             cCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650          114 TDASTVYDNV-KQATAFGMRSV-VYV  137 (220)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vV-igT  137 (220)
                      |+.....+.+ ...++.|.++. ||.
T Consensus       200 T~s~~~~P~~~~~~l~~g~hi~~iGs  225 (313)
T PF02423_consen  200 TPSTTPAPVFDAEWLKPGTHINAIGS  225 (313)
T ss_dssp             ---SSEEESB-GGGS-TT-EEEE-S-
T ss_pred             cCCCCCCccccHHHcCCCcEEEEecC
Confidence            5432200111 23567888876 454

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=90.49  E-value=1.5  Score=39.76  Aligned_cols=21  Identities=29%  Similarity=0.594  Sum_probs=18.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHh
Q 027650           37 KVIINGAVKEIGRAAVIAVTK   57 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~   57 (220)
                      ||+|+|++|++|..++..+..
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~   21 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIAR   21 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHh
Confidence            799999989999999988775

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=90.44  E-value=1.1  Score=38.95  Aligned_cols=98  Identities=10%  Similarity=0.057  Sum_probs=52.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC--CHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      -+|.|+|++|.+|+.++..+.. -+.+++.+.+....-..+.+ .|..   .+.-+.  ++.+.+.++..+..+|+++|+
T Consensus       141 ~~vlI~g~~g~ig~~~~~~a~~-~G~~v~~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  215 (324)
T cd08292         141 QWLIQNAAGGAVGKLVAMLAAA-RGINVINLVRRDAGVAELRA-LGIG---PVVSTEQPGWQDKVREAAGGAPISVALDS  215 (324)
T ss_pred             CEEEEcccccHHHHHHHHHHHH-CCCeEEEEecCHHHHHHHHh-cCCC---EEEcCCCchHHHHHHHHhCCCCCcEEEEC
Confidence            4799999999999999886665 58888887765321111111 1110   011111  222212111112369999998


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      +......+.+..+...|.=+.+|.+
T Consensus       216 ~g~~~~~~~~~~l~~~g~~v~~g~~  240 (324)
T cd08292         216 VGGKLAGELLSLLGEGGTLVSFGSM  240 (324)
T ss_pred             CCChhHHHHHHhhcCCcEEEEEecC
Confidence            7655444444444445555556654

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PLN02306 hydroxypyruvate reductase

Probab=90.38  E-value=2.6  Score=39.25  Aligned_cols=71  Identities=20%  Similarity=0.139  Sum_probs=42.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchh---hhhcC-----C-CCCCccccCCHHHHHhccccCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIG---MVCDM-----E-QPLEIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g---~l~g~-----~-~~~gv~v~~dl~~~l~~~~~~~  105 (220)
                      ..+|+|+|. |++|+.+++.+...=++++.+ +|+... .+..   ...+.     + ...++..+.++++++.      
T Consensus       165 gktvGIiG~-G~IG~~vA~~l~~~fGm~V~~-~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~------  235 (386)
T PLN02306        165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQS-TRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLR------  235 (386)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCEEEE-ECCCCc-hhhhhhhhhhcccccccccccccccccCCHHHHHh------
Confidence            458999996 999999999875333888875 565311 1100   00100     0 0011222468999997      


Q ss_pred             CccEEEEcc
Q 027650          106 ARAVVIDFT  114 (220)
Q Consensus       106 ~~DVVIDfT  114 (220)
                      .+|+|+...
T Consensus       236 ~sDiV~lh~  244 (386)
T PLN02306        236 EADVISLHP  244 (386)
T ss_pred             hCCEEEEeC
Confidence            799888543

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=90.31  E-value=2.3  Score=36.01  Aligned_cols=85  Identities=18%  Similarity=0.203  Sum_probs=50.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc-CCHH-HHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLT-MVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~-~dl~-~~l~~~~~~~~~DVVIDf  113 (220)
                      .||.|+|+ |++|..-++.+... +..++ +++++. ...+.++..   ...+... .+++ ..+.      ++|.||-.
T Consensus        10 k~vlVvGg-G~va~rk~~~Ll~~-ga~Vt-Vvsp~~-~~~l~~l~~---~~~i~~~~~~~~~~dl~------~~~lVi~a   76 (205)
T TIGR01470        10 RAVLVVGG-GDVALRKARLLLKA-GAQLR-VIAEEL-ESELTLLAE---QGGITWLARCFDADILE------GAFLVIAA   76 (205)
T ss_pred             CeEEEECc-CHHHHHHHHHHHHC-CCEEE-EEcCCC-CHHHHHHHH---cCCEEEEeCCCCHHHhC------CcEEEEEC
Confidence            48999997 99999999888764 66655 556543 233333332   1123221 1211 2232      78888855


Q ss_pred             cCch-hHHHHHHHHHHCCCcE
Q 027650          114 TDAS-TVYDNVKQATAFGMRS  133 (220)
Q Consensus       114 T~p~-~~~~~~~~al~~G~~v  133 (220)
                      |.-. ........|.+.|+++
T Consensus        77 t~d~~ln~~i~~~a~~~~ilv   97 (205)
T TIGR01470        77 TDDEELNRRVAHAARARGVPV   97 (205)
T ss_pred             CCCHHHHHHHHHHHHHcCCEE
Confidence            5433 3356667777888877

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=90.31  E-value=3.4  Score=38.31  Aligned_cols=37  Identities=16%  Similarity=0.242  Sum_probs=30.7

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..+.+|.|+|++|..|+.+++.+.+.....-+-++|.
T Consensus         2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~   38 (361)
T KOG1430|consen    2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDK   38 (361)
T ss_pred             CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEecc
Confidence            3467899999999999999999998775666667885

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=90.30  E-value=1.8  Score=37.75  Aligned_cols=96  Identities=16%  Similarity=0.167  Sum_probs=51.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|.|+|++|.+|..+++.+.. -+.++++...++.   ....+...+ ...+..+  .+..+.+.... ...+|+++|+.
T Consensus       146 ~vlI~ga~g~vG~~aiqlA~~-~G~~vi~~~~s~~---~~~~l~~~G-a~~vi~~~~~~~~~~v~~~~-~~gvd~vld~~  219 (329)
T cd08294         146 TVVVNGAAGAVGSLVGQIAKI-KGCKVIGCAGSDD---KVAWLKELG-FDAVFNYKTVSLEEALKEAA-PDGIDCYFDNV  219 (329)
T ss_pred             EEEEecCccHHHHHHHHHHHH-cCCEEEEEeCCHH---HHHHHHHcC-CCEEEeCCCccHHHHHHHHC-CCCcEEEEECC
Confidence            799999999999999887765 5888877664321   111111111 0011111  13322221110 13589999987


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCC
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      ........+......|.-+.+|..
T Consensus       220 g~~~~~~~~~~l~~~G~iv~~g~~  243 (329)
T cd08294         220 GGEFSSTVLSHMNDFGRVAVCGSI  243 (329)
T ss_pred             CHHHHHHHHHhhccCCEEEEEcch
Confidence            664444444444455655556653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK05872 short chain dehydrogenase; Provisional

Probab=90.24  E-value=2.4  Score=37.14  Aligned_cols=30  Identities=27%  Similarity=0.401  Sum_probs=25.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+
T Consensus        10 k~vlItGas~gIG~~ia~~l~~-~G~~V~~~   39 (296)
T PRK05872         10 KVVVVTGAARGIGAELARRLHA-RGAKLALV   39 (296)
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCEEEEE
Confidence            4799999999999999999876 57776654

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=90.23  E-value=4.3  Score=39.79  Aligned_cols=128  Identities=15%  Similarity=0.128  Sum_probs=66.9

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -++.||+|+|+ |..|+.++.++.+. +++++.+ |++.. .....++.   ..=+.-+.|.+.+.+-.   .++|++. 
T Consensus        20 ~~~k~IgIIGg-Gqlg~mla~aA~~l-G~~Vi~l-d~~~~-apa~~~AD---~~~v~~~~D~~~l~~~a---~~~dvIt-   88 (577)
T PLN02948         20 VSETVVGVLGG-GQLGRMLCQAASQM-GIKVKVL-DPLED-CPASSVAA---RHVVGSFDDRAAVREFA---KRCDVLT-   88 (577)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEE-eCCCC-CchhhhCc---eeeeCCCCCHHHHHHHH---HHCCEEE-
Confidence            34479999996 99999999988764 8888875 54321 11111211   11111146666553210   2578764 


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEe-----------------------CCCC-CHHHHHHHHHHhhhcCceEEEcCC----
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVY-----------------------VPHI-QLETVSALSAFCDKASMGCLIAPT----  164 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVig-----------------------TtG~-~~e~~~~L~~aA~~~~v~vviapN----  164 (220)
                      |.....-.+.+..+.+.|+++...                       |+-+ .-...+.+.++.++-|-|+++=|.    
T Consensus        89 ~e~e~v~~~~l~~le~~gi~v~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~ig~P~VvKP~~ggs  168 (577)
T PLN02948         89 VEIEHVDVDTLEALEKQGVDVQPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLFGYPLMLKSRRLAY  168 (577)
T ss_pred             EecCCCCHHHHHHHHhcCCccCCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhcCCcEEEEeCCCCC
Confidence            332221122234444555443110                       1111 111123456667777889998886    


Q ss_pred             CcHHHHH
Q 027650          165 LSIGSIL  171 (220)
Q Consensus       165 fS~Gv~l  171 (220)
                      .|.|+.+
T Consensus       169 ~g~Gv~~  175 (577)
T PLN02948        169 DGRGNAV  175 (577)
T ss_pred             CCCCeEE
Confidence            3777754

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=90.21  E-value=1.9  Score=38.55  Aligned_cols=90  Identities=18%  Similarity=0.197  Sum_probs=49.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCccc---c--CCHHHHHhccccCCCccEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPV---M--SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~l~g~~~~~gv~v---~--~dl~~~l~~~~~~~~~DVV  110 (220)
                      +|+|+|+ |.+|...+..+.. -+.+ +++ ++...  ... +++.   .+|+..   +  .++++....   ...+|++
T Consensus       172 ~VlV~G~-G~vG~~aiqlak~-~G~~~Vi~-~~~~~--~~~-~~a~---~lGa~~vi~~~~~~~~~~~~~---~g~~D~v  239 (343)
T PRK09880        172 RVFVSGV-GPIGCLIVAAVKT-LGAAEIVC-ADVSP--RSL-SLAR---EMGADKLVNPQNDDLDHYKAE---KGYFDVS  239 (343)
T ss_pred             EEEEECC-CHHHHHHHHHHHH-cCCcEEEE-EeCCH--HHH-HHHH---HcCCcEEecCCcccHHHHhcc---CCCCCEE
Confidence            7999997 9999999887665 4774 544 44321  111 1110   122211   1  234444331   1248999


Q ss_pred             EEccCchhHHHHHHHHH-HCCCcEEEeCC
Q 027650          111 IDFTDASTVYDNVKQAT-AFGMRSVVYVP  138 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al-~~G~~vVigTt  138 (220)
                      ||++......+.+..++ ..|+=+.+|.+
T Consensus       240 id~~G~~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        240 FEVSGHPSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             EECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence            99987544444444444 55555557754

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=90.21  E-value=0.26  Score=43.53  Aligned_cols=91  Identities=11%  Similarity=0.120  Sum_probs=53.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc---CCcE------EEEEEecCC---CCc-ch----hh---hhcCCCCCCccccCCHH
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA---RGME------VAGAIDSHS---VGE-DI----GM---VCDMEQPLEIPVMSDLT   95 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~---~~~e------Lvg~vd~~~---~g~-d~----g~---l~g~~~~~gv~v~~dl~   95 (220)
                      .||.++|+ |-.|-.+++.+...   +++.      =+..+|++-   .++ +.    ..   +..     .-....++.
T Consensus        26 ~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~-----~~~~~~~L~   99 (254)
T cd00762          26 HKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFAN-----PERESGDLE   99 (254)
T ss_pred             cEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcC-----cccccCCHH
Confidence            69999998 99999999988653   2211      335667420   011 11    11   111     112246888


Q ss_pred             HHHhccccCCCccEEEEccC-chhH-HHHHHHHHHC-CCcEEEe
Q 027650           96 MVLGSISQSKARAVVIDFTD-ASTV-YDNVKQATAF-GMRSVVY  136 (220)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~-p~~~-~~~~~~al~~-G~~vVig  136 (220)
                      +++..    -++||+|=.|. |... .+.++...++ ..|+|.-
T Consensus       100 eav~~----~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa  139 (254)
T cd00762         100 DAVEA----AKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA  139 (254)
T ss_pred             HHHHh----hCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence            88874    37999998776 6555 4555554433 3566643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK08628 short chain dehydrogenase; Provisional

Probab=90.17  E-value=1.4  Score=37.12  Aligned_cols=31  Identities=23%  Similarity=0.220  Sum_probs=25.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .++.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus         8 ~~ilItGasggiG~~la~~l~~~-G~~v~~~~   38 (258)
T PRK08628          8 KVVIVTGGASGIGAAISLRLAEE-GAIPVIFG   38 (258)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHc-CCcEEEEc
Confidence            47999999999999999999864 67776543

>PRK12827 short chain dehydrogenase; Provisional

Probab=90.06  E-value=2.5  Score=35.10  Aligned_cols=31  Identities=26%  Similarity=0.411  Sum_probs=26.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      ++|.|.|++|.+|+.+++.+.++ +.+++.+.
T Consensus         7 ~~ilItGasg~iG~~la~~l~~~-g~~v~~~~   37 (249)
T PRK12827          7 RRVLITGGSGGLGRAIAVRLAAD-GADVIVLD   37 (249)
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-CCeEEEEc
Confidence            68999999999999999998864 77877654

>PRK06057 short chain dehydrogenase; Provisional

Probab=90.00  E-value=1.9  Score=36.42  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=25.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .+|.|+|++|.+|+.+++.+.+. +.+++.+
T Consensus         8 ~~vlItGasggIG~~~a~~l~~~-G~~v~~~   37 (255)
T PRK06057          8 RVAVITGGGSGIGLATARRLAAE-GATVVVG   37 (255)
T ss_pred             CEEEEECCCchHHHHHHHHHHHc-CCEEEEE
Confidence            58999999999999999999864 7887665

>PRK06196 oxidoreductase; Provisional

Probab=89.98  E-value=1.6  Score=38.47  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=26.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus        27 k~vlITGasggIG~~~a~~L~~-~G~~Vv~~~   57 (315)
T PRK06196         27 KTAIVTGGYSGLGLETTRALAQ-AGAHVIVPA   57 (315)
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEe
Confidence            5799999999999999999876 478887654

>PRK07814 short chain dehydrogenase; Provisional

Probab=89.95  E-value=1.8  Score=36.93  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=26.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .++.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus        11 ~~vlItGasggIG~~~a~~l~~-~G~~Vi~~~   41 (263)
T PRK07814         11 QVAVVTGAGRGLGAAIALAFAE-AGADVLIAA   41 (263)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            5799999999999999999887 478987654

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.94  E-value=0.64  Score=38.47  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=27.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +.+|.|.|++|.+|+.+++.+.+ .+.+++.++.+
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~-~g~~v~~~~~~   39 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLAR-AGADVVVHYRS   39 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHH-CCCeEEEEeCC
Confidence            45899999999999999999876 47787665554

>PLN02740 Alcohol dehydrogenase-like

Probab=89.93  E-value=1.6  Score=39.72  Aligned_cols=93  Identities=14%  Similarity=0.159  Sum_probs=51.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCcc--c-cC----CHHHHHhccccCCCcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIP--V-MS----DLTMVLGSISQSKARA  108 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v-~~----dl~~~l~~~~~~~~~D  108 (220)
                      +|+|+|+ |.+|...+..+... +. +++++ ++..  .....+.    .+|+.  + +.    ++.+.+.++.. ..+|
T Consensus       201 ~VlV~G~-G~vG~~a~q~ak~~-G~~~Vi~~-~~~~--~r~~~a~----~~Ga~~~i~~~~~~~~~~~~v~~~~~-~g~d  270 (381)
T PLN02740        201 SVAIFGL-GAVGLAVAEGARAR-GASKIIGV-DINP--EKFEKGK----EMGITDFINPKDSDKPVHERIREMTG-GGVD  270 (381)
T ss_pred             EEEEECC-CHHHHHHHHHHHHC-CCCcEEEE-cCCh--HHHHHHH----HcCCcEEEecccccchHHHHHHHHhC-CCCC
Confidence            7999997 99999998877654 66 46554 4321  1111111    12221  1 11    13232221111 1599


Q ss_pred             EEEEccCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          109 VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      ++||++-..........+++.  |.-+++|.++
T Consensus       271 vvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~  303 (381)
T PLN02740        271 YSFECAGNVEVLREAFLSTHDGWGLTVLLGIHP  303 (381)
T ss_pred             EEEECCCChHHHHHHHHhhhcCCCEEEEEccCC
Confidence            999998754455555455544  7777788764

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=89.89  E-value=1.2  Score=44.87  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=26.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..-||+|+|+ |-||..|+..+... +++++ ++|.
T Consensus       334 ~i~~v~ViGa-G~MG~gIA~~~a~~-G~~V~-l~d~  366 (737)
T TIGR02441       334 PVKTLAVLGA-GLMGAGIAQVSVDK-GLKTV-LKDA  366 (737)
T ss_pred             cccEEEEECC-CHhHHHHHHHHHhC-CCcEE-EecC
Confidence            4458999998 99999999887764 88887 4664

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=89.89  E-value=1.7  Score=34.03  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=24.3

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |+|+|+ |.||..++-.+.+ .+.++.-+..+
T Consensus         1 I~I~G~-GaiG~~~a~~L~~-~g~~V~l~~r~   30 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQ-AGHDVTLVSRS   30 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHH-TTCEEEEEESH
T ss_pred             CEEECc-CHHHHHHHHHHHH-CCCceEEEEcc
Confidence            789997 9999999998877 78887665543

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12742 oxidoreductase; Provisional

Probab=89.88  E-value=2.2  Score=35.31  Aligned_cols=31  Identities=29%  Similarity=0.341  Sum_probs=25.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++...
T Consensus         7 k~vlItGasggIG~~~a~~l~~-~G~~v~~~~   37 (237)
T PRK12742          7 KKVLVLGGSRGIGAAIVRRFVT-DGANVRFTY   37 (237)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-CCCEEEEec
Confidence            5799999999999999999876 477876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	2e-17
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	4e-10
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	1e-09
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	3e-09
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* Length = 245

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 33/159 (20%)

Query: 36  IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT 95
           ++V + GA  ++G   V AV  A  + ++  +D    G+ + ++ D          ++  
Sbjct: 1   MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELD---AGDPLSLLTDGN--------TE-- 47

Query: 96  MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVSALSAF 151
                        VVIDFT    V  N++     G+ +VV    +    + + V +    
Sbjct: 48  -------------VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAE-RFQQVESWLV- 92

Query: 152 CDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVE 190
             K +   LIAP  +IG++L    A  A+  + + E++E
Sbjct: 93  -AKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIE 130

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* Length = 273

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 25/170 (14%)

Query: 32  PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEI 88
             +NI+V I GA   +GR  + A     G+++  A++   S  +G D G +        +
Sbjct: 2   HDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGV 60

Query: 89  PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLET 144
            V S L  V           V IDFT      +++      G   V+    +      + 
Sbjct: 61  TVQSSLDAVKDDFD------VFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEA-GKQA 113

Query: 145 VSALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVE 190
           +   +     A +  + A   S+G      LL++AA     +  ++EI+E
Sbjct: 114 IRDAA-----ADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYT-DIEIIE 157

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} Length = 272

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 26/168 (15%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
           S++K+ I GA   +GR  + AV  A    + GA+D   S  +G+D G      +   + +
Sbjct: 6   SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG--KQTGVAL 63

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVS 146
             D+  V            +IDFT       ++  A    ++ V+    +    Q   + 
Sbjct: 64  TDDIERVC------AEADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEP-QKAQLR 116

Query: 147 ALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVE 190
           A         +  + +  +S+G      LL+ AA   +  Y ++EI+E
Sbjct: 117 AAG-----EKIALVFSANMSVGVNVTMKLLEFAAKQFAQGY-DIEIIE 158

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} Length = 288

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 22/168 (13%), Positives = 65/168 (38%), Gaps = 25/168 (14%)

Query: 34  SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDMEQPLEIPV 90
            ++++ + GA   +GR  + A+ + + +E+   +    S  V +D  ++   +  L + +
Sbjct: 20  GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-FLGVRI 78

Query: 91  MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV----YVPHIQLETVS 146
             D      +         ++DF+           A    +  ++    +    +   ++
Sbjct: 79  TDDPESAFSNTE------GILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKT-EEAQIA 131

Query: 147 ALSAFCDKASMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVE 190
             +          + +  +S+G    + L+++AA +    + ++EI E
Sbjct: 132 DFA-----KYTTIVKSGNMSLGVNLLANLVKRAAKALDDDF-DIEIYE 173

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 8/43 (18%), Positives = 21/43 (48%), Gaps = 14/43 (32%)

Query: 173 QQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTL-VRSTTE 214
           ++ A+      K ++       A ++L +  ++P L +++T E
Sbjct: 18  EKQAL------KKLQ-------ASLKLYADDSAPALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	100.0
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	100.0
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	100.0
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	100.0
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	100.0
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	100.0
4had_A	350	Probable oxidoreductase protein; structural genomi	99.79
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	99.79
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	99.75
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	99.74
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.74
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	99.74
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	99.74
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	99.73
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	99.73
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	99.73
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.73
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	99.73
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	99.72
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	99.72
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	99.71
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	99.71
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	99.71
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	99.71
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	99.71
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	99.7
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	99.7
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	99.7
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	99.7
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	99.7
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	99.69
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	99.69
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	99.69
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	99.69
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	99.69
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	99.68
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.68
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	99.68
4h3v_A	390	Oxidoreductase domain protein; structural genomics	99.68
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	99.68
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	99.68
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	99.68
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	99.68
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	99.68
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	99.67
1ydw_A	362	AX110P-like protein; structural genomics, protein	99.67
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	99.67
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	99.66
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	99.66
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	99.66
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	99.66
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	99.65
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	99.64
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	99.63
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	99.63
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.62
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	99.62
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	99.62
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	99.61
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	99.6
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	99.59
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	99.56
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	99.52
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	99.49
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	99.48
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	99.4
3mwd_B	334	ATP-citrate synthase; ATP-grAsp, phosphohistidine,	99.4
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	99.39
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	99.28
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	99.25
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	99.24
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	99.13
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	99.11
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	99.05
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	99.02
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	99.02
2g0t_A	350	Conserved hypothetical protein; structural genomic	99.02
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	99.02
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	99.01
2obn_A	349	Hypothetical protein; structural genomics, joint c	98.92
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.91
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.91
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.89
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	98.89
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	98.88
3pff_A	829	ATP-citrate synthase; phosphohistidine, organic ac	98.84
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	98.83
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.81
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	98.81
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.76
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	98.74
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	98.74
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	98.73
1r0k_A	388	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	98.72
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	98.7
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	98.68
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	98.65
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	98.64
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	98.62
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.6
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	98.57
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	98.55
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	98.54
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	98.54
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.53
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.52
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	98.49
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.49
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.49
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	98.48
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	98.45
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.44
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.44
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.43
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	98.42
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.42
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	98.41
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	98.41
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	98.4
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	98.39
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	98.38
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	98.38
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	98.37
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.37
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.37
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.36
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	98.35
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	98.35
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.34
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.33
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.32
2csu_A	457	457AA long hypothetical protein; structural genomi	98.3
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.3
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.29
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	98.28
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.27
3a06_A	376	1-deoxy-D-xylulose 5-phosphate reductoisomerase; M	98.27
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.26
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.23
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.2
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.2
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.19
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.18
1gr0_A	367	Inositol-3-phosphate synthase; isomerase, oxidored	98.18
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.18
4ezb_A	317	Uncharacterized conserved protein; structural geno	98.13
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	98.13
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.11
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.09
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	98.09
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	98.06
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.04
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.03
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.02
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.94
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	97.93
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	97.92
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.89
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.89
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	97.88
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	97.88
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.87
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.87
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.86
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.84
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.82
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	97.81
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.81
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.78
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.78
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.76
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	97.75
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.73
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.73
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.73
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.72
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.7
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.7
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	97.69
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.69
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.67
2b4r_O	345	Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st	97.66
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.66
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.63
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.62
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	97.59
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	97.59
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.56
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.52
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.52
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.52
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.52
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.51
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.48
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.46
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.46
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.46
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.46
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.4
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.39
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	97.39
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.37
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.35
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	97.35
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.35
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.33
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.33
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	97.31
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.3
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.29
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.29
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.29
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.25
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	97.24
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.24
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.23
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	97.23
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.22
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.22
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	97.21
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.2
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.19
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.18
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	97.17
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	97.17
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	97.16
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.15
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.14
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.14
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.13
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.12
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.11
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.09
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.07
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.07
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.05
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.01
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.0
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.0
3dmy_A	480	Protein FDRA; predicted actyl-COA synthetase, nysg	96.97
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.97
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.97
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	96.93
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.92
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.9
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.89
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.87
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.86
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.85
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.83
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.83
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.83
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.82
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.82
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	96.8
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.8
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.8
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.78
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.78
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.78
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.81
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.73
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.72
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.72
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	96.72
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.72
3cin_A	394	MYO-inositol-1-phosphate synthase-related protein;	96.71
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	96.71
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	96.71
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.71
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.71
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.66
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.66
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.65
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.64
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.64
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.64
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	96.63
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.63
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.6
1vjp_A	394	MYO-inositol-1-phosphate synthase-related protein;	96.57
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.54
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.52
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.52
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.51
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	96.5
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	96.48
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.47
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	96.46
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.46
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.43
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.43
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.43
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.43
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.42
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.42
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.41
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.41
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	96.38
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	96.37
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	96.36
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.35
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.33
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.32
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	96.32
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.31
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.3
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	96.3
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.3
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.29
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	96.26
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.26
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.25
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	96.24
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.23
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.23
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	96.22
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	96.22
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.22
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.18
3hja_A	356	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n	96.18
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	96.16
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	96.13
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	96.12
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.11
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	96.1
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.1
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	96.09
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.09
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.08
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	96.08
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.08
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.08
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.08
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.06
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	96.04
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.04
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.04
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.04
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.96
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	95.94
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.93
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.92
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.91
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.89
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.88
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.88
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	95.84
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	95.83
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	95.79
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.79
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	95.78
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	95.77
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.76
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	95.75
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.73
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	95.72
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.69
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.68
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	95.67
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.67
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	95.67
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.66
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.64
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.62
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.61
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	95.59
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	95.59
4f6c_A	427	AUSA reductase domain protein; thioester reductase	95.59
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	95.57
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.57
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	95.55
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.54
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.53
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.52
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.51
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	95.5
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	95.46
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.46
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	95.45
1q0q_A	406	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	95.44
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.43
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.42
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	95.41
4f6l_B	508	AUSA reductase domain protein; thioester reductase	95.39
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.39
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.36
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.34
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	95.33
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.33
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	95.3
2y1e_A	398	1-deoxy-D-xylulose 5-phosphate reductoisomerase; o	95.29
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.27
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.26
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	95.24
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	95.19
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	95.17
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.17
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.16
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	95.09
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	95.08
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.04
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	95.04
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	95.01
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	94.99
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	94.98
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	94.96
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.9
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	94.9
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	94.87
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	94.86
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	94.84
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.82
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	94.8
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	94.8
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	94.76
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.74
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	94.72
3rih_A	293	Short chain dehydrogenase or reductase; structural	94.7
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.69
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	94.66
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	94.65
3au8_A	488	1-deoxy-D-xylulose 5-phosphate reductoisomerase; N	94.61
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	94.58
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	94.56
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	94.47
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	94.45
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	94.43
4e4y_A	244	Short chain dehydrogenase family protein; structur	94.41
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	94.4
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.4
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	94.39
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	94.34
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.28
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.27
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	94.25
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	94.22
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	94.22
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.2
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	94.19
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	94.18
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.18
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.16
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.13
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	94.12
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	94.06
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.0
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	93.95
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	93.93
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	93.9
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	93.89
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	93.88
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	93.88
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.87
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.87
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	93.86
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	93.82
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.81
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	93.78
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.76
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	93.75
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	93.75
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	93.69
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.69
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	93.63
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.62
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	93.58
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	93.57
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	93.44
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.39
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.37
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	93.33
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	93.33
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	93.3
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	93.3
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.23
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	93.23
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.2
4dqx_A	277	Probable oxidoreductase protein; structural genomi	93.18
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	93.17
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.14
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	93.12
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.11
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.1
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.07
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.06
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.04
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.02
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	93.01
2qk4_A	452	Trifunctional purine biosynthetic protein adenosi;	92.99
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	92.95
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	92.93
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	92.9
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	92.88
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.86
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	92.84
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	92.78
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	92.75
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	92.75

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=100.00  E-value=1.9e-49  Score=350.59  Aligned_cols=167  Identities=14%  Similarity=0.200  Sum_probs=153.1

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      ..|+||+|+||+|+||+.+++.+.+.|+++|+|++|+.   ..|+|+++++|.+ +.|+++++|+++++.      ++||
T Consensus        19 ~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~-~~gv~v~~dl~~ll~------~aDV   91 (288)
T 3ijp_A           19 PGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD-FLGVRITDDPESAFS------NTEG   91 (288)
T ss_dssp             --CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS-CCSCBCBSCHHHHTT------SCSE
T ss_pred             cCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC-cCCceeeCCHHHHhc------CCCE
Confidence            35689999998899999999999999999999999963   4699999999886 789999999999986      7999


Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCC---CCCe
Q 027650          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH---YKNV  186 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~---~~di  186 (220)
                      |||||+|+.+.+++..|+++|+|+|+|||||++++.++|+++|++  ++++++||||+|+|||+++++.++++   .||+
T Consensus        92 vIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~--~~~~~a~N~SiGv~ll~~l~~~aa~~l~~~~di  169 (288)
T 3ijp_A           92 ILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAKY--TTIVKSGNMSLGVNLLANLVKRAAKALDDDFDI  169 (288)
T ss_dssp             EEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHTT--SEEEECSCCCHHHHHHHHHHHHHHHHSCTTSEE
T ss_pred             EEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhCc--CCEEEECCCcHHHHHHHHHHHHHHHhcCCCCCE
Confidence            999999999999999999999999999999999999999999998  99999999999999998887666553   4799


Q ss_pred             EEEeccCCCCCCCCchhhHHHH
Q 027650          187 EIVESRPNARMQLKSPTTSPTL  208 (220)
Q Consensus       187 EIiE~HH~~K~DaPSGTA~~~~  208 (220)
                      ||+|+||++|+|||||||+.+.
T Consensus       170 eIiE~HH~~K~DaPSGTA~~la  191 (288)
T 3ijp_A          170 EIYEMHHANKVDSPSGTALLLG  191 (288)
T ss_dssp             EEEEEECTTCCCSSCHHHHHHH
T ss_pred             EEEEccCCCCCCCCCHHHHHHH
Confidence            9999999999999999999544

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=100.00  E-value=5.2e-48  Score=339.13  Aligned_cols=164  Identities=21%  Similarity=0.270  Sum_probs=151.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ||||+|+||+|+||+.+++.+.++|+++|++++|+.   ..|+|++++.|.. . ++++++|+++++.      ++||||
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~-~-gv~v~~dl~~ll~------~~DVVI   78 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQ-T-GVALTDDIERVCA------EADYLI   78 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCC-C-SCBCBCCHHHHHH------HCSEEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCC-C-CceecCCHHHHhc------CCCEEE
Confidence            699999998999999999999999999999999963   4689999999875 3 9999999999997      699999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCC---CCCeEE
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH---YKNVEI  188 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~---~~diEI  188 (220)
                      |||+|+.+.+++..|+++|+++|+|||||++++.++|+++|++  ++++++||||+|+|||+++++.++++   .||+||
T Consensus        79 DfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa~~--~~vv~a~N~s~Gv~l~~~~~~~aa~~l~~~~diei  156 (272)
T 4f3y_A           79 DFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAGEK--IALVFSANMSVGVNVTMKLLEFAAKQFAQGYDIEI  156 (272)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHTTT--SEEEECSCCCHHHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             EcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcc--CCEEEECCCCHHHHHHHHHHHHHHHhcCcCCCEEE
Confidence            9999999999999999999999999999999999999999998  99999999999999998887776653   479999


Q ss_pred             EeccCCCCCCCCchhhHHHH
Q 027650          189 VESRPNARMQLKSPTTSPTL  208 (220)
Q Consensus       189 iE~HH~~K~DaPSGTA~~~~  208 (220)
                      +|+||++|+|||||||+.+.
T Consensus       157 ~E~HH~~K~DaPSGTA~~la  176 (272)
T 4f3y_A          157 IEAHHRHKVDAPSGTALMMG  176 (272)
T ss_dssp             EEEECTTCCSSSCHHHHHHH
T ss_pred             EEecCCCCCCCCCHHHHHHH
Confidence            99999999999999999543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=100.00  E-value=2.4e-45  Score=317.51  Aligned_cols=153  Identities=16%  Similarity=0.241  Sum_probs=138.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ||||+|+|| |+||+.+++.+.+.++ +|++++|+...           ...|+++++|+++++       ++||+||||
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~~~-----------~~~gv~v~~dl~~l~-------~~DVvIDft   62 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENTPK-----------ATTPYQQYQHIADVK-------GADVAIDFS   62 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSSCC-------------CCSCBCSCTTTCT-------TCSEEEECS
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecCcc-----------ccCCCceeCCHHHHh-------CCCEEEEeC
Confidence            799999999 9999999999999999 99999997531           135789999998875       589999999


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCC--CCeEEEecc
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVESR  192 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~--~diEIiE~H  192 (220)
                      .|+.+.++++  +++|+++|+|||||++++.++|+++|++  +|++++||||+|+|||+++++.+++++  ||+||+|+|
T Consensus        63 ~p~a~~~~~~--l~~g~~vVigTTG~s~e~~~~l~~aa~~--~~v~~a~N~S~Gv~l~~~~~~~aa~~l~~~dieI~E~H  138 (243)
T 3qy9_A           63 NPNLLFPLLD--EDFHLPLVVATTGEKEKLLNKLDELSQN--MPVFFSANMSYGVHALTKILAAAVPLLDDFDIELTEAH  138 (243)
T ss_dssp             CHHHHHHHHT--SCCCCCEEECCCSSHHHHHHHHHHHTTT--SEEEECSSCCHHHHHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred             ChHHHHHHHH--HhcCCceEeCCCCCCHHHHHHHHHHHhc--CCEEEECCccHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            9999999997  9999999999999999999999999998  999999999999999999988887765  899999999


Q ss_pred             CCCCCCCCchhhHHHHHHhh
Q 027650          193 PNARMQLKSPTTSPTLVRST  212 (220)
Q Consensus       193 H~~K~DaPSGTA~~~~~~~~  212 (220)
                      |++|+|||||||+. |.+..
T Consensus       139 H~~K~DaPSGTA~~-la~~i  157 (243)
T 3qy9_A          139 HNKKVDAPSGTLEK-LYDVI  157 (243)
T ss_dssp             CTTCCSSSCHHHHH-HHHHH
T ss_pred             CCCCCCCCCHHHHH-HHHHH
Confidence            99999999999994 44444

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=100.00  E-value=1.2e-44  Score=317.53  Aligned_cols=169  Identities=21%  Similarity=0.313  Sum_probs=150.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      .+|||+|+||+|+||+.+++.+.+.++++|++++|++.   .|++++++.|.. ..++++++|+++++.      ++|||
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~-~~~v~~~~dl~~~l~------~~DvV   76 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVKD------DFDVF   76 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTTT------SCSEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCC-cCCceecCCHHHHhc------CCCEE
Confidence            35899999999999999999999999999999999643   378888888775 678899999999885      79999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCC---CCCeE
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH---YKNVE  187 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~---~~diE  187 (220)
                      ||||+|+.+.+++..|+++|+|+|+|||||++++.++|.+++++  ++++++||||+|+|++.++++.++++   .||||
T Consensus        77 IDft~p~~~~~~~~~a~~~G~~vVigTtG~~~e~~~~L~~~a~~--~~vv~a~N~siGvn~~~~l~~~aa~~~~~~~die  154 (273)
T 1dih_A           77 IDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD--IAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIE  154 (273)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTT--SCEEECSCCCHHHHHHHHHHHHHHHHHTTTSEEE
T ss_pred             EEcCChHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhcCC--CCEEEEecCcHHHHHHHHHHHHHHHhcCCCCCEE
Confidence            99999999999999999999999999999999999999999987  89999999999999987776666543   48999


Q ss_pred             EEeccCCCCCCCCchhhHHHHHHhh
Q 027650          188 IVESRPNARMQLKSPTTSPTLVRST  212 (220)
Q Consensus       188 IiE~HH~~K~DaPSGTA~~~~~~~~  212 (220)
                      |+|+||++|+|+|||||+. +.+..
T Consensus       155 iiE~Hh~~K~DaPSGTA~~-~ae~i  178 (273)
T 1dih_A          155 IIEAHHRHKVDAPSGTALA-MGEAI  178 (273)
T ss_dssp             EEEEECTTCCSSSCHHHHH-HHHHH
T ss_pred             EEEeecCCCCCCCCHHHHH-HHHHH
Confidence            9999999999999999995 44433

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=100.00  E-value=5.1e-43  Score=303.24  Aligned_cols=147  Identities=24%  Similarity=0.355  Sum_probs=135.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+|+||+|+||+.+++.+.+.|+++|++++|+.                     +|+++++.     .++|||||||+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------------~dl~~~~~-----~~~DvvIDfT~   54 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------------DPLSLLTD-----GNTEVVIDFTH   54 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------------CCTHHHHH-----TTCCEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------------CCHHHHhc-----cCCcEEEEccC
Confidence            59999999999999999999988999999999862                     24455554     27999999999


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhc-CceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEEeccCC
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA-SMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPN  194 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~-~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIiE~HH~  194 (220)
                      |+.+.+++..|+++|+++|+|||||++++.++|+++|+++ +++++++||||+|+|+++++++.++++++||||+|+||+
T Consensus        55 p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~~aa~~~~dieIiE~HH~  134 (245)
T 1p9l_A           55 PDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHP  134 (245)
T ss_dssp             TTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHHHHGGGCSEEEEEEEECT
T ss_pred             hHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHHHHHhhcCCEEEEECccc
Confidence            9999999999999999999999999999999999999976 899999999999999999999999988889999999999


Q ss_pred             CCCCCCchhhHHHH
Q 027650          195 ARMQLKSPTTSPTL  208 (220)
Q Consensus       195 ~K~DaPSGTA~~~~  208 (220)
                      +|+|||||||+.+.
T Consensus       135 ~K~DaPSGTA~~la  148 (245)
T 1p9l_A          135 HKADAPSGTAARTA  148 (245)
T ss_dssp             TCCSSSCHHHHHHH
T ss_pred             CCCCCCCHHHHHHH
Confidence            99999999999543

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=100.00  E-value=5.3e-43  Score=299.24  Aligned_cols=145  Identities=21%  Similarity=0.226  Sum_probs=127.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -||-+|+|++||||+.+++.+ +.++++|++++|+..   +                ++    +.      ++||+||||
T Consensus        12 ~~~~~v~Ga~GrMG~~i~~~~-~~~~~elv~~id~~~---~----------------~~----l~------~~DVvIDFT   61 (228)
T 1vm6_A           12 HMKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVNG---V----------------EE----LD------SPDVVIDFS   61 (228)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETTE---E----------------EE----CS------CCSEEEECS
T ss_pred             cceeEEEEecCHHHHHHHHHH-hCCCCEEEEEEcCCC---c----------------cc----cc------CCCEEEECC
Confidence            378999999999999998864 778999999998631   0                01    11      689999999


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCC--CCCeEEEecc
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH--YKNVEIVESR  192 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~--~~diEIiE~H  192 (220)
                      .|+.+.++++.|+++|+|+|+|||||++++.+.|++++++  +|++++||||+|+|||+++++.++++  .|||||+|+|
T Consensus        62 ~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~--~~vv~apNfSlGvnll~~l~~~aA~~l~~ydiEIiE~H  139 (228)
T 1vm6_A           62 SPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKE--VPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIVETH  139 (228)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTT--SEEEECSCCCHHHHHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHHhh--CCEEEeccccHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            9999999999999999999999999999999999999987  99999999999999998887777664  4799999999


Q ss_pred             CCCCCCCCchhhHHHHHHhh
Q 027650          193 PNARMQLKSPTTSPTLVRST  212 (220)
Q Consensus       193 H~~K~DaPSGTA~~~~~~~~  212 (220)
                      |++|+|||||||+ +|.+..
T Consensus       140 H~~K~DAPSGTAl-~lae~i  158 (228)
T 1vm6_A          140 HRFKKDAPSGTAI-LLESAL  158 (228)
T ss_dssp             CTTCCCSSCHHHH-HHHHHT
T ss_pred             CCCCCCCCCHHHH-HHHHhc
Confidence            9999999999999 444443

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=99.79  E-value=9e-19  Score=155.58  Aligned_cols=149  Identities=17%  Similarity=0.086  Sum_probs=120.4

Q ss_pred             CCCCceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccE
Q 027650           32 PQSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DV  109 (220)
                      .++||||||+|+ |+||+. ++..+...|+++|+|++|++.  ..+.+++   +.+|++ +|+|++++++.    .++|+
T Consensus        20 ~~~mirigiIG~-G~ig~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a---~~~g~~~~y~d~~ell~~----~~iDa   89 (350)
T 4had_A           20 FQSMLRFGIIST-AKIGRDNVVPAIQDAENCVVTAIASRDL--TRAREMA---DRFSVPHAFGSYEEMLAS----DVIDA   89 (350)
T ss_dssp             --CCEEEEEESC-CHHHHHTHHHHHHHCSSEEEEEEECSSH--HHHHHHH---HHHTCSEEESSHHHHHHC----SSCSE
T ss_pred             ccCccEEEEEcC-hHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCeeeCCHHHHhcC----CCCCE
Confidence            367899999997 999986 578888999999999999752  2233333   245664 79999999985    57999


Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCe
Q 027650          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNV  186 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~di  186 (220)
                      |+.+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.+.-|  |...+..++++.+  .+.+-++
T Consensus        90 V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~--~G~iG~i  167 (350)
T 4had_A           90 VYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLID--EGAIGSL  167 (350)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHH--TTTTSSE
T ss_pred             EEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhh--cCCCCcc
Confidence            99999999999999999999999999999 89999999999999999999998876  7787777777663  2234466


Q ss_pred             EEEecc
Q 027650          187 EIVESR  192 (220)
Q Consensus       187 EIiE~H  192 (220)
                      ..++.+
T Consensus       168 ~~i~~~  173 (350)
T 4had_A          168 RHVQGA  173 (350)
T ss_dssp             EEEEEE
T ss_pred             eeeeEE
Confidence            655543

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=99.79  E-value=9.1e-20  Score=162.08  Aligned_cols=155  Identities=14%  Similarity=0.075  Sum_probs=124.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +++||+|+|+ |+||+.+++.+.+.++++|++++|++... .++        .++++++|+++++.      ++|+||++
T Consensus         2 ~~irV~IiG~-G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~--------~gv~~~~d~~~ll~------~~DvViia   65 (320)
T 1f06_A            2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTK--------TPVFDVADVDKHAD------DVDVLFLC   65 (320)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSS--------SCEEEGGGGGGTTT------TCSEEEEC
T ss_pred             CCCEEEEEee-cHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhc--------CCCceeCCHHHHhc------CCCEEEEc
Confidence            3689999997 99999999999999999999999975321 111        46778889998873      79999999


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHH-HHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhc-CCC----CCe
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETV-SALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS-FHY----KNV  186 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~-~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~-~~~----~di  186 (220)
                      |+|..+.+++..++++|+++|++|| +.+.++. ++|.+++++++.-.++..||+.|+..+.++..... ...    +..
T Consensus        66 tp~~~h~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~~~~p~~~~l~~~l~~~~~~~g~~~~~~~  145 (320)
T 1f06_A           66 MGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGWDPGMFSINRVYAAAVLAEHQQHTFWG  145 (320)
T ss_dssp             SCTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSBTTBHHHHHHHHHHHHCSSEEEEEEEC
T ss_pred             CCcHHHHHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCCEEEEecCChHHHHHHHHHHhhccccccceecccC
Confidence            9999999999999999999999999 5777777 89999999877555555699999987776654322 111    223


Q ss_pred             EEEeccCCCCCCCCchhh
Q 027650          187 EIVESRPNARMQLKSPTT  204 (220)
Q Consensus       187 EIiE~HH~~K~DaPSGTA  204 (220)
                      +..|.||..+.+.++|++
T Consensus       146 ~~~~~~~~~~~~~~~gi~  163 (320)
T 1f06_A          146 PGLSQGHSDALRRIPGVQ  163 (320)
T ss_dssp             SEECHHHHHHHHTSTTCS
T ss_pred             CCcccccccchhhcCchh
Confidence            678899999999999874

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=99.75  E-value=2.3e-17  Score=147.55  Aligned_cols=148  Identities=11%  Similarity=-0.013  Sum_probs=121.6

Q ss_pred             CCceEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .++||+|+|+ |+||+ .+++.+.+.++++|++++|++.  ..+..+.   +.+|++.++|++++++.    .++|+|+.
T Consensus        26 ~~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~~ll~~----~~~D~V~i   95 (350)
T 3rc1_A           26 NPIRVGVIGC-ADIAWRRALPALEAEPLTEVTAIASRRW--DRAKRFT---ERFGGEPVEGYPALLER----DDVDAVYV   95 (350)
T ss_dssp             CCEEEEEESC-CHHHHHTHHHHHHHCTTEEEEEEEESSH--HHHHHHH---HHHCSEEEESHHHHHTC----TTCSEEEE
T ss_pred             CceEEEEEcC-cHHHHHHHHHHHHhCCCeEEEEEEcCCH--HHHHHHH---HHcCCCCcCCHHHHhcC----CCCCEEEE
Confidence            3589999997 99998 7999999999999999999742  2233333   24578889999999974    57999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      +|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.+.-|  |...+..++++.+  .+..-++..+
T Consensus        96 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~--~G~iG~i~~v  173 (350)
T 3rc1_A           96 PLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLD--EGVIGEIRSF  173 (350)
T ss_dssp             CCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHH--TTTTCSEEEE
T ss_pred             CCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHh--cCCCCCeEEE
Confidence            99999999999999999999999999 89999999999999999999998765  7888877777664  2234566666


Q ss_pred             eccC
Q 027650          190 ESRP  193 (220)
Q Consensus       190 E~HH  193 (220)
                      +.+.
T Consensus       174 ~~~~  177 (350)
T 3rc1_A          174 AASF  177 (350)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6553

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=99.74  E-value=4.3e-17  Score=145.21  Aligned_cols=146  Identities=9%  Similarity=0.002  Sum_probs=116.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHh-------cCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTK-------ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKA  106 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~-------~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~  106 (220)
                      ++||||+|+ |+||+.+++.+..       .|+++|++++|++.  ..+.+++   +.+|++ +|+|+++++++    .+
T Consensus        25 kirvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a---~~~g~~~~y~d~~ell~~----~~   94 (393)
T 4fb5_A           25 PLGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLVHLAEANA--GLAEARA---GEFGFEKATADWRALIAD----PE   94 (393)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC----TTHHHHH---HHHTCSEEESCHHHHHHC----TT
T ss_pred             CccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCH--HHHHHHH---HHhCCCeecCCHHHHhcC----CC
Confidence            389999997 9999999887654       47889999999753  2233333   245654 79999999985    68


Q ss_pred             ccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCC
Q 027650          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHY  183 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~  183 (220)
                      +|+|+.+|++..+.+.+..|+++|+||+|++| +.+.+|.++|.++|+++|+.+.+.-|  |...+.-++++.+.  +..
T Consensus        95 iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i~~--G~i  172 (393)
T 4fb5_A           95 VDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGD--GVI  172 (393)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHHHT--TTT
T ss_pred             CcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHHHc--CCC
Confidence            99999999999999999999999999999999 89999999999999999999998877  67777666666532  344


Q ss_pred             CCeEEEecc
Q 027650          184 KNVEIVESR  192 (220)
Q Consensus       184 ~diEIiE~H  192 (220)
                      -++..++.+
T Consensus       173 G~i~~v~~~  181 (393)
T 4fb5_A          173 GRVNHVRVE  181 (393)
T ss_dssp             CSEEEEEEE
T ss_pred             ccccceeee
Confidence            566655543

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=99.74  E-value=5.5e-17  Score=144.83  Aligned_cols=149  Identities=20%  Similarity=0.157  Sum_probs=123.1

Q ss_pred             CCceEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +|+||+|+|+ |+||+ .+++.+...|+++|++++|++ ..+...+-.+   ..++++|+|++++++.    .++|+|+.
T Consensus         1 M~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~---~~~~~~~~~~~~ll~~----~~~D~V~i   71 (349)
T 3i23_A            1 MTVKMGFIGF-GKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFK---EKGVNFTADLNELLTD----PEIELITI   71 (349)
T ss_dssp             CCEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHH---TTTCEEESCTHHHHSC----TTCCEEEE
T ss_pred             CeeEEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhC---CCCCeEECCHHHHhcC----CCCCEEEE
Confidence            4789999997 99998 789989889999999999986 3333333222   2467889999999984    57999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      +|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.+..|  |...+.-++++.+.  +..-++.-+
T Consensus        72 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~  149 (349)
T 3i23_A           72 CTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVVEQ--GFLGEINEV  149 (349)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHH--TTTCSEEEE
T ss_pred             eCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhc--CCCCCEEEE
Confidence            99999999999999999999999999 89999999999999999999999877  67777667666632  345577777


Q ss_pred             eccC
Q 027650          190 ESRP  193 (220)
Q Consensus       190 E~HH  193 (220)
                      +.+.
T Consensus       150 ~~~~  153 (349)
T 3i23_A          150 ETHI  153 (349)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            7763

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=99.74  E-value=8.3e-17  Score=142.92  Aligned_cols=152  Identities=13%  Similarity=0.134  Sum_probs=124.5

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .+|+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..+.   +.+|+++++|++++++.    .++|+|+.
T Consensus         2 ~~~~rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~~~l~~----~~~D~V~i   71 (344)
T 3euw_A            2 SLTLRIALFGA-GRIGHVHAANIAANPDLELVVIADPFI--EGAQRLA---EANGAEAVASPDEVFAR----DDIDGIVI   71 (344)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HTTTCEEESSHHHHTTC----SCCCEEEE
T ss_pred             CCceEEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHcCCceeCCHHHHhcC----CCCCEEEE
Confidence            35799999997 999999999999999999999999742  2233333   24577889999999974    57999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.+.+..|  |...+..++++.+.  +..-++..+
T Consensus        72 ~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~v  149 (344)
T 3euw_A           72 GSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVAN--QEIGNLEQL  149 (344)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHT--TTTSSEEEE
T ss_pred             eCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhc--CCCCceEEE
Confidence            99999999999999999999999999 89999999999999999999998866  67777667766632  345577777


Q ss_pred             eccCCCC
Q 027650          190 ESRPNAR  196 (220)
Q Consensus       190 E~HH~~K  196 (220)
                      +.+.+..
T Consensus       150 ~~~~~~~  156 (344)
T 3euw_A          150 VIISRDP  156 (344)
T ss_dssp             EEEEECS
T ss_pred             EEEecCC
Confidence            6665443

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=99.74  E-value=1.2e-16  Score=142.53  Aligned_cols=148  Identities=22%  Similarity=0.223  Sum_probs=121.9

Q ss_pred             CCCCCceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650           31 PPQSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      .+..++||+|+|+ |+||+. +++.+...|+++|++++|++.  ..+.+     ...++++|+|++++++.    .++|+
T Consensus         3 ~M~~~~rvgiiG~-G~~g~~~~~~~~~~~~~~~l~av~d~~~--~~~~~-----~~~~~~~~~~~~~ll~~----~~vD~   70 (352)
T 3kux_A            3 AMADKIKVGLLGY-GYASKTFHAPLIMGTPGLELAGVSSSDA--SKVHA-----DWPAIPVVSDPQMLFND----PSIDL   70 (352)
T ss_dssp             TTTCCEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCH--HHHHT-----TCSSCCEESCHHHHHHC----SSCCE
T ss_pred             cccCCceEEEECC-CHHHHHHHHHHHhhCCCcEEEEEECCCH--HHHHh-----hCCCCceECCHHHHhcC----CCCCE
Confidence            3556799999997 999997 999999999999999999742  11111     12367889999999984    57999


Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCe
Q 027650          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNV  186 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~di  186 (220)
                      |+.+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.+..|  |...+.-++++.+.  +..-++
T Consensus        71 V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i  148 (352)
T 3kux_A           71 IVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLAE--GSLGNV  148 (352)
T ss_dssp             EEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHH--TTTCSE
T ss_pred             EEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEeecccCHHHHHHHHHHhc--CCCCce
Confidence            99999999999999999999999999999 89999999999999999999998877  67777667766532  345567


Q ss_pred             EEEecc
Q 027650          187 EIVESR  192 (220)
Q Consensus       187 EIiE~H  192 (220)
                      .-++.+
T Consensus       149 ~~~~~~  154 (352)
T 3kux_A          149 VYFESH  154 (352)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            766665

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=99.73  E-value=8.4e-17  Score=142.18  Aligned_cols=149  Identities=13%  Similarity=0.135  Sum_probs=122.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +|+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..+.   +.++++ ++|++++++.    .++|+|+.+
T Consensus         2 m~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~-~~~~~~~l~~----~~~D~V~i~   70 (331)
T 4hkt_A            2 MTVRFGLLGA-GRIGKVHAKAVSGNADARLVAVADAFP--AAAEAIA---GAYGCE-VRTIDAIEAA----ADIDAVVIC   70 (331)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHH---HHTTCE-ECCHHHHHHC----TTCCEEEEC
T ss_pred             CceEEEEECC-CHHHHHHHHHHhhCCCcEEEEEECCCH--HHHHHHH---HHhCCC-cCCHHHHhcC----CCCCEEEEe
Confidence            5789999997 999999999999999999999999742  2233333   245778 9999999974    579999999


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEEe
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVE  190 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIiE  190 (220)
                      |++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.+++..|  |...+..++++.+  .+..-++..++
T Consensus        71 tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~--~g~iG~i~~~~  148 (331)
T 4hkt_A           71 TPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAID--DGRIGEVEMVT  148 (331)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHH--TTTTCSEEEEE
T ss_pred             CCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHH--cCCCCceEEEE
Confidence            9999999999999999999999999 89999999999999999999998876  7777766776663  23455777666


Q ss_pred             ccCCC
Q 027650          191 SRPNA  195 (220)
Q Consensus       191 ~HH~~  195 (220)
                      .+.+.
T Consensus       149 ~~~~~  153 (331)
T 4hkt_A          149 ITSRD  153 (331)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            65543

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=99.73  E-value=5.2e-17  Score=144.50  Aligned_cols=128  Identities=15%  Similarity=0.156  Sum_probs=111.0

Q ss_pred             CCceEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .++||+|+|+ |+||+ .+++.+.+.|+++|++++|++.            +..|+++|+|++++++.   ..++|+|+.
T Consensus        24 ~~~rvgiiG~-G~ig~~~~~~~l~~~~~~~lvav~d~~~------------~~~g~~~~~~~~~ll~~---~~~vD~V~i   87 (330)
T 4ew6_A           24 SPINLAIVGV-GKIVRDQHLPSIAKNANFKLVATASRHG------------TVEGVNSYTTIEAMLDA---EPSIDAVSL   87 (330)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHHCTTEEEEEEECSSC------------CCTTSEEESSHHHHHHH---CTTCCEEEE
T ss_pred             CCceEEEEec-CHHHHHHHHHHHHhCCCeEEEEEEeCCh------------hhcCCCccCCHHHHHhC---CCCCCEEEE
Confidence            3589999997 99999 7999999999999999999752            13477889999999972   136999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHH
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAI  177 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~  177 (220)
                      +|++..+.+.+..|+++|+||+++|| +.+.++.++|.++|+++|+.++++.|  |...+..++++.+
T Consensus        88 ~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~  155 (330)
T 4ew6_A           88 CMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASWHSRYAPAVEAAKAFLA  155 (330)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSTTHHHHHHHHH
T ss_pred             eCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEehhhccHHHHHHHHHHh
Confidence            99999999999999999999999999 89999999999999999999998876  6666666666653

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=99.73  E-value=5.6e-17  Score=145.45  Aligned_cols=150  Identities=17%  Similarity=0.085  Sum_probs=121.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      +++||+|+|+ |+||+.+++.+. ..++++|++++|++.  ..+.++..   .+|  ++.|+|++++++.    .++|+|
T Consensus        22 ~~~rvgiIG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a~---~~g~~~~~~~~~~~ll~~----~~~D~V   91 (357)
T 3ec7_A           22 MTLKAGIVGI-GMIGSDHLRRLANTVSGVEVVAVCDIVA--GRAQAALD---KYAIEAKDYNDYHDLIND----KDVEVV   91 (357)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTCTTEEEEEEECSST--THHHHHHH---HHTCCCEEESSHHHHHHC----TTCCEE
T ss_pred             CeeeEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEeCCH--HHHHHHHH---HhCCCCeeeCCHHHHhcC----CCCCEE
Confidence            4589999997 999999999998 789999999999753  22333331   334  6789999999984    579999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceE-EEcCC--CcHHHHHHHHHHHHhcCCCCCe
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGC-LIAPT--LSIGSILLQQAAISASFHYKNV  186 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~v-viapN--fS~Gv~ll~~~a~~~~~~~~di  186 (220)
                      +.+|++..+.+.+..|+++|+||++++| +.+.++.++|.++|+++|+.+ .+.-|  |...+..++++.+.  +..-++
T Consensus        92 ~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i  169 (357)
T 3ec7_A           92 IITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKNIIDS--GEIGQP  169 (357)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHHHHHHHHHHH--TTTCSE
T ss_pred             EEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHHHHHHHHHhc--CCCCCe
Confidence            9999999999999999999999999999 899999999999999999877 55554  78888777777643  345577


Q ss_pred             EEEeccCCC
Q 027650          187 EIVESRPNA  195 (220)
Q Consensus       187 EIiE~HH~~  195 (220)
                      ..+...++.
T Consensus       170 ~~v~~~~~~  178 (357)
T 3ec7_A          170 LMVHGRHYN  178 (357)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            766665543

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=99.73  E-value=1.8e-16  Score=140.25  Aligned_cols=147  Identities=16%  Similarity=0.142  Sum_probs=119.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .|+||+|+|+ |+||+.+++.+...++++|++++|++.  ..+..+.   +.++++ +|+|++++++.    .++|+|+.
T Consensus         4 ~~~rigiiG~-G~ig~~~~~~l~~~~~~~~~av~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~~D~V~i   73 (329)
T 3evn_A            4 SKVRYGVVST-AKVAPRFIEGVRLAGNGEVVAVSSRTL--ESAQAFA---NKYHLPKAYDKLEDMLAD----ESIDVIYV   73 (329)
T ss_dssp             -CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEEECSCS--STTCC------CCCCSCEESCHHHHHTC----TTCCEEEE
T ss_pred             CceEEEEEec-hHHHHHHHHHHHhCCCcEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            4689999997 999999999999899999999999743  1122222   255775 79999999974    57999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      +|++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++|+.++++.|  |...+..++++.+  .+..-++..+
T Consensus        74 ~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~--~g~iG~i~~v  151 (329)
T 3evn_A           74 ATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLA--SGEIGEVISI  151 (329)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHH--TTTTCSEEEE
T ss_pred             CCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHh--CCCCCCeEEE
Confidence            99999999999999999999999999 89999999999999999999998876  6888877777663  2234566655


Q ss_pred             ecc
Q 027650          190 ESR  192 (220)
Q Consensus       190 E~H  192 (220)
                      +..
T Consensus       152 ~~~  154 (329)
T 3evn_A          152 SST  154 (329)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=99.73  E-value=2.3e-17  Score=149.96  Aligned_cols=148  Identities=13%  Similarity=0.080  Sum_probs=117.5

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhc--------CCcEEEEEEecCCCCcchhhhhcCCCCCCc-cccCCHHHHHhccc
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSIS  102 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~--------~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v~~dl~~~l~~~~  102 (220)
                      ++.+|||||+|+ |+||+.+++.+.+.        ++++|++++|++.  ..+.+++   +.+++ ++|+|+++++++  
T Consensus        23 Ms~klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~--~~a~~~a---~~~~~~~~y~d~~~ll~~--   94 (412)
T 4gqa_A           23 MSARLNIGLIGS-GFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQ--AMAERHA---AKLGAEKAYGDWRELVND--   94 (412)
T ss_dssp             --CEEEEEEECC-SHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSH--HHHHHHH---HHHTCSEEESSHHHHHHC--
T ss_pred             ccccceEEEEcC-cHHHHHHHHHHHhccccccccCCCeEEEEEEcCCH--HHHHHHH---HHcCCCeEECCHHHHhcC--
Confidence            567799999997 99999999988764        4789999999742  2223333   23455 479999999985  


Q ss_pred             cCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHh
Q 027650          103 QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISA  179 (220)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~  179 (220)
                        .++|+|+.+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.+.-|  |...+..++++.+. 
T Consensus        95 --~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~-  171 (412)
T 4gqa_A           95 --PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFNNIKTPAALLAKQIIAR-  171 (412)
T ss_dssp             --TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEECGGGTSHHHHHHHHHHHH-
T ss_pred             --CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeeeccceecCHHHHHHHHHHhc-
Confidence              6899999999999999999999999999999999 89999999999999999999998877  77777667766632 


Q ss_pred             cCCCCCeEEEec
Q 027650          180 SFHYKNVEIVES  191 (220)
Q Consensus       180 ~~~~~diEIiE~  191 (220)
                       +..-++.-++.
T Consensus       172 -G~iG~i~~~~~  182 (412)
T 4gqa_A          172 -GDIGEPVRFRG  182 (412)
T ss_dssp             -TTTCSEEEEEE
T ss_pred             -CCcCCeEEEEE
Confidence             23345554443

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=99.72  E-value=1e-16  Score=143.00  Aligned_cols=146  Identities=11%  Similarity=0.079  Sum_probs=120.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +++||+|+|+ |+||+.+++.+...|+++|++++|++.  ..+..+.   +.+|++.|+|++++++.    .++|+|+.+
T Consensus         4 ~~~~vgiiG~-G~~g~~~~~~l~~~~~~~lvav~d~~~--~~~~~~~---~~~g~~~~~~~~~~l~~----~~~D~V~i~   73 (354)
T 3db2_A            4 NPVGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTE--DKREKFG---KRYNCAGDATMEALLAR----EDVEMVIIT   73 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEECSSH--HHHHHHH---HHHTCCCCSSHHHHHHC----SSCCEEEEC
T ss_pred             CcceEEEEcc-CHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHcCCCCcCCHHHHhcC----CCCCEEEEe
Confidence            4689999997 999999999999999999999999742  2223333   14567789999999964    479999999


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEEe
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVE  190 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIiE  190 (220)
                      |++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.+.+..|  |...+..++++.+  .+..-++..++
T Consensus        74 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~--~g~iG~i~~v~  151 (354)
T 3db2_A           74 VPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMID--TKEIGEVSSIE  151 (354)
T ss_dssp             SCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHH--TTTTCCEEEEE
T ss_pred             CChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHh--cCCCCCeEEEE
Confidence            9999999999999999999999999 89999999999999999999998876  7777776776663  23345666555


Q ss_pred             c
Q 027650          191 S  191 (220)
Q Consensus       191 ~  191 (220)
                      .
T Consensus       152 ~  152 (354)
T 3db2_A          152 A  152 (354)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=99.72  E-value=1.3e-16  Score=141.79  Aligned_cols=150  Identities=11%  Similarity=0.072  Sum_probs=121.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +|+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+.++.   +.++++ +|+|++++++.    .++|+|+.
T Consensus         1 M~~rvgiIG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~~----~~~D~V~i   70 (344)
T 3ezy_A            1 MSLRIGVIGL-GRIGTIHAENLKMIDDAILYAISDVRE--DRLREMK---EKLGVEKAYKDPHELIED----PNVDAVLV   70 (344)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHGGGSTTEEEEEEECSCH--HHHHHHH---HHHTCSEEESSHHHHHHC----TTCCEEEE
T ss_pred             CeeEEEEEcC-CHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHH---HHhCCCceeCCHHHHhcC----CCCCEEEE
Confidence            4689999997 999999999999999999999999742  2222232   134554 79999999974    57999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.+.+.-|  |...+..++++.+  .+..-++..+
T Consensus        71 ~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~--~G~iG~i~~~  148 (344)
T 3ezy_A           71 CSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAVE--NGTIGKPHVL  148 (344)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHH--TTTTSSEEEE
T ss_pred             cCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHH--cCCCCCeEEE
Confidence            99999999999999999999999999 89999999999999999999998876  6777766776663  2345577777


Q ss_pred             eccCCC
Q 027650          190 ESRPNA  195 (220)
Q Consensus       190 E~HH~~  195 (220)
                      +.+.+.
T Consensus       149 ~~~~~~  154 (344)
T 3ezy_A          149 RITSRD  154 (344)
T ss_dssp             EEEEEC
T ss_pred             EEEeeC
Confidence            766543

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=99.71  E-value=2e-16  Score=140.14  Aligned_cols=148  Identities=14%  Similarity=0.086  Sum_probs=121.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc-cccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .|+||+|+|+ |+||+.+++.+.+.++++|++++|++.  ..+..+.   +.+++ .+|+|++++++.    .++|+|+.
T Consensus         4 ~~~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~~----~~~D~V~i   73 (330)
T 3e9m_A            4 DKIRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRL--ENAQKMA---KELAIPVAYGSYEELCKD----ETIDIIYI   73 (330)
T ss_dssp             CCEEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSS--HHHHHHH---HHTTCCCCBSSHHHHHHC----TTCSEEEE
T ss_pred             CeEEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHH---HHcCCCceeCCHHHHhcC----CCCCEEEE
Confidence            4689999997 999999999999999999999999752  2233333   24566 479999999974    57999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.+.+..|  |...+..++++.+  .+..-++..+
T Consensus        74 ~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~--~g~iG~i~~i  151 (330)
T 3e9m_A           74 PTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQ--EGGLGEILWV  151 (330)
T ss_dssp             CCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHH--TTTTCSEEEE
T ss_pred             cCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHh--CCCCCCeEEE
Confidence            99999999999999999999999999 89999999999999999999998877  7777777777664  2234466655


Q ss_pred             eccC
Q 027650          190 ESRP  193 (220)
Q Consensus       190 E~HH  193 (220)
                      +.+.
T Consensus       152 ~~~~  155 (330)
T 3e9m_A          152 QSVT  155 (330)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=99.71  E-value=3e-16  Score=140.78  Aligned_cols=145  Identities=16%  Similarity=0.174  Sum_probs=120.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ++||+|+|+ |+||+.+++.+...++++|++++|++.  ..+ +.+   ...|+++|+|++++++.    .++|+|+.+|
T Consensus         5 ~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~-~~a---~~~g~~~~~~~~~ll~~----~~~D~V~i~t   73 (359)
T 3e18_A            5 KYQLVIVGY-GGMGSYHVTLASAADNLEVHGVFDILA--EKR-EAA---AQKGLKIYESYEAVLAD----EKVDAVLIAT   73 (359)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSH--HHH-HHH---HTTTCCBCSCHHHHHHC----TTCCEEEECS
T ss_pred             cCcEEEECc-CHHHHHHHHHHHhCCCcEEEEEEcCCH--HHH-HHH---HhcCCceeCCHHHHhcC----CCCCEEEEcC
Confidence            589999997 999999999999999999999999742  112 222   25678899999999974    5799999999


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEEec
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVES  191 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIiE~  191 (220)
                      ++..+.+.+..|+++|+||++++| +.+.++.++|.++|+++|+.+.+.-|  |...+..++++.+.  +..-++..++.
T Consensus        74 p~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~~~~  151 (359)
T 3e18_A           74 PNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQ--KTIGEMFHLES  151 (359)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHH--TTTSSEEEEEE
T ss_pred             CcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHc--CCCCCeEEEEE
Confidence            999999999999999999999999 89999999999999999999998776  77777667766632  34456666665


Q ss_pred             c
Q 027650          192 R  192 (220)
Q Consensus       192 H  192 (220)
                      +
T Consensus       152 ~  152 (359)
T 3e18_A          152 R  152 (359)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=99.71  E-value=1.5e-16  Score=143.98  Aligned_cols=147  Identities=14%  Similarity=0.117  Sum_probs=121.7

Q ss_pred             CCceEEEEcCCC-HHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVK-EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~G-rMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +++||+|+|+ | +||+.+++.+...++++|++++|++.  ..+.++.   +.+|+++|+|++++++.    .++|+|+.
T Consensus         1 ~~~rigiiG~-G~~~~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~g~~~~~~~~ell~~----~~vD~V~i   70 (387)
T 3moi_A            1 MKIRFGICGL-GFAGSVLMAPAMRHHPDAQIVAACDPNE--DVRERFG---KEYGIPVFATLAEMMQH----VQMDAVYI   70 (387)
T ss_dssp             CCEEEEEECC-SHHHHTTHHHHHHHCTTEEEEEEECSCH--HHHHHHH---HHHTCCEESSHHHHHHH----SCCSEEEE
T ss_pred             CceEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEEEeCCH--HHHHHHH---HHcCCCeECCHHHHHcC----CCCCEEEE
Confidence            3689999997 8 99999999999999999999999742  2223333   24578899999999985    57999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      +|++..+.+.+..|+++|+||++++| ..+.++.++|.++|+++|+.+.+..|  |...+.-++++.+.  +..-++..+
T Consensus        71 ~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~i~~~  148 (387)
T 3moi_A           71 ASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLRAIVQE--GSVGRVSML  148 (387)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHH--CTTCCEEEE
T ss_pred             cCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHhc--CCCCCeEEE
Confidence            99999999999999999999999999 89999999999999999999998877  66777666666532  344567666


Q ss_pred             ecc
Q 027650          190 ESR  192 (220)
Q Consensus       190 E~H  192 (220)
                      +.+
T Consensus       149 ~~~  151 (387)
T 3moi_A          149 NCF  151 (387)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=99.71  E-value=2e-16  Score=140.58  Aligned_cols=150  Identities=14%  Similarity=0.110  Sum_probs=121.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      +|+||+|+|+ |+||+.+++.+. ..++++|++++|++.  ..+..+.   +.+|  +.+|+|++++++.    .++|+|
T Consensus         1 M~~rigiIG~-G~~g~~~~~~l~~~~~~~~l~av~d~~~--~~~~~~~---~~~g~~~~~~~~~~~ll~~----~~~D~V   70 (344)
T 3mz0_A            1 MSLRIGVIGT-GAIGKEHINRITNKLSGAEIVAVTDVNQ--EAAQKVV---EQYQLNATVYPNDDSLLAD----ENVDAV   70 (344)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTCSSEEEEEEECSSH--HHHHHHH---HHTTCCCEEESSHHHHHHC----TTCCEE
T ss_pred             CeEEEEEECc-cHHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHH---HHhCCCCeeeCCHHHHhcC----CCCCEE
Confidence            3689999997 999999999998 789999999999742  2222332   1345  5789999999984    579999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceE-EEcCC--CcHHHHHHHHHHHHhcCCCCCe
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGC-LIAPT--LSIGSILLQQAAISASFHYKNV  186 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~v-viapN--fS~Gv~ll~~~a~~~~~~~~di  186 (220)
                      +.+|++..+.+.+..|+++|+||++++| +.+.++.++|.++|+++|+.+ .+.-|  |...+..++++.+.  +..-++
T Consensus        71 ~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i  148 (344)
T 3mz0_A           71 LVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDN--HVIGEP  148 (344)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHHHT--TTTSSE
T ss_pred             EECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHHHHc--CCCCCc
Confidence            9999999999999999999999999999 899999999999999999988 56555  77887777766632  345577


Q ss_pred             EEEeccCCC
Q 027650          187 EIVESRPNA  195 (220)
Q Consensus       187 EIiE~HH~~  195 (220)
                      ..++..++.
T Consensus       149 ~~v~~~~~~  157 (344)
T 3mz0_A          149 LMIHCAHRN  157 (344)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            777665544

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=99.71  E-value=3.4e-16  Score=140.34  Aligned_cols=144  Identities=12%  Similarity=0.057  Sum_probs=120.0

Q ss_pred             CCceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      .|+||+|+|+ |+||+. +++.+...|+++|++++|++..  .+.+      .+ ++++|+|++++++.    .++|+|+
T Consensus         4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~--~~~~------~~~~~~~~~~~~~ll~~----~~vD~V~   70 (362)
T 3fhl_A            4 EIIKTGLAAF-GMSGQVFHAPFISTNPHFELYKIVERSKE--LSKE------RYPQASIVRSFKELTED----PEIDLIV   70 (362)
T ss_dssp             CCEEEEESCC-SHHHHHTTHHHHHHCTTEEEEEEECSSCC--GGGT------TCTTSEEESCSHHHHTC----TTCCEEE
T ss_pred             CceEEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCHH--HHHH------hCCCCceECCHHHHhcC----CCCCEEE
Confidence            4689999997 999997 8999999999999999997531  1221      33 67889999999984    5799999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEE
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI  188 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEI  188 (220)
                      .+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.+..|  |...+.-++++.+  .+..-++.-
T Consensus        71 i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~--~G~iG~i~~  148 (362)
T 3fhl_A           71 VNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDADFLTVRDILA--KSLLGRLVE  148 (362)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHH--TTTTSSEEE
T ss_pred             EeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCHHHHHHHHHHH--cCCCCCeEE
Confidence            999999999999999999999999999 89999999999999999999998877  7788776776663  223456666


Q ss_pred             Eecc
Q 027650          189 VESR  192 (220)
Q Consensus       189 iE~H  192 (220)
                      ++.+
T Consensus       149 v~~~  152 (362)
T 3fhl_A          149 YEST  152 (362)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=99.70  E-value=5.8e-16  Score=139.15  Aligned_cols=145  Identities=14%  Similarity=0.129  Sum_probs=119.7

Q ss_pred             CCceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .|+||+|+|+ |+||+. +++.+...|+++|++++|++.  ..+.+.     ..++++|+|++++++.    .++|+|+.
T Consensus         6 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~-----~~~~~~~~~~~~ll~~----~~~D~V~i   73 (364)
T 3e82_A            6 NTINIALIGY-GFVGKTFHAPLIRSVPGLNLAFVASRDE--EKVKRD-----LPDVTVIASPEAAVQH----PDVDLVVI   73 (364)
T ss_dssp             -CEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCH--HHHHHH-----CTTSEEESCHHHHHTC----TTCSEEEE
T ss_pred             CcceEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHhh-----CCCCcEECCHHHHhcC----CCCCEEEE
Confidence            5699999997 999996 899999999999999999752  122211     2367889999999974    57999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      +|++..+.+.+..|+++|+||++++| +.+.++.++|.++|+++|+.+.+..|  |...+.-++++.+.  +..-++..+
T Consensus        74 ~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~~  151 (364)
T 3e82_A           74 ASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIEQ--GTLGAVKHF  151 (364)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHH--TTTCSEEEE
T ss_pred             eCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeecccCHHHHHHHHHHHc--CCCcceEEE
Confidence            99999999999999999999999999 89999999999999999999998876  78888777776642  344566666


Q ss_pred             ecc
Q 027650          190 ESR  192 (220)
Q Consensus       190 E~H  192 (220)
                      +.+
T Consensus       152 ~~~  154 (364)
T 3e82_A          152 ESH  154 (364)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            655

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=99.70  E-value=4.8e-16  Score=138.34  Aligned_cols=148  Identities=18%  Similarity=0.112  Sum_probs=118.8

Q ss_pred             CCceEEEEcCCCHHHHH-HHH-HHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRA-AVI-AVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~~-~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      +|+||+|+|+ |+||+. +++ .+...++++|++++|++...  +....   ...++++|+|++++++.    .++|+|+
T Consensus         1 m~~rvgiiG~-G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~--~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~   70 (345)
T 3f4l_A            1 MVINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKP--EEQAP---IYSHIHFTSDLDEVLND----PDVKLVV   70 (345)
T ss_dssp             -CEEEEEECC-SHHHHHHTHHHHTTCTTTEEEEEEECSSCCG--GGGSG---GGTTCEEESCTHHHHTC----TTEEEEE
T ss_pred             CceEEEEEec-CHHHHHHHHHHHHhcCCCeEEEEEEcCCHhH--HHHHH---hcCCCceECCHHHHhcC----CCCCEEE
Confidence            4789999997 999985 888 55778999999999975321  11111   12367889999999974    5799999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEE
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI  188 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEI  188 (220)
                      .+|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.+.+.-|  |...+.-++++.+.  +..-++.-
T Consensus        71 i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~--g~iG~i~~  148 (345)
T 3f4l_A           71 VCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES--GKLGEIVE  148 (345)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHH--STTCSEEE
T ss_pred             EcCChHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEechhcCHHHHHHHHHHhc--CCCCCeEE
Confidence            999999999999999999999999999 89999999999999999999998877  67777667766632  23456766


Q ss_pred             EeccC
Q 027650          189 VESRP  193 (220)
Q Consensus       189 iE~HH  193 (220)
                      ++.+.
T Consensus       149 ~~~~~  153 (345)
T 3f4l_A          149 VESHF  153 (345)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            76663

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=99.70  E-value=3.7e-16  Score=139.12  Aligned_cols=148  Identities=12%  Similarity=0.043  Sum_probs=119.4

Q ss_pred             CCCceEEEEcCCC-HHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCc-cccCCHHHHHhccccCCCccE
Q 027650           33 QSNIKVIINGAVK-EIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        33 ~~~ikV~V~Ga~G-rMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      ..++||+|+|+ | .||+.+++.+.+. ++++|++++|++.  ..+.++.   +.+++ ++|+|++++++.    .++|+
T Consensus        16 ~~~irvgiIG~-G~~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~~~~~~~~~~~~ll~~----~~vD~   85 (340)
T 1zh8_A           16 LRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFA---KMVGNPAVFDSYEELLES----GLVDA   85 (340)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHH---HHHSSCEEESCHHHHHHS----SCCSE
T ss_pred             CCceeEEEEec-CHHHHHHHHHHHHhCCCceEEEEEEcCCH--HHHHHHH---HHhCCCcccCCHHHHhcC----CCCCE
Confidence            45799999997 9 8999999999988 8999999999742  2222232   13454 679999999974    57999


Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCe
Q 027650          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNV  186 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~di  186 (220)
                      |+.+|++..+.+.+..|+++|+||++++| +.+.++.++|.++|+++|+.+.+.-|  |...+..++++.+  .+..-++
T Consensus        86 V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~--~g~iG~i  163 (340)
T 1zh8_A           86 VDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRHVPAFWKAKELVE--SGAIGDP  163 (340)
T ss_dssp             EEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGGCHHHHHHHHHHH--TTTTSSE
T ss_pred             EEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHh--cCCCCCc
Confidence            99999999999999999999999999999 78999999999999999999998766  7777766666653  2234466


Q ss_pred             EEEecc
Q 027650          187 EIVESR  192 (220)
Q Consensus       187 EIiE~H  192 (220)
                      .-++.+
T Consensus       164 ~~v~~~  169 (340)
T 1zh8_A          164 VFMNWQ  169 (340)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666554

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=99.70  E-value=4e-16  Score=145.73  Aligned_cols=174  Identities=12%  Similarity=0.122  Sum_probs=131.7

Q ss_pred             eeecccccccccCCccccccCCC--------CCCCceEEEEcCC---CHHHHHHHHHHHhc-CCcEEEEEEecCCCCcch
Q 027650            9 HCRMHHISQNVKAKRFISCSTNP--------PQSNIKVIINGAV---KEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDI   76 (220)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ikV~V~Ga~---GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~   76 (220)
                      |-.-||-|.||+.+.-..-..+.        +..++||+|+|+.   |.||+.+++.+... ++++|++++|++.  ..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~--~~a   82 (479)
T 2nvw_A            5 HHHHHHSSENLYFQGHMLANNNKRSKLSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTL--KSS   82 (479)
T ss_dssp             ---CTTCGGGTGGGTCCCCCCCTTSGGGSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCH--HHH
T ss_pred             cccccccchhHHHHHHHHhhccccccCCCCCCCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCH--HHH
Confidence            44568889999876543222222        2345899999973   99999999999988 9999999999742  122


Q ss_pred             hhhhcCCCCCCcc---ccCCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCC------CcEEEeCC-CCCHHHHH
Q 027650           77 GMVCDMEQPLEIP---VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVS  146 (220)
Q Consensus        77 g~l~g~~~~~gv~---v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G------~~vVigTt-G~~~e~~~  146 (220)
                      ..+.   +.+|++   +|+|++++++.    .++|+|+.+|++..+.+.+..|+++|      +||+|++| +.+.++.+
T Consensus        83 ~~~a---~~~g~~~~~~~~d~~ell~~----~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~  155 (479)
T 2nvw_A           83 LQTI---EQLQLKHATGFDSLESFAQY----KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAE  155 (479)
T ss_dssp             HHHH---HHTTCTTCEEESCHHHHHHC----TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHH
T ss_pred             HHHH---HHcCCCcceeeCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHH
Confidence            2222   134554   89999999974    57999999999999999999999999      99999999 78999999


Q ss_pred             HHHHHhhhcC-ceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEEeccC
Q 027650          147 ALSAFCDKAS-MGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVESRP  193 (220)
Q Consensus       147 ~L~~aA~~~~-v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIiE~HH  193 (220)
                      +|.++|+++| +.+.+.-|  |...+..++++.+  .+..-++..++.+.
T Consensus       156 ~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~--~G~iG~i~~v~~~~  203 (479)
T 2nvw_A          156 ELYSISQQRANLQTIICLQGRKSPYIVRAKELIS--EGCIGDINSIEISG  203 (479)
T ss_dssp             HHHHHHHTCTTCEEEEECGGGGCHHHHHHHHHHH--TTTTCSEEEEEEEE
T ss_pred             HHHHHHHHcCCeEEEEEeccccCHHHHHHHHHHH--cCCCCCeEEEEEEe
Confidence            9999999999 88888766  7777766776663  22344666665543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=99.70  E-value=3.3e-16  Score=139.73  Aligned_cols=147  Identities=16%  Similarity=0.142  Sum_probs=120.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..|+||+|+|+ |+||+.+++.+.+. ++++|++++|++.  ..+..+.   +.+|+++|+|++++++.    .++|+|+
T Consensus        11 ~~~~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~~---~~~~~~~~~~~~~ll~~----~~~D~V~   80 (354)
T 3q2i_A           11 DRKIRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDP--AALKAAV---ERTGARGHASLTDMLAQ----TDADIVI   80 (354)
T ss_dssp             SSCEEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHHCCEEESCHHHHHHH----CCCSEEE
T ss_pred             CCcceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCH--HHHHHHH---HHcCCceeCCHHHHhcC----CCCCEEE
Confidence            35799999997 99999999999988 8999999999742  2223333   24567889999999974    5899999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEE
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEI  188 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEI  188 (220)
                      .+|++..+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.+++..|  |...+.-++++.+  .+..-++..
T Consensus        81 i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~--~g~iG~i~~  158 (354)
T 3q2i_A           81 LTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQ--EKRFGRIYM  158 (354)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHH--TTTTCSEEE
T ss_pred             ECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHh--cCCCCceEE
Confidence            999999999999999999999999999 89999999999999999999998877  7777766666653  233456665


Q ss_pred             Eec
Q 027650          189 VES  191 (220)
Q Consensus       189 iE~  191 (220)
                      ++.
T Consensus       159 v~~  161 (354)
T 3q2i_A          159 VNV  161 (354)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=99.69  E-value=4.2e-16  Score=138.02  Aligned_cols=150  Identities=11%  Similarity=-0.001  Sum_probs=120.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      +|+||+|+|+ |+||+.+++.+...+  +++|++++|++.  ..+.++.   +.++++ +|+|++++++.    .++|+|
T Consensus         1 M~~rigiiG~-G~ig~~~~~~l~~~~~~~~~l~av~d~~~--~~a~~~a---~~~~~~~~~~~~~~ll~~----~~vD~V   70 (334)
T 3ohs_X            1 MALRWGIVSV-GLISSDFTAVLQTLPRSEHQVVAVAARDL--SRAKEFA---QKHDIPKAYGSYEELAKD----PNVEVA   70 (334)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHTTSCTTTEEEEEEECSSH--HHHHHHH---HHHTCSCEESSHHHHHHC----TTCCEE
T ss_pred             CccEEEEECc-hHHHHHHHHHHHhCCCCCeEEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEE
Confidence            4689999996 999999999998877  479999999742  2223333   134564 79999999974    579999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeE
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVE  187 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diE  187 (220)
                      +.+|++..+.+.+..|+++|+||+|++| ..+.++.++|.++|+++|+.+.++-|  |...+.-++++.+.  +..-++.
T Consensus        71 ~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~  148 (334)
T 3ohs_X           71 YVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLAQ--GTLGDLR  148 (334)
T ss_dssp             EECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHHH--TTTCSEE
T ss_pred             EECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhcCHHHHHHHHHHhc--CCCCCeE
Confidence            9999999999999999999999999999 89999999999999999999998766  67777667766632  3445777


Q ss_pred             EEeccCCC
Q 027650          188 IVESRPNA  195 (220)
Q Consensus       188 IiE~HH~~  195 (220)
                      .++.+...
T Consensus       149 ~v~~~~~~  156 (334)
T 3ohs_X          149 VARAEFGK  156 (334)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEccC
Confidence            77766443

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=99.69  E-value=6.8e-16  Score=135.22  Aligned_cols=129  Identities=16%  Similarity=0.166  Sum_probs=107.5

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      +..|+||+|+|+ |.||+.+++.+..   .++++|++++|++...          ...|++ +.|++++++.    .++|
T Consensus         4 ~~~~~rvgiIG~-G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----------~~~g~~-~~~~~ell~~----~~vD   67 (294)
T 1lc0_A            4 NSGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----------SLDEVR-QISLEDALRS----QEID   67 (294)
T ss_dssp             CCCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----------EETTEE-BCCHHHHHHC----SSEE
T ss_pred             CCCcceEEEEEE-cHHHHHHHHHHhccccCCCEEEEEEECchHHH----------HHcCCC-CCCHHHHhcC----CCCC
Confidence            346799999997 9999999999876   6899999999974311          134555 5899999974    5799


Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHH
Q 027650          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAA  176 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a  176 (220)
                      +|+.+|++..+.++++.|+++|+||+|++| ..+.++.++|.++++++|+.++.+.+  |...+..++++.
T Consensus        68 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i  138 (294)
T 1lc0_A           68 VAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREV  138 (294)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHH
T ss_pred             EEEEeCCcHhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhccHHHHHHHHHH
Confidence            999999999999999999999999999999 78999999999999999999998887  555554455443

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=99.69  E-value=2e-16  Score=139.26  Aligned_cols=120  Identities=16%  Similarity=0.193  Sum_probs=102.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ..+||+|+|++|+||+.+++.+.+. ++++++.+++...|+.         ..|+++|.+++++.++    .++|++|+|
T Consensus         6 ~~~~VaVvGasG~~G~~~~~~l~~~-g~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~Dv~Ii~   71 (288)
T 1oi7_A            6 RETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGME---------VLGVPVYDTVKEAVAH----HEVDASIIF   71 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----SCCSEEEEC
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHc-CCeEEEEECCCCCCce---------ECCEEeeCCHHHHhhc----CCCCEEEEe
Confidence            3479999999999999999998875 8999988887542221         3478999999999863    379999999


Q ss_pred             cCchhHHHHHHHHHHCCCc-EEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          114 TDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~-vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      ++|+.+.+.++.|+++|++ +|+.|+|+++++.++|.+++++.++. ++.|| ++|+
T Consensus        72 vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~-vigPN-c~Gi  126 (288)
T 1oi7_A           72 VPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSR-LIGGN-CPGI  126 (288)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EEESS-SCEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEeCC-CCeE
Confidence            9999999999999999999 78889999999999999999998885 66788 6666

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=99.69  E-value=1.3e-15  Score=134.63  Aligned_cols=134  Identities=11%  Similarity=0.109  Sum_probs=110.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHH--------hccccCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVL--------GSISQSK  105 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l--------~~~~~~~  105 (220)
                      .|+||+|+|+.|.||+.+++.+.+. +.+|++++|++..-   .....  ...++++|+|+++++        +.    .
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~---~~~~~--~~~~~~~~~~~~~ll~~~~~l~~~~----~   71 (312)
T 3o9z_A            2 HMTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNV---GLVDS--FFPEAEFFTEPEAFEAYLEDLRDRG----E   71 (312)
T ss_dssp             -CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCC---GGGGG--TCTTCEEESCHHHHHHHHHHHHHTT----C
T ss_pred             CceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHH---HHHHh--hCCCCceeCCHHHHHHHhhhhcccC----C
Confidence            4899999998678999999999876 79999999975321   11221  123678899999998        33    5


Q ss_pred             CccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHH
Q 027650          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAI  177 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~  177 (220)
                      ++|+|+.+|++..+.++++.|+++|+||+|++| +.+.++.++|.++|+++|+.+.+.-|  |...+.-++++.+
T Consensus        72 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  146 (312)
T 3o9z_A           72 GVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVLQLRVHPSLLALKERLG  146 (312)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHHH
T ss_pred             CCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEeehhcCHHHHHHHHHHH
Confidence            899999999999999999999999999999999 89999999999999999999988766  6666655666553

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=99.68  E-value=9.9e-16  Score=135.56  Aligned_cols=150  Identities=8%  Similarity=0.067  Sum_probs=119.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecCCCCcchhhhhcCCCCCCc-cccCCHHHHHhccccCCCccEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      ..|+||+|+|+ |+||+.+++.+. ..++++|++++|++.  ..+..+.   +.+|+ .+++|++++++.    .++|+|
T Consensus         6 ~~~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~l~~----~~~D~V   75 (346)
T 3cea_A            6 RKPLRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDS--NQLEWAK---NELGVETTYTNYKDMIDT----ENIDAI   75 (346)
T ss_dssp             CCCEEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCH--HHHHHHH---HTTCCSEEESCHHHHHTT----SCCSEE
T ss_pred             CCcceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCH--HHHHHHH---HHhCCCcccCCHHHHhcC----CCCCEE
Confidence            45799999997 999999999998 789999999999742  1222232   24466 578999999863    479999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhc-CceEEEcCC--CcHHHHHHHHHHHHhcCCCCCe
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKA-SMGCLIAPT--LSIGSILLQQAAISASFHYKNV  186 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~-~v~vviapN--fS~Gv~ll~~~a~~~~~~~~di  186 (220)
                      +++|++..+.+.+..++++|++|++++| +++.++.++|.++++++ |+.+++..|  |..++..++++.+  .+..-++
T Consensus        76 ~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~--~g~iG~i  153 (346)
T 3cea_A           76 FIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVD--NGDIGKI  153 (346)
T ss_dssp             EECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHH--TTTTCSE
T ss_pred             EEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHH--cCCCCCe
Confidence            9999999999999999999999999998 78999999999999998 999988776  6777766666653  2234567


Q ss_pred             EEEeccCC
Q 027650          187 EIVESRPN  194 (220)
Q Consensus       187 EIiE~HH~  194 (220)
                      ..++.++.
T Consensus       154 ~~v~~~~~  161 (346)
T 3cea_A          154 IYMRGYGI  161 (346)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            76666543

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.68  E-value=1.8e-16  Score=134.33  Aligned_cols=145  Identities=17%  Similarity=0.191  Sum_probs=117.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+|+|+ |+||+.+++.+. .++++|++++|++.   ...       .    .++|++++++     .++|+||++++
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~-~~g~~lv~v~d~~~---~~~-------~----~~~~~~~l~~-----~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLE-RNGFEIAAILDVRG---EHE-------K----MVRGIDEFLQ-----REMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH-HTTCEEEEEECSSC---CCT-------T----EESSHHHHTT-----SCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHh-cCCCEEEEEEecCc---chh-------h----hcCCHHHHhc-----CCCCEEEECCC
Confidence            59999997 999999999988 58999999999752   110       1    5789999884     27999999999


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCCCC-CHHHH-HHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEEeccC
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVPHI-QLETV-SALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRP  193 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTtG~-~~e~~-~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIiE~HH  193 (220)
                      ++.+.+++..++++|+++|+++|+. +.++. ++|.++++++|+.+++.+|++.|+..+.. . .+  ....+.+.+.+|
T Consensus        60 ~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~-~-~~--~~~~~~~~~~~~  135 (236)
T 2dc1_A           60 QQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFS-A-SE--LIEEIVLTTRKN  135 (236)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHH-T-GG--GEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHH-h-hc--cccEEEEEEEcC
Confidence            9999999999999999999999965 44455 78999999999999999999999866542 2 12  345677888888


Q ss_pred             CCCCCCC----chhhH
Q 027650          194 NARMQLK----SPTTS  205 (220)
Q Consensus       194 ~~K~DaP----SGTA~  205 (220)
                      ..+.+.|    .|++.
T Consensus       136 ~~~~~~~~~~~~G~~~  151 (236)
T 2dc1_A          136 WRQFGRKGVIFEGSAS  151 (236)
T ss_dssp             GGGTTSCEEEEEEEHH
T ss_pred             hHHcCcceEEEeccHH
Confidence            8888777    56653

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=99.68  E-value=6.9e-16  Score=138.24  Aligned_cols=145  Identities=14%  Similarity=0.112  Sum_probs=118.3

Q ss_pred             CCceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .|+||+|+|+ |+||+. +++.+...|+++|++++|++.  ..+.+.     -.++++|+|++++++.    .++|+|+.
T Consensus         4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~-----~~~~~~~~~~~~ll~~----~~vD~V~i   71 (358)
T 3gdo_A            4 DTIKVGILGY-GLSGSVFHGPLLDVLDEYQISKIMTSRT--EEVKRD-----FPDAEVVHELEEITND----PAIELVIV   71 (358)
T ss_dssp             TCEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECSCH--HHHHHH-----CTTSEEESSTHHHHTC----TTCCEEEE
T ss_pred             CcceEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEEcCCH--HHHHhh-----CCCCceECCHHHHhcC----CCCCEEEE
Confidence            4689999997 999996 899998899999999999752  112211     1267889999999974    57999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      +|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.+..|  |...+..++++.+.  +..-++.-+
T Consensus        72 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~--g~iG~i~~~  149 (358)
T 3gdo_A           72 TTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISE--GSLEDINTY  149 (358)
T ss_dssp             CSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHT--TSSCSCCEE
T ss_pred             cCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHHhc--CCCCceEEE
Confidence            99999999999999999999999999 89999999999999999999998877  77777777766632  233455555


Q ss_pred             ecc
Q 027650          190 ESR  192 (220)
Q Consensus       190 E~H  192 (220)
                      +.+
T Consensus       150 ~~~  152 (358)
T 3gdo_A          150 QVS  152 (358)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=99.68  E-value=2.1e-16  Score=140.67  Aligned_cols=146  Identities=14%  Similarity=0.091  Sum_probs=115.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-------EEEEEEecCCCCcchhhhhcCCCCCCc-cccCCHHHHHhccccCCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-------EVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-------eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v~~dl~~~l~~~~~~~~  106 (220)
                      ++||||+|+ |+||+.+++.+...|++       +|++++|++.  ..+..+.   +.+|+ .+|+|++++++.    .+
T Consensus         6 klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~--~~a~~~a---~~~g~~~~~~d~~~ll~~----~~   75 (390)
T 4h3v_A            6 NLGIGLIGY-AFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDA--EAVRAAA---GKLGWSTTETDWRTLLER----DD   75 (390)
T ss_dssp             EEEEEEECH-HHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSH--HHHHHHH---HHHTCSEEESCHHHHTTC----TT
T ss_pred             cCcEEEEcC-CHHHHHHHHHHHhCccccccccCceEEEEEcCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CC
Confidence            389999997 99999999999887754       9999999752  2222333   13454 479999999975    68


Q ss_pred             ccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHH---hhhcCceEEEcCC--CcHHHHHHHHHHHHhc
Q 027650          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAF---CDKASMGCLIAPT--LSIGSILLQQAAISAS  180 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~a---A~~~~v~vviapN--fS~Gv~ll~~~a~~~~  180 (220)
                      +|+|+.+|++..|.+.+..|+++|+||+|++| +.+.+|.++|.++   ++++|+.+.+.-|  |...+..++++.+  .
T Consensus        76 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~~R~~p~~~~~k~~i~--~  153 (390)
T 4h3v_A           76 VQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFTYRRVPAIALARKLVA--D  153 (390)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHH--T
T ss_pred             CCEEEEeCChHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCceEEEeeeccCchHHHHHHHHH--c
Confidence            99999899999999999999999999999999 8999999999666   6668999988766  6777766666653  2


Q ss_pred             CCCCCeEEEecc
Q 027650          181 FHYKNVEIVESR  192 (220)
Q Consensus       181 ~~~~diEIiE~H  192 (220)
                      +..-++..++.+
T Consensus       154 g~iG~i~~v~~~  165 (390)
T 4h3v_A          154 GKIGTVRHVRAQ  165 (390)
T ss_dssp             TSSCSEEEEEEE
T ss_pred             CCCCcceeeEEE
Confidence            345566666554

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=99.68  E-value=5e-16  Score=136.57  Aligned_cols=120  Identities=18%  Similarity=0.269  Sum_probs=102.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .++||+|+|++|+||+.+++.+.+. ++++++.+++...|+.         ..|+++|.+++++.++    .++|++|+|
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~-g~~~V~~V~p~~~g~~---------~~G~~vy~sl~el~~~----~~~D~viI~   71 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGGTT---------HLGLPVFNTVREAVAA----TGATASVIY   71 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCcccce---------eCCeeccCCHHHHhhc----CCCCEEEEe
Confidence            4579999999999999999998876 7899999987532221         3578999999999863    379999999


Q ss_pred             cCchhHHHHHHHHHHCCCcE-EEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          114 TDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~v-VigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      ++|+.+.+.++.|+++|+++ |+.|+|++.++.++|.++|++.++.+ +.|| ++|+
T Consensus        72 tP~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~l-iGPN-c~Gi  126 (288)
T 2nu8_A           72 VPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRM-IGPN-TPGV  126 (288)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEE-ECSS-CCEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEE-EecC-Ccce
Confidence            99999999999999999997 66788999999999999999988864 7899 5555

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=99.68  E-value=2.6e-16  Score=141.43  Aligned_cols=165  Identities=12%  Similarity=0.052  Sum_probs=113.2

Q ss_pred             ccccccccCCccccccCCCCCCCceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-ccc
Q 027650           13 HHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IPV   90 (220)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g-v~v   90 (220)
                      ||-|+.|.-++...+= .++-.++||||+|+ |++|.. ++..+. .++++|++++|++.  ..+.+++.   .++ +++
T Consensus         5 ~~~~~~~~~~~~~~~~-~~Mm~~irvgiiG~-G~~~~~~~~~~~~-~~~~~lvav~d~~~--~~a~~~a~---~~~~~~~   76 (361)
T 3u3x_A            5 HHHSSGVDLGTENLYF-QSMMDELRFAAVGL-NHNHIYGQVNCLL-RAGARLAGFHEKDD--ALAAEFSA---VYADARR   76 (361)
T ss_dssp             ----------------------CCEEEEECC-CSTTHHHHHHHHH-HTTCEEEEEECSCH--HHHHHHHH---HSSSCCE
T ss_pred             ccccccccCCCccchh-hhhccCcEEEEECc-CHHHHHHHHHHhh-cCCcEEEEEEcCCH--HHHHHHHH---HcCCCcc
Confidence            5667777766665443 22223589999997 999964 556554 59999999999742  22233331   334 578


Q ss_pred             cCCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--C-c
Q 027650           91 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--L-S  166 (220)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--f-S  166 (220)
                      |+|++++++.    .++|+|+.+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++|+++|+.+.+.-|  | +
T Consensus        77 ~~~~~~ll~~----~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~~~  152 (361)
T 3u3x_A           77 IATAEEILED----ENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFES  152 (361)
T ss_dssp             ESCHHHHHTC----TTCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHHTC
T ss_pred             cCCHHHHhcC----CCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhhCC
Confidence            9999999984    5799999999999999999999999999999999 89999999999999999999999877  4 4


Q ss_pred             HHHHHHHHHHHHhcCCCCCeEEEec
Q 027650          167 IGSILLQQAAISASFHYKNVEIVES  191 (220)
Q Consensus       167 ~Gv~ll~~~a~~~~~~~~diEIiE~  191 (220)
                      ..+.-++++.+  .+..-++..++.
T Consensus       153 p~~~~~k~~i~--~g~iG~i~~~~~  175 (361)
T 3u3x_A          153 PATVKAGELVA--AGAIGEVVHIVG  175 (361)
T ss_dssp             HHHHHHHHHHH--TTTTSSEEEEEE
T ss_pred             HHHHHHHHHHH--cCCCCCeEEEEE
Confidence            66666666653  223446665554

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=99.68  E-value=2.9e-16  Score=138.00  Aligned_cols=136  Identities=18%  Similarity=0.198  Sum_probs=111.7

Q ss_pred             CCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      +++..++||+|+|+ |+||+.+++.+.+.+++++++++|++.  ..+..+.    .. +++++|++++++.    .++|+
T Consensus         5 p~~~~~~~igiIG~-G~~g~~~~~~l~~~~~~~~v~v~d~~~--~~~~~~~----~~-~~~~~~~~~~l~~----~~~D~   72 (315)
T 3c1a_A            5 PANNSPVRLALIGA-GRWGKNYIRTIAGLPGAALVRLASSNP--DNLALVP----PG-CVIESDWRSVVSA----PEVEA   72 (315)
T ss_dssp             ----CCEEEEEEEC-TTTTTTHHHHHHHCTTEEEEEEEESCH--HHHTTCC----TT-CEEESSTHHHHTC----TTCCE
T ss_pred             CCCCCcceEEEECC-cHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHH----hh-CcccCCHHHHhhC----CCCCE
Confidence            34556799999997 999999999999989999999999742  1122222    11 6778999999963    47999


Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHH
Q 027650          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAI  177 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~  177 (220)
                      |+.+|++..+.+.+..++++|+||++++| ..+.++.++|.++++++|+.+++..|  |...+..++++.+
T Consensus        73 V~i~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~  143 (315)
T 3c1a_A           73 VIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQLFNPAWEALKADLT  143 (315)
T ss_dssp             EEEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGGGCHHHHHHHHTHH
T ss_pred             EEEeCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechhcCHHHHHHHHHHH
Confidence            99999999999999999999999999998 78999999999999999999988765  7788877777765

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=99.68  E-value=6.2e-16  Score=142.39  Aligned_cols=150  Identities=9%  Similarity=0.030  Sum_probs=119.3

Q ss_pred             CCCceEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc-----cccCCHHHHHhccccCCC
Q 027650           33 QSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-----PVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-----~v~~dl~~~l~~~~~~~~  106 (220)
                      ..++||+|+|+ |+||+ .+++.+.+.++++|++++|++.  ..+..+..   .+|+     .+|+|++++++.    .+
T Consensus        81 ~~~irigiIG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~--~~~~~~a~---~~g~~~~~~~~~~~~~~ll~~----~~  150 (433)
T 1h6d_A           81 DRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNA--EKAKIVAA---EYGVDPRKIYDYSNFDKIAKD----PK  150 (433)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCH--HHHHHHHH---HTTCCGGGEECSSSGGGGGGC----TT
T ss_pred             CCceEEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHHH---HhCCCcccccccCCHHHHhcC----CC
Confidence            44689999997 99997 8999998889999999999742  11222221   2333     368999999974    57


Q ss_pred             ccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCC
Q 027650          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHY  183 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~  183 (220)
                      +|+|+++|++..+.+.+..|+++|+||++++| +++.++.++|.++++++|+.+++..|  |...+..++++.+  .+..
T Consensus       151 vD~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~--~G~i  228 (433)
T 1h6d_A          151 IDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIR--ENQL  228 (433)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHH--TTSS
T ss_pred             CCEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEEechhcCHHHHHHHHHHH--cCCC
Confidence            99999999999999999999999999999998 78999999999999999999998876  7777766666653  2344


Q ss_pred             CCeEEEeccCC
Q 027650          184 KNVEIVESRPN  194 (220)
Q Consensus       184 ~diEIiE~HH~  194 (220)
                      -++..++.+..
T Consensus       229 G~i~~v~~~~~  239 (433)
T 1h6d_A          229 GKLGMVTTDNS  239 (433)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCcEEEEEEEe
Confidence            57776665543

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=99.68  E-value=1.3e-15  Score=134.87  Aligned_cols=151  Identities=13%  Similarity=0.088  Sum_probs=115.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhc---cc--cCCCcc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGS---IS--QSKARA  108 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~---~~--~~~~~D  108 (220)
                      .|+||+|+|+.|.||+.+++.+.+. +.+|++++|++..-   .....  ...++++|+|++++++.   +.  .+.++|
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~---~~~~~--~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD   75 (318)
T 3oa2_A            2 HMKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSV---GIIDS--ISPQSEFFTEFEFFLDHASNLKRDSATALD   75 (318)
T ss_dssp             -CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCC---GGGGG--TCTTCEEESSHHHHHHHHHHHTTSTTTSCC
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHHH---HHHHh--hCCCCcEECCHHHHHHhhhhhhhccCCCCc
Confidence            4899999998678999999999876 89999999975321   12221  12367889999999820   00  015899


Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCC
Q 027650          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKN  185 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~d  185 (220)
                      +|+.+|++..+.++++.|+++|+||+|++| +.+.++.++|.++++++|+.+.+..|  |...+.-++++.+.  +..-+
T Consensus        76 ~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~--g~iG~  153 (318)
T 3oa2_A           76 YVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDKVAR--EKSPH  153 (318)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHH--S-CSS
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEEEEhhhcCHHHHHHHHHHhc--CCCCc
Confidence            999999999999999999999999999999 89999999999999999999988766  67777666666532  22334


Q ss_pred             eEEEecc
Q 027650          186 VEIVESR  192 (220)
Q Consensus       186 iEIiE~H  192 (220)
                      +.-++.+
T Consensus       154 i~~v~~~  160 (318)
T 3oa2_A          154 KYEVDLT  160 (318)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            5444444

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=99.67  E-value=1.1e-15  Score=137.08  Aligned_cols=147  Identities=15%  Similarity=0.138  Sum_probs=117.7

Q ss_pred             CceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ++||+|+|+ |+||+. +++.+.+.|+++|++++|++.  ..+..+..   .+ ++++|+|++++++.    .++|+|+.
T Consensus         5 ~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a~---~~~~~~~~~~~~~ll~~----~~vD~V~i   74 (359)
T 3m2t_A            5 LIKVGLVGI-GAQMQENLLPSLLQMQDIRIVAACDSDL--ERARRVHR---FISDIPVLDNVPAMLNQ----VPLDAVVM   74 (359)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTCTTEEEEEEECSSH--HHHGGGGG---TSCSCCEESSHHHHHHH----SCCSEEEE
T ss_pred             cceEEEECC-CHHHHHHHHHHHHhCCCcEEEEEEcCCH--HHHHHHHH---hcCCCcccCCHHHHhcC----CCCCEEEE
Confidence            589999997 999995 899999999999999999742  22233331   33 56789999999985    57899999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      +|++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++|+.+.+.-|  |...+.-++++.+  .+..-++..+
T Consensus        75 ~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~--~g~iG~i~~~  152 (359)
T 3m2t_A           75 AGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVGMNFKFARPVRQLREMTQ--VDEFGETLHI  152 (359)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEEECCHHHHCHHHHHHHHHHT--SGGGCCEEEE
T ss_pred             cCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCcHHHHHHHHHHH--CCCCCCeEEE
Confidence            99999999999999999999999999 89999999999999999999998876  6666655555542  2234466666


Q ss_pred             eccC
Q 027650          190 ESRP  193 (220)
Q Consensus       190 E~HH  193 (220)
                      +.+.
T Consensus       153 ~~~~  156 (359)
T 3m2t_A          153 QLNH  156 (359)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6543

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=99.67  E-value=3.4e-16  Score=140.02  Aligned_cols=149  Identities=13%  Similarity=0.157  Sum_probs=113.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC----ccccCCHHHHHhccccCCCcc
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE----IPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g----v~v~~dl~~~l~~~~~~~~~D  108 (220)
                      ..++||+|+|+ |+||+.+++.+...++++|++++|++.  ..+..+..   .++    +.+|+|++++++.    .++|
T Consensus         4 ~~~~~vgiiG~-G~ig~~~~~~l~~~~~~~lv~v~d~~~--~~~~~~a~---~~~~~~~~~~~~~~~~ll~~----~~~D   73 (362)
T 1ydw_A            4 ETQIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSL--EKAKAFAT---ANNYPESTKIHGSYESLLED----PEID   73 (362)
T ss_dssp             --CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHHH---HTTCCTTCEEESSHHHHHHC----TTCC
T ss_pred             CCceEEEEECc-hHHHHHHHHHHhhCCCcEEEEEEcCCH--HHHHHHHH---HhCCCCCCeeeCCHHHHhcC----CCCC
Confidence            45799999997 999999999999999999999999742  12222221   223    4678999999974    4799


Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCC
Q 027650          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKN  185 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~d  185 (220)
                      +|+.+|++..+.+.+..|+++|+||++++| +++.++.++|.++|+++|+.+++..|  |...+..++++.+. .+..-+
T Consensus        74 ~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~-g~~iG~  152 (362)
T 1ydw_A           74 ALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHNPRTALLKEFLSD-SERFGQ  152 (362)
T ss_dssp             EEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGGGSGGGTTTTTGGGC-TTTTCS
T ss_pred             EEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEEeeccCHHHHHHHHHHHh-cCCccc
Confidence            999999999999999999999999999998 78999999999999999999998765  45555434433311 012446


Q ss_pred             eEEEecc
Q 027650          186 VEIVESR  192 (220)
Q Consensus       186 iEIiE~H  192 (220)
                      +.-++.+
T Consensus       153 i~~v~~~  159 (362)
T 1ydw_A          153 LKTVQSC  159 (362)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            6655543

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=99.67  E-value=5.2e-16  Score=137.10  Aligned_cols=119  Identities=20%  Similarity=0.310  Sum_probs=101.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCC-ccEEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA-RAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~-~DVVIDf  113 (220)
                      +.||+|+|++|+||+.+++.+.+. ++++++.+++...|+.         ..|+++|.+++++.++    .. +|++|+|
T Consensus        13 ~~~vvV~Gasg~~G~~~~~~l~~~-g~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~~DvaIi~   78 (297)
T 2yv2_A           13 ETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTPGKGGSE---------VHGVPVYDSVKEALAE----HPEINTSIVF   78 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----CTTCCEEEEC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhC-CCcEEEEeCCCCCCce---------ECCEeeeCCHHHHhhc----CCCCCEEEEe
Confidence            468999999999999999998875 8898888887543322         2478999999999862    24 9999999


Q ss_pred             cCchhHHHHHHHHHHCCCc-EEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          114 TDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~-vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      ++|+.+.+.++.|+++|++ +|+.|+|+++++.++|.++|++.++. ++.|| ++|+
T Consensus        79 vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN-c~Gi  133 (297)
T 2yv2_A           79 VPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT-IIGPN-CPGA  133 (297)
T ss_dssp             CCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS-SCEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC-CCee
Confidence            9999999999999999999 88889999999999999999998875 67798 6776

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=99.66  E-value=6.5e-16  Score=135.17  Aligned_cols=128  Identities=16%  Similarity=0.208  Sum_probs=108.3

Q ss_pred             CceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      |+||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+..+.   +.+|++.|+|++++++      ++|+|+.+
T Consensus         6 ~~~igiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a---~~~~~~~~~~~~~ll~------~~D~V~i~   73 (308)
T 3uuw_A            6 NIKMGMIGL-GSIAQKAYLPILTKSERFEFVGAFTPNK--VKREKIC---SDYRIMPFDSIESLAK------KCDCIFLH   73 (308)
T ss_dssp             CCEEEEECC-SHHHHHHTHHHHTSCSSSEEEEEECSCH--HHHHHHH---HHHTCCBCSCHHHHHT------TCSEEEEC
T ss_pred             cCcEEEEec-CHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCCcCCHHHHHh------cCCEEEEe
Confidence            589999997 999996 899998889999999999742  2223333   1346677999999996      79999999


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHH
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQ  174 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~  174 (220)
                      |++..+.+.+..++++|+||++++| +.+.++.++|.++++++|+.+.+.-|  |...+..+++
T Consensus        74 tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~  137 (308)
T 3uuw_A           74 SSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMVGFNRRFCPMYKEIKN  137 (308)
T ss_dssp             CCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHH
T ss_pred             CCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCHHHHHHHH
Confidence            9999999999999999999999999 78999999999999999999998766  6777655554

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=99.66  E-value=1.5e-15  Score=139.98  Aligned_cols=156  Identities=10%  Similarity=0.042  Sum_probs=118.6

Q ss_pred             CCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC---ccccC----CHHHHHhccc
Q 027650           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE---IPVMS----DLTMVLGSIS  102 (220)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g---v~v~~----dl~~~l~~~~  102 (220)
                      .++..++||+|+|+ |+||+.+++.+...++++|++++|++.  ..+..+...-...|   +++|+    |++++++.  
T Consensus        15 ~~~~~~~rvgiIG~-G~~g~~h~~~l~~~~~~~lvav~d~~~--~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~--   89 (444)
T 2ixa_A           15 DFNPKKVRIAFIAV-GLRGQTHVENMARRDDVEIVAFADPDP--YMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKD--   89 (444)
T ss_dssp             ----CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSCH--HHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTC--
T ss_pred             cCCCCCceEEEEec-CHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcC--
Confidence            34456799999996 999999999999999999999999742  12222211000122   56788    99999974  


Q ss_pred             cCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHh
Q 027650          103 QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISA  179 (220)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~  179 (220)
                        .++|+|+.+|++..+.+.+..|+++|+||+|++| ..+.++.++|.++|+++|+.+.+.-|  |..++.-++++.+  
T Consensus        90 --~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~--  165 (444)
T 2ixa_A           90 --KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLMALENVCYRRDVMAILNMVR--  165 (444)
T ss_dssp             --TTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHHH--
T ss_pred             --CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHH--
Confidence              5799999999999999999999999999999999 78999999999999999999888655  6667655555553  


Q ss_pred             cCCCCCeEEEeccCC
Q 027650          180 SFHYKNVEIVESRPN  194 (220)
Q Consensus       180 ~~~~~diEIiE~HH~  194 (220)
                      .+.+-++.-++.+..
T Consensus       166 ~G~iG~i~~v~~~~~  180 (444)
T 2ixa_A          166 KGMFGELVHGTGGYQ  180 (444)
T ss_dssp             TTTTCSEEEEEECCB
T ss_pred             cCCCCCeEEEEEEEe
Confidence            224557777776543

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=99.66  E-value=2.2e-15  Score=132.58  Aligned_cols=144  Identities=14%  Similarity=0.059  Sum_probs=114.7

Q ss_pred             ceEEEEcCCCHHHHHH-HHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAA-VIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i-~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      |||+|+|+ |+||+.+ ++.+.+ +++++++++|++.  ..+.++.   +.+|++ +++|+++++..    .++|+|+.+
T Consensus         1 ~~vgiiG~-G~~g~~~~~~~l~~-~~~~~vav~d~~~--~~~~~~~---~~~g~~~~~~~~~~~l~~----~~~D~V~i~   69 (332)
T 2glx_A            1 NRWGLIGA-STIAREWVIGAIRA-TGGEVVSMMSTSA--ERGAAYA---TENGIGKSVTSVEELVGD----PDVDAVYVS   69 (332)
T ss_dssp             CEEEEESC-CHHHHHTHHHHHHH-TTCEEEEEECSCH--HHHHHHH---HHTTCSCCBSCHHHHHTC----TTCCEEEEC
T ss_pred             CeEEEEcc-cHHHHHhhhHHhhc-CCCeEEEEECCCH--HHHHHHH---HHcCCCcccCCHHHHhcC----CCCCEEEEe
Confidence            58999997 9999998 888888 9999999999742  1222222   134554 78999999863    479999999


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCCCCCeEEEe
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFHYKNVEIVE  190 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~~~diEIiE  190 (220)
                      |++..+.+.+..++++|+||++++| +.+.++.++|.++++++|+.+++..+  |..++.-++++.+  .+..-++.-++
T Consensus        70 tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~--~g~iG~i~~v~  147 (332)
T 2glx_A           70 TTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIA--EGRIGRPIAAR  147 (332)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHH--TTTTSSEEEEE
T ss_pred             CChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHH--cCCCCCeEEEE
Confidence            9999999999999999999999998 78999999999999999999998877  6677766666653  22344666555


Q ss_pred             cc
Q 027650          191 SR  192 (220)
Q Consensus       191 ~H  192 (220)
                      .+
T Consensus       148 ~~  149 (332)
T 2glx_A          148 VF  149 (332)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=99.66  E-value=5e-16  Score=137.03  Aligned_cols=119  Identities=19%  Similarity=0.340  Sum_probs=101.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +.||+|+|++|+||+.+++.+.+. ++++++.+++...|+.         ..|+++|.+++++.++    .++|++|+|+
T Consensus        13 ~~~v~V~Gasg~~G~~~~~~l~~~-g~~~V~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~~Dv~ii~v   78 (294)
T 2yv1_A           13 NTKAIVQGITGRQGSFHTKKMLEC-GTKIVGGVTPGKGGQN---------VHGVPVFDTVKEAVKE----TDANASVIFV   78 (294)
T ss_dssp             TCCEEEETTTSHHHHHHHHHHHHT-TCCEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCEEEEECCCCCHHHHHHHHHHhC-CCeEEEEeCCCCCCce---------ECCEeeeCCHHHHhhc----CCCCEEEEcc
Confidence            458999999999999999998875 8888888887533321         2478999999999863    3699999999


Q ss_pred             CchhHHHHHHHHHHCCCc-EEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          115 DASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~-vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      +|+.+.+.++.|+++|++ +|+.|+|+++++.++|.++|++.++. ++.|| ++|+
T Consensus        79 p~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN-c~Gi  132 (294)
T 2yv1_A           79 PAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK-IIGPN-TPGI  132 (294)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSS-CCEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC-Ccee
Confidence            999999999999999999 77789999999999999999998885 67799 6776

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=99.65  E-value=1.5e-15  Score=134.78  Aligned_cols=147  Identities=10%  Similarity=0.033  Sum_probs=114.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--CCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--VGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      +|+||+|+|+ |.+|+.+++.+  .++++|++++|++.  ..+.+.+...   .++  .++|+|++++++.    .++|+
T Consensus         1 M~~rvgiiG~-G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~----~~vD~   70 (337)
T 3ip3_A            1 MSLKICVIGS-SGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAIS---EMNIKPKKYNNWWEMLEK----EKPDI   70 (337)
T ss_dssp             -CEEEEEECS-SSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHH---TTTCCCEECSSHHHHHHH----HCCSE
T ss_pred             CceEEEEEcc-chhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHHH---HcCCCCcccCCHHHHhcC----CCCCE
Confidence            4799999997 88888888877  79999999999743  2223333321   223  4789999999984    47999


Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCce--EEEcCC--CcHHHHHHHHHHHHhcCCCC
Q 027650          110 VIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG--CLIAPT--LSIGSILLQQAAISASFHYK  184 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~--vviapN--fS~Gv~ll~~~a~~~~~~~~  184 (220)
                      |+.+|++..+.+.+..|+++|+||++++| +.+.++.++|.++|+++|+.  +.+.-|  |...+.-++++.+.  +..-
T Consensus        71 V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~~~~k~~i~~--g~iG  148 (337)
T 3ip3_A           71 LVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLVSE--GAVG  148 (337)
T ss_dssp             EEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHHHHHHHHHHH--TTTS
T ss_pred             EEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHHHHHHHHHhc--CCcc
Confidence            99999999999999999999999999999 88999999999999999988  666544  77777667766632  2345


Q ss_pred             CeEEEecc
Q 027650          185 NVEIVESR  192 (220)
Q Consensus       185 diEIiE~H  192 (220)
                      ++..++..
T Consensus       149 ~i~~i~~~  156 (337)
T 3ip3_A          149 EIRLVNTQ  156 (337)
T ss_dssp             SEEEEEEE
T ss_pred             ceEEEEEE
Confidence            66666553

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=99.64  E-value=3.3e-15  Score=135.59  Aligned_cols=151  Identities=15%  Similarity=0.096  Sum_probs=118.0

Q ss_pred             CCceEEEEcCCCH---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhhcCCCCCCc---cccCCHHHHHhccc-cCC
Q 027650           34 SNIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QSK  105 (220)
Q Consensus        34 ~~ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg-~vd~~~~g~d~g~l~g~~~~~gv---~v~~dl~~~l~~~~-~~~  105 (220)
                      .++||+|+|+ |+   ||+.++..+...++++|++ ++|++.  ..+.++.   +.+|+   .+|+|++++++.-. ...
T Consensus        11 ~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a---~~~g~~~~~~~~~~~~ll~~~~~~~~   84 (398)
T 3dty_A           11 QPIRWAMVGG-GSQSQIGYIHRCAALRDNTFVLVAGAFDIDP--IRGSAFG---EQLGVDSERCYADYLSMFEQEARRAD   84 (398)
T ss_dssp             SCEEEEEEEC-CTTCSSHHHHHHHHHGGGSEEEEEEECCSSH--HHHHHHH---HHTTCCGGGBCSSHHHHHHHHTTCTT
T ss_pred             CcceEEEEcC-CccchhHHHHHHHHhhCCCeEEEEEEeCCCH--HHHHHHH---HHhCCCcceeeCCHHHHHhcccccCC
Confidence            4699999997 99   9999999999889999998 677642  2223333   24566   58999999997200 002


Q ss_pred             CccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCC
Q 027650          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFH  182 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~  182 (220)
                      ++|+|+.+|++..+.+.+..|+++|+||+|++| +.+.++.++|.++++++|+.+.+.-|  |...+.-++++.+  .+.
T Consensus        85 ~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~--~G~  162 (398)
T 3dty_A           85 GIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGVTYGYAGHQLIEQAREMIA--AGE  162 (398)
T ss_dssp             CCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHHH--TTT
T ss_pred             CCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHh--cCC
Confidence            599999999999999999999999999999999 89999999999999999999998877  5666666666653  234


Q ss_pred             CCCeEEEecc
Q 027650          183 YKNVEIVESR  192 (220)
Q Consensus       183 ~~diEIiE~H  192 (220)
                      .-++..++.+
T Consensus       163 iG~i~~v~~~  172 (398)
T 3dty_A          163 LGDVRMVHMQ  172 (398)
T ss_dssp             TCSEEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            4566666654

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=99.63  E-value=1.9e-15  Score=135.98  Aligned_cols=148  Identities=14%  Similarity=0.188  Sum_probs=117.8

Q ss_pred             CCceEEEEcCCCHHHHH-HH----HHHHhcCCcEEE---------EEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHH
Q 027650           34 SNIKVIINGAVKEIGRA-AV----IAVTKARGMEVA---------GAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVL   98 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~----~~i~~~~~~eLv---------g~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l   98 (220)
                      .++||+|+|++|+||+. ++    +.+.+.++++|+         +++|++.  ..+..+.   +.+|++ +|+|+++++
T Consensus         5 ~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~--~~a~~~a---~~~~~~~~~~~~~~ll   79 (383)
T 3oqb_A            5 QRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSA--EKVEALA---KRFNIARWTTDLDAAL   79 (383)
T ss_dssp             EEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSS--HHHHHHH---HHTTCCCEESCHHHHH
T ss_pred             ceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCH--HHHHHHH---HHhCCCcccCCHHHHh
Confidence            46899999955999998 88    888888877765         6888642  2233333   245664 799999999


Q ss_pred             hccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHH
Q 027650           99 GSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQA  175 (220)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~  175 (220)
                      +.    .++|+|+.+|++..+.+.+..|+++|+||++++| +++.++.++|.++|+++|+.+.+..|  |...+..++++
T Consensus        80 ~~----~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~  155 (383)
T 3oqb_A           80 AD----KNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHGTVQDKLFLPGLKKIAFL  155 (383)
T ss_dssp             HC----SSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHH
T ss_pred             cC----CCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccCHHHHHHHHH
Confidence            85    5799999999999999999999999999999999 89999999999999999999998877  67777666666


Q ss_pred             HHHhcCCCCCeEEEecc
Q 027650          176 AISASFHYKNVEIVESR  192 (220)
Q Consensus       176 a~~~~~~~~diEIiE~H  192 (220)
                      .+  .+..-++.-++.+
T Consensus       156 i~--~g~iG~i~~~~~~  170 (383)
T 3oqb_A          156 RD--SGFFGRILSVRGE  170 (383)
T ss_dssp             HH--TTTTSSEEEEEEE
T ss_pred             HH--cCCCCCcEEEEEE
Confidence            53  2234566666553

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=99.63  E-value=2.4e-15  Score=132.18  Aligned_cols=129  Identities=14%  Similarity=0.201  Sum_probs=105.7

Q ss_pred             CceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ++||+|+|+ |+||+. +++.+.+.++++|++++|++.  ..+.++.   +.+|++++++++++ .     .++|+|+.+
T Consensus         5 ~~~vgiiG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~--~~~~~~~---~~~g~~~~~~~~~l-~-----~~~D~V~i~   72 (319)
T 1tlt_A            5 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTR--AKALPIC---ESWRIPYADSLSSL-A-----ASCDAVFVH   72 (319)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSC--TTHHHHH---HHHTCCBCSSHHHH-H-----TTCSEEEEC
T ss_pred             cceEEEECC-CHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHH---HHcCCCccCcHHHh-h-----cCCCEEEEe
Confidence            589999997 999996 899888889999999999753  1222222   13456678899877 4     489999999


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHH
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQA  175 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~  175 (220)
                      |++..+.+.+..|+++|++|++++| +++.++.++|.++|+++|+.+++.-|  |...+..++++
T Consensus        73 tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~k~~  137 (319)
T 1tlt_A           73 SSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQ  137 (319)
T ss_dssp             SCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCHHHHHHTTT
T ss_pred             CCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHH
Confidence            9999999999999999999999998 78999999999999999999887655  66666555444

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=99.62  E-value=1.6e-15  Score=133.77  Aligned_cols=128  Identities=18%  Similarity=0.195  Sum_probs=103.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ++||+|+|+ |+||+.+++.+.+.++++|++++|++..  .+..       .|++ +.+++++++.    .++|+|+++|
T Consensus         9 ~irv~IIG~-G~iG~~~~~~l~~~~~~elvav~d~~~~--~~~~-------~g~~-~~~~~~l~~~----~~~DvViiat   73 (304)
T 3bio_A            9 KIRAAIVGY-GNIGRYALQALREAPDFEIAGIVRRNPA--EVPF-------ELQP-FRVVSDIEQL----ESVDVALVCS   73 (304)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECC----------------CCTT-SCEESSGGGS----SSCCEEEECS
T ss_pred             CCEEEEECC-hHHHHHHHHHHhcCCCCEEEEEEcCCHH--HHHH-------cCCC-cCCHHHHHhC----CCCCEEEECC
Confidence            589999997 9999999999999999999999997431  1111       2333 2333333331    3799999999


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHH
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~  177 (220)
                      ++..+.+++..++++|+++|+++|  +.+.++.++|.+++++.|+.++++.+|..|+.-++++..
T Consensus        74 p~~~h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~v~~~~~p~~~~~~~~i~  138 (304)
T 3bio_A           74 PSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIASGWDPGSDSVVRTLM  138 (304)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHH
Confidence            999999999999999999999997  678999999999999999998999999999987776653

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=99.62  E-value=7.1e-16  Score=140.15  Aligned_cols=119  Identities=17%  Similarity=0.276  Sum_probs=99.5

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      +.++||+|+|+ | +|+.+++++.+.+ ++||+|++|++.  ..+.+++   +.+|++.|+|++++++      ++|+|+
T Consensus         5 ~~~~rv~VvG~-G-~g~~h~~a~~~~~~~~elvav~~~~~--~~a~~~a---~~~gv~~~~~~~~l~~------~~D~v~   71 (372)
T 4gmf_A            5 SPKQRVLIVGA-K-FGEMYLNAFMQPPEGLELVGLLAQGS--ARSRELA---HAFGIPLYTSPEQITG------MPDIAC   71 (372)
T ss_dssp             --CEEEEEECS-T-TTHHHHHTTSSCCTTEEEEEEECCSS--HHHHHHH---HHTTCCEESSGGGCCS------CCSEEE
T ss_pred             CCCCEEEEEeh-H-HHHHHHHHHHhCCCCeEEEEEECCCH--HHHHHHH---HHhCCCEECCHHHHhc------CCCEEE
Confidence            44799999996 8 8999999988776 699999999752  3344444   3678999999999986      799888


Q ss_pred             EccCchhH----HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          112 DFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       112 DfT~p~~~----~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      ..|++..+    ++.++.|+++|+||+|++| ++.+|.++|.++|+++|+.+.+.-+|
T Consensus        72 i~~p~~~h~~~~~~~a~~al~aGkhVl~EKP-l~~~ea~~l~~~A~~~g~~~~v~~~y  128 (372)
T 4gmf_A           72 IVVRSTVAGGAGTQLARHFLARGVHVIQEHP-LHPDDISSLQTLAQEQGCCYWINTFY  128 (372)
T ss_dssp             ECCC--CTTSHHHHHHHHHHHTTCEEEEESC-CCHHHHHHHHHHHHHHTCCEEEECSG
T ss_pred             EECCCcccchhHHHHHHHHHHcCCcEEEecC-CCHHHHHHHHHHHHHcCCEEEEcCcc
Confidence            78876666    8999999999999999999 79999999999999999999998775

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=99.62  E-value=3.8e-15  Score=137.22  Aligned_cols=148  Identities=11%  Similarity=0.064  Sum_probs=118.4

Q ss_pred             CCceEEEEcC---CCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCcc---ccCCHHHHHhccccCCC
Q 027650           34 SNIKVIINGA---VKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---VMSDLTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga---~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~---v~~dl~~~l~~~~~~~~  106 (220)
                      .++||+|+|+   .|+||+.+++.+.+. ++++|++++|++.  ..+..+.   +.+|++   +|+|++++++.    .+
T Consensus        19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~--~~~~~~a---~~~g~~~~~~~~~~~~ll~~----~~   89 (438)
T 3btv_A           19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKI--ETSIATI---QRLKLSNATAFPTLESFASS----ST   89 (438)
T ss_dssp             CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSH--HHHHHHH---HHTTCTTCEEESSHHHHHHC----SS
T ss_pred             CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCH--HHHHHHH---HHcCCCcceeeCCHHHHhcC----CC
Confidence            4589999997   499999999999998 9999999999742  1122222   133444   89999999974    47


Q ss_pred             ccEEEEccCchhHHHHHHHHHHCC------CcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHH
Q 027650          107 RAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAI  177 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G------~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~  177 (220)
                      +|+|+.+|++..+.+.+..|+++|      +||+|++| +.+.++.++|.++|+++|+.+++.-|  |...+.-++++.+
T Consensus        90 vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  169 (438)
T 3btv_A           90 IDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIISLQGRKSPYILRAKELIS  169 (438)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEEECGGGGCHHHHHHHHHHH
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEEecccccCHHHHHHHHHHH
Confidence            999999999999999999999999      99999999 78999999999999999999888755  7777766666653


Q ss_pred             HhcCCCCCeEEEecc
Q 027650          178 SASFHYKNVEIVESR  192 (220)
Q Consensus       178 ~~~~~~~diEIiE~H  192 (220)
                        .+..-++.-++.+
T Consensus       170 --~G~iG~i~~v~~~  182 (438)
T 3btv_A          170 --QGYIGDINSIEIA  182 (438)
T ss_dssp             --TTTTCSEEEEEEE
T ss_pred             --cCCCCCcEEEEEE
Confidence              2234466666554

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=99.61  E-value=6.1e-15  Score=134.97  Aligned_cols=151  Identities=17%  Similarity=0.121  Sum_probs=116.6

Q ss_pred             CCceEEEEcCCCH---HHHHHHHHHHhcCCcEEEE-EEecCCCCcchhhhhcCCCCCCc---cccCCHHHHHhccc-cCC
Q 027650           34 SNIKVIINGAVKE---IGRAAVIAVTKARGMEVAG-AIDSHSVGEDIGMVCDMEQPLEI---PVMSDLTMVLGSIS-QSK  105 (220)
Q Consensus        34 ~~ikV~V~Ga~Gr---MG~~i~~~i~~~~~~eLvg-~vd~~~~g~d~g~l~g~~~~~gv---~v~~dl~~~l~~~~-~~~  105 (220)
                      .++||+|+|+ |+   ||+.++..+...++++|++ ++|++.  ..+.++.   +.+|+   .+|+|++++++.-. ...
T Consensus        36 ~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~--~~a~~~a---~~~g~~~~~~~~~~~~ll~~~~~~~~  109 (417)
T 3v5n_A           36 KRIRLGMVGG-GSGAFIGAVHRIAARLDDHYELVAGALSSTP--EKAEASG---RELGLDPSRVYSDFKEMAIREAKLKN  109 (417)
T ss_dssp             CCEEEEEESC-C--CHHHHHHHHHHHHTSCEEEEEEECCSSH--HHHHHHH---HHHTCCGGGBCSCHHHHHHHHHHCTT
T ss_pred             CcceEEEEcC-CCchHHHHHHHHHHhhCCCcEEEEEEeCCCH--HHHHHHH---HHcCCCcccccCCHHHHHhcccccCC
Confidence            4589999997 99   9999999998889999997 777642  2222232   13455   58999999997200 002


Q ss_pred             CccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHhcCC
Q 027650          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISASFH  182 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~~~~  182 (220)
                      ++|+|+.+|++..+.+.++.|+++|+||+|++| +.+.++.++|.++++++|+.+.+.-|  |...+..++++.+  .+.
T Consensus       110 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~--~G~  187 (417)
T 3v5n_A          110 GIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLTHNYTGYPMVRQAREMIE--NGD  187 (417)
T ss_dssp             CCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEECGGGGSHHHHHHHHHHH--TTT
T ss_pred             CCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCCHHHHHHHHHHh--cCC
Confidence            599999999999999999999999999999999 89999999999999999999998877  5666666666653  234


Q ss_pred             CCCeEEEecc
Q 027650          183 YKNVEIVESR  192 (220)
Q Consensus       183 ~~diEIiE~H  192 (220)
                      .-++..++.+
T Consensus       188 iG~i~~v~~~  197 (417)
T 3v5n_A          188 IGAVRLVQME  197 (417)
T ss_dssp             TCSEEEEEEE
T ss_pred             CCCeEEEEEE
Confidence            4566666654

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=99.60  E-value=2.7e-14  Score=126.27  Aligned_cols=145  Identities=10%  Similarity=0.082  Sum_probs=112.8

Q ss_pred             CceEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ++||+|+|+ |+||. .+++.+. .++++|++++|++.  ..+..+..   .+ ++++|+|++++++.    .++|+|+.
T Consensus         4 ~~rvgiiG~-G~~~~~~~~~~l~-~~~~~lvav~d~~~--~~~~~~a~---~~~~~~~~~~~~~ll~~----~~~D~V~i   72 (336)
T 2p2s_A            4 KIRFAAIGL-AHNHIYDMCQQLI-DAGAELAGVFESDS--DNRAKFTS---LFPSVPFAASAEQLITD----ASIDLIAC   72 (336)
T ss_dssp             CCEEEEECC-SSTHHHHHHHHHH-HTTCEEEEEECSCT--TSCHHHHH---HSTTCCBCSCHHHHHTC----TTCCEEEE
T ss_pred             ccEEEEECC-ChHHHHHhhhhhc-CCCcEEEEEeCCCH--HHHHHHHH---hcCCCcccCCHHHHhhC----CCCCEEEE
Confidence            589999997 99996 5777764 58999999999753  12222221   23 56789999999974    57999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHH-HHHHHHHHHHhcCCCCCeEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIG-SILLQQAAISASFHYKNVEI  188 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~G-v~ll~~~a~~~~~~~~diEI  188 (220)
                      +|++..+.+.+..|+++|+||+|++| ..+.++.++|.++++++|+.+.+.-|  |... +.-++++.+  .+..-++.-
T Consensus        73 ~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~~~~~i~--~g~iG~i~~  150 (336)
T 2p2s_A           73 AVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFAVYFNERINVDSALFAGELVQ--RGEIGRVIQ  150 (336)
T ss_dssp             CSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEEECCTTTTTCHHHHHHHHHHH--TTTTSSEEE
T ss_pred             eCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCcHHHHHHHHHHh--CCCCCceEE
Confidence            99999999999999999999999999 78999999999999999999987755  5665 666666653  223446665


Q ss_pred             Eecc
Q 027650          189 VESR  192 (220)
Q Consensus       189 iE~H  192 (220)
                      ++.+
T Consensus       151 v~~~  154 (336)
T 2p2s_A          151 TMGV  154 (336)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=99.59  E-value=9e-15  Score=135.81  Aligned_cols=159  Identities=19%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----cCC----------------CCCCccccC
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----DME----------------QPLEIPVMS   92 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~----g~~----------------~~~gv~v~~   92 (220)
                      ..++||||+|+ |+||+.+++.+...|+++|++++|++.  ..+...+    |..                ...++.+|+
T Consensus        21 ~k~IRVGIIGa-G~iG~~~~~~l~~~~~veLvAV~D~~~--era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~   97 (446)
T 3upl_A           21 GKPIRIGLIGA-GEMGTDIVTQVARMQGIEVGALSARRL--PNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTD   97 (446)
T ss_dssp             TCCEEEEEECC-SHHHHHHHHHHTTSSSEEEEEEECSST--HHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEES
T ss_pred             CCceEEEEECC-hHHHHHHHHHHhhCCCcEEEEEEeCCH--HHHHHHHHHhcCCccccccccchhhhhhhhccCCceEEC
Confidence            45799999998 999999999999999999999999753  1122111    200                011356799


Q ss_pred             CHHHHHhccccCCCccEEEEccC-chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH
Q 027650           93 DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l  171 (220)
                      |++++++.    .++|+|+++|+ |..+.+++..|+++|+|||+.+.+++.++.++|.++|+++|+.+.++.+=..+...
T Consensus        98 D~eeLL~d----~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~~~gdqp~~~~  173 (446)
T 3upl_A           98 DNDLILSN----PLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLGAGDEPSSCM  173 (446)
T ss_dssp             CHHHHHTC----TTCCEEEECSCCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEECTTSHHHHHH
T ss_pred             CHHHHhcC----CCCCEEEEcCCChHHHHHHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeeecCCcchHHHH
Confidence            99999985    57999999995 56789999999999999999887888888999999999999988887765555521


Q ss_pred             -HHHHHHHhcCCCCCeEEEeccCCCCCCCCc
Q 027650          172 -LQQAAISASFHYKNVEIVESRPNARMQLKS  201 (220)
Q Consensus       172 -l~~~a~~~~~~~~diEIiE~HH~~K~DaPS  201 (220)
                       +.++++.+   .+.+-....-.+...+-|+
T Consensus       174 eLv~~a~~~---G~~~v~~Gkg~~~~~~~~~  201 (446)
T 3upl_A          174 ELIEFVSAL---GYEVVSAGKGKNNPLNFDA  201 (446)
T ss_dssp             HHHHHHHHT---TCEEEEEEEEESSCCCTTC
T ss_pred             HHHHHHHhC---CCeEEEeccCcCCcccCCC
Confidence             22334333   3566666666666555554

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=99.56  E-value=3.4e-14  Score=125.14  Aligned_cols=131  Identities=11%  Similarity=0.091  Sum_probs=104.8

Q ss_pred             CceEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      |+||+|+|+ |+||+ .+++.+.+.++++|+ ++|++.  ..+.++..   .+|++. +.+..++++     .++|+|+.
T Consensus         2 ~~~igiIG~-G~ig~~~~~~~l~~~~~~~l~-v~d~~~--~~~~~~a~---~~g~~~~~~~~~~~l~-----~~~D~V~i   69 (323)
T 1xea_A            2 SLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLAT---RYRVSATCTDYRDVLQ-----YGVDAVMI   69 (323)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHHH---HTTCCCCCSSTTGGGG-----GCCSEEEE
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCCCceEE-EEeCCH--HHHHHHHH---HcCCCccccCHHHHhh-----cCCCEEEE
Confidence            689999997 99998 499999888999999 998742  12222321   345553 445445554     38999999


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHH
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAI  177 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~  177 (220)
                      +|++..+.+.+..++++|++|++++| ..+.++.++|.++++++|+.+++.-|  |...+..++++.+
T Consensus        70 ~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~  137 (323)
T 1xea_A           70 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSELA  137 (323)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECGGGCCHHHHHHCHHHH
T ss_pred             ECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEeeccccCHHHHHHHHHHh
Confidence            99999999999999999999999998 78999999999999999999987755  7888877776654

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=99.52  E-value=2.2e-14  Score=128.34  Aligned_cols=162  Identities=15%  Similarity=0.104  Sum_probs=117.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc--------CCcEEEEEEecCCCC---cchhhhhcCCCCCCccccC--CHHHHHhcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA--------RGMEVAGAIDSHSVG---EDIGMVCDMEQPLEIPVMS--DLTMVLGSI  101 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--------~~~eLvg~vd~~~~g---~d~g~l~g~~~~~gv~v~~--dl~~~l~~~  101 (220)
                      |+||+|+|+ |.||+.+++.+.+.        ++++|++++|++..-   .+..++.... .....+++  |++++++. 
T Consensus         2 mirvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~-~~~~~~~~~~d~~~ll~~-   78 (327)
T 3do5_A            2 MIKIAIVGF-GTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMK-RETGMLRDDAKAIEVVRS-   78 (327)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHH-HHHSSCSBCCCHHHHHHH-
T ss_pred             cEEEEEEec-cHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhh-ccCccccCCCCHHHHhcC-
Confidence            899999996 99999999999887        899999999974211   1222221100 00123565  99999975 


Q ss_pred             ccCCCccEEEEccCchhH----HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHH
Q 027650          102 SQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (220)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~----~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~  177 (220)
                         .++|+|||+|+++.+    .+++..|+++|+|||++..+.-..+.++|.++|+++|+.+++-.++.-|.-++..+-.
T Consensus        79 ---~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g~Pii~~l~~  155 (327)
T 3do5_A           79 ---ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKR  155 (327)
T ss_dssp             ---SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTTSCCHHHHHT
T ss_pred             ---CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeecCHHHHHHHH
Confidence               589999999988776    8999999999999999976544467899999999999999998887777666655543


Q ss_pred             HhcCCCCCeEEEeccCCCCCCCCchhhHHHHHHh
Q 027650          178 SASFHYKNVEIVESRPNARMQLKSPTTSPTLVRS  211 (220)
Q Consensus       178 ~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~~  211 (220)
                      .+.  ...|.=++-=       -|||..-.|-+-
T Consensus       156 ~l~--~~~I~~I~GI-------lnGT~nyilt~m  180 (327)
T 3do5_A          156 YLA--LCEIESVKGI-------FNGTCNYILSRM  180 (327)
T ss_dssp             TTT--TSCEEEEEEE-------CCHHHHHHHHHH
T ss_pred             Hhh--CCCccEEEEE-------ECCCcCcchhhc
Confidence            333  2455444431       278888766554

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=99.49  E-value=2.6e-14  Score=127.80  Aligned_cols=162  Identities=20%  Similarity=0.175  Sum_probs=118.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc------CCcEEEEEEecCCC--C--cchhhhhcCCCCCC-cc--ccCCHHHHHhcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA------RGMEVAGAIDSHSV--G--EDIGMVCDMEQPLE-IP--VMSDLTMVLGSI  101 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~------~~~eLvg~vd~~~~--g--~d~g~l~g~~~~~g-v~--v~~dl~~~l~~~  101 (220)
                      ++||+|+|+ |+||+.+++.+.+.      ++++|++++|++..  .  -|...+.......+ ++  .+ |+++++.. 
T Consensus         4 ~irVgIiG~-G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~-   80 (325)
T 3ing_A            4 EIRIILMGT-GNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG-   80 (325)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT-
T ss_pred             eEEEEEEcC-cHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC-
Confidence            589999996 99999999999876      79999999997421  1  12222211000011 11  23 66777764 


Q ss_pred             ccCCCccEEEEccCchhH----HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHH
Q 027650          102 SQSKARAVVIDFTDASTV----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (220)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~----~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~  177 (220)
                         .++|||||+|++..+    ++++..|+++|+|||++.+++..++.++|.++|+++|+.+++-.++.-|.-++..+-.
T Consensus        81 ---~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~giPii~~l~~  157 (325)
T 3ing_A           81 ---EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGVPLFSVLDY  157 (325)
T ss_dssp             ---SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHHHH
T ss_pred             ---CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccCHHHHHHHH
Confidence               589999999987543    6899999999999999888776788999999999999999999999888876665554


Q ss_pred             HhcCCCCCeEEEeccCCCCCCCCchhhHHHHHHh
Q 027650          178 SASFHYKNVEIVESRPNARMQLKSPTTSPTLVRS  211 (220)
Q Consensus       178 ~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~~  211 (220)
                      .+.  ...|.=++-       .-|||..-.|-+-
T Consensus       158 ~l~--g~~I~~i~G-------i~nGT~nyil~~m  182 (325)
T 3ing_A          158 SIL--PSKVKRFRG-------IVSSTINYVIRNM  182 (325)
T ss_dssp             TCT--TCCEEEEEE-------ECCHHHHHHHHHH
T ss_pred             Hhh--CCCeeEEEE-------EEEeeeeEEeecc
Confidence            443  356665654       3578887655444

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=99.48  E-value=1.2e-13  Score=128.16  Aligned_cols=156  Identities=14%  Similarity=0.159  Sum_probs=117.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc---------CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA---------RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---------~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (220)
                      ++||+|+|+ |.||+.+++.+.++         ++++|++++|++.  .....+.     .+..+++|++++++.    .
T Consensus        10 ~irIgIIG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~--~~~~~~~-----~~~~~~~d~~ell~d----~   77 (444)
T 3mtj_A           10 PIHVGLLGL-GTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNL--DKAEALA-----GGLPLTTNPFDVVDD----P   77 (444)
T ss_dssp             CEEEEEECC-HHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCH--HHHHHHH-----TTCCEESCTHHHHTC----T
T ss_pred             cccEEEECC-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCH--HHhhhhc-----ccCcccCCHHHHhcC----C
Confidence            479999996 99999999887642         7999999999752  1222222     145679999999974    5


Q ss_pred             CccEEEEccCc-hhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCC
Q 027650          106 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYK  184 (220)
Q Consensus       106 ~~DVVIDfT~p-~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~  184 (220)
                      ++|+|+++|++ +.+.+++..|+++|+|||+++++++.++.++|.++|+++|+.+.+-.+..-|.-++..+-..+..  .
T Consensus        78 diDvVve~tp~~~~h~~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~giPii~~LrelL~~--~  155 (444)
T 3mtj_A           78 EIDIVVELIGGLEPARELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGGIPIIKALREGLTA--N  155 (444)
T ss_dssp             TCCEEEECCCSSTTHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCHHHHHHTTTTT--S
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCChHHHHHHHHHHhC--C
Confidence            89999999985 89999999999999999999998888899999999999999998776666665555544433332  2


Q ss_pred             CeEEEeccCCCCCCCCchhhHHHHHHh
Q 027650          185 NVEIVESRPNARMQLKSPTTSPTLVRS  211 (220)
Q Consensus       185 diEIiE~HH~~K~DaPSGTA~~~~~~~  211 (220)
                      .|.=++-       .-|||..-.|-+-
T Consensus       156 ~Ig~I~G-------IlnGT~nyilt~m  175 (444)
T 3mtj_A          156 RIEWLAG-------IINGTSNFILSEM  175 (444)
T ss_dssp             CEEEEEE-------ECCHHHHHHHHHH
T ss_pred             CCceEEE-------EEcCCcccccccC
Confidence            3432222       1289998766544

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=99.40  E-value=8.7e-13  Score=114.27  Aligned_cols=128  Identities=16%  Similarity=0.072  Sum_probs=101.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -|||+++|+ |.||+.+++.   . ++||+++++ ++.|    ++       |+.+++|++++++      ++|+||+++
T Consensus        12 ~~rV~i~G~-GaIG~~v~~~---~-~leLv~v~~-~k~g----el-------gv~a~~d~d~lla------~pD~VVe~A   68 (253)
T 1j5p_A           12 HMTVLIIGM-GNIGKKLVEL---G-NFEKIYAYD-RISK----DI-------PGVVRLDEFQVPS------DVSTVVECA   68 (253)
T ss_dssp             CCEEEEECC-SHHHHHHHHH---S-CCSEEEEEC-SSCC----CC-------SSSEECSSCCCCT------TCCEEEECS
T ss_pred             cceEEEECc-CHHHHHHHhc---C-CcEEEEEEe-cccc----cc-------CceeeCCHHHHhh------CCCEEEECC
Confidence            479999996 9999999997   4 999999998 3322    22       5677889999985      799999999


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCCCC--CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTtG~--~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                      .++.+.+++..+|++|+++|+..+|.  +++..++|+++|+++|..+++.++--.|...+ .+++   .....|.+.
T Consensus        69 ~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~GlD~l-~aa~---g~l~~V~~~  141 (253)
T 1j5p_A           69 SPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLDVL-SSIK---DFVKNVRIE  141 (253)
T ss_dssp             CHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCCHHHH-HHHG---GGEEEEEEE
T ss_pred             CHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccchhHH-HHhc---CCccEEEEE
Confidence            99999999999999999999988873  77778999999999999998876655554333 2332   333455554

>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*

Probab=99.40  E-value=1.6e-12  Score=116.77  Aligned_cols=123  Identities=15%  Similarity=0.219  Sum_probs=99.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHH--HHhcCCcEEEEEEecCCCC--cchhhhhcCCCCCCccccCCHHHHHhccccCC-Ccc
Q 027650           34 SNIKVIINGAVKEIGRAAVIA--VTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK-ARA  108 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~--i~~~~~~eLvg~vd~~~~g--~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~-~~D  108 (220)
                      ..+||.|.|++|++++.+++.  +.+.++.++|+.+++...|  +++.  .|.. ..|+|+|.+++++...    . ++|
T Consensus         9 ~~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~--~G~~-~~Gvpvy~sv~ea~~~----~p~~D   81 (334)
T 3mwd_B            9 RHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFY--WGHK-EILIPVFKNMADAMRK----HPEVD   81 (334)
T ss_dssp             TTCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEE--ETTE-EEEEEEESSHHHHHHH----CTTCC
T ss_pred             CCCeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCccceEe--ccCc-cCCceeeCCHHHHhhc----CCCCc
Confidence            347999999999999988887  6778999999999986543  4442  2332 4689999999998763    2 589


Q ss_pred             EEEEccCchhHHHHHHHHHH-CCCcEEEe-CCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          109 VVIDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~-~G~~vVig-TtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      ++|+|++|..+.+.+..++. +|++.|+. |+|+.+++.++|.++|++.|+.++ -||
T Consensus        82 laVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rli-GPN  138 (334)
T 3mwd_B           82 VLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTII-GPA  138 (334)
T ss_dssp             EEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEE-CSS
T ss_pred             EEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE-ccC
Confidence            99999999998887777776 99987777 889999999999999999998554 466

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=99.39  E-value=8.2e-13  Score=118.10  Aligned_cols=161  Identities=17%  Similarity=0.108  Sum_probs=111.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC-------CcEEEEEEecCCC--Cc--chhhhhcCCCCCCcc-ccC---CHHHHHh
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR-------GMEVAGAIDSHSV--GE--DIGMVCDMEQPLEIP-VMS---DLTMVLG   99 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-------~~eLvg~vd~~~~--g~--d~g~l~g~~~~~gv~-v~~---dl~~~l~   99 (220)
                      ++||+|+|+ |.||+.+++.+.+.+       +++|++++|++..  ..  +..++.......+++ +++   |+++++ 
T Consensus         6 ~irvgIiG~-G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll-   83 (331)
T 3c8m_A            6 TINLSIFGL-GNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL-   83 (331)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH-
T ss_pred             EEeEEEEec-CHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh-
Confidence            489999997 999999999998776       6999999997431  11  111111100012343 566   999999 


Q ss_pred             ccccCCCccEEEEccCch----hHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650          100 SISQSKARAVVIDFTDAS----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (220)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~----~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~  175 (220)
                      .    .++|+|+++|++.    .+.+++..|+++|+|||+....+..++.++|.++|+++|+.+++..++.-|.-++..+
T Consensus        84 ~----~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~giPii~~l  159 (331)
T 3c8m_A           84 A----RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAGGVPLFSFI  159 (331)
T ss_dssp             H----SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHH
T ss_pred             C----CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeecccccHHHHHH
Confidence            4    5899999999875    7889999999999999986443335788999999999999999887777775455544


Q ss_pred             HHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHHH
Q 027650          176 AISASFHYKNVEIVESRPNARMQLKSPTTSPTLVR  210 (220)
Q Consensus       176 a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~~  210 (220)
                      -..+..  ..|.-++-       .-+||..-.+-+
T Consensus       160 ~~~l~g--~~I~~I~G-------I~nGT~nyil~~  185 (331)
T 3c8m_A          160 DYSVLP--SRIKKFRG-------IVSLTINYFIRE  185 (331)
T ss_dssp             HHHSTT--CCCCEEEE-------ECCHHHHHHHHH
T ss_pred             HHHhhc--CcccEEEE-------EEeccceeEecc
Confidence            433432  23333332       236777754433

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=99.28  E-value=1.2e-11  Score=111.92  Aligned_cols=125  Identities=15%  Similarity=0.142  Sum_probs=93.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcC---CcEEEEEEecCCCCcchhhhhcCCCCC-CccccCCHHHHHhcc--------
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKAR---GMEVAGAIDSHSVGEDIGMVCDMEQPL-EIPVMSDLTMVLGSI--------  101 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~---~~eLvg~vd~~~~g~d~g~l~g~~~~~-gv~v~~dl~~~l~~~--------  101 (220)
                      .++||+|+|+ |.||+.+++.+.+.+   +++|++++|++.  +   .+.   ..+ |++.++++++++...        
T Consensus         3 k~i~vgIiG~-G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~---~~~---~~~~gi~~~~~~~e~l~~~~~~~~did   73 (358)
T 1ebf_A            3 KVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAER--S---LIS---KDFSPLNVGSDWKAALAASTTKTLPLD   73 (358)
T ss_dssp             SEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSB--E---EEC---SSCSCCSCTTCHHHHHHTCCCBCCCHH
T ss_pred             ceEEEEEEec-CHHHHHHHHHHHhcCCCCCEEEEEEEECCh--h---hhc---cccCCCCccccHHHHHhcccCCCCCHH
Confidence            4689999997 999999999998876   799999999632  1   111   122 555566777766520        


Q ss_pred             ------ccCCCccEEEEccCchhHHHHHHHHHHCCCcEEE--eCC-CCCHHHHHHHHHHhhhcCceEEEcCCCcHH
Q 027650          102 ------SQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV--YVP-HIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (220)
Q Consensus       102 ------~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi--gTt-G~~~e~~~~L~~aA~~~~v~vviapNfS~G  168 (220)
                            .....+|||||+|....+.+....|+++|+|||+  .+| ..+.++.++|. +|+++|+.+.+-.+..-|
T Consensus        74 ~v~e~~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~~~~Ea~vg~g  148 (358)
T 1ebf_A           74 DLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGFVYHEATVGAG  148 (358)
T ss_dssp             HHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCCEECGGGTTTT
T ss_pred             HHHHHhhhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCEEEEccccccC
Confidence                  0001238999999877777777899999999998  445 56778899999 999999999887665555

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=99.25  E-value=2.2e-11  Score=108.82  Aligned_cols=96  Identities=21%  Similarity=0.240  Sum_probs=76.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCC------C------CCCccccCCHHHHHh
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME------Q------PLEIPVMSDLTMVLG   99 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~---g~~------~------~~gv~v~~dl~~~l~   99 (220)
                      |+||||+|+ |+||+.+++.+.++|+++|+++.|++  .+.++.++   |..      .      ..++.++.|+++++.
T Consensus         2 ~irVgIiG~-G~iG~~~~r~l~~~~~~elvav~d~~--~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~   78 (334)
T 2czc_A            2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTK--PDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE   78 (334)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESS--CSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             CcEEEEEeE-hHHHHHHHHHHhcCCCCEEEEEEcCC--HHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhcc
Confidence            689999997 99999999999999999999999964  22232222   100      0      012356789999885


Q ss_pred             ccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                            ++|+|+++|++..+.+.+..++++|++|++++|.
T Consensus        79 ------~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi~sap~  112 (334)
T 2czc_A           79 ------KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGE  112 (334)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTS
T ss_pred             ------CCCEEEECCCccccHHHHHHHHHcCCceEeeccc
Confidence                  7999999998888899999999999999998764

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=99.24  E-value=1e-10  Score=103.66  Aligned_cols=113  Identities=12%  Similarity=0.149  Sum_probs=94.3

Q ss_pred             eEEEE-cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           37 KVIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        37 kV~V~-Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      +++|+ |++|++|+.+++.+.+. ++++++.+++...|+.         -.|+++|.+++++.++    ..+|++|.|++
T Consensus        15 siaVV~Gasg~~G~~~~~~l~~~-G~~~v~~VnP~~~g~~---------i~G~~vy~sl~el~~~----~~vD~avI~vP   80 (305)
T 2fp4_A           15 TKVICQGFTGKQGTFHSQQALEY-GTNLVGGTTPGKGGKT---------HLGLPVFNTVKEAKEQ----TGATASVIYVP   80 (305)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECCC
T ss_pred             cEEEEECCCCCHHHHHHHHHHHC-CCcEEEEeCCCcCcce---------ECCeeeechHHHhhhc----CCCCEEEEecC
Confidence            46777 99999999999988764 7888888887543322         2478999999999753    37999999999


Q ss_pred             chhHHHHHHHHHHCCCcE-EEeCCCCCHHHHHHHHHHhhhc-CceEEEcCC
Q 027650          116 ASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKA-SMGCLIAPT  164 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~v-VigTtG~~~e~~~~L~~aA~~~-~v~vviapN  164 (220)
                      |+.+.+.++.|++.|++. |+-++|++.++..++.++++++ |+.+ +.||
T Consensus        81 ~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~l-iGPn  130 (305)
T 2fp4_A           81 PPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRL-IGPN  130 (305)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEE-ECSS
T ss_pred             HHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEE-EeCC
Confidence            999999999999999998 6778899988788999999998 8884 6677

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=99.13  E-value=4.9e-11  Score=106.91  Aligned_cols=123  Identities=13%  Similarity=0.111  Sum_probs=92.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC--------CcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR--------GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~--------~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      ++||+|+|+ |.||+.+++.+.+.+        +++|++++|++.. + ...+ +     ...+++|+++++       +
T Consensus         3 ~irvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~-~-~~~~-~-----~~~~~~d~~~ll-------~   66 (332)
T 2ejw_A            3 ALKIALLGG-GTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR-K-PRAI-P-----QELLRAEPFDLL-------E   66 (332)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT-S-CCSS-C-----GGGEESSCCCCT-------T
T ss_pred             eeEEEEEcC-CHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH-H-hhcc-C-----cccccCCHHHHh-------C
Confidence            589999997 999999999998887        7999999997531 1 1111 0     123577888876       4


Q ss_pred             ccEEEEccCch-hHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650          107 RAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (220)
Q Consensus       107 ~DVVIDfT~p~-~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~  175 (220)
                      +|+|+++|... .+.++++.|+++|+|||+.......++.++|.++|+++  .+++..++.-|+-++..+
T Consensus        67 iDvVve~t~~~~~a~~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~--~~~~Ea~vg~giPii~~l  134 (332)
T 2ejw_A           67 ADLVVEAMGGVEAPLRLVLPALEAGIPLITANKALLAEAWESLRPFAEEG--LIYHEASVMAGTPALSFL  134 (332)
T ss_dssp             CSEEEECCCCSHHHHHHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT--CEECGGGTTTTSSSHHHH
T ss_pred             CCEEEECCCCcHHHHHHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC--CeEEEEEcccCCHHHHHH
Confidence            89999999765 45789999999999999854333347889999999986  778877777774444433

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=99.11  E-value=2.9e-10  Score=102.03  Aligned_cols=94  Identities=16%  Similarity=0.215  Sum_probs=70.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC--------------CCCCccccCCHHHHHhc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--------------QPLEIPVMSDLTMVLGS  100 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~--------------~~~gv~v~~dl~~~l~~  100 (220)
                      |+||||+|+ |+||+.+++++.++|++||+++.|+.. +. ...++...              ...++++.+++++++. 
T Consensus         1 ~ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~~-~~-~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~-   76 (340)
T 1b7g_O            1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSP-NY-EAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK-   76 (340)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSC-SH-HHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH-
T ss_pred             CeEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCCh-HH-HHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc-
Confidence            689999999 999999999999999999999998642 11 11111000              0223445556666654 


Q ss_pred             cccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                           ++|+|+++|++....+++..++++|+++|.-.
T Consensus        77 -----~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~s  108 (340)
T 1b7g_O           77 -----TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQG  108 (340)
T ss_dssp             -----HCSEEEECCSTTHHHHHHHHHHHTTCEEEECT
T ss_pred             -----CCCEEEECCCCchhHHHHHHHHHcCCeEEEeC
Confidence                 69999999999999999999999999988643

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=99.05  E-value=5e-10  Score=100.34  Aligned_cols=96  Identities=20%  Similarity=0.228  Sum_probs=73.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC---------------CCCCccccCCHHHHHh
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME---------------QPLEIPVMSDLTMVLG   99 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~---------------~~~gv~v~~dl~~~l~   99 (220)
                      |+||+|+|+ |+||+.+++++.++|+++|+++.|...  .....+++..               ...++.+..++++++.
T Consensus         1 mikVgIiGa-G~iG~~l~r~L~~~~~~elvav~d~~~--~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~   77 (337)
T 1cf2_P            1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRP--DFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD   77 (337)
T ss_dssp             CEEEEEECC-STTHHHHHHHHHTSSSEEEEEEEESSC--SHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH
T ss_pred             CeEEEEEeE-CHHHHHHHHHHHcCCCcEEEEEEcCCh--hHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc
Confidence            689999999 999999999999999999999998631  1111111100               0113344456777775


Q ss_pred             ccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                            ++|+|+++|++..+.+.+..++++|++||+.++.
T Consensus        78 ------~vDvV~~atp~~~~~~~a~~~l~aG~~VId~sp~  111 (337)
T 1cf2_P           78 ------EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE  111 (337)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCCEEECTTS
T ss_pred             ------CCCEEEECCCchhhHHHHHHHHHcCCEEEEecCC
Confidence                  7999999999999999999999999999988876

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=99.02  E-value=1.8e-10  Score=103.34  Aligned_cols=124  Identities=22%  Similarity=0.257  Sum_probs=86.0

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc--cCCHHHHHhccccCCCccEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVV  110 (220)
                      +.+|||+|+|| |++|+.+++.+.+..++.+   +|..  .+.+..+........+.+  .+++.+++.      ++|+|
T Consensus        14 g~~mkilvlGa-G~vG~~~~~~L~~~~~v~~---~~~~--~~~~~~~~~~~~~~~~d~~d~~~l~~~~~------~~DvV   81 (365)
T 3abi_A           14 GRHMKVLILGA-GNIGRAIAWDLKDEFDVYI---GDVN--NENLEKVKEFATPLKVDASNFDKLVEVMK------EFELV   81 (365)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHTTTSEEEE---EESC--HHHHHHHTTTSEEEECCTTCHHHHHHHHT------TCSEE
T ss_pred             CCccEEEEECC-CHHHHHHHHHHhcCCCeEE---EEcC--HHHHHHHhccCCcEEEecCCHHHHHHHHh------CCCEE
Confidence            45689999998 9999999999876554433   3332  112222211000111111  233455554      79999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~  170 (220)
                      |.+++|..+...++.|+++|+|+|- .+ +..++..+|.+.|+++|+.++..-+|.+|+.
T Consensus        82 i~~~p~~~~~~v~~~~~~~g~~yvD-~s-~~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~  139 (365)
T 3abi_A           82 IGALPGFLGFKSIKAAIKSKVDMVD-VS-FMPENPLELRDEAEKAQVTIVFDAGFAPGLS  139 (365)
T ss_dssp             EECCCGGGHHHHHHHHHHHTCEEEE-CC-CCSSCGGGGHHHHHHTTCEEECCCBTTTBHH
T ss_pred             EEecCCcccchHHHHHHhcCcceEe-ee-ccchhhhhhhhhhccCCceeeecCCCCCchH
Confidence            9988898889999999999999995 33 4445667899999999999999999999984

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=99.02  E-value=4.7e-09  Score=82.93  Aligned_cols=114  Identities=16%  Similarity=0.084  Sum_probs=89.6

Q ss_pred             CceEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..+|+|+|++   |++|..+++.+.+ .++++.. +++.  +   .+      -.|+++|.+++++.+      .+|++|
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~-~G~~v~~-Vnp~--~---~~------i~G~~~y~sl~~l~~------~vDlvv   82 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLE-HGYDVYP-VNPK--Y---EE------VLGRKCYPSVLDIPD------KIEVVD   82 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHH-TTCEEEE-ECTT--C---SE------ETTEECBSSGGGCSS------CCSEEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHH-CCCEEEE-ECCC--C---Ce------ECCeeccCCHHHcCC------CCCEEE
Confidence            3479999997   8999999998876 4777433 3443  2   12      237889999998864      799999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                      .+++++.+.+.+..|.+.|++.++-.+|..   .+++.++++++|+++ +-|| ++|+...
T Consensus        83 i~vp~~~~~~vv~~~~~~gi~~i~~~~g~~---~~~l~~~a~~~Gi~v-vGpn-c~gv~~~  138 (144)
T 2d59_A           83 LFVKPKLTMEYVEQAIKKGAKVVWFQYNTY---NREASKKADEAGLII-VANR-CMMREHE  138 (144)
T ss_dssp             ECSCHHHHHHHHHHHHHHTCSEEEECTTCC---CHHHHHHHHHTTCEE-EESC-CHHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEECCCch---HHHHHHHHHHcCCEE-EcCC-chhhcch
Confidence            899999999999999999999888888875   356888999999995 4588 8888543

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=99.02  E-value=9e-10  Score=99.41  Aligned_cols=116  Identities=13%  Similarity=0.137  Sum_probs=93.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHH---Hhc-CCcEEEEEEecCCCCcchhhhh-cCCCCCCccccCCHHHHHhccccCCCccE
Q 027650           35 NIKVIINGAVKEIGRAAVIAV---TKA-RGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i---~~~-~~~eLvg~vd~~~~g~d~g~l~-g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      .-|++|+|- |.||+..++.+   ... ++.++||++ ++..|+|++++. |.  ..|++++.|++++++.     ++|+
T Consensus        22 ~~~~vi~~~-g~~g~~~aKta~gllr~~~~~~iVgvi-~~~~Gkd~ge~~~g~--~~gipv~~d~~~al~~-----~~d~   92 (350)
T 2g0t_A           22 GTPAAIVAW-GQLGTAHAKTTYGLLRHSRLFKPVCVV-AEHEGKMASDFVKPV--RYDVPVVSSVEKAKEM-----GAEV   92 (350)
T ss_dssp             TEEEEEECT-TTTTSGGGHHHHHHHHHCSSEEEEEEE-SSCTTCBGGGTCC-C--CSCCBEESSHHHHHHT-----TCCE
T ss_pred             CCCEEEEeC-CCCChHHHHHHHHHHhhCCCCeEEEEe-ecCCCCcHHHhhCCC--CCCceeeCCHHHHHhc-----CCCE
Confidence            358999985 99999888854   555 779999999 988999999998 53  5799999999999973     7999


Q ss_pred             EEEcc------CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          110 VIDFT------DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       110 VIDfT------~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      +|..+      .|+.+.+.+..|+++|++||+|-..+ ..+..+|.++|+++|+.++
T Consensus        93 lvig~a~~gg~l~~~~~~~I~~Al~~G~nVvsglh~~-l~~~pel~~~A~~~Gv~i~  148 (350)
T 2g0t_A           93 LIIGVSNPGGYLEEQIATLVKKALSLGMDVISGLHFK-ISQQTEFLKIAHENGTRII  148 (350)
T ss_dssp             EEECCCSCCHHHHHHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTCCEE
T ss_pred             EEEEecCCCCCCCHHHHHHHHHHHHcCCcEEeCChhh-hhCCHHHHHHHHHCCCEEE
Confidence            88654      24566789999999999999987654 3344668889999888777

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=99.02  E-value=1.2e-09  Score=96.98  Aligned_cols=99  Identities=20%  Similarity=0.254  Sum_probs=76.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHh-cCCcEEEEEEecCCC--CcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTK-ARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~-~~~~eLvg~vd~~~~--g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DV  109 (220)
                      .++||+|+|+ |+||+.+++.+.+ .|++++++++|++..  ++...+      .+|++ .+++++++++.- ...++|+
T Consensus         3 ~~irVaIIG~-G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~------~~g~~~~~~~~e~ll~~~-~~~~iDv   74 (312)
T 1nvm_B            3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ------RMGVTTTYAGVEGLIKLP-EFADIDF   74 (312)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH------HTTCCEESSHHHHHHHSG-GGGGEEE
T ss_pred             CCCEEEEEcC-cHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHH------HcCCCcccCCHHHHHhcc-CCCCCcE
Confidence            4689999995 9999999999966 899999999997531  233322      33444 356788887510 0026899


Q ss_pred             EEEccCchhHHHHHHHHHHC--CCcEEEeCCCC
Q 027650          110 VIDFTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~--G~~vVigTtG~  140 (220)
                      |+++|++..+.+++..++++  |++|++.+|.+
T Consensus        75 V~~atp~~~h~~~a~~al~a~~Gk~Vi~ekp~~  107 (312)
T 1nvm_B           75 VFDATSASAHVQNEALLRQAKPGIRLIDLTPAA  107 (312)
T ss_dssp             EEECSCHHHHHHHHHHHHHHCTTCEEEECSTTC
T ss_pred             EEECCChHHHHHHHHHHHHhCCCCEEEEcCccc
Confidence            99999999999999999999  99999999853

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=99.01  E-value=4.2e-09  Score=82.84  Aligned_cols=112  Identities=13%  Similarity=0.159  Sum_probs=86.4

Q ss_pred             CceEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..+|+|+|++   |+||+.+++.+.+ .+++ +..+++.  ++   +      -.|+++|.+++++.+      .+|++|
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~-~G~~-V~~vnp~--~~---~------i~G~~~~~s~~el~~------~vDlvi   74 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLS-KGFE-VLPVNPN--YD---E------IEGLKCYRSVRELPK------DVDVIV   74 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHH-TTCE-EEEECTT--CS---E------ETTEECBSSGGGSCT------TCCEEE
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHH-CCCE-EEEeCCC--CC---e------ECCeeecCCHHHhCC------CCCEEE
Confidence            3579999976   9999999999876 4788 3345553  11   1      237889999998865      799999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~  170 (220)
                      .+.+++.+.+.+..+++.|+..++-.++..   .++|.+++++.|+.+ +-|| ++|+.
T Consensus        75 i~vp~~~v~~v~~~~~~~g~~~i~~~~~~~---~~~l~~~a~~~Gi~~-igpn-c~g~~  128 (138)
T 1y81_A           75 FVVPPKVGLQVAKEAVEAGFKKLWFQPGAE---SEEIRRFLEKAGVEY-SFGR-CIMVE  128 (138)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCEEEECTTSC---CHHHHHHHHHHTCEE-ECSC-CHHHH
T ss_pred             EEeCHHHHHHHHHHHHHcCCCEEEEcCccH---HHHHHHHHHHCCCEE-EcCC-cceEE
Confidence            888988889999999999998777666432   356888889999984 5688 88874

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=98.92  E-value=1.8e-09  Score=97.40  Aligned_cols=114  Identities=13%  Similarity=0.075  Sum_probs=96.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHH---HhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAV---TKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i---~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -|++|++ .|.+|+..+|.+   ...++.++||++|++..|+|++++.|.  ..|+|++.|++++++.     ++|++|.
T Consensus         8 ~~~vi~~-~g~~~~~~aKta~gl~r~~~~~iVgvid~~~~G~d~ge~~g~--~~gipi~~~l~~al~~-----~~d~lvi   79 (349)
T 2obn_A            8 QRVAILL-HEGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGI--YRYVPIVKSVEAALEY-----KPQVLVI   79 (349)
T ss_dssp             CCEEEEC-TTTSSSSSCHHHHHHHHHCCSCEEEEECGGGTTSCHHHHHCC--CSCCCEESSHHHHGGG-----CCSEEEE
T ss_pred             CcEEEEe-CCCCCcHHHHHhHHhhhcCCCcEEEEEeCCCCCCcHHHhcCC--cCCCCccCCHHHHHhC-----CCCEEEE
Confidence            3799997 499998888776   777889999999998899999999996  6799999999999973     8999887


Q ss_pred             cc------CchhHHHHHHHHHHCCCcEEEeCCC-CCHHHHHHHHHHhhhcCceEE
Q 027650          113 FT------DASTVYDNVKQATAFGMRSVVYVPH-IQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       113 fT------~p~~~~~~~~~al~~G~~vVigTtG-~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      -+      .|+.+.+.+..|+++|++||.|--. ++++  .+|.++|++ |+.++
T Consensus        80 g~a~~gG~l~~~~~~~i~~Al~~G~~Vvsglh~~l~~~--pel~~~A~~-g~~i~  131 (349)
T 2obn_A           80 GIAPKGGGIPDDYWIELKTALQAGMSLVNGLHTPLANI--PDLNALLQP-GQLIW  131 (349)
T ss_dssp             CCCCCCC-SCGGGHHHHHHHHHTTCEEEECSSSCCTTC--HHHHHHCCT-TCCEE
T ss_pred             EecCCCCCCCHHHHHHHHHHHHcCCcEEeCccchhhCC--HHHHHHHHc-CCEEE
Confidence            65      3678889999999999999998663 3322  348999998 88888

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.91  E-value=6.8e-09  Score=82.16  Aligned_cols=112  Identities=12%  Similarity=0.126  Sum_probs=84.3

Q ss_pred             ceEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .+|+|+|++   |+||..+++.+.+. +++ +..+++...|..         -.|+++|.+++++.+      .+|+++.
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~-G~~-v~~vnp~~~g~~---------i~G~~~~~sl~el~~------~~Dlvii   76 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQ-GYH-VIPVSPKVAGKT---------LLGQQGYATLADVPE------KVDMVDV   76 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHH-TCC-EEEECSSSTTSE---------ETTEECCSSTTTCSS------CCSEEEC
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHC-CCE-EEEeCCcccccc---------cCCeeccCCHHHcCC------CCCEEEE
Confidence            479999987   89999999998764 677 444566432222         237788999998764      7999998


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      +++++.+.+.+..+++.|+..|+-.+|..   .+++.+++++.|+.++ -|| ++|+
T Consensus        77 ~vp~~~v~~v~~~~~~~g~~~i~i~~~~~---~~~l~~~a~~~Gi~~i-gpn-c~g~  128 (145)
T 2duw_A           77 FRNSEAAWGVAQEAIAIGAKTLWLQLGVI---NEQAAVLAREAGLSVV-MDR-CPAI  128 (145)
T ss_dssp             CSCSTHHHHHHHHHHHHTCCEEECCTTCC---CHHHHHHHHTTTCEEE-CSC-CHHH
T ss_pred             EeCHHHHHHHHHHHHHcCCCEEEEcCChH---HHHHHHHHHHcCCEEE-cCC-eeeE
Confidence            88888888999999999966554445432   3568888999898865 488 8888

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.91  E-value=7.3e-09  Score=81.59  Aligned_cols=114  Identities=11%  Similarity=0.075  Sum_probs=88.7

Q ss_pred             ceEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -+|+|+|++   |+||..+++.+.+ .+++ +..+++...+.   +      -.|+++|.+++++-+      .+|+++.
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~-~G~~-v~~vnp~~~~~---~------i~G~~~~~sl~el~~------~vDlavi   76 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLRE-QGYR-VLPVNPRFQGE---E------LFGEEAVASLLDLKE------PVDILDV   76 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHH-TTCE-EEEECGGGTTS---E------ETTEECBSSGGGCCS------CCSEEEE
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHH-CCCE-EEEeCCCcccC---c------CCCEEecCCHHHCCC------CCCEEEE
Confidence            479999998   8999999999876 4787 33345532122   1      237889999998764      7999998


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l  171 (220)
                      |.+++.+.+.+..|.+.|+..|+-.+|+..   +++.++|+++|+.++- || ++|+..
T Consensus        77 ~vp~~~~~~v~~~~~~~gi~~i~~~~g~~~---~~~~~~a~~~Gir~vg-pn-c~g~~~  130 (140)
T 1iuk_A           77 FRPPSALMDHLPEVLALRPGLVWLQSGIRH---PEFEKALKEAGIPVVA-DR-CLMVEH  130 (140)
T ss_dssp             CSCHHHHTTTHHHHHHHCCSCEEECTTCCC---HHHHHHHHHTTCCEEE-SC-CHHHHH
T ss_pred             EeCHHHHHHHHHHHHHcCCCEEEEcCCcCH---HHHHHHHHHcCCEEEc-CC-ccceEC
Confidence            999988889999999999988777787753   5688889999998665 88 888854

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.89  E-value=5.9e-09  Score=95.13  Aligned_cols=149  Identities=9%  Similarity=0.120  Sum_probs=97.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC-Ccch-hhhhc-----CC-CCCCccccCCHHHHHhccccCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV-GEDI-GMVCD-----ME-QPLEIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~-g~d~-g~l~g-----~~-~~~gv~v~~dl~~~l~~~~~~~  105 (220)
                      |+||+|+|+ |++|+.+++.+.+.+++ ..+.+++++.. .+.+ .++..     .. -..++.-.+++++++..    .
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~----~   75 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE----V   75 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH----H
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh----h
Confidence            679999998 99999999999988876 45556675320 1111 11110     00 00111113456677762    2


Q ss_pred             CccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCC--------HHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHH
Q 027650          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ--------LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~--------~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~  177 (220)
                      ++|+||.++.|....+.+..|+++|+++|. ++++.        -.+..++.+.++++|+.++..++|..|+.-+.  +.
T Consensus        76 ~~DvVin~ag~~~~~~v~~a~l~~g~~vvD-~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G~~PG~~~l~--a~  152 (405)
T 4ina_A           76 KPQIVLNIALPYQDLTIMEACLRTGVPYLD-TANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGFDPGVTNVF--CA  152 (405)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHHTCCEEE-SSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCBTTTBHHHHH--HH
T ss_pred             CCCEEEECCCcccChHHHHHHHHhCCCEEE-ecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCCCCccHHHHH--HH
Confidence            489999999888888999999999999985 43321        12345788899999999999999999985332  22


Q ss_pred             HhcC-CCCCeEEEec
Q 027650          178 SASF-HYKNVEIVES  191 (220)
Q Consensus       178 ~~~~-~~~diEIiE~  191 (220)
                      .+.+ .+.+++.++.
T Consensus       153 ~~~~~~~~~i~~i~i  167 (405)
T 4ina_A          153 YAQKHYFDEIHEIDI  167 (405)
T ss_dssp             HHHHHTCSEEEEEEE
T ss_pred             HHHHhccCcccEEEE
Confidence            2222 3456666664

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=98.89  E-value=8.4e-09  Score=92.63  Aligned_cols=99  Identities=15%  Similarity=0.139  Sum_probs=70.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCC-------CCCccccC-CHHHHHhccccC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQ-------PLEIPVMS-DLTMVLGSISQS  104 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~g~l~g~~~-------~~gv~v~~-dl~~~l~~~~~~  104 (220)
                      +|+||+|+||+|++|+.+++.+.++|+++|+++.+ +...|+...+..+.-.       ...+.+.+ +.++ +.     
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-----   76 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HK-----   76 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GT-----
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hc-----
Confidence            46899999999999999999999999999999984 3344555543332100       01122211 3333 32     


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                       ++|+|+.+++...+.+.+..++++|+++|..+..
T Consensus        77 -~vDvVf~atp~~~s~~~a~~~~~aG~~VId~s~~  110 (350)
T 2ep5_A           77 -DVDVVLSALPNELAESIELELVKNGKIVVSNASP  110 (350)
T ss_dssp             -TCSEEEECCCHHHHHHHHHHHHHTTCEEEECSST
T ss_pred             -CCCEEEECCChHHHHHHHHHHHHCCCEEEECCcc
Confidence             7999996666677789999999999998876543

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=98.88  E-value=8.7e-09  Score=92.49  Aligned_cols=97  Identities=12%  Similarity=0.049  Sum_probs=71.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +|+||+|+|++|++|+.+++.+.++|++||+++.++...|+...+..+. .....+. +.++++ +.      ++|+|+.
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~-~~------~vDvV~~   74 (345)
T 2ozp_A            3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK-LE------PADILVL   74 (345)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG-CC------CCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH-hc------CCCEEEE
Confidence            4689999999999999999999999999999998865566666543321 0001222 234443 32      7999997


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      ++....+.+.+..++++|+++|.-+.
T Consensus        75 a~g~~~s~~~a~~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           75 ALPHGVFAREFDRYSALAPVLVDLSA  100 (345)
T ss_dssp             CCCTTHHHHTHHHHHTTCSEEEECSS
T ss_pred             cCCcHHHHHHHHHHHHCCCEEEEcCc
Confidence            77667778999999999999886544

>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}

Probab=98.84  E-value=1.1e-08  Score=101.14  Aligned_cols=123  Identities=15%  Similarity=0.209  Sum_probs=95.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHh-----cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTK-----ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~-----~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      ...||.|.|++||   .+.+++..     .++.++|+.++|...|.+...+.|.. ..|+|+|.+++++...   ..++|
T Consensus       495 ~~trviV~G~tg~---~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~~~G~~-~~Gvp~y~sv~ea~~~---~p~~D  567 (829)
T 3pff_A          495 RHTKAIVWGMQTR---AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHK-EILIPVFKNMADAMRK---HPEVD  567 (829)
T ss_dssp             TTCCEEEESCCHH---HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTE-EEEEEEESSHHHHHHH---CTTCC
T ss_pred             CCCeEEEECCcHH---HHHHHHHhcccccCCCCcEEEEEcCCCCCccceEEecCC-cCCcccCCcHHHHhhc---cCCCc
Confidence            3479999999977   45555543     37899999999876554444444542 5689999999998763   01589


Q ss_pred             EEEEccCchhHHHHHHHHHH-CCCcEEEe-CCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          109 VVIDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~-~G~~vVig-TtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      ++|.|.++..+.+.++.|++ .|++.++- |.||.+.+..+|.++|++.|+.++ -||
T Consensus       568 laVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A~~~g~rli-GPN  624 (829)
T 3pff_A          568 VLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTII-GPA  624 (829)
T ss_dssp             EEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEE-CSS
T ss_pred             EEEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCEEE-cCC
Confidence            99999999999999999999 99996544 779999888999999999998554 455

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=98.83  E-value=2e-08  Score=90.16  Aligned_cols=100  Identities=19%  Similarity=0.137  Sum_probs=74.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC---CCCcchhhhhcC-CCCCCccccC--CHHHHHhccccCCCcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH---SVGEDIGMVCDM-EQPLEIPVMS--DLTMVLGSISQSKARA  108 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~---~~g~d~g~l~g~-~~~~gv~v~~--dl~~~l~~~~~~~~~D  108 (220)
                      |+||+|+|++|++|+.+++.+.++|+++|+++..+.   ..|+.+.++... ....+..+.+  +.+++..      ++|
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~------~~D   77 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSP------GVD   77 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCT------TCS
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhc------CCC
Confidence            799999999999999999999999999999998876   778887765321 1111333332  4444433      799


Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeCCCC
Q 027650          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigTtG~  140 (220)
                      +|+.+++.....+.+..++++|+.+|.-+..|
T Consensus        78 vvf~a~p~~~s~~~~~~~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           78 VVFLATAHEVSHDLAPQFLEAGCVVFDLSGAF  109 (337)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCEEEECSSTT
T ss_pred             EEEECCChHHHHHHHHHHHHCCCEEEEcCCcc
Confidence            99944444445788899999999998766554

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=98.81  E-value=3e-08  Score=89.64  Aligned_cols=133  Identities=15%  Similarity=0.159  Sum_probs=88.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-------CCCccccC-CHHHHHhccccC
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-------PLEIPVMS-DLTMVLGSISQS  104 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~-------~~gv~v~~-dl~~~l~~~~~~  104 (220)
                      ++++||+|+|++|..|+++++.+.++|.+||+.+..+...|+.+.+......       ..+..+.+ +.++ +      
T Consensus         5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~------   77 (359)
T 4dpk_A            5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M------   77 (359)
T ss_dssp             -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C------
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h------
Confidence            3568999999999999999999999999999999887778888876432100       00122211 2222 2      


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-------------CCCHHHHHHHHHHhhhcC--ceEEEcCC-CcHH
Q 027650          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-------------HIQLETVSALSAFCDKAS--MGCLIAPT-LSIG  168 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-------------G~~~e~~~~L~~aA~~~~--v~vviapN-fS~G  168 (220)
                      .++|+|+.+++.....+.+..+++.|+.+|.=+.             +++.++++.++..-++.|  ..++-.|| +..+
T Consensus        78 ~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~  157 (359)
T 4dpk_A           78 DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQG  157 (359)
T ss_dssp             TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHH
T ss_pred             cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHH
Confidence            2799999555556667889999999999886443             245555544443221112  35677788 7777


Q ss_pred             HHHH
Q 027650          169 SILL  172 (220)
Q Consensus       169 v~ll  172 (220)
                      +.+.
T Consensus       158 ~~l~  161 (359)
T 4dpk_A          158 AAIP  161 (359)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=98.81  E-value=3e-08  Score=89.64  Aligned_cols=133  Identities=15%  Similarity=0.159  Sum_probs=88.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC-------CCCccccC-CHHHHHhccccC
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ-------PLEIPVMS-DLTMVLGSISQS  104 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~-------~~gv~v~~-dl~~~l~~~~~~  104 (220)
                      ++++||+|+|++|..|+++++.+.++|.+||+.+..+...|+.+.+......       ..+..+.+ +.++ +      
T Consensus         5 ~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~------   77 (359)
T 4dpl_A            5 RRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M------   77 (359)
T ss_dssp             -CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C------
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHH-h------
Confidence            3568999999999999999999999999999999887778888876432100       00122211 2222 2      


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-------------CCCHHHHHHHHHHhhhcC--ceEEEcCC-CcHH
Q 027650          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-------------HIQLETVSALSAFCDKAS--MGCLIAPT-LSIG  168 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-------------G~~~e~~~~L~~aA~~~~--v~vviapN-fS~G  168 (220)
                      .++|+|+.+++.....+.+..+++.|+.+|.=+.             +++.++++.++..-++.|  ..++-.|| +..+
T Consensus        78 ~~vDvvf~a~p~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpEvN~~~i~~i~~~~~~~~~~~~iIanPgC~tt~  157 (359)
T 4dpl_A           78 DDVDIIFSPLPQGAAGPVEEQFAKEGFPVISNSPDHRFDPDVPLLVPELNPHTISLIDEQRKRREWKGFIVTTPLCTAQG  157 (359)
T ss_dssp             TTCCEEEECCCTTTHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCTTTCGGGGGHHHHHHHHHTCSSEEEECCCHHHHH
T ss_pred             cCCCEEEECCChHHHHHHHHHHHHCCCEEEEcCCCccCCCCccEEEcCCCHHHHhhHhhcccccccCccEEECCCcHHHH
Confidence            2799999555556667889999999999886443             245555544443221112  35677788 7777


Q ss_pred             HHHH
Q 027650          169 SILL  172 (220)
Q Consensus       169 v~ll  172 (220)
                      +.+.
T Consensus       158 ~~l~  161 (359)
T 4dpl_A          158 AAIP  161 (359)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=98.74  E-value=2.2e-08  Score=90.30  Aligned_cols=97  Identities=12%  Similarity=0.120  Sum_probs=69.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCC--CCccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQP--LEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~--~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ++||+|+||+|++|+.+++.+.++|+++|+++.++...|+......+. ...  .++.+. + ++.+.      ++|+|+
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~------~vDvVf   87 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFS------TVDAVF   87 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGG------GCSEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhc------CCCEEE
Confidence            489999999999999999999999999999999876556655543321 000  122222 2 33332      689999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCCCC
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTtG~  140 (220)
                      .++....+.+.+..+ ++|+.+|.-+..+
T Consensus        88 ~atp~~~s~~~a~~~-~aG~~VId~sa~~  115 (359)
T 1xyg_A           88 CCLPHGTTQEIIKEL-PTALKIVDLSADF  115 (359)
T ss_dssp             ECCCTTTHHHHHHTS-CTTCEEEECSSTT
T ss_pred             EcCCchhHHHHHHHH-hCCCEEEECCccc
Confidence            777777778999988 9999877655433

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=98.74  E-value=3.1e-08  Score=88.87  Aligned_cols=99  Identities=17%  Similarity=0.224  Sum_probs=69.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhh------hcC----------CCC-----CCccccC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMV------CDM----------EQP-----LEIPVMS   92 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d~g~l------~g~----------~~~-----~gv~v~~   92 (220)
                      |+||+|+|+ |+||+.++|++.++|++||+++.|+ ... ...+.+      .|.          +..     ..+.++.
T Consensus         3 ~ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d~~~~~-~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~   80 (337)
T 3e5r_O            3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITT-DYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFG   80 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSSCH-HHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEEC
T ss_pred             ceEEEEECc-CHHHHHHHHHHhCCCCeEEEEEECCCCCH-HHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEe
Confidence            479999998 9999999999999999999999984 110 001111      110          000     0122343


Q ss_pred             --CHHHHH-hccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCCC
Q 027650           93 --DLTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (220)
Q Consensus        93 --dl~~~l-~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTtG  139 (220)
                        |++++. ..    .++|+|+++|....+.+.+..++++|++ +||..|+
T Consensus        81 ~~dp~~l~w~~----~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa  127 (337)
T 3e5r_O           81 IRNPDEIPWAE----AGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPS  127 (337)
T ss_dssp             CSCGGGCCHHH----HTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             cCChHHccccc----cCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCC
Confidence              666651 11    2799999999999999999999999985 8887764

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=98.73  E-value=5.6e-08  Score=87.29  Aligned_cols=99  Identities=16%  Similarity=0.092  Sum_probs=70.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCC-------CCCcccc-CCHHHHHhccccC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQ-------PLEIPVM-SDLTMVLGSISQS  104 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~g~l~g~~~-------~~gv~v~-~dl~~~l~~~~~~  104 (220)
                      +|+||+|+||+|++|+.+++.+.++|+++|+++.+ +...|+...+..+...       ...+.+. .++++.++     
T Consensus         7 M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   81 (354)
T 1ys4_A            7 MKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF-----   81 (354)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG-----
T ss_pred             ccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhc-----
Confidence            35899999999999999999999999999999985 4445666654432100       0011121 24444432     


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650          105 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                      .++|+|+.+++...+.+.+..++++|+.||.-.
T Consensus        82 ~~~DvV~~atp~~~~~~~a~~~~~aG~~VId~s  114 (354)
T 1ys4_A           82 EDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNA  114 (354)
T ss_dssp             TTCCEEEECCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             CCCCEEEECCCchHHHHHHHHHHHCCCEEEECC
Confidence            269999977777777889999999999977543

>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*

Probab=98.72  E-value=3.1e-08  Score=90.49  Aligned_cols=122  Identities=9%  Similarity=0.022  Sum_probs=80.6

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEE-EecCCC---------C-c-----c---hhhhhc-CCCCCCccc-
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGA-IDSHSV---------G-E-----D---IGMVCD-MEQPLEIPV-   90 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~-vd~~~~---------g-~-----d---~g~l~g-~~~~~gv~v-   90 (220)
                      +.|+||+|.|+||.||+.+++.+.++|+ ++++++ .+++..         + +     |   ..++.. +. ..+..+ 
T Consensus         2 ~~m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~-~~~~~v~   80 (388)
T 1r0k_A            2 SQPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALA-GSSVEAA   80 (388)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTT-TCSSEEE
T ss_pred             CCceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhc-cCCcEEE
Confidence            3478999999999999999999999998 999988 432110         0 0     0   000000 00 001122 


Q ss_pred             --cCCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650           91 --MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus        91 --~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                        .+++.+++..    . +|+||+.+.-....+....|+++|++|++..-......-+.|.++|+++|+.++
T Consensus        81 ~g~~~~~el~~~----~-iDvVV~ai~G~aGl~ptlaAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~li  147 (388)
T 1r0k_A           81 AGADALVEAAMM----G-ADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLL  147 (388)
T ss_dssp             ESHHHHHHHHTS----C-CSEEEECCCSGGGHHHHHHHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEEE
T ss_pred             eCccHHHHHHcC----C-CCEEEEeCCCHHHHHHHHHHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEEE
Confidence              2334455543    4 899999886667788899999999999986333334445667788888777664

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=98.70  E-value=1.8e-08  Score=90.53  Aligned_cols=96  Identities=21%  Similarity=0.235  Sum_probs=66.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-----------------hhhhhcCCCCCCccccCCHHHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-----------------IGMVCDMEQPLEIPVMSDLTMV   97 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d-----------------~g~l~g~~~~~gv~v~~dl~~~   97 (220)
                      |+||||+|+ |++|+.+++++.++|+++|+++.|.. ....                 -+.+... ...++.+..+.+++
T Consensus         2 mikVgI~G~-G~IGr~v~r~l~~~~~~evvaV~d~~-~~~~~~l~~~dg~s~~g~~~~~~~v~~~-~~~~l~v~~~~~~~   78 (343)
T 2yyy_A            2 PAKVLINGY-GSIGKRVADAVSMQDDMEVIGVTKTK-PDFEARLAVEKGYKLFVAIPDNERVKLF-EDAGIPVEGTILDI   78 (343)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEEESS-CSHHHHHHHHTTCCEEESSCCHHHHHHH-HHTTCCCCCBGGGT
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCC-HHHHHHHHHhcCCccccccCCCceeecc-cCCeEEECCchHHh
Confidence            689999998 99999999999999999999999852 1110                 0111000 01123333345555


Q ss_pred             HhccccCCCccEEEEccCchhHHHHHH-HHHHCCCcEEEeCCC
Q 027650           98 LGSISQSKARAVVIDFTDASTVYDNVK-QATAFGMRSVVYVPH  139 (220)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~~~~~~-~al~~G~~vVigTtG  139 (220)
                      +.      ++|+|+++|....+.+.+. .++++|++||+..+.
T Consensus        79 ~~------~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~sap~  115 (343)
T 2yyy_A           79 IE------DADIVVDGAPKKIGKQNLENIYKPHKVKAILQGGE  115 (343)
T ss_dssp             GG------GCSEEEECCCTTHHHHHHHHTTTTTTCEEEECTTS
T ss_pred             cc------CCCEEEECCCccccHHHHHHHHHHCCCEEEECCCc
Confidence            53      7999997776676688885 999999998886654

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=98.68  E-value=7.2e-08  Score=74.56  Aligned_cols=110  Identities=13%  Similarity=0.160  Sum_probs=87.3

Q ss_pred             CceEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      +-+|+|+|++   ++.|..+.+.+.+. ++++.. +.+..     +++      .|.+.|.+++++-      . +|+++
T Consensus         4 p~siAVVGaS~~~~~~g~~v~~~L~~~-g~~V~p-VnP~~-----~~i------~G~~~y~sl~dlp------~-vDlav   63 (122)
T 3ff4_A            4 MKKTLILGATPETNRYAYLAAERLKSH-GHEFIP-VGRKK-----GEV------LGKTIINERPVIE------G-VDTVT   63 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHH-TCCEEE-ESSSC-----SEE------TTEECBCSCCCCT------T-CCEEE
T ss_pred             CCEEEEEccCCCCCCHHHHHHHHHHHC-CCeEEE-ECCCC-----CcC------CCeeccCChHHCC------C-CCEEE
Confidence            3469999997   67999999999875 677665 34431     222      3678888888763      4 99988


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~  170 (220)
                      .|++|+.+.+.++.|.+.|+..|+=++|+..   +++.++|+++|+.++  +| ++|+.
T Consensus        64 i~~p~~~v~~~v~e~~~~g~k~v~~~~G~~~---~e~~~~a~~~Girvv--~n-C~gv~  116 (122)
T 3ff4_A           64 LYINPQNQLSEYNYILSLKPKRVIFNPGTEN---EELEEILSENGIEPV--IG-CTLVM  116 (122)
T ss_dssp             ECSCHHHHGGGHHHHHHHCCSEEEECTTCCC---HHHHHHHHHTTCEEE--ES-CHHHH
T ss_pred             EEeCHHHHHHHHHHHHhcCCCEEEECCCCCh---HHHHHHHHHcCCeEE--CC-cCeEE
Confidence            8999999999999999999999988899864   468899999999988  46 88884

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=98.65  E-value=3.9e-08  Score=88.02  Aligned_cols=100  Identities=18%  Similarity=0.221  Sum_probs=67.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCCcch---------hhhhcC----CC-----CCCcccc--CC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDI---------GMVCDM----EQ-----PLEIPVM--SD   93 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d~---------g~l~g~----~~-----~~gv~v~--~d   93 (220)
                      |+||+|+|+ |++|+.++|++.++|++||+++.|+ ...+.-+         +.+.+.    +.     ...+.++  .|
T Consensus         3 ~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d   81 (335)
T 1u8f_O            3 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD   81 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             ceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCC
Confidence            579999997 9999999999999999999999984 2111100         001000    00     0012233  36


Q ss_pred             HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCC-CcEEEeCC
Q 027650           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVP  138 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G-~~vVigTt  138 (220)
                      ++++...   +.++|+|+++|....+.+.+..++++| +.|++..|
T Consensus        82 ~~~l~~~---~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           82 PSKIKWG---DAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             GGGCCTT---TTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSC
T ss_pred             HHHCccc---cCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccC
Confidence            6665210   137999999998888899999999999 56666655

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=98.64  E-value=6.4e-08  Score=81.45  Aligned_cols=93  Identities=14%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHH-HhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCccc--cCCHHHHHhccccCCCcc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAV-TKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARA  108 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i-~~~~~~eLvg~vd~~--~~g~d~g~l~g~~~~~gv~v--~~dl~~~l~~~~~~~~~D  108 (220)
                      ...||+|+|+ |++|+.+++.+ ... +++++|++|.+  ..|+.+         .|+++  ++++++++.    + ++|
T Consensus        79 ~~~rV~IIGa-G~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i---------~gv~V~~~~dl~ell~----~-~ID  142 (211)
T 2dt5_A           79 RKWGLCIVGM-GRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPV---------RGGVIEHVDLLPQRVP----G-RIE  142 (211)
T ss_dssp             SCEEEEEECC-SHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEE---------TTEEEEEGGGHHHHST----T-TCC
T ss_pred             CCCEEEEECc-cHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhh---------cCCeeecHHhHHHHHH----c-CCC
Confidence            3479999998 99999999963 334 89999999963  223322         13444  678888886    2 799


Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEE-EeCC-CCCH
Q 027650          109 VVIDFTDASTVYDNVKQATAFGMRSV-VYVP-HIQL  142 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vV-igTt-G~~~  142 (220)
                      +|+.+++...+.+.+..++++|++.| ..+| .++.
T Consensus       143 ~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P~~l~v  178 (211)
T 2dt5_A          143 IALLTVPREAAQKAADLLVAAGIKGILNFAPVVLEV  178 (211)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHTCCEEEECSSSCCCC
T ss_pred             EEEEeCCchhHHHHHHHHHHcCCCEEEECCcccccC
Confidence            98877777777899999999999955 5577 4443

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=98.62  E-value=1e-07  Score=89.07  Aligned_cols=130  Identities=14%  Similarity=0.140  Sum_probs=88.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcE---EEEEEecCCCCcchhhhhcCCCCCCcccc-CCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGME---VAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~e---Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVV  110 (220)
                      ++||.|+|+ |.||+.+++.+.++++++   ++ ++|+...+.++.+..|.. ...+.+. ++.+++++.+.+  +.|+|
T Consensus        13 ~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~-vaD~~~~~~~~~~~~g~~-~~~~~Vdadnv~~~l~aLl~--~~DvV   87 (480)
T 2ph5_A           13 KNRFVILGF-GCVGQALMPLIFEKFDIKPSQVT-IIAAEGTKVDVAQQYGVS-FKLQQITPQNYLEVIGSTLE--ENDFL   87 (480)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEE-EEESSCCSCCHHHHHTCE-EEECCCCTTTHHHHTGGGCC--TTCEE
T ss_pred             CCCEEEECc-CHHHHHHHHHHHhCCCCceeEEE-EeccchhhhhHHhhcCCc-eeEEeccchhHHHHHHHHhc--CCCEE
Confidence            368999997 999999999999998874   44 346655566666555532 2233342 344444432211  35999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCC----C-CCH-----------HHHHHHHHHhhh-cCceEEEcCCCcHHHH
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVP----H-IQL-----------ETVSALSAFCDK-ASMGCLIAPTLSIGSI  170 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTt----G-~~~-----------e~~~~L~~aA~~-~~v~vviapNfS~Gv~  170 (220)
                      |+.+.|....+.+++|+++|++.|--+-    + .+.           +..+.+++.+++ +| ..+...+|.+|+.
T Consensus        88 IN~s~~~~~l~Im~acleaGv~YlDTa~E~~~p~~~~~~~~p~~~~~Y~~~~~~~~~~~~~~G-tAilg~G~nPGvv  163 (480)
T 2ph5_A           88 IDVSIGISSLALIILCNQKGALYINAATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQK-TALITHGANPGLV  163 (480)
T ss_dssp             EECCSSSCHHHHHHHHHHHTCEEEESSCCCCCC----------CCCHHHHHHHHHTTTTTCCS-CEECSCBTTTBHH
T ss_pred             EECCccccCHHHHHHHHHcCCCEEECCCCcccccccccccCcchhhhHHHHHHHHHHHHhcCC-cEEecCCCCccHH
Confidence            9999999999999999999999995331    1 111           223456666644 67 7777788999985

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.60  E-value=1.1e-07  Score=80.20  Aligned_cols=93  Identities=20%  Similarity=0.340  Sum_probs=63.2

Q ss_pred             CceEEEEcCCCHHHHHHHHH-HHhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIA-VTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~-i~~~~~~eLvg~vd~~--~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      .+||+|+|+ |++|+.+++. ....++++++|++|.+  ..|+.++       ..++..++++++++.+     . |++|
T Consensus        85 ~~rV~IIGA-G~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~-------gv~V~~~~dl~eli~~-----~-D~Vi  150 (215)
T 2vt3_A           85 MTDVILIGV-GNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVG-------GVPVYNLDDLEQHVKD-----E-SVAI  150 (215)
T ss_dssp             --CEEEECC-SHHHHHHHHCC------CCEEEEEESCTTTTTCEET-------TEEEEEGGGHHHHCSS-----C-CEEE
T ss_pred             CCEEEEEcc-CHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhc-------CCeeechhhHHHHHHh-----C-CEEE
Confidence            468999998 9999999995 3456789999999964  2333221       1123336788898863     4 9888


Q ss_pred             EccCchhHHHHHHHHHHCCCc-EEEeCC-CCC
Q 027650          112 DFTDASTVYDNVKQATAFGMR-SVVYVP-HIQ  141 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~-vVigTt-G~~  141 (220)
                      .+++...+.+.+..++++|++ ++..+| .++
T Consensus       151 IAvPs~~~~ei~~~l~~aGi~~Ilnf~P~~l~  182 (215)
T 2vt3_A          151 LTVPAVAAQSITDRLVALGIKGILNFTPARLN  182 (215)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCCEEEECSSCCCC
T ss_pred             EecCchhHHHHHHHHHHcCCCEEEEcCceecc
Confidence            666666777899999999999 666677 344

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=98.57  E-value=1.6e-07  Score=84.71  Aligned_cols=97  Identities=14%  Similarity=0.076  Sum_probs=70.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc-CCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -|+||+|+|+||..|++++|.+.++|.+||+.+.++...|+.+.++...- ..++.+. .+.+++..      ++|+|+ 
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~-~~~l~~~~~~~~~~~~------~~Dvvf-   83 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPST-LENSILSEFDPEKVSK------NCDVLF-   83 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGG-CCCCBCBCCCHHHHHH------HCSEEE-
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhh-ccCceEEeCCHHHhhc------CCCEEE-
Confidence            58999999999999999999999999999999887777888887654310 1233332 24555543      699999 


Q ss_pred             ccCchhH-HHHHHHHHHCCCcEEEeCCCC
Q 027650          113 FTDASTV-YDNVKQATAFGMRSVVYVPHI  140 (220)
Q Consensus       113 fT~p~~~-~~~~~~al~~G~~vVigTtG~  140 (220)
                      |+.|... .+.+..+  +|+.||--...|
T Consensus        84 ~alp~~~s~~~~~~~--~g~~VIDlSsdf  110 (351)
T 1vkn_A           84 TALPAGASYDLVREL--KGVKIIDLGADF  110 (351)
T ss_dssp             ECCSTTHHHHHHTTC--CSCEEEESSSTT
T ss_pred             ECCCcHHHHHHHHHh--CCCEEEECChhh
Confidence            7676655 5566555  898888655544

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=98.55  E-value=1.6e-07  Score=83.91  Aligned_cols=93  Identities=12%  Similarity=0.041  Sum_probs=67.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      +|+||+|+||+|++|+.+++.+.++  |++||+++.++...|+... +.+    ..+.+ .+++....     .++|+|+
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~-~~~----~~i~~-~~~~~~~~-----~~vDvVf   70 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR-FNG----KTVRV-QNVEEFDW-----SQVHIAL   70 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE-ETT----EEEEE-EEGGGCCG-----GGCSEEE
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee-ecC----ceeEE-ecCChHHh-----cCCCEEE
Confidence            4799999999999999999999988  8999999987655555432 111    12222 22222111     2689999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeC
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                      .++......+.+..+++.|+.+|.-+
T Consensus        71 ~a~g~~~s~~~a~~~~~~G~~vId~s   96 (336)
T 2r00_A           71 FSAGGELSAKWAPIAAEAGVVVIDNT   96 (336)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECS
T ss_pred             ECCCchHHHHHHHHHHHcCCEEEEcC
Confidence            77777777899999999999877644

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=98.54  E-value=2.6e-06  Score=77.02  Aligned_cols=124  Identities=9%  Similarity=0.027  Sum_probs=78.3

Q ss_pred             CceEEEEcCCCHHHHHHHH-HHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccE
Q 027650           35 NIKVIINGAVKEIGRAAVI-AVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAV  109 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~-~i~~~--~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DV  109 (220)
                      |+||+|+||+|++|+.+++ ++.++  |.+++..+..+ ..|+....+.|    ..+.+.  .+.++ +.      ++|+
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~-s~G~~v~~~~g----~~i~~~~~~~~~~-~~------~~Dv   68 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTS-QLGQAAPSFGG----TTGTLQDAFDLEA-LK------ALDI   68 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-STTSBCCGGGT----CCCBCEETTCHHH-HH------TCSE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeC-CCCCCccccCC----CceEEEecCChHH-hc------CCCE
Confidence            6899999999999999999 55554  34677655443 35765532322    123333  24454 33      7999


Q ss_pred             EEEccCchhHHHHHHHHHHCCCc-EEEeCCC-C--C-------HH-HHHHHHHHhhhcCceEEEcCC-CcHHHHH
Q 027650          110 VIDFTDASTVYDNVKQATAFGMR-SVVYVPH-I--Q-------LE-TVSALSAFCDKASMGCLIAPT-LSIGSIL  171 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~-vVigTtG-~--~-------~e-~~~~L~~aA~~~~v~vviapN-fS~Gv~l  171 (220)
                      |++++......+.+..+++.|++ +||.-++ |  +       +| ..+.+.. ++..|+.++..|| +..+..+
T Consensus        69 Vf~a~g~~~s~~~a~~~~~~G~k~vVID~ss~~R~~~~~~~~vpevN~~~i~~-~~~~g~~~Ianp~Cttt~~~~  142 (367)
T 1t4b_A           69 IVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITD-GLNNGIRTFVGGNCTVSLMLM  142 (367)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHH-HHHTTCCEEEECCHHHHHHHH
T ss_pred             EEECCCchhHHHHHHHHHHCCCCEEEEcCChhhccCCCCcEEeCCcCHHHHhh-hhhcCCCEEEeCCHHHHHHHH
Confidence            99777777778999999999973 6666553 2  1       11 1233432 2234556787888 5555533

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=98.54  E-value=2.9e-07  Score=83.83  Aligned_cols=99  Identities=21%  Similarity=0.167  Sum_probs=68.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe-cCCCCcchhhhhcCCCC-------CCccccCCHHH--HHhcccc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID-SHSVGEDIGMVCDMEQP-------LEIPVMSDLTM--VLGSISQ  103 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd-~~~~g~d~g~l~g~~~~-------~gv~v~~dl~~--~l~~~~~  103 (220)
                      +|+||+|+|+||..|+++++.+.++|.++|+.+.. +...|+.+.++......       .+..+ .+++.  .+.    
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v-~~~~~~~~~~----   92 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVV-QECKPEGNFL----   92 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBC-EESSSCTTGG----
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceE-EeCchhhhcc----
Confidence            35899999999999999999999999999998874 45678887654321000       01122 22221  232    


Q ss_pred             CCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650          104 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                        ++|+|+.+++.....+.+..+++.|+.+|.-+..
T Consensus        93 --~~Dvvf~alp~~~s~~~~~~~~~~G~~VIDlSa~  126 (381)
T 3hsk_A           93 --ECDVVFSGLDADVAGDIEKSFVEAGLAVVSNAKN  126 (381)
T ss_dssp             --GCSEEEECCCHHHHHHHHHHHHHTTCEEEECCST
T ss_pred             --cCCEEEECCChhHHHHHHHHHHhCCCEEEEcCCc
Confidence              6999994444445578888999999998875543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.53  E-value=5.3e-07  Score=78.52  Aligned_cols=137  Identities=17%  Similarity=0.105  Sum_probs=75.6

Q ss_pred             ccccccccCCcccccc--CCCCC-CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc
Q 027650           13 HHISQNVKAKRFISCS--TNPPQ-SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP   89 (220)
Q Consensus        13 ~~~~~~~~~~~~~~~~--~~~~~-~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~   89 (220)
                      ||-|+.+.-+-..-+-  ..++. .++||+|+|+ |.||+.+++.+... ++++ .++|++.  ..+..+.    ..|+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~-G~mG~~~a~~l~~~-g~~V-~~~~~~~--~~~~~~~----~~g~~   75 (316)
T 2uyy_A            5 HHHSSGVDLGTENLYFQSMGSITPTDKKIGFLGL-GLMGSGIVSNLLKM-GHTV-TVWNRTA--EKCDLFI----QEGAR   75 (316)
T ss_dssp             --------------------CCCCCSSCEEEECC-SHHHHHHHHHHHHT-TCCE-EEECSSG--GGGHHHH----HTTCE
T ss_pred             cccccccCccccceeecCCCCCCCCCCeEEEEcc-cHHHHHHHHHHHhC-CCEE-EEEeCCH--HHHHHHH----HcCCE
Confidence            5556665544433333  22322 2479999997 99999999988764 6775 4566532  2222332    23566


Q ss_pred             ccCCHHHHHhccccCCCccEEEEccC-chhHHHHHHH------HHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc
Q 027650           90 VMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA  162 (220)
Q Consensus        90 v~~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~------al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia  162 (220)
                      ++.++++++.      ++|+||.+++ |....+.+..      .+..|..+|. .+..+++..++|.+...+.++.++-+
T Consensus        76 ~~~~~~~~~~------~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~l~~~~~~~~~~~v~~  148 (316)
T 2uyy_A           76 LGRTPAEVVS------TCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVD-MSTVDADTVTELAQVIVSRGGRFLEA  148 (316)
T ss_dssp             ECSCHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             EcCCHHHHHh------cCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCEEEEc
Confidence            7788888876      6999996665 4444444432      2345665554 34456666677777766566777766


Q ss_pred             CCC
Q 027650          163 PTL  165 (220)
Q Consensus       163 pNf  165 (220)
                      |.+
T Consensus       149 p~~  151 (316)
T 2uyy_A          149 PVS  151 (316)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            644

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.52  E-value=2.1e-07  Score=78.80  Aligned_cols=99  Identities=15%  Similarity=0.170  Sum_probs=67.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +||||+|+|+ |+||+.+++.+... +.+ |.++|++.  ..+..+.   +.+|+.+++++++++.      ++|+||.+
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~-g~~-v~~~~~~~--~~~~~~~---~~~g~~~~~~~~~~~~------~~D~Vi~~   67 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQT-PHE-LIISGSSL--ERSKEIA---EQLALPYAMSHQDLID------QVDLVILG   67 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTS-SCE-EEEECSSH--HHHHHHH---HHHTCCBCSSHHHHHH------TCSEEEEC
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhC-CCe-EEEECCCH--HHHHHHH---HHcCCEeeCCHHHHHh------cCCEEEEE
Confidence            5689999996 99999999988765 444 56777642  2222222   1235667889999886      79999988


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHH
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSAL  148 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L  148 (220)
                      ++|..+.+.+.. ++.|. +|+.++ |.+.++.+++
T Consensus        68 v~~~~~~~v~~~-l~~~~-~vv~~~~~~~~~~l~~~  101 (259)
T 2ahr_A           68 IKPQLFETVLKP-LHFKQ-PIISMAAGISLQRLATF  101 (259)
T ss_dssp             SCGGGHHHHHTT-SCCCS-CEEECCTTCCHHHHHHH
T ss_pred             eCcHhHHHHHHH-hccCC-EEEEeCCCCCHHHHHHh
Confidence            887766665544 34676 555564 7887654443

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=98.49  E-value=2.9e-06  Score=76.92  Aligned_cols=124  Identities=10%  Similarity=-0.011  Sum_probs=80.6

Q ss_pred             ceEEEEcCCCHHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~-~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV  110 (220)
                      |||+|+||||..|+++++ ++.++|  ..+++.+..+. .|+...++.|.    ...+.  .+.++ +.      ++|+|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~----~~~~~~~~~~~~-~~------~~Dvv   68 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD----AGMLHDAFDIES-LK------QLDAV   68 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC----CCBCEETTCHHH-HT------TCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC----ceEEEecCChhH-hc------cCCEE
Confidence            699999999999999999 999988  78998876654 67766554331    22222  23444 33      79999


Q ss_pred             EEccCchhHHHHHHHHHHCCC-cEEEeCCC---CCH-------H-HHHHHHHHhhhcCceEEEcCC-CcHHHHHH
Q 027650          111 IDFTDASTVYDNVKQATAFGM-RSVVYVPH---IQL-------E-TVSALSAFCDKASMGCLIAPT-LSIGSILL  172 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~-~vVigTtG---~~~-------e-~~~~L~~aA~~~~v~vviapN-fS~Gv~ll  172 (220)
                      +.++......+.+..+++.|. .+||-.++   +++       | ..+.|+. +++.++.++-.|| +..++.+.
T Consensus        69 f~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~-~~~~~i~~Ianp~C~tt~~~l~  142 (370)
T 3pzr_A           69 ITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILH-GIHHGTKTFVGGNCTVSLMLMA  142 (370)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHH-HHHTTCCEEEECCHHHHHHHHH
T ss_pred             EECCChHHHHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhh-hhhcCCcEEEcCChHHHHHHHH
Confidence            955555556788889999997 36655553   221       1 1123332 2234566777888 55665443

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.49  E-value=7.7e-07  Score=76.29  Aligned_cols=114  Identities=12%  Similarity=0.094  Sum_probs=72.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +||||+|+|+ |+||+.+++.+... ++++. ++| +.  ..+..+.    ..|+.++.++++++.      ++|+||.+
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~-g~~V~-~~~-~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~   65 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARA-GHQLH-VTT-IG--PVADELL----SLGAVNVETARQVTE------FADIIFIM   65 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHT-TCEEE-ECC-SS--CCCHHHH----TTTCBCCSSHHHHHH------TCSEEEEC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhC-CCEEE-EEc-CH--HHHHHHH----HcCCcccCCHHHHHh------cCCEEEEE
Confidence            5689999996 99999999988764 77875 455 32  2233333    236677889999886      79999966


Q ss_pred             cCchhHHHHHHH-------HHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          114 TDASTVYDNVKQ-------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       114 T~p~~~~~~~~~-------al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      ++.....+.+..       .++.|..+|.-+++ .+...++|.+...+.++.++-+|-
T Consensus        66 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~~g~~~~~~p~  122 (295)
T 1yb4_A           66 VPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSI-SPIETKRFAQRVNEMGADYLDAPV  122 (295)
T ss_dssp             CSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCC-CHHHHHHHHHHHHTTTEEEEECCE
T ss_pred             CCCHHHHHHHHhCchhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHHcCCeEEEccC
Confidence            655443433332       24456656544444 555667777777666666654443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.49  E-value=2.1e-06  Score=62.92  Aligned_cols=105  Identities=16%  Similarity=0.179  Sum_probs=69.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc----c---CCHHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~---~dl~~~l~~~~~~~~  106 (220)
                      +++||+|+|+ |.||+.+++.+.+....+++. ++++.  .....+..    .++..    .   +++++++.      +
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~-~~r~~--~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~------~   69 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTV-ADHDL--AALAVLNR----MGVATKQVDAKDEAGLAKALG------G   69 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEE-EESCH--HHHHHHHT----TTCEEEECCTTCHHHHHHHTT------T
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEE-EeCCH--HHHHHHHh----CCCcEEEecCCCHHHHHHHHc------C
Confidence            4679999999 999999999998764377654 55431  12222221    12111    1   23444443      7


Q ss_pred             ccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhh
Q 027650          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK  154 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~  154 (220)
                      +|+||+++++......+..+.+.|++.+.-+  -+.+..+++.++.++
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~  115 (118)
T 3ic5_A           70 FDAVISAAPFFLTPIIAKAAKAAGAHYFDLT--EDVAATNAVRALVED  115 (118)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHTTCEEECCC--SCHHHHHHHHHHHHC
T ss_pred             CCEEEECCCchhhHHHHHHHHHhCCCEEEec--CcHHHHHHHHHHHHh
Confidence            9999999888888888999999999988533  234455667766655

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=98.48  E-value=4.5e-06  Score=75.87  Aligned_cols=126  Identities=11%  Similarity=0.047  Sum_probs=82.1

Q ss_pred             CCceEEEEcCCCHHHHHHHH-HHHhcC--CcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCcc
Q 027650           34 SNIKVIINGAVKEIGRAAVI-AVTKAR--GMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARA  108 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~-~i~~~~--~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~D  108 (220)
                      +++||+|+||||..|+++++ ++.++|  ..+|+.+..+ ..|+...++.|.    ...+.  ++.++ +.      ++|
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~----~~~v~~~~~~~~-~~------~vD   70 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKN----ETTLKDATSIDD-LK------KCD   70 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCS----CCBCEETTCHHH-HH------TCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCC----ceEEEeCCChhH-hc------CCC
Confidence            45899999999999999999 999988  7899887665 567765554331    22222  23444 33      799


Q ss_pred             EEEEccCchhHHHHHHHHHHCCC-cEEEeCCC---CCH-------H-HHHHHHHHhhhcCceEEEcCC-CcHHHHHH
Q 027650          109 VVIDFTDASTVYDNVKQATAFGM-RSVVYVPH---IQL-------E-TVSALSAFCDKASMGCLIAPT-LSIGSILL  172 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~-~vVigTtG---~~~-------e-~~~~L~~aA~~~~v~vviapN-fS~Gv~ll  172 (220)
                      +|+.++......+.+..+++.|+ .+||-.++   +++       | ..+.|+. +++.++.++-.|| +..++.+.
T Consensus        71 vvf~a~~~~~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~-~~~~~i~~Ianp~C~tt~~~l~  146 (377)
T 3uw3_A           71 VIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVIKD-ALVNGTKNFIGGNCTVSLMLMA  146 (377)
T ss_dssp             EEEECSCHHHHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHHHH-HHHTTCCEEEECCHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHHhh-hhhcCCcEEEcCCHHHHHHHHH
Confidence            99955555555788889999997 36665553   221       1 1233433 2234566677888 66665443

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=98.45  E-value=6e-07  Score=80.86  Aligned_cols=98  Identities=14%  Similarity=0.069  Sum_probs=67.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC-----CcEEEEEEecCCCCcchhhhhcC-CCCCCcccc-CCHHHHHhccccCCCc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR-----GMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVM-SDLTMVLGSISQSKAR  107 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-----~~eLvg~vd~~~~g~d~g~l~g~-~~~~gv~v~-~dl~~~l~~~~~~~~~  107 (220)
                      |+||+|+||+|++|+.+++.+.+++     +++++.+.++...|+....+.+. .....+.+. .+.+ .+.      ++
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~-~~~------~~   81 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAA-VLG------GH   81 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHH-HHT------TC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHH-Hhc------CC
Confidence            6899999999999999999999999     89999988765556655443211 000122222 1333 232      79


Q ss_pred             cEEEEccCchhHHHHHHHHHHCCCcEEEeCCCC
Q 027650          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI  140 (220)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~  140 (220)
                      |+|+.++......+.+..+ ++|+.+|.-+..+
T Consensus        82 DvVf~alg~~~s~~~~~~~-~~G~~vIDlSa~~  113 (352)
T 2nqt_A           82 DAVFLALPHGHSAVLAQQL-SPETLIIDCGADF  113 (352)
T ss_dssp             SEEEECCTTSCCHHHHHHS-CTTSEEEECSSTT
T ss_pred             CEEEECCCCcchHHHHHHH-hCCCEEEEECCCc
Confidence            9999555556668888888 9999887655543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.44  E-value=3.1e-07  Score=77.96  Aligned_cols=97  Identities=13%  Similarity=0.127  Sum_probs=69.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|||+|+|+ |+||+.+++.+... ++++|.++|++.  ..+..+..   ..|+.+++++++++.      ++|+||.++
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~-g~~~v~~~~~~~--~~~~~~~~---~~g~~~~~~~~~~~~------~~Dvvi~av   76 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRK-GFRIVQVYSRTE--ESARELAQ---KVEAEYTTDLAEVNP------YAKLYIVSL   76 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSH--HHHHHHHH---HTTCEEESCGGGSCS------CCSEEEECC
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHC-CCeEEEEEeCCH--HHHHHHHH---HcCCceeCCHHHHhc------CCCEEEEec
Confidence            479999997 99999999998765 678888888642  22222221   236677888888774      799999888


Q ss_pred             CchhHHHHHHHHHH---CCCcEEEeCCCCCHHH
Q 027650          115 DASTVYDNVKQATA---FGMRSVVYVPHIQLET  144 (220)
Q Consensus       115 ~p~~~~~~~~~al~---~G~~vVigTtG~~~e~  144 (220)
                      ++..+.+.+.....   .|..+|..++|++.+.
T Consensus        77 ~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           77 KDSAFAELLQGIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             CHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGG
T ss_pred             CHHHHHHHHHHHHhhcCCCcEEEECCCCCchHH
Confidence            88776666655443   5666777677877554

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.44  E-value=1.8e-06  Score=74.28  Aligned_cols=115  Identities=16%  Similarity=0.177  Sum_probs=74.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .++||+|+|+ |+||+.+++.+... +++++ ++|++.  .....+.    ..|+.+++++++++.      ++|+||.+
T Consensus         3 ~~~~i~iiG~-G~~G~~~a~~l~~~-g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~   67 (301)
T 3cky_A            3 KSIKIGFIGL-GAMGKPMAINLLKE-GVTVY-AFDLME--ANVAAVV----AQGAQACENNQKVAA------ASDIIFTS   67 (301)
T ss_dssp             -CCEEEEECC-CTTHHHHHHHHHHT-TCEEE-EECSSH--HHHHHHH----TTTCEECSSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHC-CCeEE-EEeCCH--HHHHHHH----HCCCeecCCHHHHHh------CCCEEEEE
Confidence            4579999997 99999999988764 77865 577531  2222332    236677889999886      69999966


Q ss_pred             cCchhHH-HHH------HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          114 TDASTVY-DNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       114 T~p~~~~-~~~------~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      ++..... +.+      ...++.|..+|.-+++. ++..++|.+...+.++.++-+|.
T Consensus        68 vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~-~~~~~~l~~~~~~~g~~~~~~p~  124 (301)
T 3cky_A           68 LPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVS-PSSTLKMAKVAAEKGIDYVDAPV  124 (301)
T ss_dssp             CSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCC-HHHHHHHHHHHHHTTCEEEECCE
T ss_pred             CCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeEEEccC
Confidence            6444333 333      23455677666655555 44556677776666777665554

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.43  E-value=2.2e-06  Score=75.36  Aligned_cols=119  Identities=13%  Similarity=0.121  Sum_probs=79.1

Q ss_pred             CCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      ++..++||+|+|+ |+||+.+++.+... ++++. ++|++.  ..+..+.    ..|+..++++++++.      ++|+|
T Consensus        27 ~~~~~~~I~iIG~-G~mG~~~a~~l~~~-G~~V~-~~dr~~--~~~~~l~----~~g~~~~~~~~e~~~------~aDvV   91 (320)
T 4dll_A           27 SDPYARKITFLGT-GSMGLPMARRLCEA-GYALQ-VWNRTP--ARAASLA----ALGATIHEQARAAAR------DADIV   91 (320)
T ss_dssp             --CCCSEEEEECC-TTTHHHHHHHHHHT-TCEEE-EECSCH--HHHHHHH----TTTCEEESSHHHHHT------TCSEE
T ss_pred             cccCCCEEEEECc-cHHHHHHHHHHHhC-CCeEE-EEcCCH--HHHHHHH----HCCCEeeCCHHHHHh------cCCEE
Confidence            3445689999997 99999999998864 78865 467642  2233333    336778899999986      79999


Q ss_pred             EEccCchhH-HHHHH-----HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          111 IDFTDASTV-YDNVK-----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       111 IDfT~p~~~-~~~~~-----~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      |.+.+.... .+.+.     ..+..|..+| -++...++..+++.+..++.|+.++-+|-+
T Consensus        92 i~~vp~~~~~~~v~~~~~~~~~l~~~~~vi-~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  151 (320)
T 4dll_A           92 VSMLENGAVVQDVLFAQGVAAAMKPGSLFL-DMASITPREARDHAARLGALGIAHLDTPVS  151 (320)
T ss_dssp             EECCSSHHHHHHHHTTTCHHHHCCTTCEEE-ECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             EEECCCHHHHHHHHcchhHHhhCCCCCEEE-ecCCCCHHHHHHHHHHHHHcCCEEEeCCCc
Confidence            965553333 33321     2344555555 455556777788888877778887776654

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=98.42  E-value=5.8e-07  Score=80.63  Aligned_cols=94  Identities=17%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhhcCCC-----CCCcccc--C
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVCDMEQ-----PLEIPVM--S   92 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~-------------~~~g~d~g~l~g~~~-----~~gv~v~--~   92 (220)
                      |+||+|+|+ |++|+.+.|++.++  |+++|+++.|.             ...|+..+++.-.+.     ...++++  .
T Consensus         2 ~ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (339)
T 3b1j_A            2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR   80 (339)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecC
Confidence            589999999 99999999999998  99999998764             112322221100000     0013333  3


Q ss_pred             CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc
Q 027650           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR  132 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~  132 (220)
                      |++++...   +.++|+|+++|......+.+...++.|..
T Consensus        81 dp~~l~w~---~~~vDvV~e~tg~~~s~e~a~~~l~~Gak  117 (339)
T 3b1j_A           81 NPLNLPWK---EWDIDLVIESTGVFVTAEGASKHIQAGAK  117 (339)
T ss_dssp             CGGGSCTT---TTTCCEEEECSSSCCBHHHHHHHHHTTCS
T ss_pred             ChHHCccc---ccCCCEEEECCCccccHHHHHHHHHcCCc
Confidence            55555320   12789999888888888999999999988

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=98.41  E-value=6.1e-07  Score=81.31  Aligned_cols=126  Identities=16%  Similarity=0.192  Sum_probs=81.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH-HHHhccccCCCccEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVV  110 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVV  110 (220)
                      +++||+|+|++|..|+++++.+.++  |..+|+.+..+...|+... +.|    .+..+ .+++ +.+      .++|+|
T Consensus         1 m~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~-~~~----~~~~~-~~~~~~~~------~~~Dvv   68 (366)
T 3pwk_A            1 MGYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK-FKD----QDITI-EETTETAF------EGVDIA   68 (366)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE-ETT----EEEEE-EECCTTTT------TTCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce-ecC----CCceE-eeCCHHHh------cCCCEE
Confidence            3689999999999999999999887  8899998877666676654 221    12222 1111 123      279999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCCCC--CHHH---HHHHHHHhhhcCceEEEcCC-CcHHHHH
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHI--QLET---VSALSAFCDKASMGCLIAPT-LSIGSIL  171 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTtG~--~~e~---~~~L~~aA~~~~v~vviapN-fS~Gv~l  171 (220)
                      +.++......+.+..+++.|+.+|.-+..|  +++.   ..++..-.-+....++-.|| +..++.+
T Consensus        69 f~a~~~~~s~~~a~~~~~~G~~vIDlSa~~R~~~~~p~~vpevN~~~i~~~~~iIanpgC~tt~~~l  135 (366)
T 3pwk_A           69 LFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNCSTIQMMV  135 (366)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGTTCCSEEECCCHHHHHHHH
T ss_pred             EECCChHhHHHHHHHHHHCCCEEEEcCCccccCCCceEEEccCCHHHHcCCCCeEECCCcHHHHHHH
Confidence            966666666889999999999888755543  2211   11222111111246777888 5566644

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=98.41  E-value=3.3e-07  Score=82.70  Aligned_cols=101  Identities=18%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCCcc---------hhhhhcC----CCC-----CCccccC--
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGED---------IGMVCDM----EQP-----LEIPVMS--   92 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d---------~g~l~g~----~~~-----~gv~v~~--   92 (220)
                      .|+||+|+|+ |++|+.++|++.++|++|||++.|+ ...+.-         -+.+.+.    +..     ..+.++.  
T Consensus        16 ~~ikVgI~G~-G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~   94 (354)
T 3cps_A           16 FQGTLGINGF-GRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAK   94 (354)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCS
T ss_pred             cceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecC
Confidence            4689999999 9999999999999999999999983 211100         0001000    000     0223332  


Q ss_pred             CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                      |++++...   +.++|+|+++|......+.+...++.|.. +||-.+
T Consensus        95 dp~~i~w~---~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~p  138 (354)
T 3cps_A           95 DPAEIPWG---ASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAP  138 (354)
T ss_dssp             CGGGCCHH---HHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSC
T ss_pred             ChHHCCcc---cCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCC
Confidence            55544210   01689999888878888999999999974 665544

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=98.40  E-value=6.2e-07  Score=80.17  Aligned_cols=100  Identities=23%  Similarity=0.177  Sum_probs=65.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc-----h----hhhhcCC----CC-----CCccccC--CH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED-----I----GMVCDME----QP-----LEIPVMS--DL   94 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d-----~----g~l~g~~----~~-----~gv~v~~--dl   94 (220)
                      |+||+|+|+ |++|+.++|++.++|++||+++.+....+.-     .    +.+.+.-    ..     ..+.++.  |+
T Consensus         1 ~ikVgI~G~-G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   79 (330)
T 1gad_O            1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (330)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             CeEEEEECc-CHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence            689999996 9999999999999999999999885221210     0    0111000    00     0112332  44


Q ss_pred             HHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      +++-..   ..++|+|+++|......+.+...++.|..+|+=+.
T Consensus        80 ~~i~w~---~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa  120 (330)
T 1gad_O           80 ANLKWD---EVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG  120 (330)
T ss_dssp             GGGCHH---HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESS
T ss_pred             hhCccc---cccCCEEEECCCccccHHHHHHHHHCCCEEEEECC
Confidence            443100   02689999888878888999999999999776443

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=98.39  E-value=7.2e-07  Score=79.79  Aligned_cols=93  Identities=16%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHH-HHhccccCCCccEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM-VLGSISQSKARAVV  110 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~-~l~~~~~~~~~DVV  110 (220)
                      +++||+|+||+|++|+.+++.+.  .+|.++|+++.++...|+... +.|    ..+.+. +++. .+.      ++|+|
T Consensus         5 m~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~-~~g----~~i~~~-~~~~~~~~------~~DvV   72 (340)
T 2hjs_A            5 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG-FAE----SSLRVG-DVDSFDFS------SVGLA   72 (340)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE-ETT----EEEECE-EGGGCCGG------GCSEE
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc-cCC----cceEEe-cCCHHHhc------CCCEE
Confidence            35799999999999999999998  779999999887654454332 111    112221 2221 122      68999


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      +.++......+.+..++++|+.+|.-+.
T Consensus        73 ~~a~g~~~s~~~a~~~~~aG~kvId~Sa  100 (340)
T 2hjs_A           73 FFAAAAEVSRAHAERARAAGCSVIDLSG  100 (340)
T ss_dssp             EECSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             EEcCCcHHHHHHHHHHHHCCCEEEEeCC
Confidence            9666666678899999999999876443

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=98.38  E-value=8.6e-07  Score=74.73  Aligned_cols=91  Identities=21%  Similarity=0.227  Sum_probs=68.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEecC---CCCc-chhhhhcCCCCCCcccc--CCHHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDSH---SVGE-DIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~~---~~g~-d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~  106 (220)
                      .+.||+|+|| |++|+.+++.+. ...+++++|++|.+   ..|+ .+         .|+|++  +++++++.+    .+
T Consensus        83 ~~~~V~IvGa-G~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i---------~GvpV~~~~dL~~~v~~----~~  148 (212)
T 3keo_A           83 STTNVMLVGC-GNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE---------DGIPVYGISTINDHLID----SD  148 (212)
T ss_dssp             SCEEEEEECC-SHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT---------TCCBEEEGGGHHHHC-C----CS
T ss_pred             CCCEEEEECc-CHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE---------CCeEEeCHHHHHHHHHH----cC
Confidence            4579999998 999999998742 45789999999964   2233 21         256664  677777764    58


Q ss_pred             ccEEEEccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      +|++|.+++.....+.+..+.+.|++-|.--+
T Consensus       149 Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFa  180 (212)
T 3keo_A          149 IETAILTVPSTEAQEVADILVKAGIKGILSFS  180 (212)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHHTCCEEEECS
T ss_pred             CCEEEEecCchhHHHHHHHHHHcCCCEEEEcC
Confidence            99999666666667888999999999987644

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=98.38  E-value=5.7e-07  Score=80.64  Aligned_cols=100  Identities=23%  Similarity=0.201  Sum_probs=66.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecC-------------CCCcchhhhh--c----CCCCCCcccc-
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSH-------------SVGEDIGMVC--D----MEQPLEIPVM-   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~-------------~~g~d~g~l~--g----~~~~~gv~v~-   91 (220)
                      |+||+|+|+ |++|+.++|++.+   +|+++|+++.+..             ..|+-.+.+.  +    .. ...++++ 
T Consensus         2 ~ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~-g~~i~v~~   79 (339)
T 2x5j_O            2 TVRVAINGF-GRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVG-DDAIRVLH   79 (339)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEET-TEEEEEEC
T ss_pred             CeEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEEC-CEEEEEEe
Confidence            589999998 9999999999998   8999999998740             1121111100  0    00 0123343 


Q ss_pred             -CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCCC
Q 027650           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH  139 (220)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTtG  139 (220)
                       .|++++...   +.++|+|+++|......+.+...++.|.. |||-.++
T Consensus        80 ~~dp~~l~~~---~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a  126 (339)
T 2x5j_O           80 ERSLQSLPWR---ELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG  126 (339)
T ss_dssp             CSSGGGCCHH---HHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             cCChHHCccc---ccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence             345543210   01689999888888888999999999987 5666555

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=98.37  E-value=7.7e-07  Score=81.02  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=63.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhh--c--CC-CCCCcccc--C
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC--D--ME-QPLEIPVM--S   92 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~-------------~~~g~d~g~l~--g--~~-~~~gv~v~--~   92 (220)
                      |+||+|+|+ |++|+.++|++.++  |+++||++-|.             ...|+..+++.  +  +. ....+.++  .
T Consensus         2 ~ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (380)
T 2d2i_A            2 TIRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDR   80 (380)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCS
T ss_pred             CcEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecC
Confidence            589999998 99999999999988  99999998773             11233222211  0  00 00013332  3


Q ss_pred             CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc
Q 027650           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR  132 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~  132 (220)
                      |++++...   +.++|+||++|......+.+...++.|..
T Consensus        81 dp~~l~w~---~~gvDvV~e~TG~f~s~e~a~~hl~aGak  117 (380)
T 2d2i_A           81 NPLNLPWK---EWDIDLVIESTGVFVTAEGASKHIQAGAK  117 (380)
T ss_dssp             CGGGCCHH---HHTCCEEEECSSSCCBHHHHHHHHHTTCS
T ss_pred             ChHHCCcc---cCCCCEEEECCCccccHHHHHHHHHcCCc
Confidence            55554210   01689999988888888999999999987

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.37  E-value=5e-06  Score=72.62  Aligned_cols=117  Identities=13%  Similarity=0.115  Sum_probs=78.0

Q ss_pred             CCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      ++..|+||+|+|+ |.||..+++.+... ++++. ++|++.  ..+..+.    ..|+..++++++++.      ++|+|
T Consensus        17 ~~~~m~~I~iIG~-G~mG~~~A~~l~~~-G~~V~-~~dr~~--~~~~~l~----~~g~~~~~~~~~~~~------~aDvv   81 (310)
T 3doj_A           17 RGSHMMEVGFLGL-GIMGKAMSMNLLKN-GFKVT-VWNRTL--SKCDELV----EHGASVCESPAEVIK------KCKYT   81 (310)
T ss_dssp             -CCCSCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEE
T ss_pred             ccccCCEEEEECc-cHHHHHHHHHHHHC-CCeEE-EEeCCH--HHHHHHH----HCCCeEcCCHHHHHH------hCCEE
Confidence            4456789999996 99999999998875 77766 467642  2233333    346777889999986      68999


Q ss_pred             EEccCch-hHHHHH---H---HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650          111 IDFTDAS-TVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus       111 IDfT~p~-~~~~~~---~---~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                      |.+.+.. .+.+.+   .   ..+..|. +|+-++...++..+++.+..++.|+.++-+|
T Consensus        82 i~~vp~~~~~~~v~~~~~~l~~~l~~g~-~vv~~st~~~~~~~~~~~~~~~~g~~~v~~p  140 (310)
T 3doj_A           82 IAMLSDPCAALSVVFDKGGVLEQICEGK-GYIDMSTVDAETSLKINEAITGKGGRFVEGP  140 (310)
T ss_dssp             EECCSSHHHHHHHHHSTTCGGGGCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             EEEcCCHHHHHHHHhCchhhhhccCCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            9555433 333333   1   2234454 4445666777777888888777777766555

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.37  E-value=6e-07  Score=74.79  Aligned_cols=122  Identities=22%  Similarity=0.080  Sum_probs=73.0

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .+|+||+|+|+ |+||..+++.+.+. +.+++.+++++.  ..+..+..   ..++..+.+..+.+.      ++|+||.
T Consensus        21 m~mmkI~IIG~-G~mG~~la~~l~~~-g~~V~~v~~r~~--~~~~~l~~---~~g~~~~~~~~~~~~------~aDvVil   87 (220)
T 4huj_A           21 QSMTTYAIIGA-GAIGSALAERFTAA-QIPAIIANSRGP--ASLSSVTD---RFGASVKAVELKDAL------QADVVIL   87 (220)
T ss_dssp             GGSCCEEEEEC-HHHHHHHHHHHHHT-TCCEEEECTTCG--GGGHHHHH---HHTTTEEECCHHHHT------TSSEEEE
T ss_pred             hcCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEECCCH--HHHHHHHH---HhCCCcccChHHHHh------cCCEEEE
Confidence            34689999996 99999999998874 788887777642  22222221   224444444445554      7999997


Q ss_pred             ccCchhHHHHHHHHH-HCCCcEEEeCCCCC-----HH------HHHHHHHHhhhcCceEEEc-CCCcHHH
Q 027650          113 FTDASTVYDNVKQAT-AFGMRSVVYVPHIQ-----LE------TVSALSAFCDKASMGCLIA-PTLSIGS  169 (220)
Q Consensus       113 fT~p~~~~~~~~~al-~~G~~vVigTtG~~-----~e------~~~~L~~aA~~~~v~vvia-pNfS~Gv  169 (220)
                      +++|..+.+.+.... ..|..+|.-+.|+.     .+      ..+.|.+....  .+++.+ ||+...+
T Consensus        88 avp~~~~~~v~~~l~~~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~~v  155 (220)
T 4huj_A           88 AVPYDSIADIVTQVSDWGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPG--AKVVKAFNTLPAAV  155 (220)
T ss_dssp             ESCGGGHHHHHTTCSCCTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTT--CEEEEESCSSCHHH
T ss_pred             eCChHHHHHHHHHhhccCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCC--CCEEECCCCCCHHH
Confidence            887777766665432 13554554444652     11      34556665533  555544 5555443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.36  E-value=4.4e-06  Score=71.85  Aligned_cols=112  Identities=16%  Similarity=0.106  Sum_probs=77.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      +||+|+|+ |+||+.+++.+... +++++ ++|++.  ..+..+.    ..|+..++++++++.      ++|+||.+.+
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKA-GCSVT-IWNRSP--EKAEELA----ALGAERAATPCEVVE------SCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSSG--GGGHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEee-cHHHHHHHHHHHHC-CCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEEEEcC
Confidence            69999996 99999999998865 78876 567642  2233333    236777889999986      6899996555


Q ss_pred             -chhHHHHH------HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650          116 -ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus       116 -p~~~~~~~------~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                       |..+.+.+      ...++.|..+| -+++.+++..+++.+..++.|+.++-+|
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~vi-~~st~~~~~~~~~~~~~~~~g~~~~~~p  120 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGYV-DMSTVDPATSQRIGVAVVAKGGRFLEAP  120 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEE-ECSCCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEE-eCCCCCHHHHHHHHHHHHHhCCEEEECC
Confidence             33444444      23445666554 5566777777888888777777766555

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=98.35  E-value=7.2e-07  Score=79.88  Aligned_cols=99  Identities=24%  Similarity=0.236  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhh--c----CCCCCCccccC--C
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVC--D----MEQPLEIPVMS--D   93 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~l~--g----~~~~~gv~v~~--d   93 (220)
                      |+||+|+|+ |++|+.+.|++.++|+++|+++.|..             ..|+-.+++.  +    .. ...+.++.  |
T Consensus         1 mikVgI~G~-G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~-g~~i~v~~~~d   78 (334)
T 3cmc_O            1 AVKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVN-GKEIIVKAERD   78 (334)
T ss_dssp             CEEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEET-TEEEEEECCSS
T ss_pred             CeEEEEECC-CHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEEC-CEEEEEEecCC
Confidence            689999999 99999999999999999999998741             1121101000  0    00 01234442  4


Q ss_pred             HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                      ++++-..   +.++|+|+++|......+.+...++.|.. +||--|
T Consensus        79 p~~i~w~---~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~p  121 (334)
T 3cmc_O           79 PENLAWG---EIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP  121 (334)
T ss_dssp             GGGCCTG---GGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hhhcCcc---cCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCC
Confidence            5444210   12689999888878888999999999973 555433

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=98.35  E-value=7.4e-07  Score=79.95  Aligned_cols=97  Identities=23%  Similarity=0.213  Sum_probs=66.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEec-------------CCCCcchhhhh---c----CCCCCCcccc-
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS-------------HSVGEDIGMVC---D----MEQPLEIPVM-   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~-------------~~~g~d~g~l~---g----~~~~~gv~v~-   91 (220)
                      |+||+|+|+ |++|+.++|++.++  |++||+++.|.             ...|+..+++.   +    .. ...+.++ 
T Consensus         1 ~ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~-g~~i~v~~   78 (337)
T 1rm4_O            1 KLKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVD-GKVIKVVS   78 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEET-TEEEEEEC
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEEC-CeEEEEEe
Confidence            689999999 99999999999998  99999999852             12333322221   1    00 0112233 


Q ss_pred             -CCHHHH-HhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeC
Q 027650           92 -SDLTMV-LGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus        92 -~dl~~~-l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT  137 (220)
                       .|++++ ..+    .++|+|+++|......+.+...++.|..+|+=+
T Consensus        79 ~~dp~~i~w~~----~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iS  122 (337)
T 1rm4_O           79 DRNPVNLPWGD----MGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLIT  122 (337)
T ss_dssp             CSCGGGSCHHH----HTCCEEEECSSSCCBHHHHHHHHHTTCSEEEES
T ss_pred             cCChhhCcccc----cCCCEEEECCCchhhHHHHHHHHHcCCEEEEEC
Confidence             344443 111    268999988887888899999999998888644

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.34  E-value=3.8e-06  Score=72.16  Aligned_cols=114  Identities=18%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|||+|+|+ |.||+.+++.+... +.++ .++|++.  .....+.    ..|+..+.++++++.      ++|+||.++
T Consensus         5 ~m~i~iiG~-G~~G~~~a~~l~~~-g~~V-~~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~D~vi~~v   69 (299)
T 1vpd_A            5 TMKVGFIGL-GIMGKPMSKNLLKA-GYSL-VVSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITML   69 (299)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHT-TCEE-EEECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEECC
T ss_pred             cceEEEECc-hHHHHHHHHHHHhC-CCEE-EEEeCCH--HHHHHHH----HCCCeecCCHHHHHh------CCCEEEEEC
Confidence            479999996 99999999998765 6775 5677531  2222222    236677889998886      699999666


Q ss_pred             CchhH-HHHH------HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          115 DASTV-YDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       115 ~p~~~-~~~~------~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      +.... ...+      ...++.|..+|.-+++. +...++|.+...+.++.++-+|-
T Consensus        70 ~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~~~~~~~g~~~~~~pv  125 (299)
T 1vpd_A           70 PNSPHVKEVALGENGIIEGAKPGTVLIDMSSIA-PLASREISDALKAKGVEMLDAPV  125 (299)
T ss_dssp             SSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCC-HHHHHHHHHHHHTTTCEEEECCE
T ss_pred             CCHHHHHHHHhCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeEEEecC
Confidence            53433 3333      23455676665444444 55556777777666776665443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.33  E-value=3.7e-06  Score=72.11  Aligned_cols=116  Identities=16%  Similarity=0.106  Sum_probs=75.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+|+|+ |+||+.+++.+... ++++. ++|++.  ..+..+.    ..|+.+++++++++.      ++|+||.+++
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~-g~~V~-~~~~~~--~~~~~~~----~~g~~~~~~~~~~~~------~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKH-GYPLI-IYDVFP--DACKEFQ----DAGEQVVSSPADVAE------KADRIITMLP   65 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHT-TCCEE-EECSST--HHHHHHH----TTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CeEEEEec-cHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HcCCeecCCHHHHHh------cCCEEEEeCC
Confidence            58999997 99999999998764 67765 567642  2233333    346777889998886      6899996664


Q ss_pred             chhH-HHHHHH------HHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHH
Q 027650          116 ASTV-YDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (220)
Q Consensus       116 p~~~-~~~~~~------al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~G  168 (220)
                      +... .+.+..      .++.|..+|. +.+.+.++.+++.+...+.++..+-+| .+.|
T Consensus        66 ~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~g~~~~~~p-~~~g  123 (296)
T 2gf2_A           66 TSINAIEAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKMGAVFMDAP-VSGG  123 (296)
T ss_dssp             SHHHHHHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEEEECC-EESH
T ss_pred             CHHHHHHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCEEEEcC-CCCC
Confidence            4433 333332      2345664554 779998888887776655555444334 4555

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.32  E-value=3.4e-06  Score=73.95  Aligned_cols=113  Identities=18%  Similarity=0.151  Sum_probs=73.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .|+||+|+|+ |.||..+++.+.+. ++ ++. ++|++........+.    ..|+..++++++++.      ++|+||.
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~-G~~~V~-~~dr~~~~~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi~   89 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQA-GAIDMA-AYDAASAESWRPRAE----ELGVSCKASVAEVAG------ECDVIFS   89 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHH-SCCEEE-EECSSCHHHHHHHHH----HTTCEECSCHHHHHH------HCSEEEE
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHC-CCCeEE-EEcCCCCHHHHHHHH----HCCCEEeCCHHHHHh------cCCEEEE
Confidence            4689999996 99999999998875 66 544 677631001122222    346777889999886      6999997


Q ss_pred             ccCchhHHHHHHHHHH---CCCcEEEeCCCCCHHHHHHHHHHhhhc--CceEE
Q 027650          113 FTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKA--SMGCL  160 (220)
Q Consensus       113 fT~p~~~~~~~~~al~---~G~~vVigTtG~~~e~~~~L~~aA~~~--~v~vv  160 (220)
                      +.++....+.+.....   .| .+|+-++...+....++.+...+.  |+.++
T Consensus        90 ~vp~~~~~~~~~~l~~~l~~~-~ivvd~st~~~~~~~~~~~~~~~~~~g~~~v  141 (312)
T 3qsg_A           90 LVTAQAALEVAQQAGPHLCEG-ALYADFTSCSPAVKRAIGDVISRHRPSAQYA  141 (312)
T ss_dssp             CSCTTTHHHHHHHHGGGCCTT-CEEEECCCCCHHHHHHHHHHHHHHCTTCEEE
T ss_pred             ecCchhHHHHHHhhHhhcCCC-CEEEEcCCCCHHHHHHHHHHHHhhcCCCeEE
Confidence            7777666665554433   33 356656666677777777766655  55444

>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1

Probab=98.30  E-value=1.7e-06  Score=80.19  Aligned_cols=107  Identities=14%  Similarity=0.133  Sum_probs=82.9

Q ss_pred             ceEEEEcCCC---HHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVK---EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~G---rMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .+|+|+|+++   ++|..+.+.+.+.. --.+..+.+.  +.   +      -.|+++|.+++++.+      .+|+++.
T Consensus         9 ~siAVvGas~~~~~~g~~v~~~l~~~g-~~~v~pVnP~--~~---~------i~G~~~y~sl~~lp~------~~Dlavi   70 (457)
T 2csu_A            9 KGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIK--EE---E------VQGVKAYKSVKDIPD------EIDLAII   70 (457)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSS--CS---E------ETTEECBSSTTSCSS------CCSEEEE
T ss_pred             CeEEEECcCCCCCchHHHHHHHHHHcC-CCEEEEECCC--CC---e------ECCEeccCCHHHcCC------CCCEEEE
Confidence            4799999974   78999999998765 3344556653  21   2      247899999998864      7999988


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEE-eCCCCCH--H----HHHHHHHHhhhcCceEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSVV-YVPHIQL--E----TVSALSAFCDKASMGCL  160 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVi-gTtG~~~--e----~~~~L~~aA~~~~v~vv  160 (220)
                      |++|+.+.+.++.|.+.|++.|+ =+.|+.+  +    ..+++.++++++|+.++
T Consensus        71 ~vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~vi  125 (457)
T 2csu_A           71 VVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII  125 (457)
T ss_dssp             CSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred             ecCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999654 4558743  1    25788999999998876

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.30  E-value=3.3e-06  Score=75.80  Aligned_cols=126  Identities=13%  Similarity=0.142  Sum_probs=75.6

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh----------hcCCCCCCccccCCHHHHHhccc
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV----------CDMEQPLEIPVMSDLTMVLGSIS  102 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l----------~g~~~~~gv~v~~dl~~~l~~~~  102 (220)
                      ..++||+|+|+ |.||..++..+.+. +.++. +++++.  ..+..+          .|..-+.++.+++|+++++.   
T Consensus        27 ~~~mkI~VIGa-G~mG~alA~~La~~-G~~V~-l~~r~~--~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~---   98 (356)
T 3k96_A           27 PFKHPIAILGA-GSWGTALALVLARK-GQKVR-LWSYES--DHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLE---   98 (356)
T ss_dssp             CCCSCEEEECC-SHHHHHHHHHHHTT-TCCEE-EECSCH--HHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHT---
T ss_pred             ccCCeEEEECc-cHHHHHHHHHHHHC-CCeEE-EEeCCH--HHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHh---
Confidence            34689999997 99999999988764 56655 456531  111111          11111123556789988885   


Q ss_pred             cCCCccEEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHH---HHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          103 QSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLET---VSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~---~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                         ++|+||.+.++....+.+...   +..+..+|.-+.|+..+.   .+.|.+..-...+.++..|||.--+
T Consensus        99 ---~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev  168 (356)
T 3k96_A           99 ---GVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEV  168 (356)
T ss_dssp             ---TCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHH
T ss_pred             ---cCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHH
Confidence               799999555555444444433   335666777677887653   1123332222346677889987654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.29  E-value=3.2e-06  Score=72.10  Aligned_cols=113  Identities=13%  Similarity=-0.003  Sum_probs=70.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |+||+|+|+ |.||+.+++.+..  ++++. ++|++.  .....+.    ..|+.+++ +++++.      ++|+||.++
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~--g~~V~-~~~~~~--~~~~~~~----~~g~~~~~-~~~~~~------~~D~vi~~v   63 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR--RFPTL-VWNRTF--EKALRHQ----EEFGSEAV-PLERVA------EARVIFTCL   63 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT--TSCEE-EECSST--HHHHHHH----HHHCCEEC-CGGGGG------GCSEEEECC
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC--CCeEE-EEeCCH--HHHHHHH----HCCCcccC-HHHHHh------CCCEEEEeC
Confidence            579999997 9999999998876  78864 567642  2222222    11344444 666664      699999766


Q ss_pred             Cchh-HHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          115 DAST-VYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       115 ~p~~-~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      ++.. ..+.+...   ++.|..+|. .+.......++|.+..++.++.++-+|++
T Consensus        64 ~~~~~~~~v~~~l~~~l~~~~~vv~-~s~~~~~~~~~l~~~~~~~g~~~~~~p~~  117 (289)
T 2cvz_A           64 PTTREVYEVAEALYPYLREGTYWVD-ATSGEPEASRRLAERLREKGVTYLDAPVS  117 (289)
T ss_dssp             SSHHHHHHHHHHHTTTCCTTEEEEE-CSCCCHHHHHHHHHHHHTTTEEEEECCEE
T ss_pred             CChHHHHHHHHHHHhhCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCEEEEecCC
Confidence            6554 33333322   334555554 33455566677888777767777777754

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=98.28  E-value=1.6e-06  Score=77.90  Aligned_cols=91  Identities=14%  Similarity=0.118  Sum_probs=67.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH-HHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVID  112 (220)
                      +||+|+|++|..|+++++.+.++  |.++|+.+..+...|+.+. +.|    ....+ .+++ +.+      .++|+|+.
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~-~~~----~~~~~-~~~~~~~~------~~~Dvvf~   69 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA-FRG----QEIEV-EDAETADP------SGLDIALF   69 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE-ETT----EEEEE-EETTTSCC------TTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee-ecC----CceEE-EeCCHHHh------ccCCEEEE
Confidence            79999999999999999999988  8999999877766777665 222    12222 1222 122      27999996


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      ++......+.+..+++.|+.+|.-+.
T Consensus        70 a~~~~~s~~~a~~~~~~G~~vID~Sa   95 (344)
T 3tz6_A           70 SAGSAMSKVQAPRFAAAGVTVIDNSS   95 (344)
T ss_dssp             CSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             CCChHHHHHHHHHHHhCCCEEEECCC
Confidence            66666668899999999998886554

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.27  E-value=9e-06  Score=73.11  Aligned_cols=120  Identities=12%  Similarity=0.034  Sum_probs=73.6

Q ss_pred             CCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc
Q 027650           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      ++.+-.++||+|+|+ |+||..+++.+... +++++ ++|++.  ..+..+.    ..|+..++++++++...   ..+|
T Consensus        16 ~~~Mm~~mkIgiIGl-G~mG~~~A~~L~~~-G~~V~-v~dr~~--~~~~~l~----~~g~~~~~s~~e~~~~a---~~~D   83 (358)
T 4e21_A           16 ENLYFQSMQIGMIGL-GRMGADMVRRLRKG-GHECV-VYDLNV--NAVQALE----REGIAGARSIEEFCAKL---VKPR   83 (358)
T ss_dssp             ------CCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSCH--HHHHHHH----TTTCBCCSSHHHHHHHS---CSSC
T ss_pred             chhhhcCCEEEEECc-hHHHHHHHHHHHhC-CCEEE-EEeCCH--HHHHHHH----HCCCEEeCCHHHHHhcC---CCCC
Confidence            455555689999996 99999999998875 67765 567642  2233333    34677788999988631   2459


Q ss_pred             EEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 027650          109 VVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvi  161 (220)
                      +||.+.++..+.+.+...   ++.|.-+|. ++...+....++.+..++.|+.++=
T Consensus        84 vVi~~vp~~~v~~vl~~l~~~l~~g~iiId-~st~~~~~~~~~~~~l~~~g~~~vd  138 (358)
T 4e21_A           84 VVWLMVPAAVVDSMLQRMTPLLAANDIVID-GGNSHYQDDIRRADQMRAQGITYVD  138 (358)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTTCEEEE-CSSCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             EEEEeCCHHHHHHHHHHHHhhCCCCCEEEe-CCCCChHHHHHHHHHHHHCCCEEEe
Confidence            999666665444444433   334555554 4444455556677777777777663

>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*

Probab=98.27  E-value=2.1e-06  Score=77.72  Aligned_cols=116  Identities=9%  Similarity=0.104  Sum_probs=75.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc-----CC--------------HHH
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-----SD--------------LTM   96 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~-----~d--------------l~~   96 (220)
                      .||+|.|+||.+|+..++.+.++++++|+++....    +...+......++..++     .+              +.+
T Consensus         4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~----n~~~l~~q~~~f~p~~v~v~~~~~~~~~l~~~~~G~~~l~e   79 (376)
T 3a06_A            4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHS----NLELAFKIVKEFNVKNVAITGDVEFEDSSINVWKGSHSIEE   79 (376)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESS----CHHHHHHHHHHHTCCEEEECSSCCCCCSSSEEEESTTHHHH
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccC----CHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHccCHHHHHH
Confidence            68999999999999999999988889999995421    11111110001111111     12              245


Q ss_pred             HHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceE
Q 027650           97 VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC  159 (220)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~v  159 (220)
                      ++..    .++|+|+...+-.........|+++|+++.+..-...-..-+.+.++++++|+.+
T Consensus        80 l~~~----~~~D~Vv~AivG~aGL~ptlaAi~aGK~vaLANKEsLV~aG~li~~~a~~~g~~l  138 (376)
T 3a06_A           80 MLEA----LKPDITMVAVSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTEL  138 (376)
T ss_dssp             HHHH----HCCSEEEECCCSTTHHHHHHHHHHHCSEEEECCSHHHHHHHHHHHHHHHHHCCEE
T ss_pred             HhcC----CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEeChHHHHhhHHHHHHHHHHcCCEE
Confidence            5543    3799999777777889999999999999998332222233445666666555444

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.26  E-value=6.3e-06  Score=76.67  Aligned_cols=131  Identities=16%  Similarity=0.105  Sum_probs=87.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc----c---CCHHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----M---SDLTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~---~dl~~~l~~~~~~~~  106 (220)
                      .+.||+|+|+ |++|+.+++.+.+.++.++ .+++++.  ..+.++..   ..++..    .   +++.+++.      +
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V-~v~~R~~--~ka~~la~---~~~~~~~~~D~~d~~~l~~~l~------~   88 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINV-TVACRTL--ANAQALAK---PSGSKAISLDVTDDSALDKVLA------D   88 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEE-EEEESSH--HHHHHHHG---GGTCEEEECCTTCHHHHHHHHH------T
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeE-EEEECCH--HHHHHHHH---hcCCcEEEEecCCHHHHHHHHc------C
Confidence            3568999998 9999999999998878885 4556531  22223321   112211    1   24455554      7


Q ss_pred             ccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH--HHHHHHHHh
Q 027650          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISA  179 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~--ll~~~a~~~  179 (220)
                      +|+||.++++.........|++.|++++. ..-++++ ...|.+.|++.|+.++..-+|..|+.  +.+++..++
T Consensus        89 ~DvVIn~tp~~~~~~v~~a~l~~g~~vvd-~~~~~p~-~~~Ll~~Ak~aGv~~i~g~G~~PG~~~~~a~~li~q~  161 (467)
T 2axq_A           89 NDVVISLIPYTFHPNVVKSAIRTKTDVVT-SSYISPA-LRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTIDEV  161 (467)
T ss_dssp             SSEEEECSCGGGHHHHHHHHHHHTCEEEE-CSCCCHH-HHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHHHHHH
T ss_pred             CCEEEECCchhhhHHHHHHHHhcCCEEEE-eecCCHH-HHHHHHHHHHcCCEEEecCCcCccchHHHHHHHHHHH
Confidence            99999888776666778899999999985 3334554 46788888888998887777766653  234444444

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.23  E-value=1.9e-05  Score=68.44  Aligned_cols=114  Identities=14%  Similarity=0.074  Sum_probs=74.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +++||+|+|+ |+||..+++.+... ++++. ++|++.  ..+..+.    ..|+..+++++++.      . +|+||.+
T Consensus        14 ~~~~I~vIG~-G~mG~~~A~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~------~-aDvvi~~   77 (296)
T 3qha_A           14 EQLKLGYIGL-GNMGAPMATRMTEW-PGGVT-VYDIRI--EAMTPLA----EAGATLADSVADVA------A-ADLIHIT   77 (296)
T ss_dssp             -CCCEEEECC-STTHHHHHHHHTTS-TTCEE-EECSST--TTSHHHH----HTTCEECSSHHHHT------T-SSEEEEC
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHC-CCeEE-EEeCCH--HHHHHHH----HCCCEEcCCHHHHH------h-CCEEEEE
Confidence            3579999996 99999999998765 77765 457642  2223332    23667788999886      4 8999965


Q ss_pred             cCch-hHHHHHHHHH---HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          114 TDAS-TVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       114 T~p~-~~~~~~~~al---~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      .+.. .+.+.+...+   +.|.- |+-++...+...+++.+..++.++.++-+|-
T Consensus        78 vp~~~~~~~v~~~l~~~l~~g~i-vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv  131 (296)
T 3qha_A           78 VLDDAQVREVVGELAGHAKPGTV-IAIHSTISDTTAVELARDLKARDIHIVDAPV  131 (296)
T ss_dssp             CSSHHHHHHHHHHHHTTCCTTCE-EEECSCCCHHHHHHHHHHHGGGTCEEEECCE
T ss_pred             CCChHHHHHHHHHHHHhcCCCCE-EEEeCCCCHHHHHHHHHHHHHcCCEEEeCCC
Confidence            5533 3344444333   34544 4455556677777888877777777765553

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.20  E-value=1.8e-05  Score=68.47  Aligned_cols=113  Identities=9%  Similarity=0.088  Sum_probs=72.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc---EEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM---EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~---eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ++||+|+|+ |+||+.+++.+... ++   ++ .++|++.  ..+..+.   +.+|+.++.+..+++.      ++|+||
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~-g~~~~~V-~v~dr~~--~~~~~l~---~~~gi~~~~~~~~~~~------~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIAN-GYDPNRI-CVTNRSL--DKLDFFK---EKCGVHTTQDNRQGAL------NADVVV   68 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHT-TCCGGGE-EEECSSS--HHHHHHH---HTTCCEEESCHHHHHS------SCSEEE
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHC-CCCCCeE-EEEeCCH--HHHHHHH---HHcCCEEeCChHHHHh------cCCeEE
Confidence            479999997 99999999998865 34   44 4677642  2233333   1357788889988885      799999


Q ss_pred             EccCchhHHHHHHHHHH---CCCcEEEe-CCCCCHHHHHHHHHHhhhcCceEE-EcCCC
Q 027650          112 DFTDASTVYDNVKQATA---FGMRSVVY-VPHIQLETVSALSAFCDKASMGCL-IAPTL  165 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~---~G~~vVig-TtG~~~e~~~~L~~aA~~~~v~vv-iapNf  165 (220)
                      .+.+|....+.+.....   .+..+|+- +.|++.++   |.+.... +.+++ .-||.
T Consensus        69 lav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~---l~~~l~~-~~~vvr~mPn~  123 (280)
T 3tri_A           69 LAVKPHQIKMVCEELKDILSETKILVISLAVGVTTPL---IEKWLGK-ASRIVRAMPNT  123 (280)
T ss_dssp             ECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHH---HHHHHTC-CSSEEEEECCG
T ss_pred             EEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHHH---HHHHcCC-CCeEEEEecCC
Confidence            88888776665554432   23435554 45888654   4444332 23444 23664

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.20  E-value=8.1e-06  Score=68.96  Aligned_cols=105  Identities=17%  Similarity=0.131  Sum_probs=70.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+|+|+ |+||..+++.+... ++++.. +|+.........+.    ..|+.  +++++++.      ++|+||.+.+
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~-g~~V~~-~~~~~~~~~~~~~~----~~g~~--~~~~~~~~------~aDvvi~~v~   65 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSR-GVEVVT-SLEGRSPSTIERAR----TVGVT--ETSEEDVY------SCPVVISAVT   65 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHT-TCEEEE-CCTTCCHHHHHHHH----HHTCE--ECCHHHHH------TSSEEEECSC
T ss_pred             CeEEEEec-hHHHHHHHHHHHHC-CCeEEE-eCCccCHHHHHHHH----HCCCc--CCHHHHHh------cCCEEEEECC
Confidence            58999997 99999999998764 778776 55521111122222    12444  67777775      7999997777


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~  155 (220)
                      +....+.+......-.++|+-+++..++..++|.+...+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSS
T ss_pred             CHHHHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHHHhhC
Confidence            7666666655554433377777788877777788776653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.19  E-value=7.4e-06  Score=70.43  Aligned_cols=115  Identities=16%  Similarity=0.136  Sum_probs=76.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |+||+|+|+ |+||..+++.+.+. ++++. ++|++.  ..+..+.    ..|+..++++++++.      ++|+||.+.
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~~~~------~advvi~~v   65 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRA-GFDVT-VWNRNP--AKCAPLV----ALGARQASSPAEVCA------ACDITIAML   65 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHH-TCCEE-EECSSG--GGGHHHH----HHTCEECSCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHC-CCeEE-EEcCCH--HHHHHHH----HCCCeecCCHHHHHH------cCCEEEEEc
Confidence            679999996 99999999998865 67765 467642  2223332    235677889999986      689999655


Q ss_pred             Cch-hHHHHH---H---HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          115 DAS-TVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       115 ~p~-~~~~~~---~---~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      ++. .+.+.+   .   ..++.|.. |+-++...+...+++.+..++.|+.++-+|.+
T Consensus        66 ~~~~~~~~v~~~~~~l~~~l~~g~~-vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  122 (287)
T 3pdu_A           66 ADPAAAREVCFGANGVLEGIGGGRG-YIDMSTVDDETSTAIGAAVTARGGRFLEAPVS  122 (287)
T ss_dssp             SSHHHHHHHHHSTTCGGGTCCTTCE-EEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CCHHHHHHHHcCchhhhhcccCCCE-EEECCCCCHHHHHHHHHHHHHcCCEEEECCcc
Confidence            544 333333   1   22334544 44556667777788888877778877766654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.18  E-value=1.2e-05  Score=70.18  Aligned_cols=117  Identities=12%  Similarity=0.050  Sum_probs=76.3

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      +..++||+|+|+ |+||+.+++.+... ++++. ++|++.  ..+..+.    ..|+..++++++++.      ++|+||
T Consensus         6 ~~~~~~IgiIG~-G~mG~~~A~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~e~~~------~aDvVi   70 (306)
T 3l6d_A            6 ESFEFDVSVIGL-GAMGTIMAQVLLKQ-GKRVA-IWNRSP--GKAAALV----AAGAHLCESVKAALS------ASPATI   70 (306)
T ss_dssp             CCCSCSEEEECC-SHHHHHHHHHHHHT-TCCEE-EECSSH--HHHHHHH----HHTCEECSSHHHHHH------HSSEEE
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HCCCeecCCHHHHHh------cCCEEE
Confidence            445689999996 99999999998764 67766 467632  2222332    235667889999986      699999


Q ss_pred             EccCchh-HHHHHH----HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          112 DFTDAST-VYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       112 DfT~p~~-~~~~~~----~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      .+.++.. +.+.+.    ..+..|.-+| -++..+++..+++.+..++.|+.++-+|-
T Consensus        71 ~~vp~~~~~~~v~~~~~l~~~~~g~ivi-d~st~~~~~~~~l~~~~~~~g~~~vdapv  127 (306)
T 3l6d_A           71 FVLLDNHATHEVLGMPGVARALAHRTIV-DYTTNAQDEGLALQGLVNQAGGHYVKGMI  127 (306)
T ss_dssp             ECCSSHHHHHHHHTSTTHHHHTTTCEEE-ECCCCCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEeCCHHHHHHHhcccchhhccCCCEEE-ECCCCCHHHHHHHHHHHHHcCCeEEeccc
Confidence            6555443 333321    2234555555 45555566677787777777777775533

>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3

Probab=98.18  E-value=2.6e-05  Score=70.37  Aligned_cols=140  Identities=14%  Similarity=0.136  Sum_probs=89.5

Q ss_pred             CCCCCCCceEEEEcCCCHHHHHHHHHHHhcC----------------------CcEEEEEEec--CCCCcchhhhhcCCC
Q 027650           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKAR----------------------GMEVAGAIDS--HSVGEDIGMVCDMEQ   84 (220)
Q Consensus        29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~----------------------~~eLvg~vd~--~~~g~d~g~l~g~~~   84 (220)
                      ++....++||+|+|. |+.|+.++..+....                      ++++|+++|.  .+.|+++.+..-...
T Consensus         9 ~~~~~~~~rVaIVGv-GN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iVaafDId~~KVG~~l~~A~~~~~   87 (367)
T 1gr0_A            9 APEASTEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASE   87 (367)
T ss_dssp             -----CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTT
T ss_pred             CchhccCCCEEEECc-ChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEEEEEcCChHHHHHHhhCCEecCC
Confidence            344577899999998 999999999666544                      7899999994  456666543211100


Q ss_pred             CC-----Ccc----------------------------ccCCHHHHHhccccCCCccEEEEccCc---hhHHHHHHHHHH
Q 027650           85 PL-----EIP----------------------------VMSDLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATA  128 (220)
Q Consensus        85 ~~-----gv~----------------------------v~~dl~~~l~~~~~~~~~DVVIDfT~p---~~~~~~~~~al~  128 (220)
                      .+     .++                            ...|+.+.+.+    .+.||||.+-+.   .+..-++.+|++
T Consensus        88 n~~~~~~~v~~~~v~v~~g~~ldgia~~~~~~i~~s~~~~~Di~~~~~~----~~~dVvV~~lp~gs~~aS~~YA~Aal~  163 (367)
T 1gr0_A           88 NNTIKIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKE----AKVDVLVSYLPVGSEEADKFYAQCAID  163 (367)
T ss_dssp             CCCCCCSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHH----TTCSEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             CchhhhhcccccCceEccCCCCCchhhhhhhccccccchhhHHHHHHHH----hCCcEEEEeeeCCCcCHHHHHHHHHHH
Confidence            00     111                            12256566654    689999977432   233456788999


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc--HHHHHHHHH
Q 027650          129 FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQA  175 (220)
Q Consensus       129 ~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS--~Gv~ll~~~  175 (220)
                      .|++.|-++|-+... ...+.++++++|+|++= -.|=  .|..++...
T Consensus       164 ag~~fvN~~P~~~~~-~P~~~el~~~~g~pi~G-dD~Ksq~G~T~~k~~  210 (367)
T 1gr0_A          164 AGVAFVNALPVFIAS-DPVWAKKFTDARVPIVG-DDIKSQVGATITHRV  210 (367)
T ss_dssp             HTCEEEECSSCCSTT-SHHHHHHHHHHTCEEEE-SSBCCSSCHHHHHHH
T ss_pred             cCCceEecCCccccC-CHHHHHHHHHcCCCEec-cccccccCCChHHHH
Confidence            999999999965431 13478888888888662 3344  777766543

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.18  E-value=1.6e-05  Score=73.47  Aligned_cols=129  Identities=13%  Similarity=0.092  Sum_probs=83.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-cc-----c--cCCHHHHHhccccCCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-IP-----V--MSDLTMVLGSISQSKA  106 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g-v~-----v--~~dl~~~l~~~~~~~~  106 (220)
                      +.||+|+|+ |.||+.+++.+.+ .+.+ |.+++++.  ..+.++..   ..+ +.     +  .+++++++.      +
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~-~G~~-V~v~~R~~--~~a~~la~---~~~~~~~~~~Dv~d~~~l~~~l~------~   68 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTD-SGIK-VTVACRTL--ESAKKLSA---GVQHSTPISLDVNDDAALDAEVA------K   68 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHT-TTCE-EEEEESSH--HHHHHTTT---TCTTEEEEECCTTCHHHHHHHHT------T
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CcCE-EEEEECCH--HHHHHHHH---hcCCceEEEeecCCHHHHHHHHc------C
Confidence            468999995 9999999999886 5788 45566531  12222221   111 11     1  123445554      7


Q ss_pred             ccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH--HHHHHHHHh
Q 027650          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISA  179 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~--ll~~~a~~~  179 (220)
                      +|+||.++.+..+.+....+++.|++++.. .-..+ ....|.++|+++|+.++...+|..|..  +..+++.+.
T Consensus        69 ~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~-~~~~~-~~~~l~~aA~~aGv~~i~g~g~~pg~~~~~a~~li~q~  141 (450)
T 1ff9_A           69 HDLVISLIPYTFHATVIKSAIRQKKHVVTT-SYVSP-AMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEV  141 (450)
T ss_dssp             SSEEEECCC--CHHHHHHHHHHHTCEEEES-SCCCH-HHHHTHHHHHHTTCEEECSCBBTTBHHHHHHHHHHHHH
T ss_pred             CcEEEECCccccchHHHHHHHhCCCeEEEe-ecccH-HHHHHHHHHHHCCCeEEeCCCCcCchHHHHHHHHHHHh
Confidence            999998887666666778889999999864 23344 457788889999999887777766653  344555443

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=98.13  E-value=1.9e-05  Score=69.38  Aligned_cols=111  Identities=10%  Similarity=0.015  Sum_probs=73.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCC--C---cchhhhhcCCCCCCccccC-CHHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSV--G---EDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~--g---~d~g~l~g~~~~~gv~v~~-dl~~~l~~~~~~~~  106 (220)
                      +++||+|+|+ |+||..+++.+... + .++. ++|++..  .   .....+.    ..|+  ++ ++++++.      +
T Consensus        23 M~m~IgvIG~-G~mG~~lA~~L~~~-G~~~V~-~~dr~~~~~~~~~~~~~~~~----~~g~--~~~s~~e~~~------~   87 (317)
T 4ezb_A           23 MMTTIAFIGF-GEAAQSIAGGLGGR-NAARLA-AYDLRFNDPAASGALRARAA----ELGV--EPLDDVAGIA------C   87 (317)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTT-TCSEEE-EECGGGGCTTTHHHHHHHHH----HTTC--EEESSGGGGG------G
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHc-CCCeEE-EEeCCCccccchHHHHHHHH----HCCC--CCCCHHHHHh------c
Confidence            4689999996 99999999998865 6 7766 5675320  0   1111121    2344  55 7778775      6


Q ss_pred             ccEEEEccCchhHHHHHHHHHH---CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          107 RAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~---~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      +|+||.+.++....+.+.....   .| .+|+-+++..+...+++.+..++.|+..+
T Consensus        88 aDvVi~avp~~~~~~~~~~i~~~l~~~-~ivv~~st~~p~~~~~~~~~l~~~g~~~~  143 (317)
T 4ezb_A           88 ADVVLSLVVGAATKAVAASAAPHLSDE-AVFIDLNSVGPDTKALAAGAIATGKGSFV  143 (317)
T ss_dssp             CSEEEECCCGGGHHHHHHHHGGGCCTT-CEEEECCSCCHHHHHHHHHHHHTSSCEEE
T ss_pred             CCEEEEecCCHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            9999976666666666554433   34 35556667778888888887777666554

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=98.13  E-value=3.9e-06  Score=75.04  Aligned_cols=98  Identities=22%  Similarity=0.207  Sum_probs=64.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecC-------------CCCcchhhhhcCCC-----CCCccccC--C
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSH-------------SVGEDIGMVCDMEQ-----PLEIPVMS--D   93 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~-------------~~g~d~g~l~g~~~-----~~gv~v~~--d   93 (220)
                      +||+|+|+ |++|+.++|++.++  |++||+++.|..             ..|+-.+++.-.+.     ...+.++.  |
T Consensus         1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d   79 (332)
T 1hdg_O            1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (332)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence            58999999 99999999999998  999999998731             12221111100000     01234442  4


Q ss_pred             HHHHH-hccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           94 LTMVL-GSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        94 l~~~l-~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                      ++++. .+    .++|+|+++|......+.+...++.|.. +||--+
T Consensus        80 p~~l~w~~----~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~  122 (332)
T 1hdg_O           80 PSKLPWKD----LGVDFVIESTGVFRNREKAELHLQAGAKKVIITAP  122 (332)
T ss_dssp             GGGSCHHH----HTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hHHCcccc----cCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCC
Confidence            55441 11    1689999888877778999999999983 554433

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.11  E-value=3e-06  Score=72.87  Aligned_cols=111  Identities=15%  Similarity=0.119  Sum_probs=69.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |+||+|+|++|+||+.+++.+... +++++ ++|++.  .....+.    ..|+.+. ++.+++.      ++|+||.++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~-g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~~------~aDvVi~av   75 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDS-AHHLA-AIEIAP--EGRDRLQ----GMGIPLT-DGDGWID------EADVVVLAL   75 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHS-SSEEE-EECCSH--HHHHHHH----HTTCCCC-CSSGGGG------TCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-CCEEE-EEECCH--HHHHHHH----hcCCCcC-CHHHHhc------CCCEEEEcC
Confidence            579999997799999999998764 67877 567531  1222222    1233333 5566664      799999777


Q ss_pred             CchhHHHHHHHHH---HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCC
Q 027650          115 DASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTL  165 (220)
Q Consensus       115 ~p~~~~~~~~~al---~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNf  165 (220)
                      ++....+.+....   +.|.-+|..+++.+.+.   +.++  ..+..++ ..||+
T Consensus        76 ~~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~---l~~~--~~~~~~v~~~P~~  125 (286)
T 3c24_A           76 PDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAG---VMPE--RADITYFIGHPCH  125 (286)
T ss_dssp             CHHHHHHHHHHHGGGSCTTCEEEESCSHHHHHT---CSCC--CTTSEEEEEEECC
T ss_pred             CchHHHHHHHHHHHhCCCCCEEEECCCCchhHH---HHhh--hCCCeEEecCCCC
Confidence            7777666555443   34555665566664332   3332  2356777 66776

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.09  E-value=1.6e-05  Score=68.93  Aligned_cols=116  Identities=14%  Similarity=0.107  Sum_probs=74.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +++||+|+|+ |+||..+++.+.+. ++++. ++|++.  ..+..+.    ..|+.. ++++++++.      ++|+||.
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~~e~~~------~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRA-GLSTW-GADLNP--QACANLL----AEGACGAAASAREFAG------VVDALVI   70 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSCH--HHHHHHH----HTTCSEEESSSTTTTT------TCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHC-CCeEE-EEECCH--HHHHHHH----HcCCccccCCHHHHHh------cCCEEEE
Confidence            4579999996 99999999998864 77766 457532  2222332    234555 778888875      7999996


Q ss_pred             ccCchhHHHHHH-------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          113 FTDASTVYDNVK-------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       113 fT~p~~~~~~~~-------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      +.++....+.+.       ..++.|.-+| -++...+...+++.+..++.|+.++-+|-+
T Consensus        71 ~vp~~~~~~~v~~~~~~l~~~l~~g~ivv-~~st~~~~~~~~~~~~~~~~g~~~~~~pv~  129 (303)
T 3g0o_A           71 LVVNAAQVRQVLFGEDGVAHLMKPGSAVM-VSSTISSADAQEIAAALTALNLNMLDAPVS  129 (303)
T ss_dssp             CCSSHHHHHHHHC--CCCGGGSCTTCEEE-ECSCCCHHHHHHHHHHHHTTTCEEEECCEE
T ss_pred             ECCCHHHHHHHHhChhhHHhhCCCCCEEE-ecCCCCHHHHHHHHHHHHHcCCeEEeCCCC
Confidence            555443433332       2334555454 455566777778887777777776655543

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=98.09  E-value=3.3e-05  Score=67.73  Aligned_cols=114  Identities=16%  Similarity=0.142  Sum_probs=77.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .|.||+++|. |+||..+++.+.+. ++++. ++|++.  ..+..+.    ..|+...+++.++..      .+|+||-+
T Consensus         2 ~M~kIgfIGl-G~MG~~mA~~L~~~-G~~v~-v~dr~~--~~~~~l~----~~Ga~~a~s~~e~~~------~~dvv~~~   66 (300)
T 3obb_A            2 HMKQIAFIGL-GHMGAPMATNLLKA-GYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAVQ------GADVVISM   66 (300)
T ss_dssp             -CCEEEEECC-STTHHHHHHHHHHT-TCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHHT------TCSEEEEC
T ss_pred             CcCEEEEeee-hHHHHHHHHHHHhC-CCeEE-EEcCCH--HHHHHHH----HcCCEEcCCHHHHHh------cCCceeec
Confidence            4779999995 99999999999864 78876 577642  2233343    346778899999986      79998843


Q ss_pred             cC-chhHHHHHHH------HHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650          114 TD-ASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus       114 T~-p~~~~~~~~~------al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                      -+ ++.+.+.+..      .++.|. +||-++..++++..++.+.+++.|+..+=+|
T Consensus        67 l~~~~~v~~V~~~~~g~~~~~~~g~-iiId~sT~~p~~~~~~a~~~~~~G~~~lDaP  122 (300)
T 3obb_A           67 LPASQHVEGLYLDDDGLLAHIAPGT-LVLECSTIAPTSARKIHAAARERGLAMLDAP  122 (300)
T ss_dssp             CSCHHHHHHHHHSSSSSTTSCCC-C-EEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred             CCchHHHHHHHhchhhhhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCEEEecC
Confidence            22 2333333321      122233 5556666788899999999999999888665

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=98.06  E-value=5.9e-05  Score=65.86  Aligned_cols=115  Identities=14%  Similarity=0.146  Sum_probs=77.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .||+++|. |+||..+++.+.+. +++|+ ++|++.  .....+.    ..|+.+.+++.++..      .+|+||-+-+
T Consensus         6 ~kIgfIGL-G~MG~~mA~~L~~~-G~~V~-v~dr~~--~~~~~l~----~~G~~~~~s~~e~~~------~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLGL-GNLGTPIAEILLEA-GYELV-VWNRTA--SKAEPLT----KLGATVVENAIDAIT------PGGIVFSVLA   70 (297)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHT-TCEEE-EC---------CTTT----TTTCEECSSGGGGCC------TTCEEEECCS
T ss_pred             CcEEEEec-HHHHHHHHHHHHHC-CCeEE-EEeCCH--HHHHHHH----HcCCeEeCCHHHHHh------cCCceeeecc
Confidence            48999995 99999999999874 88876 467532  1222332    457788889999875      7999885443


Q ss_pred             chhH-HH----HHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          116 ASTV-YD----NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       116 p~~~-~~----~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      ++.. .+    .+...+..|. +||-.+..++++.+++.+.+++.|+..+=+|-+.
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~-iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsG  125 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDG-VHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFA  125 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEECCEEC
T ss_pred             chhhHHHHHHHHHHhhcCCCe-EEEECCCCChHHHHHHHHHHHhcCCceecCCcCC
Confidence            3332 22    2334445554 4455555678888999999999999988777543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.04  E-value=5.9e-06  Score=69.63  Aligned_cols=98  Identities=9%  Similarity=0.112  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc----EEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM----EVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~----eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      |+||+|+|+ |+||+.+++.+.+. ++    ++. ++|++.  ..+..+.   ..+|+.+++++++++.      ++|+|
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~-g~~~~~~V~-~~~r~~--~~~~~~~---~~~g~~~~~~~~e~~~------~aDvV   67 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINK-NIVSSNQII-CSDLNT--ANLKNAS---EKYGLTTTTDNNEVAK------NADIL   67 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHT-TSSCGGGEE-EECSCH--HHHHHHH---HHHCCEECSCHHHHHH------HCSEE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhC-CCCCCCeEE-EEeCCH--HHHHHHH---HHhCCEEeCChHHHHH------hCCEE
Confidence            579999996 99999999998764 44    554 567642  2222332   1246777889999886      69999


Q ss_pred             EEccCchhHHHHHHHHH---HCCCcEEEeCCCCCHHHHH
Q 027650          111 IDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVS  146 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al---~~G~~vVigTtG~~~e~~~  146 (220)
                      |.+++|....+.+....   +.|..+|.-+.|.+.++++
T Consensus        68 ilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~  106 (247)
T 3gt0_A           68 ILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTE  106 (247)
T ss_dssp             EECSCTTTHHHHC---CCSSCTTCEEEECSCCSCHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHH
Confidence            97787776666554432   3355455455688875443

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.03  E-value=2.3e-05  Score=68.86  Aligned_cols=100  Identities=11%  Similarity=0.055  Sum_probs=64.3

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCC----cEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARG----MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~----~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      -.+|||+|+|+ |.||..+++.+.+. +    .++. +++++.....+..+.    ..|+.+.++..+++.      ++|
T Consensus        20 ~~~mkI~iIG~-G~mG~ala~~L~~~-G~~~~~~V~-v~~r~~~~~~~~~l~----~~G~~~~~~~~e~~~------~aD   86 (322)
T 2izz_A           20 FQSMSVGFIGA-GQLAFALAKGFTAA-GVLAAHKIM-ASSPDMDLATVSALR----KMGVKLTPHNKETVQ------HSD   86 (322)
T ss_dssp             --CCCEEEESC-SHHHHHHHHHHHHT-TSSCGGGEE-EECSCTTSHHHHHHH----HHTCEEESCHHHHHH------HCS
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHC-CCCCcceEE-EECCCccHHHHHHHH----HcCCEEeCChHHHhc------cCC
Confidence            34579999997 99999999998764 3    5554 566642111233332    246677778888876      699


Q ss_pred             EEEEccCchhHHHHHHHHHH---CCCcEEEeCCCCCHHHH
Q 027650          109 VVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETV  145 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~---~G~~vVigTtG~~~e~~  145 (220)
                      +||.+..|....+.+.....   .+.-+|.-++|.+.+++
T Consensus        87 vVilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l  126 (322)
T 2izz_A           87 VLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSI  126 (322)
T ss_dssp             EEEECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHH
T ss_pred             EEEEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHH
Confidence            99977777766666654432   34445544468876543

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.02  E-value=3.3e-05  Score=66.13  Aligned_cols=112  Identities=12%  Similarity=0.150  Sum_probs=67.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchhhhhcCCCCCCc--cccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g~l~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |+||+|+|+ |+||+.+++.+.... +.++. ++|++.  .....+.    ..|+  ..+.++++++.      ++|+||
T Consensus         6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~~~------~aDvVi   71 (290)
T 3b1f_A            6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIV-GYNRSD--RSRDIAL----ERGIVDEATADFKVFAA------LADVII   71 (290)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEE-EECSSH--HHHHHHH----HTTSCSEEESCTTTTGG------GCSEEE
T ss_pred             cceEEEEee-CHHHHHHHHHHHhCCCCcEEE-EEcCCH--HHHHHHH----HcCCcccccCCHHHhhc------CCCEEE
Confidence            579999996 999999999887653 67765 566531  1122221    1233  34667777765      799999


Q ss_pred             EccCchhHHHHHHHHHHC---CCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          112 DFTDASTVYDNVKQATAF---GMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~---G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      .+++|....+.+......   .-.+|+-.++......+.|.+...+.++.++
T Consensus        72 lavp~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v  123 (290)
T 3b1f_A           72 LAVPIKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFV  123 (290)
T ss_dssp             ECSCHHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEE
T ss_pred             EcCCHHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEE
Confidence            777777766666655443   1235553444433334556665443244443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.94  E-value=0.00013  Score=67.34  Aligned_cols=117  Identities=16%  Similarity=0.226  Sum_probs=71.7

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CC-------------CCCCccccCCHHHHH
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-ME-------------QPLEIPVMSDLTMVL   98 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~-------------~~~gv~v~~dl~~~l   98 (220)
                      +.+|||+|+|+ |.||..++..+.+  +.++++ +|++.  ..+..+.. ..             ...++..++|+++++
T Consensus        34 ~~~mkIaVIGl-G~mG~~lA~~La~--G~~V~~-~D~~~--~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~  107 (432)
T 3pid_A           34 SEFMKITISGT-GYVGLSNGVLIAQ--NHEVVA-LDIVQ--AKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY  107 (432)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHT--TSEEEE-ECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHc--CCeEEE-EecCH--HHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH
Confidence            45689999996 9999999998765  888875 66531  11111110 00             012466788998888


Q ss_pred             hccccCCCccEEEEccCch-----------hHH---HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650           99 GSISQSKARAVVIDFTDAS-----------TVY---DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~-----------~~~---~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      .      ++|+||.+++..           .+.   +.+.. ++.|.-+|..+| ..+...+++.+...+  ..+.++|-
T Consensus       108 ~------~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~ST-v~pgtt~~l~~~l~~--~~v~~sPe  177 (432)
T 3pid_A          108 R------NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKST-IPVGFTRDIKERLGI--DNVIFSPE  177 (432)
T ss_dssp             T------TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSC-CCTTHHHHHHHHHTC--CCEEECCC
T ss_pred             h------CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCC-CChHHHHHHHHHHhh--ccEeecCc
Confidence            5      799999765432           122   22333 566766665444 444445556655555  46788998


Q ss_pred             C
Q 027650          165 L  165 (220)
Q Consensus       165 f  165 (220)
                      |
T Consensus       178 ~  178 (432)
T 3pid_A          178 F  178 (432)
T ss_dssp             C
T ss_pred             c
Confidence            7

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=97.93  E-value=7e-06  Score=73.74  Aligned_cols=100  Identities=26%  Similarity=0.228  Sum_probs=63.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-------------CCCCcchhhhhcCCC-----CCCccccC--CH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-------------HSVGEDIGMVCDMEQ-----PLEIPVMS--DL   94 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-------------~~~g~d~g~l~g~~~-----~~gv~v~~--dl   94 (220)
                      ++||+|+|+ ||+||.+.|++.+++++++|++-|.             ...|+--+.+.--+.     ...+.++.  |+
T Consensus         2 ~ikV~InGf-GrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~dp   80 (342)
T 2ep7_A            2 AIKVGINGF-GRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKDP   80 (342)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             ceEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCCh
Confidence            479999998 9999999999998899999999874             111211111000000     01233443  44


Q ss_pred             HHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                      +++-..   +.++|+|+++|......+.+..+++.|.. ||+-.|
T Consensus        81 ~~~~w~---~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisap  122 (342)
T 2ep7_A           81 SQIPWG---DLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAP  122 (342)
T ss_dssp             GGCCHH---HHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSC
T ss_pred             hhCCcc---ccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCC
Confidence            333110   01789999888777788899999999975 455444

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=97.92  E-value=1.9e-05  Score=70.79  Aligned_cols=97  Identities=22%  Similarity=0.208  Sum_probs=63.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEec-------------CCCCcchhhh--hc----CCCCCCcccc-
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDS-------------HSVGEDIGMV--CD----MEQPLEIPVM-   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~-------------~~~g~d~g~l--~g----~~~~~gv~v~-   91 (220)
                      |+||+|+|+ ||+||.+.|++.++   +++++|++-|.             ...|+--+++  -|    .. ...+.++ 
T Consensus         1 ~ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~-g~~i~v~~   78 (335)
T 1obf_O            1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVN-GDKIRVDA   78 (335)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEET-TEEEEEEC
T ss_pred             CcEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEEC-CEEEEEEE
Confidence            579999998 99999999999888   89999999883             1111110100  00    00 1123344 


Q ss_pred             -CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEe
Q 027650           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVY  136 (220)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVig  136 (220)
                       .|++++-.   .+.++|+|+++|......+.+...++.|.. +|+.
T Consensus        79 ~~dp~~~~w---~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviS  122 (335)
T 1obf_O           79 NRNPAQLPW---GALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIIS  122 (335)
T ss_dssp             CSCGGGSCT---TTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEES
T ss_pred             cCCcccCCc---cccCCCEEEEccCccccHHHHHHHHHcCCCEEEEC
Confidence             24454422   013799999888777778889999999975 5554

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.89  E-value=1.1e-06  Score=75.45  Aligned_cols=92  Identities=8%  Similarity=0.015  Sum_probs=51.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ||||+|+|+ |+||+.+++.+...  ++++.++|++.  ..+..+..   .+++ .+.++++++.      ++|+||.++
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~--~~v~~v~~~~~--~~~~~~~~---~~g~-~~~~~~~~~~------~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR--YEIGYILSRSI--DRARNLAE---VYGG-KAATLEKHPE------LNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHH---HTCC-CCCSSCCCCC---------CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc--CcEEEEEeCCH--HHHHHHHH---HcCC-ccCCHHHHHh------cCCEEEEeC
Confidence            579999997 99999999988765  77767787642  12222221   2344 5667776654      689999777


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCC-CCCH
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVP-HIQL  142 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTt-G~~~  142 (220)
                      +|....+.+......|. +|+-++ +++.
T Consensus        67 ~~~~~~~v~~~l~~~~~-ivi~~s~~~~~   94 (276)
T 2i76_A           67 PDRYIKTVANHLNLGDA-VLVHCSGFLSS   94 (276)
T ss_dssp             CTTTHHHHHTTTCCSSC-CEEECCSSSCG
T ss_pred             ChHHHHHHHHHhccCCC-EEEECCCCCcH
Confidence            77766555543333344 444444 4443

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.89  E-value=5.2e-05  Score=63.78  Aligned_cols=93  Identities=10%  Similarity=0.052  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ++||+|+|+ |.||+.+++.+.....   .++ .++|++.. +           .|+.++.++++++.      ++|+||
T Consensus         4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v-~~~~~~~~-~-----------~g~~~~~~~~~~~~------~~D~vi   63 (262)
T 2rcy_A            4 NIKLGFMGL-GQMGSALAHGIANANIIKKENL-FYYGPSKK-N-----------TTLNYMSSNEELAR------HCDIIV   63 (262)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGE-EEECSSCC-S-----------SSSEECSCHHHHHH------HCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeE-EEEeCCcc-c-----------CceEEeCCHHHHHh------cCCEEE
Confidence            479999997 9999999998876421   454 45676421 1           24566778888876      699999


Q ss_pred             EccCchhHHHHHHHHHH--CCCcEEEeCCCCCHHHHHH
Q 027650          112 DFTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSA  147 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~--~G~~vVigTtG~~~e~~~~  147 (220)
                      .+.+|..+.+.+.....  .+..+|+-+.|++.+.+++
T Consensus        64 ~~v~~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~  101 (262)
T 2rcy_A           64 CAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE  101 (262)
T ss_dssp             ECSCTTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH
T ss_pred             EEeCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH
Confidence            77777766666654332  2445666666888764433

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=97.88  E-value=2.2e-05  Score=70.16  Aligned_cols=99  Identities=27%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-------------CCCCcchhhhhcCCC-----CCCccccC--CHH
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-------------HSVGEDIGMVCDMEQ-----PLEIPVMS--DLT   95 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-------------~~~g~d~g~l~g~~~-----~~gv~v~~--dl~   95 (220)
                      +||+|+|+ |++|+.+.|++.++ +++++++-|.             ...|+-.+++.-.++     ...++++.  |++
T Consensus         1 ikVgInG~-G~IGr~vlr~l~~~-~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   78 (331)
T 2g82_O            1 MKVGINGF-GRIGRQVFRILHSR-GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK   78 (331)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChh
Confidence            59999998 99999999999888 9999998763             112321111100000     11344442  454


Q ss_pred             HHHhccccCCCccEEEEccCchhHHHHHHHHHHCCC-cEEEeCCC
Q 027650           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVPH  139 (220)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigTtG  139 (220)
                      ++-..   +.++|+|+++|......+.+...++.|. .+||..|+
T Consensus        79 ~l~w~---~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps  120 (331)
T 2g82_O           79 EIPWA---EAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA  120 (331)
T ss_dssp             GSCTT---TTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             hCccc---ccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCC
Confidence            44210   1268999988887888899999999996 36665553

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=97.88  E-value=9e-05  Score=56.66  Aligned_cols=36  Identities=22%  Similarity=0.292  Sum_probs=32.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      .+.||+|+|+ |..|+.+++.+.+.++++++|++|.+
T Consensus         3 ~~~~vlIiGa-G~~g~~l~~~l~~~~g~~vvg~~d~~   38 (141)
T 3nkl_A            3 AKKKVLIYGA-GSAGLQLANMLRQGKEFHPIAFIDDD   38 (141)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEECSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCcEEEEEEECC
Confidence            3468999997 99999999999988899999999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.87  E-value=0.00014  Score=67.48  Aligned_cols=123  Identities=9%  Similarity=0.041  Sum_probs=75.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ++||+|+|+ |.||+.++..+... ++++ .++|++.  ..+..+.. .....++..+.|+++++..+   .++|+||.+
T Consensus         2 ~m~IgvIG~-G~mG~~lA~~La~~-G~~V-~v~dr~~--~~~~~l~~~~~~g~gi~~~~~~~e~v~~l---~~aDvVila   73 (482)
T 2pgd_A            2 QADIALIGL-AVMGQNLILNMNDH-GFVV-CAFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSKL---KKPRRIILL   73 (482)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHT-TCCE-EEECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHHB---CSSCEEEEC
T ss_pred             CCeEEEECh-HHHHHHHHHHHHHC-CCeE-EEEeCCH--HHHHHHHhccccCCCeEEeCCHHHHHhhc---cCCCEEEEe
Confidence            368999996 99999999998764 6775 4677642  22223321 00004567788999887411   279999966


Q ss_pred             cCch-hHHHHHH---HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          114 TDAS-TVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       114 T~p~-~~~~~~~---~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      .++. .+.+.+.   ..++.|..+|..+++... +..++.+..++.++.++-.|++.
T Consensus        74 Vp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~-~~~~l~~~l~~~g~~~v~~pv~g  129 (482)
T 2pgd_A           74 VKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYR-DTMRRCRDLKDKGILFVGSGVSG  129 (482)
T ss_dssp             SCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEEEEES
T ss_pred             CCChHHHHHHHHHHHhhcCCCCEEEECCCCCHH-HHHHHHHHHHHcCCeEeCCCCCC
Confidence            6553 3444443   334567766666666643 33455665555677766556543

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.87  E-value=4e-05  Score=62.43  Aligned_cols=118  Identities=11%  Similarity=0.063  Sum_probs=69.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCC-CCCCccccCCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME-QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~---g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |||+|+|++|+||+.+++.+.+. +.++.. ++++.  .....+.   +.. ....+. .+++++++.      ++|+||
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~-g~~V~~-~~r~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~D~Vi   69 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATL-GHEIVV-GSRRE--EKAEAKAAEYRRIAGDASIT-GMKNEDAAE------ACDIAV   69 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT-TCEEEE-EESSH--HHHHHHHHHHHHHHSSCCEE-EEEHHHHHH------HCSEEE
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHC-CCEEEE-EeCCH--HHHHHHHHHhccccccCCCC-hhhHHHHHh------cCCEEE
Confidence            58999996699999999998764 678765 56531  1111111   100 001233 467777775      699999


Q ss_pred             EccCchhHHHHHHH---HHHCCCcEEEeCCCCCH-----------HHHHHHHHHhhhcCceEEEc-CCCcH
Q 027650          112 DFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQL-----------ETVSALSAFCDKASMGCLIA-PTLSI  167 (220)
Q Consensus       112 DfT~p~~~~~~~~~---al~~G~~vVigTtG~~~-----------e~~~~L~~aA~~~~v~vvia-pNfS~  167 (220)
                      .++++..+.+.+..   .+ .+..+|.-++|++.           ...++|.+...  +..++-+ ||.+.
T Consensus        70 ~~~~~~~~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~  137 (212)
T 1jay_A           70 LTIPWEHAIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPA  137 (212)
T ss_dssp             ECSCHHHHHHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCH
T ss_pred             EeCChhhHHHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHH
Confidence            88877665554433   23 47767766667762           22455555543  3566655 44433

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.86  E-value=0.00018  Score=59.50  Aligned_cols=97  Identities=14%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             CCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEE
Q 027650           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      ++..++||+|+|+ |+||+.+++.+... +.++. +++++.  ..+..+.    ..|+.++ ++++++.      ++|+|
T Consensus        24 ~~~~~~~I~iiG~-G~~G~~la~~l~~~-g~~V~-~~~r~~--~~~~~~~----~~g~~~~-~~~~~~~------~~DvV   87 (215)
T 2vns_A           24 VPDEAPKVGILGS-GDFARSLATRLVGS-GFKVV-VGSRNP--KRTARLF----PSAAQVT-FQEEAVS------SPEVI   87 (215)
T ss_dssp             -----CCEEEECC-SHHHHHHHHHHHHT-TCCEE-EEESSH--HHHHHHS----BTTSEEE-EHHHHTT------SCSEE
T ss_pred             CCCCCCEEEEEcc-CHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HcCCcee-cHHHHHh------CCCEE
Confidence            4445689999995 99999999998764 66765 466531  1222232    2255544 7777765      79999


Q ss_pred             EEccCchhHHHH--HHHHHHCCCcEEEeCCCCCHHH
Q 027650          111 IDFTDASTVYDN--VKQATAFGMRSVVYVPHIQLET  144 (220)
Q Consensus       111 IDfT~p~~~~~~--~~~al~~G~~vVigTtG~~~e~  144 (220)
                      |.++.+....+.  +...+ .|..+|.-++|.+.+.
T Consensus        88 i~av~~~~~~~v~~l~~~~-~~~~vv~~s~g~~~~~  122 (215)
T 2vns_A           88 FVAVFREHYSSLCSLSDQL-AGKILVDVSNPTEQEH  122 (215)
T ss_dssp             EECSCGGGSGGGGGGHHHH-TTCEEEECCCCCHHHH
T ss_pred             EECCChHHHHHHHHHHHhc-CCCEEEEeCCCccccc
Confidence            977766433222  22333 6776666666776543

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.84  E-value=0.00012  Score=67.97  Aligned_cols=122  Identities=11%  Similarity=0.082  Sum_probs=75.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ++||+|+|+ |.||+.+++.+... ++++ .++|++.  ..+..+.......++..+.|+++++..+   .++|+||.++
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~~-G~~V-~v~dr~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~l---~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVESR-GYTV-AIYNRTT--SKTEEVFKEHQDKNLVFTKTLEEFVGSL---EKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHHT-TCCE-EEECSSH--HHHHHHHHHTTTSCEEECSSHHHHHHTB---CSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHhC-CCEE-EEEcCCH--HHHHHHHHhCcCCCeEEeCCHHHHHhhc---cCCCEEEEEc
Confidence            479999996 99999999998864 6775 4677631  1222222100012567788999987611   2499999666


Q ss_pred             Cch-hHHHHHHH---HHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          115 DAS-TVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       115 ~p~-~~~~~~~~---al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      ++. .+.+.+..   .++.|..+|..+++.. ....++.+..++.++.++-.|++
T Consensus        77 p~~~~v~~vl~~l~~~l~~g~iiId~s~~~~-~~~~~l~~~l~~~g~~~v~~pv~  130 (474)
T 2iz1_A           77 QAGAATDATIKSLLPLLDIGDILIDGGNTHF-PDTMRRNAELADSGINFIGTGVS  130 (474)
T ss_dssp             CTTHHHHHHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHTTTSSCEEEEEEEC
T ss_pred             cCchHHHHHHHHHHhhCCCCCEEEECCCCCH-HHHHHHHHHHHHCCCeEECCCCC
Confidence            653 34444433   3445776665555653 34456666666667776655654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.82  E-value=0.00022  Score=65.80  Aligned_cols=122  Identities=10%  Similarity=0.146  Sum_probs=72.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCC---------------CCCCccccCCHHHHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DME---------------QPLEIPVMSDLTMVL   98 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~-g~~---------------~~~gv~v~~dl~~~l   98 (220)
                      +|||+|+|+ |+||..++..+.+. +.+++ ++|++.  ..+..+. |..               ...++..++|+++++
T Consensus         2 ~mkI~VIG~-G~vG~~lA~~La~~-G~~V~-~~D~~~--~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~   76 (450)
T 3gg2_A            2 SLDIAVVGI-GYVGLVSATCFAEL-GANVR-CIDTDR--NKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAV   76 (450)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSCH--HHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHG
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhc-CCEEE-EEECCH--HHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHH
Confidence            379999996 99999999988764 78887 466531  1111111 000               012356678999887


Q ss_pred             hccccCCCccEEEEccCch----------hHHHH---HHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhh--------cCc
Q 027650           99 GSISQSKARAVVIDFTDAS----------TVYDN---VKQATAFGMRSVVYVPHIQLETVSALSAFCDK--------ASM  157 (220)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~----------~~~~~---~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~--------~~v  157 (220)
                      .      ++|+||.+.++.          .+.+.   +...++.|.-+|..+| ..+...+++.+..++        ...
T Consensus        77 ~------~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST-v~pgt~~~l~~~l~~~~~~~~~~~d~  149 (450)
T 3gg2_A           77 P------EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST-VPVGSYRLIRKAIQEELDKREVLIDF  149 (450)
T ss_dssp             G------GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC-CCTTHHHHHHHHHHHHHHHTTCCCCE
T ss_pred             h------cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee-CCCcchHHHHHHHHHhccccCcCcce
Confidence            6      799998655332          33333   3344556766766654 333333333333222        236


Q ss_pred             eEEEcCCCcHH
Q 027650          158 GCLIAPTLSIG  168 (220)
Q Consensus       158 ~vviapNfS~G  168 (220)
                      +++.+|.|.--
T Consensus       150 ~v~~~Pe~a~e  160 (450)
T 3gg2_A          150 DIASNPEFLKE  160 (450)
T ss_dssp             EEEECCCCCCT
T ss_pred             eEEechhhhcc
Confidence            88899987644

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=97.81  E-value=2.2e-05  Score=69.96  Aligned_cols=90  Identities=17%  Similarity=0.101  Sum_probs=60.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC-CHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVID  112 (220)
                      |||+|+||+|++|+.+++.+.  .+|..+|+.+.+....|+.+. +.|    ..+.+.+ +.++       - ++|+||+
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~-~~g----~~i~v~~~~~~~-------~-~~DvV~~   67 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLA-FRG----EEIPVEPLPEGP-------L-PVDLVLA   67 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEE-ETT----EEEEEEECCSSC-------C-CCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEE-EcC----ceEEEEeCChhh-------c-CCCEEEE
Confidence            589999999999999999998  678888875544333343322 111    1223322 2111       1 5899996


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      ++......+.+..+++.|..+|.-+.
T Consensus        68 a~g~~~s~~~a~~~~~~G~~vId~s~   93 (331)
T 2yv3_A           68 SAGGGISRAKALVWAEGGALVVDNSS   93 (331)
T ss_dssp             CSHHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             CCCccchHHHHHHHHHCCCEEEECCC
Confidence            66666778999999999997776543

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.81  E-value=4.4e-05  Score=67.67  Aligned_cols=120  Identities=15%  Similarity=0.233  Sum_probs=71.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----------cCCCCCCccccCCHHHHHhccccCCC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DMEQPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~----------g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      ||+|+|+ |.||..++..+.. .+.++. +++++.  ..+..+.          +..-..++.+++++++++.      +
T Consensus        17 kI~iIG~-G~mG~~la~~L~~-~G~~V~-~~~r~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~   85 (366)
T 1evy_A           17 KAVVFGS-GAFGTALAMVLSK-KCREVC-VWHMNE--EEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN------G   85 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TEEEEE-EECSCH--HHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT------T
T ss_pred             eEEEECC-CHHHHHHHHHHHh-CCCEEE-EEECCH--HHHHHHHHcCcccccccccccccceeeeCCHHHHHc------C
Confidence            9999997 9999999998875 366665 456431  1111111          0000113556678888775      7


Q ss_pred             ccEEEEccCchhHHHHHH-------HHHHC-CCcEEEeCCCCCHHHHHHHHHHhhhc-C---ceEEEcCCCcH
Q 027650          107 RAVVIDFTDASTVYDNVK-------QATAF-GMRSVVYVPHIQLETVSALSAFCDKA-S---MGCLIAPTLSI  167 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~-------~al~~-G~~vVigTtG~~~e~~~~L~~aA~~~-~---v~vviapNfS~  167 (220)
                      +|+||.+.++..+.+.+.       ..+.. |..+|.-+.|++.+..+.+.+...+. +   ..++..||++.
T Consensus        86 aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~  158 (366)
T 1evy_A           86 AEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAI  158 (366)
T ss_dssp             CSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHH
T ss_pred             CCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHH
Confidence            999996666654444433       33555 77777655577664433333333321 2   45677789864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.78  E-value=0.00014  Score=67.76  Aligned_cols=123  Identities=9%  Similarity=0.033  Sum_probs=74.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +++||+|+|+ |.||+.+++.+... ++++. +++++.  ..+.++.......|+..+.|+++++..+   .++|+||-+
T Consensus        14 ~~~~IgvIGl-G~MG~~lA~~La~~-G~~V~-v~~r~~--~~~~~l~~~~~~~gi~~~~s~~e~v~~l---~~aDvVil~   85 (480)
T 2zyd_A           14 SKQQIGVVGM-AVMGRNLALNIESR-GYTVS-IFNRSR--EKTEEVIAENPGKKLVPYYTVKEFVESL---ETPRRILLM   85 (480)
T ss_dssp             -CBSEEEECC-SHHHHHHHHHHHTT-TCCEE-EECSSH--HHHHHHHHHSTTSCEEECSSHHHHHHTB---CSSCEEEEC
T ss_pred             CCCeEEEEcc-HHHHHHHHHHHHhC-CCeEE-EEeCCH--HHHHHHHhhCCCCCeEEeCCHHHHHhCC---CCCCEEEEE
Confidence            4568999996 99999999998864 77765 566531  1222222100002677788999987611   149999965


Q ss_pred             cCch-hHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          114 TDAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       114 T~p~-~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      .++. .+.+.+...   ++.|.-+|..+++... ...++.+..++.++.++-+|.+
T Consensus        86 Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~-~t~~l~~~l~~~g~~~v~~pv~  140 (480)
T 2zyd_A           86 VKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQ-DTIRRNRELSAEGFNFIGTGVS  140 (480)
T ss_dssp             SCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHH-HHHHHHHHHHHCCCCeeCCccc
Confidence            5553 445555443   3346666666666643 3445566666667776655553

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.78  E-value=0.00022  Score=62.63  Aligned_cols=102  Identities=16%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCc--cccCCHHH-HHhccccCCCccE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTM-VLGSISQSKARAV  109 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~l~g~~~~~gv--~v~~dl~~-~l~~~~~~~~~DV  109 (220)
                      ++||+|+|+ |.||..+++.+... ++  +++ ++|++.  ..+....    ..|+  ..++++++ ++.      ++|+
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~-G~~~~V~-~~dr~~--~~~~~a~----~~G~~~~~~~~~~~~~~~------~aDv   97 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRS-GFKGKIY-GYDINP--ESISKAV----DLGIIDEGTTSIAKVEDF------SPDF   97 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHT-TCCSEEE-EECSCH--HHHHHHH----HTTSCSEEESCTTGGGGG------CCSE
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhC-CCCCEEE-EEECCH--HHHHHHH----HCCCcchhcCCHHHHhhc------cCCE
Confidence            379999996 99999999998764 55  665 467642  1122222    2233  34678887 665      7999


Q ss_pred             EEEccCchhHHHHHHHHHH---CCCcEEEeCCCCCHHHHHHHHHHh
Q 027650          110 VIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFC  152 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~---~G~~vVigTtG~~~e~~~~L~~aA  152 (220)
                      ||.++++....+.+.....   .|. +|+-.++......+.+.+..
T Consensus        98 Vilavp~~~~~~vl~~l~~~l~~~~-iv~d~~Svk~~~~~~~~~~l  142 (314)
T 3ggo_A           98 VMLSSPVRTFREIAKKLSYILSEDA-TVTDQGSVKGKLVYDLENIL  142 (314)
T ss_dssp             EEECSCGGGHHHHHHHHHHHSCTTC-EEEECCSCCTHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHhhccCCCc-EEEECCCCcHHHHHHHHHhc
Confidence            9978777776665554433   343 55545544434455555543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.76  E-value=8.9e-05  Score=68.90  Aligned_cols=121  Identities=10%  Similarity=0.052  Sum_probs=72.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cCC-CCCCccccCCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DME-QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~---g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |||+|+|+ |.||+.+++.+... ++++ .++|++.  ..+..+.   |.. ...++..+.|+++++..+   .++|+||
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~-G~~V-~v~dr~~--~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l---~~aDvVi   73 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEK-GFKV-AVFNRTY--SKSEEFMKANASAPFAGNLKAFETMEAFAASL---KKPRKAL   73 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHT-TCCE-EEECSSH--HHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB---CSSCEEE
T ss_pred             CEEEEECh-HHHHHHHHHHHHHC-CCEE-EEEeCCH--HHHHHHHHhcCCCCCCCCeEEECCHHHHHhcc---cCCCEEE
Confidence            58999996 99999999998764 6775 4677531  1122222   100 011256678999887521   2599999


Q ss_pred             EccCch-hHHHHHH---HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          112 DFTDAS-TVYDNVK---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       112 DfT~p~-~~~~~~~---~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      .+.++. .+.+.+.   ..++.|..+|..+++.. ...+++.+..++.++..+-+|.+
T Consensus        74 laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~-~~~~~l~~~l~~~g~~~v~~pv~  130 (478)
T 1pgj_A           74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHF-KDQGRRAQQLEAAGLRFLGMGIS  130 (478)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCH-HHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             EecCChHHHHHHHHHHHhhCCCCCEEEECCCCCh-HHHHHHHHHHHHCCCeEEEeecc
Confidence            666553 3444433   34456776666556653 33455556666566665545554

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=97.75  E-value=0.00012  Score=65.45  Aligned_cols=100  Identities=23%  Similarity=0.264  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchhhhhcCCC-----CCCcccc--CC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIGMVCDMEQ-----PLEIPVM--SD   93 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------------~~g~d~g~l~g~~~-----~~gv~v~--~d   93 (220)
                      |+||+|+|. ||+||.+.|++.+.+++|+|++-|+.              -.|+--+.+.--++     ...+.++  .|
T Consensus         1 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~d   79 (332)
T 3pym_A            1 MVRVAINGF-GRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERD   79 (332)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CeEEEEECC-CcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEeecc
Confidence            689999996 99999999999888999999998751              01221111100000     0123443  34


Q ss_pred             HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                      ++++-.   .+.++|+|++.|-.....+.+...++.|.. |||..|
T Consensus        80 p~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsap  122 (332)
T 3pym_A           80 PANLPW---GSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAP  122 (332)
T ss_dssp             GGGSCT---TTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSC
T ss_pred             cccCCc---cccCccEEEEecccccCHHHHHHHHHcCCCEEEECCC
Confidence            555422   113799999888777788899999999974 555444

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.73  E-value=2.1e-05  Score=70.20  Aligned_cols=141  Identities=18%  Similarity=0.217  Sum_probs=73.3

Q ss_pred             eeecccccccccCCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhh
Q 027650            9 HCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGM   78 (220)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-------~eLvg~vd~~~~--g~-d~g~   78 (220)
                      |-.-||.-.|+--.+-        .+|+||+|+|+ |.||..++..+.+. +       .++. +++++..  ++ .+..
T Consensus         3 ~~~~~~~~~~~~~~~~--------~~~~kI~iIGa-G~mG~alA~~L~~~-G~~~~~~~~~V~-~~~r~~~~~~~~~~~~   71 (375)
T 1yj8_A            3 HHHHHHMYRNLFDKLK--------DGPLKISILGS-GNWASAISKVVGTN-AKNNYLFENEVR-MWIRDEFVNGERMVDI   71 (375)
T ss_dssp             -------CCSHHHHHH--------HSCBCEEEECC-SHHHHHHHHHHHHH-HHHCTTBCSCEE-EECCSCC---CCHHHH
T ss_pred             cchhHHHHHHHHhcCc--------cCCCEEEEECc-CHHHHHHHHHHHHc-CCccCCCCCeEE-EEECChhhhhHHHHHH
Confidence            3345676666532211        14679999997 99999999988754 3       5554 4565321  00 1211


Q ss_pred             hh----------cCCCCCCccccCCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHH-------CCCcEEEeCCCCC
Q 027650           79 VC----------DMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-------FGMRSVVYVPHIQ  141 (220)
Q Consensus        79 l~----------g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~-------~G~~vVigTtG~~  141 (220)
                      +.          |..-+.++.+++|+++++.      ++|+||-+.++....+.+.....       .+..+|.-+.|++
T Consensus        72 l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~~------~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A           72 INNKHENTKYLKGVPLPHNIVAHSDLASVIN------DADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             HHHHCBCTTTSTTCBCCTTEEEESSTHHHHT------TCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred             HHhcCcccccCCcccCcCCeEEECCHHHHHc------CCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence            11          1000124566788888775      79999966555544455443322       2455665555776


Q ss_pred             HH-----HHH-HHHHHhhhcCceEEEcCCCcH
Q 027650          142 LE-----TVS-ALSAFCDKASMGCLIAPTLSI  167 (220)
Q Consensus       142 ~e-----~~~-~L~~aA~~~~v~vviapNfS~  167 (220)
                      .+     ... .+.+..- ...+++..||++.
T Consensus       146 ~~~~~~~~l~~~l~~~~~-~~~~v~~gp~~a~  176 (375)
T 1yj8_A          146 VKKNQMKLCSNYISDFLN-IPCSALSGANIAM  176 (375)
T ss_dssp             EETTEEECHHHHHHHHSS-SCEEEEECSCCHH
T ss_pred             cCCccccCHHHHHHHHcC-CCEEEEeCCchHH
Confidence            41     222 2222211 2356677799865

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.73  E-value=3.3e-05  Score=67.82  Aligned_cols=122  Identities=11%  Similarity=0.174  Sum_probs=70.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC-----CCCCccccCCHHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-----QPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~--g~~-----~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      +.+||+|+|+ |.||..++..+.+. +.++. +++++.  ..+..+.  |..     ...++.+++++++ +.      +
T Consensus        13 ~~~kI~iIG~-G~mG~ala~~L~~~-G~~V~-~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~------~   80 (335)
T 1z82_A           13 MEMRFFVLGA-GSWGTVFAQMLHEN-GEEVI-LWARRK--EIVDLINVSHTSPYVEESKITVRATNDLEE-IK------K   80 (335)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSSH--HHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CC------T
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHhC-CCeEE-EEeCCH--HHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hc------C
Confidence            4579999997 99999999988764 66764 566531  1122221  100     0013566778877 53      7


Q ss_pred             ccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhh---cCceEEEcCCCcH
Q 027650          107 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK---ASMGCLIAPTLSI  167 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~---~~v~vviapNfS~  167 (220)
                      +|+||-+..+..+.+.+......|..+|.-+.|++.++.+.+.+...+   ...+++..||+..
T Consensus        81 aDvVil~vk~~~~~~v~~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~  144 (335)
T 1z82_A           81 EDILVIAIPVQYIREHLLRLPVKPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAE  144 (335)
T ss_dssp             TEEEEECSCGGGHHHHHTTCSSCCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHH
T ss_pred             CCEEEEECCHHHHHHHHHHhCcCCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHH
Confidence            999996666655555543322245566665557765433333333322   1256677898764

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.73  E-value=0.0001  Score=59.96  Aligned_cols=93  Identities=14%  Similarity=0.189  Sum_probs=54.4

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCccccCCHHHHHhccccCCCccEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..|+||.|.|++|.+|+.+++.+.+. +.+++++..+........  .+.. -..++.-.+++++++.      ++|+||
T Consensus         2 ~~m~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~------~~d~vi   72 (227)
T 3dhn_A            2 EKVKKIVLIGASGFVGSALLNEALNR-GFEVTAVVRHPEKIKIEN--EHLKVKKADVSSLDEVCEVCK------GADAVI   72 (227)
T ss_dssp             -CCCEEEEETCCHHHHHHHHHHHHTT-TCEEEEECSCGGGCCCCC--TTEEEECCCTTCHHHHHHHHT------TCSEEE
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHC-CCEEEEEEcCcccchhcc--CceEEEEecCCCHHHHHHHhc------CCCEEE
Confidence            34789999999999999999999875 688887654311001000  0000 0011111233455554      799999


Q ss_pred             EccCch------------hHHHHHHHHHHCCC-cEE
Q 027650          112 DFTDAS------------TVYDNVKQATAFGM-RSV  134 (220)
Q Consensus       112 DfT~p~------------~~~~~~~~al~~G~-~vV  134 (220)
                      .+..+.            .....+..+.+.|+ ++|
T Consensus        73 ~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v  108 (227)
T 3dhn_A           73 SAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFL  108 (227)
T ss_dssp             ECCCC------CCSHHHHHHHHHHHHHHHTTCSEEE
T ss_pred             EeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            876442            23455677777776 444

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.72  E-value=0.00012  Score=59.74  Aligned_cols=91  Identities=15%  Similarity=0.054  Sum_probs=53.6

Q ss_pred             CCce-EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-------cCCHHHHHhccccCC
Q 027650           34 SNIK-VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSK  105 (220)
Q Consensus        34 ~~ik-V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-------~~dl~~~l~~~~~~~  105 (220)
                      .|+| |.|.|++|.+|+.+++.+.+..+.+++++..+..  ..+.++...  ..++.+       .++++++++      
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~--~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~------   72 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK--TRIPPEIID--HERVTVIEGSFQNPGXLEQAVT------   72 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH--HHSCHHHHT--STTEEEEECCTTCHHHHHHHHT------
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc--ccchhhccC--CCceEEEECCCCCHHHHHHHHc------
Confidence            3556 9999999999999999998557899887654311  011222100  111111       223445554      


Q ss_pred             CccEEEEccCchh--HHHHHHHHHHCCC-cEE
Q 027650          106 ARAVVIDFTDAST--VYDNVKQATAFGM-RSV  134 (220)
Q Consensus       106 ~~DVVIDfT~p~~--~~~~~~~al~~G~-~vV  134 (220)
                      ++|+||....+..  ....+..+.+.|. ++|
T Consensus        73 ~~d~vv~~ag~~n~~~~~~~~~~~~~~~~~iv  104 (221)
T 3r6d_A           73 NAEVVFVGAMESGSDMASIVKALSRXNIRRVI  104 (221)
T ss_dssp             TCSEEEESCCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEcCCCCChhHHHHHHHHHhcCCCeEE
Confidence            7999997664311  3444566667775 344

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.70  E-value=0.00012  Score=63.21  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=26.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      |.||+|+|+ |.||..++..+... +++++ ++|++
T Consensus        15 ~~~I~VIG~-G~mG~~iA~~la~~-G~~V~-~~d~~   47 (302)
T 1f0y_A           15 VKHVTVIGG-GLMGAGIAQVAAAT-GHTVV-LVDQT   47 (302)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCeEE-EEECC
Confidence            568999997 99999999988764 78876 56753

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.70  E-value=0.00032  Score=59.62  Aligned_cols=104  Identities=16%  Similarity=0.143  Sum_probs=61.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCCCCCCcc--ccCCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      |+||+|+|+ |+||..+++.+... +.  +++ ++|++.  .....+.    ..|+.  .++++++++.     .++|+|
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~-g~~~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~~~~~~~-----~~aDvV   66 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRS-GFKGKIY-GYDINP--ESISKAV----DLGIIDEGTTSIAKVED-----FSPDFV   66 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHT-TCCSEEE-EECSCH--HHHHHHH----HTTSCSEEESCGGGGGG-----TCCSEE
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhc-CCCcEEE-EEeCCH--HHHHHHH----HCCCcccccCCHHHHhc-----CCCCEE
Confidence            579999996 99999999998764 44  655 466531  1122221    12332  3567777663     168999


Q ss_pred             EEccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhh
Q 027650          111 IDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCD  153 (220)
Q Consensus       111 IDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~  153 (220)
                      |.+++|....+.+...   ++.+. +|+-..+......+.+.+...
T Consensus        67 ilavp~~~~~~v~~~l~~~l~~~~-iv~~~~~~~~~~~~~l~~~l~  111 (281)
T 2g5c_A           67 MLSSPVRTFREIAKKLSYILSEDA-TVTDQGSVKGKLVYDLENILG  111 (281)
T ss_dssp             EECSCHHHHHHHHHHHHHHSCTTC-EEEECCSCCTHHHHHHHHHHG
T ss_pred             EEcCCHHHHHHHHHHHHhhCCCCc-EEEECCCCcHHHHHHHHHhcc
Confidence            9787777666655443   33454 444343333334455555443

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=97.69  E-value=0.00015  Score=64.84  Aligned_cols=100  Identities=26%  Similarity=0.312  Sum_probs=65.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------CCCcchhhhh--c----CCCCCCcccc--C
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------SVGEDIGMVC--D----MEQPLEIPVM--S   92 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~~g~d~g~l~--g----~~~~~gv~v~--~   92 (220)
                      +++||+|+|. ||+||.+.|++.+.+++|+|++-|..             -.|+--+++.  +    .. ...+.++  .
T Consensus         3 m~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~in-Gk~I~v~~e~   80 (338)
T 3lvf_P            3 MAVKVAINGF-GRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVN-GKEVKSFSEP   80 (338)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEET-TEEEEEECCS
T ss_pred             ccEEEEEECC-CcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEEC-CEEEEEEEec
Confidence            4589999996 99999999999988999999998721             0122111110  0    00 0123443  3


Q ss_pred             CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                      |++++-.   .+.++|+|++.|-.....+.+...++.|.. |||..|
T Consensus        81 dp~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISap  124 (338)
T 3lvf_P           81 DASKLPW---KDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAP  124 (338)
T ss_dssp             CGGGSCT---TTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSC
T ss_pred             ccccCCc---cccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCC
Confidence            5555422   113799999888777788899999999975 555444

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.69  E-value=0.00012  Score=61.94  Aligned_cols=120  Identities=8%  Similarity=0.052  Sum_probs=71.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc----cCC---HHHHHhccccCCCcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARA  108 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~D  108 (220)
                      |||.|+|++|.+|+.+++.+.+.++.+++++..+..   ....+.    ..++.+    .+|   +++++.      ++|
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~---~~~~~~----~~~v~~~~~D~~d~~~l~~~~~------~~d   67 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVE---KVPDDW----RGKVSVRQLDYFNQESMVEAFK------GMD   67 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGG---GSCGGG----BTTBEEEECCTTCHHHHHHHTT------TCS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHH---HHHHhh----hCCCEEEEcCCCCHHHHHHHHh------CCC
Confidence            589999999999999999988766899998775421   111111    112222    223   444453      799


Q ss_pred             EEEEccCc--------hhHHHHHHHHHHCCCc-EE-EeCCCC------C-HHHHHHHHHHhhhcCceEE-EcCCCcHH
Q 027650          109 VVIDFTDA--------STVYDNVKQATAFGMR-SV-VYVPHI------Q-LETVSALSAFCDKASMGCL-IAPTLSIG  168 (220)
Q Consensus       109 VVIDfT~p--------~~~~~~~~~al~~G~~-vV-igTtG~------~-~e~~~~L~~aA~~~~v~vv-iapNfS~G  168 (220)
                      +||.++.+        ......+..|.++|+. +| +++.|-      . ......+++..++.|+++. +-|++-.|
T Consensus        68 ~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~~~~~~~~~~~~~~~~~e~~~~~~g~~~~ilrp~~~~~  145 (289)
T 3e48_A           68 TVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYADQHNNPFHMSPYFGYASRLLSTSGIDYTYVRMAMYMD  145 (289)
T ss_dssp             EEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESCCSTTCCSTTHHHHHHHHHHHHHHCCEEEEEEECEEST
T ss_pred             EEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccCCCCCCCCccchhHHHHHHHHHHcCCCEEEEecccccc
Confidence            99987643        2334566788888864 44 222221      1 1223355666666777765 34554333

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.67  E-value=0.00032  Score=59.49  Aligned_cols=99  Identities=12%  Similarity=0.171  Sum_probs=63.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc--cccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      |||+|+|+ |+||+.+++.+... ++++++ +|++.  ..+..+.    ..|+  .++++++++ .      ++|+||.+
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~-g~~V~~-~~~~~--~~~~~~~----~~g~~~~~~~~~~~~-~------~~D~vi~a   64 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRR-GHYLIG-VSRQQ--STCEKAV----ERQLVDEAGQDLSLL-Q------TAKIIFLC   64 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSCH--HHHHHHH----HTTSCSEEESCGGGG-T------TCSEEEEC
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHC-CCEEEE-EECCH--HHHHHHH----hCCCCccccCCHHHh-C------CCCEEEEE
Confidence            58999996 99999999988764 677654 56531  1222222    1233  246778777 5      79999977


Q ss_pred             cCchhHHHHHHHHHH---CCCcEEEeCCCCCHHHHHHHHHH
Q 027650          114 TDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAF  151 (220)
Q Consensus       114 T~p~~~~~~~~~al~---~G~~vVigTtG~~~e~~~~L~~a  151 (220)
                      ++|..+.+.+.....   .+. +|+-+.+.+....+.+.+.
T Consensus        65 v~~~~~~~~~~~l~~~~~~~~-~vv~~~~~~~~~~~~~~~~  104 (279)
T 2f1k_A           65 TPIQLILPTLEKLIPHLSPTA-IVTDVASVKTAIAEPASQL  104 (279)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTC-EEEECCSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCC-EEEECCCCcHHHHHHHHHH
Confidence            777766666654433   344 4444556666555555554

>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*

Probab=97.66  E-value=7.1e-05  Score=67.24  Aligned_cols=101  Identities=22%  Similarity=0.192  Sum_probs=63.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-------------C-CCcchhhh--hc--CC-CCCCccccC--
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-------------S-VGEDIGMV--CD--ME-QPLEIPVMS--   92 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-------------~-~g~d~g~l--~g--~~-~~~gv~v~~--   92 (220)
                      .++||+|+|. ||+||.+.|++.+++++|||++-|+.             . .|+--+.+  -+  +. ....+.++.  
T Consensus        10 ~~~kv~INGf-GrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~~~~   88 (345)
T 2b4r_O           10 AATKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEK   88 (345)
T ss_dssp             -CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCS
T ss_pred             hheEEEEeCC-chHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEEcCCEEEECCEEEEEEEcC
Confidence            4589999995 99999999999999999999998831             0 11110110  00  00 001233332  


Q ss_pred             CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           93 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                      |++++-..   +.++|+|+++|......+.+...++.|.. |||-.|
T Consensus        89 dp~~~~w~---~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsap  132 (345)
T 2b4r_O           89 DPSQIPWG---KCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAP  132 (345)
T ss_dssp             SGGGCCHH---HHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             CcccCccc---ccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCC
Confidence            44433110   01789999888777778888899999975 566444

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.66  E-value=0.00048  Score=63.64  Aligned_cols=125  Identities=12%  Similarity=0.162  Sum_probs=75.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CC---------------CCCCccccCCHHHH
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-ME---------------QPLEIPVMSDLTMV   97 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~---------------~~~gv~v~~dl~~~   97 (220)
                      ...||+|+|. |+||..++..+.+. +.++++ +|++.  ..+..+.. ..               ...++..++|++++
T Consensus         7 ~~~~~~vIGl-G~vG~~~A~~La~~-G~~V~~-~D~~~--~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea   81 (446)
T 4a7p_A            7 GSVRIAMIGT-GYVGLVSGACFSDF-GHEVVC-VDKDA--RKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEG   81 (446)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSCS--TTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHH
T ss_pred             CceEEEEEcC-CHHHHHHHHHHHHC-CCEEEE-EeCCH--HHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHH
Confidence            3479999996 99999999988764 888875 56532  11222211 00               01235667899888


Q ss_pred             HhccccCCCccEEEEc--cCch---------hHHHHHHH---HHHCCCcEEEeCCCCCHHHHHHHHHHhhh----cCceE
Q 027650           98 LGSISQSKARAVVIDF--TDAS---------TVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDK----ASMGC  159 (220)
Q Consensus        98 l~~~~~~~~~DVVIDf--T~p~---------~~~~~~~~---al~~G~~vVigTtG~~~e~~~~L~~aA~~----~~v~v  159 (220)
                      +.      ++|++|.+  |+++         .+.+.++.   .++.|.-+|..+ +..+...+++.+..++    ...++
T Consensus        82 ~~------~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgtt~~l~~~l~e~~~~~d~~v  154 (446)
T 4a7p_A           82 VK------DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVGTGDEVERIIAEVAPNSGAKV  154 (446)
T ss_dssp             HT------TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTTHHHHHHHHHHHHSTTSCCEE
T ss_pred             Hh------cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCchHHHHHHHHHHHhCCCCCceE
Confidence            85      79998865  3332         23333333   344566666544 4444444455444443    35899


Q ss_pred             EEcCCCcHHHH
Q 027650          160 LIAPTLSIGSI  170 (220)
Q Consensus       160 viapNfS~Gv~  170 (220)
                      +.+|.|.--..
T Consensus       155 ~~~Pe~a~eG~  165 (446)
T 4a7p_A          155 VSNPEFLREGA  165 (446)
T ss_dssp             EECCCCCCTTS
T ss_pred             EeCcccccccc
Confidence            99999875443

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.63  E-value=0.0006  Score=63.73  Aligned_cols=119  Identities=11%  Similarity=0.030  Sum_probs=73.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-CCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .||+|+|+ |.||+.+++.+... +++++ ++|++.  ..+..+.. .....|+..+.++++++..+   .++|+||-..
T Consensus        11 ~~IgvIGl-G~MG~~lA~~La~~-G~~V~-v~dr~~--~~~~~l~~~~~~~~gi~~~~s~~e~v~~l---~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIGL-AVMGQNLILNAADH-GFTVC-AYNRTQ--SKVDHFLANEAKGKSIIGATSIEDFISKL---KRPRKVMLLV   82 (497)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHT-TCCEE-EECSSS--HHHHHHHHTTTTTSSEECCSSHHHHHHTS---CSSCEEEECC
T ss_pred             CCEEEEee-HHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHHcccccCCCeEEeCCHHHHHhcC---CCCCEEEEEc
Confidence            48999996 99999999998865 77765 677642  22233321 10004677788999987621   1499999655


Q ss_pred             Cch-hHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650          115 DAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus       115 ~p~-~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                      ++. .+.+.+...   ++.|.-+|..+++.. ....++.+..++.|+.++-.|
T Consensus        83 p~~~~v~~vl~~l~~~l~~g~iIId~s~~~~-~~~~~l~~~l~~~g~~~v~~p  134 (497)
T 2p4q_A           83 KAGAPVDALINQIVPLLEKGDIIIDGGNSHF-PDSNRRYEELKKKGILFVGSG  134 (497)
T ss_dssp             CSSHHHHHHHHHHGGGCCTTCEEEECSCCCH-HHHHHHHHHHHHTTCEEEEEE
T ss_pred             CChHHHHHHHHHHHHhCCCCCEEEECCCCCh-hHHHHHHHHHHHcCCceeCCC
Confidence            553 444554433   334666666666653 444556666666677766444

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.62  E-value=0.00011  Score=64.63  Aligned_cols=123  Identities=12%  Similarity=0.122  Sum_probs=69.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC-------cEEEEEEecCCC--Cc-chhhhh----------cCCCCCCccccCCH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG-------MEVAGAIDSHSV--GE-DIGMVC----------DMEQPLEIPVMSDL   94 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-------~eLvg~vd~~~~--g~-d~g~l~----------g~~~~~gv~v~~dl   94 (220)
                      ++||+|+|+ |.||..++..+.+. +       .++. +++++..  ++ ....+.          +..-..++..++|+
T Consensus         8 ~mkI~iIG~-G~mG~~~a~~l~~~-g~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1x0v_A            8 SKKVCIVGS-GNWGSAIAKIVGGN-AAQLAQFDPRVT-MWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDV   84 (354)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHH-HHHCTTEEEEEE-EECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhc-CCcccCCCCeEE-EEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCH
Confidence            369999997 99999999988764 3       5554 5665321  00 111111          10001234556788


Q ss_pred             HHHHhccccCCCccEEEEccCchhHHHHHHHHH---HCCCcEEEeCCCCCH-----HHH-HHHHHHhhhcCceEEEcCCC
Q 027650           95 TMVLGSISQSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQL-----ETV-SALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTtG~~~-----e~~-~~L~~aA~~~~v~vviapNf  165 (220)
                      ++++.      ++|+||.++++....+.+....   ..+..+|.-+.|++.     +.. +.+.+..- ...+++..||+
T Consensus        85 ~~~~~------~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~v~~gp~~  157 (354)
T 1x0v_A           85 VQAAE------DADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG-IPMSVLMGANI  157 (354)
T ss_dssp             HHHHT------TCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT-CCEEEEECSCC
T ss_pred             HHHHc------CCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC-CCEEEEECCCc
Confidence            88775      7999996666655555544432   235556665667752     122 22332211 12566677988


Q ss_pred             cH
Q 027650          166 SI  167 (220)
Q Consensus       166 S~  167 (220)
                      +.
T Consensus       158 a~  159 (354)
T 1x0v_A          158 AS  159 (354)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=97.59  E-value=0.00014  Score=65.25  Aligned_cols=101  Identities=22%  Similarity=0.210  Sum_probs=65.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhhcCCC-----CCCcccc--CC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVCDMEQ-----PLEIPVM--SD   93 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~g~l~g~~~-----~~gv~v~--~d   93 (220)
                      .|+||+|+|. ||+||.+.|++.+.+++|+|++-|+..             .|+--+.+.--++     ...+.++  .|
T Consensus         3 ~~~kv~INGf-GrIGr~v~Ra~~~~~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~d   81 (345)
T 4dib_A            3 AMTRVAINGF-GRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNRD   81 (345)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTCSSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSC
T ss_pred             ccEEEEEECC-CcHHHHHHHHHHhCCCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEeecCC
Confidence            4799999996 999999999998888999999987410             1111111000000     0123443  34


Q ss_pred             HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                      ++++-.   .+.++|+|++.|-.....+.+...++.|.. |||..|
T Consensus        82 p~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISap  124 (345)
T 4dib_A           82 PKELPW---TDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAP  124 (345)
T ss_dssp             GGGSCT---TTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hhhCCc---cccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCC
Confidence            555422   113799999888777778889999999974 555444

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=97.59  E-value=0.00086  Score=62.26  Aligned_cols=72  Identities=14%  Similarity=0.141  Sum_probs=45.9

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhc-CC--------------CCCCccccCCHHH
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCD-ME--------------QPLEIPVMSDLTM   96 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g-~~--------------~~~gv~v~~dl~~   96 (220)
                      .+||||+|+|+ |.||..++..+.+. ++.++++ +|++.  ..+..+.. ..              ...++..++|+.+
T Consensus         7 ~~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~-~D~~~--~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~   82 (481)
T 2o3j_A            7 GKVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTV-VDMNT--AKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPK   82 (481)
T ss_dssp             CCCCEEEEECC-STTHHHHHHHHHHHCTTSEEEE-ECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEE-EECCH--HHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHH
Confidence            34689999996 99999999988875 4788776 56421  11111110 00              0113456778877


Q ss_pred             HHhccccCCCccEEEEcc
Q 027650           97 VLGSISQSKARAVVIDFT  114 (220)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT  114 (220)
                      ++.      ++|+||.+.
T Consensus        83 ~~~------~aDvvii~V   94 (481)
T 2o3j_A           83 AIA------EADLIFISV   94 (481)
T ss_dssp             HHH------HCSEEEECC
T ss_pred             Hhh------cCCEEEEec
Confidence            775      699998663

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.56  E-value=0.00064  Score=61.96  Aligned_cols=130  Identities=12%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             CCCCCceEEEEcCCCHHHHHHHHHHHhc----CCc--EEEEEEecCC--CCcch-----------hhhhcCCCCCCcccc
Q 027650           31 PPQSNIKVIINGAVKEIGRAAVIAVTKA----RGM--EVAGAIDSHS--VGEDI-----------GMVCDMEQPLEIPVM   91 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~--eLvg~vd~~~--~g~d~-----------g~l~g~~~~~gv~v~   91 (220)
                      ....++||+|+|+ |.+|.+++..+...    +..  .-|-.+.++.  .++..           .-+.|..-+.++.++
T Consensus        30 ~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t  108 (391)
T 4fgw_A           30 AAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVAN  108 (391)
T ss_dssp             ---CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEE
T ss_pred             ccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEe
Confidence            3455689999997 99999999988753    111  1244454321  11111           112233223467788


Q ss_pred             CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHH---HHCCCcEEEeCCCCCHHH-----H-HHHHHHhhhcCceEEE
Q 027650           92 SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQA---TAFGMRSVVYVPHIQLET-----V-SALSAFCDKASMGCLI  161 (220)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~a---l~~G~~vVigTtG~~~e~-----~-~~L~~aA~~~~v~vvi  161 (220)
                      +|+++++.      ++|+|| +..|... .+.+...   +..+.++|..+-|+....     . +.|.+.- ...+.++-
T Consensus       109 ~dl~~al~------~ad~ii-~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~-~~~~~vLs  180 (391)
T 4fgw_A          109 PDLIDSVK------DVDIIV-FNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEEL-GIQCGALS  180 (391)
T ss_dssp             SCHHHHHT------TCSEEE-ECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHH-CCEEEEEE
T ss_pred             CCHHHHHh------cCCEEE-EECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHh-Cccceecc
Confidence            99999996      799988 6655554 4444433   456777888777874211     1 2222221 12244556


Q ss_pred             cCCCcHHH
Q 027650          162 APTLSIGS  169 (220)
Q Consensus       162 apNfS~Gv  169 (220)
                      -|||+--+
T Consensus       181 GPs~A~EV  188 (391)
T 4fgw_A          181 GANIATEV  188 (391)
T ss_dssp             CSCCHHHH
T ss_pred             CCchHHHh
Confidence            69998777

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.52  E-value=0.0013  Score=61.53  Aligned_cols=121  Identities=11%  Similarity=0.085  Sum_probs=71.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .|+||+|+|+ |+||..+++.+... +++++ ++|++.  ..+..+...+ ....+..+.+++++...+   .++|+||-
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~-G~~V~-v~dr~~--~~~~~l~~~g~~g~~i~~~~s~~e~v~~l---~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDH-GFVVC-AFNRTV--SKVDDFLANEAKGTKVVGAQSLKEMVSKL---KKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHT-TCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHTB---CSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHHhcccCCCceeccCCHHHHHhhc---cCCCEEEE
Confidence            4689999996 99999999998875 77766 567642  2233332110 011233468899987621   25999886


Q ss_pred             ccCch-hHHHHHHH---HHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650          113 FTDAS-TVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus       113 fT~p~-~~~~~~~~---al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                      ..++. .+.+.+..   .++.|.-+|.++++...+ ..++.+..++.|+..+=+|
T Consensus        75 ~Vp~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~-t~~~~~~l~~~Gi~fvd~p  128 (484)
T 4gwg_A           75 LVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRD-TTRRCRDLKAKGILFVGSG  128 (484)
T ss_dssp             CSCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHH-HHHHHHHHHHTTCEEEEEE
T ss_pred             ecCChHHHHHHHHHHHHhcCCCCEEEEcCCCCchH-HHHHHHHHHhhccccccCC
Confidence            55553 33344433   344566666666655333 3444455555677655433

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.52  E-value=0.00025  Score=57.61  Aligned_cols=86  Identities=7%  Similarity=0.183  Sum_probs=53.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc----cCC-HHHHHhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD-LTMVLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~~d-l~~~l~~~~~~~~~DVV  110 (220)
                      |||.|.|++|.+|+.+++.+.+. +.+++++..+..   ....+.      ++.+    ..| .+++...+   .++|+|
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~-g~~V~~~~R~~~---~~~~~~------~~~~~~~D~~d~~~~~~~~~---~~~d~v   67 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTT-DYQIYAGARKVE---QVPQYN------NVKAVHFDVDWTPEEMAKQL---HGMDAI   67 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTS-SCEEEEEESSGG---GSCCCT------TEEEEECCTTSCHHHHHTTT---TTCSEE
T ss_pred             CeEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCcc---chhhcC------CceEEEecccCCHHHHHHHH---cCCCEE
Confidence            58999999999999999998864 789888765321   111111      1111    123 33332211   379999


Q ss_pred             EEccCch----------hHHHHHHHHHHCCCc-EE
Q 027650          111 IDFTDAS----------TVYDNVKQATAFGMR-SV  134 (220)
Q Consensus       111 IDfT~p~----------~~~~~~~~al~~G~~-vV  134 (220)
                      |.+....          .....++.+.+.|+. +|
T Consensus        68 i~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv  102 (219)
T 3dqp_A           68 INVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFI  102 (219)
T ss_dssp             EECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEE
T ss_pred             EECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEE
Confidence            9875422          245667778888864 44

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.52  E-value=2e-05  Score=69.17  Aligned_cols=111  Identities=14%  Similarity=0.053  Sum_probs=68.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..++|+|+|+ |.||+.+++.+....+++-+.++|++.  ..+.++..   ..+  +.+++++++++.      ++|+||
T Consensus       134 ~~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr~~--~~~~~l~~---~~~~~~~~~~~~~e~v~------~aDiVi  201 (312)
T 2i99_A          134 SSEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNRTK--ENAEKFAD---TVQGEVRVCSSVQEAVA------GADVII  201 (312)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECSSH--HHHHHHHH---HSSSCCEECSSHHHHHT------TCSEEE
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHH---HhhCCeEEeCCHHHHHh------cCCEEE
Confidence            3469999997 999999999988765676677888642  22233331   223  566789999886      799999


Q ss_pred             EccCchhHHHHHH-HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 027650          112 DFTDASTVYDNVK-QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (220)
Q Consensus       112 DfT~p~~~~~~~~-~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvi  161 (220)
                      -+|+ .. .+.+. ..++.|.+++.-.+ .+++. .++.+.+.+.+. +++
T Consensus       202 ~atp-~~-~~v~~~~~l~~g~~vi~~g~-~~p~~-~el~~~~~~~g~-~~v  247 (312)
T 2i99_A          202 TVTL-AT-EPILFGEWVKPGAHINAVGA-SRPDW-RELDDELMKEAV-LYV  247 (312)
T ss_dssp             ECCC-CS-SCCBCGGGSCTTCEEEECCC-CSTTC-CSBCHHHHHHSE-EEE
T ss_pred             EEeC-CC-CcccCHHHcCCCcEEEeCCC-CCCCc-eeccHHHHhcCE-EEE
Confidence            6554 22 22221 45678888876322 22222 334444444443 444

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.52  E-value=0.00013  Score=61.36  Aligned_cols=100  Identities=14%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |||+|+|+ |+||+.+++.+.+. + .++ .++|++.  ..+..+..   .+|+.++.++++++       ++|+||.++
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~-g~~~v-~~~~r~~--~~~~~~~~---~~g~~~~~~~~~~~-------~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQ-GGYRI-YIANRGA--EKRERLEK---ELGVETSATLPELH-------SDDVLILAV   65 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-CSCEE-EEECSSH--HHHHHHHH---HTCCEEESSCCCCC-------TTSEEEECS
T ss_pred             CEEEEECc-hHHHHHHHHHHHHC-CCCeE-EEECCCH--HHHHHHHH---hcCCEEeCCHHHHh-------cCCEEEEEe
Confidence            58999997 99999999988764 4 554 4677531  22222221   23566666665543       489999777


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhh
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD  153 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~  153 (220)
                      +|....+.+......+..+|.-+.|++.+   .|.+...
T Consensus        66 ~~~~~~~v~~~l~~~~~ivv~~~~g~~~~---~l~~~~~  101 (263)
T 1yqg_A           66 KPQDMEAACKNIRTNGALVLSVAAGLSVG---TLSRYLG  101 (263)
T ss_dssp             CHHHHHHHHTTCCCTTCEEEECCTTCCHH---HHHHHTT
T ss_pred             CchhHHHHHHHhccCCCEEEEecCCCCHH---HHHHHcC
Confidence            75555444432221244444433688863   4555543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.51  E-value=0.00085  Score=56.39  Aligned_cols=93  Identities=14%  Similarity=0.115  Sum_probs=57.6

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC---cc---------hhhhhcCCCCCCccccCCHHHHHh
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG---ED---------IGMVCDMEQPLEIPVMSDLTMVLG   99 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g---~d---------~g~l~g~~~~~gv~v~~dl~~~l~   99 (220)
                      +..++||+|+|+ |+||..+++.+... +.++.. +|++..-   +.         ..++..   ..+...+.++++++.
T Consensus        16 ~~~~~kIgiIG~-G~mG~alA~~L~~~-G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~~   89 (245)
T 3dtt_A           16 YFQGMKIAVLGT-GTVGRTMAGALADL-GHEVTI-GTRDPKATLARAEPDAMGAPPFSQWLP---EHPHVHLAAFADVAA   89 (245)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHT-TCEEEE-EESCHHHHHTCC-------CCHHHHGG---GSTTCEEEEHHHHHH
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHC-CCEEEE-EeCChhhhhhhhhhhhhcchhhhHHHh---hcCceeccCHHHHHh
Confidence            345689999996 99999999998865 778764 6653210   00         122221   223345678888876


Q ss_pred             ccccCCCccEEEEccCchhHHHHHHH----HHHCCCcEEEeC
Q 027650          100 SISQSKARAVVIDFTDASTVYDNVKQ----ATAFGMRSVVYV  137 (220)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~----al~~G~~vVigT  137 (220)
                            ++|+||-+.++....+.+..    .+ .|.-+|.-+
T Consensus        90 ------~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           90 ------GAELVVNATEGASSIAALTAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             ------HCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECC
T ss_pred             ------cCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECC
Confidence                  69999977776665555432    23 566666544

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.48  E-value=0.0014  Score=55.58  Aligned_cols=124  Identities=10%  Similarity=0.035  Sum_probs=70.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc----cCC---HHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~~d---l~~~l~~~~~~~~  106 (220)
                      ++++|.|.|++|.+|+.+++.+.+..+.+++++..+.. ......+..    .++.+    .+|   +++++.      +
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~-~~~~~~l~~----~~~~~~~~D~~d~~~l~~~~~------~   72 (299)
T 2wm3_A            4 DKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR-KKAAKELRL----QGAEVVQGDQDDQVIMELALN------G   72 (299)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT-SHHHHHHHH----TTCEEEECCTTCHHHHHHHHT------T
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC-CHHHHHHHH----CCCEEEEecCCCHHHHHHHHh------c
Confidence            35789999999999999999998764488887654321 111111111    12211    223   445554      7


Q ss_pred             ccEEEEccCch----------hHHHHHHHHHHCCCc-EEEeCC-CC---------CH--HHHHHHHHHhhhcCceEE-Ec
Q 027650          107 RAVVIDFTDAS----------TVYDNVKQATAFGMR-SVVYVP-HI---------QL--ETVSALSAFCDKASMGCL-IA  162 (220)
Q Consensus       107 ~DVVIDfT~p~----------~~~~~~~~al~~G~~-vVigTt-G~---------~~--e~~~~L~~aA~~~~v~vv-ia  162 (220)
                      +|+||.++.+.          .....+..+.+.|+. +|..++ +.         ..  .....++++.++.|+++. +.
T Consensus        73 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~~ilr  152 (299)
T 2wm3_A           73 AYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYFRDIGVPMTSVR  152 (299)
T ss_dssp             CSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTTSCCCHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCCCcccCchhhHHHHHHHHHHHCCCCEEEEe
Confidence            99999776421          223445667777864 444222 21         11  112345666666677655 45


Q ss_pred             CCCcHH
Q 027650          163 PTLSIG  168 (220)
Q Consensus       163 pNfS~G  168 (220)
                      |.+-.|
T Consensus       153 p~~~~~  158 (299)
T 2wm3_A          153 LPCYFE  158 (299)
T ss_dssp             CCEEGG
T ss_pred             ecHHhh
Confidence            665555

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.46  E-value=0.0012  Score=61.67  Aligned_cols=127  Identities=17%  Similarity=0.095  Sum_probs=71.3

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC--CcchhhhhcCCC------------------CCCccc
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV--GEDIGMVCDMEQ------------------PLEIPV   90 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~--g~d~g~l~g~~~------------------~~gv~v   90 (220)
                      +..++||+|+|+ |.||..++..+.+.+++ ++++ +|++..  ...+..+..-..                  ...+..
T Consensus        15 ~~~~mkIaVIGl-G~mG~~lA~~la~~~G~~~V~~-~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~   92 (478)
T 3g79_A           15 RGPIKKIGVLGM-GYVGIPAAVLFADAPCFEKVLG-FQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC   92 (478)
T ss_dssp             HCSCCEEEEECC-STTHHHHHHHHHHSTTCCEEEE-ECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE
T ss_pred             cCCCCEEEEECc-CHHHHHHHHHHHHhCCCCeEEE-EECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE
Confidence            346689999996 99999999999887688 8875 565321  002222211000                  112445


Q ss_pred             cCCHHHHHhccccCCCccEEEEccC-c---------hh--H---HHHHHHHHHCCCcEEEeCC---CCCHHHHHHHH-HH
Q 027650           91 MSDLTMVLGSISQSKARAVVIDFTD-A---------ST--V---YDNVKQATAFGMRSVVYVP---HIQLETVSALS-AF  151 (220)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DVVIDfT~-p---------~~--~---~~~~~~al~~G~~vVigTt---G~~~e~~~~L~-~a  151 (220)
                      ++| .+++.      ++|+||.+.+ |         +.  +   .+.+...++.|.-+|..+|   |.+++-.+.+. +.
T Consensus        93 ttd-~ea~~------~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~  165 (478)
T 3g79_A           93 TPD-FSRIS------ELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEE  165 (478)
T ss_dssp             ESC-GGGGG------GCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHH
T ss_pred             eCc-HHHHh------cCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHh
Confidence            566 44554      6999886532 2         11  1   2334444567776666554   44544433333 21


Q ss_pred             hhh---cCceEEEcCCCcH
Q 027650          152 CDK---ASMGCLIAPTLSI  167 (220)
Q Consensus       152 A~~---~~v~vviapNfS~  167 (220)
                      ...   ....++.+|.|.-
T Consensus       166 ~g~~~~~d~~v~~~Pe~~~  184 (478)
T 3g79_A          166 SGLKAGEDFALAHAPERVM  184 (478)
T ss_dssp             HCCCBTTTBEEEECCCCCC
T ss_pred             cCCCcCCceeEEeCCccCC
Confidence            110   1257889998743

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.46  E-value=0.00043  Score=60.54  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |+||.|+|++|.+|+.+++.+.+.++.+++++..+
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~   58 (372)
T 3slg_A           24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQ   58 (372)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCC
Confidence            57999999999999999999988778999887643

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.46  E-value=0.0015  Score=59.61  Aligned_cols=69  Identities=19%  Similarity=0.292  Sum_probs=44.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC----CC-----------CC-ccccCCHHHHHh
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----QP-----------LE-IPVMSDLTMVLG   99 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~----~~-----------~g-v~v~~dl~~~l~   99 (220)
                      |||+|+|+ |+||..++..+.+. +.++++ +|++.  ..+..+..-.    .+           .+ +..++|+++++.
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~-G~~V~~-~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~   75 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSAR-GHEVIG-VDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL   75 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHT-TCEEEE-ECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EECCH--HHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhc
Confidence            58999996 99999999988764 778665 56421  1111111000    00           22 556788888776


Q ss_pred             ccccCCCccEEEEccC
Q 027650          100 SISQSKARAVVIDFTD  115 (220)
Q Consensus       100 ~~~~~~~~DVVIDfT~  115 (220)
                            ++|+||.+.+
T Consensus        76 ------~aDvviiaVp   85 (436)
T 1mv8_A           76 ------DSDVSFICVG   85 (436)
T ss_dssp             ------TCSEEEECCC
T ss_pred             ------cCCEEEEEcC
Confidence                  7999996653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.46  E-value=0.0015  Score=51.90  Aligned_cols=132  Identities=14%  Similarity=0.067  Sum_probs=74.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV  110 (220)
                      ..+|+|+|+ |+||+.+++.+....+.++++ +|++.  .....+.    ..|+.+ +   ++.+.+ .+.....++|+|
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~v-id~~~--~~~~~~~----~~g~~~~~gd~~~~~~l-~~~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGKISLG-IEIRE--EAAQQHR----SEGRNVISGDATDPDFW-ERILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCSCEEE-EESCH--HHHHHHH----HTTCCEEECCTTCHHHH-HTBCSCCCCCEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCCeEEE-EECCH--HHHHHHH----HCCCCEEEcCCCCHHHH-HhccCCCCCCEE
Confidence            468999997 999999999887642677764 56531  1222222    123332 2   233322 110001378999


Q ss_pred             EEccCchhHH-HHHHHHHHCC-CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhc
Q 027650          111 IDFTDASTVY-DNVKQATAFG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS  180 (220)
Q Consensus       111 IDfT~p~~~~-~~~~~al~~G-~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~  180 (220)
                      |.++...... ..+..+.+.+ ...|+.. ..+++..+.+    ++.|+..+++|....|-.+...+.+.+.
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~-~~~~~~~~~l----~~~G~~~vi~p~~~~a~~l~~~~~~~~~  176 (183)
T 3c85_A          110 LLAMPHHQGNQTALEQLQRRNYKGQIAAI-AEYPDQLEGL----LESGVDAAFNIYSEAGSGFARHVCKQLE  176 (183)
T ss_dssp             EECCSSHHHHHHHHHHHHHTTCCSEEEEE-ESSHHHHHHH----HHHTCSEEEEHHHHHHHHHHHHHHHHHC
T ss_pred             EEeCCChHHHHHHHHHHHHHCCCCEEEEE-ECCHHHHHHH----HHcCCCEEEchHHHHHHHHHHHHHHhcC
Confidence            9766544433 3334445545 2233322 2345544444    3457888899998888877777766554

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.40  E-value=0.00072  Score=58.99  Aligned_cols=93  Identities=15%  Similarity=0.117  Sum_probs=58.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---cC---CC----CCCc-cccCCHHHHHhcccc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---DM---EQ----PLEI-PVMSDLTMVLGSISQ  103 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~---g~---~~----~~gv-~v~~dl~~~l~~~~~  103 (220)
                      +|||+|+|+ |.||..++..+... +.++. +++++.  ..+..+.   +.   +.    ...+ .+++++++++.    
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~-g~~V~-~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   74 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALK-GQSVL-AWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK----   74 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT----
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhC-CCEEE-EEeCCH--HHHHHHHhcCCeEEeccccccccccceecCCHHHHHh----
Confidence            479999997 99999999988764 67755 566531  1111111   10   00    0011 25678888775    


Q ss_pred             CCCccEEEEccCchhHHHHHHHH---HHCCCcEEEeCCC
Q 027650          104 SKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPH  139 (220)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG  139 (220)
                        ++|+||.++++..+.+.+...   ++.|..+|+. .|
T Consensus        75 --~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~-~~  110 (359)
T 1bg6_A           75 --DADVILIVVPAIHHASIAANIASYISEGQLIILN-PG  110 (359)
T ss_dssp             --TCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES-SC
T ss_pred             --cCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc-CC
Confidence              799999777766666655544   3456666665 55

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.39  E-value=0.00043  Score=59.97  Aligned_cols=121  Identities=16%  Similarity=0.138  Sum_probs=67.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec--CCCCcchhhhhcCCC--CCC-----ccccC--CHHHHHhccccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS--HSVGEDIGMVCDMEQ--PLE-----IPVMS--DLTMVLGSISQS  104 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~--~~~g~d~g~l~g~~~--~~g-----v~v~~--dl~~~l~~~~~~  104 (220)
                      |||+|+|+ |.||..++..+.+. +.++.. +++  +  ......+...+.  ..|     +.+++  ++++++.     
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~-g~~V~~-~~r~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----   70 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDN-GNEVRI-WGTEFD--TEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE-----   70 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHH-CCEEEE-ECCGGG--HHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT-----
T ss_pred             CEEEEECc-CHHHHHHHHHHHhC-CCeEEE-EEccCC--HHHHHHHHHhCcCcccCccccceEEecHHhHHHHHh-----
Confidence            58999997 99999999988764 567654 454  2  111222221000  001     24455  7777764     


Q ss_pred             CCccEEEEccCchhHHHHHHHH--HHCCCcEEEeCCCC---CHHHHHHHHHHhhhc-C----ceEEEcCCCcH
Q 027650          105 KARAVVIDFTDASTVYDNVKQA--TAFGMRSVVYVPHI---QLETVSALSAFCDKA-S----MGCLIAPTLSI  167 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~a--l~~G~~vVigTtG~---~~e~~~~L~~aA~~~-~----v~vviapNfS~  167 (220)
                       ++|+||-++.+..+.+.+...  +..|..+|.-+.|+   .+...+.+.+...+. +    ..+...||+..
T Consensus        71 -~~D~vi~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~  142 (335)
T 1txg_A           71 -NAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAR  142 (335)
T ss_dssp             -TCSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHH
T ss_pred             -cCCEEEEcCChHHHHHHHHHHhcCCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHH
Confidence             799999777666555555433  23344445434477   432223344443331 2    35566788743

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=97.39  E-value=0.00027  Score=63.23  Aligned_cols=100  Identities=18%  Similarity=0.174  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--------------CCCcchh-hhhcCCC------CCCcccc--
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--------------SVGEDIG-MVCDMEQ------PLEIPVM--   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--------------~~g~d~g-~l~g~~~------~~gv~v~--   91 (220)
                      |+||+|+|. ||+||.+.|++.+.+++|+|++-|+.              -.|+--+ ++.--++      ...+.++  
T Consensus         3 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~e   81 (337)
T 3v1y_O            3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI   81 (337)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEECC
T ss_pred             ceEEEEECC-ChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEEEEEe
Confidence            689999996 99999999999988999999998751              0122111 1000000      0113343  


Q ss_pred             CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           92 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                      .|++++-..   +.++|+|++.|-.....+.+...++.|.. |||..|
T Consensus        82 ~dp~~i~w~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsap  126 (337)
T 3v1y_O           82 RNPDEIPWA---EAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAP  126 (337)
T ss_dssp             SSGGGCCHH---HHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSC
T ss_pred             cCcccCCcc---ccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCC
Confidence            344443110   02789999888777778889999999975 555444

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.37  E-value=0.0016  Score=48.66  Aligned_cols=123  Identities=13%  Similarity=0.250  Sum_probs=68.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV  110 (220)
                      .|||+|+|+ |+||+.+++.+.+. +.+++. +|++.  .....+..   ..++.+ .   .+.+.+...  ...++|+|
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~-g~~v~~-~d~~~--~~~~~~~~---~~~~~~~~~d~~~~~~l~~~--~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEK-GHDIVL-IDIDK--DICKKASA---EIDALVINGDCTKIKTLEDA--GIEDADMY   73 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHT-TCEEEE-EESCH--HHHHHHHH---HCSSEEEESCTTSHHHHHHT--TTTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCeEEE-EECCH--HHHHHHHH---hcCcEEEEcCCCCHHHHHHc--CcccCCEE
Confidence            369999997 99999999998764 678664 56531  11222211   113321 1   233332210  00378999


Q ss_pred             EEccCchhHHHHH-HHHHHCC-CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHH
Q 027650          111 IDFTDASTVYDNV-KQATAFG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (220)
Q Consensus       111 IDfT~p~~~~~~~-~~al~~G-~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~  173 (220)
                      |.++..+.....+ ..+.+.+ ..+|+-+.+...  .+.|    ++.|+..+++|.+..+-.+..
T Consensus        74 i~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~--~~~l----~~~g~~~v~~p~~~~~~~~~~  132 (140)
T 1lss_A           74 IAVTGKEEVNLMSSLLAKSYGINKTIARISEIEY--KDVF----ERLGVDVVVSPELIAANYIEK  132 (140)
T ss_dssp             EECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTH--HHHH----HHTTCSEEECHHHHHHHHHHH
T ss_pred             EEeeCCchHHHHHHHHHHHcCCCEEEEEecCHhH--HHHH----HHcCCCEEECHHHHHHHHHHH
Confidence            9776655443333 3444444 356665555433  2233    346788889898877775544

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.35  E-value=0.0017  Score=50.47  Aligned_cols=121  Identities=12%  Similarity=0.165  Sum_probs=67.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVVI  111 (220)
                      .+|+|+|+ |++|+.+++.+... +.+++. +|++.  ..+..+.   ...|+.+ .   .+.+.+...  ...++|+||
T Consensus        20 ~~v~IiG~-G~iG~~la~~L~~~-g~~V~v-id~~~--~~~~~~~---~~~g~~~~~~d~~~~~~l~~~--~~~~ad~Vi   89 (155)
T 2g1u_A           20 KYIVIFGC-GRLGSLIANLASSS-GHSVVV-VDKNE--YAFHRLN---SEFSGFTVVGDAAEFETLKEC--GMEKADMVF   89 (155)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCEEEE-EESCG--GGGGGSC---TTCCSEEEESCTTSHHHHHTT--TGGGCSEEE
T ss_pred             CcEEEECC-CHHHHHHHHHHHhC-CCeEEE-EECCH--HHHHHHH---hcCCCcEEEecCCCHHHHHHc--CcccCCEEE
Confidence            58999997 99999999988764 677764 55431  1122211   0122222 1   233322110  002689999


Q ss_pred             EccCchhHHHHHHHH-HH-CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650          112 DFTDASTVYDNVKQA-TA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       112 DfT~p~~~~~~~~~a-l~-~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                      .++..+.....+..+ .. .|...++.... +++..+.|    ++.|+. ++.|....+-.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~-~~~~~~~l----~~~G~~-vi~p~~~~a~~l~  146 (155)
T 2g1u_A           90 AFTNDDSTNFFISMNARYMFNVENVIARVY-DPEKIKIF----EENGIK-TICPAVLMIEKVK  146 (155)
T ss_dssp             ECSSCHHHHHHHHHHHHHTSCCSEEEEECS-SGGGHHHH----HTTTCE-EECHHHHHHHHHH
T ss_pred             EEeCCcHHHHHHHHHHHHHCCCCeEEEEEC-CHHHHHHH----HHCCCc-EEcHHHHHHHHHH
Confidence            887766555444434 43 56555555432 22232333    347888 8888877765443

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=97.35  E-value=0.0004  Score=62.09  Aligned_cols=100  Identities=20%  Similarity=0.199  Sum_probs=64.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCC-------------CCcchhhhh--c----CCCCCCcccc-
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHS-------------VGEDIGMVC--D----MEQPLEIPVM-   91 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~-------------~g~d~g~l~--g----~~~~~gv~v~-   91 (220)
                      +++||+|+|. ||+||.+.|++.+.  +++|+|++-|+..             .|+--+.+.  +    .. ...+.++ 
T Consensus         1 m~~kv~INGf-GrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~-Gk~I~v~~   78 (335)
T 3doc_A            1 MAVRVAINGF-GRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVG-YGPIKVHA   78 (335)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESS-SSEEEEEC
T ss_pred             CCEEEEEECC-CcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEEC-CEEEEEEe
Confidence            3589999996 99999999998877  7899999987410             111111110  0    00 1123443 


Q ss_pred             -CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                       .|++++-.   .+.++|+|+++|-.....+.+...++.|.. |||..|
T Consensus        79 e~dp~~i~w---~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsap  124 (335)
T 3doc_A           79 VRNPAELPW---KEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAP  124 (335)
T ss_dssp             CSSTTSSCT---TTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             ecccccccc---cccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCC
Confidence             24444321   013799999888777778889999999964 555444

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.35  E-value=0.00087  Score=57.51  Aligned_cols=100  Identities=13%  Similarity=0.118  Sum_probs=59.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh---------------cCCC------CCCccccCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC---------------DMEQ------PLEIPVMSD   93 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~---------------g~~~------~~gv~v~~d   93 (220)
                      +.||+|+|+ |.||+.++..+... +++++. +|++.  ..+....               ++..      ...+..++|
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~-G~~V~l-~d~~~--~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~   78 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFH-GFAVTA-YDINT--DALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDD   78 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSSH--HHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCeEEE-EeCCH--HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCC
Confidence            469999997 99999999988765 888765 67531  1111110               0000      002345788


Q ss_pred             HHHHHhccccCCCccEEEEccCch--hHHH---HHHHHHHCCCcEEEeCCCCCHHHH
Q 027650           94 LTMVLGSISQSKARAVVIDFTDAS--TVYD---NVKQATAFGMRSVVYVPHIQLETV  145 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~--~~~~---~~~~al~~G~~vVigTtG~~~e~~  145 (220)
                      +++++.      ++|+||...+++  ...+   .+...++.+.-++.-|++++.+++
T Consensus        79 ~~~~~~------~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~l  129 (283)
T 4e12_A           79 LAQAVK------DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDL  129 (283)
T ss_dssp             HHHHTT------TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred             HHHHhc------cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence            888875      799999766543  2222   333334445544445667776543

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.33  E-value=0.0026  Score=58.66  Aligned_cols=71  Identities=13%  Similarity=0.139  Sum_probs=45.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhh---------------hhcCCCCCCccccCCHHHH
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGM---------------VCDMEQPLEIPVMSDLTMV   97 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~---------------l~g~~~~~gv~v~~dl~~~   97 (220)
                      .||||+|+|+ |+||..++..+.+. ++.++++ +|++.  ..+..               +.......++..++|++++
T Consensus         4 ~~mkI~VIG~-G~mG~~lA~~La~~g~G~~V~~-~d~~~--~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~   79 (467)
T 2q3e_A            4 EIKKICCIGA-GYVGGPTCSVIAHMCPEIRVTV-VDVNE--SRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDA   79 (467)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEE-ECSCH--HHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHH
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhcCCCCEEEE-EECCH--HHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHH
Confidence            4679999996 99999999988775 3788665 56421  11111               1100000245667888888


Q ss_pred             HhccccCCCccEEEEcc
Q 027650           98 LGSISQSKARAVVIDFT  114 (220)
Q Consensus        98 l~~~~~~~~~DVVIDfT  114 (220)
                      +.      ++|+||.+.
T Consensus        80 ~~------~aDvViiaV   90 (467)
T 2q3e_A           80 IK------EADLVFISV   90 (467)
T ss_dssp             HH------HCSEEEECC
T ss_pred             Hh------cCCEEEEEc
Confidence            76      699998664

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.33  E-value=0.00097  Score=53.52  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=28.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |||.|+|++|.+|+.+++.+.+. +.+++++..+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~   33 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNR-GHEVTAIVRN   33 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhC-CCEEEEEEcC
Confidence            58999999999999999999875 7898877643

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=97.31  E-value=0.00095  Score=59.92  Aligned_cols=100  Identities=22%  Similarity=0.259  Sum_probs=64.1

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------------CCcchhhhh--c----CCCCCCcccc-
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------------VGEDIGMVC--D----MEQPLEIPVM-   91 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------------~g~d~g~l~--g----~~~~~gv~v~-   91 (220)
                      +.|+||+|+|. ||+|+.+.|.+.+.+ +++|++-|+..              .|+--+++.  |    .. ...+.++ 
T Consensus         5 ~~~~kvgInGF-GRIGrlv~R~~~~~~-veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~-Gk~I~v~~   81 (346)
T 3h9e_O            5 ARELTVGINGF-GRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVD-NHEISVYQ   81 (346)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEET-TEEEEEEC
T ss_pred             CCeeEEEEECC-ChHHHHHHHHHHhCC-CEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEEC-CEEEEEEe
Confidence            46799999996 999999999988765 99999988510              121111110  0    00 0123343 


Q ss_pred             -CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCC-cEEEeCC
Q 027650           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVP  138 (220)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigTt  138 (220)
                       .|++++-..   +.++|+|++.|-.....+.+...++.|. .|||-.|
T Consensus        82 e~dp~~i~W~---~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsap  127 (346)
T 3h9e_O           82 CKEPKQIPWR---AVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAP  127 (346)
T ss_dssp             CSSGGGCCGG---GGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSC
T ss_pred             cCChhhCCcc---cccccEEEEeccccCCHHHHHHHHHcCCCEEEECCC
Confidence             244443210   1279999988877778889999999996 4666554

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.30  E-value=0.00015  Score=55.90  Aligned_cols=85  Identities=11%  Similarity=0.146  Sum_probs=55.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ..||+|+|+ |.||+.+++.+.. .+++ +.+++++.  ..+.++..   .++  +..++++++++.      ++|+||.
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~-~g~~-v~v~~r~~--~~~~~~a~---~~~~~~~~~~~~~~~~~------~~Divi~   86 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSY-PQYK-VTVAGRNI--DHVRAFAE---KYEYEYVLINDIDSLIK------NNDVIIT   86 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCT-TTCE-EEEEESCH--HHHHHHHH---HHTCEEEECSCHHHHHH------TCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHh-CCCE-EEEEcCCH--HHHHHHHH---HhCCceEeecCHHHHhc------CCCEEEE
Confidence            458999997 9999999998876 6899 77888642  12222221   122  234678888886      7999998


Q ss_pred             ccCchhHHHHHHHHHHCCCcEE
Q 027650          113 FTDASTVYDNVKQATAFGMRSV  134 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vV  134 (220)
                      +|+..... .....++.|..++
T Consensus        87 at~~~~~~-~~~~~l~~g~~vi  107 (144)
T 3oj0_A           87 ATSSKTPI-VEERSLMPGKLFI  107 (144)
T ss_dssp             CSCCSSCS-BCGGGCCTTCEEE
T ss_pred             eCCCCCcE-eeHHHcCCCCEEE
Confidence            77543211 1123445676665

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.29  E-value=0.00085  Score=57.27  Aligned_cols=89  Identities=16%  Similarity=0.206  Sum_probs=55.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +|+||.|.|++|.+|+.+++.+.+. +.+++++..+.  +.. . +.+.. -..++. .+++++++.      ++|+||.
T Consensus         1 M~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~--~~~-~-~~~~~~~~~Dl~-~~~~~~~~~------~~d~Vih   68 (311)
T 3m2p_A            1 MSLKIAVTGGTGFLGQYVVESIKND-GNTPIILTRSI--GNK-A-INDYEYRVSDYT-LEDLINQLN------DVDAVVH   68 (311)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCC--C-------CCEEEECCCC-HHHHHHHTT------TCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhC-CCEEEEEeCCC--Ccc-c-CCceEEEEcccc-HHHHHHhhc------CCCEEEE
Confidence            3579999999999999999999875 78888766441  111 1 11110 011233 344555654      7999998


Q ss_pred             ccCch--------------hHHHHHHHHHHCCCc-EE
Q 027650          113 FTDAS--------------TVYDNVKQATAFGMR-SV  134 (220)
Q Consensus       113 fT~p~--------------~~~~~~~~al~~G~~-vV  134 (220)
                      +..+.              .....++.|.+.|+. +|
T Consensus        69 ~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v  105 (311)
T 3m2p_A           69 LAATRGSQGKISEFHDNEILTQNLYDACYENNISNIV  105 (311)
T ss_dssp             CCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             ccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            75321              224566778888876 44

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.29  E-value=0.00046  Score=59.20  Aligned_cols=98  Identities=13%  Similarity=0.143  Sum_probs=56.3

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcC----C-cEEEEEEecCCCCcchhhhh---cCC--C------CCCccccCCHHH
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKAR----G-MEVAGAIDSHSVGEDIGMVC---DME--Q------PLEIPVMSDLTM   96 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~----~-~eLvg~vd~~~~g~d~g~l~---g~~--~------~~gv~v~~dl~~   96 (220)
                      ..+|||+|+|+ |.||..++..+.+.+    + .++.. +++.   .....+.   |..  .      ...+.++++.+.
T Consensus         6 ~~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~~V~~-~~r~---~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (317)
T 2qyt_A            6 QQPIKIAVFGL-GGVGGYYGAMLALRAAATDGLLEVSW-IARG---AHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAE   80 (317)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSEEEEE-ECCH---HHHHHHHHHTSEEEECSSCEEEECCSEEESCHHH
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCccccCCCCCEEE-EEcH---HHHHHHHhcCCeEEEeCCCCeEEecceEecCccc
Confidence            44589999997 999999999887652    5 67664 4541   1122221   110  0      001122345543


Q ss_pred             HHhccccCCCccEEEEccCchhHHHHHHHHH---HCCCcEEEeCCCCCH
Q 027650           97 VLGSISQSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQL  142 (220)
Q Consensus        97 ~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTtG~~~  142 (220)
                       ..      ++|+||-++.+..+.+.+....   ..+..+|.-+.|+..
T Consensus        81 -~~------~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           81 -VG------TVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             -HC------CEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             -cC------CCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence             32      7999997777666655554432   235556666678865

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.29  E-value=0.00044  Score=59.94  Aligned_cols=116  Identities=12%  Similarity=0.117  Sum_probs=70.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc--cCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ...+|+|+|+ |+||+.+++.+... ++++. ++|+..  .....+.    ..|+..  +.++++++.      ++|+||
T Consensus       156 ~g~~v~IiG~-G~iG~~~a~~l~~~-G~~V~-~~d~~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDvVi  220 (300)
T 2rir_A          156 HGSQVAVLGL-GRTGMTIARTFAAL-GANVK-VGARSS--AHLARIT----EMGLVPFHTDELKEHVK------DIDICI  220 (300)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHT-TCEEE-EEESSH--HHHHHHH----HTTCEEEEGGGHHHHST------TCSEEE
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHC-CCEEE-EEECCH--HHHHHHH----HCCCeEEchhhHHHHhh------CCCEEE
Confidence            3468999997 99999999988764 77766 466532  1122221    123332  367888775      799999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      ..+++....+.....++.|.-+| -+. |-..-+   + +.+++.|+.++..||++-++
T Consensus       221 ~~~p~~~i~~~~~~~mk~g~~li-n~a~g~~~~~---~-~~a~~~G~~~i~~pg~~g~v  274 (300)
T 2rir_A          221 NTIPSMILNQTVLSSMTPKTLIL-DLASRPGGTD---F-KYAEKQGIKALLAPGLPGIV  274 (300)
T ss_dssp             ECCSSCCBCHHHHTTSCTTCEEE-ECSSTTCSBC---H-HHHHHHTCEEEECCCHHHHH
T ss_pred             ECCChhhhCHHHHHhCCCCCEEE-EEeCCCCCcC---H-HHHHHCCCEEEECCCCCCcH
Confidence            77766443333333344554444 332 211111   3 45567789888899987766

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.25  E-value=0.00095  Score=59.86  Aligned_cols=106  Identities=13%  Similarity=0.062  Sum_probs=59.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe---cCCCCcchhhhhcCC-------CCCC--------cc-ccCCHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID---SHSVGEDIGMVCDME-------QPLE--------IP-VMSDLT   95 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd---~~~~g~d~g~l~g~~-------~~~g--------v~-v~~dl~   95 (220)
                      ||||+|+|+ |.||..++..+....+.++.. ++   ++  ...+..+....       ...+        +. +++|++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~~V~~-~~~~~r~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGVEVRV-LTLFADE--AERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPE   77 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTEEEEE-ECCSTTH--HHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCCEEEE-EeCCCCc--HHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHH
Confidence            579999997 999999999886545777764 55   21  11111111000       0001        22 567888


Q ss_pred             HHHhccccCCCccEEEEccCchhHHHHHHHHH---HCCCcEEE--eCCCCCHHHHHHHHH
Q 027650           96 MVLGSISQSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVV--YVPHIQLETVSALSA  150 (220)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVi--gTtG~~~e~~~~L~~  150 (220)
                      +++.      ++|+||.++++....+.+....   ..+..+|.  ++.|+..+..+.+.+
T Consensus        78 ~a~~------~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G~~~~~~~~l~~  131 (404)
T 3c7a_A           78 IAIS------GADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQCRDILGD  131 (404)
T ss_dssp             HHHT------TCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTTHHHHHHHHHGG
T ss_pred             HHhC------CCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCccHHHHHHHHHHh
Confidence            8775      7999996666665555554432   23554554  334544332234443

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=97.24  E-value=0.0023  Score=55.16  Aligned_cols=36  Identities=11%  Similarity=0.206  Sum_probs=28.3

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd   68 (220)
                      ..++||.|+|++|.+|+.+++.+.+. .++++++...
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~   58 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDA   58 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEec
Confidence            34689999999999999999998875 3478877643

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.24  E-value=0.0011  Score=56.21  Aligned_cols=127  Identities=17%  Similarity=0.176  Sum_probs=72.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-c-chhhhhcCCCCCCccc----cCC---HHHHHhccccC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-E-DIGMVCDMEQPLEIPV----MSD---LTMVLGSISQS  104 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~-d~g~l~g~~~~~gv~v----~~d---l~~~l~~~~~~  104 (220)
                      .|+||.|+|++|.+|+.+++.+.+. +.+++++..+.... . ....+..+. ..++.+    .+|   +.+++.     
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~d~~~l~~~~~-----   75 (313)
T 1qyd_A            3 KKSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALK-----   75 (313)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHT-----
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhC-CCcEEEEECCCcccchhHHHHHHHHH-hCCeEEEeCCCCCHHHHHHHHh-----
Confidence            3679999999999999999999875 68887755432110 0 111110000 112222    223   445554     


Q ss_pred             CCccEEEEccCc-------hhHHHHHHHHHHCC-CcEEEeCC-CCC---------H-----HHHHHHHHHhhhcCceEE-
Q 027650          105 KARAVVIDFTDA-------STVYDNVKQATAFG-MRSVVYVP-HIQ---------L-----ETVSALSAFCDKASMGCL-  160 (220)
Q Consensus       105 ~~~DVVIDfT~p-------~~~~~~~~~al~~G-~~vVigTt-G~~---------~-----e~~~~L~~aA~~~~v~vv-  160 (220)
                       ++|+||.++.+       ......+..|.++| +.-++-.. |.+         +     .....++++.++.++++. 
T Consensus        76 -~~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~~p~~~~y~sK~~~e~~~~~~g~~~~i  154 (313)
T 1qyd_A           76 -QVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTY  154 (313)
T ss_dssp             -TCSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCCCCCSSTTHHHHHHHHHHHHHHHTTCCBCE
T ss_pred             -CCCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEEecCCcCCccccccCCCCCcchHHHHHHHHHHHHhcCCCeEE
Confidence             79999987643       23456677888888 65444221 311         1     123446666677676654 


Q ss_pred             EcCCCcHH
Q 027650          161 IAPTLSIG  168 (220)
Q Consensus       161 iapNfS~G  168 (220)
                      +.|++=.|
T Consensus       155 lrp~~~~~  162 (313)
T 1qyd_A          155 VSSNMFAG  162 (313)
T ss_dssp             EECCEEHH
T ss_pred             EEeceecc
Confidence            45775555

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.23  E-value=0.0029  Score=48.40  Aligned_cols=129  Identities=9%  Similarity=0.056  Sum_probs=72.5

Q ss_pred             CCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCC
Q 027650           30 NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSK  105 (220)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~  105 (220)
                      +|...+.+|+|+|+ |++|+.+++.+.+ .+.++++ +|++.  ..+..+.    ..|+.+ +   ++.+. +...+ -.
T Consensus         2 ~~~~~~~~viIiG~-G~~G~~la~~L~~-~g~~v~v-id~~~--~~~~~~~----~~g~~~i~gd~~~~~~-l~~a~-i~   70 (140)
T 3fwz_A            2 NAVDICNHALLVGY-GRVGSLLGEKLLA-SDIPLVV-IETSR--TRVDELR----ERGVRAVLGNAANEEI-MQLAH-LE   70 (140)
T ss_dssp             CCCCCCSCEEEECC-SHHHHHHHHHHHH-TTCCEEE-EESCH--HHHHHHH----HTTCEEEESCTTSHHH-HHHTT-GG
T ss_pred             CcccCCCCEEEECc-CHHHHHHHHHHHH-CCCCEEE-EECCH--HHHHHHH----HcCCCEEECCCCCHHH-HHhcC-cc
Confidence            45566679999997 9999999999876 4778775 45431  1122221    123332 2   22222 21100 02


Q ss_pred             CccEEEEccCchhHH-HHHHHHHH--CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650          106 ARAVVIDFTDASTVY-DNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~-~~~~~al~--~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~  175 (220)
                      ++|++|.++..+... ..+..+.+  .++++|.-  ..+++..+.|+    +.|+-.++.|....+-.++..+
T Consensus        71 ~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar--~~~~~~~~~l~----~~G~d~vi~p~~~~a~~i~~~l  137 (140)
T 3fwz_A           71 CAKWLILTIPNGYEAGEIVASARAKNPDIEIIAR--AHYDDEVAYIT----ERGANQVVMGEREIARTMLELL  137 (140)
T ss_dssp             GCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE--ESSHHHHHHHH----HTTCSEEEEHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEE--ECCHHHHHHHH----HCCCCEEECchHHHHHHHHHHh
Confidence            689888555544332 23333333  24555532  34555555554    4678888988877777655543

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=97.23  E-value=0.00055  Score=64.34  Aligned_cols=118  Identities=11%  Similarity=0.054  Sum_probs=72.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCCCcchhhhhcCCCCCCccc----cCCHHHHHhccccCCC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA-----RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSISQSKA  106 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-----~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~~dl~~~l~~~~~~~~  106 (220)
                      .||+|+|+ |.||..+++.+...     .+++++...++..  +......    ..|+.+    ..++++++.      .
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~s--ks~e~A~----e~G~~v~d~ta~s~aEAa~------~  121 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGS--KSFDEAR----AAGFTEESGTLGDIWETVS------G  121 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCCEEEEEECTTC--SCHHHHH----HTTCCTTTTCEEEHHHHHH------H
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCCEEEEEeCCch--hhHHHHH----HCCCEEecCCCCCHHHHHh------c
Confidence            69999996 99999999999875     3778775555421  1111111    234443    357888886      6


Q ss_pred             ccEEEEccCchhHHHHH---HHHHHCCCcEEEeCCCCCHHHHHH-HHHHhhhcCceEE-EcCCCcHHH
Q 027650          107 RAVVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQLETVSA-LSAFCDKASMGCL-IAPTLSIGS  169 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~---~~al~~G~~vVigTtG~~~e~~~~-L~~aA~~~~v~vv-iapNfS~Gv  169 (220)
                      +|+||-..+|....+.+   ...++.|.- |+=..|++-+.++. ....-  .+++++ +.||..--+
T Consensus       122 ADVVILaVP~~~~~eVl~eI~p~LK~GaI-Ls~AaGf~I~~le~~~i~~p--~dv~VVrVmPNtPg~~  186 (525)
T 3fr7_A          122 SDLVLLLISDAAQADNYEKIFSHMKPNSI-LGLSHGFLLGHLQSAGLDFP--KNISVIAVCPKGMGPS  186 (525)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTCE-EEESSSHHHHHHHHTTCCCC--TTSEEEEEEESSCHHH
T ss_pred             CCEEEECCChHHHHHHHHHHHHhcCCCCe-EEEeCCCCHHHHhhhcccCC--CCCcEEEEecCCCchh
Confidence            99999777766554433   334455654 44467887654332 11222  347777 669955433

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.22  E-value=0.0023  Score=53.42  Aligned_cols=119  Identities=13%  Similarity=0.168  Sum_probs=69.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccc----cCC---HHHHHhccccCCCcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKARA  108 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~D  108 (220)
                      ||.|.|++|.+|+.+++.+.+. ++.+++++..+..   ....+..    .++.+    ..|   +++++.      ++|
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~---~~~~~~~----~~~~~~~~D~~d~~~~~~~~~------~~d   67 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPA---KAQALAA----QGITVRQADYGDEAALTSALQ------GVE   67 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTT---TCHHHHH----TTCEEEECCTTCHHHHHHHTT------TCS
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChH---hhhhhhc----CCCeEEEcCCCCHHHHHHHHh------CCC
Confidence            6899999999999999999875 5888887654321   1111111    11111    123   444553      789


Q ss_pred             EEEEccCc------hhHHHHHHHHHHCCCc-EE-EeCCCC------CHHHHHHHHHHhhhcCceEE-EcCCCcHH
Q 027650          109 VVIDFTDA------STVYDNVKQATAFGMR-SV-VYVPHI------QLETVSALSAFCDKASMGCL-IAPTLSIG  168 (220)
Q Consensus       109 VVIDfT~p------~~~~~~~~~al~~G~~-vV-igTtG~------~~e~~~~L~~aA~~~~v~vv-iapNfS~G  168 (220)
                      +||.++.+      ......+..|.+.|+. +| +++.+.      -.......+++.++.++++. +.|++-.+
T Consensus        68 ~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~y~~sK~~~e~~~~~~~~~~~ilrp~~~~~  142 (286)
T 2zcu_A           68 KLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGWYSE  142 (286)
T ss_dssp             EEEECC--------CHHHHHHHHHHHHTCCEEEEEEETTTTTCCSTTHHHHHHHHHHHHHHCSEEEEEEECCBHH
T ss_pred             EEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCcchhHHHHHHHHHHHHHcCCCeEEEeChHHhh
Confidence            99987643      2345566777777864 44 333221      12334455666666777766 45775433

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.22  E-value=0.00047  Score=58.02  Aligned_cols=79  Identities=15%  Similarity=0.186  Sum_probs=52.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||.|+|++|.+|+.+++.+.+. +.+++++....      +         ++.-.+++++++..    .++|+||.+..
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~------~---------D~~d~~~~~~~~~~----~~~d~vi~~a~   65 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPE-EYDIYPFDKKL------L---------DITNISQVQQVVQE----IRPHIIIHCAA   65 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTT-TEEEEEECTTT------S---------CTTCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhC-CCEEEEecccc------c---------CCCCHHHHHHHHHh----cCCCEEEECCc
Confidence            59999999999999999988764 78888754311      1         11112345566642    26999998753


Q ss_pred             chh------------------HHHHHHHHHHCCCcEE
Q 027650          116 AST------------------VYDNVKQATAFGMRSV  134 (220)
Q Consensus       116 p~~------------------~~~~~~~al~~G~~vV  134 (220)
                      ...                  ....++.|.+.|.++|
T Consensus        66 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v  102 (287)
T 3sc6_A           66 YTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLV  102 (287)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEE
T ss_pred             ccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            211                  2345677788888766

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=97.21  E-value=0.0048  Score=57.28  Aligned_cols=124  Identities=11%  Similarity=0.115  Sum_probs=69.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC----C------------CCCccccCCHHHH
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----Q------------PLEIPVMSDLTMV   97 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~----~------------~~gv~v~~dl~~~   97 (220)
                      ..|||+|+|+ |.||..++..+.+ .+.++++ +|++.  ..+..+....    .            ...+..++|++++
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~-~G~~V~~-~d~~~--~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a   81 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLAD-IGHDVFC-LDVDQ--AKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAA   81 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHH
T ss_pred             CCceEEEECc-CHHHHHHHHHHHh-CCCEEEE-EECCH--HHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHH
Confidence            3479999996 9999999998876 4778665 56421  1111111000    0            0124567888877


Q ss_pred             HhccccCCCccEEEEccCc----------hhHHHHHHH---HHHCCCcEEEeCCCCCHHHHHHHHHHhhh--------cC
Q 027650           98 LGSISQSKARAVVIDFTDA----------STVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDK--------AS  156 (220)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p----------~~~~~~~~~---al~~G~~vVigTtG~~~e~~~~L~~aA~~--------~~  156 (220)
                      +.      ++|+||.+.+.          ..+.+.++.   .++.|.-+|. +++..+...+++.+...+        ..
T Consensus        82 ~~------~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~-~STv~~gt~~~l~~~l~~~~~~g~~~~~  154 (478)
T 2y0c_A           82 VA------HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD-KSTVPVGTAERVRAAVAEELAKRGGDQM  154 (478)
T ss_dssp             HH------HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE-CSCCCTTHHHHHHHHHHHHHHHTTCCCC
T ss_pred             hh------cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCcCCCchHHHHHHHHHHhcCCCCCcc
Confidence            75      69999965432          344444433   3344554554 444433333333333222        12


Q ss_pred             ceEEEcCCCcHHH
Q 027650          157 MGCLIAPTLSIGS  169 (220)
Q Consensus       157 v~vviapNfS~Gv  169 (220)
                      .+++.+|.|..-.
T Consensus       155 ~~v~~~Pe~~~eG  167 (478)
T 2y0c_A          155 FSVVSNPEFLKEG  167 (478)
T ss_dssp             EEEEECCCCCCTT
T ss_pred             EEEEEChhhhccc
Confidence            4788889876433

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.20  E-value=0.0013  Score=54.21  Aligned_cols=86  Identities=13%  Similarity=0.152  Sum_probs=51.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-------cCCHHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-------~~dl~~~l~~~~~~~~  106 (220)
                      +|++|.|.|++|.+|+.+++.+.+....+++++..+..   ...++.    ..++.+       .++++++++      +
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~---~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~------~   88 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPA---KIHKPY----PTNSQIIMGDVLNHAALKQAMQ------G   88 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGG---GSCSSC----CTTEEEEECCTTCHHHHHHHHT------T
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChh---hhcccc----cCCcEEEEecCCCHHHHHHHhc------C
Confidence            46789999999999999999998754378877654311   111111    111111       223445554      7


Q ss_pred             ccEEEEccCchhH----HHHHHHHHHCCCc
Q 027650          107 RAVVIDFTDASTV----YDNVKQATAFGMR  132 (220)
Q Consensus       107 ~DVVIDfT~p~~~----~~~~~~al~~G~~  132 (220)
                      +|+||....+...    ...+..+.+.|..
T Consensus        89 ~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~  118 (236)
T 3qvo_A           89 QDIVYANLTGEDLDIQANSVIAAMKACDVK  118 (236)
T ss_dssp             CSEEEEECCSTTHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEcCCCCchhHHHHHHHHHHHHcCCC
Confidence            8999965543322    2345566677754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.19  E-value=0.001  Score=54.64  Aligned_cols=75  Identities=19%  Similarity=0.130  Sum_probs=47.7

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ..++||+|+|+ |+||+.+++.+.+. +.++.. +|+...                        .+      .++|+||.
T Consensus        17 ~~~~~I~iiG~-G~mG~~la~~l~~~-g~~V~~-~~~~~~------------------------~~------~~aD~vi~   63 (209)
T 2raf_A           17 FQGMEITIFGK-GNMGQAIGHNFEIA-GHEVTY-YGSKDQ------------------------AT------TLGEIVIM   63 (209)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECTTCC------------------------CS------SCCSEEEE
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEE-EcCCHH------------------------Hh------ccCCEEEE
Confidence            45679999996 99999999988764 677664 454310                        11      27899886


Q ss_pred             ccCchhHHHHHH---HHHHCCCcEEEeCCCCC
Q 027650          113 FTDASTVYDNVK---QATAFGMRSVVYVPHIQ  141 (220)
Q Consensus       113 fT~p~~~~~~~~---~al~~G~~vVigTtG~~  141 (220)
                      +.++....+.+.   ..++ +..+|.-++|++
T Consensus        64 av~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           64 AVPYPALAALAKQYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             CSCHHHHHHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred             cCCcHHHHHHHHHHHHhcC-CCEEEEECCCCC
Confidence            666555444443   2344 666665566765

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.18  E-value=0.0014  Score=55.54  Aligned_cols=124  Identities=13%  Similarity=0.135  Sum_probs=72.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC--c-ch---hhhhcCCCCCCccc----cC---CHHHHHhc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--E-DI---GMVCDMEQPLEIPV----MS---DLTMVLGS  100 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g--~-d~---g~l~g~~~~~gv~v----~~---dl~~~l~~  100 (220)
                      .|+||.|.|++|.+|+.+++.+.+. +.+++++..+....  . ..   ..+.    ..++.+    .+   ++.+++. 
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~~~l~----~~~v~~v~~D~~d~~~l~~~~~-   76 (308)
T 1qyc_A            3 SRSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFK----ASGANIVHGSIDDHASLVEAVK-   76 (308)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCTTTTHHHHHHHHHHH----TTTCEEECCCTTCHHHHHHHHH-
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhC-CCCEEEEECCcccccCHHHHHHHHHHH----hCCCEEEEeccCCHHHHHHHHc-
Confidence            3678999999999999999999875 67877654332110  0 01   1111    112222    12   3445554 


Q ss_pred             cccCCCccEEEEccCc---hhHHHHHHHHHHCC-CcEEEeCC-CCC--------H-----HHHHHHHHHhhhcCceEE-E
Q 027650          101 ISQSKARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQ--------L-----ETVSALSAFCDKASMGCL-I  161 (220)
Q Consensus       101 ~~~~~~~DVVIDfT~p---~~~~~~~~~al~~G-~~vVigTt-G~~--------~-----e~~~~L~~aA~~~~v~vv-i  161 (220)
                           ++|+||.++.+   ......+.+|.++| +.-++-.. |.+        +     .....++++.++.++++. +
T Consensus        77 -----~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~~~~  151 (308)
T 1qyc_A           77 -----NVDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYV  151 (308)
T ss_dssp             -----TCSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTHHHHHHHHHHHHHHHHHHTCCBEEE
T ss_pred             -----CCCEEEECCcchhhhhHHHHHHHHHhcCCCceEeecccccCccccccCCcchhHHHHHHHHHHHHHhcCCCeEEE
Confidence                 79999987654   33456677888888 65555322 311        1     123345666666666654 4


Q ss_pred             cCCCcHH
Q 027650          162 APTLSIG  168 (220)
Q Consensus       162 apNfS~G  168 (220)
                      .|++-.|
T Consensus       152 r~~~~~~  158 (308)
T 1qyc_A          152 SSNCFAG  158 (308)
T ss_dssp             ECCEEHH
T ss_pred             Eeceecc
Confidence            5776555

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=97.17  E-value=0.0046  Score=55.90  Aligned_cols=115  Identities=14%  Similarity=0.161  Sum_probs=65.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC--------------CCCccccCCHHHHHhcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ--------------PLEIPVMSDLTMVLGSI  101 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~--------------~~gv~v~~dl~~~l~~~  101 (220)
                      |||+|+|+ |+||..++..+.+  +.++++ +|++.  ..+..+...+.              ...+..++++.+++.  
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~--G~~V~~-~d~~~--~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~--   72 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL--QNEVTI-VDILP--SKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK--   72 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT--TSEEEE-ECSCH--HHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH--
T ss_pred             CEEEEECC-CHHHHHHHHHHhC--CCEEEE-EECCH--HHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc--
Confidence            58999997 9999999998876  788765 56421  11222211000              012345678877775  


Q ss_pred             ccCCCccEEEEccCch-----------hHHHHHHHH--HHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          102 SQSKARAVVIDFTDAS-----------TVYDNVKQA--TAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       102 ~~~~~~DVVIDfT~p~-----------~~~~~~~~a--l~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                          ++|+||.+.++.           .+.+.+...  ++.|.-+|..+| +...  .+++.+...+  -+++.+|.|.
T Consensus        73 ----~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~--~~~l~~~~~~--~~v~~~Pe~~  143 (402)
T 1dlj_A           73 ----EAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGF--ITEMRQKFQT--DRIIFSPEFL  143 (402)
T ss_dssp             ----HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTH--HHHHHHHTTC--SCEEECCCCC
T ss_pred             ----CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccH--HHHHHHHhCC--CeEEECCccc
Confidence                689999665443           233333222  445655565333 4322  3445555444  2777777753

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=97.17  E-value=0.00085  Score=60.49  Aligned_cols=101  Identities=23%  Similarity=0.156  Sum_probs=62.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHH----HHhcCCcEEEEEEecC--------------CCCcchhhhhc--------CCC---
Q 027650           34 SNIKVIINGAVKEIGRAAVIA----VTKARGMEVAGAIDSH--------------SVGEDIGMVCD--------MEQ---   84 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~----i~~~~~~eLvg~vd~~--------------~~g~d~g~l~g--------~~~---   84 (220)
                      +++||+|+|. ||+||.+.|+    +.+.+++++|++-|+-              -.|+--+.+.-        -++   
T Consensus         1 m~~kv~INGF-GrIGr~v~Ra~~~~~~~~~~~~vvaINd~~~d~~~~a~llkyDS~hG~f~~~v~~~~~~~~~~~~~~l~   79 (359)
T 3ids_C            1 MPIKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLV   79 (359)
T ss_dssp             CCEEEEEECT-THHHHHHHHHHHHTTCBTTTEEEEEEECSSCCHHHHHHHHHEETTTEECSSCEEEECSCTTSSSCCEEE
T ss_pred             CceEEEEECC-ChHHHHHHHHhHHHHhcCCCcEEEEEecCCCCHHHHHHHhcccCCCCCEeeEEEecccccccCCCCEEE
Confidence            3589999996 9999999998    6667899999998841              01111111100        000   


Q ss_pred             --CCCccccC---CHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           85 --PLEIPVMS---DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        85 --~~gv~v~~---dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                        ...+.++.   |++++-..   +.++|+|++.|--....+.+...++.|.. |||..|
T Consensus        80 inGk~I~v~~~e~dp~~i~w~---~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISap  136 (359)
T 3ids_C           80 VNGHRILCVKAQRNPADLPWG---KLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAP  136 (359)
T ss_dssp             ETTEEEEECCCCSSTTTSCHH---HHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSC
T ss_pred             ECCEEEEEEEccCCcccCCcc---ccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCC
Confidence              01234443   44432110   02789999888777778888899999975 555444

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=97.16  E-value=0.0015  Score=56.37  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=29.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd   68 (220)
                      +|+||.|+|++|.+|+.+++.+.+. ++.+++++..
T Consensus         3 ~m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r   38 (348)
T 1oc2_A            3 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   38 (348)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             cCcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            4689999999999999999998875 3788887654

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.15  E-value=0.00075  Score=57.77  Aligned_cols=128  Identities=14%  Similarity=0.113  Sum_probs=73.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc---chhhhhcCCCCCCccc----cC---CHHHHHhcccc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE---DIGMVCDMEQPLEIPV----MS---DLTMVLGSISQ  103 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~---d~g~l~g~~~~~gv~v----~~---dl~~~l~~~~~  103 (220)
                      +|++|.|.|++|.+|+.+++.+.+. +.++.++..+...+.   ....+..+. ..++.+    ++   ++.+++.    
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~l~~~~-~~~v~~v~~D~~d~~~l~~a~~----   76 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSF-SHPTFIYARPLTPDSTPSSVQLREEFR-SMGVTIIEGEMEEHEKMVSVLK----   76 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECCCCTTCCHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHT----
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhC-CCcEEEEECCcccccChHHHHHHHHhh-cCCcEEEEecCCCHHHHHHHHc----
Confidence            4679999999999999999999875 688887654320111   111110000 112221    22   3455554    


Q ss_pred             CCCccEEEEccCc---hhHHHHHHHHHHCC-CcEEEeCC-CCCH-------------HHHHHHHHHhhhcCceEE-EcCC
Q 027650          104 SKARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQL-------------ETVSALSAFCDKASMGCL-IAPT  164 (220)
Q Consensus       104 ~~~~DVVIDfT~p---~~~~~~~~~al~~G-~~vVigTt-G~~~-------------e~~~~L~~aA~~~~v~vv-iapN  164 (220)
                        ++|+||.++.+   ......+..|.+.| +.-+|-.. |.+.             .....++++.++.++++. +.||
T Consensus        77 --~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~~~lrp~  154 (321)
T 3c1o_A           77 --QVDIVISALPFPMISSQIHIINAIKAAGNIKRFLPSDFGCEEDRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSAN  154 (321)
T ss_dssp             --TCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEECSCCSSCGGGCCCCHHHHHHHHHHHHHHHHHHHHTCCBEEEECC
T ss_pred             --CCCEEEECCCccchhhHHHHHHHHHHhCCccEEeccccccCccccccCCCcchHHHHHHHHHHHHHHcCCCeEEEEec
Confidence              79999987653   34566778888888 65444332 4211             112345666666666644 4588


Q ss_pred             CcHHH
Q 027650          165 LSIGS  169 (220)
Q Consensus       165 fS~Gv  169 (220)
                      +=.|-
T Consensus       155 ~~~~~  159 (321)
T 3c1o_A          155 CFGAY  159 (321)
T ss_dssp             EEHHH
T ss_pred             eeccc
Confidence            65554

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.14  E-value=0.0011  Score=57.22  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=69.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc--cCCHHHHHhccccCCCccEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ...+|+|+|+ |+||+.+++.+... ++++. ++|+..  .....+.    ..|+..  +.++++++.      .+|+||
T Consensus       154 ~g~~v~IiG~-G~iG~~~a~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~~~l~~~l~------~aDvVi  218 (293)
T 3d4o_A          154 HGANVAVLGL-GRVGMSVARKFAAL-GAKVK-VGARES--DLLARIA----EMGMEPFHISKAAQELR------DVDVCI  218 (293)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EEESSH--HHHHHHH----HTTSEEEEGGGHHHHTT------TCSEEE
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhC-CCEEE-EEECCH--HHHHHHH----HCCCeecChhhHHHHhc------CCCEEE
Confidence            3468999996 99999999988764 67765 466532  1111111    123332  357888775      799999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      ..+++....+.....++.|.-+| -+. |-..-   .+ +.+++.|+.++..||+.-.+
T Consensus       219 ~~~p~~~i~~~~l~~mk~~~~li-n~ar~~~~~---~~-~~a~~~Gv~~~~~~~l~~~v  272 (293)
T 3d4o_A          219 NTIPALVVTANVLAEMPSHTFVI-DLASKPGGT---DF-RYAEKRGIKALLVPGLPGIV  272 (293)
T ss_dssp             ECCSSCCBCHHHHHHSCTTCEEE-ECSSTTCSB---CH-HHHHHHTCEEEECCCHHHHH
T ss_pred             ECCChHHhCHHHHHhcCCCCEEE-EecCCCCCC---CH-HHHHHCCCEEEECCCCCccc
Confidence            77765433333333445554444 332 21111   12 45566788888889976666

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.14  E-value=0.0018  Score=55.60  Aligned_cols=35  Identities=23%  Similarity=0.298  Sum_probs=29.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ++|||.|.|++|.+|+.+++.+.+. +.+++++..+
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~   46 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAA-GHDLVLIHRP   46 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECT
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEecC
Confidence            4569999999999999999999874 7888876543

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.13  E-value=0.0011  Score=56.72  Aligned_cols=124  Identities=14%  Similarity=0.126  Sum_probs=73.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCc--chhhhhcCCCCCCccc----cC---CHHHHHhccccC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGE--DIGMVCDMEQPLEIPV----MS---DLTMVLGSISQS  104 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~--d~g~l~g~~~~~gv~v----~~---dl~~~l~~~~~~  104 (220)
                      +|.||.|.|++|.+|+.+++.+.+. +.++.++..+.. ..  .+.++.    ..++.+    .+   ++.+++.     
T Consensus        10 m~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~-~~~~~~~~l~----~~~v~~v~~Dl~d~~~l~~a~~-----   78 (318)
T 2r6j_A           10 MKSKILIFGGTGYIGNHMVKGSLKL-GHPTYVFTRPNS-SKTTLLDEFQ----SLGAIIVKGELDEHEKLVELMK-----   78 (318)
T ss_dssp             CCCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECTTC-SCHHHHHHHH----HTTCEEEECCTTCHHHHHHHHT-----
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHC-CCcEEEEECCCC-chhhHHHHhh----cCCCEEEEecCCCHHHHHHHHc-----
Confidence            3458999999999999999999875 688877654321 11  011111    112222    22   3445554     


Q ss_pred             CCccEEEEccCc---hhHHHHHHHHHHCC-CcEEEeCC-CCC--------H-----HHHHHHHHHhhhcCceEE-EcCCC
Q 027650          105 KARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQ--------L-----ETVSALSAFCDKASMGCL-IAPTL  165 (220)
Q Consensus       105 ~~~DVVIDfT~p---~~~~~~~~~al~~G-~~vVigTt-G~~--------~-----e~~~~L~~aA~~~~v~vv-iapNf  165 (220)
                       ++|+||.++.+   ......+..|.+.| +.-++-+. |.+        +     .....++++.++.++++. +.||+
T Consensus        79 -~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~~~~~~lr~~~  157 (318)
T 2r6j_A           79 -KVDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFGVEEDRINALPPFEALIERKRMIRRAIEEANIPYTYVSANC  157 (318)
T ss_dssp             -TCSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEECSCCSSCTTTCCCCHHHHHHHHHHHHHHHHHHHTTCCBEEEECCE
T ss_pred             -CCCEEEECCchhhhHHHHHHHHHHHhcCCCCEEEeeccccCcccccCCCCcchhHHHHHHHHHHHHhcCCCeEEEEcce
Confidence             79999987653   33456667788888 65555322 321        1     122346667777777654 56776


Q ss_pred             cHHH
Q 027650          166 SIGS  169 (220)
Q Consensus       166 S~Gv  169 (220)
                      =.+-
T Consensus       158 ~~~~  161 (318)
T 2r6j_A          158 FASY  161 (318)
T ss_dssp             EHHH
T ss_pred             ehhh
Confidence            5443

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.12  E-value=0.001  Score=58.64  Aligned_cols=35  Identities=20%  Similarity=0.246  Sum_probs=29.2

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID   68 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd   68 (220)
                      -.|+||.|.|++|.+|+.+++.+.+. + .+++++..
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~r   65 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLEL-GVNQVHVVDN   65 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHT-TCSEEEEECC
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHc-CCceEEEEEC
Confidence            34679999999999999999999875 6 88887643

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.11  E-value=0.0018  Score=51.17  Aligned_cols=115  Identities=17%  Similarity=0.235  Sum_probs=65.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-------cCCHHHHHhccccCCCcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA  108 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D  108 (220)
                      +||.|.|++|.+|+.+++.+.+. +.+++++..+..   ....+.    ..++.+       .+++++++.      ++|
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~~---~~~~~~----~~~~~~~~~D~~~~~~~~~~~~------~~d   69 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSS---RLPSEG----PRPAHVVVGDVLQAADVDKTVA------GQD   69 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGG---GSCSSS----CCCSEEEESCTTSHHHHHHHHT------TCS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeChh---hccccc----CCceEEEEecCCCHHHHHHHHc------CCC
Confidence            68999999999999999999875 788887654311   111110    011111       123445554      789


Q ss_pred             EEEEccCch-----------hHHHHHHHHHHCCCc-EE-EeCCC-C--C----------HHHHHHHHHHhhhcCceEE-E
Q 027650          109 VVIDFTDAS-----------TVYDNVKQATAFGMR-SV-VYVPH-I--Q----------LETVSALSAFCDKASMGCL-I  161 (220)
Q Consensus       109 VVIDfT~p~-----------~~~~~~~~al~~G~~-vV-igTtG-~--~----------~e~~~~L~~aA~~~~v~vv-i  161 (220)
                      +||.+..+.           .....++.+.+.|.. +| +++.+ +  .          ......++++.++.++++. +
T Consensus        70 ~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~~~i~~~~l  149 (206)
T 1hdo_A           70 AVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVAV  149 (206)
T ss_dssp             EEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             EEEECccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccccccchhHHHHHHHHHHHHHhCCCCEEEE
Confidence            999876432           234555667777764 44 33332 1  1          0222345566666777766 3


Q ss_pred             cCC
Q 027650          162 APT  164 (220)
Q Consensus       162 apN  164 (220)
                      .|.
T Consensus       150 rp~  152 (206)
T 1hdo_A          150 MPP  152 (206)
T ss_dssp             CCS
T ss_pred             eCC
Confidence            344

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.09  E-value=0.0027  Score=55.11  Aligned_cols=34  Identities=24%  Similarity=0.131  Sum_probs=28.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ++||.|.|++|.+|+.+++.+.+. +.++.++..+
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~R~   43 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDA-HRPTYILARP   43 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEECS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-CCCEEEEECC
Confidence            469999999999999999999876 5888876653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.07  E-value=0.0029  Score=50.95  Aligned_cols=32  Identities=28%  Similarity=0.446  Sum_probs=28.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      |||.|+|++|.+|+.+++.+.+. +.+++++..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~-g~~V~~~~R   32 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRR-GHEVLAVVR   32 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEES
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHC-CCEEEEEEe
Confidence            58999999999999999999875 789888764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.07  E-value=0.0016  Score=53.29  Aligned_cols=117  Identities=11%  Similarity=0.187  Sum_probs=67.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc-cc-----cCCHHHHHhccccCCCcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PV-----MSDLTMVLGSISQSKARA  108 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v-----~~dl~~~l~~~~~~~~~D  108 (220)
                      .+||.|.|++|.+|+.+++.+.+. +.+++++..+.   ....++..    .++ .+     .+++.+++.      ++|
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~---~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~------~~D   86 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNK-GHEPVAMVRNE---EQGPELRE----RGASDIVVANLEEDFSHAFA------SID   86 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSG---GGHHHHHH----TTCSEEEECCTTSCCGGGGT------TCS
T ss_pred             CCeEEEECCCChHHHHHHHHHHhC-CCeEEEEECCh---HHHHHHHh----CCCceEEEcccHHHHHHHHc------CCC
Confidence            369999999999999999999874 78888765432   12222211    111 11     145555554      799


Q ss_pred             EEEEccCch--------------hHHHHHHHHHHCCCc-EEE-eCCC-CCHH-----------HHHHHHHHhhhcCceEE
Q 027650          109 VVIDFTDAS--------------TVYDNVKQATAFGMR-SVV-YVPH-IQLE-----------TVSALSAFCDKASMGCL  160 (220)
Q Consensus       109 VVIDfT~p~--------------~~~~~~~~al~~G~~-vVi-gTtG-~~~e-----------~~~~L~~aA~~~~v~vv  160 (220)
                      +||....+.              .....++.+.++|.. +|. ++.+ ..++           ....++++.++.++++.
T Consensus        87 ~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~gi~~~  166 (236)
T 3e8x_A           87 AVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPDQGPMNMRHYLVAKRLADDELKRSSLDYT  166 (236)
T ss_dssp             EEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCGGGSCGGGHHHHHHHHHHHHHHHHSSSEEE
T ss_pred             EEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCChhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence            999875421              234456677777754 443 3333 2221           12334555556677664


Q ss_pred             -EcCCC
Q 027650          161 -IAPTL  165 (220)
Q Consensus       161 -iapNf  165 (220)
                       +.|.+
T Consensus       167 ~lrpg~  172 (236)
T 3e8x_A          167 IVRPGP  172 (236)
T ss_dssp             EEEECS
T ss_pred             EEeCCc
Confidence             33443

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.05  E-value=0.00084  Score=59.40  Aligned_cols=90  Identities=18%  Similarity=0.118  Sum_probs=56.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ++||+|+|+ |.||+.+++.+... +++++ ++++..  ....+.+   ...|+.++ ++++++.      ++|+||.++
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~-G~~V~-~~~~~~--~~~~~~a---~~~G~~~~-~~~e~~~------~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDS-GVDVT-VGLRSG--SATVAKA---EAHGLKVA-DVKTAVA------AADVVMILT   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHT-TCCEE-EECCTT--CHHHHHH---HHTTCEEE-CHHHHHH------TCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHC-cCEEE-EEECCh--HHHHHHH---HHCCCEEc-cHHHHHh------cCCEEEEeC
Confidence            468999997 99999999998764 67765 455432  1111111   12355555 8888876      799999777


Q ss_pred             CchhHHHHHH-HH---HHCCCcEEEeCCCC
Q 027650          115 DASTVYDNVK-QA---TAFGMRSVVYVPHI  140 (220)
Q Consensus       115 ~p~~~~~~~~-~a---l~~G~~vVigTtG~  140 (220)
                      ++....+.+. ..   ++.|..++. ..|+
T Consensus        81 p~~~~~~v~~~~i~~~l~~~~ivi~-~~gv  109 (338)
T 1np3_A           81 PDEFQGRLYKEEIEPNLKKGATLAF-AHGF  109 (338)
T ss_dssp             CHHHHHHHHHHHTGGGCCTTCEEEE-SCCH
T ss_pred             CcHHHHHHHHHHHHhhCCCCCEEEE-cCCc
Confidence            7766655554 22   334554443 4454

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.01  E-value=0.0022  Score=47.91  Aligned_cols=126  Identities=16%  Similarity=0.168  Sum_probs=70.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-c---cCCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-V---MSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v---~~dl~~~l~~~~~~~~~DVV  110 (220)
                      |.+|+|+|+ |++|+.+++.+... +.+++. +|++.  .....+.    ..+.. +   ..+.+.+...  ...++|+|
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~-g~~v~~-~d~~~--~~~~~~~----~~~~~~~~~d~~~~~~l~~~--~~~~~d~v   74 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRM-GHEVLA-VDINE--EKVNAYA----SYATHAVIANATEENELLSL--GIRNFEYV   74 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHT-TCCCEE-EESCH--HHHHTTT----TTCSEEEECCTTCHHHHHTT--TGGGCSEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHC-CCEEEE-EeCCH--HHHHHHH----HhCCEEEEeCCCCHHHHHhc--CCCCCCEE
Confidence            457999998 99999999998764 677664 55421  1111111    11221 1   1233332210  00268999


Q ss_pred             EEccCch--hHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHH
Q 027650          111 IDFTDAS--TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (220)
Q Consensus       111 IDfT~p~--~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a  176 (220)
                      |.++..+  ........+.+.|.+-++-.. -+++..+.++    +.|...++.|....+-.+...+.
T Consensus        75 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~~~~~~~~l~----~~g~~~vi~p~~~~~~~l~~~~~  137 (144)
T 2hmt_A           75 IVAIGANIQASTLTTLLLKELDIPNIWVKA-QNYYHHKVLE----KIGADRIIHPEKDMGVKIAQSLS  137 (144)
T ss_dssp             EECCCSCHHHHHHHHHHHHHTTCSEEEEEC-CSHHHHHHHH----HHTCSEEECHHHHHHHHHHHHHH
T ss_pred             EECCCCchHHHHHHHHHHHHcCCCeEEEEe-CCHHHHHHHH----HcCCCEEECccHHHHHHHHHHHh
Confidence            9776643  223455666677766554322 2333333343    35677888888777776655444

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.00  E-value=0.0014  Score=53.41  Aligned_cols=35  Identities=14%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd   68 (220)
                      .+++|.|.|++|.+|+.+++.+.+.. +.+++++..
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r   38 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR   38 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            46789999999999999999998875 789887654

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.00  E-value=0.0034  Score=55.97  Aligned_cols=105  Identities=15%  Similarity=0.104  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +.||+|+|+ |.||..+++.+... +.++. ++|++.  .......    ..|+..+.++++++...  ..++|+||.++
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~-G~~V~-~~dr~~--~~~~~a~----~~G~~~~~~~~e~~~~a--~~~aDlVilav   76 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAA-NHSVF-GYNRSR--SGAKSAV----DEGFDVSADLEATLQRA--AAEDALIVLAV   76 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHT-TCCEE-EECSCH--HHHHHHH----HTTCCEESCHHHHHHHH--HHTTCEEEECS
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HcCCeeeCCHHHHHHhc--ccCCCEEEEeC
Confidence            468999996 99999999998865 67765 466532  1122222    34566678888877410  01479999777


Q ss_pred             CchhHHHHHHHHH--HCCCcEEEeCCCCCHHHHHHHHHH
Q 027650          115 DASTVYDNVKQAT--AFGMRSVVYVPHIQLETVSALSAF  151 (220)
Q Consensus       115 ~p~~~~~~~~~al--~~G~~vVigTtG~~~e~~~~L~~a  151 (220)
                      ++....+.+....  ..| .+|+-..+...+-.+.+.+.
T Consensus        77 P~~~~~~vl~~l~~~~~~-~iv~Dv~Svk~~i~~~~~~~  114 (341)
T 3ktd_A           77 PMTAIDSLLDAVHTHAPN-NGFTDVVSVKTAVYDAVKAR  114 (341)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CCEEECCSCSHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHccCCC-CEEEEcCCCChHHHHHHHHh
Confidence            7766555554333  334 34544455555545555543

>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}

Probab=96.97  E-value=0.0023  Score=59.79  Aligned_cols=76  Identities=8%  Similarity=0.072  Sum_probs=63.7

Q ss_pred             CCccccCCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650           86 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus        86 ~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      .++|+|..+.++.+.   ...+|++|.+.++..+.+.++.|.++|+++||=|.||..++..+|.++|+++|+.++ -||-
T Consensus        19 ~~~Pv~~~~~~~~~~---p~~~DlavI~vPa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rli-GPNc   94 (480)
T 3dmy_A           19 QALTQVRRWDSACQK---LPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVM-GPDC   94 (480)
T ss_dssp             -CCEEESSHHHHHHH---STTCCEEEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEE-CSSC
T ss_pred             CCCcccchHHHHHhc---CCCCCEEEEecCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE-ecCc
Confidence            368999888887653   136899888999999999999999999998887779998888899999999988775 3664

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.97  E-value=0.0016  Score=54.63  Aligned_cols=120  Identities=11%  Similarity=0.126  Sum_probs=70.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccc----cCC---HHHHHhccccCCCc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSD---LTMVLGSISQSKAR  107 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~~d---l~~~l~~~~~~~~~  107 (220)
                      +||.|.|++|.+|+.+++.+.+. ++.+++++..+..   ....+..    .++.+    .+|   ++++++      ++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~---~~~~l~~----~~~~~~~~D~~d~~~l~~~~~------~~   67 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVE---KASTLAD----QGVEVRHGDYNQPESLQKAFA------GV   67 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTT---TTHHHHH----TTCEEEECCTTCHHHHHHHTT------TC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHH---HHhHHhh----cCCeEEEeccCCHHHHHHHHh------cC
Confidence            47999999999999999999875 5888887654321   1111111    11111    123   444453      79


Q ss_pred             cEEEEccCc--------hhHHHHHHHHHHCCC-cEE-EeCCCC------CHHHHHHHHHHhhhcCceEE-EcCCCcHH
Q 027650          108 AVVIDFTDA--------STVYDNVKQATAFGM-RSV-VYVPHI------QLETVSALSAFCDKASMGCL-IAPTLSIG  168 (220)
Q Consensus       108 DVVIDfT~p--------~~~~~~~~~al~~G~-~vV-igTtG~------~~e~~~~L~~aA~~~~v~vv-iapNfS~G  168 (220)
                      |+||.++.+        ......++.|.+.|+ ++| +++.+-      -.......+++.++.++++. +-|++-.|
T Consensus        68 d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~y~~~K~~~E~~~~~~~~~~~ilrp~~~~~  145 (287)
T 2jl1_A           68 SKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAFAEESIIPLAHVHLATEYAIRTTNIPYTFLRNALYTD  145 (287)
T ss_dssp             SEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGGCCSTHHHHHHHHHHHHHHTTCCEEEEEECCBHH
T ss_pred             CEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCCchHHHHHHHHHHHHHcCCCeEEEECCEecc
Confidence            999987643        123455677778886 444 333221      12233445666666777765 44665444

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.97  E-value=0.0042  Score=53.63  Aligned_cols=35  Identities=23%  Similarity=0.164  Sum_probs=29.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +++||.|+|++|.+|+.+++.+.+. +.+++++...
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~   58 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKL-NQVVIGLDNF   58 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            3579999999999999999998874 7888887653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=96.93  E-value=0.011  Score=50.89  Aligned_cols=90  Identities=13%  Similarity=0.183  Sum_probs=57.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ++.||+|+|+.|.||..+++.+... ++++.. +|++..                   .+.++++.      ++|+||.+
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~-G~~V~~-~~~~~~-------------------~~~~~~~~------~aDvVila   72 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRAS-GYPISI-LDREDW-------------------AVAESILA------NADVVIVS   72 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTT-TCCEEE-ECTTCG-------------------GGHHHHHT------TCSEEEEC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhC-CCeEEE-EECCcc-------------------cCHHHHhc------CCCEEEEe
Confidence            4569999993399999999998764 666553 454310                   13455554      79999977


Q ss_pred             cCchhHHHHHHHHHH---CCCcEEEeCCCCCHHHHHHHHHH
Q 027650          114 TDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAF  151 (220)
Q Consensus       114 T~p~~~~~~~~~al~---~G~~vVigTtG~~~e~~~~L~~a  151 (220)
                      .+|....+.+.....   .+. +|+-.++......+.+.+.
T Consensus        73 vp~~~~~~vl~~l~~~l~~~~-iv~~~~svk~~~~~~~~~~  112 (298)
T 2pv7_A           73 VPINLTLETIERLKPYLTENM-LLADLTSVKREPLAKMLEV  112 (298)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTS-EEEECCSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcCCCc-EEEECCCCCcHHHHHHHHh
Confidence            777776666655432   343 5555556655555555443

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.92  E-value=0.0024  Score=54.02  Aligned_cols=125  Identities=15%  Similarity=0.189  Sum_probs=70.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcc----hhhhhcCCCCCCccc----cCC---HHHHHhcccc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGED----IGMVCDMEQPLEIPV----MSD---LTMVLGSISQ  103 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d----~g~l~g~~~~~gv~v----~~d---l~~~l~~~~~  103 (220)
                      |+||.|.|++|.+|+.+++.+.+. +.+++++..+...+.+    ...+..+. ..++.+    .+|   +.+++.    
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~l~~~~~----   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALVRKTITAANPETKEELIDNYQ-SLGVILLEGDINDHETLVKAIK----   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEECCSCCSSCHHHHHHHHHHHH-HTTCEEEECCTTCHHHHHHHHT----
T ss_pred             CcEEEEECCCchHHHHHHHHHHhC-CCcEEEEECCCcccCChHHHHHHHHHHH-hCCCEEEEeCCCCHHHHHHHHh----
Confidence            678999999999999999998875 6788765543201111    11110000 112222    223   445554    


Q ss_pred             CCCccEEEEccCc---hhHHHHHHHHHHCC-CcEEEeCC-CCC--------H-----HHHHHHHHHhhhcCceEE-EcCC
Q 027650          104 SKARAVVIDFTDA---STVYDNVKQATAFG-MRSVVYVP-HIQ--------L-----ETVSALSAFCDKASMGCL-IAPT  164 (220)
Q Consensus       104 ~~~~DVVIDfT~p---~~~~~~~~~al~~G-~~vVigTt-G~~--------~-----e~~~~L~~aA~~~~v~vv-iapN  164 (220)
                        ++|+||.++.+   ......+..+.++| +.-++-.. |.+        +     .....++++.++.++++. +.|+
T Consensus        76 --~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g~~~~~~~~~~p~~~~y~sK~~~e~~~~~~~i~~~~lrp~  153 (307)
T 2gas_A           76 --QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFGLDVDRHDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCH  153 (307)
T ss_dssp             --TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTHHHHHHHHHHHHHHHHHHTCCBEEEECC
T ss_pred             --CCCEEEECCcccccccHHHHHHHHHhcCCceEEeecccccCcccccCCCcchhHHHHHHHHHHHHHHcCCCeEEEEcc
Confidence              79999987653   34456677888888 65555322 311        1     123345666666666654 4565


Q ss_pred             CcH
Q 027650          165 LSI  167 (220)
Q Consensus       165 fS~  167 (220)
                      +-.
T Consensus       154 ~~~  156 (307)
T 2gas_A          154 AFT  156 (307)
T ss_dssp             EET
T ss_pred             eee
Confidence            433

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.90  E-value=0.0043  Score=53.46  Aligned_cols=89  Identities=21%  Similarity=0.209  Sum_probs=52.6

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ..++||.|.|++|.+|+.+++.+.+. +.+++++..... ...+..+     ..++.-.+++++++.      ++|+||.
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~-~~~~~~~-----~~Dl~d~~~~~~~~~------~~d~vih   83 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQ-GRTVRGFDLRPS-GTGGEEV-----VGSLEDGQALSDAIM------GVSAVLH   83 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHT-TCCEEEEESSCC-SSCCSEE-----ESCTTCHHHHHHHHT------TCSEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCC-CCCccEE-----ecCcCCHHHHHHHHh------CCCEEEE
Confidence            34579999999999999999999875 788887654321 1111100     011111233455564      7999998


Q ss_pred             ccCch----------------hHHHHHHHHHHCCC-cEE
Q 027650          113 FTDAS----------------TVYDNVKQATAFGM-RSV  134 (220)
Q Consensus       113 fT~p~----------------~~~~~~~~al~~G~-~vV  134 (220)
                      +..+.                .....++.|.+.|+ ++|
T Consensus        84 ~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V  122 (347)
T 4id9_A           84 LGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFV  122 (347)
T ss_dssp             CCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEE
T ss_pred             CCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence            65321                22445677778886 444

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.87  E-value=0.0049  Score=52.74  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=29.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      |||.|.|++|.+|+.+++.+.+.++.+++++..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r   33 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence            589999999999999999998876889887654

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.86  E-value=0.0021  Score=54.03  Aligned_cols=83  Identities=19%  Similarity=0.249  Sum_probs=52.0

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ....+||.|+|++|.+|+.+++.+.+. +.+++++ ++..     +++         .-.+++++++..    .++|+||
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~-----~Dl---------~d~~~~~~~~~~----~~~d~vi   68 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGK-NVEVIPT-DVQD-----LDI---------TNVLAVNKFFNE----KKPNVVI   68 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTS-SEEEEEE-CTTT-----CCT---------TCHHHHHHHHHH----HCCSEEE
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhC-CCeEEec-cCcc-----CCC---------CCHHHHHHHHHh----cCCCEEE
Confidence            345679999999999999999998864 7888775 3321     111         112345555542    1699999


Q ss_pred             EccCch------------------hHHHHHHHHHHCCCcEE
Q 027650          112 DFTDAS------------------TVYDNVKQATAFGMRSV  134 (220)
Q Consensus       112 DfT~p~------------------~~~~~~~~al~~G~~vV  134 (220)
                      .+....                  .....++.|.+.|.++|
T Consensus        69 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv  109 (292)
T 1vl0_A           69 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIV  109 (292)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEE
T ss_pred             ECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            875321                  12345566777777666

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.85  E-value=0.0032  Score=53.27  Aligned_cols=34  Identities=26%  Similarity=0.247  Sum_probs=28.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd   68 (220)
                      ++||.|.|++|.+|+.+++.+.+. ++.+++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r   36 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDI   36 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            468999999999999999999876 5788887654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.83  E-value=0.0013  Score=49.85  Aligned_cols=126  Identities=13%  Similarity=0.163  Sum_probs=68.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAV  109 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DV  109 (220)
                      .|.+|+|+|+ |++|+.+++.+.+. +.++++ +|++.  ..+..+..    .++.+ +   ++.+.+.. . ...++|+
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~-g~~V~~-id~~~--~~~~~~~~----~~~~~~~gd~~~~~~l~~-~-~~~~~d~   73 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAA-GKKVLA-VDKSK--EKIELLED----EGFDAVIADPTDESFYRS-L-DLEGVSA   73 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHT-TCCEEE-EESCH--HHHHHHHH----TTCEEEECCTTCHHHHHH-S-CCTTCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHC-CCeEEE-EECCH--HHHHHHHH----CCCcEEECCCCCHHHHHh-C-CcccCCE
Confidence            3568999998 99999999998864 778775 55431  11222211    12221 1   23332221 0 0136899


Q ss_pred             EEEccCchhH-HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650          110 VIDFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (220)
Q Consensus       110 VIDfT~p~~~-~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~  175 (220)
                      ||..+..+.. ......+.+.|...|+.. ..+++..+.|+    +.|+..++.|....+-.+...+
T Consensus        74 vi~~~~~~~~n~~~~~~a~~~~~~~iia~-~~~~~~~~~l~----~~G~~~vi~p~~~~~~~l~~~i  135 (141)
T 3llv_A           74 VLITGSDDEFNLKILKALRSVSDVYAIVR-VSSPKKKEEFE----EAGANLVVLVADAVKQAFMDKI  135 (141)
T ss_dssp             EEECCSCHHHHHHHHHHHHHHCCCCEEEE-ESCGGGHHHHH----HTTCSEEEEHHHHHHHHHHHHH
T ss_pred             EEEecCCHHHHHHHHHHHHHhCCceEEEE-EcChhHHHHHH----HcCCCEEECHHHHHHHHHHHHH
Confidence            8855553333 233344445554333322 23344444443    4678888988877777555443

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.83  E-value=0.0052  Score=53.53  Aligned_cols=35  Identities=14%  Similarity=0.176  Sum_probs=30.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd   68 (220)
                      .++||.|.|++|.+|+.+++.+.+. .+.+++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            3579999999999999999999875 6899998764

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.83  E-value=0.0046  Score=55.22  Aligned_cols=68  Identities=18%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -..++|+|+|. |+||+.+++.+.. -++++.+ +|+... .....      ..|+..+.++++++.      .+|+|+.
T Consensus       166 l~g~tvGIIG~-G~IG~~vA~~l~~-~G~~V~~-~d~~~~-~~~~~------~~g~~~~~~l~ell~------~aDvV~l  229 (347)
T 1mx3_A          166 IRGETLGIIGL-GRVGQAVALRAKA-FGFNVLF-YDPYLS-DGVER------ALGLQRVSTLQDLLF------HSDCVTL  229 (347)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHT-TTCEEEE-ECTTSC-TTHHH------HHTCEECSSHHHHHH------HCSEEEE
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHH-CCCEEEE-ECCCcc-hhhHh------hcCCeecCCHHHHHh------cCCEEEE
Confidence            34468999996 9999999998876 4888765 675321 11111      224444568999986      6999996


Q ss_pred             ccCc
Q 027650          113 FTDA  116 (220)
Q Consensus       113 fT~p  116 (220)
                      ..+.
T Consensus       230 ~~P~  233 (347)
T 1mx3_A          230 HCGL  233 (347)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            6543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.82  E-value=0.0041  Score=53.65  Aligned_cols=34  Identities=26%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .|++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r   53 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLER-GDKVVGIDN   53 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEEC
Confidence            4679999999999999999998874 788887654

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.82  E-value=0.00031  Score=62.87  Aligned_cols=93  Identities=14%  Similarity=0.083  Sum_probs=60.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCC--ccccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLE--IPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~~g--v~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..+|+|+|+ |.||+.+++.+....+.+-+.+++++.  ..+.++... ....|  +.+++++++++.      ++|+||
T Consensus       129 ~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~--~~a~~la~~~~~~~g~~~~~~~~~~eav~------~aDiVi  199 (350)
T 1x7d_A          129 ARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDP--LATAKLIANLKEYSGLTIRRASSVAEAVK------GVDIIT  199 (350)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHTTCTTCEEEECSSHHHHHT------TCSEEE
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHHHHHhccCceEEEeCCHHHHHh------cCCEEE
Confidence            458999997 999999999887656777888898742  122222210 00114  455789999886      799999


Q ss_pred             EccCchhHHHHH-HHHHHCCCcEEEe
Q 027650          112 DFTDASTVYDNV-KQATAFGMRSVVY  136 (220)
Q Consensus       112 DfT~p~~~~~~~-~~al~~G~~vVig  136 (220)
                      -+|+...+.+.+ ...++.|.+++.-
T Consensus       200 ~aTps~~~~pvl~~~~l~~G~~V~~v  225 (350)
T 1x7d_A          200 TVTADKAYATIITPDMLEPGMHLNAV  225 (350)
T ss_dssp             ECCCCSSEEEEECGGGCCTTCEEEEC
T ss_pred             EeccCCCCCceecHHHcCCCCEEEEC
Confidence            666543211111 2456789988853

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=96.80  E-value=0.0044  Score=53.46  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=28.5

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      -.++||.|+|++|.+|+.+++.+.+. +.+++++..
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r   59 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMD-GHEVTVVDN   59 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHC-CCEEEEEeC
Confidence            34579999999999999999998874 788887654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.80  E-value=0.0025  Score=56.50  Aligned_cols=87  Identities=17%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -..++|+|+|+ |+||+.+++.+... ++++. ++|+... .+...      ..|+.. .++++++.      ++|+|+.
T Consensus       144 l~g~~vgIIG~-G~iG~~vA~~l~~~-G~~V~-~~d~~~~-~~~~~------~~g~~~-~~l~e~l~------~aDiVil  206 (333)
T 2d0i_A          144 LYGKKVGILGM-GAIGKAIARRLIPF-GVKLY-YWSRHRK-VNVEK------ELKARY-MDIDELLE------KSDIVIL  206 (333)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGG-TCEEE-EECSSCC-HHHHH------HHTEEE-CCHHHHHH------HCSEEEE
T ss_pred             CCcCEEEEEcc-CHHHHHHHHHHHHC-CCEEE-EECCCcc-hhhhh------hcCcee-cCHHHHHh------hCCEEEE
Confidence            34468999996 99999999988754 78876 4665421 11111      123433 48888886      6999996


Q ss_pred             ccCch-hH----HHHHHHHHHCCCcEEEeCC
Q 027650          113 FTDAS-TV----YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       113 fT~p~-~~----~~~~~~al~~G~~vVigTt  138 (220)
                      ..++. .+    .+.....++.|  ++|-+.
T Consensus       207 ~vp~~~~t~~~i~~~~~~~mk~g--ilin~s  235 (333)
T 2d0i_A          207 ALPLTRDTYHIINEERVKKLEGK--YLVNIG  235 (333)
T ss_dssp             CCCCCTTTTTSBCHHHHHHTBTC--EEEECS
T ss_pred             cCCCChHHHHHhCHHHHhhCCCC--EEEECC
Confidence            66544 11    12333456667  555554

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.80  E-value=0.0024  Score=54.36  Aligned_cols=100  Identities=16%  Similarity=0.210  Sum_probs=53.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC--C-----CCCccccCCHHHHHhccccC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME--Q-----PLEIPVMSDLTMVLGSISQS  104 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~--g~~--~-----~~gv~v~~dl~~~l~~~~~~  104 (220)
                      .||||+|+|+ |.||..++..+.+. +.++.. ++++.  .....+.  |..  .     ...+.++ +.+++...   .
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~-g~~V~~-~~r~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~---~   72 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQG-GNDVTL-IDQWP--AHIEAIRKNGLIADFNGEEVVANLPIF-SPEEIDHQ---N   72 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSCH--HHHHHHHHHCEEEEETTEEEEECCCEE-CGGGCCTT---S
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhC-CCcEEE-EECCH--HHHHHHHhCCEEEEeCCCeeEecceee-cchhhccc---C
Confidence            4679999997 99999999988764 677664 55421  1122111  100  0     0011111 22222210   0


Q ss_pred             CCccEEEEccCchhHHHHHHHHH---HCCCcEEEeCCCCCH
Q 027650          105 KARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQL  142 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTtG~~~  142 (220)
                      .++|+||.++.+....+.+....   ..+..+|.-++|++.
T Consensus        73 ~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~  113 (316)
T 2ew2_A           73 EQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGH  113 (316)
T ss_dssp             CCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred             CCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence            27899996666665555554433   235556665568763

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.78  E-value=0.0056  Score=51.47  Aligned_cols=94  Identities=19%  Similarity=0.160  Sum_probs=54.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC----ccc-cCCHHHHHhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE----IPV-MSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g----v~v-~~dl~~~l~~~~~~~~~DVV  110 (220)
                      |||+|+|+ |.||..++..+.+. +.++.. ++++.  .....+...+ ..+    ..+ .++. +.+.      ++|+|
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~-g~~V~~-~~r~~--~~~~~l~~~~-~~~~~~~~~~~~~~~-~~~~------~~d~v   67 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQ-GHEVQG-WLRVP--QPYCSVNLVE-TDGSIFNESLTANDP-DFLA------TSDLL   67 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSSC--CSEEEEEEEC-TTSCEEEEEEEESCH-HHHH------TCSEE
T ss_pred             CeEEEECc-CHHHHHHHHHHHhC-CCCEEE-EEcCc--cceeeEEEEc-CCCceeeeeeeecCc-cccC------CCCEE
Confidence            58999997 99999999988764 677665 55532  1111111100 011    111 3444 4444      79999


Q ss_pred             EEccCchhHHHHHHHHH---HCCCcEEEeCCCCCH
Q 027650          111 IDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQL  142 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al---~~G~~vVigTtG~~~  142 (220)
                      |-++.+..+.+.+....   ..+..+|.-+.|++.
T Consensus        68 i~~v~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           68 LVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             EECSCGGGHHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             EEEecHHhHHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence            97766666555554433   235666766677743

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.78  E-value=0.0084  Score=52.75  Aligned_cols=35  Identities=23%  Similarity=0.161  Sum_probs=29.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .|+||.|.|++|.+|+.+++.+.+. +.+++++...
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~   62 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHE-GHYVIASDWK   62 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEECC
Confidence            5689999999999999999998874 7888876543

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.78  E-value=0.00054  Score=58.13  Aligned_cols=107  Identities=11%  Similarity=0.077  Sum_probs=63.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (220)
                      ||+|+|+ |+||+.+++.+.+. +++ +.+++++.  ..+.++..   ..+.. +++++++ .      ++|+||..|++
T Consensus       118 ~v~iiG~-G~~g~~~a~~l~~~-g~~-v~v~~r~~--~~~~~l~~---~~~~~-~~~~~~~-~------~~Divi~~tp~  181 (263)
T 2d5c_A          118 PALVLGA-GGAGRAVAFALREA-GLE-VWVWNRTP--QRALALAE---EFGLR-AVPLEKA-R------EARLLVNATRV  181 (263)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHT-TCC-EEEECSSH--HHHHHHHH---HHTCE-ECCGGGG-G------GCSEEEECSST
T ss_pred             eEEEECC-cHHHHHHHHHHHHC-CCE-EEEEECCH--HHHHHHHH---Hhccc-hhhHhhc-c------CCCEEEEccCC
Confidence            8999997 99999999998875 555 45677642  22223321   12223 5677776 5      79999977765


Q ss_pred             hhHH---HHH-HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          117 STVY---DNV-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       117 ~~~~---~~~-~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      ..+.   ..+ ...++.|..++ -. +.++.+. +|.+.+++.|..++  ++
T Consensus       182 ~~~~~~~~~l~~~~l~~g~~vi-D~-~~~p~~t-~l~~~a~~~g~~~v--~g  228 (263)
T 2d5c_A          182 GLEDPSASPLPAELFPEEGAAV-DL-VYRPLWT-RFLREAKAKGLKVQ--TG  228 (263)
T ss_dssp             TTTCTTCCSSCGGGSCSSSEEE-ES-CCSSSSC-HHHHHHHHTTCEEE--CS
T ss_pred             CCCCCCCCCCCHHHcCCCCEEE-Ee-ecCCccc-HHHHHHHHCcCEEE--Cc
Confidence            5321   111 23456676554 32 2222222 46777787777544  55

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.81  E-value=0.00021  Score=58.85  Aligned_cols=92  Identities=11%  Similarity=0.063  Sum_probs=54.4

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .+.+||+|+|+ |+||+.+++.+.+. +.++. ++++...   ...+.    ..++... ++++++.      .+|+||-
T Consensus        17 ~~~~~I~iIG~-G~mG~~la~~L~~~-G~~V~-~~~r~~~---~~~~~----~~g~~~~-~~~~~~~------~aDvVil   79 (201)
T 2yjz_A           17 EKQGVVCIFGT-GDFGKSLGLKMLQC-GYSVV-FGSRNPQ---VSSLL----PRGAEVL-CYSEAAS------RSDVIVL   79 (201)
Confidence            34579999997 99999999988754 56655 4555321   11221    2345545 6777664      7999986


Q ss_pred             ccCchhHHHHHHH-HHHCCCcEEEeCCCCC
Q 027650          113 FTDASTVYDNVKQ-ATAFGMRSVVYVPHIQ  141 (220)
Q Consensus       113 fT~p~~~~~~~~~-al~~G~~vVigTtG~~  141 (220)
                      ++++....+.+.. ....|.-+|.-.+|.+
T Consensus        80 av~~~~~~~v~~l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           80 AVHREHYDFLAELADSLKGRVLIDVSNNQK  109 (201)
Confidence            6665543333211 1223554554455764

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.73  E-value=0.0039  Score=52.95  Aligned_cols=87  Identities=15%  Similarity=0.164  Sum_probs=49.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ++||.|.|++|.+|+.+++.+.+. +.+++++..+...+   + +.    ..++.-.+++++++..    .++|+||.+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~---~-~~----~~Dl~d~~~~~~~~~~----~~~d~vih~A   68 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQN-NWHAVGCGFRRARP---K-FE----QVNLLDSNAVHHIIHD----FQPHVIVHCA   68 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEC--------------------------CHHHHHH----HCCSEEEECC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhC-CCeEEEEccCCCCC---C-eE----EecCCCHHHHHHHHHh----hCCCEEEECC
Confidence            368999999999999999998874 78888764321110   1 11    1122223455666652    2589999875


Q ss_pred             Cch------------------hHHHHHHHHHHCCCcEE
Q 027650          115 DAS------------------TVYDNVKQATAFGMRSV  134 (220)
Q Consensus       115 ~p~------------------~~~~~~~~al~~G~~vV  134 (220)
                      ...                  .....++.|.+.|.++|
T Consensus        69 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  106 (315)
T 2ydy_A           69 AERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLI  106 (315)
T ss_dssp             -------------------CHHHHHHHHHHHHHTCEEE
T ss_pred             cccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence            321                  12345667777787765

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.72  E-value=0.0088  Score=53.35  Aligned_cols=104  Identities=14%  Similarity=0.071  Sum_probs=53.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -..++|+|+|. |+||+.+++.+.. -++++. ++|+... .          ..+...+.++++++.      .+|+|+-
T Consensus       169 l~gktiGIIGl-G~IG~~vA~~l~~-~G~~V~-~~dr~~~-~----------~~~~~~~~sl~ell~------~aDvVil  228 (340)
T 4dgs_A          169 PKGKRIGVLGL-GQIGRALASRAEA-FGMSVR-YWNRSTL-S----------GVDWIAHQSPVDLAR------DSDVLAV  228 (340)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHT-TTCEEE-EECSSCC-T----------TSCCEECSSHHHHHH------TCSEEEE
T ss_pred             ccCCEEEEECC-CHHHHHHHHHHHH-CCCEEE-EEcCCcc-c----------ccCceecCCHHHHHh------cCCEEEE
Confidence            33469999996 9999999999875 488876 4665321 1          112344679999987      7999985


Q ss_pred             ccCc-hhHH----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCc
Q 027650          113 FTDA-STVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (220)
Q Consensus       113 fT~p-~~~~----~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v  157 (220)
                      ..+. ..+.    +.....++.|.-+|--..|--.+ .+.|.++.++..+
T Consensus       229 ~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvd-e~aL~~aL~~g~i  277 (340)
T 4dgs_A          229 CVAASAATQNIVDASLLQALGPEGIVVNVARGNVVD-EDALIEALKSGTI  277 (340)
T ss_dssp             CC----------CHHHHHHTTTTCEEEECSCC---------------CCS
T ss_pred             eCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccC-HHHHHHHHHcCCc
Confidence            4431 1122    22233445555444333343222 2445555555444

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.72  E-value=0.0034  Score=55.94  Aligned_cols=70  Identities=13%  Similarity=0.015  Sum_probs=46.6

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -...+|+|+|+ |+||+.+++.+...-++++.+ +|+...  ......    ..|+...+++++++.      .+|+|+.
T Consensus       161 l~g~~vgIIG~-G~IG~~vA~~l~~~~G~~V~~-~d~~~~--~~~~~~----~~g~~~~~~l~ell~------~aDvVil  226 (348)
T 2w2k_A          161 PRGHVLGAVGL-GAIQKEIARKAVHGLGMKLVY-YDVAPA--DAETEK----ALGAERVDSLEELAR------RSDCVSV  226 (348)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCCEEEE-ECSSCC--CHHHHH----HHTCEECSSHHHHHH------HCSEEEE
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHhcCCEEEE-ECCCCc--chhhHh----hcCcEEeCCHHHHhc------cCCEEEE
Confidence            34468999996 999999999887235788764 675421  111111    124444568999886      6999997


Q ss_pred             ccCc
Q 027650          113 FTDA  116 (220)
Q Consensus       113 fT~p  116 (220)
                      ..++
T Consensus       227 ~vp~  230 (348)
T 2w2k_A          227 SVPY  230 (348)
T ss_dssp             CCCC
T ss_pred             eCCC
Confidence            6654

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=96.72  E-value=0.0078  Score=50.36  Aligned_cols=29  Identities=14%  Similarity=0.288  Sum_probs=24.5

Q ss_pred             CCCCCceEEEEcCCCHHHHHHHHHHHhcC
Q 027650           31 PPQSNIKVIINGAVKEIGRAAVIAVTKAR   59 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~   59 (220)
                      +.-+|+||.|+|++|.+|+.+++.+.+..
T Consensus         2 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g   30 (319)
T 4b8w_A            2 LYFQSMRILVTGGSGLVGKAIQKVVADGA   30 (319)
T ss_dssp             CCCCCCEEEEETCSSHHHHHHHHHHHTTT
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhcC
Confidence            33457899999999999999999998753

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.72  E-value=0.0068  Score=51.97  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=28.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .+++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r   37 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAH-GYDVVIADN   37 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHC-CCcEEEEec
Confidence            4579999999999999999998875 888887543

>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}

Probab=96.71  E-value=0.012  Score=53.53  Aligned_cols=139  Identities=12%  Similarity=0.153  Sum_probs=81.6

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHh--------------------cCCcEEEEEEec--CCCCcchhhhhcC--------
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTK--------------------ARGMEVAGAIDS--HSVGEDIGMVCDM--------   82 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~--------------------~~~~eLvg~vd~--~~~g~d~g~l~g~--------   82 (220)
                      -.|+||+|+|. |+.++.++.-+..                    .+|.+++|++|-  .+.|+++.+..-.        
T Consensus        11 ~~mIrVaIvGv-GnvASTlvqGv~~~r~g~~~~~G~p~~~~~p~~~~Di~vvgg~DId~~kvgk~l~eAi~~~~n~~~~~   89 (394)
T 3cin_A           11 HHMVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSL   89 (394)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCC
T ss_pred             cceeEEEEecC-CHHHHHHHHHHHHHHcCCCCCccccccccCCCCCCCcEEEEEecCCcchhHHHHHHHHhhchhccccc
Confidence            36899999997 9999999876642                    136689999994  4567776543210        


Q ss_pred             CC--C----------CCc-------ccc----CCHHHHHhccccCCCccEEEEccC------ch----------------
Q 027650           83 EQ--P----------LEI-------PVM----SDLTMVLGSISQSKARAVVIDFTD------AS----------------  117 (220)
Q Consensus        83 ~~--~----------~gv-------~v~----~dl~~~l~~~~~~~~~DVVIDfT~------p~----------------  117 (220)
                      ..  .          .+.       ...    ++.+++..++ ++.+.||||...+      +.                
T Consensus        90 ~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~i~~~~k~~-~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~~  168 (394)
T 3cin_A           90 TSDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEW-TELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKER  168 (394)
T ss_dssp             SSCCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHH-HHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTT
T ss_pred             cCccccccCcccccccCcCccccchhhhhhHHHhHHHHHHHh-hhccceeEeeecccccCCCCCCHHHHHHHhhcccccc
Confidence            00  0          000       000    1122221110 1136788887422      11                


Q ss_pred             --hHHHHHHHHH-----HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650          118 --TVYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (220)
Q Consensus       118 --~~~~~~~~al-----~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~  175 (220)
                        +..-++..|+     +.|++.|-++|-+... ...+.+.++++|+|++=.= |-.|..++...
T Consensus       169 i~as~~YA~AAl~~aa~~aG~~fvN~~P~~ia~-~P~~~ela~~~gvpi~GdD-~ktG~T~~k~~  231 (394)
T 3cin_A          169 LTATQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLVVFGDD-GATGATPFTAD  231 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEECSS-BSCSHHHHHHH
T ss_pred             CChhHHHHHHHHHhhhhhcCCceecCCCccccC-cHHHHHHHHHcCCcEeccc-ccccchhHHHH
Confidence              1112233444     8999999999976532 1457888889888877433 78888776543

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=96.71  E-value=0.0054  Score=52.11  Aligned_cols=69  Identities=16%  Similarity=0.193  Sum_probs=40.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCC-CCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DME-QPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~-g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      |+||.|.|++|.+|+.+++.+.+. + .++.+.++.. +. ...+. +.. -..++.- +++.+++.      ++|+||.
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~-g-~~v~~~~~~~-~~-~~~~~~~~~~~~~Dl~~-~~~~~~~~------~~d~vih   69 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSES-N-EIVVIDNLSS-GN-EEFVNEAARLVKADLAA-DDIKDYLK------GAEEVWH   69 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTT-S-CEEEECCCSS-CC-GGGSCTTEEEECCCTTT-SCCHHHHT------TCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhC-C-CEEEEEcCCC-CC-hhhcCCCcEEEECcCCh-HHHHHHhc------CCCEEEE
Confidence            679999999999999999999875 4 6666554321 11 11000 000 0112222 45666765      7999998


Q ss_pred             cc
Q 027650          113 FT  114 (220)
Q Consensus       113 fT  114 (220)
                      +.
T Consensus        70 ~a   71 (313)
T 3ehe_A           70 IA   71 (313)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=96.71  E-value=0.0025  Score=53.67  Aligned_cols=82  Identities=12%  Similarity=0.101  Sum_probs=51.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||.|.|++|.+|+.+++.+.  .+.+++++. +...      ..    ..++.-.+++++++..    .++|+||.+..
T Consensus         1 m~ilVtGatG~iG~~l~~~L~--~g~~V~~~~-r~~~------~~----~~D~~d~~~~~~~~~~----~~~d~vih~a~   63 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA--PVGNLIALD-VHSK------EF----CGDFSNPKGVAETVRK----LRPDVIVNAAA   63 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT--TTSEEEEEC-TTCS------SS----CCCTTCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh--cCCeEEEec-cccc------cc----cccCCCHHHHHHHHHh----cCCCEEEECcc
Confidence            489999999999999999988  488988754 3210      00    1111112345556641    24999998753


Q ss_pred             ch------------------hHHHHHHHHHHCCCcEE
Q 027650          116 AS------------------TVYDNVKQATAFGMRSV  134 (220)
Q Consensus       116 p~------------------~~~~~~~~al~~G~~vV  134 (220)
                      ..                  .....++.|.+.|+++|
T Consensus        64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v  100 (299)
T 1n2s_A           64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVV  100 (299)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEE
T ss_pred             cCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence            21                  12344566667777765

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.71  E-value=0.0093  Score=52.90  Aligned_cols=103  Identities=10%  Similarity=-0.000  Sum_probs=62.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ..++|+|+|+ |+||+.+++.+.. -++++.+ +|+...  .         ..++..+.++++++.      ++|+|+..
T Consensus       163 ~g~~vgIIG~-G~iG~~vA~~l~~-~G~~V~~-~dr~~~--~---------~~g~~~~~~l~ell~------~aDvVil~  222 (333)
T 3ba1_A          163 SGKRVGIIGL-GRIGLAVAERAEA-FDCPISY-FSRSKK--P---------NTNYTYYGSVVELAS------NSDILVVA  222 (333)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHT-TTCCEEE-ECSSCC--T---------TCCSEEESCHHHHHH------TCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHH-CCCEEEE-ECCCch--h---------ccCceecCCHHHHHh------cCCEEEEe
Confidence            3468999997 9999999998875 4788764 665321  1         113345678999886      79999966


Q ss_pred             cCchh-HH----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCc
Q 027650          114 TDAST-VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (220)
Q Consensus       114 T~p~~-~~----~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v  157 (220)
                      .++.. +.    +.....++.|.-+|--..|...++ +.|.++.++.++
T Consensus       223 vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~-~aL~~aL~~g~i  270 (333)
T 3ba1_A          223 CPLTPETTHIINREVIDALGPKGVLINIGRGPHVDE-PELVSALVEGRL  270 (333)
T ss_dssp             SCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCH-HHHHHHHHHTSS
T ss_pred             cCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCH-HHHHHHHHcCCC
Confidence            65432 21    223345566665554334432222 445555555444

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.71  E-value=0.0056  Score=52.33  Aligned_cols=38  Identities=13%  Similarity=0.191  Sum_probs=28.8

Q ss_pred             CCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |.+.++||.|.|++|.+|+.+++.+.+. +.+++++...
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~   47 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEK-GYRVHGLVAR   47 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHC-CCeEEEEeCC
Confidence            4567789999999999999999998874 7898876543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.66  E-value=0.017  Score=47.03  Aligned_cols=122  Identities=15%  Similarity=0.144  Sum_probs=65.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCCCCcchhhhhcCC-CCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~~g~d~g~l~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ++|.|.|++|.+|+.+++.+.+. +.  +++++..+........ ..+.. -..++.-.++++++++      ++|+||.
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~-G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~------~~d~vi~   90 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDDYASAFQ------GHDVGFC   90 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGGGGGGGS------SCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHcC-CCCCEEEEEEcCCCCccccc-cCCceEEecCcCCHHHHHHHhc------CCCEEEE
Confidence            58999999999999999999875 55  8877654321111100 00000 0011111234445553      7999998


Q ss_pred             ccCch---------------hHHHHHHHHHHCCC-cEE-EeCCC-C----C--HHHHHHHHHHhhhcCce-E-EEcCCC
Q 027650          113 FTDAS---------------TVYDNVKQATAFGM-RSV-VYVPH-I----Q--LETVSALSAFCDKASMG-C-LIAPTL  165 (220)
Q Consensus       113 fT~p~---------------~~~~~~~~al~~G~-~vV-igTtG-~----~--~e~~~~L~~aA~~~~v~-v-viapNf  165 (220)
                      +....               .....++.+.+.|. ++| +++.+ +    +  ......++.+.+..+.. + ++.|.+
T Consensus        91 ~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~vrpg~  169 (242)
T 2bka_A           91 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGV  169 (242)
T ss_dssp             CCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTTCSSHHHHHHHHHHHHHHTTCCSEEEEEECCE
T ss_pred             CCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCCCcchHHHHHHHHHHHHHhcCCCCeEEEcCce
Confidence            75421               22344556667775 444 33332 2    1  12334566666666652 3 345554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.66  E-value=0.011  Score=53.88  Aligned_cols=120  Identities=13%  Similarity=0.146  Sum_probs=70.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV  110 (220)
                      .++|+|+|+ |++|+.+++.+.+ .+.+++. +|.+.  ..+..+.    ..|+++ +   ++.+.+.. .+ -.++|+|
T Consensus         4 ~~~viIiG~-Gr~G~~va~~L~~-~g~~vvv-Id~d~--~~v~~~~----~~g~~vi~GDat~~~~L~~-ag-i~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGF-GRFGQITGRLLLS-SGVKMVV-LDHDP--DHIETLR----KFGMKVFYGDATRMDLLES-AG-AAKAEVL   72 (413)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHH-TTCCEEE-EECCH--HHHHHHH----HTTCCCEESCTTCHHHHHH-TT-TTTCSEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-CCCCEEE-EECCH--HHHHHHH----hCCCeEEEcCCCCHHHHHh-cC-CCccCEE
Confidence            468999997 9999999999876 4777775 56431  1122221    223333 2   23332221 10 1368988


Q ss_pred             EEccCchhH-HHHHHHHHHCCCc--EEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH
Q 027650          111 IDFTDASTV-YDNVKQATAFGMR--SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (220)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G~~--vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l  171 (220)
                      |-.+..+.. ...+..+.+.+.+  +|+  -..+++....|.+    .|+-.++.|.|-.+..+
T Consensus        73 iv~~~~~~~n~~i~~~ar~~~p~~~Iia--ra~~~~~~~~L~~----~Gad~Vi~~~~~~a~~l  130 (413)
T 3l9w_A           73 INAIDDPQTNLQLTEMVKEHFPHLQIIA--RARDVDHYIRLRQ----AGVEKPERETFEGALKT  130 (413)
T ss_dssp             EECCSSHHHHHHHHHHHHHHCTTCEEEE--EESSHHHHHHHHH----TTCSSCEETTHHHHHHH
T ss_pred             EECCCChHHHHHHHHHHHHhCCCCeEEE--EECCHHHHHHHHH----CCCCEEECccHHHHHHH
Confidence            855543333 4455566666544  443  2355666666654    66777888998777765

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.65  E-value=0.0044  Score=52.10  Aligned_cols=33  Identities=30%  Similarity=0.418  Sum_probs=27.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |+||.|+|+ |.+|+.+++.+.+. +.+++++..+
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~~-g~~V~~~~r~   35 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTAQ-GHEVTGLRRS   35 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHT-TCCEEEEECT
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            579999995 99999999999875 7888887654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.64  E-value=0.0066  Score=50.82  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=28.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +|+||.|+|+ |.+|+.+++.+.+. +.+++++..+
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~-g~~V~~~~r~   37 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQ-GWRIIGTSRN   37 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGG-TCEEEEEESC
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHC-CCEEEEEEcC
Confidence            5689999998 99999999999875 7898887643

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.64  E-value=0.009  Score=51.68  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=28.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .|+||.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r   59 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDN   59 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeC
Confidence            3579999999999999999998875 788887654

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.64  E-value=0.012  Score=54.04  Aligned_cols=136  Identities=13%  Similarity=0.152  Sum_probs=81.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC-cc-----ccCCHHHHHhcccc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IP-----VMSDLTMVLGSISQ  103 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~g-v~-----v~~dl~~~l~~~~~  103 (220)
                      ..||+|.|. |++|+..++.+.+..+.++|++.|+     +..|-|..++.......+ +.     .+-+.++++.    
T Consensus       209 g~~vaVqG~-GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~----  283 (415)
T 2tmg_A          209 KATVAVQGF-GNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE----  283 (415)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTT----
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhc----
Confidence            469999996 9999999998876469999999996     344556544432110111 10     1224567765    


Q ss_pred             CCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCc---HHHHHH-HHHH
Q 027650          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS---IGSILL-QQAA  176 (220)
Q Consensus       104 ~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS---~Gv~ll-~~~a  176 (220)
                       .++|++|.++..+.. .+++.   +-+..+|++--  .++++-.+.|    +++|+.  +.|.+.   =||..- .+..
T Consensus       284 -~~~DIliP~A~~n~i~~~~a~---~l~ak~V~EgAN~p~t~~a~~~l----~~~Gi~--~~PD~~aNaGGV~~s~~E~v  353 (415)
T 2tmg_A          284 -LDVDILVPAALEGAIHAGNAE---RIKAKAVVEGANGPTTPEADEIL----SRRGIL--VVPDILANAGGVTVSYFEWV  353 (415)
T ss_dssp             -CSCSEEEECSSTTSBCHHHHT---TCCCSEEECCSSSCBCHHHHHHH----HHTTCE--EECHHHHTCHHHHHHHHHHH
T ss_pred             -CCCcEEEecCCcCccCcccHH---HcCCeEEEeCCCcccCHHHHHHH----HHCCCE--EEChHHHhCCCceEEEEEEE
Confidence             489999998876554 34444   44888888765  4565533333    244554  444432   365431 2334


Q ss_pred             HHhcCCCCC
Q 027650          177 ISASFHYKN  185 (220)
Q Consensus       177 ~~~~~~~~d  185 (220)
                      +.....+|+
T Consensus       354 qN~~~~~w~  362 (415)
T 2tmg_A          354 QDLQSFFWD  362 (415)
T ss_dssp             HHHTTCCCC
T ss_pred             ecCccccCC
Confidence            444445555

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=96.63  E-value=0.0095  Score=50.77  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=27.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      |+||.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r   33 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDE-GLSVVVVDN   33 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhC-CCEEEEEeC
Confidence            679999999999999999998874 788887643

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.63  E-value=0.0057  Score=51.98  Aligned_cols=62  Identities=13%  Similarity=0.005  Sum_probs=41.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ++||.|+|++|.+|+.+++.+.+. +.+++++. +...    +         ++.-.+++++++..    .++|+||.+.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~-g~~v~~~~-r~~~----~---------D~~d~~~~~~~~~~----~~~d~vih~a   63 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQR-GDVELVLR-TRDE----L---------NLLDSRAVHDFFAS----ERIDQVYLAA   63 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC-TTEEEECC-CTTT----C---------CTTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhC-CCeEEEEe-cCcc----C---------CccCHHHHHHHHHh----cCCCEEEEcC
Confidence            369999999999999999998764 77877643 3211    1         11112345555542    2699999875


Q ss_pred             C
Q 027650          115 D  115 (220)
Q Consensus       115 ~  115 (220)
                      .
T Consensus        64 ~   64 (321)
T 1e6u_A           64 A   64 (321)
T ss_dssp             C
T ss_pred             e
Confidence            3

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.60  E-value=0.0033  Score=53.85  Aligned_cols=107  Identities=16%  Similarity=0.122  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..||+|+|+ |+||+.+++.+.+. ++++ .+++++.  ..+.++.   +..++.+++++++++.      ++|+||..|
T Consensus       129 ~~~v~iiGa-G~~g~aia~~L~~~-g~~V-~v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~~------~aDiVi~at  194 (275)
T 2hk9_A          129 EKSILVLGA-GGASRAVIYALVKE-GAKV-FLWNRTK--EKAIKLA---QKFPLEVVNSPEEVID------KVQVIVNTT  194 (275)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHH-TCEE-EEECSSH--HHHHHHT---TTSCEEECSCGGGTGG------GCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHc-CCEE-EEEECCH--HHHHHHH---HHcCCeeehhHHhhhc------CCCEEEEeC
Confidence            368999997 99999999998875 5654 5666642  2233343   2446666668877775      799999777


Q ss_pred             CchhHH---HHH-HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          115 DASTVY---DNV-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       115 ~p~~~~---~~~-~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      ++....   +.+ ...++.|..++--.. .    ..++.+.+++.|..++
T Consensus       195 p~~~~~~~~~~i~~~~l~~g~~viDv~~-~----~t~ll~~a~~~g~~~v  239 (275)
T 2hk9_A          195 SVGLKDEDPEIFNYDLIKKDHVVVDIIY-K----ETKLLKKAKEKGAKLL  239 (275)
T ss_dssp             STTSSTTCCCSSCGGGCCTTSEEEESSS-S----CCHHHHHHHHTTCEEE
T ss_pred             CCCCCCCCCCCCCHHHcCCCCEEEEcCC-C----hHHHHHHHHHCcCEEE
Confidence            655421   112 123455654443222 1    1235556666676543

>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A*

Probab=96.57  E-value=0.013  Score=53.11  Aligned_cols=139  Identities=13%  Similarity=0.166  Sum_probs=87.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHH---hc-----------------CCcEEEEEEec--CCCCcchhhhhcCC----CC--
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVT---KA-----------------RGMEVAGAIDS--HSVGEDIGMVCDME----QP--   85 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~---~~-----------------~~~eLvg~vd~--~~~g~d~g~l~g~~----~~--   85 (220)
                      -|.||.|+|. |+..+.++.-+.   +.                 .|+|+|+++|-  .+.|+|+.+..-..    .+  
T Consensus        12 ~~~~~~~~Gv-Gn~ASslvqGie~yk~~~~~~~Gl~~~~~~~y~~~DievvaafDVd~~KVGkdl~eai~~~pn~Vp~~l   90 (394)
T 1vjp_A           12 HMVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLT   90 (394)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCS
T ss_pred             heeeeEEEEe-hHHHHHHHHHHHHHHcCCCCCccccchhccCCCcCceEEEEEEeccccccCCcHHHHHhhCcCCCCccc
Confidence            5789999997 999999887553   21                 13799999994  56788875532110    01  


Q ss_pred             CCcccc-------------------C--CHHHHHhcc---ccCCCccEEEEcc------Cch------------------
Q 027650           86 LEIPVM-------------------S--DLTMVLGSI---SQSKARAVVIDFT------DAS------------------  117 (220)
Q Consensus        86 ~gv~v~-------------------~--dl~~~l~~~---~~~~~~DVVIDfT------~p~------------------  117 (220)
                      .||.+.                   +  +.++..+++   .++.++||||.+.      +..                  
T Consensus        91 ~~V~V~~G~~ldg~~~~~~~~~~~~e~~s~~e~v~~vv~~lk~~~~DVvIn~~STE~~~p~gs~~~l~~ai~~~~~~~i~  170 (394)
T 1vjp_A           91 SDPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLT  170 (394)
T ss_dssp             SCCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCC
T ss_pred             CCCEEEeccccCcccccchhhhccccccchhhHHHHHHHHHHHcCCCEEEEecCccCCCCCCCHHHHHHHHhcCCCCccC
Confidence            222210                   0  111211100   0225799999875      222                  


Q ss_pred             hHHHHHHHHHH-----CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650          118 TVYDNVKQATA-----FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (220)
Q Consensus       118 ~~~~~~~~al~-----~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~  175 (220)
                      +..-++.+|++     .|++.|-++|.+... ...+.++++++|+|++= -.|-.|..++...
T Consensus       171 aS~~YA~AAl~~~~~~aG~~fVN~~P~~ia~-~P~~~ela~~~gvpi~G-DD~ktGqT~lks~  231 (394)
T 1vjp_A          171 ATQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLVVFG-DDGATGATPFTAD  231 (394)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEEC-SSBSCSHHHHHHH
T ss_pred             hHHHHHHHHHhhccccCCcceEecCCccccC-CHHHHHHHHHcCCCEEc-cccCCCCCchHHH
Confidence            23346678899     999999999966421 13578888888888553 3389999887654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.54  E-value=0.0055  Score=53.74  Aligned_cols=107  Identities=16%  Similarity=0.076  Sum_probs=61.6

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -...+|+|+|. |+||+.+++.+... ++++++ +|+...  .. ...    ..|+. +.++++++.      .+|+|+.
T Consensus       140 l~g~~vgIIG~-G~IG~~~A~~l~~~-G~~V~~-~d~~~~--~~-~~~----~~g~~-~~~l~ell~------~aDvVvl  202 (313)
T 2ekl_A          140 LAGKTIGIVGF-GRIGTKVGIIANAM-GMKVLA-YDILDI--RE-KAE----KINAK-AVSLEELLK------NSDVISL  202 (313)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHT-TCEEEE-ECSSCC--HH-HHH----HTTCE-ECCHHHHHH------HCSEEEE
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHHC-CCEEEE-ECCCcc--hh-HHH----hcCce-ecCHHHHHh------hCCEEEE
Confidence            34469999996 99999999998764 788764 665321  11 111    23444 348999886      6999996


Q ss_pred             ccCchh-H---H-HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCc
Q 027650          113 FTDAST-V---Y-DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (220)
Q Consensus       113 fT~p~~-~---~-~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v  157 (220)
                      ..+... .   . +.....++.|.-+|--.+|- ..+.+.|.++.++.++
T Consensus       203 ~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~-~vd~~aL~~aL~~g~i  251 (313)
T 2ekl_A          203 HVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAV-AVNGKALLDYIKKGKV  251 (313)
T ss_dssp             CCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGG-GBCHHHHHHHHHTTCE
T ss_pred             eccCChHHHHhhCHHHHhcCCCCCEEEECCCCc-ccCHHHHHHHHHcCCC
Confidence            554221 1   1 22333455554444323332 1222456666665444

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.52  E-value=0.0025  Score=55.55  Aligned_cols=105  Identities=15%  Similarity=0.132  Sum_probs=61.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC--C----CCC---CccccCCHHHHHhccccCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM--E----QPL---EIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~--~----~~~---gv~v~~dl~~~l~~~~~~~  105 (220)
                      +|||+|+|+ |.||..++..+.+. +.++.. +++... +.+.+ .|+  .    ...   .+.++++++++..      
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~-g~~V~~-~~r~~~-~~i~~-~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~------   70 (320)
T 3i83_A            2 SLNILVIGT-GAIGSFYGALLAKT-GHCVSV-VSRSDY-ETVKA-KGIRIRSATLGDYTFRPAAVVRSAAELET------   70 (320)
T ss_dssp             -CEEEEESC-CHHHHHHHHHHHHT-TCEEEE-ECSTTH-HHHHH-HCEEEEETTTCCEEECCSCEESCGGGCSS------
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhC-CCeEEE-EeCChH-HHHHh-CCcEEeecCCCcEEEeeeeeECCHHHcCC------
Confidence            479999997 99999999988764 667664 454321 11111 010  0    000   2345677776642      


Q ss_pred             CccEEEEccCchhHHHHHHH---HHHCCCcEEEeCCCCCHHHHHHHHHHh
Q 027650          106 ARAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFC  152 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~---al~~G~~vVigTtG~~~e~~~~L~~aA  152 (220)
                      .+|+||-++.+....+.+..   .+..+..+|.-..|+..+  +.|.+..
T Consensus        71 ~~DlVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~--~~l~~~~  118 (320)
T 3i83_A           71 KPDCTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE--PEVAAAF  118 (320)
T ss_dssp             CCSEEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS--HHHHHHS
T ss_pred             CCCEEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH--HHHHHHC
Confidence            79999966665554443333   344566677767788643  2344443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.52  E-value=0.0052  Score=55.17  Aligned_cols=69  Identities=10%  Similarity=0.067  Sum_probs=46.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      -...+|+|+|. |+||+.+++.+... +++ +.+ +|+.....+  ...    ..|+..+.++++++.      .+|+|+
T Consensus       162 l~g~tvgIIG~-G~IG~~vA~~l~~~-G~~~V~~-~d~~~~~~~--~~~----~~g~~~~~~l~ell~------~aDvV~  226 (364)
T 2j6i_A          162 IEGKTIATIGA-GRIGYRVLERLVPF-NPKELLY-YDYQALPKD--AEE----KVGARRVENIEELVA------QADIVT  226 (364)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGG-CCSEEEE-ECSSCCCHH--HHH----HTTEEECSSHHHHHH------TCSEEE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhC-CCcEEEE-ECCCccchh--HHH----hcCcEecCCHHHHHh------cCCEEE
Confidence            34468999996 99999999988764 786 664 665321111  111    234555568999986      799999


Q ss_pred             EccCc
Q 027650          112 DFTDA  116 (220)
Q Consensus       112 DfT~p  116 (220)
                      ...+.
T Consensus       227 l~~P~  231 (364)
T 2j6i_A          227 VNAPL  231 (364)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            66554

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.51  E-value=0.0086  Score=52.74  Aligned_cols=107  Identities=8%  Similarity=-0.003  Sum_probs=60.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ..++|+|+|+ |+||+.+++.+.. -++++. ++|+...  ......    ..|+... ++++++.      ++|+|+..
T Consensus       154 ~g~~vgIIG~-G~iG~~iA~~l~~-~G~~V~-~~d~~~~--~~~~~~----~~g~~~~-~l~e~l~------~aDvVi~~  217 (330)
T 2gcg_A          154 TQSTVGIIGL-GRIGQAIARRLKP-FGVQRF-LYTGRQP--RPEEAA----EFQAEFV-STPELAA------QSDFIVVA  217 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGG-GTCCEE-EEESSSC--CHHHHH----TTTCEEC-CHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHH-CCCEEE-EECCCCc--chhHHH----hcCceeC-CHHHHHh------hCCEEEEe
Confidence            3469999997 9999999998875 478876 4665321  111111    2344444 8888886      69999976


Q ss_pred             cCchhH----H-HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCc
Q 027650          114 TDASTV----Y-DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM  157 (220)
Q Consensus       114 T~p~~~----~-~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v  157 (220)
                      .++...    . +.....++.|.-+|.-.+|- ..+.+.|.++.++.++
T Consensus       218 vp~~~~t~~~i~~~~~~~mk~gailIn~srg~-~v~~~aL~~aL~~~~i  265 (330)
T 2gcg_A          218 CSLTPATEGLCNKDFFQKMKETAVFINISRGD-VVNQDDLYQALASGKI  265 (330)
T ss_dssp             CCCCTTTTTCBSHHHHHHSCTTCEEEECSCGG-GBCHHHHHHHHHHTSS
T ss_pred             CCCChHHHHhhCHHHHhcCCCCcEEEECCCCc-ccCHHHHHHHHHcCCc
Confidence            654311    1 22334455565454333342 1112344544444444

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=96.50  E-value=0.0088  Score=55.66  Aligned_cols=137  Identities=12%  Similarity=0.133  Sum_probs=84.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCc---chhhhhcCCCC-----------C-CccccCCH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGE---DIGMVCDMEQP-----------L-EIPVMSDL   94 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~---d~g~l~g~~~~-----------~-gv~v~~dl   94 (220)
                      ..||+|-|. |++|+..++.+.+. +.++|++.|+     +..|-   ++..+......           + +....+ .
T Consensus       252 g~~vaVqG~-GnVG~~~a~~L~~~-GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~-~  328 (470)
T 2bma_A          252 KQTAVVSGS-GNVALYCVQKLLHL-NVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFP-N  328 (470)
T ss_dssp             GCEEEEECS-SHHHHHHHHHHHHT-TCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECS-S
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHC-CCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEec-C
Confidence            368999996 99999999988764 9999999995     34565   33232211000           0 222221 2


Q ss_pred             HHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCc---HH
Q 027650           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS---IG  168 (220)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS---~G  168 (220)
                      ++++.     .++||++-++.+... .+++...++++..+|+|--  .++++..+.|    +++|  +++.|.+.   =|
T Consensus       329 ~~~~~-----~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~~~L----~~rG--Il~~PD~~aNAGG  397 (470)
T 2bma_A          329 EKPWG-----VPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAINLF----KSNN--IIYCPSKAANAGG  397 (470)
T ss_dssp             CCTTS-----SCCSEEEECSSTTCBCSHHHHHHHHTTCCEEECCSSSCBCHHHHHHH----HHTT--CEEECHHHHTTHH
T ss_pred             cCeee-----cCccEEEeccccCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHHHHHH----HHCC--cEEEChHHhhCCC
Confidence            34454     489999988876655 6888888889999999866  3566543222    3444  55556543   25


Q ss_pred             HHH-HHHHHHHhcCCCCC
Q 027650          169 SIL-LQQAAISASFHYKN  185 (220)
Q Consensus       169 v~l-l~~~a~~~~~~~~d  185 (220)
                      |.. -.+..+.+....|+
T Consensus       398 V~~S~~E~~qn~~~~~w~  415 (470)
T 2bma_A          398 VAISGLEMSQNFQFSHWT  415 (470)
T ss_dssp             HHHHHHHHHHHHTTCCCC
T ss_pred             ceeeHHHhhccccccCCC
Confidence            533 12344445545554

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=96.48  E-value=0.0089  Score=51.15  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=27.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |+||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~-~g~~V~~~~   32 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALS-QGIDLIVFD   32 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CcEEEEeCCCchhHHHHHHHHHh-CCCEEEEEe
Confidence            57999999999999999999887 478888764

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.47  E-value=0.0077  Score=55.91  Aligned_cols=37  Identities=24%  Similarity=0.254  Sum_probs=28.8

Q ss_pred             CCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ++..+.||+|+|+ |.||..++..+... +++++. +|++
T Consensus        50 ~~~~i~kVaVIGa-G~MG~~IA~~la~a-G~~V~l-~D~~   86 (460)
T 3k6j_A           50 EAYDVNSVAIIGG-GTMGKAMAICFGLA-GIETFL-VVRN   86 (460)
T ss_dssp             CCCCCCEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSC
T ss_pred             CcccCCEEEEECC-CHHHHHHHHHHHHC-CCeEEE-EECc
Confidence            3345579999997 99999999988764 888764 5653

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=96.46  E-value=0.00078  Score=59.38  Aligned_cols=89  Identities=10%  Similarity=0.009  Sum_probs=58.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCC-CCccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQP-LEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~-~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ..+|+|+|+ |.||+.+++.+....+.+.+.+++++.  ..+.++... +.. .++. ++++++++ .      +|+||-
T Consensus       125 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~--~~a~~la~~~~~~~~~~~-~~~~~e~v-~------aDvVi~  193 (322)
T 1omo_A          125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVRE--KAAKKFVSYCEDRGISAS-VQPAEEAS-R------CDVLVT  193 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHHHTTCCEE-ECCHHHHT-S------SSEEEE
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCH--HHHHHHHHHHHhcCceEE-ECCHHHHh-C------CCEEEE
Confidence            458999997 999999999998766788888998742  222222210 000 2344 78888876 4      899996


Q ss_pred             ccCchhHHHHH-HHHHHCCCcEEEe
Q 027650          113 FTDASTVYDNV-KQATAFGMRSVVY  136 (220)
Q Consensus       113 fT~p~~~~~~~-~~al~~G~~vVig  136 (220)
                      +|+...  +.+ ...++.|.+++.-
T Consensus       194 aTp~~~--pv~~~~~l~~G~~V~~i  216 (322)
T 1omo_A          194 TTPSRK--PVVKAEWVEEGTHINAI  216 (322)
T ss_dssp             CCCCSS--CCBCGGGCCTTCEEEEC
T ss_pred             eeCCCC--ceecHHHcCCCeEEEEC
Confidence            665322  222 2467889998854

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.46  E-value=0.014  Score=50.05  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=28.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      +++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r   34 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEA-GYLPVVIDN   34 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHT-TCCEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEec
Confidence            468999999999999999998874 788887643

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.43  E-value=0.005  Score=53.89  Aligned_cols=100  Identities=10%  Similarity=0.094  Sum_probs=61.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||.|.|++|.+|+.+++.+.+....+++.+ |+.   .+               .+++++++.      ++|+||.+..
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~-d~~---~d---------------~~~l~~~~~------~~d~Vih~a~   55 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEV-HRQ---TK---------------EEELESALL------KADFIVHLAG   55 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEC-CTT---CC---------------HHHHHHHHH------HCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEE-CCC---CC---------------HHHHHHHhc------cCCEEEECCc
Confidence            5899999999999999999988754477653 331   01               224556665      6999998652


Q ss_pred             c--------------hhHHHHHHHHHHCCCc--EE-EeCCC---C-----CHHHHH-HHHHHhhhcCceEE
Q 027650          116 A--------------STVYDNVKQATAFGMR--SV-VYVPH---I-----QLETVS-ALSAFCDKASMGCL  160 (220)
Q Consensus       116 p--------------~~~~~~~~~al~~G~~--vV-igTtG---~-----~~e~~~-~L~~aA~~~~v~vv  160 (220)
                      +              ......+..|.++|+.  +| +++.+   .     +.-..+ .+++++++.++++.
T Consensus        56 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~  126 (369)
T 3st7_A           56 VNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQDNPYGESKLQGEQLLREYAEEYGNTVY  126 (369)
T ss_dssp             SBCTTCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGSCSHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcCCCCchHHHHHHHHHHHHHHHHhCCCEE
Confidence            1              2234566777778854  54 33321   2     222222 34566666666654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.43  E-value=0.02  Score=48.40  Aligned_cols=95  Identities=21%  Similarity=0.265  Sum_probs=55.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccc-hhhh----hcCCCCCCcccc---
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GED-IGMV----CDMEQPLEIPVM---   91 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~----------------g~d-~g~l----~g~~~~~gv~v~---   91 (220)
                      .||+|+|+ |++|..+++.+... ++.=+.++|++..                |+. +..+    ..+.....+..+   
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~~-Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLASA-GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CeEEEEee-CHHHHHHHHHHHHc-CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            48999997 99999999998764 6644457786431                111 1001    000000111111   


Q ss_pred             ---CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650           92 ---SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                         .++++.+.      ++|+|||.+..... ......|.+.|+++|.+..
T Consensus       110 ~~~~~~~~~~~------~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~~  154 (249)
T 1jw9_B          110 LDDAELAALIA------EHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAA  154 (249)
T ss_dssp             CCHHHHHHHHH------TSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             CCHhHHHHHHh------CCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEeee
Confidence               12344554      78999988754333 4455777888999887643

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.43  E-value=0.019  Score=48.70  Aligned_cols=95  Identities=20%  Similarity=0.276  Sum_probs=55.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-----C-------cchhh-----h----hcCCCCCCcccc---
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-----G-------EDIGM-----V----CDMEQPLEIPVM---   91 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-----g-------~d~g~-----l----~g~~~~~gv~v~---   91 (220)
                      .||.|+|+ |.+|..+++.+... ++.=+.++|.+..     +       .|+|.     +    ..+.....+..+   
T Consensus        29 ~~VlvvG~-GglG~~va~~La~~-Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  106 (251)
T 1zud_1           29 SQVLIIGL-GGLGTPAALYLAGA-GVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR  106 (251)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHT-TCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CcEEEEcc-CHHHHHHHHHHHHc-CCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            58999998 99999999998764 7766678875321     0       01110     0    000000011111   


Q ss_pred             ---CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650           92 ---SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus        92 ---~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                         +++++.+.      ++|+|||++..... ......|.+.++++|.+..
T Consensus       107 ~~~~~~~~~~~------~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~  151 (251)
T 1zud_1          107 LTGEALKDAVA------RADVVLDCTDNMATRQEINAACVALNTPLITASA  151 (251)
T ss_dssp             CCHHHHHHHHH------HCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence               12344454      58888988754333 4455677788888887643

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.43  E-value=0.015  Score=50.52  Aligned_cols=106  Identities=15%  Similarity=0.142  Sum_probs=61.3

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cC-------CCCCCccccCCHHHHHhccc
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DM-------EQPLEIPVMSDLTMVLGSIS  102 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~--g~-------~~~~gv~v~~dl~~~l~~~~  102 (220)
                      .-.++||+|+|+ |.||..++..+.+. +.++....++    ..+..+.  |.       .....+..+++++++ .   
T Consensus        16 ~~~~~kI~IiGa-Ga~G~~~a~~L~~~-G~~V~l~~~~----~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-~---   85 (318)
T 3hwr_A           16 YFQGMKVAIMGA-GAVGCYYGGMLARA-GHEVILIARP----QHVQAIEATGLRLETQSFDEQVKVSASSDPSAV-Q---   85 (318)
T ss_dssp             ----CEEEEESC-SHHHHHHHHHHHHT-TCEEEEECCH----HHHHHHHHHCEEEECSSCEEEECCEEESCGGGG-T---
T ss_pred             hccCCcEEEECc-CHHHHHHHHHHHHC-CCeEEEEEcH----hHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHc-C---
Confidence            346789999997 99999999988764 6777765221    1111111  10       001233446677653 3   


Q ss_pred             cCCCccEEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHHh
Q 027650          103 QSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFC  152 (220)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~aA  152 (220)
                         ++|+||.++.+....+.+...   +..+..+|.-+.|+..++  .|.+..
T Consensus        86 ---~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~--~l~~~~  133 (318)
T 3hwr_A           86 ---GADLVLFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENAD--TLRSLL  133 (318)
T ss_dssp             ---TCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHH--HHHHHC
T ss_pred             ---CCCEEEEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHH--HHHHHc
Confidence               799999666666555544433   334666777777998752  455443

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.42  E-value=0.0054  Score=54.90  Aligned_cols=110  Identities=15%  Similarity=0.090  Sum_probs=62.7

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -..++|+|+|. |+||+.+++.+... ++++. ++|+..  .+.....    ..|+...+++++++.      .+|+|+.
T Consensus       162 l~gktvGIIG~-G~IG~~vA~~l~~~-G~~V~-~~dr~~--~~~~~~~----~~g~~~~~~l~ell~------~aDvV~l  226 (351)
T 3jtm_A          162 LEGKTIGTVGA-GRIGKLLLQRLKPF-GCNLL-YHDRLQ--MAPELEK----ETGAKFVEDLNEMLP------KCDVIVI  226 (351)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGG-CCEEE-EECSSC--CCHHHHH----HHCCEECSCHHHHGG------GCSEEEE
T ss_pred             ccCCEEeEEEe-CHHHHHHHHHHHHC-CCEEE-EeCCCc--cCHHHHH----hCCCeEcCCHHHHHh------cCCEEEE
Confidence            34469999996 99999999998765 88865 466532  1111111    234555679999986      7999985


Q ss_pred             ccCc--hh---HHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCce
Q 027650          113 FTDA--ST---VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (220)
Q Consensus       113 fT~p--~~---~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~  158 (220)
                      ..+.  +.   ..+.....++.|.-+|--..|---++ +.|.++-++.++.
T Consensus       227 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde-~aL~~aL~~g~i~  276 (351)
T 3jtm_A          227 NMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMER-QAVVDAVESGHIG  276 (351)
T ss_dssp             CSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCH-HHHHHHHHHTSEE
T ss_pred             CCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCH-HHHHHHHHhCCcc
Confidence            5431  11   11333344455544443222321111 3455555555554

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.42  E-value=0.0038  Score=52.88  Aligned_cols=33  Identities=27%  Similarity=0.392  Sum_probs=29.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |||.|.|++|-+|+.+++.+.+ .+.+++++..+
T Consensus         1 MkILVTGatGfIG~~L~~~L~~-~G~~V~~l~R~   33 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNA-RGHEVTLVSRK   33 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECC
Confidence            7999999999999999999887 48999987643

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.41  E-value=0.015  Score=49.96  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=28.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      ..++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~-g~~V~~~~r   52 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQ-GHEILVIDN   52 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGG-TCEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEEC
Confidence            3479999999999999999998875 788887654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.41  E-value=0.0029  Score=57.01  Aligned_cols=110  Identities=7%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -.+|+|.|+ |+||+.+++.+.+. +.+++ ++|++.  ..+.++..   .++.. +.+.++++.     .++|+++-+.
T Consensus       173 GktV~V~G~-G~VG~~~A~~L~~~-GakVv-v~D~~~--~~l~~~a~---~~ga~-~v~~~~ll~-----~~~DIvip~a  238 (364)
T 1leh_A          173 GLAVSVQGL-GNVAKALCKKLNTE-GAKLV-VTDVNK--AAVSAAVA---EEGAD-AVAPNAIYG-----VTCDIFAPCA  238 (364)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSCH--HHHHHHHH---HHCCE-ECCGGGTTT-----CCCSEEEECS
T ss_pred             cCEEEEECc-hHHHHHHHHHHHHC-CCEEE-EEcCCH--HHHHHHHH---HcCCE-EEChHHHhc-----cCCcEeeccc
Confidence            368999997 99999999998765 88988 888642  12222221   12322 225556665     3799998665


Q ss_pred             CchhHH-HHHHHHHHCCCcEEEeCCCC--CHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          115 DASTVY-DNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       115 ~p~~~~-~~~~~al~~G~~vVigTtG~--~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      ..+... +++.   ..|..+|++.+..  ++++   ..++.++.|+  ++.|.+.
T Consensus       239 ~~~~I~~~~~~---~lg~~iV~e~An~p~t~~e---a~~~L~~~Gi--~~~Pd~~  285 (364)
T 1leh_A          239 LGAVLNDFTIP---QLKAKVIAGSADNQLKDPR---HGKYLHELGI--VYAPDYV  285 (364)
T ss_dssp             CSCCBSTTHHH---HCCCSEECCSCSCCBSSHH---HHHHHHHHTC--EECCHHH
T ss_pred             hHHHhCHHHHH---hCCCcEEEeCCCCCcccHH---HHHHHHhCCC--EEeccee
Confidence            544332 3333   3388899887732  2222   3344445444  6666543

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=96.38  E-value=0.0056  Score=51.00  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=27.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      |.||.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r   34 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTL-AHEVRLSDI   34 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGT-EEEEEECCS
T ss_pred             CceEEEECCCCHHHHHHHHHHHhC-CCEEEEEeC
Confidence            468999999999999999988764 678776543

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=96.37  E-value=0.015  Score=50.44  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=26.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      ++|.|.|++|.+|+.+++.+.+....+++++..
T Consensus        47 ~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r   79 (357)
T 2x6t_A           47 RMIIVTGGAGFIGSNIVKALNDKGITDILVVDN   79 (357)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            689999999999999999998753277776543

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=96.36  E-value=0.018  Score=49.44  Aligned_cols=35  Identities=17%  Similarity=0.151  Sum_probs=27.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCC------cEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARG------MEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~------~eLvg~vd   68 (220)
                      .+++|.|.|++|.+|+.+++.+.+...      .+++++..
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r   53 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDV   53 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEES
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEc
Confidence            347999999999999999999887531      67776543

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.35  E-value=0.013  Score=54.29  Aligned_cols=34  Identities=26%  Similarity=0.394  Sum_probs=29.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ||||.|.|++|.+|+.+++.+.+. +.+++++..+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~-G~~V~~l~R~  180 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTG-GHEVIQLVRK  180 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECC
Confidence            789999999999999999998875 7898887654

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.33  E-value=0.0097  Score=53.17  Aligned_cols=64  Identities=17%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|. |+||+.+++.+... ++++.+ +|+..  .+... .    . ++...+++++++.      .+|+|+-..
T Consensus       173 gktvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~dr~~--~~~~~-~----~-g~~~~~~l~ell~------~sDvV~l~~  235 (345)
T 4g2n_A          173 GRRLGIFGM-GRIGRAIATRARGF-GLAIHY-HNRTR--LSHAL-E----E-GAIYHDTLDSLLG------ASDIFLIAA  235 (345)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHTT-TCEEEE-ECSSC--CCHHH-H----T-TCEECSSHHHHHH------TCSEEEECS
T ss_pred             CCEEEEEEe-ChhHHHHHHHHHHC-CCEEEE-ECCCC--cchhh-h----c-CCeEeCCHHHHHh------hCCEEEEec
Confidence            469999996 99999999998764 898775 67632  11111 1    1 4444579999997      799988554


Q ss_pred             C
Q 027650          115 D  115 (220)
Q Consensus       115 ~  115 (220)
                      +
T Consensus       236 P  236 (345)
T 4g2n_A          236 P  236 (345)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.32  E-value=0.0094  Score=48.66  Aligned_cols=142  Identities=16%  Similarity=0.134  Sum_probs=75.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |||+|+|+ |++|+.+++.+.+. +.+++. +|++.  ..+..+..   ..++.+ +   .+.+.+...  .-.++|+||
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~-g~~v~v-id~~~--~~~~~l~~---~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSR-KYGVVI-INKDR--ELCEEFAK---KLKATIIHGDGSHKEILRDA--EVSKNDVVV   70 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHT-TCCEEE-EESCH--HHHHHHHH---HSSSEEEESCTTSHHHHHHH--TCCTTCEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhC-CCeEEE-EECCH--HHHHHHHH---HcCCeEEEcCCCCHHHHHhc--CcccCCEEE
Confidence            58999997 99999999998764 777774 56431  11222211   112222 1   232222110  013799988


Q ss_pred             EccCchhHHHHH-HHHHH-CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHH-hc---CCCCC
Q 027650          112 DFTDASTVYDNV-KQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS-AS---FHYKN  185 (220)
Q Consensus       112 DfT~p~~~~~~~-~~al~-~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~-~~---~~~~d  185 (220)
                      -++..+.....+ ..+.+ .|..-++... .+++..+.|+    +.|+-.+++|....+-.+...+... +.   ....+
T Consensus        71 ~~~~~d~~n~~~~~~a~~~~~~~~iia~~-~~~~~~~~l~----~~G~d~vi~p~~~~~~~l~~~~~~~~~~~~~~~~~~  145 (218)
T 3l4b_C           71 ILTPRDEVNLFIAQLVMKDFGVKRVVSLV-NDPGNMEIFK----KMGITTVLNLTTLITNTVEALIFPDEFSSIIPLEQG  145 (218)
T ss_dssp             ECCSCHHHHHHHHHHHHHTSCCCEEEECC-CSGGGHHHHH----HHTCEECCCHHHHHHHHHHHHHCTTSCEECSCCSTT
T ss_pred             EecCCcHHHHHHHHHHHHHcCCCeEEEEE-eCcchHHHHH----HCCCCEEECHHHHHHHHHHHHhccCCceEEEEeCCC
Confidence            666555443333 33333 4655555432 3344445553    4577888888866665444333110 11   11234


Q ss_pred             eEEEecc
Q 027650          186 VEIVESR  192 (220)
Q Consensus       186 iEIiE~H  192 (220)
                      +++.|..
T Consensus       146 ~~~~e~~  152 (218)
T 3l4b_C          146 IEFLSVN  152 (218)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            7777764

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=96.32  E-value=0.017  Score=48.51  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=26.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      ||.|.|++|.+|+.+++.+.+....+++++..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r   32 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEcc
Confidence            68999999999999999998753277776543

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.31  E-value=0.021  Score=48.15  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      +|+||.|+|++|.+|+.+++.+.+. +.+++++..
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r   39 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVAS-GEEVTVLDD   39 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCCEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHC-CCEEEEEec
Confidence            4679999999999999999999875 788887654

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.30  E-value=0.011  Score=50.70  Aligned_cols=34  Identities=12%  Similarity=0.187  Sum_probs=29.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ++||.|.|++|.+|+.+++.+.+ .+.++++.+.+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~-~G~~V~~~~r~   42 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQ-KGYAVNTTVRD   42 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred             CCEEEEECCchHHHHHHHHHHHH-CCCEEEEEEcC
Confidence            57899999999999999999887 48898876653

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=96.30  E-value=0.011  Score=48.94  Aligned_cols=85  Identities=19%  Similarity=0.228  Sum_probs=51.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||.|.|++|.+|+.+++.+.+  +.+++++..+.. .. .+ +     ..++.-.++++++++.    .++|+||.++.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~--g~~V~~~~r~~~-~~-~~-~-----~~Dl~~~~~~~~~~~~----~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE--RHEVIKVYNSSE-IQ-GG-Y-----KLDLTDFPRLEDFIIK----KRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT--TSCEEEEESSSC-CT-TC-E-----ECCTTSHHHHHHHHHH----HCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc--CCeEEEecCCCc-CC-CC-c-----eeccCCHHHHHHHHHh----cCCCEEEECCc
Confidence            4899999999999999999874  688887654321 11 00 1     1111112345555542    14999998753


Q ss_pred             ch------------------hHHHHHHHHHHCCCcEE
Q 027650          116 AS------------------TVYDNVKQATAFGMRSV  134 (220)
Q Consensus       116 p~------------------~~~~~~~~al~~G~~vV  134 (220)
                      ..                  .....++.+.+.|.++|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv  103 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIV  103 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEE
Confidence            21                  12345567777777766

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.30  E-value=0.0058  Score=55.61  Aligned_cols=68  Identities=16%  Similarity=0.088  Sum_probs=46.1

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -...+|+|+|. |+||+.+++.+... ++++.+ +|+.....+...      ..|+..+.++++++.      .+|+|+.
T Consensus       189 l~gktvGIIGl-G~IG~~vA~~l~a~-G~~V~~-~d~~~~~~~~~~------~~G~~~~~~l~ell~------~aDvV~l  253 (393)
T 2nac_A          189 LEAMHVGTVAA-GRIGLAVLRRLAPF-DVHLHY-TDRHRLPESVEK------ELNLTWHATREDMYP------VCDVVTL  253 (393)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGG-TCEEEE-ECSSCCCHHHHH------HHTCEECSSHHHHGG------GCSEEEE
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHhC-CCEEEE-EcCCccchhhHh------hcCceecCCHHHHHh------cCCEEEE
Confidence            34468999996 99999999988764 788764 565321111111      234444578999886      7999996


Q ss_pred             ccC
Q 027650          113 FTD  115 (220)
Q Consensus       113 fT~  115 (220)
                      ..+
T Consensus       254 ~~P  256 (393)
T 2nac_A          254 NCP  256 (393)
T ss_dssp             CSC
T ss_pred             ecC
Confidence            654

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.29  E-value=0.0092  Score=53.36  Aligned_cols=98  Identities=12%  Similarity=0.129  Sum_probs=59.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCccccC-
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVMS-   92 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----l~g~~~~~gv~v~~-   92 (220)
                      ..||.|+|+ |..|..+++.+.. .|+.=+.++|.+.                .|+.-.+     +..+.....+..+. 
T Consensus        34 ~~~VlIvGa-GGlGs~va~~La~-aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~  111 (340)
T 3rui_A           34 NTKVLLLGA-GTLGCYVSRALIA-WGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL  111 (340)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-cCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEec
Confidence            358999998 9999999999876 4776677888531                1111000     11110001111111 


Q ss_pred             --------------------CHHHHHhccccCCCccEEEEccC-chhHHHHHHHHHHCCCcEEEeCCCC
Q 027650           93 --------------------DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHI  140 (220)
Q Consensus        93 --------------------dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~~vVigTtG~  140 (220)
                                          ++.+++.      ++|+|||++. ++.-...-..|.++|+|+|.+..|+
T Consensus       112 ~i~~~g~~~~~~~~~~~~~~~l~~~l~------~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa~G~  174 (340)
T 3rui_A          112 SIPMIGHKLVNEEAQHKDFDRLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGF  174 (340)
T ss_dssp             CCCCTTSCCSCHHHHHHHHHHHHHHHH------HCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEEECS
T ss_pred             cccccCcccchhhhhcCCHHHHHhhhc------cCCEEEecCCCHHHHHHHHHHHHHcCCcEEEeeecc
Confidence                                2344554      6899999885 4444556688999999998765444

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.26  E-value=0.043  Score=43.56  Aligned_cols=120  Identities=13%  Similarity=0.072  Sum_probs=66.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ++||.|.|++|.+|+.+++.+.+.... +++++..+.. . .         ..++. +..|+.+.-. +.+.- +|+||.
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~-~-~---------~~~~~~~~~D~~~~~~-~~~~~-~d~vi~   71 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKAL-A-E---------HPRLDNPVGPLAELLP-QLDGS-IDTAFC   71 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCC-C-C---------CTTEECCBSCHHHHGG-GCCSC-CSEEEE
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCc-c-c---------CCCceEEeccccCHHH-HHHhh-hcEEEE
Confidence            469999999999999999999886442 7776543321 1 0         01111 2234443211 00012 899998


Q ss_pred             ccCch----------------hHHHHHHHHHHCCCc-EE-EeCCC-C----C--HHHHHHHHHHhhhcCce-EE-EcCCC
Q 027650          113 FTDAS----------------TVYDNVKQATAFGMR-SV-VYVPH-I----Q--LETVSALSAFCDKASMG-CL-IAPTL  165 (220)
Q Consensus       113 fT~p~----------------~~~~~~~~al~~G~~-vV-igTtG-~----~--~e~~~~L~~aA~~~~v~-vv-iapNf  165 (220)
                      +..+.                .....++.+.+.|.. +| +++.+ +    +  ......++.+.++.+++ +. +.|.+
T Consensus        72 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~y~~sK~~~e~~~~~~~~~~~~~vrp~~  151 (215)
T 2a35_A           72 CLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTIARPSL  151 (215)
T ss_dssp             CCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTTCSSHHHHHHHHHHHHHTTSCCSEEEEEECCS
T ss_pred             CeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCCCccHHHHHHHHHHHHHHHcCCCeEEEEeCce
Confidence            76321                223455677777765 44 33332 1    1  13344566777777776 43 45654


Q ss_pred             cH
Q 027650          166 SI  167 (220)
Q Consensus       166 S~  167 (220)
                      -.
T Consensus       152 v~  153 (215)
T 2a35_A          152 LF  153 (215)
T ss_dssp             EE
T ss_pred             ee
Confidence            33

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.26  E-value=0.011  Score=51.62  Aligned_cols=62  Identities=19%  Similarity=0.174  Sum_probs=43.3

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -..++|+|+|. |+||+.+++.+... ++++.+ +|+... ..           +...+.++++++.      .+|+|+-
T Consensus       122 l~g~~vgIIG~-G~IG~~~A~~l~~~-G~~V~~-~dr~~~-~~-----------~~~~~~~l~ell~------~aDvV~l  180 (303)
T 1qp8_A          122 IQGEKVAVLGL-GEIGTRVGKILAAL-GAQVRG-FSRTPK-EG-----------PWRFTNSLEEALR------EARAAVC  180 (303)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHT-TCEEEE-ECSSCC-CS-----------SSCCBSCSHHHHT------TCSEEEE
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHC-CCEEEE-ECCCcc-cc-----------CcccCCCHHHHHh------hCCEEEE
Confidence            44569999996 99999999998764 788764 665321 11           1123567888885      7898885


Q ss_pred             ccC
Q 027650          113 FTD  115 (220)
Q Consensus       113 fT~  115 (220)
                      ..+
T Consensus       181 ~~P  183 (303)
T 1qp8_A          181 ALP  183 (303)
T ss_dssp             CCC
T ss_pred             eCc
Confidence            543

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.25  E-value=0.0092  Score=54.89  Aligned_cols=135  Identities=19%  Similarity=0.239  Sum_probs=82.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC-c---c-ccCCHHHHHhccccC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-I---P-VMSDLTMVLGSISQS  104 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~g-v---~-v~~dl~~~l~~~~~~  104 (220)
                      ..||+|.|. |++|+..++.+.+. +.++|++.|+     +..|-|..++.......+ +   + -+-+.++++.     
T Consensus       221 g~~vaVqG~-GnVG~~aa~~l~e~-GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~-----  293 (424)
T 3k92_A          221 NARIIIQGF-GNAGSFLAKFMHDA-GAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLE-----  293 (424)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHH-----
T ss_pred             cCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCcccee-----
Confidence            468999996 99999999988764 8999999995     345777766554322222 1   1 1224577776     


Q ss_pred             CCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCCcH---HHHH-HHHHHH
Q 027650          105 KARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GSIL-LQQAAI  177 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNfS~---Gv~l-l~~~a~  177 (220)
                      .++||+|-++..... .+++..   -+..+|+|-- + ++++-.+.|    +++  .+++.|.|..   ||.+ -.+..+
T Consensus       294 ~~~DIliPcA~~n~I~~~~a~~---l~ak~V~EgAN~p~t~eA~~iL----~~r--GI~~~PD~~aNAGGV~vS~~E~~q  364 (424)
T 3k92_A          294 KDCDILVPAAISNQITAKNAHN---IQASIVVERANGPTTIDATKIL----NER--GVLLVPDILASAGGVTVSYFEWVQ  364 (424)
T ss_dssp             SCCSEEEECSCSSCBCTTTGGG---CCCSEEECCSSSCBCHHHHHHH----HHT--TCEEECHHHHTTHHHHHHHHHHHH
T ss_pred             ccccEEeecCcccccChhhHhh---cCceEEEcCCCCCCCHHHHHHH----HHC--CCEEECchHhcCCCEEeehhHHHh
Confidence            489999988765443 344443   3888998865 3 455433333    344  4566676543   4422 123344


Q ss_pred             HhcCCCCC
Q 027650          178 SASFHYKN  185 (220)
Q Consensus       178 ~~~~~~~d  185 (220)
                      .+.+++|+
T Consensus       365 n~~~~~w~  372 (424)
T 3k92_A          365 NNQGYYWS  372 (424)
T ss_dssp             HHHTCCCC
T ss_pred             cccccCCC
Confidence            44445554

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.24  E-value=0.018  Score=50.28  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ++|.|.|++|.+|+.+++.+.+. +.+++++..+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~   57 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEK-GYEVHGIVRR   57 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cEEEEECCCchHHHHHHHHHHHC-CCEEEEEECC
Confidence            68999999999999999999874 7888876543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.23  E-value=0.01  Score=51.86  Aligned_cols=67  Identities=22%  Similarity=0.307  Sum_probs=41.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhc-C-CC-CCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCD-M-EQ-PLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g-~-~~-~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .||+|+|+ |.||..++..+.  .+++++ ++|++.  ..+..... + .. ..++...+|+++ +.      ++|+||.
T Consensus        13 ~~V~vIG~-G~MG~~iA~~la--aG~~V~-v~d~~~--~~~~~~~~~l~~~~~~~i~~~~~~~~-~~------~aDlVie   79 (293)
T 1zej_A           13 MKVFVIGA-GLMGRGIAIAIA--SKHEVV-LQDVSE--KALEAAREQIPEELLSKIEFTTTLEK-VK------DCDIVME   79 (293)
T ss_dssp             CEEEEECC-SHHHHHHHHHHH--TTSEEE-EECSCH--HHHHHHHHHSCGGGGGGEEEESSCTT-GG------GCSEEEE
T ss_pred             CeEEEEee-CHHHHHHHHHHH--cCCEEE-EEECCH--HHHHHHHHHHHHHHhCCeEEeCCHHH-Hc------CCCEEEE
Confidence            58999997 999999999988  588866 567532  11111110 0 00 014555677765 43      6899886


Q ss_pred             ccC
Q 027650          113 FTD  115 (220)
Q Consensus       113 fT~  115 (220)
                      +.+
T Consensus        80 avp   82 (293)
T 1zej_A           80 AVF   82 (293)
T ss_dssp             CCC
T ss_pred             cCc
Confidence            544

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.23  E-value=0.0078  Score=52.12  Aligned_cols=108  Identities=10%  Similarity=-0.009  Sum_probs=56.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .||.|+|+ |+||+.++..+... +.+-+-+++++.  ..+.++..   ......++++++++.      ++|+||..|+
T Consensus       118 k~vlvlGa-Gg~g~aia~~L~~~-G~~~v~v~~R~~--~~a~~la~---~~~~~~~~~~~~~~~------~aDiVInaTp  184 (277)
T 3don_A          118 AYILILGA-GGASKGIANELYKI-VRPTLTVANRTM--SRFNNWSL---NINKINLSHAESHLD------EFDIIINTTP  184 (277)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHTT-CCSCCEEECSCG--GGGTTCCS---CCEEECHHHHHHTGG------GCSEEEECCC
T ss_pred             CEEEEECC-cHHHHHHHHHHHHC-CCCEEEEEeCCH--HHHHHHHH---hcccccHhhHHHHhc------CCCEEEECcc
Confidence            58999997 99999999988764 663334566542  22333321   122222455666554      6899996554


Q ss_pred             chhHHHHH-----HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          116 ASTVYDNV-----KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       116 p~~~~~~~-----~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                       ....+..     ...++.+ .+|+-. -+++.+ ..|.+.|++.|..++
T Consensus       185 -~Gm~~~~~~~l~~~~l~~~-~~V~D~-vY~P~~-T~ll~~A~~~G~~~~  230 (277)
T 3don_A          185 -AGMNGNTDSVISLNRLASH-TLVSDI-VYNPYK-TPILIEAEQRGNPIY  230 (277)
T ss_dssp             --------CCSSCCTTCCSS-CEEEES-CCSSSS-CHHHHHHHHTTCCEE
T ss_pred             -CCCCCCCcCCCCHHHcCCC-CEEEEe-cCCCCC-CHHHHHHHHCcCEEe
Confidence             3222211     1112223 333322 122322 246677788777654

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=96.22  E-value=0.012  Score=51.89  Aligned_cols=74  Identities=16%  Similarity=0.103  Sum_probs=43.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCccc---cCCHHHHHhccccCCCccE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DV  109 (220)
                      .++||+|+||+|.+|..++..+....- .+|+. +|.+.....+.++........+..   ++|+++++.      ++|+
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l-~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~------gaDv   79 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHL-YDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALT------GMDL   79 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEE-EESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHT------TCSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEE-EeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcC------CCCE
Confidence            458999999789999999988876432 46654 775321001112221100111222   346777775      8999


Q ss_pred             EEEcc
Q 027650          110 VIDFT  114 (220)
Q Consensus       110 VIDfT  114 (220)
                      ||...
T Consensus        80 Vi~~a   84 (326)
T 1smk_A           80 IIVPA   84 (326)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            98654

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=96.22  E-value=0.027  Score=48.19  Aligned_cols=33  Identities=18%  Similarity=0.193  Sum_probs=27.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc--CC---cEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA--RG---MEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~---~eLvg~vd   68 (220)
                      |||.|.|++|.+|+.+++.+.+.  ++   .+++++..
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r   38 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDS   38 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEEC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEEC
Confidence            58999999999999999998874  36   88887654

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.22  E-value=0.013  Score=49.14  Aligned_cols=32  Identities=16%  Similarity=0.177  Sum_probs=26.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |.+|.|.|++|.+|+.+++.+.+. +.+++...
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~-G~~V~~~~   34 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPM-AEILRLAD   34 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGG-EEEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhc-CCEEEEEe
Confidence            457999999999999999998764 77777544

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.18  E-value=0.048  Score=50.35  Aligned_cols=125  Identities=12%  Similarity=0.051  Sum_probs=70.7

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------CCc------chhhhhcC-CCCCCccccCCHHHHH
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------VGE------DIGMVCDM-EQPLEIPVMSDLTMVL   98 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------~g~------d~g~l~g~-~~~~gv~v~~dl~~~l   98 (220)
                      +.|-+|+|+|. |+||--++..+.+ .+++++| +|.+.       .|+      .+.+++.. -....+..++|+++++
T Consensus        19 ~~m~~IaViGl-GYVGLp~A~~~A~-~G~~V~g-~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai   95 (444)
T 3vtf_A           19 SHMASLSVLGL-GYVGVVHAVGFAL-LGHRVVG-YDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAV   95 (444)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHH-HTCEEEE-ECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHH
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHh-CCCcEEE-EECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHH
Confidence            35679999996 9999988877765 4889887 56321       111      11111100 0011245577888887


Q ss_pred             hccccCCCccEEEEc--cC------ch-----hHHHHHHHHHH---CCCcEEEeCC---CCCHHHHHHHH-HHhhhcCce
Q 027650           99 GSISQSKARAVVIDF--TD------AS-----TVYDNVKQATA---FGMRSVVYVP---HIQLETVSALS-AFCDKASMG  158 (220)
Q Consensus        99 ~~~~~~~~~DVVIDf--T~------p~-----~~~~~~~~al~---~G~~vVigTt---G~~~e~~~~L~-~aA~~~~v~  158 (220)
                      .      .+|++|.+  |+      |+     .+.+.+...++   .|.-||+.+|   |.+++....+. +........
T Consensus        96 ~------~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~  169 (444)
T 3vtf_A           96 A------ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFS  169 (444)
T ss_dssp             H------TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCE
T ss_pred             h------cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCce
Confidence            6      68987755  22      11     22233333444   3556777766   78876554443 222223466


Q ss_pred             EEEcCCCc
Q 027650          159 CLIAPTLS  166 (220)
Q Consensus       159 vviapNfS  166 (220)
                      +.++|-|-
T Consensus       170 v~~~PErl  177 (444)
T 3vtf_A          170 VASNPEFL  177 (444)
T ss_dssp             EEECCCCC
T ss_pred             eecCcccc
Confidence            77888764

>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}

Probab=96.18  E-value=0.0051  Score=55.36  Aligned_cols=103  Identities=19%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             CCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcch------hhhhcCCCCCCcccc
Q 027650           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDI------GMVCDMEQPLEIPVM   91 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~------g~l~g~~~~~gv~v~   91 (220)
                      ++.+++||+|+|+ ||+|+.+.|++.+. ++++|++-|...             .|+--      +.-+-.. ...+.++
T Consensus        17 ~~~~~~kVaInGf-GrIGr~vlr~l~e~-~~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~~~~~l~i~-Gk~I~v~   93 (356)
T 3hja_A           17 QGPGSMKLAINGF-GRIGRNVFKIAFER-GIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVD-GREIKII   93 (356)
T ss_dssp             -----CEEEEECC-SHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEET-TEEEEEE
T ss_pred             cCCCCeEEEEECC-CHHHHHHHHHHHHC-CCCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEEcCCEEEEC-CEEEEEE
Confidence            3455689999998 99999999999887 899999876410             01100      0000000 1123444


Q ss_pred             C--CHHHHHhccccCCCccEEEEccCchhH----HHHHHHHHH-CCCc-EEEeCCC
Q 027650           92 S--DLTMVLGSISQSKARAVVIDFTDASTV----YDNVKQATA-FGMR-SVVYVPH  139 (220)
Q Consensus        92 ~--dl~~~l~~~~~~~~~DVVIDfT~p~~~----~~~~~~al~-~G~~-vVigTtG  139 (220)
                      .  |++++-..   +.++|+|+++|-....    .+.+...++ .|.. |||-.|+
T Consensus        94 ~~~dp~~i~w~---~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps  146 (356)
T 3hja_A           94 AERDPKNLPWA---KLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPA  146 (356)
T ss_dssp             CCSSGGGCCHH---HHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCC
T ss_pred             EcCChhhCCcc---ccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCC
Confidence            3  44433110   0279999987644444    666777788 8864 6666553

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=96.16  E-value=0.021  Score=48.68  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=27.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd   68 (220)
                      |||.|.|++|.+|+.+++.+.+.. +.+++++..
T Consensus         4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r   37 (336)
T 2hun_A            4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDK   37 (336)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            689999999999999999988753 588887643

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=96.13  E-value=0.017  Score=49.85  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      |||.|.|++|.+|+.+++.+.+..+.+++++..
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r   33 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEec
Confidence            589999999999999999998866788887653

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=96.12  E-value=0.0061  Score=54.53  Aligned_cols=92  Identities=21%  Similarity=0.259  Sum_probs=44.9

Q ss_pred             ecccccccccCCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEecCC-----CCc--chh
Q 027650           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSHS-----VGE--DIG   77 (220)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~------eLvg~vd~~~-----~g~--d~g   77 (220)
                      |.||---+++++.+    .+...+.+||+|+||+|++|+.++-.+...+=+      +| ..+|...     .|.  |+.
T Consensus         4 ~~~~~~~~~~~~~~----~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL-~L~Di~~~~~~~~Gva~DL~   78 (345)
T 4h7p_A            4 HHHHHMGTLEAQTQ----GPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVEL-RLLDIEPALKALAGVEAELE   78 (345)
T ss_dssp             ----------------------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEE-EEECCGGGHHHHHHHHHHHH
T ss_pred             cccccccccccccc----CCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEE-EEECCCCccccchhhhhhhh
Confidence            34444456666532    223344589999999999999998777654422      44 4677421     111  121


Q ss_pred             hhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           78 MVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        78 ~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ... ......+.+.++..+.+.      ++|+||...
T Consensus        79 ~~~-~~~~~~~~~~~~~~~a~~------~advVvi~a  108 (345)
T 4h7p_A           79 DCA-FPLLDKVVVTADPRVAFD------GVAIAIMCG  108 (345)
T ss_dssp             HTT-CTTEEEEEEESCHHHHTT------TCSEEEECC
T ss_pred             hcC-ccCCCcEEEcCChHHHhC------CCCEEEECC
Confidence            111 000123445778888875      899988543

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.11  E-value=0.019  Score=49.64  Aligned_cols=103  Identities=14%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-----CCC---CccccCCHHHHHhccccCCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-----QPL---EIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~-----~~~---gv~v~~dl~~~l~~~~~~~~  106 (220)
                      ++||+|+|+ |.||..++..+.+. +.++. ++++... +.+.+ .|..     ...   .+.++++.+++ .      .
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~-g~~V~-~~~r~~~-~~i~~-~g~~~~~~~g~~~~~~~~~~~~~~~~-~------~   69 (312)
T 3hn2_A            2 SLRIAIVGA-GALGLYYGALLQRS-GEDVH-FLLRRDY-EAIAG-NGLKVFSINGDFTLPHVKGYRAPEEI-G------P   69 (312)
T ss_dssp             --CEEEECC-STTHHHHHHHHHHT-SCCEE-EECSTTH-HHHHH-TCEEEEETTCCEEESCCCEESCHHHH-C------C
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHC-CCeEE-EEEcCcH-HHHHh-CCCEEEcCCCeEEEeeceeecCHHHc-C------C
Confidence            479999997 99999999988764 56655 4454321 11111 0110     000   23445677663 2      7


Q ss_pred             ccEEEEccCchhHHHHHHHH---HHCCCcEEEeCCCCCHHHHHHHHHH
Q 027650          107 RAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAF  151 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~~~e~~~~L~~a  151 (220)
                      +|+||-++.+....+.+...   +..+..+|+-.-|+..+  +.|.+.
T Consensus        70 ~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~--~~l~~~  115 (312)
T 3hn2_A           70 MDLVLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNE--EALATL  115 (312)
T ss_dssp             CSEEEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHH--HHHHHH
T ss_pred             CCEEEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcH--HHHHHH
Confidence            99999777666655444433   34566677666699753  234444

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=96.10  E-value=0.033  Score=48.74  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=27.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVT-KARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd   68 (220)
                      |+|.|.|++|.+|+.+++.+. + .+.+++++..
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~-~g~~V~~~~r   35 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRD-TNHSVVIVDS   35 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-CCCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHh-CCCEEEEEec
Confidence            599999999999999999998 5 5788887543

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.10  E-value=0.019  Score=50.40  Aligned_cols=119  Identities=10%  Similarity=0.142  Sum_probs=66.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-----cCC---HHHHHhccccCCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-----MSD---LTMVLGSISQSKA  106 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-----~~d---l~~~l~~~~~~~~  106 (220)
                      +++|.|.|++|.+|+.+++.+.+ .+.+++++..+.. ......+..   ..++.+     .+|   +.+++.      +
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~R~~~-~~~~~~l~~---~~~v~~v~~D~l~d~~~l~~~~~------~   73 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAA-VGHHVRAQVHSLK-GLIAEELQA---IPNVTLFQGPLLNNVPLMDTLFE------G   73 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHH-TTCCEEEEESCSC-SHHHHHHHT---STTEEEEESCCTTCHHHHHHHHT------T
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-CCCEEEEEECCCC-hhhHHHHhh---cCCcEEEECCccCCHHHHHHHHh------c
Confidence            46899999999999999999887 4788887654321 111112211   011211     113   445554      7


Q ss_pred             ccEEEEccCch------hHHHHHHHHHHCC-C-cEE-EeCCC--C------C--HHHHHHHHHHhhhcCceEE-EcCC
Q 027650          107 RAVVIDFTDAS------TVYDNVKQATAFG-M-RSV-VYVPH--I------Q--LETVSALSAFCDKASMGCL-IAPT  164 (220)
Q Consensus       107 ~DVVIDfT~p~------~~~~~~~~al~~G-~-~vV-igTtG--~------~--~e~~~~L~~aA~~~~v~vv-iapN  164 (220)
                      +|+||..+...      .....+..|.+.| + ++| +++.+  .      +  -......+++.++.++++. +.|+
T Consensus        74 ~d~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~~~~~y~~sK~~~E~~~~~~gi~~~ivrpg  151 (352)
T 1xgk_A           74 AHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAG  151 (352)
T ss_dssp             CSEEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTSSSCEEEEEEC
T ss_pred             CCEEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCccccccCCCCCccHHHHHHHHHHHHHHcCCCEEEEecc
Confidence            89998655321      1234456677777 5 454 33322  0      0  1233456666666666654 3354

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=96.09  E-value=0.028  Score=53.51  Aligned_cols=35  Identities=23%  Similarity=0.177  Sum_probs=30.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .+++|.|.|++|.+|+.+++.+.+.++.+++++..
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r  348 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDI  348 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEES
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEc
Confidence            56799999999999999999998876889887654

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.09  E-value=0.012  Score=51.72  Aligned_cols=66  Identities=15%  Similarity=0.119  Sum_probs=45.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-CCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ...+|+|+|. |+||+.+++.+.. -++++++ +|+ ... ..  ...    ..|+...+++++++.      .+|+|+.
T Consensus       145 ~g~~vgIIG~-G~IG~~~A~~l~~-~G~~V~~-~d~~~~~-~~--~~~----~~g~~~~~~l~ell~------~aDvVil  208 (320)
T 1gdh_A          145 DNKTLGIYGF-GSIGQALAKRAQG-FDMDIDY-FDTHRAS-SS--DEA----SYQATFHDSLDSLLS------VSQFFSL  208 (320)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHT-TTCEEEE-ECSSCCC-HH--HHH----HHTCEECSSHHHHHH------HCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHH-CCCEEEE-ECCCCcC-hh--hhh----hcCcEEcCCHHHHHh------hCCEEEE
Confidence            3468999996 9999999999875 4788764 665 431 11  111    234444558999886      6999996


Q ss_pred             ccC
Q 027650          113 FTD  115 (220)
Q Consensus       113 fT~  115 (220)
                      ..+
T Consensus       209 ~~p  211 (320)
T 1gdh_A          209 NAP  211 (320)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.08  E-value=0.02  Score=50.44  Aligned_cols=90  Identities=12%  Similarity=0.038  Sum_probs=55.3

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -..++|+|+|+ |+||+.+++.+.. -++++. ++|+... .+.  ..    ..|+. +.++++++.      ++|+|+.
T Consensus       148 l~g~~vgIIG~-G~iG~~iA~~l~~-~G~~V~-~~d~~~~-~~~--~~----~~g~~-~~~l~~~l~------~aDvVil  210 (334)
T 2dbq_A          148 VYGKTIGIIGL-GRIGQAIAKRAKG-FNMRIL-YYSRTRK-EEV--ER----ELNAE-FKPLEDLLR------ESDFVVL  210 (334)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSSCC-HHH--HH----HHCCE-ECCHHHHHH------HCSEEEE
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHh-CCCEEE-EECCCcc-hhh--Hh----hcCcc-cCCHHHHHh------hCCEEEE
Confidence            34469999996 9999999999876 478876 4665421 111  11    12333 358988886      6999997


Q ss_pred             ccCchh-H---H-HHHHHHHHCCCcEEEeCCC
Q 027650          113 FTDAST-V---Y-DNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       113 fT~p~~-~---~-~~~~~al~~G~~vVigTtG  139 (220)
                      ..++.. +   . +.....++.|.-+|.-.+|
T Consensus       211 ~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg  242 (334)
T 2dbq_A          211 AVPLTRETYHLINEERLKLMKKTAILINIARG  242 (334)
T ss_dssp             CCCCCTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred             CCCCChHHHHhhCHHHHhcCCCCcEEEECCCC
Confidence            665433 1   1 2333445566555543344

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=96.08  E-value=0.02  Score=49.37  Aligned_cols=34  Identities=21%  Similarity=0.189  Sum_probs=27.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCC----cEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARG----MEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~----~eLvg~vd~   69 (220)
                      +||.|.|++|.+|+.+++.+.+...    .+++++..+
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~   39 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARR   39 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESS
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCC
Confidence            6899999999999999999877432    888876543

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.08  E-value=0.029  Score=49.27  Aligned_cols=72  Identities=15%  Similarity=0.091  Sum_probs=43.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchhhhhc-CCCCCCccccCCHHHHHhccccCCCc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKAR  107 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---g--~d~g~l~g-~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (220)
                      .++||+|+|+ |.||..++..+....-++ +.++|.+..   |  .++..... ......+..++|+ +.+.      ++
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~------~a   73 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLA------GA   73 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGT------TC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhC------CC
Confidence            3579999998 999999988887653337 777886421   1  11111100 0012234445788 5554      89


Q ss_pred             cEEEEcc
Q 027650          108 AVVIDFT  114 (220)
Q Consensus       108 DVVIDfT  114 (220)
                      |+||...
T Consensus        74 D~Vi~a~   80 (322)
T 1t2d_A           74 DVVIVTA   80 (322)
T ss_dssp             SEEEECC
T ss_pred             CEEEEeC
Confidence            9999543

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.08  E-value=0.012  Score=54.33  Aligned_cols=136  Identities=15%  Similarity=0.100  Sum_probs=80.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC-c-----cccCCHHHHHhcccc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-I-----PVMSDLTMVLGSISQ  103 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~g-v-----~v~~dl~~~l~~~~~  103 (220)
                      ..||+|.|. |++|+..++.+.+. +..+|++.|+     +..|-|..++.......+ +     ..+.+.++++.    
T Consensus       235 g~~vaVqGf-GnVG~~~a~~L~e~-GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~----  308 (440)
T 3aog_A          235 GARVAIQGF-GNVGNAAARAFHDH-GARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWG----  308 (440)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTT----
T ss_pred             CCEEEEecc-CHHHHHHHHHHHHC-CCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhc----
Confidence            469999995 99999999988774 9999999996     344656554432210111 0     01224567765    


Q ss_pred             CCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCc---HHHHH-HHHHH
Q 027650          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS---IGSIL-LQQAA  176 (220)
Q Consensus       104 ~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS---~Gv~l-l~~~a  176 (220)
                       .++||+|.++.++.. .+++.   +-+..+|++--  .++++-.+.|.    ++|+  ++.|.+.   =||.+ -.+..
T Consensus       309 -~~~DIlvPcA~~n~i~~~na~---~l~ak~VvEgAN~p~t~eA~~iL~----~~GI--~~~PD~~aNaGGV~vS~~E~~  378 (440)
T 3aog_A          309 -LPVEFLVPAALEKQITEQNAW---RIRARIVAEGANGPTTPAADDILL----EKGV--LVVPDVIANAGGVTVSYFEWV  378 (440)
T ss_dssp             -CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHHHH----HHTC--EEECHHHHTTHHHHHHHHHHH
T ss_pred             -CCCcEEEecCCcCccchhhHH---HcCCcEEEecCccccCHHHHHHHH----HCCC--EEEChHHHhCCCceEEEEEEE
Confidence             489999998876544 34443   33888888765  35655433332    4444  4445443   35533 12344


Q ss_pred             HHhcCCCCCe
Q 027650          177 ISASFHYKNV  186 (220)
Q Consensus       177 ~~~~~~~~di  186 (220)
                      +.+...+|+-
T Consensus       379 qN~~~~~w~~  388 (440)
T 3aog_A          379 QDFNSYFWTE  388 (440)
T ss_dssp             HHTTTCCCCH
T ss_pred             ecCccCcCCH
Confidence            4454455553

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.08  E-value=0.027  Score=51.84  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=26.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+.||+|+|+ |.||..++..+.. .+++++ ++|+
T Consensus        36 ~~~kV~VIGa-G~MG~~iA~~la~-~G~~V~-l~D~   68 (463)
T 1zcj_A           36 PVSSVGVLGL-GTMGRGIAISFAR-VGISVV-AVES   68 (463)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHT-TTCEEE-EECS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHh-CCCeEE-EEEC
Confidence            4568999997 9999999998876 478876 4565

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.06  E-value=0.0089  Score=47.54  Aligned_cols=65  Identities=15%  Similarity=0.242  Sum_probs=41.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .||||.|.|++|.+|+.+++.+.  .+.+++.+..+..       ..    ..++.-.++++++++..   .++|+||..
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~--~g~~V~~~~r~~~-------~~----~~D~~~~~~~~~~~~~~---~~~d~vi~~   65 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE--KKAEVITAGRHSG-------DV----TVDITNIDSIKKMYEQV---GKVDAIVSA   65 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT--TTSEEEEEESSSS-------SE----ECCTTCHHHHHHHHHHH---CCEEEEEEC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH--CCCeEEEEecCcc-------ce----eeecCCHHHHHHHHHHh---CCCCEEEEC
Confidence            45799999999999999999987  5899876543211       00    11222233455555421   258999976


Q ss_pred             c
Q 027650          114 T  114 (220)
Q Consensus       114 T  114 (220)
                      .
T Consensus        66 a   66 (202)
T 3d7l_A           66 T   66 (202)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=96.04  E-value=0.018  Score=48.74  Aligned_cols=70  Identities=10%  Similarity=0.158  Sum_probs=41.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      ||.|.|++|.+|+.+++.+.+. .+.+++++..+....... .+.    ..++.-.+++++++..    .++|+||.+..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~-~~~----~~D~~d~~~~~~~~~~----~~~d~vih~a~   71 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGI-KFI----TLDVSNRDEIDRAVEK----YSIDAIFHLAG   71 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCTTC-CEE----ECCTTCHHHHHHHHHH----TTCCEEEECCC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccCc-eEE----EecCCCHHHHHHHHhh----cCCcEEEECCc
Confidence            6899999999999999998876 467887654332110000 000    0111112234555542    37999998764

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.04  E-value=0.0042  Score=53.43  Aligned_cols=79  Identities=11%  Similarity=0.052  Sum_probs=43.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|||+|+|+ |.||..++..+.+. +.++. ++++...+-+.....|   .....+..+..+.+.     ..+|+||-++
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~-g~~V~-~~~r~~~~~~~~~~~g---~~~~~~~~~~~~~~~-----~~~D~vilav   70 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQS-LPHTT-LIGRHAKTITYYTVPH---APAQDIVVKGYEDVT-----NTFDVIIIAV   70 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHH-CTTCE-EEESSCEEEEEESSTT---SCCEEEEEEEGGGCC-----SCEEEEEECS
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHC-CCeEE-EEEeccCcEEEEecCC---eeccceecCchHhcC-----CCCCEEEEeC
Confidence            579999997 99999999888754 34544 3444321111110001   111223333334332     2789999777


Q ss_pred             CchhHHHHHH
Q 027650          115 DASTVYDNVK  124 (220)
Q Consensus       115 ~p~~~~~~~~  124 (220)
                      .+....+.+.
T Consensus        71 k~~~~~~~l~   80 (294)
T 3g17_A           71 KTHQLDAVIP   80 (294)
T ss_dssp             CGGGHHHHGG
T ss_pred             CccCHHHHHH
Confidence            7766555443

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.04  E-value=0.022  Score=48.09  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=27.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      |||.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r   32 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVEL-GYEVVVVDN   32 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhC-CCEEEEEeC
Confidence            58999999999999999999874 788887543

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.04  E-value=0.021  Score=50.51  Aligned_cols=104  Identities=13%  Similarity=0.104  Sum_probs=61.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|. |+||+.+++.+... +++++ ++|+... ..+.       . .+ .+.++++++.      .+|+|+...
T Consensus       145 g~~vgIiG~-G~IG~~~A~~l~~~-G~~V~-~~d~~~~-~~~~-------~-~~-~~~~l~ell~------~aDvV~~~~  205 (333)
T 1dxy_A          145 QQTVGVMGT-GHIGQVAIKLFKGF-GAKVI-AYDPYPM-KGDH-------P-DF-DYVSLEDLFK------QSDVIDLHV  205 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSSCC-SSCC-------T-TC-EECCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHC-CCEEE-EECCCcc-hhhH-------h-cc-ccCCHHHHHh------cCCEEEEcC
Confidence            468999996 99999999988764 88876 4665321 1110       1 12 2458999986      699999655


Q ss_pred             Cchh-H---H-HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCce
Q 027650          115 DAST-V---Y-DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (220)
Q Consensus       115 ~p~~-~---~-~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~  158 (220)
                      +... +   . +.....++.|.-+|--.+|--.+ .+.|.++.++.++.
T Consensus       206 P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd-~~aL~~aL~~g~i~  253 (333)
T 1dxy_A          206 PGIEQNTHIINEAAFNLMKPGAIVINTARPNLID-TQAMLSNLKSGKLA  253 (333)
T ss_dssp             CCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBC-HHHHHHHHHTTSEE
T ss_pred             CCchhHHHHhCHHHHhhCCCCcEEEECCCCcccC-HHHHHHHHHhCCcc
Confidence            4221 1   1 22334455565455333342112 24566666665554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.00  E-value=0.022  Score=43.74  Aligned_cols=119  Identities=11%  Similarity=0.145  Sum_probs=62.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC--cchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG--EDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAV  109 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g--~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DV  109 (220)
                      .+|.|+|+ |++|+.+++.+.+. +.+++.+ |++...  +.+.+..    +.|+.+ +   ++.+.+...  .-.++|+
T Consensus         4 ~~vlI~G~-G~vG~~la~~L~~~-g~~V~vi-d~~~~~~~~~~~~~~----~~~~~~i~gd~~~~~~l~~a--~i~~ad~   74 (153)
T 1id1_A            4 DHFIVCGH-SILAINTILQLNQR-GQNVTVI-SNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKA--GIDRCRA   74 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHT-TCCEEEE-ECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHH--TTTTCSE
T ss_pred             CcEEEECC-CHHHHHHHHHHHHC-CCCEEEE-ECCChHHHHHHHHhh----cCCCeEEEcCCCCHHHHHHc--ChhhCCE
Confidence            47999997 99999999998764 7777754 542100  0111111    112222 1   233322110  0037898


Q ss_pred             EEEccCchhHHHH-HHHHHHC-C-CcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          110 VIDFTDASTVYDN-VKQATAF-G-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       110 VIDfT~p~~~~~~-~~~al~~-G-~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      ||-.+..+..... ...+.+. + .++|+-.  .+++..+.|    ++.|+..++.|....+-
T Consensus        75 vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~--~~~~~~~~l----~~~G~~~vi~p~~~~~~  131 (153)
T 1id1_A           75 ILALSDNDADNAFVVLSAKDMSSDVKTVLAV--SDSKNLNKI----KMVHPDIILSPQLFGSE  131 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSSSCEEEEC--SSGGGHHHH----HTTCCSEEECHHHHHHH
T ss_pred             EEEecCChHHHHHHHHHHHHHCCCCEEEEEE--CCHHHHHHH----HHcCCCEEEcHHHHHHH
Confidence            8866655544322 2334343 4 4555433  233433444    44677778878665554

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.96  E-value=0.024  Score=49.49  Aligned_cols=108  Identities=14%  Similarity=0.043  Sum_probs=61.2

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -...+|+|+|. |+||+.+++.+... ++++. ++|+... .+  ...    ..|+.. .++++++.      .+|+|+.
T Consensus       140 l~g~~vgIiG~-G~IG~~~A~~l~~~-G~~V~-~~d~~~~-~~--~~~----~~g~~~-~~l~ell~------~aDvV~l  202 (307)
T 1wwk_A          140 LEGKTIGIIGF-GRIGYQVAKIANAL-GMNIL-LYDPYPN-EE--RAK----EVNGKF-VDLETLLK------ESDVVTI  202 (307)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSSCC-HH--HHH----HTTCEE-CCHHHHHH------HCSEEEE
T ss_pred             cCCceEEEEcc-CHHHHHHHHHHHHC-CCEEE-EECCCCC-hh--hHh----hcCccc-cCHHHHHh------hCCEEEE
Confidence            33468999996 99999999998764 78876 4665321 11  111    234433 48999886      6999996


Q ss_pred             ccCchh-H---H-HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCce
Q 027650          113 FTDAST-V---Y-DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (220)
Q Consensus       113 fT~p~~-~---~-~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~  158 (220)
                      ..+... .   . +.....++.|.-+|--.+|- .-+.+.|.++.++..+.
T Consensus       203 ~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~-~vd~~aL~~aL~~g~i~  252 (307)
T 1wwk_A          203 HVPLVESTYHLINEERLKLMKKTAILINTSRGP-VVDTNALVKALKEGWIA  252 (307)
T ss_dssp             CCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGG-GBCHHHHHHHHHHTSSS
T ss_pred             ecCCChHHhhhcCHHHHhcCCCCeEEEECCCCc-ccCHHHHHHHHHhCCCc
Confidence            654322 1   1 22334455565555333332 11123455555554443

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=95.94  E-value=0.012  Score=51.46  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=27.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~-g~~V~~~~r   60 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGK-GYEVHGLIR   60 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHC-CCEEEEEec
Confidence            58999999999999999998874 788887654

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.93  E-value=0.023  Score=48.37  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=28.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      ..++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r   43 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEH-GYKVRGTAR   43 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEES
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeC
Confidence            3468999999999999999998875 788887654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.92  E-value=0.033  Score=49.07  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=45.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---C--cchhhhhc-CCCCCCccccCCHHHHHhccccCCCc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKAR  107 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---g--~d~g~l~g-~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (220)
                      .++||+|+|+ |.||..++..+....-++ +.++|.+..   +  .++..... ......+..++|+++.+.      ++
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~------~a   79 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT------GA   79 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT------TC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhC------CC
Confidence            3479999998 999999999887643337 677886421   1  11111100 011223445689987775      89


Q ss_pred             cEEEEcc
Q 027650          108 AVVIDFT  114 (220)
Q Consensus       108 DVVIDfT  114 (220)
                      |+||...
T Consensus        80 DiVi~a~   86 (331)
T 1pzg_A           80 DCVIVTA   86 (331)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcc
Confidence            9988553

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.91  E-value=0.014  Score=54.25  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=26.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      +.||+|+|+ |.||..++..+... +++++ ++|++
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~a-G~~V~-l~D~~   37 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASH-GHQVL-LYDIS   37 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHT-TCCEE-EECSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHC-CCeEE-EEECC
Confidence            458999997 99999999988764 77766 46753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.89  E-value=0.021  Score=49.88  Aligned_cols=68  Identities=21%  Similarity=0.255  Sum_probs=41.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCc--EEEEEEecCC--CCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGM--EVAGAIDSHS--VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~--eLvg~vd~~~--~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      .|+||+|+|+ |.||..++..+... ++  +|+ ++|.+.  .|. +.++.... ...+..+.|+ +.+.      ++|+
T Consensus        13 ~~~kV~ViGa-G~vG~~~a~~l~~~-g~~~ev~-L~Di~~~~~g~-a~dl~~~~-~~~i~~t~d~-~~l~------~aD~   80 (303)
T 2i6t_A           13 TVNKITVVGG-GELGIACTLAISAK-GIADRLV-LLDLSEGTKGA-TMDLEIFN-LPNVEISKDL-SASA------HSKV   80 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHH-TCCSEEE-EECCC-----C-HHHHHHHT-CTTEEEESCG-GGGT------TCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhc-CCCCEEE-EEcCCcchHHH-HHHHhhhc-CCCeEEeCCH-HHHC------CCCE
Confidence            4579999997 99999988877654 44  454 677532  121 11222111 1245566788 4454      8999


Q ss_pred             EEEc
Q 027650          110 VIDF  113 (220)
Q Consensus       110 VIDf  113 (220)
                      ||..
T Consensus        81 Vi~a   84 (303)
T 2i6t_A           81 VIFT   84 (303)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9954

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.88  E-value=0.019  Score=50.13  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=27.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~v   67 (220)
                      +++|.|.|++|.+|+.+++.+.+.++. +|+++.
T Consensus        21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~   54 (344)
T 2gn4_A           21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYS   54 (344)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEE
Confidence            368999999999999999999886565 777654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.88  E-value=0.02  Score=50.60  Aligned_cols=31  Identities=26%  Similarity=0.362  Sum_probs=25.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      -||+|+|+ |-||+.++..... .|++++ ++|.
T Consensus         7 ~~VaViGa-G~MG~giA~~~a~-~G~~V~-l~D~   37 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFAS-GGFRVK-LYDI   37 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCCEE-EECS
T ss_pred             CeEEEECC-cHHHHHHHHHHHh-CCCeEE-EEEC
Confidence            38999997 9999999987776 488876 5674

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=95.84  E-value=0.014  Score=50.86  Aligned_cols=63  Identities=17%  Similarity=0.049  Sum_probs=44.6

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -...+|+|+|. |+||+.+++.+... ++++.+ +|+..  ...         ..+...+++++++.      .+|+|+-
T Consensus       120 l~g~tvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~dr~~--~~~---------~~~~~~~~l~ell~------~aDiV~l  179 (290)
T 3gvx_A          120 LYGKALGILGY-GGIGRRVAHLAKAF-GMRVIA-YTRSS--VDQ---------NVDVISESPADLFR------QSDFVLI  179 (290)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHH-TCEEEE-ECSSC--CCT---------TCSEECSSHHHHHH------HCSEEEE
T ss_pred             eecchheeecc-CchhHHHHHHHHhh-CcEEEE-Eeccc--ccc---------ccccccCChHHHhh------ccCeEEE
Confidence            34469999996 99999999998865 889876 46532  111         01234568999987      6999885


Q ss_pred             ccC
Q 027650          113 FTD  115 (220)
Q Consensus       113 fT~  115 (220)
                      ..+
T Consensus       180 ~~P  182 (290)
T 3gvx_A          180 AIP  182 (290)
T ss_dssp             CCC
T ss_pred             Eee
Confidence            544

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=95.83  E-value=0.011  Score=52.04  Aligned_cols=65  Identities=17%  Similarity=0.143  Sum_probs=42.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ..++|+|+|. |+||+.+++.+... ++++.+ +|+..  +....+.      ......++++++.      .+|+|+-.
T Consensus       138 ~g~tvGIiG~-G~IG~~vA~~l~~~-G~~V~~-~dr~~--~~~~~~~------~~~~~~~l~ell~------~aDiV~l~  200 (315)
T 3pp8_A          138 EEFSVGIMGA-GVLGAKVAESLQAW-GFPLRC-WSRSR--KSWPGVE------SYVGREELRAFLN------QTRVLINL  200 (315)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTT-TCCEEE-EESSC--CCCTTCE------EEESHHHHHHHHH------TCSEEEEC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHC-CCEEEE-EcCCc--hhhhhhh------hhcccCCHHHHHh------hCCEEEEe
Confidence            3469999996 99999999998764 888886 45432  1111000      0011257889886      79998854


Q ss_pred             cC
Q 027650          114 TD  115 (220)
Q Consensus       114 T~  115 (220)
                      .+
T Consensus       201 ~P  202 (315)
T 3pp8_A          201 LP  202 (315)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=95.79  E-value=0.031  Score=48.37  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=28.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      |++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r   33 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEK-GYEVHGIKR   33 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEEC
Confidence            578999999999999999998875 788887543

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.79  E-value=0.013  Score=49.99  Aligned_cols=121  Identities=15%  Similarity=0.079  Sum_probs=66.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (220)
                      ||+|+|+ |+||+.++..+... +.+=+-+++++.  ..+.++.   +.++...++++++++.      ++|+||..|+.
T Consensus       110 ~vliiGa-Gg~a~ai~~~L~~~-G~~~I~v~nR~~--~ka~~la---~~~~~~~~~~~~~~~~------~aDiVInatp~  176 (253)
T 3u62_A          110 PVVVVGA-GGAARAVIYALLQM-GVKDIWVVNRTI--ERAKALD---FPVKIFSLDQLDEVVK------KAKSLFNTTSV  176 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHT-TCCCEEEEESCH--HHHHTCC---SSCEEEEGGGHHHHHH------TCSEEEECSST
T ss_pred             eEEEECc-HHHHHHHHHHHHHc-CCCEEEEEeCCH--HHHHHHH---HHcccCCHHHHHhhhc------CCCEEEECCCC
Confidence            8999997 99999999988864 663344666642  2233333   1333334567777775      79999976642


Q ss_pred             hhH---HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          117 STV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       117 ~~~---~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      ...   ...-...++.+.-++-=..+    . ..+.+.|++.|++. +.||  +++ |+.+.+.++
T Consensus       177 gm~p~~~~i~~~~l~~~~~V~Divy~----~-T~ll~~A~~~G~~~-~~~G--l~M-Lv~Qa~~af  233 (253)
T 3u62_A          177 GMKGEELPVSDDSLKNLSLVYDVIYF----D-TPLVVKARKLGVKH-IIKG--NLM-FYYQAMENL  233 (253)
T ss_dssp             TTTSCCCSCCHHHHTTCSEEEECSSS----C-CHHHHHHHHHTCSE-EECT--HHH-HHHHHHHHH
T ss_pred             CCCCCCCCCCHHHhCcCCEEEEeeCC----C-cHHHHHHHHCCCcE-EECC--HHH-HHHHHHHHH
Confidence            110   01112334555444322223    1 23455556667662 2255  344 445554443

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=95.78  E-value=0.015  Score=52.49  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=54.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCcc--ccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIP--VMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~l~g~~~~~gv~--v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ..+|+|+|+ |.||+.+++.+... ++ +++ ++++..  ..+.+++.   .+|+.  .++++++++.      .+|+||
T Consensus       167 g~~VlIiGa-G~iG~~~a~~l~~~-G~~~V~-v~~r~~--~ra~~la~---~~g~~~~~~~~l~~~l~------~aDvVi  232 (404)
T 1gpj_A          167 DKTVLVVGA-GEMGKTVAKSLVDR-GVRAVL-VANRTY--ERAVELAR---DLGGEAVRFDELVDHLA------RSDVVV  232 (404)
T ss_dssp             TCEEEEESC-CHHHHHHHHHHHHH-CCSEEE-EECSSH--HHHHHHHH---HHTCEECCGGGHHHHHH------TCSEEE
T ss_pred             CCEEEEECh-HHHHHHHHHHHHHC-CCCEEE-EEeCCH--HHHHHHHH---HcCCceecHHhHHHHhc------CCCEEE
Confidence            358999997 99999999988765 67 555 556532  12212221   11222  1457777775      799999


Q ss_pred             EccCchhH---HHHHHH-HHH---CCCcEEEeCC
Q 027650          112 DFTDASTV---YDNVKQ-ATA---FGMRSVVYVP  138 (220)
Q Consensus       112 DfT~p~~~---~~~~~~-al~---~G~~vVigTt  138 (220)
                      ++|.....   .+.+.. +++   .|.-++++..
T Consensus       233 ~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          233 SATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             ECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             EccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence            98753322   144444 343   3556667654

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=95.77  E-value=0.017  Score=50.77  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=26.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSH   70 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~   70 (220)
                      |||+|+||+|.+|..++..+... +-..=+.++|..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~   36 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecC
Confidence            69999998899999999888765 433334467764

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.76  E-value=0.019  Score=55.10  Aligned_cols=97  Identities=13%  Similarity=0.143  Sum_probs=59.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC----------------Ccchhh-----hhcCCCCCCcccc--
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV----------------GEDIGM-----VCDMEQPLEIPVM--   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~----------------g~d~g~-----l~g~~~~~gv~v~--   91 (220)
                      ..||+|+|+ |+.|..+++.+.. .|+.=+.++|.+..                |+.-.+     +..+.....+..+  
T Consensus       326 ~arVLIVGa-GGLGs~vA~~La~-aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~  403 (615)
T 4gsl_A          326 NTKVLLLGA-GTLGCYVSRALIA-WGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL  403 (615)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeec
Confidence            358999998 9999999999876 47777778885321                111000     1101000111111  


Q ss_pred             -------------------CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCCC
Q 027650           92 -------------------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus        92 -------------------~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTtG  139 (220)
                                         +++++.+.      ++|+|||++..... ...-..|.++|+++|.+.-|
T Consensus       404 ~Ipm~gh~v~~e~~~~l~~~~l~~ll~------~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aalG  465 (615)
T 4gsl_A          404 SIPMIGHKLVNEEAQHKDFDRLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALG  465 (615)
T ss_dssp             CCCCTTCCCSCHHHHHHHHHHHHHHHH------HCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEEEC
T ss_pred             cccccCccccchhhhcCCHHHHHHHhh------cCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEEcc
Confidence                               12344454      68999998864444 56668889999999876434

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=95.75  E-value=0.016  Score=50.97  Aligned_cols=89  Identities=13%  Similarity=0.031  Sum_probs=57.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc--cccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .+|+|+|+ |.||+.+++.+.....++-+.+++++ ..+...+-..  ..+|+  .++ ++++++.      ++|+||-+
T Consensus       122 ~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~--~~~g~~~~~~-~~~eav~------~aDIVi~a  190 (313)
T 3hdj_A          122 SVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIG--RRCGVPARMA-APADIAA------QADIVVTA  190 (313)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHH--HHHTSCEEEC-CHHHHHH------HCSEEEEC
T ss_pred             cEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHH--HhcCCeEEEe-CHHHHHh------hCCEEEEc
Confidence            48999996 99999999998875557777788886 2222222110  01233  345 9999986      79999966


Q ss_pred             cCchhHHHHH-HHHHHCCCcEE-EeC
Q 027650          114 TDASTVYDNV-KQATAFGMRSV-VYV  137 (220)
Q Consensus       114 T~p~~~~~~~-~~al~~G~~vV-igT  137 (220)
                      |+...  +.+ ...++.|.+++ +|+
T Consensus       191 T~s~~--pvl~~~~l~~G~~V~~vGs  214 (313)
T 3hdj_A          191 TRSTT--PLFAGQALRAGAFVGAIGS  214 (313)
T ss_dssp             CCCSS--CSSCGGGCCTTCEEEECCC
T ss_pred             cCCCC--cccCHHHcCCCcEEEECCC
Confidence            64321  111 23467888887 454

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.73  E-value=0.033  Score=48.49  Aligned_cols=70  Identities=11%  Similarity=0.046  Sum_probs=43.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC---CcchhhhhcC----CCCCCccccCCHHHHHhccccCCCc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV---GEDIGMVCDM----EQPLEIPVMSDLTMVLGSISQSKAR  107 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~---g~d~g~l~g~----~~~~gv~v~~dl~~~l~~~~~~~~~  107 (220)
                      |+||+|+|+ |.||..++..+....-++ +.++|.+..   |. +.++...    .....+..++|+ +.+.      ++
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~-~~dl~~~~~~~~~~~~i~~t~d~-~a~~------~a   71 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGK-ALDLYEASPIEGFDVRVTGTNNY-ADTA------NS   71 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHH-HHHHHTTHHHHTCCCCEEEESCG-GGGT------TC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHH-HHhHHHhHhhcCCCeEEEECCCH-HHHC------CC
Confidence            479999998 999999998887665458 778886421   10 1111110    001223335787 4554      79


Q ss_pred             cEEEEcc
Q 027650          108 AVVIDFT  114 (220)
Q Consensus       108 DVVIDfT  114 (220)
                      |+||...
T Consensus        72 D~Vi~a~   78 (309)
T 1ur5_A           72 DVIVVTS   78 (309)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcC
Confidence            9999553

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=95.72  E-value=0.027  Score=47.86  Aligned_cols=30  Identities=30%  Similarity=0.313  Sum_probs=25.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+
T Consensus        30 k~vlVTGas~gIG~aia~~la~~-G~~V~~~   59 (277)
T 3gvc_A           30 KVAIVTGAGAGIGLAVARRLADE-GCHVLCA   59 (277)
T ss_dssp             CEEEETTTTSTHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCEEEEE
Confidence            46899999999999999998874 8887754

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.69  E-value=0.059  Score=47.01  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=27.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      .||.|+|+ |..|..+++.+... ++-=+.++|.+
T Consensus        37 ~~VlVvGa-GGlGs~va~~La~a-GVG~i~lvD~D   69 (292)
T 3h8v_A           37 FAVAIVGV-GGVGSVTAEMLTRC-GIGKLLLFDYD   69 (292)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCSEEEEECCC
T ss_pred             CeEEEECc-CHHHHHHHHHHHHc-CCCEEEEECCC
Confidence            59999998 99999999998764 66666678853

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.68  E-value=0.034  Score=47.30  Aligned_cols=32  Identities=25%  Similarity=0.266  Sum_probs=27.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      ++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r   35 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEK-GYEVYGADR   35 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEECS
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-CCEEEEEEC
Confidence            68999999999999999998874 788887543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=95.67  E-value=0.04  Score=50.13  Aligned_cols=102  Identities=17%  Similarity=0.030  Sum_probs=59.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|. |+||+.+++.+.. -++++.+ +|+... ..         ..++....++++++.      .+|+|+-.
T Consensus       144 ~gktlGiIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~-~~---------~~~~~~~~~l~ell~------~aDvV~l~  204 (404)
T 1sc6_A          144 RGKKLGIIGY-GHIGTQLGILAES-LGMYVYF-YDIENK-LP---------LGNATQVQHLSDLLN------MSDVVSLH  204 (404)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSCC-CC---------CTTCEECSCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHH-CCCEEEE-EcCCch-hc---------cCCceecCCHHHHHh------cCCEEEEc
Confidence            3468999996 9999999998876 4899764 676321 10         012344568999987      69998855


Q ss_pred             cCch-hH---H-HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhc
Q 027650          114 TDAS-TV---Y-DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA  155 (220)
Q Consensus       114 T~p~-~~---~-~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~  155 (220)
                      .+.. .+   . +.....++.|.-+|--.+|---++ +.|.++.++.
T Consensus       205 ~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~-~aL~~aL~~g  250 (404)
T 1sc6_A          205 VPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI-PALADALASK  250 (404)
T ss_dssp             CCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCH-HHHHHHHHTT
T ss_pred             cCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhH-HHHHHHHHcC
Confidence            4322 11   1 223344555555553333421111 3444444443

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.67  E-value=0.018  Score=50.99  Aligned_cols=66  Identities=14%  Similarity=0.077  Sum_probs=44.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|. |+||+.+++.+.. -++++++ +|+..  .+.....    ..|+. +.++++++.      .+|+|+..
T Consensus       144 ~g~tvGIIG~-G~IG~~vA~~l~~-~G~~V~~-~d~~~--~~~~~~~----~~g~~-~~~l~ell~------~aDvV~l~  207 (330)
T 4e5n_A          144 DNATVGFLGM-GAIGLAMADRLQG-WGATLQY-HEAKA--LDTQTEQ----RLGLR-QVACSELFA------SSDFILLA  207 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHTTT-SCCEEEE-ECSSC--CCHHHHH----HHTEE-ECCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHH-CCCEEEE-ECCCC--CcHhHHH----hcCce-eCCHHHHHh------hCCEEEEc
Confidence            3469999996 9999999998765 4888765 56542  1111111    12333 458999986      69998855


Q ss_pred             cC
Q 027650          114 TD  115 (220)
Q Consensus       114 T~  115 (220)
                      .+
T Consensus       208 ~P  209 (330)
T 4e5n_A          208 LP  209 (330)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=95.67  E-value=0.014  Score=53.64  Aligned_cols=135  Identities=12%  Similarity=0.130  Sum_probs=70.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC----------CCCcchhhhhcCCCCCC-cc-----ccCCHHHHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH----------SVGEDIGMVCDMEQPLE-IP-----VMSDLTMVL   98 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~----------~~g~d~g~l~g~~~~~g-v~-----v~~dl~~~l   98 (220)
                      ..||+|.|. |++|+..++.+.+ .+..+|++.|++          ..|-|..++.......+ +.     -+-+.++++
T Consensus       212 g~~vaVqG~-GnVG~~~a~~L~~-~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~~~~  289 (421)
T 2yfq_A          212 DAKIAVQGF-GNVGTFTVKNIER-QGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFW  289 (421)
T ss_dssp             GSCEEEECC-SHHHHHHHHHHHH-TTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC----------------
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCccchh
Confidence            368999996 9999999998876 589999999875          23444443332110001 00     011234555


Q ss_pred             hccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCc---HHHHHH
Q 027650           99 GSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS---IGSILL  172 (220)
Q Consensus        99 ~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS---~Gv~ll  172 (220)
                      .     .++||+|-++.++.. .+++.   +.+..+|++.-  .++++-.+.|.    ++|+  ++.|.+.   =||.+-
T Consensus       290 ~-----~~~DIliP~A~~n~i~~~~A~---~l~ak~VvEgAN~P~t~ea~~il~----~~GI--~~~Pd~~aNaGGV~vS  355 (421)
T 2yfq_A          290 T-----KEYDIIVPAALENVITGERAK---TINAKLVCEAANGPTTPEGDKVLT----ERGI--NLTPDILTNSGGVLVS  355 (421)
T ss_dssp             ----------CEEECSCSSCSCHHHHT---TCCCSEEECCSSSCSCHHHHHHHH----HHTC--EEECHHHHTTHHHHHH
T ss_pred             c-----CCccEEEEcCCcCcCCcccHH---HcCCeEEEeCCccccCHHHHHHHH----HCCC--EEEChHHHhCCCeEEE
Confidence            4     389999998876655 45554   34778887765  35655433333    4444  4555443   355331


Q ss_pred             -HHHHHHhcCCCCC
Q 027650          173 -QQAAISASFHYKN  185 (220)
Q Consensus       173 -~~~a~~~~~~~~d  185 (220)
                       .+..+....++|+
T Consensus       356 ~~E~~qN~~~~~w~  369 (421)
T 2yfq_A          356 YYEWVQNQYGYYWT  369 (421)
T ss_dssp             HHHHHHHHHTCCCC
T ss_pred             EEEEEecCccCcCC
Confidence             2233344444554

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.66  E-value=0.023  Score=50.37  Aligned_cols=66  Identities=17%  Similarity=0.180  Sum_probs=44.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -...+|+|+|. |+||+.+++.+.. -++++.+ +|+... ..  ...    ..|+. +.++++++.      .+|+|+.
T Consensus       163 l~g~tvgIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~-~~--~~~----~~g~~-~~~l~ell~------~aDvV~l  225 (335)
T 2g76_A          163 LNGKTLGILGL-GRIGREVATRMQS-FGMKTIG-YDPIIS-PE--VSA----SFGVQ-QLPLEEIWP------LCDFITV  225 (335)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHT-TTCEEEE-ECSSSC-HH--HHH----HTTCE-ECCHHHHGG------GCSEEEE
T ss_pred             CCcCEEEEEeE-CHHHHHHHHHHHH-CCCEEEE-ECCCcc-hh--hhh----hcCce-eCCHHHHHh------cCCEEEE
Confidence            33468999996 9999999998875 4788764 665321 11  111    22433 358999886      7999996


Q ss_pred             ccC
Q 027650          113 FTD  115 (220)
Q Consensus       113 fT~  115 (220)
                      ..+
T Consensus       226 ~~P  228 (335)
T 2g76_A          226 HTP  228 (335)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.64  E-value=0.014  Score=52.12  Aligned_cols=66  Identities=14%  Similarity=0.013  Sum_probs=46.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|. |+||+.+++.+... ++++++ +|+..   +.....    ..|+...+++++++.      .+|+|+..
T Consensus       159 ~g~tvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~---~~~~~~----~~g~~~~~~l~ell~------~aDiV~l~  222 (352)
T 3gg9_A          159 KGQTLGIFGY-GKIGQLVAGYGRAF-GMNVLV-WGREN---SKERAR----ADGFAVAESKDALFE------QSDVLSVH  222 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSHH---HHHHHH----HTTCEECSSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhC-CCEEEE-ECCCC---CHHHHH----hcCceEeCCHHHHHh------hCCEEEEe
Confidence            3469999996 99999999998765 899876 56531   111111    235555679999997      69998855


Q ss_pred             cC
Q 027650          114 TD  115 (220)
Q Consensus       114 T~  115 (220)
                      .+
T Consensus       223 ~P  224 (352)
T 3gg9_A          223 LR  224 (352)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.62  E-value=0.024  Score=50.96  Aligned_cols=64  Identities=14%  Similarity=0.118  Sum_probs=44.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|. |+||+.+++.+... ++++.+ +|+..  . .....    ..|+. +.++++++.      .+|+|+-..
T Consensus       176 gktvGIIGl-G~IG~~vA~~l~~f-G~~V~~-~d~~~--~-~~~~~----~~g~~-~~~l~ell~------~aDvV~l~~  238 (365)
T 4hy3_A          176 GSEIGIVGF-GDLGKALRRVLSGF-RARIRV-FDPWL--P-RSMLE----ENGVE-PASLEDVLT------KSDFIFVVA  238 (365)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHTTS-CCEEEE-ECSSS--C-HHHHH----HTTCE-ECCHHHHHH------SCSEEEECS
T ss_pred             CCEEEEecC-CcccHHHHHhhhhC-CCEEEE-ECCCC--C-HHHHh----hcCee-eCCHHHHHh------cCCEEEEcC
Confidence            469999996 99999999988654 888775 66542  1 11111    12333 568999997      799998554


Q ss_pred             C
Q 027650          115 D  115 (220)
Q Consensus       115 ~  115 (220)
                      +
T Consensus       239 P  239 (365)
T 4hy3_A          239 A  239 (365)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.61  E-value=0.021  Score=50.48  Aligned_cols=65  Identities=15%  Similarity=0.310  Sum_probs=43.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|. |+||+.+++.+... ++++.+ +|+..  +....+.      ....+.++++++.      .+|+|+..
T Consensus       136 ~gktvGIiGl-G~IG~~vA~~l~~~-G~~V~~-~dr~~--~~~~~~~------~~~~~~~l~ell~------~aDvV~l~  198 (324)
T 3evt_A          136 TGQQLLIYGT-GQIGQSLAAKASAL-GMHVIG-VNTTG--HPADHFH------ETVAFTATADALA------TANFIVNA  198 (324)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHT-TCEEEE-EESSC--CCCTTCS------EEEEGGGCHHHHH------HCSEEEEC
T ss_pred             cCCeEEEECc-CHHHHHHHHHHHhC-CCEEEE-ECCCc--chhHhHh------hccccCCHHHHHh------hCCEEEEc
Confidence            3468999996 99999999998764 899886 56532  1111110      1122468889886      69998855


Q ss_pred             cC
Q 027650          114 TD  115 (220)
Q Consensus       114 T~  115 (220)
                      .+
T Consensus       199 lP  200 (324)
T 3evt_A          199 LP  200 (324)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=95.59  E-value=0.048  Score=46.09  Aligned_cols=31  Identities=32%  Similarity=0.449  Sum_probs=26.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |||.|.|++|.+|+.+++.+.+ .+.+++++.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~   31 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLA-RGLEVAVLD   31 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEEC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHH-CCCEEEEEE
Confidence            5899999999999999999886 478887653

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=95.59  E-value=0.051  Score=49.70  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=31.9

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcC--CcEEEEEEec
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKAR--GMEVAGAIDS   69 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~--~~eLvg~vd~   69 (220)
                      ...+++|.|.|++|.+|+.+++.+.+.+  +.+|+++..+
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~  109 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRA  109 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence            3567899999999999999999998765  6899887653

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=95.59  E-value=0.027  Score=50.26  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=30.2

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..+++|.|.|++|.+|+.+++.+. ..+.+++++..+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~R~  102 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQ-GYSHRIYCFIRA  102 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHT-TTEEEEEEEEEC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHH-cCCCEEEEEECC
Confidence            456799999999999999999994 468888887654

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=95.57  E-value=0.029  Score=51.56  Aligned_cols=135  Identities=14%  Similarity=0.139  Sum_probs=80.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCCc------------cccCCHHHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLEI------------PVMSDLTMV   97 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~gv------------~v~~dl~~~   97 (220)
                      ..+|+|.|. |+||+..++.+.+ .+.++|++.|+     +..|-|..++.......+-            ..+.+.+++
T Consensus       210 gk~vaVqG~-GnVG~~aa~~L~e-~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~  287 (421)
T 1v9l_A          210 GKTVAIQGM-GNVGRWTAYWLEK-MGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAI  287 (421)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHT-TTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGG
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhh
Confidence            368999996 9999999998876 59999999996     3456566555443222221            112133566


Q ss_pred             HhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCc---HHHHH
Q 027650           98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS---IGSIL  171 (220)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS---~Gv~l  171 (220)
                      +.     .++|+++-+..+... .+++.   +-+..+|+|--  .++++-.+   .+ +++|  +++.|.|.   =||..
T Consensus       288 ~~-----~~~Dil~P~A~~~~I~~~~a~---~l~ak~V~EgAN~p~t~~a~~---~l-~~~G--i~~~PD~~aNaGGV~~  353 (421)
T 1v9l_A          288 FK-----LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAER---IL-YERG--VVVVPDILANAGGVIM  353 (421)
T ss_dssp             GG-----CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHHH---HH-HTTT--CEEECHHHHSTHHHHH
T ss_pred             hc-----CCccEEEecCcCCccchhhHH---HcCceEEEecCCCcCCHHHHH---HH-HHCC--CEEeChHHhhCCCeee
Confidence            65     489999988765544 23333   34889998865  35654322   23 3434  45555443   35533


Q ss_pred             -HHHHHHHhcCCCCC
Q 027650          172 -LQQAAISASFHYKN  185 (220)
Q Consensus       172 -l~~~a~~~~~~~~d  185 (220)
                       -.+..+.+...+|+
T Consensus       354 S~~E~~qn~~~~~w~  368 (421)
T 1v9l_A          354 SYLEWVENLQWYIWD  368 (421)
T ss_dssp             HHHHHHHHHTTCCCC
T ss_pred             eHHHHHhhccccCCC
Confidence             12334444444444

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=95.55  E-value=0.026  Score=48.32  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=28.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+.||.|.|++|.+|+.+++.+.+ .+.++++.+.+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~-~G~~V~~~~r~   38 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLE-RGYTVRATVRD   38 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESC
T ss_pred             CCCEEEEECCchHHHHHHHHHHHH-CCCEEEEEECC
Confidence            356899999999999999999887 48898876643

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.54  E-value=0.095  Score=45.13  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=28.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +++|.|.|++|.+|+.+++.+.+. +.+++++..+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~   42 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLT   42 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhC-CCeEEEEeCC
Confidence            368999999999999999998874 7888876543

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.53  E-value=0.036  Score=50.87  Aligned_cols=136  Identities=18%  Similarity=0.241  Sum_probs=80.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC-ccc-cCCHHHHHhccccCCCc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-IPV-MSDLTMVLGSISQSKAR  107 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~g-v~v-~~dl~~~l~~~~~~~~~  107 (220)
                      ..+|+|.|. |++|+..++.+.+ .+..+|++.|+     +..|-|..++..+....+ +.- .-+-++++.     .++
T Consensus       218 gk~vaVqG~-GnVG~~~a~~L~~-~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~-----~~~  290 (419)
T 3aoe_E          218 GARVVVQGL-GQVGAAVALHAER-LGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFG-----LEA  290 (419)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGG-----SSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHH-CCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhc-----cCc
Confidence            468999995 9999999998876 49999999996     345666554432211111 110 012245554     489


Q ss_pred             cEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCc---HHHHH-HHHHHHHhc
Q 027650          108 AVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS---IGSIL-LQQAAISAS  180 (220)
Q Consensus       108 DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS---~Gv~l-l~~~a~~~~  180 (220)
                      ||++-++.++.. .+++.   +-+..+|+|--  .++++-.+.|    +++|  +++.|.+.   =||.. -.+..+.+.
T Consensus       291 DVliP~A~~n~i~~~~A~---~l~ak~V~EgAN~p~t~~A~~~L----~~~G--i~~~PD~~aNaGGV~~S~~E~~qn~~  361 (419)
T 3aoe_E          291 EVLVLAAREGALDGDRAR---QVQAQAVVEVANFGLNPEAEAYL----LGKG--ALVVPDLLSGGGGLLASYLEWVQDLN  361 (419)
T ss_dssp             SEEEECSCTTCBCHHHHT---TCCCSEEEECSTTCBCHHHHHHH----HHHT--CEEECHHHHTCHHHHHHHHHHHHHHH
T ss_pred             eEEEecccccccccchHh---hCCceEEEECCCCcCCHHHHHHH----HHCC--CEEECHHHHhCCCchhhHHHHhhccc
Confidence            999998876655 34444   44889999865  3565533333    2334  55556543   25532 123444454


Q ss_pred             CCCCCe
Q 027650          181 FHYKNV  186 (220)
Q Consensus       181 ~~~~di  186 (220)
                      +..|+-
T Consensus       362 ~~~w~~  367 (419)
T 3aoe_E          362 MFFWSP  367 (419)
T ss_dssp             TCCCCH
T ss_pred             ccCCCH
Confidence            455553

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.52  E-value=0.041  Score=46.14  Aligned_cols=31  Identities=29%  Similarity=0.330  Sum_probs=26.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++...
T Consensus        29 k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~   59 (260)
T 3un1_A           29 KVVVITGASQGIGAGLVRAYRDR-NYRVVATS   59 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEe
Confidence            47999999999999999998874 88887654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.51  E-value=0.031  Score=49.35  Aligned_cols=105  Identities=12%  Similarity=-0.000  Sum_probs=60.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|. |+||+.+++.+... ++++.+ +|+... +.+.+        .+...+++++++.      .+|+|+...
T Consensus       146 g~~vgIiG~-G~IG~~~A~~l~~~-G~~V~~-~d~~~~-~~~~~--------~~~~~~~l~ell~------~aDvV~l~~  207 (333)
T 1j4a_A          146 DQVVGVVGT-GHIGQVFMQIMEGF-GAKVIT-YDIFRN-PELEK--------KGYYVDSLDDLYK------QADVISLHV  207 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSSCC-HHHHH--------TTCBCSCHHHHHH------HCSEEEECS
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHC-CCEEEE-ECCCcc-hhHHh--------hCeecCCHHHHHh------hCCEEEEcC
Confidence            368999996 99999999998764 888764 665321 11111        1233348999886      699999655


Q ss_pred             Cchh-HH----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCce
Q 027650          115 DAST-VY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG  158 (220)
Q Consensus       115 ~p~~-~~----~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~  158 (220)
                      +... +.    +.....++.|.-+|--..|-- -+.+.|.++.++.++.
T Consensus       208 p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~-vd~~aL~~aL~~g~i~  255 (333)
T 1j4a_A          208 PDVPANVHMINDESIAKMKQDVVIVNVSRGPL-VDTDAVIRGLDSGKIF  255 (333)
T ss_dssp             CCCGGGTTCBSHHHHHHSCTTEEEEECSCGGG-BCHHHHHHHHHHTSEE
T ss_pred             CCcHHHHHHHhHHHHhhCCCCcEEEECCCCcc-cCHHHHHHHHHhCCce
Confidence            4221 11    223334455544443223321 1124566666654444

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=95.50  E-value=0.026  Score=49.94  Aligned_cols=64  Identities=17%  Similarity=0.276  Sum_probs=43.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|. |+||+.+++.+... ++++.+ +|+..  +....+      .+...+.++++++.      .+|+|+-.
T Consensus       139 ~g~tvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~dr~~--~~~~~~------~~~~~~~~l~ell~------~aDvV~l~  201 (324)
T 3hg7_A          139 KGRTLLILGT-GSIGQHIAHTGKHF-GMKVLG-VSRSG--RERAGF------DQVYQLPALNKMLA------QADVIVSV  201 (324)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSSC--CCCTTC------SEEECGGGHHHHHH------TCSEEEEC
T ss_pred             ccceEEEEEE-CHHHHHHHHHHHhC-CCEEEE-EcCCh--HHhhhh------hcccccCCHHHHHh------hCCEEEEe
Confidence            3469999996 99999999998765 899875 56532  111111      11122568899886      78988854


Q ss_pred             c
Q 027650          114 T  114 (220)
Q Consensus       114 T  114 (220)
                      .
T Consensus       202 l  202 (324)
T 3hg7_A          202 L  202 (324)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=95.46  E-value=0.073  Score=45.40  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=26.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |||.|.|++|.+|+.+++.+.+. +.+++++.
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~   31 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEe
Confidence            48999999999999999998874 78888753

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.46  E-value=0.048  Score=46.14  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=27.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .+++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r   44 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQ-NVEVFGTSR   44 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEES
T ss_pred             CcceEEEECCCChHHHHHHHHHHHC-CCEEEEEec
Confidence            4679999999999999999998874 788887543

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=95.45  E-value=0.028  Score=52.01  Aligned_cols=103  Identities=13%  Similarity=0.173  Sum_probs=68.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCc----chhhhhcCCCCC-----------CccccCCH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGE----DIGMVCDMEQPL-----------EIPVMSDL   94 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~----d~g~l~g~~~~~-----------gv~v~~dl   94 (220)
                      ..+|+|.|. |+||+..++.+.+. +.+||++.|+     +..|-    |+..+.......           +.... +.
T Consensus       230 g~~v~VqG~-GnVG~~~a~~L~~~-GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i-~~  306 (449)
T 1bgv_A          230 GKTVALAGF-GNVAWGAAKKLAEL-GAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-PG  306 (449)
T ss_dssp             TCEEEECCS-SHHHHHHHHHHHHH-TCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-ET
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEe-Cc
Confidence            468999996 99999999988764 9999999995     33454    333332210000           11111 12


Q ss_pred             HHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHH
Q 027650           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETV  145 (220)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~  145 (220)
                      ++++.     .++|+++-++.+... .+++.....+|+.+|++--  .++++..
T Consensus       307 ~e~~~-----~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~  355 (449)
T 1bgv_A          307 EKPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL  355 (449)
T ss_dssp             CCGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH
T ss_pred             hhhhc-----CCcceeeccccccccchhhHHHHHhcCCeEEEeCCCCcCCHHHH
Confidence            33454     489999988776655 6888888889999999866  4566543

>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A

Probab=95.44  E-value=0.12  Score=46.98  Aligned_cols=37  Identities=16%  Similarity=0.225  Sum_probs=32.3

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEec
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDS   69 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~   69 (220)
                      +.|.||.|.|+||-+|..-.+.+.++|+ ++++++...
T Consensus         7 ~~~k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aL~ag   44 (406)
T 1q0q_A            7 SGMKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG   44 (406)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CCceeEEEEccCcHHHHHHHHHHHhCCCccEEEEEEcC
Confidence            5788999999999999999999999987 999999873

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.43  E-value=0.052  Score=48.36  Aligned_cols=92  Identities=16%  Similarity=0.205  Sum_probs=54.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC------------cchhh---------hhcCCCCCCcccc-C-
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG------------EDIGM---------VCDMEQPLEIPVM-S-   92 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g------------~d~g~---------l~g~~~~~gv~v~-~-   92 (220)
                      -||.|+|+ |+.|..+++.+... ++.=+.++|.+...            .|+|.         +..+.....+..+ . 
T Consensus       119 ~~VlvvG~-GglGs~va~~La~a-Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  196 (353)
T 3h5n_A          119 AKVVILGC-GGIGNHVSVILATS-GIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALN  196 (353)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhC-CCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecc
Confidence            58999998 99999999988764 77666678853210            11110         0000000111111 1 


Q ss_pred             -----CHHHHHhccccCCCccEEEEccC-ch-hHHHHHHHHHHCCCcEEEe
Q 027650           93 -----DLTMVLGSISQSKARAVVIDFTD-AS-TVYDNVKQATAFGMRSVVY  136 (220)
Q Consensus        93 -----dl~~~l~~~~~~~~~DVVIDfT~-p~-~~~~~~~~al~~G~~vVig  136 (220)
                           ++++ +      .++|+|||++. +. .-...-..|.++|+|+|.+
T Consensus       197 i~~~~~~~~-~------~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~  240 (353)
T 3h5n_A          197 INDYTDLHK-V------PEADIWVVSADHPFNLINWVNKYCVRANQPYINA  240 (353)
T ss_dssp             CCSGGGGGG-S------CCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEE
T ss_pred             cCchhhhhH-h------ccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEE
Confidence                 1333 3      37999999885 33 3345557899999999854

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.42  E-value=0.055  Score=47.21  Aligned_cols=87  Identities=17%  Similarity=0.136  Sum_probs=49.9

Q ss_pred             CCceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEE
Q 027650           34 SNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV  110 (220)
                      .|.||.++|. |++|.. +++.+.+ .+.++.+ +|..........+.    ..|++++  .+.+.+...     ++|+|
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~-~G~~V~~-~D~~~~~~~~~~L~----~~gi~v~~g~~~~~l~~~-----~~d~v   70 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKE-AGFEVSG-CDAKMYPPMSTQLE----ALGIDVYEGFDAAQLDEF-----KADVY   70 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHH-TTCEEEE-EESSCCTTHHHHHH----HTTCEEEESCCGGGGGSC-----CCSEE
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHh-CCCEEEE-EcCCCCcHHHHHHH----hCCCEEECCCCHHHcCCC-----CCCEE
Confidence            3679999997 999996 7776655 5888765 67532111122232    3466664  344444311     68988


Q ss_pred             EEccC--chhHHHHHHHHHHCCCcEE
Q 027650          111 IDFTD--ASTVYDNVKQATAFGMRSV  134 (220)
Q Consensus       111 IDfT~--p~~~~~~~~~al~~G~~vV  134 (220)
                      | .|+  |.. .+.+..|.++|++++
T Consensus        71 V-~Spgi~~~-~p~~~~a~~~gi~v~   94 (326)
T 3eag_A           71 V-IGNVAKRG-MDVVEAILNLGLPYI   94 (326)
T ss_dssp             E-ECTTCCTT-CHHHHHHHHTTCCEE
T ss_pred             E-ECCCcCCC-CHHHHHHHHcCCcEE
Confidence            8 442  322 233455566666554

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=95.41  E-value=0.057  Score=52.57  Aligned_cols=34  Identities=21%  Similarity=0.150  Sum_probs=27.0

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..+.||+|+|+ |.||..++..+... +++++. +|+
T Consensus       310 ~~~~kV~VIGa-G~MG~~iA~~la~a-G~~V~l-~D~  343 (725)
T 2wtb_A          310 RKIKKVAIIGG-GLMGSGIATALILS-NYPVIL-KEV  343 (725)
T ss_dssp             CCCCCEEEECC-SHHHHHHHHHHHTT-TCCEEE-ECS
T ss_pred             ccCcEEEEEcC-CHhhHHHHHHHHhC-CCEEEE-EEC
Confidence            34679999997 99999999988764 787664 565

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=95.39  E-value=0.016  Score=53.20  Aligned_cols=37  Identities=14%  Similarity=0.140  Sum_probs=30.9

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ...|++|.|.|++|.+|+.+++.+ ...+.+++++...
T Consensus       147 ~~~~~~VLVTGatG~iG~~l~~~L-~~~g~~V~~l~R~  183 (508)
T 4f6l_B          147 HRPLGNTLLTGATGFLGAYLIEAL-QGYSHRIYCFIRA  183 (508)
T ss_dssp             BCCCEEEEESCTTSHHHHHHHHHT-BTTEEEEEEEEES
T ss_pred             cCCCCeEEEECCccchHHHHHHHH-HhcCCEEEEEECC
Confidence            355789999999999999999998 4568899887654

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.39  E-value=0.23  Score=41.81  Aligned_cols=108  Identities=16%  Similarity=0.166  Sum_probs=51.9

Q ss_pred             cccccccccCCccccccC---CCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc
Q 027650           12 MHHISQNVKAKRFISCST---NPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI   88 (220)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~---~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv   88 (220)
                      -||.+.+.++.+..+...   ..+-...++.|.|++|.+|+.+++.+.+ .+.+++....+..  ....++.        
T Consensus         5 ~~~~~~~~~~~~~~~~~~mm~~~~l~gk~~lVTGas~GIG~aia~~la~-~G~~V~~~~~~~~--~~~~~~~--------   73 (271)
T 3v2g_A            5 HHHSSGVDLGTENLYFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLAL-EGAAVALTYVNAA--ERAQAVV--------   73 (271)
T ss_dssp             ---------------CHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHHH--------
T ss_pred             ccccccccccccccchhhhccccCCCCCEEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCCH--HHHHHHH--------
Confidence            355555666655554442   2122234799999999999999999887 4888776544321  1111111        


Q ss_pred             cccCCHHHHHhccccCCCcc-EEEEccCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650           89 PVMSDLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus        89 ~v~~dl~~~l~~~~~~~~~D-VVIDfT~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                             +.+...  ..+.. +..|.+.++.+.+.+..+.+.  ++.++|-..|
T Consensus        74 -------~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  118 (271)
T 3v2g_A           74 -------SEIEQA--GGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAG  118 (271)
T ss_dssp             -------HHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             -------HHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence                   111100  01121 334677777776666655544  6777776554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.36  E-value=0.031  Score=48.82  Aligned_cols=93  Identities=17%  Similarity=0.192  Sum_probs=54.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--cCC-------CCCCccccCCHHHHHhccccCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--DME-------QPLEIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~--g~~-------~~~gv~v~~dl~~~l~~~~~~~  105 (220)
                      ++||+|+|+ |.||..++..+.+. +.++.. ++++   .....+.  |..       ....+..+++++++ .      
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~~-g~~V~~-~~r~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------   69 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLALA-GEAINV-LARG---ATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-G------   69 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHHT-TCCEEE-ECCH---HHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-C------
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHC-CCEEEE-EECh---HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-C------
Confidence            479999997 99999999988764 556554 4442   1111111  100       01123346788764 3      


Q ss_pred             CccEEEEccCchhHHHHHHHH---HHCCCcEEEeCCCC
Q 027650          106 ARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHI  140 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~a---l~~G~~vVigTtG~  140 (220)
                      ++|+||.++.+....+.+...   +..+..+|+-..|+
T Consensus        70 ~~D~Vilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           70 EQDVVIVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             CCSEEEECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             CCCEEEEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            799999666655444444332   23456666656674

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.34  E-value=0.024  Score=49.66  Aligned_cols=72  Identities=17%  Similarity=0.089  Sum_probs=42.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc---cCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      |||+|+|++|.+|..++..+...+-..=+.++|.+..-..+.++.....+..+..   ++|+++++.      ++|+||.
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~------~aDvVvi   74 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLK------GCDVVVI   74 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHT------TCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhC------CCCEEEE
Confidence            5999999889999999988876532233456776431011112221111112333   257888775      8999885


Q ss_pred             c
Q 027650          113 F  113 (220)
Q Consensus       113 f  113 (220)
                      .
T Consensus        75 ~   75 (314)
T 1mld_A           75 P   75 (314)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=95.33  E-value=0.04  Score=48.57  Aligned_cols=104  Identities=18%  Similarity=0.145  Sum_probs=59.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|. |+||+.+++.+.. -++++.+ +|+... ..+.       . .+ .+.++++++.      .+|+|+..
T Consensus       145 ~g~~vgIiG~-G~IG~~~A~~l~~-~G~~V~~-~d~~~~-~~~~-------~-~~-~~~~l~ell~------~aDvV~~~  205 (331)
T 1xdw_A          145 RNCTVGVVGL-GRIGRVAAQIFHG-MGATVIG-EDVFEI-KGIE-------D-YC-TQVSLDEVLE------KSDIITIH  205 (331)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSCC-CSCT-------T-TC-EECCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHH-CCCEEEE-ECCCcc-HHHH-------h-cc-ccCCHHHHHh------hCCEEEEe
Confidence            3468999996 9999999998876 4888764 665321 1110       1 12 2458999986      69999965


Q ss_pred             cCch-hH---H-HHHHHHHHCCCcEEEeCCC-CCHHHHHHHHHHhhhcCce
Q 027650          114 TDAS-TV---Y-DNVKQATAFGMRSVVYVPH-IQLETVSALSAFCDKASMG  158 (220)
Q Consensus       114 T~p~-~~---~-~~~~~al~~G~~vVigTtG-~~~e~~~~L~~aA~~~~v~  158 (220)
                      .+.. .+   . +.....++.|.-+|--.+| .-+  .+.|.++.++.++.
T Consensus       206 ~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd--~~aL~~aL~~g~i~  254 (331)
T 1xdw_A          206 APYIKENGAVVTRDFLKKMKDGAILVNCARGQLVD--TEAVIEAVESGKLG  254 (331)
T ss_dssp             CCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBC--HHHHHHHHHHTSEE
T ss_pred             cCCchHHHHHhCHHHHhhCCCCcEEEECCCccccc--HHHHHHHHHhCCce
Confidence            4321 11   1 2223334455444432233 222  24566666665554

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.33  E-value=0.023  Score=49.22  Aligned_cols=93  Identities=10%  Similarity=0.076  Sum_probs=52.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC---------CH-HHHHhccccC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS---------DL-TMVLGSISQS  104 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~---------dl-~~~l~~~~~~  104 (220)
                      +|||+|+|+ |.||..++..+.  .+.++.. +++..  ..+..+.    ..|+.+..         .. ++..      
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~--~g~~V~~-~~r~~--~~~~~l~----~~G~~~~~~~~~~~~~~~~~~~~~------   65 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS--LYHDVTV-VTRRQ--EQAAAIQ----SEGIRLYKGGEEFRADCSADTSIN------   65 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH--TTSEEEE-ECSCH--HHHHHHH----HHCEEEEETTEEEEECCEEESSCC------
T ss_pred             CCEEEEECC-CHHHHHHHHHHh--cCCceEE-EECCH--HHHHHHH----hCCceEecCCCeeccccccccccc------
Confidence            589999997 999999998887  5777765 44421  1111111    01211110         00 1122      


Q ss_pred             CCccEEEEccCchhHHHHHHHHHHCCC-cEEEeCCCCCHH
Q 027650          105 KARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVPHIQLE  143 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al~~G~-~vVigTtG~~~e  143 (220)
                      ..+|+||-++.+....+.+......+- .+|+-.-|+..+
T Consensus        66 ~~~D~vilavK~~~~~~~l~~l~~~~~~~ivs~~nGi~~~  105 (307)
T 3ego_A           66 SDFDLLVVTVKQHQLQSVFSSLERIGKTNILFLQNGMGHI  105 (307)
T ss_dssp             SCCSEEEECCCGGGHHHHHHHTTSSCCCEEEECCSSSHHH
T ss_pred             CCCCEEEEEeCHHHHHHHHHHhhcCCCCeEEEecCCccHH
Confidence            378999967777666665554432221 256555588754

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=95.30  E-value=0.059  Score=45.50  Aligned_cols=32  Identities=19%  Similarity=0.293  Sum_probs=27.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .||.|.|++|.+|+.+++.+.+ .+.+++++..
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~-~G~~V~~~~r   33 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLE-NGYSVNTTIR   33 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             CEEEEECChhHHHHHHHHHHHH-CCCEEEEEEe
Confidence            4799999999999999999886 4788887654

>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A

Probab=95.29  E-value=0.06  Score=48.91  Aligned_cols=94  Identities=15%  Similarity=0.157  Sum_probs=59.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEe-cCCCCcchhhhhcCC---CCC-------------Ccccc---CC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAID-SHSVGEDIGMVCDME---QPL-------------EIPVM---SD   93 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd-~~~~g~d~g~l~g~~---~~~-------------gv~v~---~d   93 (220)
                      |.||.|.|+||-+|..-.+.+.++|+ ++++++.. ..    +...+....   .+.             ++.++   +.
T Consensus        21 mk~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~----nv~~L~~q~~~f~p~~v~v~d~~~~~~~~~~v~~G~~~   96 (398)
T 2y1e_A           21 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGA----HLDTLLRQRAQTGVTNIAVADEHAAQRVGDIPYHGSDA   96 (398)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSS----CHHHHHHHHHHHCCCCEEESCHHHHHHHCCCSEESTTH
T ss_pred             ceEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCC----CHHHHHHHHHHcCCCEEEEcCHHHhhhcCCEEEecHHH
Confidence            67899999999999999999999987 99999987 32    222111100   000             11111   11


Q ss_pred             HHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEe
Q 027650           94 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (220)
Q Consensus        94 l~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (220)
                      +.++...    .++|+|+-.-.-..-..-...|+++|+.+-..
T Consensus        97 l~~~a~~----~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaLA  135 (398)
T 2y1e_A           97 ATRLVEQ----TEADVVLNALVGALGLRPTLAALKTGARLALA  135 (398)
T ss_dssp             HHHHHHH----SCCSEEEECCCSGGGHHHHHHHHHHTCEEEEC
T ss_pred             HHHHhcC----CCCCEEEEeCcCHHHHHHHHHHHHCCCceEEc
Confidence            3334332    36898884444444466667788888888654

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.27  E-value=0.18  Score=43.34  Aligned_cols=114  Identities=21%  Similarity=0.191  Sum_probs=51.0

Q ss_pred             ccccccccCCccccccCCCCCC--CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc
Q 027650           13 HHISQNVKAKRFISCSTNPPQS--NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV   90 (220)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~--~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v   90 (220)
                      ||+.-..+-+++..+....+..  ..+|.|.|++|.+|+.+++.+.+. +.+++.+ ++.. +.+...      .   .-
T Consensus         3 ~~~~~~~~~~~~~~~~p~~m~~l~gk~vlVTGas~GIG~aia~~la~~-G~~Vv~~-~r~~-~~~~~~------~---~~   70 (322)
T 3qlj_A            3 HHHHHHMGTLEAQTQGPGSMGVVDGRVVIVTGAGGGIGRAHALAFAAE-GARVVVN-DIGV-GLDGSP------A---SG   70 (322)
T ss_dssp             -------------------CCTTTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEE-CCCB-CTTSSB------T---CT
T ss_pred             cccccccceeeeeccCCchhcccCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEE-eCcc-cccccc------c---cc
Confidence            4444444445555555443322  246899999999999999998874 8888754 4320 000000      0   00


Q ss_pred             cCCHHHHHhccccCCCccEE---EEccCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650           91 MSDLTMVLGSISQSKARAVV---IDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus        91 ~~dl~~~l~~~~~~~~~DVV---IDfT~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      ...++++.+++. ....++.   .|.+.++...+.+..+.+.  ++.+||-..|
T Consensus        71 ~~~~~~~~~~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  123 (322)
T 3qlj_A           71 GSAAQSVVDEIT-AAGGEAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAG  123 (322)
T ss_dssp             TSHHHHHHHHHH-HTTCEEEEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             HHHHHHHHHHHH-hcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            011111111000 0122332   3667777776666666554  7888886655

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.26  E-value=0.046  Score=48.20  Aligned_cols=98  Identities=16%  Similarity=0.158  Sum_probs=55.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc-ccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP-VMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~-v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -+|.|+|++|.+|...+..+....+.+++++..++   .....+..++ ...+. ..+++.+.+.+. ....+|+|||++
T Consensus       173 ~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~---~~~~~~~~lG-ad~vi~~~~~~~~~v~~~-~~~g~Dvvid~~  247 (363)
T 4dvj_A          173 PAILIVGGAGGVGSIAVQIARQRTDLTVIATASRP---ETQEWVKSLG-AHHVIDHSKPLAAEVAAL-GLGAPAFVFSTT  247 (363)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSH---HHHHHHHHTT-CSEEECTTSCHHHHHHTT-CSCCEEEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCH---HHHHHHHHcC-CCEEEeCCCCHHHHHHHh-cCCCceEEEECC
Confidence            47999998899999999887765688888754321   1111111111 00111 112444444322 123799999988


Q ss_pred             CchhHHHHHHHHHHC-CCcEEEeCC
Q 027650          115 DASTVYDNVKQATAF-GMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~~~al~~-G~~vVigTt  138 (220)
                      ......+.+..+++. |.-+++|.+
T Consensus       248 g~~~~~~~~~~~l~~~G~iv~~g~~  272 (363)
T 4dvj_A          248 HTDKHAAEIADLIAPQGRFCLIDDP  272 (363)
T ss_dssp             CHHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             CchhhHHHHHHHhcCCCEEEEECCC
Confidence            765555555555554 444455544

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=95.24  E-value=0.08  Score=44.70  Aligned_cols=30  Identities=20%  Similarity=0.299  Sum_probs=25.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+
T Consensus        30 k~vlVTGas~gIG~aia~~L~~~-G~~V~~~   59 (276)
T 2b4q_A           30 RIALVTGGSRGIGQMIAQGLLEA-GARVFIC   59 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHC-CCEEEEE
Confidence            47999999999999999998874 7887654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=95.19  E-value=0.068  Score=46.73  Aligned_cols=62  Identities=21%  Similarity=0.150  Sum_probs=43.6

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -...+|+|+|. |+||+.+++.+... ++++.+ +|+.....          .  + .+.++++++.      .+|+|+.
T Consensus       142 l~g~~vgIIG~-G~IG~~~A~~l~~~-G~~V~~-~d~~~~~~----------~--~-~~~~l~ell~------~aDvV~l  199 (311)
T 2cuk_A          142 LQGLTLGLVGM-GRIGQAVAKRALAF-GMRVVY-HARTPKPL----------P--Y-PFLSLEELLK------EADVVSL  199 (311)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSSCCSS----------S--S-CBCCHHHHHH------HCSEEEE
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHC-CCEEEE-ECCCCccc----------c--c-ccCCHHHHHh------hCCEEEE
Confidence            34468999996 99999999998764 788764 66532110          0  1 2568888886      6999996


Q ss_pred             ccCc
Q 027650          113 FTDA  116 (220)
Q Consensus       113 fT~p  116 (220)
                      ..+.
T Consensus       200 ~~p~  203 (311)
T 2cuk_A          200 HTPL  203 (311)
T ss_dssp             CCCC
T ss_pred             eCCC
Confidence            5543

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=95.17  E-value=0.049  Score=51.03  Aligned_cols=68  Identities=16%  Similarity=0.144  Sum_probs=46.6

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -..++|+|+|. |+||+.+++.+... ++++++ +|+... .  ....    ..|+... ++++++.      .+|+|+-
T Consensus       140 l~g~~vgIIG~-G~IG~~vA~~l~~~-G~~V~~-~d~~~~-~--~~a~----~~g~~~~-~l~e~~~------~aDvV~l  202 (529)
T 1ygy_A          140 IFGKTVGVVGL-GRIGQLVAQRIAAF-GAYVVA-YDPYVS-P--ARAA----QLGIELL-SLDDLLA------RADFISV  202 (529)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTT-TCEEEE-ECTTSC-H--HHHH----HHTCEEC-CHHHHHH------HCSEEEE
T ss_pred             cCCCEEEEEee-CHHHHHHHHHHHhC-CCEEEE-ECCCCC-h--hHHH----hcCcEEc-CHHHHHh------cCCEEEE
Confidence            34469999996 99999999998764 888775 576421 1  1111    2244433 8889886      6999997


Q ss_pred             ccCch
Q 027650          113 FTDAS  117 (220)
Q Consensus       113 fT~p~  117 (220)
                      .+++.
T Consensus       203 ~~P~~  207 (529)
T 1ygy_A          203 HLPKT  207 (529)
T ss_dssp             CCCCS
T ss_pred             CCCCc
Confidence            66554

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.17  E-value=0.023  Score=54.35  Aligned_cols=97  Identities=11%  Similarity=0.121  Sum_probs=59.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCcccc---
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVM---   91 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----l~g~~~~~gv~v~---   91 (220)
                      .||.|+|+ |+.|..+++.+.. .|+.=+.++|.+.                .|+.-.+     +..+.....+..+   
T Consensus       328 ~kVLIVGa-GGLGs~va~~La~-aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~~  405 (598)
T 3vh1_A          328 TKVLLLGA-GTLGCYVSRALIA-WGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLS  405 (598)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHT-TTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHH-cCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEEecc
Confidence            58999998 9999999999876 4776677887431                1111100     1000000111111   


Q ss_pred             ------------------CCHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCCCC
Q 027650           92 ------------------SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHI  140 (220)
Q Consensus        92 ------------------~dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTtG~  140 (220)
                                        +++++++.      ++|+|||++..-.. ...-..|.++++++|.+.-|+
T Consensus       406 I~~pgh~i~~~~~~~l~~~~l~~li~------~~DvVvdatDn~~tR~lin~~c~~~~~plI~aa~G~  467 (598)
T 3vh1_A          406 IPMIGHKLVNEEAQHKDFDRLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGF  467 (598)
T ss_dssp             CCCSSCCCCSHHHHHHHHHHHHHHHH------HCSEEEECCSBGGGTHHHHHHHHHTTCEEEEEEECS
T ss_pred             ccccCcccccccccccCHHHHHHHHh------cCCEEEECCCCHHHHHHHHHHHHhcCCCEEEEEECC
Confidence                              12344554      68999999864444 556688899999998764454

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.16  E-value=0.039  Score=47.69  Aligned_cols=33  Identities=21%  Similarity=0.184  Sum_probs=25.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~   69 (220)
                      |+||+|+|+ |.||..++..+....- .+++ ++|+
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~-l~d~   34 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDA   34 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEcC
Confidence            579999996 9999999998876531 3554 5665

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=95.09  E-value=0.042  Score=50.96  Aligned_cols=138  Identities=9%  Similarity=0.085  Sum_probs=86.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcC---C-CC-----------CCccccCCH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDM---E-QP-----------LEIPVMSDL   94 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~---~-~~-----------~gv~v~~dl   94 (220)
                      ..||+|-|. |++|+..++.+.+. +.++|++.|+     +..|-|..++..+   . ..           .+.... +.
T Consensus       239 g~~VaVQG~-GnVG~~aa~~L~e~-GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v-~~  315 (456)
T 3r3j_A          239 NKKCLVSGS-GNVAQYLVEKLIEK-GAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF-EN  315 (456)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHH-TCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE-CS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe-CC
Confidence            368999996 99999999988764 8999999984     3456665554210   0 00           122222 23


Q ss_pred             HHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCCcH---H
Q 027650           95 TMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---G  168 (220)
Q Consensus        95 ~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNfS~---G  168 (220)
                      ++++.     .++||++=++..... .+++....+.+..+|+|-- + ++++..+.|    +++  .+++.|.+..   |
T Consensus       316 ~~i~~-----~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~~iL----~~r--GI~~~PD~~aNAGG  384 (456)
T 3r3j_A          316 QKPWN-----IPCDIAFPCATQNEINENDADLFIQNKCKMIVEGANMPTHIKALHKL----KQN--NIILCPSKAANAGG  384 (456)
T ss_dssp             CCGGG-----SCCSEEEECSCTTCBCHHHHHHHHHHTCCEEECCSSSCBCTTHHHHH----HTT--TCEEECHHHHTTHH
T ss_pred             ccccc-----cCccEEEeCCCccchhhHHHHHHHhcCCeEEEecCCCCCCHHHHHHH----HHC--CCEEeChHHhcCCc
Confidence            55565     489999988776555 6788888888999999865 2 455433222    233  4666676543   4


Q ss_pred             HHH-HHHHHHHhcCCCCCe
Q 027650          169 SIL-LQQAAISASFHYKNV  186 (220)
Q Consensus       169 v~l-l~~~a~~~~~~~~di  186 (220)
                      |.. -.+..+...+++|+-
T Consensus       385 V~vS~~E~~qn~~~~~w~~  403 (456)
T 3r3j_A          385 VAVSGLEMSQNSMRLQWTH  403 (456)
T ss_dssp             HHHHHHHHHHHHHTCCCCH
T ss_pred             eeeehHHHhhcccccCCCH
Confidence            432 133444555556654

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=95.08  E-value=0.13  Score=47.49  Aligned_cols=138  Identities=17%  Similarity=0.178  Sum_probs=84.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcC---C-CC----------CCccccCCHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDM---E-QP----------LEIPVMSDLT   95 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~---~-~~----------~gv~v~~dl~   95 (220)
                      ..||+|-|. |++|...++.+.+ .+.++|++.|+     +..|-|..++..+   . ..          .+... -+.+
T Consensus       235 Gk~vaVQG~-GnVG~~aa~~L~e-~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~-~~~~  311 (450)
T 4fcc_A          235 GMRVSVSGS-GNVAQYAIEKAME-FGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVY-LEGQ  311 (450)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHH-TTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEE-EETC
T ss_pred             CCEEEEeCC-ChHHHHHHHHHHh-cCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEE-ecCc
Confidence            468999996 9999999998876 59999999885     3445555433211   0 00          11111 1234


Q ss_pred             HHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCCcH---HH
Q 027650           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLSI---GS  169 (220)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNfS~---Gv  169 (220)
                      +++.     .++||++=+...... .+++......|+.+|++-- + .++|-.+.|.    ++  .|++.|.|..   ||
T Consensus       312 ~i~~-----~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA~~iL~----~r--GIl~~PD~~aNAGGV  380 (450)
T 4fcc_A          312 QPWS-----VPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATELFQ----QA--GVLFAPGKAANAGGV  380 (450)
T ss_dssp             CGGG-----SCCSEEEECSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHHH----HT--TCEEECHHHHTTHHH
T ss_pred             cccc-----CCccEEeeccccccccHHHHHHHHhcCceEEecCCCCCCCHHHHHHHH----HC--CCEEEChHHhcCccH
Confidence            4454     389999977665444 6888888899999999854 3 4555433332    33  5677777643   44


Q ss_pred             HH-HHHHHHHhcCCCCCe
Q 027650          170 IL-LQQAAISASFHYKNV  186 (220)
Q Consensus       170 ~l-l~~~a~~~~~~~~di  186 (220)
                      .. -.+..+...++.|+-
T Consensus       381 i~S~~E~~qn~~~~~w~~  398 (450)
T 4fcc_A          381 ATSGLEMAQNAARLGWKA  398 (450)
T ss_dssp             HHHHHHHHHHHHTCCCCH
T ss_pred             hhhHHHHhhhcccCCCCH
Confidence            32 133444444455543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.04  E-value=0.052  Score=46.15  Aligned_cols=30  Identities=33%  Similarity=0.498  Sum_probs=25.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      ..+.|.|++|.+|+.+++.+.+. +..++.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~~-G~~V~~~   58 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAAD-GVTVGAL   58 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEE
Confidence            46899999999999999998874 7887754

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=95.04  E-value=0.032  Score=48.00  Aligned_cols=121  Identities=12%  Similarity=0.098  Sum_probs=65.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .||.|+|+ |+||+.++..+... ++.=+-+++++.  ..+.+++.   .++.....++.  +      .++|+||..|+
T Consensus       120 ~~vlvlGa-Ggaarav~~~L~~~-G~~~i~v~nRt~--~ka~~la~---~~~~~~~~~~~--~------~~~DivInaTp  184 (271)
T 1npy_A          120 AKVIVHGS-GGMAKAVVAAFKNS-GFEKLKIYARNV--KTGQYLAA---LYGYAYINSLE--N------QQADILVNVTS  184 (271)
T ss_dssp             SCEEEECS-STTHHHHHHHHHHT-TCCCEEEECSCH--HHHHHHHH---HHTCEEESCCT--T------CCCSEEEECSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHHC-CCCEEEEEeCCH--HHHHHHHH---HcCCccchhhh--c------ccCCEEEECCC
Confidence            58999997 99999999998765 654344666642  22333331   11222222222  2      27999997775


Q ss_pred             chhHH-------HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          116 ASTVY-------DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       116 p~~~~-------~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      .....       ..-...+..+..++ -. -+++.+- .|.+.|++.|..++=    .+++ |+.+.+.+.
T Consensus       185 ~gm~~~~~~~~~~~~~~~l~~~~~v~-Dl-vY~P~~T-~ll~~A~~~G~~~i~----Gl~M-Lv~Qa~~~f  247 (271)
T 1npy_A          185 IGMKGGKEEMDLAFPKAFIDNASVAF-DV-VAMPVET-PFIRYAQARGKQTIS----GAAV-IVLQAVEQF  247 (271)
T ss_dssp             TTCTTSTTTTSCSSCHHHHHHCSEEE-EC-CCSSSSC-HHHHHHHHTTCEEEC----HHHH-HHHHHHHHH
T ss_pred             CCccCccccCCCCCCHHHcCCCCEEE-Ee-ecCCCCC-HHHHHHHHCCCEEEC----CHHH-HHHHHHHHH
Confidence            33211       11123455555443 21 2333332 577778888877542    4555 555555443

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=95.01  E-value=0.023  Score=48.09  Aligned_cols=114  Identities=11%  Similarity=0.038  Sum_probs=64.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVID  112 (220)
                      .+|||+|+|+ |.||..+++.+.+. ++++++...+.. -.+.. ++      -+|. +.+.+++..+.....++ +|+|
T Consensus         5 ~~mkI~IIG~-G~~G~sLA~~L~~~-G~~V~~~~~~~~-~~~aD-il------avP~-~ai~~vl~~l~~~l~~g~ivvd   73 (232)
T 3dfu_A            5 PRLRVGIFDD-GSSTVNMAEKLDSV-GHYVTVLHAPED-IRDFE-LV------VIDA-HGVEGYVEKLSAFARRGQMFLH   73 (232)
T ss_dssp             CCCEEEEECC-SCCCSCHHHHHHHT-TCEEEECSSGGG-GGGCS-EE------EECS-SCHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCcEEEEEee-CHHHHHHHHHHHHC-CCEEEEecCHHH-hccCC-EE------EEcH-HHHHHHHHHHHHhcCCCCEEEE
Confidence            4579999996 99999999998875 788876432211 01111 11      1121 24444443221112345 7788


Q ss_pred             cc--CchhHHHHHHHHHHCCCcEEEeCC---------CCCHHHHHHHHHHhhhcCceEEE
Q 027650          113 FT--DASTVYDNVKQATAFGMRSVVYVP---------HIQLETVSALSAFCDKASMGCLI  161 (220)
Q Consensus       113 fT--~p~~~~~~~~~al~~G~~vVigTt---------G~~~e~~~~L~~aA~~~~v~vvi  161 (220)
                      ++  .+...   +..+.+.|..+|-+-|         +.+++..+.++++.+.-|..+++
T Consensus        74 ~sgs~~~~v---l~~~~~~g~~fvg~HPm~g~~~~i~a~d~~a~~~l~~L~~~lG~~vv~  130 (232)
T 3dfu_A           74 TSLTHGITV---MDPLETSGGIVMSAHPIGQDRWVASALDELGETIVGLLVGELGGSIVE  130 (232)
T ss_dssp             CCSSCCGGG---GHHHHHTTCEEEEEEEEETTEEEEEESSHHHHHHHHHHHHHTTCEECC
T ss_pred             ECCcCHHHH---HHHHHhCCCcEEEeeeCCCCceeeeCCCHHHHHHHHHHHHHhCCEEEE
Confidence            65  33333   3334467775443222         22566788899998886655553

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=94.99  E-value=0.033  Score=54.13  Aligned_cols=33  Identities=15%  Similarity=0.165  Sum_probs=26.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ...||+|+|+ |.||..++..+... +++++ ++|+
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~a-G~~V~-l~D~  345 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASK-GTPIL-MKDI  345 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHT-TCCEE-EECS
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhC-CCEEE-EEEC
Confidence            4568999997 99999999988764 77766 5675

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=94.98  E-value=0.072  Score=47.44  Aligned_cols=62  Identities=23%  Similarity=0.226  Sum_probs=43.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|. |+||+.+++.+... ++++.+ +|+..  .+  ..     ..++ -+.++++++.      .+|+|+-..
T Consensus       148 gktvgIiGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~--~~--~~-----~~~~-~~~~l~ell~------~aDvV~l~~  208 (343)
T 2yq5_A          148 NLTVGLIGV-GHIGSAVAEIFSAM-GAKVIA-YDVAY--NP--EF-----EPFL-TYTDFDTVLK------EADIVSLHT  208 (343)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSSC--CG--GG-----TTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             CCeEEEEec-CHHHHHHHHHHhhC-CCEEEE-ECCCh--hh--hh-----hccc-cccCHHHHHh------cCCEEEEcC
Confidence            358999996 99999999998865 898775 56532  11  11     1122 2448999987      699988554


Q ss_pred             C
Q 027650          115 D  115 (220)
Q Consensus       115 ~  115 (220)
                      +
T Consensus       209 P  209 (343)
T 2yq5_A          209 P  209 (343)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=94.96  E-value=0.026  Score=49.95  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=26.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .++||+|+|+ |.||..++..+...+-+.=+.++|.
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~   42 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDI   42 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            3479999997 9999999998877654433346775

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.90  E-value=0.058  Score=46.76  Aligned_cols=122  Identities=16%  Similarity=0.111  Sum_probs=65.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..|+.|+|+ |++|+.++..+... ++.=+-+++++.  ..+.+++.   .++...++++++ +       ++|+||..|
T Consensus       122 ~k~vlvlGa-GGaaraia~~L~~~-G~~~v~v~nRt~--~ka~~La~---~~~~~~~~~l~~-l-------~~DivInaT  186 (282)
T 3fbt_A          122 NNICVVLGS-GGAARAVLQYLKDN-FAKDIYVVTRNP--EKTSEIYG---EFKVISYDELSN-L-------KGDVIINCT  186 (282)
T ss_dssp             TSEEEEECS-STTHHHHHHHHHHT-TCSEEEEEESCH--HHHHHHCT---TSEEEEHHHHTT-C-------CCSEEEECS
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHc-CCCEEEEEeCCH--HHHHHHHH---hcCcccHHHHHh-c-------cCCEEEECC
Confidence            358999997 99999999988874 763344566642  23334432   222111223322 1       589999776


Q ss_pred             CchhH-----HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          115 DASTV-----YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       115 ~p~~~-----~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      +....     ...-...++.+ .+|+- --+++.+ ..|.+.|++.|..++=    .+++ |+.|++.+.
T Consensus       187 p~Gm~~~~~~~pi~~~~l~~~-~~v~D-lvY~P~~-T~ll~~A~~~G~~~~~----Gl~M-Lv~Qa~~~f  248 (282)
T 3fbt_A          187 PKGMYPKEGESPVDKEVVAKF-SSAVD-LIYNPVE-TLFLKYARESGVKAVN----GLYM-LVSQAAASE  248 (282)
T ss_dssp             STTSTTSTTCCSSCHHHHTTC-SEEEE-SCCSSSS-CHHHHHHHHTTCEEEC----SHHH-HHHHHHHHH
T ss_pred             ccCccCCCccCCCCHHHcCCC-CEEEE-EeeCCCC-CHHHHHHHHCcCeEeC----cHHH-HHHHHHHHH
Confidence            43111     01122334444 34432 2334433 3467777887876543    5666 555555443

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=94.90  E-value=0.1  Score=46.82  Aligned_cols=50  Identities=24%  Similarity=0.257  Sum_probs=27.6

Q ss_pred             eeecccccccccCCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650            9 HCRMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |-.-||-|.|+--       -.|+-.+.||+|+|+ |..|+.+++.+... +++++.+-
T Consensus         5 ~~~~~~~~~~~~~-------~~~mm~~~~I~ilGg-G~lg~~l~~aa~~l-G~~v~~~d   54 (403)
T 3k5i_A            5 HHHHHHSSENLYF-------QGHMWNSRKVGVLGG-GQLGRMLVESANRL-NIQVNVLD   54 (403)
T ss_dssp             -----------------------CCSCCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEE
T ss_pred             cccccccccceeE-------eccCCCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEE
Confidence            3345666767642       123333569999996 99999999998774 89988764

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=94.87  E-value=0.092  Score=48.05  Aligned_cols=63  Identities=19%  Similarity=0.093  Sum_probs=44.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .-.+|+|+|. |+||+.+++.+... ++++.+ +|+... ..         ..++....++++++.      .+|+|+-.
T Consensus       155 ~gktvGIIGl-G~IG~~vA~~l~~~-G~~V~~-yd~~~~-~~---------~~~~~~~~sl~ell~------~aDvV~lh  215 (416)
T 3k5p_A          155 RGKTLGIVGY-GNIGSQVGNLAESL-GMTVRY-YDTSDK-LQ---------YGNVKPAASLDELLK------TSDVVSLH  215 (416)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECTTCC-CC---------BTTBEECSSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHC-CCEEEE-ECCcch-hc---------ccCcEecCCHHHHHh------hCCEEEEe
Confidence            3468999996 99999999988765 898875 665311 00         112334678999997      69998854


Q ss_pred             cC
Q 027650          114 TD  115 (220)
Q Consensus       114 T~  115 (220)
                      .+
T Consensus       216 vP  217 (416)
T 3k5p_A          216 VP  217 (416)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=94.86  E-value=0.02  Score=51.81  Aligned_cols=60  Identities=18%  Similarity=0.149  Sum_probs=41.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|. |+||+.+++.+... ++++.+ +|+..  ...    +    .+. .+.++++++.      .+|+|+-.+
T Consensus       116 g~tvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~--~~~----~----~g~-~~~~l~ell~------~aDvV~l~~  175 (380)
T 2o4c_A          116 ERTYGVVGA-GQVGGRLVEVLRGL-GWKVLV-CDPPR--QAR----E----PDG-EFVSLERLLA------EADVISLHT  175 (380)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECHHH--HHH----S----TTS-CCCCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEeC-CHHHHHHHHHHHHC-CCEEEE-EcCCh--hhh----c----cCc-ccCCHHHHHH------hCCEEEEec
Confidence            468999996 99999999998764 898865 66521  000    1    121 2468888886      689888554

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=94.84  E-value=0.023  Score=49.97  Aligned_cols=72  Identities=11%  Similarity=0.118  Sum_probs=44.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEecC----C---CCcchhhhhcC--CCCCCccccCCHHHHHh
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSH----S---VGEDIGMVCDM--EQPLEIPVMSDLTMVLG   99 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~------eLvg~vd~~----~---~g~d~g~l~g~--~~~~gv~v~~dl~~~l~   99 (220)
                      ++||+|+|++|.+|+.++..+....-+      +|+. +|.+    .   .| .+.++...  ....++..++++.+++.
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l-~Di~~~~~~~~~~g-~~~dl~~~~~~~~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQL-LEIPNEKAQKALQG-VMMEIDDCAFPLLAGMTAHADPMTAFK   82 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEE-ECCSCHHHHHHHHH-HHHHHHTTTCTTEEEEEEESSHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEE-EcCCCccccccchh-hHHHHhhhcccccCcEEEecCcHHHhC
Confidence            479999999999999999888765422      6665 6754    1   11 01112210  00113444678888885


Q ss_pred             ccccCCCccEEEEcc
Q 027650          100 SISQSKARAVVIDFT  114 (220)
Q Consensus       100 ~~~~~~~~DVVIDfT  114 (220)
                            ++|+||...
T Consensus        83 ------~aD~Vi~~a   91 (329)
T 1b8p_A           83 ------DADVALLVG   91 (329)
T ss_dssp             ------TCSEEEECC
T ss_pred             ------CCCEEEEeC
Confidence                  899988543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.82  E-value=0.16  Score=44.72  Aligned_cols=92  Identities=9%  Similarity=0.062  Sum_probs=53.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc---cc--CCHHHHHhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---VM--SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~---v~--~dl~~~l~~~~~~~~~DVV  110 (220)
                      -+|.|+|++|.+|...+..+.. -+.++++.++..    ....+.    .+|..   -+  .++.+.+.++. ..++|++
T Consensus       166 ~~VlV~Ga~G~vG~~a~qla~~-~Ga~Vi~~~~~~----~~~~~~----~lGa~~vi~~~~~~~~~~v~~~t-~g~~d~v  235 (371)
T 3gqv_A          166 VYVLVYGGSTATATVTMQMLRL-SGYIPIATCSPH----NFDLAK----SRGAEEVFDYRAPNLAQTIRTYT-KNNLRYA  235 (371)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEEECGG----GHHHHH----HTTCSEEEETTSTTHHHHHHHHT-TTCCCEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHH-CCCEEEEEeCHH----HHHHHH----HcCCcEEEECCCchHHHHHHHHc-cCCccEE
Confidence            4799999999999999987765 588998876321    121111    12221   12  23333332111 1258999


Q ss_pred             EEccCchhHHHHHHHHH-H-CCCcEEEeC
Q 027650          111 IDFTDASTVYDNVKQAT-A-FGMRSVVYV  137 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al-~-~G~~vVigT  137 (220)
                      +|++......+....++ + .|.-+.+|.
T Consensus       236 ~d~~g~~~~~~~~~~~l~~~~G~iv~~g~  264 (371)
T 3gqv_A          236 LDCITNVESTTFCFAAIGRAGGHYVSLNP  264 (371)
T ss_dssp             EESSCSHHHHHHHHHHSCTTCEEEEESSC
T ss_pred             EECCCchHHHHHHHHHhhcCCCEEEEEec
Confidence            99887655555555555 3 455555553

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=94.80  E-value=0.22  Score=40.57  Aligned_cols=83  Identities=18%  Similarity=0.218  Sum_probs=53.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCC---HHHHHhccccCCCccEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---LTMVLGSISQSKARAVV  110 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~d---l~~~l~~~~~~~~~DVV  110 (220)
                      .|.|+.|+|| |..|+.+++.+.+ .+++++|.+|.+...   ..      -.|+|++..   ++++..     ...|-+
T Consensus        11 ~~k~v~IiGA-Gg~g~~v~~~l~~-~~~~~vgfiDd~~~~---~~------~~g~~Vlg~~~~~~~~~~-----~~~~~v   74 (220)
T 4ea9_A           11 AIGGVVIIGG-GGHAKVVIESLRA-CGETVAAIVDADPTR---RA------VLGVPVVGDDLALPMLRE-----QGLSRL   74 (220)
T ss_dssp             CSSCEEEECC-SHHHHHHHHHHHH-TTCCEEEEECSCC------C------BTTBCEEESGGGHHHHHH-----TTCCEE
T ss_pred             CCCCEEEEcC-CHHHHHHHHHHHh-CCCEEEEEEeCCccc---Cc------CCCeeEECCHHHHHHhhc-----ccccEE
Confidence            4568999998 9999999999887 789999999964211   11      235677543   444444     234433


Q ss_pred             EEccCc--hhHHHHHHHHHHCCCcE
Q 027650          111 IDFTDA--STVYDNVKQATAFGMRS  133 (220)
Q Consensus       111 IDfT~p--~~~~~~~~~al~~G~~v  133 (220)
                      + .+.+  ..-.+....+.+.|..+
T Consensus        75 ~-iAIg~~~~R~~i~~~l~~~g~~~   98 (220)
T 4ea9_A           75 F-VAIGDNRLRQKLGRKARDHGFSL   98 (220)
T ss_dssp             E-ECCCCHHHHHHHHHHHHHTTCEE
T ss_pred             E-EecCCHHHHHHHHHHHHhcCCCc
Confidence            4 2433  33356667777777654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=94.80  E-value=0.05  Score=48.79  Aligned_cols=110  Identities=16%  Similarity=0.202  Sum_probs=67.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .-.+|+|.|+ |++|+.+++.+.+. +++++ ++|++..  . .++..   .+++.. .+.++++.     .++|+++-+
T Consensus       174 ~GktV~I~G~-GnVG~~~A~~l~~~-GakVv-vsD~~~~--~-~~~a~---~~ga~~-v~~~ell~-----~~~DIliP~  238 (355)
T 1c1d_A          174 DGLTVLVQGL-GAVGGSLASLAAEA-GAQLL-VADTDTE--R-VAHAV---ALGHTA-VALEDVLS-----TPCDVFAPC  238 (355)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSCHH--H-HHHHH---HTTCEE-CCGGGGGG-----CCCSEEEEC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHC-CCEEE-EEeCCcc--H-HHHHH---hcCCEE-eChHHhhc-----CccceecHh
Confidence            3468999996 99999999988765 89999 8886421  0 11211   223332 36677776     378998865


Q ss_pred             cCchhH-HHHHHHHHHCCCcEEEeCCC--CCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          114 TDASTV-YDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       114 T~p~~~-~~~~~~al~~G~~vVigTtG--~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      ...... .+++.   ..+..+|++...  +++++.  . ++-+++  .+++.|.+.
T Consensus       239 A~~~~I~~~~~~---~lk~~iVie~AN~p~t~~eA--~-~~L~~~--gIlv~Pd~~  286 (355)
T 1c1d_A          239 AMGGVITTEVAR---TLDCSVVAGAANNVIADEAA--S-DILHAR--GILYAPDFV  286 (355)
T ss_dssp             SCSCCBCHHHHH---HCCCSEECCSCTTCBCSHHH--H-HHHHHT--TCEECCHHH
T ss_pred             HHHhhcCHHHHh---hCCCCEEEECCCCCCCCHHH--H-HHHHhC--CEEEECCeE
Confidence            555443 34443   336789998873  343333  2 333443  456666543

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=94.76  E-value=0.11  Score=48.95  Aligned_cols=97  Identities=11%  Similarity=0.083  Sum_probs=58.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchh-----hhhcCCCCCCccc---c
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIG-----MVCDMEQPLEIPV---M   91 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g-----~l~g~~~~~gv~v---~   91 (220)
                      .||.|+|+ |..|..+++.+.. .|+.=+.++|.+.                .|+.-.     .+..+  ..++.+   .
T Consensus        33 ~~VlvvG~-GGlGseiak~La~-aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~l--Np~v~v~~~~  108 (531)
T 1tt5_A           33 AHVCLINA-TATGTEILKNLVL-PGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQEL--NSDVSGSFVE  108 (531)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHT-TTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTT--CTTSBCCEES
T ss_pred             CeEEEECc-CHHHHHHHHHHHH-cCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHh--CCCCeEEEeC
Confidence            48999998 9999999999875 5887777888531                121111     11111  112222   2


Q ss_pred             CCHHHHHhcc-ccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEe
Q 027650           92 SDLTMVLGSI-SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY  136 (220)
Q Consensus        92 ~dl~~~l~~~-~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVig  136 (220)
                      .++++.++.. .-..++|+|||++..... ......|.++++|+|.+
T Consensus       109 ~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~  155 (531)
T 1tt5_A          109 ESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLIC  155 (531)
T ss_dssp             SCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEE
Confidence            3444321100 000268999998865444 45567899999999976

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.74  E-value=0.092  Score=45.54  Aligned_cols=71  Identities=15%  Similarity=0.096  Sum_probs=42.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcch--hhhhc----CCCCCCccccCCHHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDI--GMVCD----MEQPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~--g~l~g----~~~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      .++||+|+|+ |.||..++..+... ++ + +.++|++..-.+.  .++..    ......+..++|+ +.+.      +
T Consensus         3 ~~~kI~VIGa-G~~G~~ia~~la~~-g~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~------~   72 (317)
T 2ewd_A            3 ERRKIAVIGS-GQIGGNIAYIVGKD-NLAD-VVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADIS------G   72 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHH-TCCE-EEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGT------T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCce-EEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhC------C
Confidence            4579999998 99999999988765 55 7 6677764210000  00100    0001234445777 5554      7


Q ss_pred             ccEEEEcc
Q 027650          107 RAVVIDFT  114 (220)
Q Consensus       107 ~DVVIDfT  114 (220)
                      +|+||...
T Consensus        73 aDiVi~av   80 (317)
T 2ewd_A           73 SDVVIITA   80 (317)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEeC
Confidence            99999654

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=94.72  E-value=0.052  Score=49.15  Aligned_cols=60  Identities=13%  Similarity=0.109  Sum_probs=40.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|. |+||+.+++.+... ++++.+ +|+..     .. .+     +...+.++++++.      .+|+|+-.+
T Consensus       119 gktvGIIGl-G~IG~~vA~~l~a~-G~~V~~-~d~~~-----~~-~~-----~~~~~~sl~ell~------~aDiV~l~~  178 (381)
T 3oet_A          119 DRTIGIVGV-GNVGSRLQTRLEAL-GIRTLL-CDPPR-----AA-RG-----DEGDFRTLDELVQ------EADVLTFHT  178 (381)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECHHH-----HH-TT-----CCSCBCCHHHHHH------HCSEEEECC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHC-CCEEEE-ECCCh-----HH-hc-----cCcccCCHHHHHh------hCCEEEEcC
Confidence            358999996 99999999998764 898875 46521     00 00     1123567888886      588877444

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=94.70  E-value=0.19  Score=42.97  Aligned_cols=84  Identities=23%  Similarity=0.338  Sum_probs=48.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+ ++..  ....++.               +.+...+ ..+.. +..|.+
T Consensus        42 k~vlVTGas~GIG~aia~~la~~-G~~V~~~-~r~~--~~~~~~~---------------~~l~~~~-~~~~~~~~~Dv~  101 (293)
T 3rih_A           42 RSVLVTGGTKGIGRGIATVFARA-GANVAVA-ARSP--RELSSVT---------------AELGELG-AGNVIGVRLDVS  101 (293)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-TCEEEEE-ESSG--GGGHHHH---------------HHHTTSS-SSCEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEE-ECCH--HHHHHHH---------------HHHHhhC-CCcEEEEEEeCC
Confidence            47899999999999999998874 7887754 4421  1111111               1111000 00122 334677


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++.+.+.+..+.+.  ++.+||-..|
T Consensus       102 d~~~v~~~~~~~~~~~g~iD~lvnnAg  128 (293)
T 3rih_A          102 DPGSCADAARTVVDAFGALDVVCANAG  128 (293)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777776666555443  6777776554

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.69  E-value=0.075  Score=48.92  Aligned_cols=145  Identities=14%  Similarity=0.214  Sum_probs=76.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CC---HHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SD---LTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~d---l~~~l~~~~~~~~  106 (220)
                      ..|||.|+|+ |++|+.+++.+.. .+.+++ ++|.+.  ..+..+.   +.+++.+ +   ++   |+++-.     .+
T Consensus         2 ~~M~iiI~G~-G~vG~~la~~L~~-~~~~v~-vId~d~--~~~~~~~---~~~~~~~i~Gd~~~~~~L~~Agi-----~~   68 (461)
T 4g65_A            2 NAMKIIILGA-GQVGGTLAENLVG-ENNDIT-IVDKDG--DRLRELQ---DKYDLRVVNGHASHPDVLHEAGA-----QD   68 (461)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHTCS-TTEEEE-EEESCH--HHHHHHH---HHSSCEEEESCTTCHHHHHHHTT-----TT
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHH-CCCCEE-EEECCH--HHHHHHH---HhcCcEEEEEcCCCHHHHHhcCC-----Cc
Confidence            4589999998 9999999998864 577876 677642  1222222   1233333 1   23   333322     37


Q ss_pred             ccEEEEccCchhHH-HHHHHHHH-CCCcEEEeCCCCCHHHHHHHHHHhh--hcCceEEEcCCCcHHHHHHHHHHHHhcC-
Q 027650          107 RAVVIDFTDASTVY-DNVKQATA-FGMRSVVYVPHIQLETVSALSAFCD--KASMGCLIAPTLSIGSILLQQAAISASF-  181 (220)
Q Consensus       107 ~DVVIDfT~p~~~~-~~~~~al~-~G~~vVigTtG~~~e~~~~L~~aA~--~~~v~vviapNfS~Gv~ll~~~a~~~~~-  181 (220)
                      +|++|=.|.-+..- -....|-+ .+.+-++.- -.+++-.+..+.+-.  .-|+-.+++|.....-.+.+.+...-+. 
T Consensus        69 ad~~ia~t~~De~Nl~~~~~Ak~~~~~~~~iar-~~~~~~~~~~~~l~~~~~~giD~iIsPe~~~a~~I~~~i~~p~~~~  147 (461)
T 4g65_A           69 ADMLVAVTNTDETNMAACQVAFTLFNTPNRIAR-IRSPQYLAQKEALFKSGAIPVDHLIAPEELVTSYIERLIQYPGALQ  147 (461)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHHCCSSEEEE-CCCHHHHTTHHHHTTTSSSCCSEEECHHHHHHHHHHHHHTSTTCSE
T ss_pred             CCEEEEEcCChHHHHHHHHHHHHhcCCccceeE-eccchhhhhhhhhhhcccCCcceeecHHHHHHHHHHHhccCCCeEE
Confidence            99988555544432 11222222 255444432 233433333333333  3567779988877666544433210000 


Q ss_pred             ----CCCCeEEEecc
Q 027650          182 ----HYKNVEIVESR  192 (220)
Q Consensus       182 ----~~~diEIiE~H  192 (220)
                          ....++++|..
T Consensus       148 ~~~f~~g~~~l~e~~  162 (461)
T 4g65_A          148 VVSFAEEKVSLVAVK  162 (461)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEEeccceEEEEEEE
Confidence                12467788774

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=94.66  E-value=0.043  Score=48.87  Aligned_cols=70  Identities=21%  Similarity=0.249  Sum_probs=43.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEecCC---CC--cchhhhhcCCCCCCccccCCHHHHHhccccCCCcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~~~---~g--~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      ++||+|+|++|.+|..++-.+....- -|| ..+|...   .|  .|+.... . ....+..++|+.+.++      ++|
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~ev-vLiDi~~~k~~g~a~DL~~~~-~-~~~~i~~t~d~~~al~------dAD   78 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNL-CLYDPFAVGLEGVAEEIRHCG-F-EGLNLTFTSDIKEALT------DAK   78 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCE-EEECSCHHHHHHHHHHHHHHC-C-TTCCCEEESCHHHHHT------TEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEE-EEEeCCchhHHHHHHhhhhCc-C-CCCceEEcCCHHHHhC------CCC
Confidence            57999999879999999877765432 255 4567531   11  1122111 1 1124455678888775      899


Q ss_pred             EEEEc
Q 027650          109 VVIDF  113 (220)
Q Consensus       109 VVIDf  113 (220)
                      +||..
T Consensus        79 vVvit   83 (343)
T 3fi9_A           79 YIVSS   83 (343)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            98854

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=94.65  E-value=0.23  Score=41.82  Aligned_cols=32  Identities=25%  Similarity=0.294  Sum_probs=26.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++. +++
T Consensus        45 k~vlITGasggIG~~la~~L~~-~G~~V~~-~~r   76 (285)
T 2c07_A           45 KVALVTGAGRGIGREIAKMLAK-SVSHVIC-ISR   76 (285)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-TSSEEEE-EES
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-cCCEEEE-EcC
Confidence            4799999999999999999876 4788877 554

>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A*

Probab=94.61  E-value=0.21  Score=46.27  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=30.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHh---cCC-cEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTK---ARG-MEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~---~~~-~eLvg~vd   68 (220)
                      .|.||.|.|+||-+|..-.+.+.+   +|+ ++++|+..
T Consensus        76 ~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaA  114 (488)
T 3au8_A           76 KPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYV  114 (488)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEE
T ss_pred             cceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEc
Confidence            466899999999999999999988   545 99999986

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=94.58  E-value=0.15  Score=48.67  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=28.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      +++|.|.|++|.+|+.+++.+.+. +.+++++..
T Consensus        11 ~~~ilVTGatG~IG~~l~~~L~~~-G~~V~~~~r   43 (699)
T 1z45_A           11 SKIVLVTGGAGYIGSHTVVELIEN-GYDCVVADN   43 (699)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEEC
Confidence            468999999999999999998874 788887653

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=94.56  E-value=0.31  Score=39.93  Aligned_cols=31  Identities=16%  Similarity=0.214  Sum_probs=26.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus        13 k~vlVTGasggiG~~~a~~l~~~-G~~V~~~~   43 (265)
T 2o23_A           13 LVAVITGGASGLGLATAERLVGQ-GASAVLLD   43 (265)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-CCEEEEEe
Confidence            57999999999999999999875 78877654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=94.47  E-value=0.44  Score=40.12  Aligned_cols=31  Identities=23%  Similarity=0.307  Sum_probs=26.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .++.|.|++|.+|+.+++.+.+ .+.+++.+.
T Consensus        30 k~~lVTGas~GIG~aia~~la~-~G~~V~~~~   60 (280)
T 4da9_A           30 PVAIVTGGRRGIGLGIARALAA-SGFDIAITG   60 (280)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCeEEEEe
Confidence            4689999999999999999886 488877654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=94.45  E-value=0.36  Score=40.72  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=25.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .++.|.|++|.+|+.+++.+.+. +.+++..
T Consensus        26 k~~lVTGas~GIG~~ia~~la~~-G~~V~~~   55 (281)
T 3v2h_A           26 KTAVITGSTSGIGLAIARTLAKA-GANIVLN   55 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEE
Confidence            46899999999999999998864 7777653

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=94.43  E-value=0.096  Score=41.54  Aligned_cols=31  Identities=26%  Similarity=0.322  Sum_probs=25.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|+|++|.+|+.+++.+... +.++++..
T Consensus        40 ~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~   70 (198)
T 1pqw_A           40 ERVLIHSATGGVGMAAVSIAKMI-GARIYTTA   70 (198)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHH-TCEEEEEE
T ss_pred             CEEEEeeCCChHHHHHHHHHHHc-CCEEEEEe
Confidence            47999998899999999987754 77877643

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=94.41  E-value=0.08  Score=43.53  Aligned_cols=35  Identities=26%  Similarity=0.395  Sum_probs=28.3

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+.+|.|.|++|.+|+.+++.+.+..+..++. +++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~-~~~   37 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVIN-IDI   37 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEE-EES
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEE-ecc
Confidence            45679999999999999999998766777665 444

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=94.40  E-value=0.09  Score=48.45  Aligned_cols=72  Identities=18%  Similarity=0.176  Sum_probs=42.4

Q ss_pred             CceEEEEcCCCHH-HHHHHHHHHhc-CCc--EEEEEEecCCCC-c------ch-hhhh-cCCCCCCccccCCHHHHHhcc
Q 027650           35 NIKVIINGAVKEI-GRAAVIAVTKA-RGM--EVAGAIDSHSVG-E------DI-GMVC-DMEQPLEIPVMSDLTMVLGSI  101 (220)
Q Consensus        35 ~ikV~V~Ga~GrM-G~~i~~~i~~~-~~~--eLvg~vd~~~~g-~------d~-g~l~-g~~~~~gv~v~~dl~~~l~~~  101 (220)
                      ++||+|+|+ |.. |..++..+... +++  .=+..+|.+. | .      +. ..+. ....+..+..++|+.+++.  
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~-~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~--   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPE-GKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALD--   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-GHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT--
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCC-ChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhC--
Confidence            479999998 666 88877767653 444  3244677632 1 1      01 1111 2211334555689988885  


Q ss_pred             ccCCCccEEEEcc
Q 027650          102 SQSKARAVVIDFT  114 (220)
Q Consensus       102 ~~~~~~DVVIDfT  114 (220)
                          ++|+||...
T Consensus        83 ----gAD~VVita   91 (450)
T 1s6y_A           83 ----GADFVTTQF   91 (450)
T ss_dssp             ----TCSEEEECC
T ss_pred             ----CCCEEEEcC
Confidence                899988443

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.40  E-value=0.03  Score=48.92  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=49.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc-CCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -+|.|+|++|.+|...+..+.. -+.+++++..+.. ..+...-.|..   .+.-+ .++.+.+.+...+..+|++||++
T Consensus       161 ~~VlV~Gasg~iG~~~~~~a~~-~Ga~Vi~~~~~~~-~~~~~~~~ga~---~v~~~~~~~~~~v~~~~~~~g~Dvvid~~  235 (342)
T 4eye_A          161 ETVLVLGAAGGIGTAAIQIAKG-MGAKVIAVVNRTA-ATEFVKSVGAD---IVLPLEEGWAKAVREATGGAGVDMVVDPI  235 (342)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCEEEEEESSGG-GHHHHHHHTCS---EEEESSTTHHHHHHHHTTTSCEEEEEESC
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHHHhcCCc---EEecCchhHHHHHHHHhCCCCceEEEECC
Confidence            3799999999999999988765 4888887654321 11111111210   11101 23333332211112689999987


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCC
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      ........+......|.-+++|..
T Consensus       236 g~~~~~~~~~~l~~~G~iv~~G~~  259 (342)
T 4eye_A          236 GGPAFDDAVRTLASEGRLLVVGFA  259 (342)
T ss_dssp             C--CHHHHHHTEEEEEEEEEC---
T ss_pred             chhHHHHHHHhhcCCCEEEEEEcc
Confidence            655433333333344555555543

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=94.39  E-value=0.11  Score=43.90  Aligned_cols=80  Identities=23%  Similarity=0.243  Sum_probs=47.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .++.|.|++|.+|+.+++.+.+. +.+++.+ +++.  ..+.++.               +.+.     .+.. +..|.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~~-G~~V~~~-~r~~--~~~~~~~---------------~~~~-----~~~~~~~~Dv~   84 (272)
T 4dyv_A           29 KIAIVTGAGSGVGRAVAVALAGA-GYGVALA-GRRL--DALQETA---------------AEIG-----DDALCVPTDVT   84 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-TCEEEEE-ESCH--HHHHHHH---------------HHHT-----SCCEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEE-ECCH--HHHHHHH---------------HHhC-----CCeEEEEecCC
Confidence            46788999999999999998874 7887654 4421  1111111               0111     1222 334677


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++.+.+.+..+.+.  ++.+||-..|
T Consensus        85 d~~~v~~~~~~~~~~~g~iD~lVnnAg  111 (272)
T 4dyv_A           85 DPDSVRALFTATVEKFGRVDVLFNNAG  111 (272)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777766666555444  6777765544

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=94.34  E-value=0.039  Score=48.64  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=27.5

Q ss_pred             CCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           31 PPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +...++||+|+|+ |.+|..++-.+...+-+.=+.++|.
T Consensus         5 ~~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di   42 (326)
T 2zqz_A            5 TDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDI   42 (326)
T ss_dssp             -CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECS
T ss_pred             ccCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeC
Confidence            3445589999998 9999999888876654433446775

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=94.28  E-value=0.44  Score=39.93  Aligned_cols=84  Identities=18%  Similarity=0.179  Sum_probs=49.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .++.|.|++|.+|+.+++.+.+. +..++...++..  ....++.               +.+...  ..+.. +..|.+
T Consensus        28 k~~lVTGas~GIG~aia~~la~~-G~~Vv~~~~~~~--~~~~~~~---------------~~~~~~--~~~~~~~~~Dl~   87 (267)
T 3u5t_A           28 KVAIVTGASRGIGAAIAARLASD-GFTVVINYAGKA--AAAEEVA---------------GKIEAA--GGKALTAQADVS   87 (267)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHH-TCEEEEEESSCS--HHHHHHH---------------HHHHHT--TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEcCCCH--HHHHHHH---------------HHHHhc--CCeEEEEEcCCC
Confidence            36899999999999999998874 888876544321  1111111               111100  01122 234777


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++...+.+..+.+.  ++.++|-..|
T Consensus        88 ~~~~v~~~~~~~~~~~g~iD~lvnnAG  114 (267)
T 3u5t_A           88 DPAAVRRLFATAEEAFGGVDVLVNNAG  114 (267)
T ss_dssp             CHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777776666655554  6777776554

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.27  E-value=0.17  Score=41.65  Aligned_cols=33  Identities=15%  Similarity=0.184  Sum_probs=27.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC--cEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG--MEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~--~eLvg~v   67 (220)
                      +.+|.|+|++|.+|+.+++.+.+...  .+|+.+.
T Consensus        21 ~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~   55 (267)
T 1sny_A           21 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTC   55 (267)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEE
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEe
Confidence            45899999999999999999987532  7877654

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=94.25  E-value=0.14  Score=41.53  Aligned_cols=31  Identities=29%  Similarity=0.386  Sum_probs=25.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      |.++.|.|++|.+|+.+++.+.+. +.+++..
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~-G~~V~~~   32 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARD-GYALALG   32 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEE
Confidence            457899999999999999999874 7886654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=94.22  E-value=0.034  Score=48.88  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=25.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      |||+|+|+ |.||..++..+...+-..=+.++|.+
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~   34 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIK   34 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCc
Confidence            69999997 99999999888766433233467753

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=94.22  E-value=0.041  Score=47.88  Aligned_cols=74  Identities=9%  Similarity=0.117  Sum_probs=44.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCc------EEEEEEecCCC-Ccc---hhhhhcC--CCCCCccccCCHHHHHhcc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGM------EVAGAIDSHSV-GED---IGMVCDM--EQPLEIPVMSDLTMVLGSI  101 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~------eLvg~vd~~~~-g~d---~g~l~g~--~~~~gv~v~~dl~~~l~~~  101 (220)
                      .+|||.|+|++|.+|+.++..+.....+      +|+. +|.... .+.   ..++...  ....++...+++.+++.  
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l-~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~--   79 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK--   79 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEE-ECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEE-EeCCCchhhccchhhhhhcccccccCCeEeccChHHHhC--
Confidence            4579999999999999999988774322      6665 664210 000   1112110  00012333467777775  


Q ss_pred             ccCCCccEEEEcc
Q 027650          102 SQSKARAVVIDFT  114 (220)
Q Consensus       102 ~~~~~~DVVIDfT  114 (220)
                          ++|+||.+.
T Consensus        80 ----~~D~Vih~A   88 (327)
T 1y7t_A           80 ----DADYALLVG   88 (327)
T ss_dssp             ----TCSEEEECC
T ss_pred             ----CCCEEEECC
Confidence                799999764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.20  E-value=0.31  Score=42.20  Aligned_cols=68  Identities=13%  Similarity=0.153  Sum_probs=41.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcC-CcEEEEEEecCCCCcchh----hhhcC----CCCCCccccCCHHHHHhccccCCC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKAR-GMEVAGAIDSHSVGEDIG----MVCDM----EQPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~-~~eLvg~vd~~~~g~d~g----~l~g~----~~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      |||+|+|+ |.||..++..+.... +.+++ ++|.+.  ..+.    ++...    .....+..++|+++ +.      +
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~-l~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~------~   69 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDVVE--GIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TA------N   69 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSS--SHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GT------T
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCCh--hHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HC------C
Confidence            59999998 999999999887653 56665 466532  1111    11100    00122444578876 54      7


Q ss_pred             ccEEEEcc
Q 027650          107 RAVVIDFT  114 (220)
Q Consensus       107 ~DVVIDfT  114 (220)
                      +|+||...
T Consensus        70 aDvViiav   77 (310)
T 1guz_A           70 SDIVIITA   77 (310)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEeC
Confidence            99999655

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=94.19  E-value=0.45  Score=39.60  Aligned_cols=34  Identities=21%  Similarity=0.337  Sum_probs=27.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +.+|.|.|++|.+|+.+++.+.+ .+.+++...++
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~-~G~~V~~~~~~   59 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAAR-QGWRVGVNYAA   59 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             CCEEEEECCCchHHHHHHHHHHH-CCCEEEEEcCC
Confidence            45699999999999999999887 48888765554

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=94.18  E-value=0.37  Score=38.92  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=28.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+|.|.|++|.+|+.+++.+.+ .+.+++.+.++
T Consensus         2 k~vlITGasggiG~~~a~~l~~-~G~~v~~~~~r   34 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAE-DGFALAIHYGQ   34 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHT-TTCEEEEEESS
T ss_pred             CEEEEeCCCchHHHHHHHHHHH-CCCEEEEEcCC
Confidence            4799999999999999999887 47888876554

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.18  E-value=0.086  Score=47.14  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=26.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ..||+|+|+ |++|+.+++.+... +++ |-++|+.
T Consensus       172 g~~V~ViGa-G~iG~~aa~~a~~~-Ga~-V~~~d~~  204 (384)
T 1l7d_A          172 PARVLVFGV-GVAGLQAIATAKRL-GAV-VMATDVR  204 (384)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCE-EEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCE-EEEEeCC
Confidence            458999997 99999999988765 677 5567764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.16  E-value=0.12  Score=43.23  Aligned_cols=108  Identities=10%  Similarity=0.011  Sum_probs=62.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ..||.|+|+ |.+|..-++.+.+. +.+++ +++++. ..++.++..   ..++.+ ...+++..-     .++|.||-.
T Consensus        31 gk~VLVVGg-G~va~~ka~~Ll~~-GA~Vt-Vvap~~-~~~l~~l~~---~~~i~~i~~~~~~~dL-----~~adLVIaA   98 (223)
T 3dfz_A           31 GRSVLVVGG-GTIATRRIKGFLQE-GAAIT-VVAPTV-SAEINEWEA---KGQLRVKRKKVGEEDL-----LNVFFIVVA   98 (223)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHGGG-CCCEE-EECSSC-CHHHHHHHH---TTSCEEECSCCCGGGS-----SSCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEE-EECCCC-CHHHHHHHH---cCCcEEEECCCCHhHh-----CCCCEEEEC
Confidence            358999997 99999999998875 56555 455542 233444432   122332 122222211     378988866


Q ss_pred             cCchhHHHHHHHHHHCCCcEE------------------------EeCCCCCHHHHHHHHHHhhh
Q 027650          114 TDASTVYDNVKQATAFGMRSV------------------------VYVPHIQLETVSALSAFCDK  154 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV------------------------igTtG~~~e~~~~L~~aA~~  154 (220)
                      |.-......+..+++.|++|-                        |.|.|-++--..+|++-.++
T Consensus        99 T~d~~~N~~I~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie~  163 (223)
T 3dfz_A           99 TNDQAVNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLSS  163 (223)
T ss_dssp             CCCTHHHHHHHHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence            654455455544455777652                        23446677766777665544

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.13  E-value=0.044  Score=47.81  Aligned_cols=97  Identities=14%  Similarity=0.077  Sum_probs=52.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      -+|.|+|++|.+|...+..+.. .+.++++. .++.. .+...-.|.  .. +.-..++.+.+.+......+|++||++.
T Consensus       152 ~~VlV~Ga~g~iG~~~~q~a~~-~Ga~Vi~~-~~~~~-~~~~~~lGa--~~-i~~~~~~~~~~~~~~~~~g~D~vid~~g  225 (343)
T 3gaz_A          152 QTVLIQGGGGGVGHVAIQIALA-RGARVFAT-ARGSD-LEYVRDLGA--TP-IDASREPEDYAAEHTAGQGFDLVYDTLG  225 (343)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE-ECHHH-HHHHHHHTS--EE-EETTSCHHHHHHHHHTTSCEEEEEESSC
T ss_pred             CEEEEecCCCHHHHHHHHHHHH-CCCEEEEE-eCHHH-HHHHHHcCC--CE-eccCCCHHHHHHHHhcCCCceEEEECCC
Confidence            3799999889999999987765 58898887 43110 111111121  11 2212334443321111136999999887


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCC
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      .......+..+...|.-+++|..
T Consensus       226 ~~~~~~~~~~l~~~G~iv~~g~~  248 (343)
T 3gaz_A          226 GPVLDASFSAVKRFGHVVSCLGW  248 (343)
T ss_dssp             THHHHHHHHHEEEEEEEEESCCC
T ss_pred             cHHHHHHHHHHhcCCeEEEEccc
Confidence            64433444433344554445544

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=94.12  E-value=0.034  Score=48.50  Aligned_cols=34  Identities=29%  Similarity=0.310  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |||+|+|++|.+|+.++..+...+-..-+.++|.
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di   34 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGR   34 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEEC
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcC
Confidence            5999999999999999998876543332445675

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=94.06  E-value=0.12  Score=48.06  Aligned_cols=95  Identities=13%  Similarity=0.132  Sum_probs=41.8

Q ss_pred             ccccccc--cCCccccccCCCCCCCceEEEEcCCCHH-HHHHHHHHHhc-CCc--EEEEEEecCCC---C-cchhh-h-h
Q 027650           13 HHISQNV--KAKRFISCSTNPPQSNIKVIINGAVKEI-GRAAVIAVTKA-RGM--EVAGAIDSHSV---G-EDIGM-V-C   80 (220)
Q Consensus        13 ~~~~~~~--~~~~~~~~~~~~~~~~ikV~V~Ga~GrM-G~~i~~~i~~~-~~~--eLvg~vd~~~~---g-~d~g~-l-~   80 (220)
                      ||-|+.+  -....-||++-.+ .++||+|+|+ |.. |..++..+... +++  .=+..+|.+..   + .+... + .
T Consensus         5 ~~~~~~~~~~~~~~~~~~~m~m-~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~   82 (472)
T 1u8x_X            5 HHHSSGVDLGTENLYFQSNMKK-KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIR   82 (472)
T ss_dssp             ---------------------C-CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred             cccccccccCccceeecccccc-CCCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence            3444433  2334456655111 1259999998 766 66676666554 344  22446775320   0 01111 1 1


Q ss_pred             cCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           81 DMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        81 g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      +...+..+..++|+++++.      ++|+||....
T Consensus        83 ~~~~~~~I~~t~D~~eal~------~AD~VViaag  111 (472)
T 1u8x_X           83 EKAPDIEFAATTDPEEAFT------DVDFVMAHIR  111 (472)
T ss_dssp             HHCTTSEEEEESCHHHHHS------SCSEEEECCC
T ss_pred             cCCCCCEEEEECCHHHHHc------CCCEEEEcCC
Confidence            1111334555789988885      8999884443

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.00  E-value=0.14  Score=44.84  Aligned_cols=71  Identities=21%  Similarity=0.221  Sum_probs=43.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CCCCCCccccCCHHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g--~d~g~l~g-~~~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      +++||+|+|+ |.||..++..+... ++ + +.++|.+..   |  .++..... ......+..++|+ +.+.      +
T Consensus        13 ~~~kI~ViGa-G~vG~~iA~~la~~-g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~------~   82 (328)
T 2hjr_A           13 MRKKISIIGA-GQIGSTIALLLGQK-DLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQ------N   82 (328)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHT-TCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGT------T
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHC------C
Confidence            3469999998 99999999877765 55 7 777886421   1  11111110 0002234455788 5554      7


Q ss_pred             ccEEEEcc
Q 027650          107 RAVVIDFT  114 (220)
Q Consensus       107 ~DVVIDfT  114 (220)
                      +|+||...
T Consensus        83 aD~VI~av   90 (328)
T 2hjr_A           83 SDVVIITA   90 (328)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEEcC
Confidence            99999654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=93.95  E-value=0.068  Score=49.97  Aligned_cols=85  Identities=14%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|+ |.||+.+++.+... +++++ ++|++.  .......    ..|+. +.++++++.      .+|+||++
T Consensus       273 ~GktV~IiG~-G~IG~~~A~~lka~-Ga~Vi-v~d~~~--~~~~~A~----~~Ga~-~~~l~e~l~------~aDvVi~a  336 (494)
T 3ce6_A          273 GGKKVLICGY-GDVGKGCAEAMKGQ-GARVS-VTEIDP--INALQAM----MEGFD-VVTVEEAIG------DADIVVTA  336 (494)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSCH--HHHHHHH----HTTCE-ECCHHHHGG------GCSEEEEC
T ss_pred             CcCEEEEEcc-CHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHH----HcCCE-EecHHHHHh------CCCEEEEC
Confidence            3458999997 99999999988764 77765 466531  1111111    22443 347788775      79999988


Q ss_pred             cCchhH-HHHHHHHHHCCCcEE
Q 027650          114 TDASTV-YDNVKQATAFGMRSV  134 (220)
Q Consensus       114 T~p~~~-~~~~~~al~~G~~vV  134 (220)
                      +..... .......++.|--+|
T Consensus       337 tgt~~~i~~~~l~~mk~ggilv  358 (494)
T 3ce6_A          337 TGNKDIIMLEHIKAMKDHAILG  358 (494)
T ss_dssp             SSSSCSBCHHHHHHSCTTCEEE
T ss_pred             CCCHHHHHHHHHHhcCCCcEEE
Confidence            754333 223334455554444

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=93.93  E-value=0.14  Score=42.00  Aligned_cols=34  Identities=21%  Similarity=0.162  Sum_probs=28.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+.+|.|.|++|.+|+.+++.+.+..+.+++.+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~   36 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTA   36 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEe
Confidence            3468999999999999999999874578877654

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=93.90  E-value=0.29  Score=40.04  Aligned_cols=32  Identities=22%  Similarity=0.216  Sum_probs=26.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      +.+|.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~   38 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRAR-NWWVASID   38 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhC-CCEEEEEe
Confidence            457999999999999999999864 78877654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=93.89  E-value=0.14  Score=41.99  Aligned_cols=30  Identities=30%  Similarity=0.460  Sum_probs=25.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+
T Consensus         4 k~vlVTGas~GIG~a~a~~l~~~-G~~V~~~   33 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLVER-GHQVSMM   33 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEE
Confidence            47999999999999999998864 7887654

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=93.88  E-value=0.34  Score=42.57  Aligned_cols=90  Identities=18%  Similarity=0.266  Sum_probs=52.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+|+.+........+   +.+       .+....+++-..   ..++. +..|.+
T Consensus        46 k~vlVTGas~GIG~aia~~La~~-Ga~Vvl~~r~~~~~~~---l~~-------~l~~~~~~~~~~---g~~~~~~~~Dv~  111 (346)
T 3kvo_A           46 CTVFITGASRGIGKAIALKAAKD-GANIVIAAKTAQPHPK---LLG-------TIYTAAEEIEAV---GGKALPCIVDVR  111 (346)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESCCSCCSS---SCC-------CHHHHHHHHHHT---TCEEEEEECCTT
T ss_pred             CEEEEeCCChHHHHHHHHHHHHC-CCEEEEEECChhhhhh---hHH-------HHHHHHHHHHhc---CCeEEEEEccCC
Confidence            46899999999999999998864 8887765433211111   000       000011111110   01122 335788


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++.+.+.+..+.+.  ++.+||-..|
T Consensus       112 d~~~v~~~~~~~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          112 DEQQISAAVEKAIKKFGGIDILVNNAS  138 (346)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888887777766665  7888886655

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=93.88  E-value=0.24  Score=43.82  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=26.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||.|+|+ |..|..+++.+.. .|+.=+.++|.
T Consensus        37 ~~VlivG~-GGlG~~ia~~La~-~Gvg~itlvD~   68 (346)
T 1y8q_A           37 SRVLLVGL-KGLGAEIAKNLIL-AGVKGLTMLDH   68 (346)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-HTCSEEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHH-cCCCEEEEEEC
Confidence            48999998 9999999999876 47766667875

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.87  E-value=0.3  Score=41.02  Aligned_cols=83  Identities=20%  Similarity=0.293  Sum_probs=48.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .++.|.|++|.+|+.+++.+.+. +.+++.. ++..  ....++.           ..+.+. .     .+.. +..|.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~~-G~~V~~~-~r~~--~~~~~~~-----------~~~~~~-~-----~~~~~~~~Dv~   87 (270)
T 3ftp_A           29 QVAIVTGASRGIGRAIALELARR-GAMVIGT-ATTE--AGAEGIG-----------AAFKQA-G-----LEGRGAVLNVN   87 (270)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT-TCEEEEE-ESSH--HHHHHHH-----------HHHHHH-T-----CCCEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEE-eCCH--HHHHHHH-----------HHHHhc-C-----CcEEEEEEeCC
Confidence            46889999999999999998874 8887754 4321  1111111           011111 0     1222 445777


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++.+.+.+..+.+.  ++.+||-..|
T Consensus        88 d~~~v~~~~~~~~~~~g~iD~lvnnAg  114 (270)
T 3ftp_A           88 DATAVDALVESTLKEFGALNVLVNNAG  114 (270)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777776666655443  6777776554

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.87  E-value=0.16  Score=44.32  Aligned_cols=114  Identities=15%  Similarity=0.084  Sum_probs=58.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |.||+|+|+ |..|+.++..+.+ -|++++.+ |++... ....++.  ...-++.+.+.+..+..   ..++|+|+-..
T Consensus         1 MK~I~ilGg-g~~g~~~~~~Ak~-~G~~vv~v-d~~~~~-~~~~~aD--~~~~~~~~~d~~~~~~~---~~~~D~v~~~~   71 (363)
T 4ffl_A            1 MKTICLVGG-KLQGFEAAYLSKK-AGMKVVLV-DKNPQA-LIRNYAD--EFYCFDVIKEPEKLLEL---SKRVDAVLPVN   71 (363)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEEE-ESCTTC-TTTTTSS--EEEECCTTTCHHHHHHH---HTSSSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEE-eCCCCC-hhHhhCC--EEEECCCCcCHHHHHHH---hcCCCEEEECC
Confidence            679999996 9999999987765 49999875 643211 1111111  01122335565555432   14799877322


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCCC--C-CHHHHHHHHHHhhhcCce
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVPH--I-QLETVSALSAFCDKASMG  158 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTtG--~-~~e~~~~L~~aA~~~~v~  158 (220)
                      ...........+.+.+... +|.+-  . ...+....+++.++.|+|
T Consensus        72 ~~~~~~~~~~~~~~~~~~~-~g~~~~a~~~~~dK~~~k~~l~~~gip  117 (363)
T 4ffl_A           72 ENLACIEFLNSIKEKFSCP-VLFDFEAYRISRDKKKSKDYFKSIGVP  117 (363)
T ss_dssp             CCHHHHHHHHHHGGGCSSC-BCCCHHHHHHHTSHHHHHHHHHHTTCC
T ss_pred             CChhHHHHHHHHHHHCCCc-cCCCHHHHHHhhCHHHHHHHHHhcCCC
Confidence            2222223333334443322 24331  1 012233456666666665

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.86  E-value=0.2  Score=40.49  Aligned_cols=31  Identities=23%  Similarity=0.306  Sum_probs=26.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCC--cEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARG--MEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~--~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+. +  .+++.+.
T Consensus         4 k~vlItGasggiG~~la~~l~~~-g~~~~V~~~~   36 (250)
T 1yo6_A            4 GSVVVTGANRGIGLGLVQQLVKD-KNIRHIIATA   36 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTC-TTCCEEEEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHhc-CCCcEEEEEe
Confidence            57999999999999999999875 5  7877654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.82  E-value=0.28  Score=39.89  Aligned_cols=31  Identities=29%  Similarity=0.293  Sum_probs=26.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus         4 k~vlITGas~gIG~~~a~~l~~~-G~~V~~~~   34 (236)
T 1ooe_A            4 GKVIVYGGKGALGSAILEFFKKN-GYTVLNID   34 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHT-TEEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe
Confidence            47999999999999999999874 88887654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.81  E-value=0.2  Score=43.54  Aligned_cols=98  Identities=18%  Similarity=0.176  Sum_probs=52.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc--cCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      -+|.|+|++|.+|..+++.+.. .+.++++...+..   ....+..++...-+..  ..++.+.+.+.... .+|++||+
T Consensus       171 ~~vlV~Ga~ggiG~~~~~~a~~-~Ga~V~~~~~~~~---~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~-~~D~vi~~  245 (347)
T 2hcy_A          171 HWVAISGAAGGLGSLAVQYAKA-MGYRVLGIDGGEG---KEELFRSIGGEVFIDFTKEKDIVGAVLKATDG-GAHGVINV  245 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEECSTT---HHHHHHHTTCCEEEETTTCSCHHHHHHHHHTS-CEEEEEEC
T ss_pred             CEEEEECCCchHHHHHHHHHHH-CCCcEEEEcCCHH---HHHHHHHcCCceEEecCccHhHHHHHHHHhCC-CCCEEEEC
Confidence            4799999999999999988775 4778776543221   1111111110000111  12444444321112 68999998


Q ss_pred             cCchhHHHHHHHHH-HCCCcEEEeCC
Q 027650          114 TDASTVYDNVKQAT-AFGMRSVVYVP  138 (220)
Q Consensus       114 T~p~~~~~~~~~al-~~G~~vVigTt  138 (220)
                      +......+.+..++ ..|.-+.+|.+
T Consensus       246 ~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          246 SVSEAAIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             SSCHHHHHHHTTSEEEEEEEEECCCC
T ss_pred             CCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence            76544444443333 34555556654

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=93.78  E-value=0.35  Score=39.89  Aligned_cols=34  Identities=9%  Similarity=0.135  Sum_probs=26.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .++.+|.|.|++|.+|+.+++.+.+. +.+|+.+.
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~-G~~V~~~~   53 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSK-SWNTISID   53 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEe
Confidence            34467999999999999999998874 78876544

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.76  E-value=0.32  Score=41.77  Aligned_cols=119  Identities=18%  Similarity=0.154  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..||.|+|+ |+||+.++..+... +.++. +++++.  ..+.++..    .++... +++++       .++|+||..|
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~-G~~v~-V~nRt~--~ka~~la~----~~~~~~-~~~~l-------~~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQ-GLQVS-VLNRSS--RGLDFFQR----LGCDCF-MEPPK-------SAFDLIINAT  180 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSSC--TTHHHHHH----HTCEEE-SSCCS-------SCCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEE-EEeCCH--HHHHHHHH----CCCeEe-cHHHh-------ccCCEEEEcc
Confidence            358999997 99999999998876 46654 566642  22333331    122221 22221       2689999776


Q ss_pred             Cch-----hH-HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          115 DAS-----TV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       115 ~p~-----~~-~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      +..     .. .+.+...++.+. +|+-.. +++ + ..|.+.|++.|.+++=    .+++ |+.|++.+.
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~~-~v~D~v-Y~P-~-T~ll~~A~~~G~~~~~----Gl~M-Lv~Qa~~~f  242 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEGK-LAYDLA-YGF-L-TPFLSLAKELKTPFQD----GKDM-LIYQAALSF  242 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHCS-EEEESC-CSS-C-CHHHHHHHHTTCCEEC----SHHH-HHHHHHHHH
T ss_pred             cCCCCCCCCCChHHHHhhCCCCC-EEEEeC-CCC-c-hHHHHHHHHCcCEEEC----CHHH-HHHHHHHHH
Confidence            522     11 222333455554 333221 223 2 2377778887876543    5666 555555433

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=93.75  E-value=0.29  Score=41.75  Aligned_cols=83  Identities=16%  Similarity=0.197  Sum_probs=50.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+|+.+ +++.  ....++.              +++-..   ..+.. +..|.+
T Consensus        32 k~vlVTGas~gIG~~la~~l~~~-G~~V~~~-~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dv~   90 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFARR-GARLVLS-DVDQ--PALEQAV--------------NGLRGQ---GFDAHGVVCDVR   90 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEE-ECCH--HHHHHHH--------------HHHHhc---CCceEEEEccCC
Confidence            47999999999999999998874 7887654 4321  1111111              111110   01222 345778


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++...+.+..+.+.  ++.+||-..|
T Consensus        91 d~~~v~~~~~~~~~~~g~id~lvnnAg  117 (301)
T 3tjr_A           91 HLDEMVRLADEAFRLLGGVDVVFSNAG  117 (301)
T ss_dssp             CHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            887777766666554  6888877665

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=93.75  E-value=0.1  Score=46.02  Aligned_cols=70  Identities=19%  Similarity=0.125  Sum_probs=40.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCC---C--cchhhhhc-CCCCCCccccCCHHHHHhccccCCCc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSV---G--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKAR  107 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~---g--~d~g~l~g-~~~~~gv~v~~dl~~~l~~~~~~~~~  107 (220)
                      ++||+|+|+ |.||..++..+... ++ +| .++|.+..   |  .|+..... ...+..+..++|+ +.+.      ++
T Consensus         7 ~~kI~viGa-G~vG~~~a~~l~~~-~~~~v-~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~------~a   76 (324)
T 3gvi_A            7 RNKIALIGS-GMIGGTLAHLAGLK-ELGDV-VLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIE------GA   76 (324)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCCEE-EEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGT------TC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCCeE-EEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHC------CC
Confidence            469999998 99999998877654 44 64 46775321   1  11211110 0002233345677 4554      79


Q ss_pred             cEEEEcc
Q 027650          108 AVVIDFT  114 (220)
Q Consensus       108 DVVIDfT  114 (220)
                      |+||...
T Consensus        77 DiVIiaa   83 (324)
T 3gvi_A           77 DVVIVTA   83 (324)
T ss_dssp             SEEEECC
T ss_pred             CEEEEcc
Confidence            9988543

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.69  E-value=0.078  Score=42.90  Aligned_cols=32  Identities=25%  Similarity=0.353  Sum_probs=26.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+..
T Consensus         3 k~vlVtGasggiG~~la~~l~~~-G~~V~~~~r   34 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKAR-GYRVVVLDL   34 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-TCEEEEEES
T ss_pred             CEEEEeCCCChHHHHHHHHHHHC-CCEEEEEcc
Confidence            57999999999999999998875 788776543

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.69  E-value=0.025  Score=50.06  Aligned_cols=33  Identities=27%  Similarity=0.261  Sum_probs=25.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      ++||+|+|+ |.||..++..+...+-+ +|+ ++|.
T Consensus         5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~-l~D~   38 (326)
T 3pqe_A            5 VNKVALIGA-GFVGSSYAFALINQGITDELV-VIDV   38 (326)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEE-EEec
Confidence            579999997 99999999988776543 554 5675

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=93.63  E-value=0.23  Score=41.62  Aligned_cols=55  Identities=27%  Similarity=0.239  Sum_probs=26.2

Q ss_pred             ecccccccccCCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           11 RMHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      +-||-.++-+....++...-.+-...+|.|.|++|.+|+.+++.+.+. +.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~m~~l~gk~vlVTGas~gIG~aia~~la~~-G~~V~~~   58 (266)
T 3uxy_A            4 HHHHSSGVDLGTENLYFQSMQGFEGKVALVTGAAGGIGGAVVTALRAA-GARVAVA   58 (266)
T ss_dssp             ----------------------CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEC
T ss_pred             cccCCCCCCCCCCCcchhhhhCCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEE
Confidence            334555555555444443322222357899999999999999998874 7887653

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.62  E-value=0.15  Score=44.03  Aligned_cols=98  Identities=10%  Similarity=0.036  Sum_probs=52.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      -+|.|+|++|.+|...+..+.. -+.++++...++   .....+..++ ...+..+  .++.+.+.+......+|++||+
T Consensus       150 ~~vlV~Ga~g~iG~~~~~~a~~-~Ga~Vi~~~~~~---~~~~~~~~~g-a~~~~~~~~~~~~~~~~~~~~~~g~D~vid~  224 (334)
T 3qwb_A          150 DYVLLFAAAGGVGLILNQLLKM-KGAHTIAVASTD---EKLKIAKEYG-AEYLINASKEDILRQVLKFTNGKGVDASFDS  224 (334)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHH-TTCEEEEEESSH---HHHHHHHHTT-CSEEEETTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEeCCH---HHHHHHHHcC-CcEEEeCCCchHHHHHHHHhCCCCceEEEEC
Confidence            4799999889999999987765 588887765421   1111111111 0011111  2333332211111368999998


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      +........+......|.-+.+|.+
T Consensus       225 ~g~~~~~~~~~~l~~~G~iv~~G~~  249 (334)
T 3qwb_A          225 VGKDTFEISLAALKRKGVFVSFGNA  249 (334)
T ss_dssp             CGGGGHHHHHHHEEEEEEEEECCCT
T ss_pred             CChHHHHHHHHHhccCCEEEEEcCC
Confidence            7764433444444445555566654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=93.58  E-value=0.39  Score=40.27  Aligned_cols=30  Identities=23%  Similarity=0.303  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++..
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~   52 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKE-GLRVFVC   52 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEE
Confidence            47999999999999999998874 7887754

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.57  E-value=0.11  Score=44.58  Aligned_cols=98  Identities=16%  Similarity=0.126  Sum_probs=50.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -+|.|+|++|.+|..+++.+... +.++++...++..-+.+.+ .|.  ..-+.. ..+..+.+.+......+|++||++
T Consensus       142 ~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~-~g~--~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~  217 (327)
T 1qor_A          142 EQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK-AGA--WQVINYREEDLVERLKEITGGKKVRVVYDSV  217 (327)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH-HTC--SEEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH-cCC--CEEEECCCccHHHHHHHHhCCCCceEEEECC
Confidence            47999998899999999988764 7787765432100011111 121  000111 112222221100113689999988


Q ss_pred             CchhHHHHHHHHH-HCCCcEEEeCC
Q 027650          115 DASTVYDNVKQAT-AFGMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~~~al-~~G~~vVigTt  138 (220)
                      .+.. .+.+..++ ..|.-+.+|.+
T Consensus       218 g~~~-~~~~~~~l~~~G~iv~~g~~  241 (327)
T 1qor_A          218 GRDT-WERSLDCLQRRGLMVSFGNS  241 (327)
T ss_dssp             CGGG-HHHHHHTEEEEEEEEECCCT
T ss_pred             chHH-HHHHHHHhcCCCEEEEEecC
Confidence            7444 44444444 44555556654

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=93.44  E-value=0.17  Score=44.77  Aligned_cols=62  Identities=21%  Similarity=0.218  Sum_probs=43.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|||+|. |++|+.+++.+... ++++.+ +|+.. .....       ..++ .+.++++++.      .+|+|+-..
T Consensus       141 g~tvGIiG~-G~IG~~va~~~~~f-g~~v~~-~d~~~-~~~~~-------~~~~-~~~~l~ell~------~sDivslh~  202 (334)
T 3kb6_A          141 RLTLGVIGT-GRIGSRVAMYGLAF-GMKVLC-YDVVK-REDLK-------EKGC-VYTSLDELLK------ESDVISLHV  202 (334)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSSC-CHHHH-------HTTC-EECCHHHHHH------HCSEEEECC
T ss_pred             CcEEEEECc-chHHHHHHHhhccc-Cceeee-cCCcc-chhhh-------hcCc-eecCHHHHHh------hCCEEEEcC
Confidence            358999996 99999999988764 899875 56531 11111       1122 3678999997      689888544

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.39  E-value=0.099  Score=45.54  Aligned_cols=91  Identities=13%  Similarity=0.099  Sum_probs=51.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh--hcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV--CDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l--~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      -+|.|+|++|.+|...+..+.. .+.+++++..++   .....+  +|..  .-+...+++.+.+.+. ....+|+|||+
T Consensus       152 ~~VlV~gg~G~vG~~a~qla~~-~Ga~Vi~~~~~~---~~~~~~~~lGa~--~vi~~~~~~~~~~~~~-~~~g~Dvv~d~  224 (346)
T 3fbg_A          152 KTLLIINGAGGVGSIATQIAKA-YGLRVITTASRN---ETIEWTKKMGAD--IVLNHKESLLNQFKTQ-GIELVDYVFCT  224 (346)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEEECCSH---HHHHHHHHHTCS--EEECTTSCHHHHHHHH-TCCCEEEEEES
T ss_pred             CEEEEEcCCCHHHHHHHHHHHH-cCCEEEEEeCCH---HHHHHHHhcCCc--EEEECCccHHHHHHHh-CCCCccEEEEC
Confidence            4799998789999999987764 578888764321   111111  1210  0011112333333221 12369999998


Q ss_pred             cCchhHHHHHHHHHHCCCcE
Q 027650          114 TDASTVYDNVKQATAFGMRS  133 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~v  133 (220)
                      +......+.+..+++.|=.+
T Consensus       225 ~g~~~~~~~~~~~l~~~G~i  244 (346)
T 3fbg_A          225 FNTDMYYDDMIQLVKPRGHI  244 (346)
T ss_dssp             SCHHHHHHHHHHHEEEEEEE
T ss_pred             CCchHHHHHHHHHhccCCEE
Confidence            87666655565555555444

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.37  E-value=0.29  Score=41.22  Aligned_cols=83  Identities=16%  Similarity=0.192  Sum_probs=48.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .++.|.|++|.+|+.+++.+.+. +.+|+.. +++.  ....++.              +++...   ..++. +..|.+
T Consensus        25 k~~lVTGas~GIG~aia~~la~~-G~~V~~~-~r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dv~   83 (279)
T 3sju_A           25 QTAFVTGVSSGIGLAVARTLAAR-GIAVYGC-ARDA--KNVSAAV--------------DGLRAA---GHDVDGSSCDVT   83 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCEEEEE-ESCH--HHHHHHH--------------HHHHTT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEE-eCCH--HHHHHHH--------------HHHHhc---CCcEEEEECCCC
Confidence            46999999999999999998874 8887654 4421  1111110              111110   01222 234677


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++.+.+.+..+.+.  ++.+||-..|
T Consensus        84 d~~~v~~~~~~~~~~~g~id~lv~nAg  110 (279)
T 3sju_A           84 STDEVHAAVAAAVERFGPIGILVNSAG  110 (279)
T ss_dssp             CHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence            777776666655544  6777776554

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=93.33  E-value=0.18  Score=41.62  Aligned_cols=85  Identities=13%  Similarity=0.167  Sum_probs=50.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (220)
                      |.+|.|+|++|.+|+.+++.+.+. +.+++.+..+..  .....+               .+.+...  ..+.. +..|.
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~-G~~v~~~~~~~~--~~~~~~---------------~~~~~~~--~~~~~~~~~Dl   66 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAK-GYSVTVTYHSDT--TAMETM---------------KETYKDV--EERLQFVQADV   66 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCH--HHHHHH---------------HHHTGGG--GGGEEEEECCT
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHC-CCEEEEEcCCCh--HHHHHH---------------HHHHHhc--CCceEEEEecC
Confidence            457999999999999999999874 888886654321  001111               1111100  00222 23467


Q ss_pred             cCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      +.++...+.+..+.+.  ++.+|+-..|
T Consensus        67 ~~~~~v~~~~~~~~~~~g~id~lv~~Ag   94 (264)
T 3i4f_A           67 TKKEDLHKIVEEAMSHFGKIDFLINNAG   94 (264)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            7777776666655554  6778776555

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=93.33  E-value=0.21  Score=41.69  Aligned_cols=32  Identities=28%  Similarity=0.338  Sum_probs=26.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      +.+|.|.|++|.+|+.+++.+.+ .+.+++...
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~-~G~~V~~~~   36 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVA-AGDTVIGTA   36 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CcEEEEECCCChHHHHHHHHHHH-CCCEEEEEe
Confidence            45799999999999999999886 478887654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=93.30  E-value=0.83  Score=37.59  Aligned_cols=31  Identities=26%  Similarity=0.352  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .++.|.|++|.+|+.+++.+.+. +.+++...
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~   38 (257)
T 3tpc_A            8 RVFIVTGASSGLGAAVTRMLAQE-GATVLGLD   38 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEe
Confidence            46899999999999999998874 88876543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=93.30  E-value=0.29  Score=40.55  Aligned_cols=32  Identities=38%  Similarity=0.462  Sum_probs=26.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.. ++
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~-~r   40 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVRE-GATVAIA-DI   40 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT-TCEEEEE-ES
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCEEEEE-eC
Confidence            46999999999999999998874 8887654 44

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.23  E-value=0.16  Score=41.57  Aligned_cols=119  Identities=11%  Similarity=0.090  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV  110 (220)
                      ..+|.|+|+ |++|+.+++.+.+. +.  +-++|++.  ..+..+.     .++.+ +   ++.+.+...  .-.++|+|
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~-g~--v~vid~~~--~~~~~~~-----~~~~~i~gd~~~~~~l~~a--~i~~ad~v   75 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGS-EV--FVLAEDEN--VRKKVLR-----SGANFVHGDPTRVSDLEKA--NVRGARAV   75 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTS-EE--EEEESCGG--GHHHHHH-----TTCEEEESCTTCHHHHHHT--TCTTCSEE
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhC-Ce--EEEEECCH--HHHHHHh-----cCCeEEEcCCCCHHHHHhc--CcchhcEE
Confidence            458999997 99999999988654 55  44666532  1122221     12222 1   233332110  01378988


Q ss_pred             EEccCchhH-HHHHHHHHHCCC--cEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650          111 IDFTDASTV-YDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G~--~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                      |-.+..+.. ......+.+.+.  ++|.-.  .+++..+.++    +.|+-.++.|....+-.+.
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~~~iia~~--~~~~~~~~l~----~~G~~~vi~p~~~~a~~l~  134 (234)
T 2aef_A           76 IVDLESDSETIHCILGIRKIDESVRIIAEA--ERYENIEQLR----MAGADQVISPFVISGRLMS  134 (234)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCSSSEEEEEC--SSGGGHHHHH----HHTCSEEECHHHHHHHHHH
T ss_pred             EEcCCCcHHHHHHHHHHHHHCCCCeEEEEE--CCHhHHHHHH----HCCCCEEECHHHHHHHHHH
Confidence            855554433 233344555554  444432  3444444454    3567788888877776553

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=93.23  E-value=0.029  Score=48.42  Aligned_cols=88  Identities=14%  Similarity=0.090  Sum_probs=50.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCC---HHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD---LTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~d---l~~~l~~~~~~~~~DVVID  112 (220)
                      -+|+|+|++|.+|...+..+.. -+.++++...+..  .+...-+|.   ..+.-+.+   +.+.+      ..+|++||
T Consensus       154 ~~vlV~Ga~G~vG~~a~q~a~~-~Ga~vi~~~~~~~--~~~~~~lGa---~~~i~~~~~~~~~~~~------~g~D~v~d  221 (321)
T 3tqh_A          154 DVVLIHAGAGGVGHLAIQLAKQ-KGTTVITTASKRN--HAFLKALGA---EQCINYHEEDFLLAIS------TPVDAVID  221 (321)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCEEEEEECHHH--HHHHHHHTC---SEEEETTTSCHHHHCC------SCEEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHH-cCCEEEEEeccch--HHHHHHcCC---CEEEeCCCcchhhhhc------cCCCEEEE
Confidence            4799999789999999987765 4889887754321  111111221   11111222   33333      37999999


Q ss_pred             ccCchhHHHHHHHHHHC-CCcEEEe
Q 027650          113 FTDASTVYDNVKQATAF-GMRSVVY  136 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~-G~~vVig  136 (220)
                      ++..... +....+++. |.-+.+|
T Consensus       222 ~~g~~~~-~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          222 LVGGDVG-IQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             SSCHHHH-HHHGGGEEEEEEEEECC
T ss_pred             CCCcHHH-HHHHHhccCCCEEEEeC
Confidence            9876655 444444444 4444444

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.20  E-value=0.15  Score=43.93  Aligned_cols=98  Identities=19%  Similarity=0.171  Sum_probs=50.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -+|.|+|++|.+|..+++.+... +.++++...+...-+.+.+ .|.  ..-+.. ..+..+.+.+......+|++||++
T Consensus       147 ~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~-~g~--~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~  222 (333)
T 1wly_A          147 DYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARK-LGC--HHTINYSTQDFAEVVREITGGKGVDVVYDSI  222 (333)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH-HTC--SEEEETTTSCHHHHHHHHHTTCCEEEEEECS
T ss_pred             CEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-cCC--CEEEECCCHHHHHHHHHHhCCCCCeEEEECC
Confidence            47999999999999999988764 7787765432100011111 121  000111 112222221100013689999987


Q ss_pred             CchhHHHHHHHHHH-CCCcEEEeCC
Q 027650          115 DASTVYDNVKQATA-FGMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~~~al~-~G~~vVigTt  138 (220)
                      ... ..+.+..+++ .|.-+.+|..
T Consensus       223 g~~-~~~~~~~~l~~~G~iv~~g~~  246 (333)
T 1wly_A          223 GKD-TLQKSLDCLRPRGMCAAYGHA  246 (333)
T ss_dssp             CTT-THHHHHHTEEEEEEEEECCCT
T ss_pred             cHH-HHHHHHHhhccCCEEEEEecC
Confidence            663 3444444444 4555556644

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=93.18  E-value=0.3  Score=41.20  Aligned_cols=80  Identities=25%  Similarity=0.234  Sum_probs=48.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.. ++..  ..+.++.               +.+.     .+.. +..|.+
T Consensus        28 k~vlVTGas~GIG~aia~~l~~~-G~~V~~~-~r~~--~~~~~~~---------------~~~~-----~~~~~~~~Dv~   83 (277)
T 4dqx_A           28 RVCIVTGGGSGIGRATAELFAKN-GAYVVVA-DVNE--DAAVRVA---------------NEIG-----SKAFGVRVDVS   83 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ESSH--HHHHHHH---------------HHHC-----TTEEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCEEEEE-eCCH--HHHHHHH---------------HHhC-----CceEEEEecCC
Confidence            47899999999999999998874 7887654 4321  1111111               0011     1222 345677


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++...+.+..+.+.  ++.+||-..|
T Consensus        84 d~~~v~~~~~~~~~~~g~iD~lv~nAg  110 (277)
T 4dqx_A           84 SAKDAESMVEKTTAKWGRVDVLVNNAG  110 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777776666555444  6777776554

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=93.17  E-value=1.1  Score=37.33  Aligned_cols=31  Identities=32%  Similarity=0.361  Sum_probs=26.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~   39 (264)
T 2dtx_A            9 KVVIVTGASMGIGRAIAERFVDE-GSKVIDLS   39 (264)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEe
Confidence            47999999999999999999874 78877643

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.14  E-value=0.14  Score=45.06  Aligned_cols=93  Identities=17%  Similarity=0.192  Sum_probs=54.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCccc---c----CCHHHHHhccccCCCc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPV---M----SDLTMVLGSISQSKAR  107 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~l~g~~~~~gv~v---~----~dl~~~l~~~~~~~~~  107 (220)
                      -+|+|+|+ |.+|...+..+... +. ++++ +++..  .....+.    .+|+..   +    .++.+.+.++.. ..+
T Consensus       195 ~~VlV~Ga-G~vG~~a~q~a~~~-Ga~~Vi~-~~~~~--~~~~~a~----~lGa~~vi~~~~~~~~~~~~i~~~~~-gg~  264 (378)
T 3uko_A          195 SNVAIFGL-GTVGLAVAEGAKTA-GASRIIG-IDIDS--KKYETAK----KFGVNEFVNPKDHDKPIQEVIVDLTD-GGV  264 (378)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHH-TCSCEEE-ECSCT--THHHHHH----TTTCCEEECGGGCSSCHHHHHHHHTT-SCB
T ss_pred             CEEEEECC-CHHHHHHHHHHHHc-CCCeEEE-EcCCH--HHHHHHH----HcCCcEEEccccCchhHHHHHHHhcC-CCC
Confidence            47999998 99999999877654 76 5665 44321  1111111    223221   1    234443332211 269


Q ss_pred             cEEEEccCchhHHHHHHHHHHC--CCcEEEeCC
Q 027650          108 AVVIDFTDASTVYDNVKQATAF--GMRSVVYVP  138 (220)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~--G~~vVigTt  138 (220)
                      |+|||++......+.+..+++.  |.-+++|.+
T Consensus       265 D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          265 DYSFECIGNVSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             SEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CEEEECCCCHHHHHHHHHHhhccCCEEEEEccc
Confidence            9999998765555666556664  666677764

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=93.12  E-value=0.26  Score=40.76  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=26.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+
T Consensus        17 k~vlITGasggiG~~~a~~l~~~-G~~V~~~   46 (278)
T 2bgk_A           17 KVAIITGGAGGIGETTAKLFVRY-GAKVVIA   46 (278)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEE
Confidence            57999999999999999998874 7887765

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.11  E-value=0.36  Score=42.94  Aligned_cols=97  Identities=14%  Similarity=0.158  Sum_probs=52.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -+|+|+|+ |.+|...+..+.. -+. ++++ +++.....+...-+|.   ..+.-+  .++.+.+.++..+..+|+|||
T Consensus       215 ~~VlV~Ga-G~vG~~aiqlak~-~Ga~~Vi~-~~~~~~~~~~~~~lGa---~~vi~~~~~~~~~~i~~~t~g~g~D~vid  288 (404)
T 3ip1_A          215 DNVVILGG-GPIGLAAVAILKH-AGASKVIL-SEPSEVRRNLAKELGA---DHVIDPTKENFVEAVLDYTNGLGAKLFLE  288 (404)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCSEEEE-ECSCHHHHHHHHHHTC---SEEECTTTSCHHHHHHHHTTTCCCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-cCCCEEEE-ECCCHHHHHHHHHcCC---CEEEcCCCCCHHHHHHHHhCCCCCCEEEE
Confidence            37999998 9999999987765 477 6665 4432100111111121   011111  233333322111236999999


Q ss_pred             ccCch-hHHHHHHHHH-----HCCCcEEEeCC
Q 027650          113 FTDAS-TVYDNVKQAT-----AFGMRSVVYVP  138 (220)
Q Consensus       113 fT~p~-~~~~~~~~al-----~~G~~vVigTt  138 (220)
                      ++... ...+.+..++     ..|.-+++|.+
T Consensus       289 ~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~  320 (404)
T 3ip1_A          289 ATGVPQLVWPQIEEVIWRARGINATVAIVARA  320 (404)
T ss_dssp             CSSCHHHHHHHHHHHHHHCSCCCCEEEECSCC
T ss_pred             CCCCcHHHHHHHHHHHHhccCCCcEEEEeCCC
Confidence            88655 4555555555     44555556655

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.10  E-value=0.14  Score=46.30  Aligned_cols=40  Identities=13%  Similarity=0.209  Sum_probs=29.9

Q ss_pred             cCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           28 STNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        28 ~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ++.+.....||+|+|+ |+||...++.+... +.++. ++|+.
T Consensus       177 ~~~~~v~~~kV~ViG~-G~iG~~aa~~a~~l-Ga~V~-v~D~~  216 (381)
T 3p2y_A          177 TAAGTVKPASALVLGV-GVAGLQALATAKRL-GAKTT-GYDVR  216 (381)
T ss_dssp             CSSCEECCCEEEEESC-SHHHHHHHHHHHHH-TCEEE-EECSS
T ss_pred             cccCCcCCCEEEEECc-hHHHHHHHHHHHHC-CCEEE-EEeCC
Confidence            3444444569999997 99999999988765 77754 67764

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.07  E-value=0.15  Score=44.78  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=25.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (220)
                      ++||+|+|+ |.||..++..+... ++ +|+ ++|.+
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~-~~~~v~-l~Di~   38 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIK-QLGDVV-LFDIA   38 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCCEEE-EECSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCceEE-EEeCC
Confidence            479999997 99999999887764 44 654 57753

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.06  E-value=0.13  Score=46.59  Aligned_cols=32  Identities=34%  Similarity=0.376  Sum_probs=25.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      .||+|+|+ |.+|..+++.+... +++ |-++|+.
T Consensus       173 ~~V~ViGa-G~iG~~aa~~a~~~-Ga~-V~v~D~~  204 (401)
T 1x13_A          173 AKVMVIGA-GVAGLAAIGAANSL-GAI-VRAFDTR  204 (401)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCE-EEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCE-EEEEcCC
Confidence            58999997 99999999988765 676 4457753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.04  E-value=0.04  Score=49.34  Aligned_cols=67  Identities=16%  Similarity=0.159  Sum_probs=41.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc------cCCHHHHHhccccCCCcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV------MSDLTMVLGSISQSKARA  108 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v------~~dl~~~l~~~~~~~~~D  108 (220)
                      ..+|+|+|+ |+||+.+++.+... +++++ ++|+..  .....+..   ..|..+      ..++++++.      .+|
T Consensus       168 g~~V~ViG~-G~iG~~~a~~a~~~-Ga~V~-~~d~~~--~~l~~~~~---~~g~~~~~~~~~~~~l~~~l~------~aD  233 (377)
T 2vhw_A          168 PADVVVIGA-GTAGYNAARIANGM-GATVT-VLDINI--DKLRQLDA---EFCGRIHTRYSSAYELEGAVK------RAD  233 (377)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EEESCH--HHHHHHHH---HTTTSSEEEECCHHHHHHHHH------HCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCEEE-EEeCCH--HHHHHHHH---hcCCeeEeccCCHHHHHHHHc------CCC
Confidence            468999998 99999999988764 77755 566531  11111111   012111      335666665      689


Q ss_pred             EEEEccC
Q 027650          109 VVIDFTD  115 (220)
Q Consensus       109 VVIDfT~  115 (220)
                      +||+++.
T Consensus       234 vVi~~~~  240 (377)
T 2vhw_A          234 LVIGAVL  240 (377)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.02  E-value=0.51  Score=39.52  Aligned_cols=84  Identities=15%  Similarity=0.128  Sum_probs=49.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .++.|.|++|.+|+.+++.+.+. +.+++.+ ++..  ....+..           ..+.+...     .++. +..|.+
T Consensus        28 k~~lVTGas~GIG~aia~~l~~~-G~~V~~~-~r~~--~~~~~~~-----------~~~~~~~~-----~~~~~~~~Dv~   87 (277)
T 4fc7_A           28 KVAFITGGGSGIGFRIAEIFMRH-GCHTVIA-SRSL--PRVLTAA-----------RKLAGATG-----RRCLPLSMDVR   87 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT-TCEEEEE-ESCH--HHHHHHH-----------HHHHHHHS-----SCEEEEECCTT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHC-CCEEEEE-eCCH--HHHHHHH-----------HHHHHhcC-----CcEEEEEcCCC
Confidence            47999999999999999998864 7887754 4321  1111110           01111111     1222 334777


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++.+.+.+..+.+.  ++.+||-..|
T Consensus        88 ~~~~v~~~~~~~~~~~g~id~lv~nAg  114 (277)
T 4fc7_A           88 APPAVMAAVDQALKEFGRIDILINCAA  114 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            777776666655554  6788876554

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=93.01  E-value=0.5  Score=38.37  Aligned_cols=31  Identities=29%  Similarity=0.364  Sum_probs=26.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus         8 k~vlVTGasggiG~~~a~~l~~~-G~~V~~~~   38 (258)
T 3afn_B            8 KRVLITGSSQGIGLATARLFARA-GAKVGLHG   38 (258)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHC-CCEEEEEC
Confidence            57999999999999999999874 88877654

>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}

Probab=92.99  E-value=0.41  Score=43.10  Aligned_cols=91  Identities=12%  Similarity=0.088  Sum_probs=46.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHhccccCCCccEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +++||+|+|+ |.-...+++.+.+..+++.+.+.. ...+.  ..+..   ..-+++ +.|.+++++.. +..++|+|+-
T Consensus        23 m~~~IlIlG~-g~r~~al~~~~a~~~g~~~v~~~~-~~~~~--~~~~~---~~~~~~~~~d~~~l~~~~-~~~~~d~V~~   94 (452)
T 2qk4_A           23 MAARVLIIGS-GGREHTLAWKLAQSHHVKQVLVAP-GNAGT--ACSEK---ISNTAISISDHTALAQFC-KEKKIEFVVV   94 (452)
T ss_dssp             CSEEEEEEEC-SHHHHHHHHHHTTCTTEEEEEEEE-CCGGG--SBSSS---EEECCCCSSCHHHHHHHH-HHHTCCEEEE
T ss_pred             cCcEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEC-CChhh--hhhcc---ccccccCCCCHHHHHHHH-HHcCCCEEEE
Confidence            3589999997 632234556666677888665543 22111  11110   001111 45666654311 1137898773


Q ss_pred             ccCchhH--HHHHHHHHHCCCcEE
Q 027650          113 FTDASTV--YDNVKQATAFGMRSV  134 (220)
Q Consensus       113 fT~p~~~--~~~~~~al~~G~~vV  134 (220)
                       . ++..  ...+..+.+.|++++
T Consensus        95 -~-~E~~~~~~~~~~l~~~gi~~~  116 (452)
T 2qk4_A           95 -G-PEAPLAAGIVGNLRSAGVQCF  116 (452)
T ss_dssp             -C-SSHHHHTTHHHHHHHTTCCEE
T ss_pred             -C-CcHHHHHHHHHHHHhcCCcEe
Confidence             2 3332  244455557788876

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=92.95  E-value=0.49  Score=39.54  Aligned_cols=80  Identities=21%  Similarity=0.231  Sum_probs=48.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .++.|.|++|.+|+.+++.+.+. +.+++. ++++.  ....++.               +.+.     .+.. +..|.+
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~-G~~V~~-~~r~~--~~~~~~~---------------~~~~-----~~~~~~~~Dv~   67 (271)
T 3tzq_B           12 KVAIITGACGGIGLETSRVLARA-GARVVL-ADLPE--TDLAGAA---------------ASVG-----RGAVHHVVDLT   67 (271)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEE-EECTT--SCHHHHH---------------HHHC-----TTCEEEECCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCEEEE-EcCCH--HHHHHHH---------------HHhC-----CCeEEEECCCC
Confidence            47999999999999999998874 788765 44431  1111111               0011     1222 345677


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++...+.+..+.+.  ++.+++-..|
T Consensus        68 ~~~~v~~~~~~~~~~~g~id~lv~nAg   94 (271)
T 3tzq_B           68 NEVSVRALIDFTIDTFGRLDIVDNNAA   94 (271)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            777766666555444  6777765544

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=92.93  E-value=0.95  Score=37.04  Aligned_cols=30  Identities=33%  Similarity=0.516  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .++.|.|++|.+|+.+++.+.+. +.+++.+
T Consensus         6 k~vlVTGas~giG~~ia~~l~~~-G~~V~~~   35 (245)
T 1uls_A            6 KAVLITGAAHGIGRATLELFAKE-GARLVAC   35 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEE
Confidence            47999999999999999998864 8887764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=92.90  E-value=0.051  Score=49.41  Aligned_cols=32  Identities=22%  Similarity=0.192  Sum_probs=26.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      -+|+|+|++|.+|...+..+.. -+.+++++..
T Consensus       230 ~~VlV~GasG~vG~~avqlak~-~Ga~vi~~~~  261 (456)
T 3krt_A          230 DNVLIWGASGGLGSYATQFALA-GGANPICVVS  261 (456)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-cCCeEEEEEC
Confidence            3799999999999999887765 5889888764

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=92.88  E-value=0.084  Score=46.23  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      -+|.|+|++|.+|...+..+.. -+.++++++++.
T Consensus       169 ~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~  202 (357)
T 1zsy_A          169 DSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDR  202 (357)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCC
T ss_pred             CEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCc
Confidence            3799999999999999987765 488888888753

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=92.86  E-value=0.39  Score=42.04  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=26.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |.||+|+|+ |..|+.+++.+.+ -+++++.+ |+
T Consensus         1 M~~Ililg~-g~~g~~~~~a~~~-~G~~v~~~-~~   32 (380)
T 3ax6_A            1 MKKIGIIGG-GQLGKMMTLEAKK-MGFYVIVL-DP   32 (380)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHH-TTCEEEEE-ES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHH-CCCEEEEE-eC
Confidence            568999996 9999999999876 47887764 44

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=92.84  E-value=0.64  Score=37.70  Aligned_cols=31  Identities=26%  Similarity=0.225  Sum_probs=26.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus         7 k~vlVtGasggiG~~~a~~l~~~-G~~V~~~~   37 (251)
T 1zk4_A            7 KVAIITGGTLGIGLAIATKFVEE-GAKVMITG   37 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             cEEEEeCCCChHHHHHHHHHHHC-CCEEEEEe
Confidence            47999999999999999999874 78877643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=92.78  E-value=0.24  Score=42.67  Aligned_cols=97  Identities=18%  Similarity=0.193  Sum_probs=51.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      -+|.|+|++|.+|..+++.+.. .+.++++...+.   .....+..++...-+...  .++.+.+.+... ..+|++||+
T Consensus       147 ~~vlV~Ga~ggiG~~~~~~~~~-~G~~V~~~~~~~---~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~-~~~d~vi~~  221 (333)
T 1v3u_A          147 ETVLVSAAAGAVGSVVGQIAKL-KGCKVVGAAGSD---EKIAYLKQIGFDAAFNYKTVNSLEEALKKASP-DGYDCYFDN  221 (333)
T ss_dssp             CEEEEESTTBHHHHHHHHHHHH-TTCEEEEEESSH---HHHHHHHHTTCSEEEETTSCSCHHHHHHHHCT-TCEEEEEES
T ss_pred             CEEEEecCCCcHHHHHHHHHHH-CCCEEEEEeCCH---HHHHHHHhcCCcEEEecCCHHHHHHHHHHHhC-CCCeEEEEC
Confidence            4799999999999999988775 477877654221   111111111100001111  344444432111 268999998


Q ss_pred             cCchhHHHHHHHHH-HCCCcEEEeCC
Q 027650          114 TDASTVYDNVKQAT-AFGMRSVVYVP  138 (220)
Q Consensus       114 T~p~~~~~~~~~al-~~G~~vVigTt  138 (220)
                      +.... .+....++ ..|.-+++|..
T Consensus       222 ~g~~~-~~~~~~~l~~~G~~v~~g~~  246 (333)
T 1v3u_A          222 VGGEF-LNTVLSQMKDFGKIAICGAI  246 (333)
T ss_dssp             SCHHH-HHHHHTTEEEEEEEEECCCC
T ss_pred             CChHH-HHHHHHHHhcCCEEEEEecc
Confidence            76543 33333333 34555556654

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=92.75  E-value=0.39  Score=39.41  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=25.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+|.|+|++|.+|+.+++.+.+. +.+.|.++++
T Consensus         6 k~vlVtGas~gIG~~~a~~l~~~-G~~~v~~~~r   38 (254)
T 1sby_A            6 KNVIFVAALGGIGLDTSRELVKR-NLKNFVILDR   38 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-CCSEEEEEES
T ss_pred             cEEEEECCCChHHHHHHHHHHHC-CCcEEEEEec
Confidence            47999999999999999999874 6763334454

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=92.75  E-value=0.39  Score=40.19  Aligned_cols=31  Identities=26%  Similarity=0.277  Sum_probs=25.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .+|.|.|++|.+|+.+++.+.+. +.+++.+.
T Consensus        17 k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~   47 (266)
T 3p19_A           17 KLVVITGASSGIGEAIARRFSEE-GHPLLLLA   47 (266)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT-TCCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEE
Confidence            46899999999999999998864 77777543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d1diha1	162	c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate re	7e-11
d1yl7a1	135	c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate re	6e-07
d1vm6a3	128	c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate red	1e-04
d1yl7a2	109	d.81.1.3 (A:106-214) Dihydrodipicolinate reductase	1e-04

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

 Score = 56.4 bits (135), Expect = 7e-11
 Identities = 23/163 (14%), Positives = 52/163 (31%), Gaps = 11/163 (6%)

Query: 33  QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS 92
            +NI+V I GA   +GR  + A     G+++  A++            ++    +  V  
Sbjct: 2   DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV 61

Query: 93  DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 152
             ++     +      V IDFT      +++      G   V+           A+    
Sbjct: 62  QSSL----DAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAA 117

Query: 153 DKASMGCLIAPTLSIGS-----ILLQQAAISASFHYKNVEIVE 190
               +  + A   S+             +   S  +   ++++
Sbjct: 118 AD--IAIVFAANFSMTFANGAVRSALWLSGKESGLFDMRDVLD 158

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.1 bits (106), Expect = 6e-07
 Identities = 27/159 (16%), Positives = 52/159 (32%), Gaps = 32/159 (20%)

Query: 37  KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
           +V + GA  ++G   V AV  A  + ++  +D+      +                    
Sbjct: 1   RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLL-------------------- 40

Query: 97  VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA- 155
                       VVIDFT    V  N++     G+ +VV       E    + ++     
Sbjct: 41  ------TDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKP 94

Query: 156 SMGCLIAPTLSIG----SILLQQAAISASFHYKNVEIVE 190
           +   LIAP  +       + +++ A         +E + 
Sbjct: 95  NTSVLIAPNFTSFVPGVLLAVRRIAERPGLTV-GLEPLL 132

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} Length = 128

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 21/154 (13%), Positives = 46/154 (29%), Gaps = 31/154 (20%)

Query: 37  KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTM 96
           K  I G    +G+  +  V   +G E+   +D                            
Sbjct: 2   KYGIVGYSGRMGQE-IQKVFSEKGHELVLKVD---------------------------- 32

Query: 97  VLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS 156
            +  + +  +  VVIDF+    +   V     +    V+    ++ E +  L     +  
Sbjct: 33  -VNGVEELDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVP 91

Query: 157 -MGCLIAPTLSIGSILLQQAAISASFHYKNVEIV 189
            +        +IG++   +  +       + E V
Sbjct: 92  VVQAYSRTVFAIGALKAAEFLVGKDPGMYSFEEV 125

>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 109

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 166 SIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTT 204
           +IG++L    A  A+  + + E++E     +    S T 
Sbjct: 1   AIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTA 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	100.0
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	100.0
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	99.96
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	99.73
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	99.73
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	99.72
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	99.7
d1vm6a2	86	Dihydrodipicolinate reductase {Thermotoga maritima	99.67
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	99.67
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	99.66
d1yl7a2	109	Dihydrodipicolinate reductase {Mycobacterium tuber	99.64
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	99.64
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	99.62
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	99.6
d1diha2	110	Dihydrodipicolinate reductase {Escherichia coli [T	99.54
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.21
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.12
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	99.1
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	99.09
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.99
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	98.93
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.91
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	98.88
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.87
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.81
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	98.65
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	98.6
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.6
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	98.56
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.55
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	98.55
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.49
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.42
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	98.42
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	98.41
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.37
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	98.35
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	98.34
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.3
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.27
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	98.22
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.2
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.08
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	98.07
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.0
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.99
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	97.95
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.94
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.92
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.9
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.88
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.81
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.75
d1gr0a1	243	Myo-inositol 1-phosphate synthase {Mycobacterium t	97.74
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.73
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.71
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.6
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.59
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.56
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.54
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.5
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.49
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.39
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.31
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.29
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.14
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.13
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.13
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.08
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	97.08
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	97.06
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.98
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.93
d1vjpa1	275	Hypothetical protein TM1419 {Thermotoga maritima [	96.93
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	96.85
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.84
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.75
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.74
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.73
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.64
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.64
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.62
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	96.57
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.57
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	96.55
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.51
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.45
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	96.42
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	96.39
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.33
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.31
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.3
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.19
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	96.02
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.9
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	95.89
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.85
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.84
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.84
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.8
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.8
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.79
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.78
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.74
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	95.73
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	95.72
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	95.68
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.67
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.63
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	95.63
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	95.61
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.56
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.48
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.42
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.4
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.4
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.38
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.36
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.34
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.33
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.32
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.3
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.29
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.18
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.15
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.14
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	95.12
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	95.05
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.04
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.98
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.96
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.96
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.95
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.91
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.86
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.75
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.75
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	94.74
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.73
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	94.73
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.71
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.47
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.44
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.42
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	94.38
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.33
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	94.22
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	94.18
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	94.17
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.14
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.13
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.05
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.93
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.92
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.84
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.78
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.75
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.52
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.46
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.44
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.33
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.28
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.1
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.05
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	93.02
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.99
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	92.89
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	92.83
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.8
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	92.77
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	92.74
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.7
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.66
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	92.56
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.46
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.43
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	92.24
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	92.24
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.07
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.02
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	91.94
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	91.92
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	91.89
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	91.8
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.67
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.64
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.61
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.5
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	91.47
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	91.4
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.33
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	91.33
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.18
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.07
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.01
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.81
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.67
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.65
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	90.64
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	90.49
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.47
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	90.43
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	90.31
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	90.23
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	90.14
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	89.99
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	89.87
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	89.85
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	89.84
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	89.84
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	89.84
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	89.83
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	89.77
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	89.74
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	89.64
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	89.49
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.48
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	89.48
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	89.38
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.37
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	89.16
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	89.13
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	89.11
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	88.92
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	88.69
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	88.59
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	88.58
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.41
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	88.3
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	88.29
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	88.2
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	88.13
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	87.97
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	87.89
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	87.83
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	87.61
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	87.28
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	86.97
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	86.82
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	86.76
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	85.97
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	85.78
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	85.24
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	85.16
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	84.94
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	84.92
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	84.91
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	84.7
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	84.62
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	84.14
d2csua2	161	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	82.52
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	82.39
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	82.2
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	81.25
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	80.96
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	80.44
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	80.37
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	80.1

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-40  Score=269.51  Aligned_cols=152  Identities=19%  Similarity=0.231  Sum_probs=133.4

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec---CCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV  109 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~---~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV  109 (220)
                      .++|||+|+||+||||+++++.+.+.++++|++++++   ...|+|++++.+.. +.++++++++++++.      .+||
T Consensus         2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~-~~~~~~~~~~~~~~~------~~DV   74 (162)
T d1diha1           2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG-KTGVTVQSSLDAVKD------DFDV   74 (162)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS-CCSCCEESCSTTTTT------SCSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccc-cCCceeeccHHHHhc------ccce
Confidence            4679999999999999999999999999999999995   45789999998875 678999999998875      7999


Q ss_pred             EEEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH-HHH----HHHHHhcCCCC
Q 027650          110 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI-LLQ----QAAISASFHYK  184 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~-ll~----~~a~~~~~~~~  184 (220)
                      +||||+|+++.++++.|+++|+|+|+|||||+++|.+.|++++++  +|++++||||+|++ ++.    ++++.+. .+|
T Consensus        75 iIDFs~p~~~~~~~~~a~~~~~~~ViGTTG~~~~~~~~i~~~a~~--ipi~~apN~SlGi~~~~~~~~~~~~~~~~-~~f  151 (162)
T d1diha1          75 FIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD--IAIVFAANFSMTFANGAVRSALWLSGKES-GLF  151 (162)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHTTT--SCEEECSCCCHHHHHHHHHHHHHHTTCCS-SEE
T ss_pred             EEEeccHHHHHHHHHHHHhccceeEEecCCCcHHHHHHHHHHcCC--CCEEEEccccHHHHHHHHHHHHHHHHhhc-cCC
Confidence            999999999999999999999999999999999999999999988  99999999999984 322    2333333 345


Q ss_pred             C-eEEEeccCC
Q 027650          185 N-VEIVESRPN  194 (220)
Q Consensus       185 d-iEIiE~HH~  194 (220)
                      | +||+|+||-
T Consensus       152 d~~eI~E~HH~  162 (162)
T d1diha1         152 DMRDVLDLNNL  162 (162)
T ss_dssp             CHHHHTTGGGC
T ss_pred             CeeEEEecCCC
Confidence            6 599999994

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.8e-38  Score=247.46  Aligned_cols=131  Identities=21%  Similarity=0.251  Sum_probs=113.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (220)
                      ||+|+||+||||+.+++.+.+.++++|++++|+.   .+.+                  ....     .++|||||||+|
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~---~~~~------------------~~~~-----~~~DvvIDFS~p   54 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG---DPLS------------------LLTD-----GNTEVVIDFTHP   54 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT---CCTH------------------HHHT-----TTCSEEEECCCT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC---Cchh------------------hhcc-----ccCCEEEEcccH
Confidence            8999999999999999999999999999999862   2222                  2222     379999999999


Q ss_pred             hhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHH-hhhcCceEEEcCCCcHHHHHHHHHHHHhcC---CCCCeEEEecc
Q 027650          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSIGSILLQQAAISASF---HYKNVEIVESR  192 (220)
Q Consensus       117 ~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~a-A~~~~v~vviapNfS~Gv~ll~~~a~~~~~---~~~diEIiE~H  192 (220)
                      +.+.++++.|+++|+|+|+|||||+++|.+.|+++ ++.+++|++++||||+|+|++.++.+.+++   ++||+||+|.|
T Consensus        55 ~~~~~~~~~~~~~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGvnll~~l~~~aa~~l~~~~diEiIe~h  134 (135)
T d1yl7a1          55 DVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFVPGVLLAVRRIAERPGLTVGLEPLLDL  134 (135)
T ss_dssp             TTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGHHHHHHHHHHGGGSCEEEESSGGGSCC
T ss_pred             HHHHHHHHHHHhcCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCccHHHHHHHHHHHHHHHhccccCCeeehhhc
Confidence            99999999999999999999999999999999985 445669999999999999988777655544   46899999999


Q ss_pred             C
Q 027650          193 P  193 (220)
Q Consensus       193 H  193 (220)
                      |
T Consensus       135 H  135 (135)
T d1yl7a1         135 H  135 (135)
T ss_dssp             C
T ss_pred             C
Confidence            9

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2.2e-29  Score=196.23  Aligned_cols=123  Identities=19%  Similarity=0.192  Sum_probs=103.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+|+|++||||+.+.+.+. .+++++++.+|.+..                       +.+      .++|||||||+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~-~~~~~l~~~id~~~~-----------------------~~~------~~~DVvIDFS~   50 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFS-EKGHELVLKVDVNGV-----------------------EEL------DSPDVVIDFSS   50 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEEETTEE-----------------------EEC------SCCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHh-cCCCeEEEEECCCcH-----------------------HHh------ccCCEEEEecC
Confidence            699999999999999988765 579999999885310                       011      27999999999


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCC---CCCeE-EEe
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH---YKNVE-IVE  190 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~---~~diE-IiE  190 (220)
                      |+.+.++++.|+++|+|+|+|||||++++.+.|++++++  +|++++||||+|++.+.++++.++..   +||+| |+|
T Consensus        51 p~~~~~~l~~~~~~~~p~ViGTTG~~~~~~~~i~~~ak~--~pv~~a~N~s~~~~~l~~~~~~~~~~~~~~~~~e~iie  127 (128)
T d1vm6a3          51 PEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKE--VPVVQAYSRTVFAIGALKAAEFLVGKDPGMYSFEEVIF  127 (128)
T ss_dssp             GGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHTTT--SEEEECSCTHHHHHHHHHHHHHHTTCCSEEECHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHHhh--CCEEeeeccChHHHHHHHHHHHHHhhcCCCCCEEEEEe
Confidence            999999999999999999999999999999999999988  99999999999998877666555433   34444 554

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.73  E-value=2e-17  Score=133.26  Aligned_cols=136  Identities=11%  Similarity=0.147  Sum_probs=111.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-CcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +|||||+|+ |+||+.+++.+...++++|+|++|++.. .+...+-.+.  +....+|+|++++++.    .++|+|+.+
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~----~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNY--PESTKIHGSYESLLED----PEIDALYVP   73 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC--CTTCEEESSHHHHHHC----TTCCEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcccc--ccceeecCcHHHhhhc----cccceeeec
Confidence            589999997 9999999999999999999999997421 1122222221  2245679999999975    689999999


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHH
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAI  177 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~  177 (220)
                      |++..+++.+..|+++|+||+|++| +.+.++.++|.++++++++.+.+.-|  |...+..++++.+
T Consensus        74 tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~~~~r~~~~~~~~k~li~  140 (184)
T d1ydwa1          74 LPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHPQEACMVREFAR  140 (184)
T ss_dssp             CCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGGGCHHHHHHHHHTT
T ss_pred             ccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEEEEEeeecChHHHHHHHHHH
Confidence            9999999999999999999999999 68999999999999999999987755  6777777777653

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=4.5e-17  Score=128.99  Aligned_cols=120  Identities=14%  Similarity=0.229  Sum_probs=102.7

Q ss_pred             CceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +|||||+|+ |+||+. +...+...++++|++++|++.  ..+.++.   +.++++.+++++++++      ++|+|+.+
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~--~~~~~~~---~~~~~~~~~~~~~l~~------~~D~V~I~   68 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTR--AKALPIC---ESWRIPYADSLSSLAA------SCDAVFVH   68 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSC--TTHHHHH---HHHTCCBCSSHHHHHT------TCSEEEEC
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechh--Hhhhhhh---hcccccccccchhhhh------hccccccc
Confidence            589999997 999976 788888999999999999753  2233333   2457888999999875      79999999


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      |+|..+.+.+..++++|+||++++| +.+.++..+|.++++++|+.+.+.-|+-
T Consensus        69 tp~~~h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r  122 (164)
T d1tlta1          69 SSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRR  122 (164)
T ss_dssp             SCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGG
T ss_pred             ccchhccccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcEEEEeccc
Confidence            9999999999999999999999999 7899999999999999999888875533

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.72  E-value=3.6e-17  Score=130.95  Aligned_cols=123  Identities=14%  Similarity=0.045  Sum_probs=102.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|||+|+|+ |+||+.+++.+.+.+++||++++++...  ..       ...++..+.+++++++      ++|+|+.+|
T Consensus         3 kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~--~~-------~~~~~~~~~~~~~~~~------~~D~Vvi~t   66 (170)
T d1f06a1           3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRAT--LD-------TKTPVFDVADVDKHAD------DVDVLFLCM   66 (170)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSC--CS-------SSSCEEEGGGGGGTTT------TCSEEEECS
T ss_pred             cceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccc--cc-------cccccccchhhhhhcc------ccceEEEeC
Confidence            589999997 9999999999999999999999997421  11       1334555677777664      799999999


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHH
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQ  173 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~  173 (220)
                      ++..+.+++..++++|+|+|...+  ..++++.++|.++|+++|..+++...|..|..-++
T Consensus        67 p~~~h~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~~~i~~g~~~~~~~~~  127 (170)
T d1f06a1          67 GSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGRNPDFTASS  127 (170)
T ss_dssp             CTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSCHHHHHHHH
T ss_pred             CCcccHHHHHHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCceEEEeceeccchhHHH
Confidence            999999999999999999885444  44578889999999999999999988998886543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=99.70  E-value=6.6e-17  Score=134.71  Aligned_cols=143  Identities=11%  Similarity=0.068  Sum_probs=113.8

Q ss_pred             CCCCCceEEEEcCCCHHHH-HHHHHHHhcCCcEEEEEEecCC-CCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc
Q 027650           31 PPQSNIKVIINGAVKEIGR-AAVIAVTKARGMEVAGAIDSHS-VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        31 ~~~~~ikV~V~Ga~GrMG~-~i~~~i~~~~~~eLvg~vd~~~-~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      ++..++||||+|+ |.||+ .+++.+...++++|++++|++. ..+...+..+.. ...+..|+|++++++.    .++|
T Consensus        29 ~~~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~-~~~~~~~~d~~ell~~----~~iD  102 (221)
T d1h6da1          29 PEDRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD----PKID  102 (221)
T ss_dssp             CCCCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC----TTCC
T ss_pred             CCCCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccc-cccccccCchhhhccc----ccce
Confidence            3356799999997 99997 5778888889999999999742 112222222321 2234568999999975    6899


Q ss_pred             EEEEccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHHHHh
Q 027650          109 VVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAAISA  179 (220)
Q Consensus       109 VVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a~~~  179 (220)
                      +|+.+|++..+.+.+..++++|+||++++| +.+.++..+|.++++++++.+++.-|  |+....-++++.+..
T Consensus       103 ~V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~li~~~  176 (221)
T d1h6da1         103 AVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYNQFSAQLDHLAEAV  176 (221)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHHH
T ss_pred             eeeeccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcEEEeeccccCHHHHHHHHHHHhh
Confidence            999899999999999999999999999999 78999999999999999999998766  677777677776543

>d1vm6a2 d.81.1.3 (A:97-182) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=1.3e-17  Score=120.69  Aligned_cols=47  Identities=26%  Similarity=0.188  Sum_probs=39.0

Q ss_pred             CCcHHHHHHHHHHHHhcC--CCCCeEEEeccCCCCCCCCchhhHHHHHHh
Q 027650          164 TLSIGSILLQQAAISASF--HYKNVEIVESRPNARMQLKSPTTSPTLVRS  211 (220)
Q Consensus       164 NfS~Gv~ll~~~a~~~~~--~~~diEIiE~HH~~K~DaPSGTA~~~~~~~  211 (220)
                      |||+|||+|+++++.+++  ..||+||+|.||++|+|+|||||+ .|.+.
T Consensus         1 NfSlGv~ll~~~~~~~~~~l~~~di~I~E~HH~~K~DaPSGTAl-~l~~~   49 (86)
T d1vm6a2           1 NFSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAI-LLESA   49 (86)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCCSSCHHHH-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHHhCcccCEEEehhhhhcCCCccchhHH-HHHHH
Confidence            999999999888665543  257999999999999999999999 44443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=2.7e-16  Score=126.61  Aligned_cols=120  Identities=15%  Similarity=0.125  Sum_probs=99.7

Q ss_pred             CceEEEEcCCCHHHHH-HHHHHHhcCC-cEEEEEEecCCCCcchhhhhcCCCCCCc-cccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRA-AVIAVTKARG-MEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~-~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      ++||||+|+ |++|+. ++..+.+.++ ++|+|++|++.  ..+..+..   .++. .+|+|++++++.    .++|+|+
T Consensus         3 kirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~--~~~~~~~~---~~~~~~~~~~~~ell~~----~~id~v~   72 (181)
T d1zh8a1           3 KIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFAK---MVGNPAVFDSYEELLES----GLVDAVD   72 (181)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHHH---HHSSCEEESCHHHHHHS----SCCSEEE
T ss_pred             CcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccH--hhhhhhhc---cccccceeeeeeccccc----cccceee
Confidence            589999997 999986 7888887655 79999999742  12222221   2333 468999999985    5799999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      .+|+++.+.+.+..++++|+||++++| +.+.+|..+|.++++++++.+.+.-|
T Consensus        73 I~tp~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~  126 (181)
T d1zh8a1          73 LTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAEN  126 (181)
T ss_dssp             ECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECG
T ss_pred             ccccccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEee
Confidence            899999999999999999999999999 78999999999999999999988766

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=99.66  E-value=7.2e-16  Score=122.26  Aligned_cols=127  Identities=11%  Similarity=0.116  Sum_probs=101.5

Q ss_pred             CceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCc-cccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEI-PVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv-~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .|||||+|+ |+||+. ++..+...++++++ ++|++.  ..+..+.   +.+++ .+|+|++++++     .++|+|+.
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~~~~~-~~d~~~--~~~~~~~---~~~~~~~~~~~~~~ll~-----~~iD~V~I   68 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLA---TRYRVSATCTDYRDVLQ-----YGVDAVMI   68 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHH---HHTTCCCCCSSTTGGGG-----GCCSEEEE
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCCcEEE-EEECCH--HHHHHHH---HhcccccccccHHHhcc-----cccceecc
Confidence            489999997 999965 78888899999997 677531  2222222   13343 46899999987     38999998


Q ss_pred             ccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC-CcHHHHHHH
Q 027650          113 FTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT-LSIGSILLQ  173 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN-fS~Gv~ll~  173 (220)
                      +|+|..+++.+..|+++|+||++++| +.+.++.++|.++++++|+.+.+.-| |...+.-+.
T Consensus        69 ~tp~~~H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~~r~~~~~~~~~  131 (167)
T d1xeaa1          69 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNGFDAMVQDWL  131 (167)
T ss_dssp             CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECGTHHHHHHHHH
T ss_pred             cccccccccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEEEEEeCcCCHHHHHHH
Confidence            99999999999999999999999999 78999999999999999999988755 444443333

>d1yl7a2 d.81.1.3 (A:106-214) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=5.4e-17  Score=122.30  Aligned_cols=44  Identities=23%  Similarity=0.280  Sum_probs=40.7

Q ss_pred             cHHHHHHHHHHHHhcCCCCCeEEEeccCCCCCCCCchhhHHHHH
Q 027650          166 SIGSILLQQAAISASFHYKNVEIVESRPNARMQLKSPTTSPTLV  209 (220)
Q Consensus       166 S~Gv~ll~~~a~~~~~~~~diEIiE~HH~~K~DaPSGTA~~~~~  209 (220)
                      |+|+|||+++++.+++++.|+||+|+||++|+|+|||||+.++.
T Consensus         1 SlGvnll~~l~~~aa~~~~dieI~E~HH~~K~DaPSGTAl~la~   44 (109)
T d1yl7a2           1 AIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAK   44 (109)
T ss_dssp             CHHHHHHHHHHHHHGGGCSEEEEEEEECTTCCEESCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhhCCCcEEEEcccccCCCCCchhHHHHHH
Confidence            79999999999999998889999999999999999999995443

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.5e-15  Score=121.05  Aligned_cols=132  Identities=16%  Similarity=0.118  Sum_probs=104.8

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      .+.++||+|+|+ |+||+.+++.+...++.+++++++.... +....      ..+. .+.++++++..    .++|+|+
T Consensus         4 ~~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~~-~~~~~------~~~~-~~~~~~e~l~~----~~iD~V~   70 (172)
T d1lc0a1           4 NSGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSR-RELGS------LDEV-RQISLEDALRS----QEIDVAY   70 (172)
T ss_dssp             CCCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECS-SCCCE------ETTE-EBCCHHHHHHC----SSEEEEE
T ss_pred             CCCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccch-HHHHH------hhcc-CcCCHHHHHhC----CCcchhh
Confidence            357899999997 9999999999988777666766663210 11111      1122 24589999975    6899999


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEEEcCC--CcHHHHHHHHHH
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT--LSIGSILLQQAA  176 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vviapN--fS~Gv~ll~~~a  176 (220)
                      .+|+++.+.+.+..|+++|+||++++| +.+.++.++|.++++++|+.+.+.-|  |+.....++++.
T Consensus        71 I~tp~~~H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i  138 (172)
T d1lc0a1          71 ICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLKNIFLKDQDIF  138 (172)
T ss_dssp             ECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGTTHHHHHHHHH
T ss_pred             hcccccccccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCCeEEEecHHHhhHHHHHHHHHH
Confidence            999999999999999999999999999 78999999999999999999987755  677776666654

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.60  E-value=6.6e-15  Score=123.27  Aligned_cols=145  Identities=12%  Similarity=0.086  Sum_probs=110.5

Q ss_pred             cCCCCCCCceEEEEcCC---CHHHHHHHHHHHh-cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhcccc
Q 027650           28 STNPPQSNIKVIINGAV---KEIGRAAVIAVTK-ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQ  103 (220)
Q Consensus        28 ~~~~~~~~ikV~V~Ga~---GrMG~~i~~~i~~-~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~  103 (220)
                      ++-|++.+|||||+|+.   |.+++.++.++.+ .++++|+|++|++.  ..+.++...-.......|+|+++++..   
T Consensus         9 ~~~~~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~---   83 (237)
T d2nvwa1           9 STVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTL--KSSLQTIEQLQLKHATGFDSLESFAQY---   83 (237)
T ss_dssp             GSSGGGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCH--HHHHHHHHHTTCTTCEEESCHHHHHHC---
T ss_pred             ccCCCCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCH--HHHHHHHHhcccccceeecchhhcccc---
Confidence            45566778999999973   2478888888865 58899999999742  112222210001234568999999975   


Q ss_pred             CCCccEEEEccCchhHHHHHHHHHHCC------CcEEEeCC-CCCHHHHHHHHHHhhh-cCceEEEcCC--CcHHHHHHH
Q 027650          104 SKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYVP-HIQLETVSALSAFCDK-ASMGCLIAPT--LSIGSILLQ  173 (220)
Q Consensus       104 ~~~~DVVIDfT~p~~~~~~~~~al~~G------~~vVigTt-G~~~e~~~~L~~aA~~-~~v~vviapN--fS~Gv~ll~  173 (220)
                       .++|+|+.+|++..+.+.+..++++|      +||+|++| +.+.+|.++|.+++++ +++++.+.-|  |..++.-++
T Consensus        84 -~~iD~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~~v~~~~R~~p~~~~~k  162 (237)
T d2nvwa1          84 -KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQGRYNSVVGNIL  162 (237)
T ss_dssp             -TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECGGGCCHHHHHHH
T ss_pred             -cccceeeccCCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCeeEEEEECCcCCHHHHHHH
Confidence             68999999999999999999999988      59999999 8999999999999876 4688776544  888887776


Q ss_pred             HHHHH
Q 027650          174 QAAIS  178 (220)
Q Consensus       174 ~~a~~  178 (220)
                      ++.+.
T Consensus       163 ~~i~~  167 (237)
T d2nvwa1         163 RIYES  167 (237)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66654

>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.6e-15  Score=114.26  Aligned_cols=44  Identities=18%  Similarity=0.240  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHhcC---CCCCeEEEeccCCCCCCCCchhhHHHHHH
Q 027650          167 IGSILLQQAAISASF---HYKNVEIVESRPNARMQLKSPTTSPTLVR  210 (220)
Q Consensus       167 ~Gv~ll~~~a~~~~~---~~~diEIiE~HH~~K~DaPSGTA~~~~~~  210 (220)
                      +|||||+++++.+++   ++||+||+|+||++|+|+|||||+.++-.
T Consensus         1 IGvnll~~l~~~~a~~l~~~~dieI~E~HH~~K~DaPSGTAl~lae~   47 (110)
T d1diha2           1 VGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEA   47 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCSSSCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhcccccChhhHHHHHhcCCCCCchHHHHHHHH
Confidence            699999877665544   46899999999999999999999954433

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.21  E-value=3e-11  Score=97.53  Aligned_cols=95  Identities=16%  Similarity=0.191  Sum_probs=72.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh--------------cCCCCCCccccCCHHHHHhc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC--------------DMEQPLEIPVMSDLTMVLGS  100 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~--------------g~~~~~gv~v~~dl~~~l~~  100 (220)
                      |+||||+|+ |||||.++|++.++|++|||++.|+... .....+.              .. ...++++..++..++. 
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~g~~~~~~~-   76 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPN-YEAFIAHRRGIRIYVPQQSIKKF-EESGIPVAGTVEDLIK-   76 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCS-HHHHHHHHTTCCEECCGGGHHHH-HTTTCCCCCCHHHHHH-
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCc-HHHHHhcccCcceeccCccceec-cccceecCCchhhhhh-
Confidence            899999996 9999999999999999999999985311 0000000              00 1235566677777775 


Q ss_pred             cccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                           ++|+|||+|..-...+.++..+++|+.+|+--+
T Consensus        77 -----~vDiViecTG~f~~~e~a~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          77 -----TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGG  109 (178)
T ss_dssp             -----HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             -----cCCEEEECCCCcCCHHHHHHHHHcCCEEEEECC
Confidence                 699999999988889999999999999998433

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=9.5e-10  Score=83.09  Aligned_cols=111  Identities=14%  Similarity=0.198  Sum_probs=96.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      -||.|-|.||+.|+.+.+...+. +..+|+.+.|...|+.         -.|+|+|++.+|+.++    .++|+-+.|-+
T Consensus         8 trVivQGiTG~~G~~ht~~m~~y-GT~iVaGVtPgkgG~~---------~~giPVf~tV~eAv~~----~~~d~SvIfVP   73 (121)
T d1oi7a1           8 TRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKGGME---------VLGVPVYDTVKEAVAH----HEVDASIIFVP   73 (121)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----SCCSEEEECCC
T ss_pred             CcEEEEcCCCcHHHHHHHHHHHh-CCceEeeeecCCCCcE---------EECCchHhhHHHHHHh----cCCeEEEEeeC
Confidence            48999999999999999988876 8999999998655543         2479999999999986    68998888999


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEE
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      |..+.+-+..|+++|+++|+.-| |...-+.-++.+.+++.++.++
T Consensus        74 p~~a~dAi~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~~~~li  119 (121)
T d1oi7a1          74 APAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI  119 (121)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCEEe
Confidence            99999999999999999987766 8888888889999998877654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=1e-10  Score=93.71  Aligned_cols=94  Identities=21%  Similarity=0.251  Sum_probs=69.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC--------------CCCCccccCCHHHHHh
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--------------QPLEIPVMSDLTMVLG   99 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~--------------~~~gv~v~~dl~~~l~   99 (220)
                      +++||||+|+ |||||.+.|++.+++++|||++.|.... .....+...+              ...+.++..++.+++.
T Consensus         1 M~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (172)
T d2czca2           1 MKVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPD-FEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE   78 (172)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCS-HHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT
T ss_pred             CcEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCCh-HHHHHhhhcCceeecccccceeeecccCccccchhhhhhc
Confidence            5689999996 9999999999999999999999985311 1111111000              0112334445666654


Q ss_pred             ccccCCCccEEEEccCchhHHHHHHHHHHCCCcEEE
Q 027650          100 SISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV  135 (220)
Q Consensus       100 ~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVi  135 (220)
                            ++|+|||+|..-...+.+...+++|+..|+
T Consensus        79 ------~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi  108 (172)
T d2czca2          79 ------KVDIIVDATPGGIGAKNKPLYEKAGVKAIF  108 (172)
T ss_dssp             ------TCSEEEECCSTTHHHHHHHHHHHHTCEEEE
T ss_pred             ------cCCEEEECCCCCCCHHHHHHHHHcCCCEEE
Confidence                  799999999999999999999999999887

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.2e-09  Score=82.25  Aligned_cols=111  Identities=16%  Similarity=0.253  Sum_probs=96.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      -||.|-|.||+-|+.+.+...+. +..+|+.+.|...|+.         ..|+|+|++.+|+.++    .++|+-+.|-+
T Consensus         7 trVlvQGiTG~~G~~ht~~m~~y-GT~vVaGVtPgkgG~~---------~~giPVf~sV~eAv~~----~~~~~SvIfVP   72 (119)
T d2nu7a1           7 TKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGGTT---------HLGLPVFNTVREAVAA----TGATASVIYVP   72 (119)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTEE---------ETTEEEESSHHHHHHH----HCCCEEEECCC
T ss_pred             CcEEEEcCCCcHHHHHHHHHHHh-CCceEEEEccCCCCcc---------cCCCchhhHHHHHHHH----hCCCeEEEecc
Confidence            58999999999999999988775 8999999998655543         3589999999999886    68998888999


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHhhhcCceEE
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      |..+.+-+..|+++|+++|+--| |...-+.-++.+.++++++.++
T Consensus        73 p~~a~dA~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~~~~li  118 (119)
T d2nu7a1          73 APFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI  118 (119)
T ss_dssp             GGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence            99999999999999999987765 8888888999999999887764

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=98.99  E-value=5.8e-10  Score=89.19  Aligned_cols=94  Identities=21%  Similarity=0.259  Sum_probs=68.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC--------------CCCCccccCCHHHHHhc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME--------------QPLEIPVMSDLTMVLGS  100 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~--------------~~~gv~v~~dl~~~l~~  100 (220)
                      |+||||+|. ||+||.+.|++.++++++||++-|.... .....+...+              ...++++..+..+++. 
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~-   77 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPD-FEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD-   77 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCS-HHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH-
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcH-HHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc-
Confidence            789999996 9999999999999999999999985311 0010110000              0112334445666654 


Q ss_pred             cccCCCccEEEEccCchhHHHHHHHHHHCCCcEEEe
Q 027650          101 ISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY  136 (220)
Q Consensus       101 ~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVig  136 (220)
                           ++|+|||+|..-...+.+...+++|+.+|+-
T Consensus        78 -----~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~  108 (171)
T d1cf2o1          78 -----EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQ  108 (171)
T ss_dssp             -----TCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred             -----CCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Confidence                 7999999999888889999999999998873

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.93  E-value=1.4e-08  Score=77.39  Aligned_cols=111  Identities=14%  Similarity=0.174  Sum_probs=91.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .-||.|-|.||+-|+.+.+...+. +..+||.+.|...|+.         ..|+|+|++.+|+.++    .++|+-+.|-
T Consensus        15 ~TrVivQGiTG~~G~~ht~~m~~Y-GT~iVaGVtPgKgG~~---------~~giPVf~tV~eA~~~----~~~daSvIfV   80 (130)
T d1euca1          15 NTKVICQGFTGKQGTFHSQQALEY-GTNLVGGTTPGKGGKT---------HLGLPVFNTVKEAKEQ----TGATASVIYV   80 (130)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTTCE---------ETTEEEESSHHHHHHH----HCCCEEEECC
T ss_pred             CCeEEEEcCCCcHHHHHHHHHHHh-cCCeEEeeccCCCCcc---------ccCccchhhHHHHHHh----cCCcEEEEec
Confidence            358999999999999999988875 8999999998654543         3589999999999875    6899888899


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCC-CCCHHHHHHHHHHh-hhcCceE
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFC-DKASMGC  159 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTt-G~~~e~~~~L~~aA-~~~~v~v  159 (220)
                      +|..+.+-+..|+++|+++|+.-| |...-+.-++.+.+ ++.++.+
T Consensus        81 Pp~~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~~~~~~~~l  127 (130)
T d1euca1          81 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRL  127 (130)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEE
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHHHhCCCcEE
Confidence            999999999999999999987766 88877777776654 5444443

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.91  E-value=2.8e-09  Score=83.91  Aligned_cols=126  Identities=17%  Similarity=0.194  Sum_probs=81.4

Q ss_pred             CCCCceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC-CHHHHHhccccCCCccE
Q 027650           32 PQSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAV  109 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DV  109 (220)
                      ++.++||||+| +|++|+. +.+.+..+|.+||+++++++..+... .++   ...+++++. +++++++.. ...++|+
T Consensus         1 M~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~-~~a---~~~~i~~~~~~~d~l~~~~-~~~~iDi   74 (157)
T d1nvmb1           1 MNQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGL-ARA---QRMGVTTTYAGVEGLIKLP-EFADIDF   74 (157)
T ss_dssp             CCSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHH-HHH---HHTTCCEESSHHHHHHHSG-GGGGEEE
T ss_pred             CCCCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccch-hhh---hhcCCcccccceeeeeecc-cccccCE
Confidence            35679999999 5999985 67888889999999999875433211 111   145666644 466665420 0126899


Q ss_pred             EEEccCchhHHHH--HHHHHHCCCcEEEeCCCCC-----HHHHHHHHHHhhhcCceEEEcCCC
Q 027650          110 VIDFTDASTVYDN--VKQATAFGMRSVVYVPHIQ-----LETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       110 VIDfT~p~~~~~~--~~~al~~G~~vVigTtG~~-----~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      |+++|++..+.++  +..++++|+.||--++...     +| .. .+++..+.++.++-+||-
T Consensus        75 Vf~ATpag~h~~~~~~~~aa~~G~~VID~s~a~~vplvVPe-vN-~~~~~~~~n~nlitc~~~  135 (157)
T d1nvmb1          75 VFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPV-VN-LEEHLGKLNVNMVTYAGN  135 (157)
T ss_dssp             EEECSCHHHHHHHHHHHHHHCTTCEEEECSTTCSSCBCCHH-HH-TTTTTTCSEEECCCTCHH
T ss_pred             EEEcCCchhHHHhHHHHHHHHcCCEEEEccccccceEEccC-cC-HHHHhcCCCCCeEecCch
Confidence            9988887777654  4667899999999887432     21 01 112333444666666763

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.88  E-value=2.1e-09  Score=86.25  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=66.2

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ..++||+|+||||..|+++++++.+||.+||+.+..+...|+..+++.........+.....++...     .++|+++ 
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~Dvvf-   76 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADF-----SNVDAVF-   76 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCG-----GGCSEEE-
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhh-----cccceee-
Confidence            5689999999999999999999999999999998877777888776543211112222222222222     2789988 


Q ss_pred             ccCchhH-HHHHHHHHHCCCcEEEeCC
Q 027650          113 FTDASTV-YDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       113 fT~p~~~-~~~~~~al~~G~~vVigTt  138 (220)
                      ++.|+.. .+.+....+.+ .+|.-..
T Consensus        77 ~alp~~~s~~~~~~l~~~~-~~v~~~~  102 (183)
T d2cvoa1          77 CCLPHGTTQEIIKGLPQEL-KIVDLSA  102 (183)
T ss_dssp             ECCSSSHHHHHHHTSCSSC-EEEECSS
T ss_pred             eccccchHHHHHHHHHhcC-cccccch
Confidence            6666665 45555544444 4444333

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=3.6e-09  Score=84.90  Aligned_cols=92  Identities=15%  Similarity=0.059  Sum_probs=65.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ||||+|+||||..|+++++++.+||.+||+.+..+...|+.++++...-...-.....+.+++..      +.|+++ ++
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~------~~dvvf-~a   73 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK------NCDVLF-TA   73 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH------HCSEEE-EC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhcc------ccceEE-Ec
Confidence            89999999999999999999999999999999988888988876542100111112346666654      689988 66


Q ss_pred             CchhHH-HHHHHHHHCCCcEEE
Q 027650          115 DASTVY-DNVKQATAFGMRSVV  135 (220)
Q Consensus       115 ~p~~~~-~~~~~al~~G~~vVi  135 (220)
                      .|+... +.+..  ..++.||-
T Consensus        74 ~p~~~s~~~~~~--~~~~~VID   93 (176)
T d1vkna1          74 LPAGASYDLVRE--LKGVKIID   93 (176)
T ss_dssp             CSTTHHHHHHTT--CCSCEEEE
T ss_pred             cccHHHHHHHHh--hccceEEe
Confidence            666654 44432  35666653

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.81  E-value=1.5e-08  Score=80.58  Aligned_cols=97  Identities=21%  Similarity=0.144  Sum_probs=66.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec---CCCCcchhhhhcC-C--CCCCccccCCHHHHHhccccCCCcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS---HSVGEDIGMVCDM-E--QPLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~---~~~g~d~g~l~g~-~--~~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      ||||+|+||||..|++++|.+.+||++++..+...   ...|+...+.... .  .........+.+...      .+.|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~d   74 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFS------ADVD   74 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTC------TTCC
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhh------cccc
Confidence            89999999999999999999999999999998763   2456665543211 0  011111223333333      3789


Q ss_pred             EEEEccCch-hHHHHHHHHHHCCCcEEEeCC
Q 027650          109 VVIDFTDAS-TVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       109 VVIDfT~p~-~~~~~~~~al~~G~~vVigTt  138 (220)
                      +++ ++.|+ ...+.+..+.+.|+.+|--..
T Consensus        75 vvf-~alp~~~s~~~~~~~~~~~~~vIDlSa  104 (179)
T d2g17a1          75 VVF-LATAHEVSHDLAPQFLQAGCVVFDLSG  104 (179)
T ss_dssp             EEE-ECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             eee-ccccchhHHHHhhhhhhcCceeecccc
Confidence            988 55555 446888899999998885433

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.65  E-value=3.3e-08  Score=76.44  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHH--hcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVT--KARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~--~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +|||||+||||..|+++++.+.  .+|.++|..+..+...|+.+....     .... ..+++....     .+.|+++ 
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~-----~~~~-~~~~~~~~~-----~~~d~vf-   69 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE-----SSLR-VGDVDSFDF-----SSVGLAF-   69 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT-----EEEE-CEEGGGCCG-----GGCSEEE-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeecc-----ccch-hccchhhhh-----ccceEEE-
Confidence            5899999999999999999996  579999998877767777654321     1112 223333222     2789888 


Q ss_pred             ccCchh-HHHHHHHHHHCCCcEEEeCC
Q 027650          113 FTDAST-VYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       113 fT~p~~-~~~~~~~al~~G~~vVigTt  138 (220)
                      |+.|.. ..+....+.++|+.||-=..
T Consensus        70 ~a~p~~~s~~~~~~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          70 FAAAAEVSRAHAERARAAGCSVIDLSG   96 (144)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEETTC
T ss_pred             ecCCcchhhhhccccccCCceEEeech
Confidence            655554 57888999999998885443

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=9.1e-08  Score=75.51  Aligned_cols=138  Identities=12%  Similarity=0.083  Sum_probs=82.0

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCC---cEEEEEEecC-----CCCcchhhhhcCCC--CCCccccCCHHHHHhccc
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARG---MEVAGAIDSH-----SVGEDIGMVCDMEQ--PLEIPVMSDLTMVLGSIS  102 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~---~eLvg~vd~~-----~~g~d~g~l~g~~~--~~gv~v~~dl~~~l~~~~  102 (220)
                      ..+++|+|+|+ |.+|+.+++.+.+...   ++++++.++.     ..|.+.........  .....-..+.+.+...+.
T Consensus         2 ~k~i~I~l~G~-G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (168)
T d1ebfa1           2 TKVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLK   80 (168)
T ss_dssp             CSEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHT
T ss_pred             CCEEEEEEEeC-CHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhc
Confidence            46799999997 9999999999886543   5788888742     11222211000000  000011222222221111


Q ss_pred             cCCCccEEEEccCchhHHHHHHHHHHCCCcEEEeCC-CC--CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHH
Q 027650          103 QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HI--QLETVSALSAFCDKASMGCLIAPTLSIGSILL  172 (220)
Q Consensus       103 ~~~~~DVVIDfT~p~~~~~~~~~al~~G~~vVigTt-G~--~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll  172 (220)
                      .....|+++|+|.-+...++.+.++++|+|||..-- .+  .-++.++|.+++++++ .+.+-....=|+-++
T Consensus        81 ~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTANK~~la~~~~~~~~L~~~a~~~~-~~~yEatVgaGiPiI  152 (168)
T d1ebfa1          81 TSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNG-FVYHEATVGAGLAAV  152 (168)
T ss_dssp             TCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCC-CEECGGGTTTTSHHH
T ss_pred             cCCCceEEEEecCChHHHHHHHHHHHcCCeEEecCcccccCCHHHHHHHHHHHHHCC-cEEEeCeeeechhHH
Confidence            124678999999888788888999999999995432 22  3466777877776655 355555544444443

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=9.3e-07  Score=68.38  Aligned_cols=114  Identities=6%  Similarity=-0.032  Sum_probs=69.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc---CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH-HHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA---RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~---~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVV  110 (220)
                      |.||+|+||||..|+++++.+.++   |-.+|+....++..|+.....     .....+....+ +.+.      ++|++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~-----~~~~~~~~~~~~~~~~------~~Div   69 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFG-----GTTGTLQDAFDLEALK------ALDII   69 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGG-----TCCCBCEETTCHHHHH------TCSEE
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccccc-----CCceeeecccchhhhh------cCcEE
Confidence            679999999999999999876655   677888766555445443321     11222222222 2233      79999


Q ss_pred             EEccCchhH-HHHHHHHHHCCCc-EEEeCC-CC--C-------HH-HHHHHHHHhhhcCceEEE
Q 027650          111 IDFTDASTV-YDNVKQATAFGMR-SVVYVP-HI--Q-------LE-TVSALSAFCDKASMGCLI  161 (220)
Q Consensus       111 IDfT~p~~~-~~~~~~al~~G~~-vVigTt-G~--~-------~e-~~~~L~~aA~~~~v~vvi  161 (220)
                      + |+.|... .+....+.++|.. +||-.. .|  +       +| ..+.|+ .+.++|+.-++
T Consensus        70 F-~a~~~~~s~~~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~-~~~~~g~~~~i  131 (146)
T d1t4ba1          70 V-TCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVIT-DGLNNGIRTFV  131 (146)
T ss_dssp             E-ECSCHHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHH-HHHHTTCCEEE
T ss_pred             E-EecCchHHHHhhHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHH-HHHHcCCceEE
Confidence            9 6666554 6888899999976 444443 22  2       22 222333 44567776665

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.56  E-value=2.9e-07  Score=68.57  Aligned_cols=105  Identities=15%  Similarity=0.200  Sum_probs=83.2

Q ss_pred             eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +|+|+|++   |+.|..+.+.+.+. ++++..+ .+.  +   .+      -.|+++|.+++++-.      .+|+++.|
T Consensus         3 sIAVvGaS~~~~k~g~~v~~~L~~~-g~~V~pV-nP~--~---~~------i~G~~~y~sl~~lp~------~~D~vvi~   63 (116)
T d1y81a1           3 KIALVGASKNPAKYGNIILKDLLSK-GFEVLPV-NPN--Y---DE------IEGLKCYRSVRELPK------DVDVIVFV   63 (116)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHT-TCEEEEE-CTT--C---SE------ETTEECBSSGGGSCT------TCCEEEEC
T ss_pred             EEEEEcccCCCCCcHHHHHHHHHHC-CCEEEEE-ccc--c---cc------ccCccccccchhccc------cceEEEEE
Confidence            69999987   88999999998874 7787654 443  1   22      247788999998764      79999889


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      ++|+...+.++.|++.|.+.|...+|...+   ++.+.++++|+.++- ||
T Consensus        64 vp~~~~~~~l~~~~~~g~k~v~~~~g~~~~---~~~~~a~~~gi~vig-pn  110 (116)
T d1y81a1          64 VPPKVGLQVAKEAVEAGFKKLWFQPGAESE---EIRRFLEKAGVEYSF-GR  110 (116)
T ss_dssp             SCHHHHHHHHHHHHHTTCCEEEECTTSCCH---HHHHHHHHHTCEEEC-SC
T ss_pred             eCHHHHHHHHHHHHhcCCceEEeccchhhH---HHHHHHHHcCCEEEc-CC
Confidence            999999999999999999999888876543   467888998987665 65

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.55  E-value=2.1e-07  Score=71.42  Aligned_cols=113  Identities=18%  Similarity=0.136  Sum_probs=80.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+|+|. |.||+.+++.+.+. +++++. +++..  .......    ..++.+..+++++..      .+|+||-+.+
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~-g~~v~~-~~~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSR-GVEVVT-SLEGR--SPSTIER----ARTVGVTETSEEDVY------SCPVVISAVT   65 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHT-TCEEEE-CCTTC--CHHHHHH----HHHHTCEECCHHHHH------TSSEEEECSC
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHC-CCeEEE-EcCch--hHHHHHh----hhcccccccHHHHHh------hcCeEEEEec
Confidence            79999996 99999999999875 888875 34321  1111111    113344567888876      7999997778


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      ++...+.+..+...--..++-.+..+++..+++.+.+++.  ..+-+|-+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~  113 (152)
T d1i36a2          66 PGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKG--GFVDAAIM  113 (152)
T ss_dssp             GGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEEC
T ss_pred             CchHHHHHHhhcccCCceeeccCcCCHHHHHHHHHHHhcc--CCCccccc
Confidence            8888888888777767777777778888888999888763  34544433

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.55  E-value=2.4e-07  Score=70.31  Aligned_cols=110  Identities=14%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             ceEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           36 IKVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        36 ikV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -.|+|+|++   |++|..+.+.+.+.-.-++..+ .+..     .+      -.|++.|.+++++-.      .+|.++.
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pV-nP~~-----~~------i~G~~~y~sl~dlp~------~vDlvvi   70 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPV-NIKE-----EE------VQGVKAYKSVKDIPD------EIDLAII   70 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEE-CSSC-----SE------ETTEECBSSTTSCSS------CCSEEEE
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEe-ccCc-----cc------cCCeEeecchhhcCC------CCceEEE
Confidence            379999998   9999999999876433566654 3321     22      247788999998854      7999998


Q ss_pred             ccCchhHHHHHHHHHHCCCcE-EEeCCCCCH------HHHHHHHHHhhhcCceEEEcCC
Q 027650          113 FTDASTVYDNVKQATAFGMRS-VVYVPHIQL------ETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G~~v-VigTtG~~~------e~~~~L~~aA~~~~v~vviapN  164 (220)
                      |++++.+.+.++.|.+.|++- |+=+.||++      +..++|.++|++.|++++ -||
T Consensus        71 ~vp~~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~-GPN  128 (129)
T d2csua1          71 VVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII-GPN  128 (129)
T ss_dssp             CSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE-CSS
T ss_pred             ecChHHhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEe-CCC
Confidence            999999999999999999985 444557753      233568888999999876 466

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.49  E-value=3.1e-07  Score=70.86  Aligned_cols=113  Identities=15%  Similarity=0.193  Sum_probs=75.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+++|+ |+||+.+++.+.+. +.++. ++++..  +...++.   +.+|+.++.|.+++.+      .+|+||-+..
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~-~~~i~-v~~r~~--~~~~~l~---~~~g~~~~~~~~~~~~------~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQT-PHELI-ISGSSL--ERSKEIA---EQLALPYAMSHQDLID------QVDLVILGIK   66 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTS-SCEEE-EECSSH--HHHHHHH---HHHTCCBCSSHHHHHH------TCSEEEECSC
T ss_pred             CEEEEEec-cHHHHHHHHHHHhC-CCeEE-EEcChH--HhHHhhc---cccceeeechhhhhhh------ccceeeeecc
Confidence            79999997 99999999998765 55665 455431  2223333   2456778889999987      7999997777


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEc-CCCcH
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-PTLSI  167 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvia-pNfS~  167 (220)
                      |....+.+ ..++.+..+|.-.+|.+.+++   ++... .+.+++.+ ||...
T Consensus        67 p~~~~~vl-~~l~~~~~iis~~agi~~~~l---~~~l~-~~~~ivr~mPN~~~  114 (152)
T d2ahra2          67 PQLFETVL-KPLHFKQPIISMAAGISLQRL---ATFVG-QDLPLLRIMPNMNA  114 (152)
T ss_dssp             GGGHHHHH-TTSCCCSCEEECCTTCCHHHH---HHHHC-TTSCEEEEECCGGG
T ss_pred             hHhHHHHh-hhcccceeEecccccccHHHH---Hhhhc-ccccchhhccchhh
Confidence            77665554 345667777766668887654   44332 22556533 77543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.42  E-value=1.5e-06  Score=67.27  Aligned_cols=117  Identities=19%  Similarity=0.194  Sum_probs=79.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc-
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT-  114 (220)
                      |||+++|. |.||+.+++.+.+ .++++. ++|+..  +...++.    ..+..+..+++++..      ++|++|-+- 
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~-~G~~V~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLK-AGYSLV-VSDRNP--EAIADVI----AAGAETASTAKAIAE------QCDVIITMLP   65 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHH-TTCEEE-EECSCH--HHHHHHH----HTTCEECSSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEeh-hHHHHHHHHHHHH-CCCeEE-EEeCCc--chhHHHH----HhhhhhcccHHHHHh------CCCeEEEEcC
Confidence            69999996 9999999999986 488876 577642  2233333    345677889999986      799988554 


Q ss_pred             CchhHHHHH------HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          115 DASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       115 ~p~~~~~~~------~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      .++.+.+.+      ...++.|. +|+-.+..+++...++.+.+++.|+..+=+| .|-|.
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~-iiid~sT~~p~~~~~~~~~~~~~g~~~vdap-v~gg~  124 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGT-VLIDMSSIAPLASREISDALKAKGVEMLDAP-VSGGE  124 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTC-EEEECSCCCHHHHHHHHHHHHTTTCEEEECC-EESHH
T ss_pred             CHHHHHHHHhCCcchhhccCCCC-EEEECCCCCHHHHHHHHHHHHHcCCceeccc-ccCCh
Confidence            344444433      22233454 4445555777888888888888888887665 34443

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.42  E-value=4e-07  Score=68.53  Aligned_cols=87  Identities=14%  Similarity=0.121  Sum_probs=66.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC--CCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH--SVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~--~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVV  110 (220)
                      +.||+|+|| |++|+.+++.+...++++++|++|.+  ..|+.+         .|++|+  ++++++..     ...+++
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I---------~Gi~V~~~~~l~~~~~-----~~i~ia   67 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPV---------RGGVIEHVDLLPQRVP-----GRIEIA   67 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE---------TTEEEEEGGGHHHHST-----TTCCEE
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE---------CCEEEecHHHHHHHHh-----hcccEE
Confidence            579999998 99999999988878899999999953  334332         367775  55666654     368887


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEe
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVY  136 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVig  136 (220)
                      +-+.+.....+.+..+.+.|++-+..
T Consensus        68 i~~i~~~~~~~I~d~l~~~gIk~I~~   93 (126)
T d2dt5a2          68 LLTVPREAAQKAADLLVAAGIKGILN   93 (126)
T ss_dssp             EECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred             EEeCCHHHHHHHHHHHHHcCCCEEee
Confidence            76666666678889999999986655

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=98.41  E-value=8.5e-07  Score=68.80  Aligned_cols=91  Identities=10%  Similarity=-0.068  Sum_probs=60.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH-HHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT-MVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~-~~l~~~~~~~~~DVVI  111 (220)
                      |||||+|+||..|+++++.+.+   +|..+|+.+..+...|+... +.    .....+....+ +.+.      ++|+|+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~-~~----~~~~~~~~~~~~~~~~------~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPN-FG----KDAGMLHDAFDIESLK------QLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCC-SS----SCCCBCEETTCHHHHT------TCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccc-cC----Ccceeeecccchhhhc------cccEEE
Confidence            7999999999999999998764   56789987766655454321 11    11122222222 2233      799999


Q ss_pred             EccCchhH-HHHHHHHHHCCCc-EEEeCC
Q 027650          112 DFTDASTV-YDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus       112 DfT~p~~~-~~~~~~al~~G~~-vVigTt  138 (220)
                       |+.|+.. .+.+..++++|+. +||=-.
T Consensus        70 -~alp~~~s~~~~~~l~~~g~~~~VIDlS   97 (147)
T d1mb4a1          70 -TCQGGSYTEKVYPALRQAGWKGYWIDAA   97 (147)
T ss_dssp             -ECSCHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred             -EecCchHHHHHhHHHHHcCCceEEEeCC
Confidence             6666655 6778889999976 455433

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.37  E-value=3.7e-06  Score=65.03  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=78.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |.||+++|. |.||..+++.+.+. ++++. ++|++.  +....+.    ..+.....++.+++.      ..|+++.+-
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~-g~~v~-~~d~~~--~~~~~~~----~~~~~~~~~~~e~~~------~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKA-GYLLN-VFDLVQ--SAVDGLV----AAGASAARSARDAVQ------GADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHT-TCEEE-EECSSH--HHHHHHH----HTTCEECSSHHHHHT------SCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHC-CCeEE-EEECch--hhhhhhh----hhhccccchhhhhcc------ccCeeeecc
Confidence            679999996 99999999999874 78865 577642  2222222    345566778888885      789888544


Q ss_pred             CchhHHHHH-H------HHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          115 DASTVYDNV-K------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       115 ~p~~~~~~~-~------~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      +.....+.+ .      ..+..| .+|+-++..+++...++.+.+++.|+..+=+|-+
T Consensus        66 ~~~~~~~~v~~~~~~~~~~l~~g-~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~  122 (162)
T d3cuma2          66 PASQHVEGLYLDDDGLLAHIAPG-TLVLECSTIAPTSARKIHAAARERGLAMLDAPVS  122 (162)
T ss_dssp             SCHHHHHHHHHSTTCHHHHSCTT-CEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             cchhhHHHHHhccccccccCCCC-CEEEECCCCCHHHHHHHHHHHHHCCCcEEecccc
Confidence            433333322 1      122234 4666777788889999999999999988876643

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.35  E-value=2.3e-06  Score=65.55  Aligned_cols=105  Identities=16%  Similarity=0.107  Sum_probs=81.9

Q ss_pred             eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +|+|+|++   |+.|..+++.+.+. ++++..+ .+..     .+      -.|.++|.+++++-.      .+|+++-|
T Consensus        21 sIAVVGaS~~~~~~g~~v~~~L~~~-g~~v~pV-nP~~-----~~------i~G~~~~~sl~dlp~------~iD~v~i~   81 (139)
T d2d59a1          21 KIALVGASPKPERDANIVMKYLLEH-GYDVYPV-NPKY-----EE------VLGRKCYPSVLDIPD------KIEVVDLF   81 (139)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHT-TCEEEEE-CTTC-----SE------ETTEECBSSGGGCSS------CCSEEEEC
T ss_pred             eEEEEeecCCCCCchHHHHHHHHHC-CCEEEEE-CCcc-----cc------cCCCcccccccccCc------cceEEEEE
Confidence            69999998   89999999998875 7887654 4431     22      246789999998754      79998889


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      .+|+...+.++.|++.|...|.=-+|...|   ++.+.++++|+.++- ||
T Consensus        82 vp~~~~~~~~~e~~~~g~k~v~~~~G~~~e---e~~~~a~~~gi~vig-~~  128 (139)
T d2d59a1          82 VKPKLTMEYVEQAIKKGAKVVWFQYNTYNR---EASKKADEAGLIIVA-NR  128 (139)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEECTTCCCH---HHHHHHHHTTCEEEE-SC
T ss_pred             eCHHHHHHHHHHHHHhCCCEEEEeccccCH---HHHHHHHHCCCEEEc-CC
Confidence            999999999999999999998877754333   356678888887665 66

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.34  E-value=4.1e-07  Score=70.59  Aligned_cols=93  Identities=13%  Similarity=0.113  Sum_probs=64.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .||||+||||..|+++++.+.+|  |..++..+..+...|+......     .........+...      .+.|+++-.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~-----~~~~~~~~~~~~~------~~~d~~f~~   70 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKD-----QDITIEETTETAF------EGVDIALFS   70 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETT-----EEEEEEECCTTTT------TTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccC-----Ccccccccchhhh------hhhhhhhhc
Confidence            58999999999999999999999  7788887776655566543321     1122222223333      267888844


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                      +.+....+.+..+.+.|+.||--...
T Consensus        71 ~~~~~s~~~~~~~~~~~~~VIDlSsd   96 (154)
T d2gz1a1          71 AGSSTSAKYAPYAVKAGVVVVDNTSY   96 (154)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSST
T ss_pred             cCccchhhHHhhhccccceehhcChh
Confidence            55555678888899999999965543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.30  E-value=2.7e-07  Score=70.88  Aligned_cols=113  Identities=14%  Similarity=0.175  Sum_probs=71.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||+++|+ |+||+.+++.+.+....++. ++|+..  +....+.   +.+++.++++.+++ .      ++|+||-+..
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~-v~~r~~--~~~~~l~---~~~~~~~~~~~~~v-~------~~Div~lavk   66 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIY-IANRGA--EKRERLE---KELGVETSATLPEL-H------SDDVLILAVK   66 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEE-EECSSH--HHHHHHH---HHTCCEEESSCCCC-C------TTSEEEECSC
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEE-EEeCCh--hHHHHhh---hhcccccccccccc-c------ccceEEEecC
Confidence            79999997 99999999988766556665 677642  2233333   24577778777664 2      6899997778


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCc
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLS  166 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS  166 (220)
                      |....+.++.....+.-+|.-..|.+.++   |++.... ..+++ .-||..
T Consensus        67 P~~~~~v~~~l~~~~~~viS~~ag~~~~~---l~~~l~~-~~~iir~mpn~p  114 (152)
T d1yqga2          67 PQDMEAACKNIRTNGALVLSVAAGLSVGT---LSRYLGG-TRRIVRVMPNTP  114 (152)
T ss_dssp             HHHHHHHHTTCCCTTCEEEECCTTCCHHH---HHHHTTS-CCCEEEEECCGG
T ss_pred             HHHHHHhHHHHhhcccEEeecccCCCHHH---HHHHhCc-CcceEeecccch
Confidence            87776666554444544444345888755   4444321 23444 236643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.27  E-value=2e-06  Score=68.73  Aligned_cols=128  Identities=14%  Similarity=0.172  Sum_probs=79.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC--------CCcchhhhhcCCCCCCccccCCHHHHHhccccCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS--------VGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSK  105 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~--------~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~  105 (220)
                      .|.||+|+|+ |.||..++..+... +.++. +++++.        .+....-+.+..-+.++.+++|+++++.      
T Consensus         6 ~m~KI~ViGa-G~wGtAlA~~La~~-g~~V~-l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~------   76 (189)
T d1n1ea2           6 YLNKAVVFGS-GAFGTALAMVLSKK-CREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN------   76 (189)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHTT-EEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT------
T ss_pred             eeceEEEECC-CHHHHHHHHHHHHc-CCeEE-EEEecHHHHHHHhhcccccccccccccccccccchhhhhccC------
Confidence            4568999997 99999999888653 45543 455421        0111111122212346778899999996      


Q ss_pred             CccEEEEccCchhHHHHHHH--------HHHCCCcEEEeCCCCCHHHHHHHHHHhh----hcCceEEEcCCCcHHHH
Q 027650          106 ARAVVIDFTDASTVYDNVKQ--------ATAFGMRSVVYVPHIQLETVSALSAFCD----KASMGCLIAPTLSIGSI  170 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~--------al~~G~~vVigTtG~~~e~~~~L~~aA~----~~~v~vviapNfS~Gv~  170 (220)
                      ++|+||-..+.....+.++.        .+..+.++|+.+-|+..+....+.+..+    ...+.++--|||+--+.
T Consensus        77 ~ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~  153 (189)
T d1n1ea2          77 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVA  153 (189)
T ss_dssp             TCSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHH
T ss_pred             CCCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHH
Confidence            79998844444444444433        3567888988777886544444443332    33455666699998773

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=98.22  E-value=2.1e-06  Score=65.33  Aligned_cols=105  Identities=13%  Similarity=0.122  Sum_probs=82.5

Q ss_pred             eEEEEcCC---CHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           37 KVIINGAV---KEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~---GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .|+|+|++   ++.|..+.+.+.+. ++.+..+ -+...+..         -.|.+.|.++.++-.      .+|+++-|
T Consensus        15 sIAVVGaS~~~~k~g~~v~~~L~~~-g~~~~~v-~~~~~~~~---------i~g~~~~~~l~~i~~------~iD~v~v~   77 (136)
T d1iuka_          15 TIAVLGAHKDPSRPAHYVPRYLREQ-GYRVLPV-NPRFQGEE---------LFGEEAVASLLDLKE------PVDILDVF   77 (136)
T ss_dssp             EEEEETCCSSTTSHHHHHHHHHHHT-TCEEEEE-CGGGTTSE---------ETTEECBSSGGGCCS------CCSEEEEC
T ss_pred             eEEEEeecCCCCCchHHHHHHHhcC-CCCceEE-Eeccccce---------eeceecccchhhccC------CCceEEEe
Confidence            69999987   78999999988764 7765543 22211211         246788999998754      79998889


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vvi  161 (220)
                      .+|+.+.+.++.|.+.|+..++-.+|..++   ++.++|+++|+.++-
T Consensus        78 ~p~~~v~~~v~~~~~~g~k~i~~q~G~~~~---e~~~~a~~~Gi~vV~  122 (136)
T d1iuka_          78 RPPSALMDHLPEVLALRPGLVWLQSGIRHP---EFEKALKEAGIPVVA  122 (136)
T ss_dssp             SCHHHHTTTHHHHHHHCCSCEEECTTCCCH---HHHHHHHHTTCCEEE
T ss_pred             ccHHHHHHHHHHHHhhCCCeEEEecCccCH---HHHHHHHHcCCEEEc
Confidence            999999999999999999999888987654   478889999999886

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.20  E-value=5e-06  Score=63.94  Aligned_cols=101  Identities=14%  Similarity=0.186  Sum_probs=64.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC-c-cccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE-I-PVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g-v-~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      |||+|+|+ |+||..+++.+.+ .+.++++ +|++.  ..+....    ..+ + ...++++ .+.      ++|+||.+
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~-~g~~V~~-~d~~~--~~~~~a~----~~~~~~~~~~~~~-~~~------~~DiIila   64 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRR-RGHYLIG-VSRQQ--STCEKAV----ERQLVDEAGQDLS-LLQ------TAKIIFLC   64 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSCH--HHHHHHH----HTTSCSEEESCGG-GGT------TCSEEEEC
T ss_pred             CEEEEEee-cHHHHHHHHHHHH-CCCEEEE-EECCc--hHHHHHH----Hhhccceeeeecc-ccc------cccccccc
Confidence            79999997 9999999998875 5889875 68642  1122222    112 1 2234554 443      79999976


Q ss_pred             cCchhHHHHHHHHHH--CCCcEEEeCCCCCHHHHHHHHHHh
Q 027650          114 TDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFC  152 (220)
Q Consensus       114 T~p~~~~~~~~~al~--~G~~vVigTtG~~~e~~~~L~~aA  152 (220)
                      +++....+.+.....  .+..+|+-+.+........+.+..
T Consensus        65 vp~~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~  105 (165)
T d2f1ka2          65 TPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW  105 (165)
T ss_dssp             SCHHHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS
T ss_pred             CcHhhhhhhhhhhhhhcccccceeeccccchHHHHHHHHhh
Confidence            766666666665544  356677767666665555555543

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.08  E-value=2.9e-06  Score=68.36  Aligned_cols=35  Identities=34%  Similarity=0.453  Sum_probs=30.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc----CCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA----RGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~----~~~eLvg~vd~   69 (220)
                      ++|||||+|. ||+||.+.|.+.+.    ++++++++.|+
T Consensus         1 M~ikigINGF-GRIGR~vlR~~~~~~~~~~~i~iv~Ind~   39 (190)
T d1k3ta1           1 MPIKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDM   39 (190)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTTCBTTTEEEEEEEES
T ss_pred             CCeEEEEECC-ChHHHHHHHHHHHcCCCCCCeEEEEEecC
Confidence            4689999996 99999999988654    67999999986

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=98.07  E-value=3.8e-06  Score=66.48  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ++||||+|. ||+||.+.|.+.+.+++++|++-|+
T Consensus         1 kikIgINGF-GRIGR~v~R~~~~~~~~~ivaINd~   34 (169)
T d1u8fo1           1 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDP   34 (169)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECS
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHCCCcEEEEecCC
Confidence            589999996 9999999999999999999999885

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.00  E-value=4.9e-05  Score=57.52  Aligned_cols=123  Identities=15%  Similarity=0.088  Sum_probs=81.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCC-----CccccCCHHHHHhccccCCCccEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPL-----EIPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~-----gv~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      .||.|+|+ |+||+.+++.+.+. +.++ -++|++.  ..+.++..-....     +......+++.+.      ..|++
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~-g~~V-~v~dr~~--~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~------~~~~~   71 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDS-GIKV-TVACRTL--ESAKKLSAGVQHSTPISLDVNDDAALDAEVA------KHDLV   71 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTT-TCEE-EEEESCH--HHHHHHHTTCTTEEEEECCTTCHHHHHHHHT------TSSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhC-CCEE-EEEECCh--HHHHHHHhcccccccccccccchhhhHhhhh------cccee
Confidence            58999998 99999999988764 7886 4788642  2233333210000     0111123344443      68888


Q ss_pred             EEccCchhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHH
Q 027650          111 IDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL  171 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~l  171 (220)
                      +..++.......+..+.+.+.+++.  .....+....|.+.++..+..++..........+
T Consensus        72 i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  130 (182)
T d1e5qa1          72 ISLIPYTFHATVIKSAIRQKKHVVT--TSYVSPAMMELDQAAKDAGITVMNEIGYSAMAKL  130 (182)
T ss_dssp             EECSCGGGHHHHHHHHHHHTCEEEC--SSCCCHHHHHTHHHHHHTTCEEECSCBCCHHHHH
T ss_pred             EeeccchhhhHHHHHHHhhccceee--cccCcHHHHHHHHHhccccceeehhhhcchhhhh
Confidence            8778777778888999999999883  3344455678888888877777766666655443

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.7e-05  Score=62.50  Aligned_cols=34  Identities=38%  Similarity=0.433  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +|||||+|. ||+||.+.|.+.+.+++++|++=|+
T Consensus         1 tikigINGF-GRIGR~v~R~~~~~~~i~ivaINd~   34 (166)
T d1gado1           1 TIKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDL   34 (166)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             CeEEEEECC-cHHHHHHHHHHhhCCCeEEEEEeCC
Confidence            479999996 9999999999999999999998874

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=3.2e-05  Score=67.02  Aligned_cols=105  Identities=11%  Similarity=0.094  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCccccCCHHHHHhccccCCCccEEEEcc------Cc
Q 027650           44 VKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT------DA  116 (220)
Q Consensus        44 ~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~-g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT------~p  116 (220)
                      .|+||..++|   ..+..+++++ |++..|+++++.+ |.  ..++|++.|++++++.     .++++|.-.      .|
T Consensus        25 ~gKTa~gLlR---y~~~~~v~~V-~~~~aG~~~~~~l~g~--~~~IPIv~s~~~A~~~-----g~~~liiGvAp~GG~lp   93 (338)
T d2g0ta1          25 HAKTTYGLLR---HSRLFKPVCV-VAEHEGKMASDFVKPV--RYDVPVVSSVEKAKEM-----GAEVLIIGVSNPGGYLE   93 (338)
T ss_dssp             GGHHHHHHHH---HCSSEEEEEE-ESSCTTCBGGGTCC-C--CSCCBEESSHHHHHHT-----TCCEEEECCCSCCHHHH
T ss_pred             CchHhhhHHh---ccCCCeEEEE-ECCCCCCchhhhcCCC--CCCCCEeCCHHHHHhc-----CCCEEEEEecccCCcCC
Confidence            3666666655   4456666655 5566899999854 43  4689999999999984     899888632      27


Q ss_pred             hhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE
Q 027650          117 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL  160 (220)
Q Consensus       117 ~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv  160 (220)
                      +.+.+.+..|+++|+++|.|---+ -.+..+|.++|+++|+.++
T Consensus        94 ~~w~~~i~~Al~~Gl~IvsGLH~~-L~ddpel~~~A~~~g~~i~  136 (338)
T d2g0ta1          94 EQIATLVKKALSLGMDVISGLHFK-ISQQTEFLKIAHENGTRII  136 (338)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHHHHcCCeEEecchhh-hccCHHHHHHHHhCCCEEE
Confidence            888899999999999999986543 2334678899999999888

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.94  E-value=9.5e-06  Score=63.87  Aligned_cols=33  Identities=33%  Similarity=0.367  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||||+|. ||+||.+.|.+.+.++++++++-|+
T Consensus         1 tkigINGf-GRIGR~v~R~~~~~~~~~iv~INd~   33 (166)
T d2b4ro1           1 TKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDP   33 (166)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECT
T ss_pred             CeEEEECC-CHHHHHHHHHHhhCCCcEEEEECCC
Confidence            38999996 9999999999999999999999885

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=97.92  E-value=1e-05  Score=64.12  Aligned_cols=99  Identities=19%  Similarity=0.202  Sum_probs=59.8

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHh---cCCcEEEEEEecCCCCcchhhhhcCC-------------------CCCCcccc-
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTK---ARGMEVAGAIDSHSVGEDIGMVCDME-------------------QPLEIPVM-   91 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~---~~~~eLvg~vd~~~~g~d~g~l~g~~-------------------~~~gv~v~-   91 (220)
                      .|||||+|. ||+||.+.|.+.+   .+++++|++-|+.. -+...-++.-+                   ....++++ 
T Consensus         1 tikigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd~~~-~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~   78 (173)
T d1obfo1           1 TIRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGD-PKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDA   78 (173)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSC-HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEEC
T ss_pred             CeEEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcCCCC-hHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEe
Confidence            479999996 9999999999875   57899999987410 01111111000                   00112332 


Q ss_pred             -CCHHHHHhccccCCCccEEEEccCchhHHHHHHHHHHCCCc-EEEeCC
Q 027650           92 -SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVP  138 (220)
Q Consensus        92 -~dl~~~l~~~~~~~~~DVVIDfT~p~~~~~~~~~al~~G~~-vVigTt  138 (220)
                       .+++++-..   +.++|+|||+|-.-...+.+..-++.|.. ||+..|
T Consensus        79 ~~~p~~i~W~---~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP  124 (173)
T d1obfo1          79 NRNPAQLPWG---ALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAP  124 (173)
T ss_dssp             CSCGGGSCTT---TTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSC
T ss_pred             cCCHHHCccc---ccccceEEEecccccCHHHHHHHhccCCcceEEecC
Confidence             355555331   23688888888766666667767777755 445444

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=97.90  E-value=7.7e-06  Score=64.78  Aligned_cols=33  Identities=39%  Similarity=0.432  Sum_probs=30.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +||||+|. ||+||.+.|.+.+.|+++++++=|+
T Consensus         2 ikIgINGf-GRIGR~v~R~~l~~~~~~ivaINd~   34 (171)
T d3cmco1           2 VKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDL   34 (171)
T ss_dssp             EEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             eEEEEECC-CHHHHHHHHHHhhCCCcEEEEEcCC
Confidence            79999996 9999999999999999999999774

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.88  E-value=4.6e-05  Score=60.16  Aligned_cols=33  Identities=30%  Similarity=0.350  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc--CCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA--RGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~--~~~eLvg~vd~   69 (220)
                      |||||+|. ||+||.+.|.+.+.  +++++|++=|+
T Consensus         1 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~   35 (172)
T d1rm4a1           1 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDT   35 (172)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECT
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEEcCC
Confidence            79999996 99999999988764  44999998775

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=3.7e-05  Score=58.07  Aligned_cols=99  Identities=15%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |||+|+|+ |.||..++..+.+ .+.++..+............ .+.. ......+..+..+.+.      .+|++|.++
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~-~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~D~iii~v   71 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCK-QGHEVQGWLRVPQPYCSVNL-VETDGSIFNESLTANDPDFLA------TSDLLLVTL   71 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEEEECSSCCSEEEEEE-ECTTSCEEEEEEEESCHHHHH------TCSEEEECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHH-CCCceEEEEcCHHHhhhhcc-ccCCccccccccccchhhhhc------ccceEEEee
Confidence            79999998 9999999998876 47887765433221111111 1110 0111223334444444      799999777


Q ss_pred             CchhHHHHHHHHHH---CCCcEEEeCCCCCHH
Q 027650          115 DASTVYDNVKQATA---FGMRSVVYVPHIQLE  143 (220)
Q Consensus       115 ~p~~~~~~~~~al~---~G~~vVigTtG~~~e  143 (220)
                      .+..+.+.++.+..   .+..+|....|+..+
T Consensus        72 ka~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             cccchHHHHHhhccccCcccEEeeccCcccHH
Confidence            77666655555443   466788877788644

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.75  E-value=0.00031  Score=52.78  Aligned_cols=95  Identities=12%  Similarity=0.160  Sum_probs=63.5

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      ..|.||+|+|+.|.||+.+++.+.+ .++++.+ +|++..                   .+.++.+.      .+|.++.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~-~G~~V~~-~d~~~~-------------------~~~~~~~~------~~~~v~~   59 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRA-SGYPISI-LDREDW-------------------AVAESILA------NADVVIV   59 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHT-TTCCEEE-ECTTCG-------------------GGHHHHHT------TCSEEEE
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHH-cCCCcEe-cccccc-------------------cccchhhh------hcccccc
Confidence            3567999999669999999999876 4787764 554321                   12233332      7888887


Q ss_pred             ccCchhHHHHHHHHHHC--CCcEEEeCCCCCHHHHHHHHHHhhh
Q 027650          113 FTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDK  154 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTtG~~~e~~~~L~~aA~~  154 (220)
                      .+++....+.+...+..  .-.+|+-++....+..+++.+....
T Consensus        60 ~~~~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~  103 (152)
T d2pv7a2          60 SVPINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTG  103 (152)
T ss_dssp             CSCGGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCSS
T ss_pred             ccchhhheeeeecccccccCCceEEEecccCHHHHHHHHHHccC
Confidence            78877777777666554  2246666666777777777665433

>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Myo-inositol 1-phosphate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=0.00038  Score=57.30  Aligned_cols=135  Identities=19%  Similarity=0.197  Sum_probs=91.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc------C----------------CcEEEEEEec--CCCCcchhhhhcCC------
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA------R----------------GMEVAGAIDS--HSVGEDIGMVCDME------   83 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~------~----------------~~eLvg~vd~--~~~g~d~g~l~g~~------   83 (220)
                      +++||+|+|. |+-.+.++.-+...      +                |+|+|+++|-  .+.|+|+.+..-..      
T Consensus         1 ~kIrVaIvGv-GNcASslvqGieyyk~~~~~~~v~Glm~~~iggY~v~DIe~VaafDVD~~KVGkdlseAi~a~pN~t~~   79 (243)
T d1gr0a1           1 TEVRVAIVGV-GNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIK   79 (243)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCCC
T ss_pred             CceEEEEEcc-hHHHHHHHHHHHHHhcCCCccccccceecccCCccccceEEEEEEecCccccCCcHHHHHhcCCCCcee
Confidence            4799999997 99999999887521      1                5599999983  56888887643210      


Q ss_pred             ----CCCCcccc-----------------------CCHHHHHhccccCCCccEEEEccC---chhHHHHHHHHHHCCCcE
Q 027650           84 ----QPLEIPVM-----------------------SDLTMVLGSISQSKARAVVIDFTD---ASTVYDNVKQATAFGMRS  133 (220)
Q Consensus        84 ----~~~gv~v~-----------------------~dl~~~l~~~~~~~~~DVVIDfT~---p~~~~~~~~~al~~G~~v  133 (220)
                          ...|+.+.                       .|+-+.|.+    .++||+|.+-+   -++..-++..|+++|+.+
T Consensus        80 ~~d~p~~gv~V~~G~~LDg~~~~~~~~~~~~~~~~~dvv~~Lk~----~~~dVlvnylPvGse~A~~~YA~~al~Ag~aF  155 (243)
T d1gr0a1          80 IADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKE----AKVDVLVSYLPVGSEEADKFYAQCAIDAGVAF  155 (243)
T ss_dssp             CSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHH----TTCSEEEECCCTTCHHHHHHHHHHHHHHTCEE
T ss_pred             eCCCCCCCCEEeccCCccccchhhhcccCCCCccHHHHHHHHHh----cCCCEEEEecCCCcHHHHHHHHHHHHHcCceE
Confidence                02223221                       123344443    68999998754   345567889999999999


Q ss_pred             EEeCCCC---CHHHHHHHHHHhhhcCceEE----EcCCCcHHHHH-HHHHHHH
Q 027650          134 VVYVPHI---QLETVSALSAFCDKASMGCL----IAPTLSIGSIL-LQQAAIS  178 (220)
Q Consensus       134 VigTtG~---~~e~~~~L~~aA~~~~v~vv----iapNfS~Gv~l-l~~~a~~  178 (220)
                      |=..|-|   +++    +.+..+++|+|++    .+|| |-|+.+ +.++++.
T Consensus       156 VN~iP~fIAsdp~----w~~kF~e~glpivGDDikspn-~AgvviDaiR~aKl  203 (243)
T d1gr0a1         156 VNALPVFIASDPV----WAKKFTDARVPIVGDDIKSPN-SAGVIIDAVRAAKI  203 (243)
T ss_dssp             EECSSCCSTTSHH----HHHHHHHHTCEEEESSBCCHH-HHHHHHHHHHHHHH
T ss_pred             EecccccccCCHH----HHHHHHHcCCcEEcccccccc-cchhHHHHHHHHHH
Confidence            9999965   343    4555567899999    5666 777743 2344433

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=8e-05  Score=58.62  Aligned_cols=88  Identities=23%  Similarity=0.264  Sum_probs=54.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-------cCCHHHHHhccccCCC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKA  106 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-------~~dl~~~l~~~~~~~~  106 (220)
                      .|.||+|.||+|++|+.+++.+.+. +.++.++......   .....    ..++.+       .+++++++.      +
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~-g~~V~~~~R~~~~---~~~~~----~~~~~~~~gD~~d~~~l~~al~------~   67 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSR---LPSEG----PRPAHVVVGDVLQAADVDKTVA------G   67 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGGG---SCSSS----CCCSEEEESCTTSHHHHHHHHT------T
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEEcChhh---ccccc----ccccccccccccchhhHHHHhc------C
Confidence            3679999999999999999988864 8999988753110   00000    112221       234555564      7


Q ss_pred             ccEEEEccCc-----------hhHHHHHHHHHHCCCcEEE
Q 027650          107 RAVVIDFTDA-----------STVYDNVKQATAFGMRSVV  135 (220)
Q Consensus       107 ~DVVIDfT~p-----------~~~~~~~~~al~~G~~vVi  135 (220)
                      +|+||.+..+           ......+..+.++|++-++
T Consensus        68 ~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i  107 (205)
T d1hdoa_          68 QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVV  107 (205)
T ss_dssp             CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             CCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEE
Confidence            8999975422           1223456677788876443

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=97.71  E-value=3.2e-05  Score=60.85  Aligned_cols=32  Identities=44%  Similarity=0.486  Sum_probs=28.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |||||+|. ||+||.+.|++.. ++++++++-|.
T Consensus         1 ikigINGf-GRIGR~~~R~l~~-~~i~iv~INd~   32 (168)
T d2g82a1           1 MKVGINGF-GRIGRQVFRILHS-RGVEVALINDL   32 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-HTCCEEEEECS
T ss_pred             CEEEEECC-cHHHHHHHHHHhc-CCCEEEEECCC
Confidence            79999996 9999999998765 68999998884

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.60  E-value=0.00093  Score=51.55  Aligned_cols=120  Identities=9%  Similarity=0.110  Sum_probs=69.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC-CCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME-QPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~-~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +-+|+++|. |+||..+++.+... ++++. ++|++.  ..+.++...+ .........+.++.....   ..+|++|.+
T Consensus         2 ~~nIg~IGl-G~MG~~mA~~L~~~-G~~V~-v~dr~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ii~~   73 (176)
T d2pgda2           2 QADIALIGL-AVMGQNLILNMNDH-GFVVC-AFNRTV--SKVDDFLANEAKGTKVLGAHSLEEMVSKL---KKPRRIILL   73 (176)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHT-TCCEE-EECSST--HHHHHHHHTTTTTSSCEECSSHHHHHHHB---CSSCEEEEC
T ss_pred             CCcEEEEeE-hHHHHHHHHHHHHC-CCeEE-EEcCCH--HHHHHHHHhccccccccchhhhhhhhhhh---cccceEEEe
Confidence            347999996 99999999999874 88876 578642  2223332110 011111233344433211   367877744


Q ss_pred             cC-chhHHHHHHH---HHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcC
Q 027650          114 TD-ASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP  163 (220)
Q Consensus       114 T~-p~~~~~~~~~---al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviap  163 (220)
                      .+ ++.+.+....   .++.|. +||-++..++++..++.+..++.|+..+=+|
T Consensus        74 ~~~~~~v~~v~~~l~~~~~~g~-iiid~sT~~~~~~~~~~~~~~~~g~~~ldap  126 (176)
T d2pgda2          74 VKAGQAVDNFIEKLVPLLDIGD-IIIDGGNSEYRDTMRRCRDLKDKGILFVGSG  126 (176)
T ss_dssp             SCTTHHHHHHHHHHHHHCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCchHHHHHHHHHHHhccccCc-EEEecCcchhHHHHHHHHHHHhcCCceeccc
Confidence            33 3344443333   334454 5556666677777888888888888777433

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.59  E-value=9.2e-05  Score=57.94  Aligned_cols=126  Identities=16%  Similarity=0.091  Sum_probs=71.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhh--------hcCC-CCCCccccCCHHHHHhccccCCC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMV--------CDME-QPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l--------~g~~-~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      |||+|+|+ |.||..++..+... +.++. ++.+...-+-+..+        .+.. ....+..++|+++++.      +
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~-g~~V~-l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~   71 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDN-GNEVR-IWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE------N   71 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHH-CCEEE-EECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT------T
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEE-EEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHh------c
Confidence            79999997 99999999988754 44544 33321000001111        1100 0122345788999986      7


Q ss_pred             ccEEEEccCchhHHHHHHHHHH--CCCcEEEeCCCCCHH------HHHHHHHHhhh--cCceEEEcCCCcHHHH
Q 027650          107 RAVVIDFTDASTVYDNVKQATA--FGMRSVVYVPHIQLE------TVSALSAFCDK--ASMGCLIAPTLSIGSI  170 (220)
Q Consensus       107 ~DVVIDfT~p~~~~~~~~~al~--~G~~vVigTtG~~~e------~~~~L~~aA~~--~~v~vviapNfS~Gv~  170 (220)
                      +|+||..+++....+.+.....  .+.++|+-+.|+.+.      -.+.+++....  ....++--|||+-.+.
T Consensus        72 ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~  145 (180)
T d1txga2          72 AEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVA  145 (180)
T ss_dssp             CSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHH
T ss_pred             cchhhcccchhhhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHH
Confidence            9999966666666666655433  456777777775211      11223333221  1234444599988763

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.56  E-value=0.0004  Score=52.81  Aligned_cols=107  Identities=17%  Similarity=0.115  Sum_probs=63.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEecCCCCcchhhhhcCCCCCCc--cccCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAIDSHSVGEDIGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |.||+|+|+ |.||..+++.+.+. ...++.+ +|++.  .......    ..++  ...++.++...     ..+|+||
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~-~D~~~--~~~~~a~----~~~~~~~~~~~~~~~~~-----~~~dlIi   67 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYG-YDINP--ESISKAV----DLGIIDEGTTSIAKVED-----FSPDFVM   67 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEE-ECSCH--HHHHHHH----HTTSCSEEESCGGGGGG-----TCCSEEE
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEE-EECCh--HHHHHHH----Hhhcchhhhhhhhhhhc-----ccccccc
Confidence            557999997 99999999998754 4567665 57642  1111111    1222  23455555544     3789999


Q ss_pred             EccCchhHHHHHHHHHH--CCCcEEEeCCCCCHHHHHHHHHHhhh
Q 027650          112 DFTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDK  154 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~--~G~~vVigTtG~~~e~~~~L~~aA~~  154 (220)
                      -+++|+...+.+.....  ..-.+|+-+.+-...-.+.+++...+
T Consensus        68 la~p~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~  112 (171)
T d2g5ca2          68 LSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK  112 (171)
T ss_dssp             ECSCHHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred             ccCCchhhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence            77788777766655443  23356665555444444455554333

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.54  E-value=0.00026  Score=55.61  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=28.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTK--ARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd~   69 (220)
                      ||||+|. ||+||.+.|.+.+  .+++++|++=|.
T Consensus         2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~   35 (169)
T d1hdgo1           2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDL   35 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECS
T ss_pred             EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccC
Confidence            8999996 9999999998875  678999998774

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.50  E-value=0.00054  Score=52.16  Aligned_cols=93  Identities=15%  Similarity=0.120  Sum_probs=56.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh----------cCC-CCCCccccCCHHHHHhccccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC----------DME-QPLEIPVMSDLTMVLGSISQS  104 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~----------g~~-~~~gv~v~~dl~~~l~~~~~~  104 (220)
                      .||+|+|+ |.||..++..+... +.++. ++++..  .....+.          +.. ......+++|+++++.     
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~-G~~V~-~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----   71 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALK-GQSVL-AWDIDA--QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK-----   71 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSCH--HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT-----
T ss_pred             CEEEEECc-cHHHHHHHHHHHHC-CCEEE-EEECCH--HHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc-----
Confidence            58999998 99999999988874 78776 556421  1111110          000 0112344678999986     


Q ss_pred             CCccEEEEccCchhHHHHHHHHH---HCCCcEEEeCCCC
Q 027650          105 KARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHI  140 (220)
Q Consensus       105 ~~~DVVIDfT~p~~~~~~~~~al---~~G~~vVigTtG~  140 (220)
                       ++|++|.++++..+.+.+....   ..+.. |+..+|.
T Consensus        72 -~aD~iii~v~~~~~~~~~~~i~~~l~~~~~-iv~~~g~  108 (184)
T d1bg6a2          72 -DADVILIVVPAIHHASIAANIASYISEGQL-IILNPGA  108 (184)
T ss_dssp             -TCSEEEECSCGGGHHHHHHHHGGGCCTTCE-EEESSCC
T ss_pred             -CCCEEEEEEchhHHHHHHHHhhhccCCCCE-EEEeCCC
Confidence             7999997776666555544443   33554 4455543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.49  E-value=0.00041  Score=53.48  Aligned_cols=120  Identities=12%  Similarity=0.120  Sum_probs=70.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCC----CCCCccccCCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDME----QPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~----~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |||+|+|. |+||..+++.+.+. ++++. ++|++.  .....+...+    .........+.+.++..+   ..++.++
T Consensus         2 MkIGvIGl-G~MG~~ma~~L~~~-G~~V~-~~dr~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   73 (178)
T d1pgja2           2 MDVGVVGL-GVMGANLALNIAEK-GFKVA-VFNRTY--SKSEEFMKANASAPFAGNLKAFETMEAFAASL---KKPRKAL   73 (178)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHT-TCCEE-EECSSH--HHHHHHHHHTTTSTTGGGEEECSCHHHHHHHB---CSSCEEE
T ss_pred             CEEEEEee-hHHHHHHHHHHHHC-CCeEE-EEECCH--HHHHHHHHcCCccccccchhhhhhhhHHHHhc---ccceEEE
Confidence            69999996 99999999999874 78875 578632  1122221100    011223345666665432   2556666


Q ss_pred             EccCchhHH----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          112 DFTDASTVY----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       112 DfT~p~~~~----~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      +...+....    ..+...+..|.-+| -++-.++++..++.+..++.++..+-+|=
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~iii-~~st~~~~~~~~~~~~l~~~~~~~ldapv  129 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGDILV-DTGNAHFKDQGRRAQQLEAAGLRFLGMGI  129 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEE-ECCCCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             EeecCcchhhhhhhhhhhhccccceec-ccCccchhHHHHHHHHHhhcceeEecccc
Confidence            555554332    34444555565444 45555566677777777777777765543

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=97.39  E-value=0.0002  Score=56.17  Aligned_cols=31  Identities=35%  Similarity=0.458  Sum_probs=27.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ||||+|. ||+||.+.|.+.+. ++++|++-|+
T Consensus         2 kIgINGf-GRIGR~~~R~~~~~-~~~ivaINd~   32 (169)
T d1dssg1           2 KIGINGF-GRIGRLVLRAALEM-GAQVVAVNDP   32 (169)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHH-TCCEEEEECT
T ss_pred             eEEEECC-cHHHHHHHHHHHhC-CCcEEEECCC
Confidence            8999996 99999999998876 6899999885

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.31  E-value=0.0014  Score=48.12  Aligned_cols=119  Identities=13%  Similarity=0.261  Sum_probs=66.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |||.|+|+ |++|+.+++.+.+ .+.+++ ++|.+.  +.+..+..   ..++.+ +   .|.+-+.. .+ -.++|.++
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~-~g~~v~-vid~d~--~~~~~~~~---~~~~~vi~Gd~~~~~~l~~-~~-i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSE-KGHDIV-LIDIDK--DICKKASA---EIDALVINGDCTKIKTLED-AG-IEDADMYI   70 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHHH---HCSSEEEESCTTSHHHHHH-TT-TTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHH-CCCCcc-eecCCh--hhhhhhhh---hhhhhhccCcccchhhhhh-cC-hhhhhhhc
Confidence            79999997 9999999998876 477776 456531  11222211   123333 2   23333221 10 13689888


Q ss_pred             EccCchhH-HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          112 DFTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       112 DfT~p~~~-~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      -.|..+.. ......+.+.|.+-++... .+++..+.+    ++.|+..++.|.+-.+-
T Consensus        71 ~~t~~d~~N~~~~~~~k~~~~~~iI~~~-~~~~~~~~l----~~~G~d~vi~p~~~~a~  124 (132)
T d1lssa_          71 AVTGKEEVNLMSSLLAKSYGINKTIARI-SEIEYKDVF----ERLGVDVVVSPELIAAN  124 (132)
T ss_dssp             ECCSCHHHHHHHHHHHHHTTCCCEEEEC-SSTTHHHHH----HHTTCSEEECHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHcCCceEEEEe-cCHHHHHHH----HHCCCCEEECHHHHHHH
Confidence            65554433 2233444566766555433 234443434    45678888888754443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.29  E-value=0.0014  Score=51.58  Aligned_cols=123  Identities=19%  Similarity=0.151  Sum_probs=71.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC-------------CCcchhhhh-cCCCCCCccccCCHHHHHhcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS-------------VGEDIGMVC-DMEQPLEIPVMSDLTMVLGSI  101 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~-------------~g~d~g~l~-g~~~~~gv~v~~dl~~~l~~~  101 (220)
                      |||+|+|+ |++|-.++..+++ .+.+++ ++|.+.             ......+++ ..........++|+++++.  
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~-~g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~--   75 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSA-RGHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVL--   75 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHH-TTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHH--
T ss_pred             CEEEEECC-CHhHHHHHHHHHh-CCCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHh--
Confidence            79999996 9999999887765 588987 577421             001111111 0000123455788888886  


Q ss_pred             ccCCCccEEEEccC-c------------hhHHHHHHHHHH---CCCcEEEeCC---CCCHHHHHHHHHH-hhh---cCce
Q 027650          102 SQSKARAVVIDFTD-A------------STVYDNVKQATA---FGMRSVVYVP---HIQLETVSALSAF-CDK---ASMG  158 (220)
Q Consensus       102 ~~~~~~DVVIDfT~-p------------~~~~~~~~~al~---~G~~vVigTt---G~~~e~~~~L~~a-A~~---~~v~  158 (220)
                          ++|+++.+.+ |            ..+.+.+...++   .+.-+|+.+|   |.+.+....+.+- ...   .+..
T Consensus        76 ----~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~  151 (202)
T d1mv8a2          76 ----DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFG  151 (202)
T ss_dssp             ----TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBE
T ss_pred             ----hCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhcccccccccccc
Confidence                7898885542 2            123333444444   3445777776   6776665554333 221   2357


Q ss_pred             EEEcCCCcH
Q 027650          159 CLIAPTLSI  167 (220)
Q Consensus       159 vviapNfS~  167 (220)
                      +.++|-|-.
T Consensus       152 ~~~~PE~~~  160 (202)
T d1mv8a2         152 VGTNPEFLR  160 (202)
T ss_dssp             EEECCCCCC
T ss_pred             chhhhhhhc
Confidence            888888653

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.14  E-value=0.00064  Score=53.44  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=53.6

Q ss_pred             cccccccccCCccccccCCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc
Q 027650           12 MHHISQNVKAKRFISCSTNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM   91 (220)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~   91 (220)
                      +++..+++|+.........+.-...+|+|+|. |++|+.+++.+... ++++.+ +|+..  .+          .....+
T Consensus        19 i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG~-G~IG~~va~~l~~~-g~~v~~-~d~~~--~~----------~~~~~~   83 (181)
T d1qp8a1          19 IIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGL-GEIGTRVGKILAAL-GAQVRG-FSRTP--KE----------GPWRFT   83 (181)
T ss_dssp             HHHHHHHHHTTCCCCCSCCCCCTTCEEEEESC-STHHHHHHHHHHHT-TCEEEE-ECSSC--CC----------SSSCCB
T ss_pred             HHHHHHHHHcCCCCCCCCCCcccCceEEEecc-ccccccceeeeecc-cccccc-ccccc--cc----------cceeee
Confidence            44445566655443332334445578999997 99999999988764 888775 46532  11          112346


Q ss_pred             CCHHHHHhccccCCCccEEEEcc
Q 027650           92 SDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        92 ~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +++++++.      .+|+|+-..
T Consensus        84 ~~l~ell~------~sDiv~~~~  100 (181)
T d1qp8a1          84 NSLEEALR------EARAAVCAL  100 (181)
T ss_dssp             SCSHHHHT------TCSEEEECC
T ss_pred             echhhhhh------ccchhhccc
Confidence            78999996      799988654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.13  E-value=0.0011  Score=50.13  Aligned_cols=111  Identities=15%  Similarity=0.079  Sum_probs=63.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc-C
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT-D  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT-~  115 (220)
                      ||+++|. |+||..+++.+.+ .+..++  +++..  ....++..   ..+. .....+.+.       ++|++|-.- .
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~-~g~~~~--~~~~~--~~~~~~~~---~~~~-~~~~~~~~~-------~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLAR-RFPTLV--WNRTF--EKALRHQE---EFGS-EAVPLERVA-------EARVIFTCLPT   64 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHT-TSCEEE--ECSST--HHHHHHHH---HHCC-EECCGGGGG-------GCSEEEECCSS
T ss_pred             eEEEEeH-HHHHHHHHHHHHh-CCCEEE--EeCCH--HHHHHHHH---HcCC-ccccccccc-------ceeEEEecccc
Confidence            7999996 9999999999975 355543  34321  11112211   1111 123333332       467666322 3


Q ss_pred             chhHHHHHHHHHHC--CCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCC
Q 027650          116 ASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT  164 (220)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapN  164 (220)
                      +..+.......+..  .-.+++-++..++++..++.+.+++.|+.++=+|=
T Consensus        65 ~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapV  115 (156)
T d2cvza2          65 TREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPV  115 (156)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCE
T ss_pred             hhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccc
Confidence            33333333333322  23455566677888889999998888998886653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.0018  Score=46.92  Aligned_cols=39  Identities=28%  Similarity=0.493  Sum_probs=30.5

Q ss_pred             CCCCCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           29 TNPPQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        29 ~~~~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ++......||+|+|+ |..|+.++.+..+. ++++. ++|+.
T Consensus         5 ~~~~~~~~kigIlGg-GQL~rMla~aA~~l-G~~v~-v~d~~   43 (111)
T d1kjqa2           5 TALRPAATRVMLLGS-GELGKEVAIECQRL-GVEVI-AVDRY   43 (111)
T ss_dssp             CTTSTTCCEEEEESC-SHHHHHHHHHHHTT-TCEEE-EEESS
T ss_pred             CCCCCCCCEEEEEeC-CHHHHHHHHHHHHC-CCEEE-EEcCC
Confidence            444556679999997 99999999987765 88885 46764

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.08  E-value=3.3e-05  Score=58.31  Aligned_cols=89  Identities=8%  Similarity=-0.012  Sum_probs=48.0

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCch
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS  117 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p~  117 (220)
                      |+++|+ |+||+.+++.+.+  +.+++.+++++.  ..+.++..   ..+. .+.+++++..      .+|+||-+.+++
T Consensus         2 IgfIG~-G~mg~~l~~~L~~--~~~~~~v~~R~~--~~~~~l~~---~~~~-~~~~~~~~~~------~~DiVil~v~d~   66 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKD--RYEIGYILSRSI--DRARNLAE---VYGG-KAATLEKHPE------LNGVVFVIVPDR   66 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHH---HTCC-CCCSSCCCCC---------CEEECSCTT
T ss_pred             EEEEeC-cHHHHHHHHHHHh--CCCEEEEEeCCh--hhhcchhh---cccc-cccchhhhhc------cCcEEEEeccch
Confidence            689996 9999999997743  566666777642  22233332   2232 3446666654      789999666665


Q ss_pred             hHHHHHHHHHHCCCcEEEeCC-CCCH
Q 027650          118 TVYDNVKQATAFGMRSVVYVP-HIQL  142 (220)
Q Consensus       118 ~~~~~~~~al~~G~~vVigTt-G~~~  142 (220)
                      ...+.+......|.-+| -+. +.+.
T Consensus        67 ~i~~v~~~l~~~~~ivi-~~s~~~~~   91 (153)
T d2i76a2          67 YIKTVANHLNLGDAVLV-HCSGFLSS   91 (153)
T ss_dssp             THHHHHTTTCCSSCCEE-ECCSSSCG
T ss_pred             hhhHHHhhhcccceeee-ecccchhh
Confidence            55555544333455444 455 4443

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.08  E-value=0.0016  Score=54.58  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=29.2

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      ++..|||.|+|++|-+|+.+++.+.+ .+.+++++
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~-~g~~V~~~   45 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKH-EGHYVIAS   45 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHH-CcCEEEEE
Confidence            35678999999999999999999887 47888864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0011  Score=55.19  Aligned_cols=94  Identities=18%  Similarity=0.166  Sum_probs=55.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCC----CCCccccCCHHHHHhccccCCCccEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQ----PLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~----~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      |||.|+|++|.+|+.+++.+.+....++.++ |....  ....+.....    ..++....++.+...     .++|+||
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~l-d~~~~--~~~~~~~~~~~~~i~~Di~~~~~~~~~~~-----~~~d~Vi   72 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGL-DIGSD--AISRFLNHPHFHFVEGDISIHSEWIEYHV-----KKCDVVL   72 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEE-ESCCG--GGGGGTTCTTEEEEECCTTTCSHHHHHHH-----HHCSEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEE-eCCCc--chhhhccCCCeEEEECccCChHHHHHHHH-----hCCCccc
Confidence            6999999999999999999987766787765 53211  1111111000    011222223344333     2799999


Q ss_pred             EccCch------------------hHHHHHHHHHHCCCcEEEeC
Q 027650          112 DFTDAS------------------TVYDNVKQATAFGMRSVVYV  137 (220)
Q Consensus       112 DfT~p~------------------~~~~~~~~al~~G~~vVigT  137 (220)
                      .+....                  .....+..+.+.++..++-.
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~s  116 (342)
T d2blla1          73 PLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS  116 (342)
T ss_dssp             ECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cccccccccccccCCccccccccccccccccccccccccccccc
Confidence            876421                  13345677888888877633

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.98  E-value=0.00087  Score=51.49  Aligned_cols=89  Identities=18%  Similarity=0.202  Sum_probs=57.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCC--ccccCCHHHHHhccccCCCccEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLE--IPVMSDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~g--v~v~~dl~~~l~~~~~~~~~DVV  110 (220)
                      .+..||+|+|+ |.||+.+++.+... +..-+-++.++.  +.+.+++.   .++  +..++++.+.+.      ++|+|
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~-g~~~i~v~nRt~--~ka~~l~~---~~~~~~~~~~~~~~~l~------~~Div   88 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDR-GVRAVLVANRTY--ERAVELAR---DLGGEAVRFDELVDHLA------RSDVV   88 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHH-CCSEEEEECSSH--HHHHHHHH---HHTCEECCGGGHHHHHH------TCSEE
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhc-CCcEEEEEcCcH--HHHHHHHH---hhhcccccchhHHHHhc------cCCEE
Confidence            34569999997 99999999998874 666566666641  22333332   222  233678888876      79999


Q ss_pred             EEccC-ch--hHHHHHHHHHHC---CCcEE
Q 027650          111 IDFTD-AS--TVYDNVKQATAF---GMRSV  134 (220)
Q Consensus       111 IDfT~-p~--~~~~~~~~al~~---G~~vV  134 (220)
                      |-+|. |.  ...++++..++.   +.|++
T Consensus        89 i~atss~~~ii~~~~i~~~~~~r~~~~~~~  118 (159)
T d1gpja2          89 VSATAAPHPVIHVDDVREALRKRDRRSPIL  118 (159)
T ss_dssp             EECCSSSSCCBCHHHHHHHHHHCSSCCCEE
T ss_pred             EEecCCCCccccHhhhHHHHHhcccCCCeE
Confidence            97664 33  336777766643   45543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.93  E-value=0.00046  Score=55.37  Aligned_cols=59  Identities=25%  Similarity=0.397  Sum_probs=41.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |||.|+|++|-+|+.+++.+.+ .+.++++. |+..  -|            +.-..++++++..    .++|+||.+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~-~g~~Vi~~-~r~~--~D------------~~d~~~~~~~l~~----~~~d~vih~a   60 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKG-KNVEVIPT-DVQD--LD------------ITNVLAVNKFFNE----KKPNVVINCA   60 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTT-SSEEEEEE-CTTT--CC------------TTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-CCCEEEEe-echh--cc------------CCCHHHHHHHHHH----cCCCEEEeec
Confidence            7999999999999999999875 58998874 4321  01            1113345566653    4789999875

>d1vjpa1 c.2.1.3 (A:0-209,A:317-381) Hypothetical protein TM1419 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1419
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.0034  Score=52.50  Aligned_cols=137  Identities=15%  Similarity=0.199  Sum_probs=80.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHh--------------------cCCcEEEEEEec--CCCCcchhhhhcC----------
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTK--------------------ARGMEVAGAIDS--HSVGEDIGMVCDM----------   82 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~--------------------~~~~eLvg~vd~--~~~g~d~g~l~g~----------   82 (220)
                      |+||+|+|. |..++.++.-+..                    .+|.+++|++|-  ...|+++.+..-.          
T Consensus         2 mIrV~ivG~-GnvAStlv~Gl~~~k~g~~~~~G~p~~~~~~~~~~Dievvgg~DId~~kvgk~l~eai~~~~n~~~~~~~   80 (275)
T d1vjpa1           2 MVKVLILGQ-GYVASTFVAGLEKLRKGEIEPYGVPLARELPIGFEDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTS   80 (275)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHTTSSCCTTCTTTTCSSSCGGGEEEEEEEECBTTTTTSBHHHHHHHHCTTCCCCSS
T ss_pred             ceEEEEeec-cHHHHHHHHHHHHHHcCCCCCcCcccccccCCCCCCcEEEEEecCCcchhHHHHHHHHHhchhhhhhhhc
Confidence            899999998 9999998876531                    136789999994  4456665432110          


Q ss_pred             ----------C-------CCCCccccCCHHHHHhccc---cCCCccEEEEccC-----c-h------------------h
Q 027650           83 ----------E-------QPLEIPVMSDLTMVLGSIS---QSKARAVVIDFTD-----A-S------------------T  118 (220)
Q Consensus        83 ----------~-------~~~gv~v~~dl~~~l~~~~---~~~~~DVVIDfT~-----p-~------------------~  118 (220)
                                +       ...+.....++.+.++.+.   ++.+.||||..++     | .                  +
T Consensus        81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~e~v~~i~~di~~~~~~Vvvn~asTE~ylpvgs~~~~~~a~~~~~~~~i~a  160 (275)
T d1vjpa1          81 DPEIRKGVHLGSVRNLPIEAEGLEDSMTLKEAVDTLVKEWTELDPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLTA  160 (275)
T ss_dssp             CCBCEECCCTTTTTTSSCCBCCGGGSSCHHHHHHHHHHHHHHHCCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCCH
T ss_pred             ccCcccceecCccccccccccccccccchHHHHHHHHHHHHhcchhheeecccccccCCCCcHHHHHHHhhccCccccCh
Confidence                      0       0000111112222222110   1236789997432     1 1                  2


Q ss_pred             HHHHHHHHH-----HCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc--HHHHHHHH
Q 027650          119 VYDNVKQAT-----AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQ  174 (220)
Q Consensus       119 ~~~~~~~al-----~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS--~Gv~ll~~  174 (220)
                      ..-++.+|+     +.|++.|-++|-+... ...+.++++++|+|++= --|.  +|..++.+
T Consensus       161 S~~YA~AAL~~~~~~aG~~fVN~~P~~ia~-~Pal~ela~~~gvPi~G-dD~Ksq~G~Tiv~~  221 (275)
T d1vjpa1         161 TQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENNLVVFG-DDGSPALGGLLVDL  221 (275)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEEC-SSBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhccCCceeEeccCccccC-CHHHHHHHHHcCCcEEc-ccchhhhhHHHHHH
Confidence            233445565     8999999999966432 14688999998888771 1234  48877744

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=96.85  E-value=0.0015  Score=55.50  Aligned_cols=74  Identities=18%  Similarity=0.303  Sum_probs=45.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-------cCCHHHHHhccccCCCcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-------MSDLTMVLGSISQSKARA  108 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-------~~dl~~~l~~~~~~~~~D  108 (220)
                      |||.|+|++|-+|+.+++.|.+. +.+++.++|+.........+.......++..       ..+++.++..    .++|
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~-g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~----~~~d   75 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKN-TQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQ----YQPD   75 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHH-CSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHH----HCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHh----CCCC
Confidence            69999999999999999999875 6677778885221211222211111223332       1233444442    3799


Q ss_pred             EEEEcc
Q 027650          109 VVIDFT  114 (220)
Q Consensus       109 VVIDfT  114 (220)
                      +||.++
T Consensus        76 ~VihlA   81 (361)
T d1kewa_          76 AVMHLA   81 (361)
T ss_dssp             EEEECC
T ss_pred             EEEECc
Confidence            999985

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0026  Score=44.03  Aligned_cols=31  Identities=23%  Similarity=0.212  Sum_probs=25.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||+|+|. |+.|+.+++.+.+. +.++.+ +|.
T Consensus         6 K~v~ViGl-G~sG~s~a~~L~~~-g~~v~~-~D~   36 (93)
T d2jfga1           6 KNVVIIGL-GLTGLSCVDFFLAR-GVTPRV-MDT   36 (93)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHT-TCCCEE-EES
T ss_pred             CEEEEEeE-CHHHHHHHHHHHHC-CCEEEE-eeC
Confidence            48999997 99999999988775 777754 564

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.75  E-value=0.0061  Score=48.23  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=30.4

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      +++.||.|+|++|.+|+.+++.+.+. +.++.++..
T Consensus         1 ~~kkKILVtGatG~iG~~l~~~L~~~-G~~V~~l~R   35 (307)
T d1qyca_           1 GSRSRILLIGATGYIGRHVAKASLDL-GHPTFLLVR   35 (307)
T ss_dssp             CCCCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEEC
Confidence            36789999999999999999999874 889887664

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.74  E-value=0.00049  Score=52.97  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=27.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAI   67 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~v   67 (220)
                      +|.+|.|.|++|.+|+.+++.+.+. ..+.+++..
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~   36 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV   36 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEc
Confidence            5789999999999999999999865 346666654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0015  Score=51.45  Aligned_cols=100  Identities=14%  Similarity=0.163  Sum_probs=58.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-----cchh----hhhcCCCC--------------CCccccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-----EDIG----MVCDMEQP--------------LEIPVMS   92 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-----~d~g----~l~g~~~~--------------~gv~v~~   92 (220)
                      -||+|+|+ |.||+.++..+.. .|++++ ++|++...     +.+.    .+...+..              ..+..++
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~-~G~~V~-l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~   81 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAA-TGHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST   81 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHH-TTCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred             EEEEEECc-CHHHHHHHHHHHh-CCCcEE-EEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence            38999997 9999999987775 588876 67753110     0010    01100000              1234567


Q ss_pred             CHHHHHhccccCCCccEEEEccCch-----hHHHHHHHHHHCCCcEEEeCCCCCHHH
Q 027650           93 DLTMVLGSISQSKARAVVIDFTDAS-----TVYDNVKQATAFGMRSVVYVPHIQLET  144 (220)
Q Consensus        93 dl~~~l~~~~~~~~~DVVIDfT~p~-----~~~~~~~~al~~G~~vVigTtG~~~e~  144 (220)
                      |+++++.      ++|.||++-+-+     .++..+...+..+..+...|++++..+
T Consensus        82 d~~~a~~------~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~  132 (192)
T d1f0ya2          82 DAASVVH------STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS  132 (192)
T ss_dssp             CHHHHTT------SCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHH
T ss_pred             hhHhhhc------ccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccch
Confidence            8887775      789999765432     223333334455555566566777644

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0057  Score=48.44  Aligned_cols=94  Identities=18%  Similarity=0.078  Sum_probs=54.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCCCCcchhhhhcCCCCCCccc--cCCHHHHHhccccCCCccEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHSVGEDIGMVCDMEQPLEIPV--MSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~~g~d~g~l~g~~~~~gv~v--~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      +.||.|.|+||.+|+.+++.+.+...+ ++.++..+.. ..+.....    .....+  +.+++++...   ..++|++|
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~-~~~~~~~~----~i~~~~~D~~~~~~~~~~---~~~~d~vi   85 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL-TFDEEAYK----NVNQEVVDFEKLDDYASA---FQGHDVGF   85 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC-CCCSGGGG----GCEEEECCGGGGGGGGGG---GSSCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChh-hhcccccc----eeeeeeeccccccccccc---cccccccc
Confidence            368999999999999999999887664 6776654321 11111111    111111  2233333322   13799998


Q ss_pred             EccCc---------------hhHHHHHHHHHHCCCcEEEe
Q 027650          112 DFTDA---------------STVYDNVKQATAFGMRSVVY  136 (220)
Q Consensus       112 DfT~p---------------~~~~~~~~~al~~G~~vVig  136 (220)
                      .+...               ......++.|.+.|+.-++-
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~  125 (232)
T d2bkaa1          86 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNL  125 (232)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccccccccccchhhhhhhcccccceeeecccccCcccccc
Confidence            65321               12234667888999885543

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.64  E-value=0.0091  Score=45.47  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~   69 (220)
                      |.||+|.|+||-+|+...+.+.++|+ ++|+++...
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~   37 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTAN   37 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEES
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeC
Confidence            57999999999999999999998875 999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.004  Score=47.18  Aligned_cols=120  Identities=12%  Similarity=0.081  Sum_probs=63.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (220)
                      +|+|+|+ |.+|...+..+.. -+.+.++ ++....-.+...-+|   ...+..+.+.+.....   ...+|++||++..
T Consensus        33 ~VlI~Ga-G~vG~~a~qlak~-~Ga~~i~-~~~~~~~~~~a~~lG---ad~~i~~~~~~~~~~~---~~~~D~vid~~g~  103 (168)
T d1uufa2          33 KVGVVGI-GGLGHMGIKLAHA-MGAHVVA-FTTSEAKREAAKALG---ADEVVNSRNADEMAAH---LKSFDFILNTVAA  103 (168)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTCEEEE-EESSGGGHHHHHHHT---CSEEEETTCHHHHHTT---TTCEEEEEECCSS
T ss_pred             EEEEecc-chHHHHHHHHhhc-ccccchh-hccchhHHHHHhccC---CcEEEECchhhHHHHh---cCCCceeeeeeec
Confidence            7999997 9999999887765 5888886 443221112211122   1122223444433321   1369999999864


Q ss_pred             h-hHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650          117 S-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI  167 (220)
Q Consensus       117 ~-~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~  167 (220)
                      . .....+..+...|.-+++|.++-.........-..+  ++.+.-+-+++.
T Consensus       104 ~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k--~~~i~Gs~~~~~  153 (168)
T d1uufa2         104 PHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMK--RRAIAGSMIGGI  153 (168)
T ss_dssp             CCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTT--TCEEEECCSCCH
T ss_pred             chhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHC--CcEEEEEeecCH
Confidence            4 444444444455677777765322211111122233  377776655554

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.005  Score=47.06  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=31.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARG-MEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~vd~   69 (220)
                      |.||+|.|+||-+|+...+.+.++|+ ++++++...
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~   36 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAG   36 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEES
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            66899999999999999999999875 899999874

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0051  Score=51.11  Aligned_cols=31  Identities=19%  Similarity=0.358  Sum_probs=27.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      |||.|+|++|-+|+.+++.+.+. +.+++++.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~-g~~V~~~d   31 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEE
Confidence            79999999999999999999875 78988853

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=96.55  E-value=0.00075  Score=54.22  Aligned_cols=62  Identities=6%  Similarity=0.111  Sum_probs=38.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |||.|.|++|-+|+.+++.+.+. + +++++..+..      .+     ..++.-...+++++..    .++|+||.+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~-g-~~v~~~~~~~------~~-----~~Dl~~~~~~~~~i~~----~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPV-G-NLIALDVHSK------EF-----CGDFSNPKGVAETVRK----LRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTT-S-EEEEECTTCS------SS-----CCCTTCHHHHHHHHHH----HCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-C-CEEEEECCCc------cc-----cCcCCCHHHHHHHHHH----cCCCEEEEec
Confidence            79999999999999999988653 3 4554332211      00     0111112344555553    3789999975

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.51  E-value=0.0064  Score=48.69  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=29.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .|.||.|+|+||.+|+.+++.+.+. +.+++++..+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~-G~~V~~~~R~   36 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRP   36 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECC
Confidence            4679999999999999999998875 7899877653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.45  E-value=0.0022  Score=48.60  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=42.0

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecCC---CC--cchhhhhcCCCCCCccccCCHHHHHhccccCCC
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSHS---VG--EDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~~---~g--~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      ..++||+|+|+ |++|..++-.+...+-. ||+ ++|.+.   .|  .|+...... .........|++++       .+
T Consensus         3 ~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elv-L~D~~~~~~~g~a~Dl~~a~~~-~~~~~~~~~d~~~~-------~~   72 (146)
T d1ez4a1           3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFV-IVDVVKDRTKGDALDLEDAQAF-TAPKKIYSGEYSDC-------KD   72 (146)
T ss_dssp             TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHGGGGG-SCCCEEEECCGGGG-------TT
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEE-EeecccchhHHHHHHHhccccc-cCCceEeeccHHHh-------cc
Confidence            34679999997 99999999888876544 544 678532   11  122211111 11223335577654       27


Q ss_pred             ccEEEEc
Q 027650          107 RAVVIDF  113 (220)
Q Consensus       107 ~DVVIDf  113 (220)
                      +|+||..
T Consensus        73 adivvit   79 (146)
T d1ez4a1          73 ADLVVIT   79 (146)
T ss_dssp             CSEEEEC
T ss_pred             ccEEEEe
Confidence            8988854

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0044  Score=51.19  Aligned_cols=32  Identities=19%  Similarity=0.233  Sum_probs=27.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      +.||.|.|++|-+|+.+++.+.+ .+.+++++.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~-~g~~V~~~d   32 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMM-DGHEVTVVD   32 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHH-CcCEEEEEe
Confidence            46999999999999999999987 489998853

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=96.39  E-value=0.0033  Score=51.26  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=26.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      ||.|.|++|-+|+.+++.+.+. +.+++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~-g~~V~~i   30 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQ-GIDLIVF   30 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-cCEEEEE
Confidence            8999999999999999999875 8999884

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.33  E-value=0.0029  Score=48.90  Aligned_cols=100  Identities=16%  Similarity=0.129  Sum_probs=56.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC-CHHHHHhccccCCCccEEEEccC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS-DLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~-dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      +|+|+|+ |.+|...+..+... +..-+.++|+...-.+..+-.|.....+..-.+ ......... ....+|++||++-
T Consensus        31 ~VlV~G~-G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~-~~~G~d~vie~~G  107 (174)
T d1e3ia2          31 TCAVFGL-GCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITEL-TAGGVDYSLDCAG  107 (174)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHH-HTSCBSEEEESSC
T ss_pred             EEEEECC-ChHHHHHHHHHHHh-CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhh-hcCCCcEEEEecc
Confidence            7999997 99999998877654 776666777642112222222211000000111 122222110 1247899999987


Q ss_pred             chhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .....+....+++.  |.-+++|.++
T Consensus       108 ~~~~~~~a~~~~~~g~G~~v~vG~~~  133 (174)
T d1e3ia2         108 TAQTLKAAVDCTVLGWGSCTVVGAKV  133 (174)
T ss_dssp             CHHHHHHHHHTBCTTTCEEEECCCSS
T ss_pred             cchHHHHHHHHhhcCCeEEEecCCCC
Confidence            66666666666543  6888888763

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.31  E-value=0.0033  Score=49.74  Aligned_cols=64  Identities=19%  Similarity=0.156  Sum_probs=45.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -.+|+|+|+ |++|+.+++.+... ++++.+ +|+... .+...      ..++..++++++++.      .+|+|+...
T Consensus        49 gktvgIiG~-G~IG~~va~~l~~f-g~~v~~-~d~~~~-~~~~~------~~~~~~~~~l~~ll~------~sD~i~~~~  112 (193)
T d1mx3a1          49 GETLGIIGL-GRVGQAVALRAKAF-GFNVLF-YDPYLS-DGVER------ALGLQRVSTLQDLLF------HSDCVTLHC  112 (193)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTT-TCEEEE-ECTTSC-TTHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             CceEEEecc-ccccccceeeeecc-ccceee-ccCccc-ccchh------hhccccccchhhccc------cCCEEEEee
Confidence            358999997 99999999998765 899885 565321 11211      124455779999997      699888544

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.30  E-value=0.0048  Score=43.40  Aligned_cols=90  Identities=9%  Similarity=0.074  Sum_probs=54.7

Q ss_pred             CCCCCCceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc
Q 027650           30 NPPQSNIKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        30 ~~~~~~ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      ++...+.||=++|. |++|.. +++.+.+ .++++.| .|... ......+.    ..|+.++...+...-     .++|
T Consensus         3 ~~~~~~~~ihfiGi-gG~GMs~LA~~L~~-~G~~VsG-SD~~~-~~~~~~L~----~~Gi~v~~g~~~~~i-----~~~d   69 (96)
T d1p3da1           3 PEMRRVQQIHFIGI-GGAGMSGIAEILLN-EGYQISG-SDIAD-GVVTQRLA----QAGAKIYIGHAEEHI-----EGAS   69 (96)
T ss_dssp             CCCTTCCEEEEETT-TSTTHHHHHHHHHH-HTCEEEE-EESCC-SHHHHHHH----HTTCEEEESCCGGGG-----TTCS
T ss_pred             ccchhCCEEEEEEE-CHHHHHHHHHHHHh-CCCEEEE-EeCCC-ChhhhHHH----HCCCeEEECCccccC-----CCCC
Confidence            34566789999997 888854 5665554 6998876 57532 22333343    346666543222221     2688


Q ss_pred             EEEEccC--chhHHHHHHHHHHCCCcEE
Q 027650          109 VVIDFTD--ASTVYDNVKQATAFGMRSV  134 (220)
Q Consensus       109 VVIDfT~--p~~~~~~~~~al~~G~~vV  134 (220)
                      +|| +|+  |+...+ +..|.++|+|+|
T Consensus        70 ~vV-~S~AI~~~npe-l~~A~~~gipii   95 (96)
T d1p3da1          70 VVV-VSSAIKDDNPE-LVTSKQKRIPVI   95 (96)
T ss_dssp             EEE-ECTTSCTTCHH-HHHHHHTTCCEE
T ss_pred             EEE-ECCCcCCCCHH-HHHHHHcCCCEE
Confidence            877 443  444444 667888999886

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0094  Score=45.21  Aligned_cols=97  Identities=15%  Similarity=0.140  Sum_probs=53.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC--CHHHHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS--DLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~--dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|.|+|++|.+|...+..+.. -++++++.++++.   ....+..++ ...+.-+.  |+.+.+.+.-....+|+++|+.
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a~~-~G~~vi~~~~~~~---~~~~~~~~G-a~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~  105 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIARA-YGLKILGTAGTEE---GQKIVLQNG-AHEVFNHREVNYIDKIKKYVGEKGIDIIIEML  105 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHHHH-TTCEEEEEESSHH---HHHHHHHTT-CSEEEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred             EEEEEeccccccccccccccc-cCccccccccccc---ccccccccC-cccccccccccHHHHhhhhhccCCceEEeecc
Confidence            799999999999999987755 5899998886521   111111111 11111122  3333321111123588888876


Q ss_pred             CchhHHHHHHHH-HHCCCcEEEeCCC
Q 027650          115 DASTVYDNVKQA-TAFGMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~a-l~~G~~vVigTtG  139 (220)
                      ... ..+....+ ...|.-+++|..+
T Consensus       106 g~~-~~~~~~~~l~~~G~iv~~G~~~  130 (174)
T d1yb5a2         106 ANV-NLSKDLSLLSHGGRVIVVGSRG  130 (174)
T ss_dssp             HHH-HHHHHHHHEEEEEEEEECCCCS
T ss_pred             cHH-HHHHHHhccCCCCEEEEEecCC
Confidence            644 34444333 3446656667653

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=96.02  E-value=0.032  Score=45.28  Aligned_cols=115  Identities=15%  Similarity=0.169  Sum_probs=73.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCC------------CCCccccCCHHHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQ------------PLEIPVMSDLTMV   97 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~------------~~gv~v~~dl~~~   97 (220)
                      -.||+|-|. |++|+.+++.+.+. +..++++.|.     +..|-|+..+.....            ..+.....+.+++
T Consensus        31 g~~v~IqGf-GnVG~~~a~~L~~~-Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  108 (242)
T d1v9la1          31 GKTVAIQGM-GNVGRWTAYWLEKM-GAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAI  108 (242)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTT-TCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGG
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHc-CCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchh
Confidence            469999996 99999999999765 9999999985     344666554432211            1122333456777


Q ss_pred             HhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650           98 LGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus        98 l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                      +.     .++||++=++..... .+++.   +-+..+|+|-- + ++++-.+.    -+++|+  ++.|.|
T Consensus       109 ~~-----~~~DIliPcA~~~~I~~~~a~---~i~ak~IvegAN~p~t~~a~~~----L~~rgI--~~~PD~  165 (242)
T d1v9la1         109 FK-----LDVDIFVPAAIENVIRGDNAG---LVKARLVVEGANGPTTPEAERI----LYERGV--VVVPDI  165 (242)
T ss_dssp             GG-----CCCSEEEECSCSSCBCTTTTT---TCCCSEEECCSSSCBCHHHHHH----HHTTTC--EEECHH
T ss_pred             cc-----ccccEEeecchhccccHHHHH---hcccCEEEecCCCCCChhHHHH----HHhCCe--EEeCch
Confidence            76     489999988765544 33443   45678898765 3 56654322    234454  555554

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.90  E-value=0.0071  Score=46.38  Aligned_cols=97  Identities=14%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CC--HHHHHhccccCCCccEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SD--LTMVLGSISQSKARAVVID  112 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~d--l~~~l~~~~~~~~~DVVID  112 (220)
                      +|+|+|+ |.+|...+..+... +.+-|.++|+...-.+...-.|.   ..+..+  .|  .++..... ....+|++||
T Consensus        30 ~VlV~Ga-GgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~~a~~lGa---~~~i~~~~~d~~~~~~~~~~-~~~G~d~vid  103 (174)
T d1p0fa2          30 TCAVFGL-GGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIELGA---TECLNPKDYDKPIYEVICEK-TNGGVDYAVE  103 (174)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHTTC---SEEECGGGCSSCHHHHHHHH-TTSCBSEEEE
T ss_pred             EEEEECC-CchhHHHHHHHHHc-CCceeeccCChHHHHHHHHHcCC---cEEEcCCCchhHHHHHHHHh-cCCCCcEEEE
Confidence            6999997 99999998877765 55555566753211222222221   111111  12  33332210 1235888888


Q ss_pred             ccCchhHHHHHHHHH-H-CCCcEEEeCCC
Q 027650          113 FTDASTVYDNVKQAT-A-FGMRSVVYVPH  139 (220)
Q Consensus       113 fT~p~~~~~~~~~al-~-~G~~vVigTtG  139 (220)
                      ++......+....++ + .|+-+++|.++
T Consensus       104 ~~g~~~~~~~~~~~~~~~~G~~v~vG~~~  132 (174)
T d1p0fa2         104 CAGRIETMMNALQSTYCGSGVTVVLGLAS  132 (174)
T ss_dssp             CSCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             cCCCchHHHHHHHHHHHhcCceEEEEEec
Confidence            887666655555444 3 35667777654

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.89  E-value=0.036  Score=44.85  Aligned_cols=117  Identities=15%  Similarity=0.224  Sum_probs=73.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCC----Ccc--ccCCHHHHHhccc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPL----EIP--VMSDLTMVLGSIS  102 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~----gv~--v~~dl~~~l~~~~  102 (220)
                      ...||+|-|. |++|+.+++.+.+.-+..++++.|+     ...|-|..++.......    +.+  -+-+.++++.   
T Consensus        30 ~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---  105 (234)
T d1b26a1          30 KKATVAVQGF-GNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE---  105 (234)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT---
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc---
Confidence            4469999996 9999999998876569999999985     34466655443211000    101  1235677886   


Q ss_pred             cCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCC
Q 027650          103 QSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTL  165 (220)
Q Consensus       103 ~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNf  165 (220)
                        .++||++=++..... .+++.   +-..++|+|--  .++++-.+.   + .++|  +++.|.|
T Consensus       106 --~~~DI~~PcA~~~~I~~~~a~---~l~~~~I~e~AN~p~t~~a~~~---L-~~rg--I~~~PD~  160 (234)
T d1b26a1         106 --LDVDILVPAALEGAIHAGNAE---RIKAKAVVEGANGPTTPEADEI---L-SRRG--ILVVPDI  160 (234)
T ss_dssp             --SCCSEEEECSCTTCBCHHHHT---TCCCSEEECCSSSCBCHHHHHH---H-HHTT--CEEECHH
T ss_pred             --cccceeecchhcccccHHHHH---HhhhceEeecCCCCCCHHHHHH---H-HHCC--eEEechH
Confidence              489999977776655 34444   44578898866  356643222   2 3444  5555654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.85  E-value=0.0042  Score=46.83  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=26.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ||+|+||+|++|+.++-.+...+-+.=+..+|.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            8999998899999999888876654445567853

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.84  E-value=0.017  Score=43.62  Aligned_cols=73  Identities=19%  Similarity=0.160  Sum_probs=43.8

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC---CC--cchhhhhc-CCCCCCccccCCHHHHHhccccCCC
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS---VG--EDIGMVCD-MEQPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~---~g--~d~g~l~g-~~~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      ..+.||+|+|+ |++|+.++-.+...+=.||+ ++|...   .|  .|+..... .+....+...++.++.+.      +
T Consensus         5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~-L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~------~   76 (154)
T d1pzga1           5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALT------G   76 (154)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEE-EECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHT------T
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCceEE-EEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhc------C
Confidence            45689999998 99999988777766545866 778532   11  12211110 011122333567777775      7


Q ss_pred             ccEEEEc
Q 027650          107 RAVVIDF  113 (220)
Q Consensus       107 ~DVVIDf  113 (220)
                      +|+||..
T Consensus        77 adiVvit   83 (154)
T d1pzga1          77 ADCVIVT   83 (154)
T ss_dssp             CSEEEEC
T ss_pred             CCeEEEe
Confidence            8988843

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.84  E-value=0.0041  Score=47.94  Aligned_cols=100  Identities=13%  Similarity=0.149  Sum_probs=54.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCC-HHHHHhccccCCCccEEEEccC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~d-l~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .|+|.|+ |.+|...+..+...-.-+++ ++|+...-.+...-.|.....+..-.++ .+++... -....+|++||++.
T Consensus        32 tVlI~G~-GgvGl~ai~~ak~~G~~~Vi-~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~-~~g~G~d~vi~~~g  108 (176)
T d1d1ta2          32 TCVVFGL-GGVGLSVIMGCKSAGASRII-GIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSE-MTGNNVGYTFEVIG  108 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCSEEE-EECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHH-HHTSCCCEEEECSC
T ss_pred             EEEEECC-CchhHHHHHHHHHcCCceEE-EecCcHHHHHHHHhcCCcEEECccccchHHHHHHHH-hccccceEEEEeCC
Confidence            4999997 99999999887765334555 4665322222222222110000000111 2222210 01247999999988


Q ss_pred             chhHHHHHHHHH-HC-CCcEEEeCCC
Q 027650          116 ASTVYDNVKQAT-AF-GMRSVVYVPH  139 (220)
Q Consensus       116 p~~~~~~~~~al-~~-G~~vVigTtG  139 (220)
                      .....+.....+ +. |+-+++|.+.
T Consensus       109 ~~~~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         109 HLETMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             CHHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred             chHHHHHHHHHhhcCCeEEEEEEccc
Confidence            777666554444 33 6888888764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.009  Score=45.20  Aligned_cols=95  Identities=17%  Similarity=0.146  Sum_probs=52.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcc---c--cCCHHHHHhcc--ccCCCccE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIP---V--MSDLTMVLGSI--SQSKARAV  109 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~---v--~~dl~~~l~~~--~~~~~~DV  109 (220)
                      +|+|+|+ |.+|...+..+.. -+.+-+-++|+..  ... +++   ..+|..   .  .++..+....+  .....+|+
T Consensus        29 ~VlI~G~-G~iG~~~~~~a~~-~G~~~Vi~~d~~~--~rl-~~a---~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dv  100 (171)
T d1pl8a2          29 KVLVCGA-GPIGMVTLLVAKA-MGAAQVVVTDLSA--TRL-SKA---KEIGADLVLQISKESPQEIARKVEGQLGCKPEV  100 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTCSEEEEEESCH--HHH-HHH---HHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSE
T ss_pred             EEEEECC-CccHHHHHHHHHH-cCCceEEeccCCH--HHH-HHH---HHhCCcccccccccccccccccccccCCCCceE
Confidence            6999997 9999999887765 4664444566531  111 111   012211   1  23443332110  01136899


Q ss_pred             EEEccCchhHHHHHHHHHHCC-CcEEEeCCC
Q 027650          110 VIDFTDASTVYDNVKQATAFG-MRSVVYVPH  139 (220)
Q Consensus       110 VIDfT~p~~~~~~~~~al~~G-~~vVigTtG  139 (220)
                      +||++......+.+..+++.| .-+++|.++
T Consensus       101 vid~~G~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2         101 TIECTGAEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             EEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             EEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence            999987776666665555555 444556553

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.80  E-value=0.034  Score=45.89  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=30.5

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+.+|+|+|+||.+|+.+++.+.+. +.++++++.+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~-G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAV-GHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhC-CCeEEEEECC
Confidence            4678999999999999999999874 8899988753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.79  E-value=0.0044  Score=45.96  Aligned_cols=32  Identities=16%  Similarity=0.398  Sum_probs=26.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |||+|+|++|.||+.+++.+.. .+.+++-. ++
T Consensus         1 Mki~vigGaG~iG~alA~~la~-~G~~V~l~-~R   32 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLAT-LGHEIVVG-SR   32 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEEE-ES
T ss_pred             CEEEEEeCCcHHHHHHHHHHHH-CCCEEEEE-EC
Confidence            7999997679999999999886 48888754 55

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.78  E-value=0.0027  Score=48.64  Aligned_cols=93  Identities=15%  Similarity=0.176  Sum_probs=50.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (220)
                      +|.|.|++|.+|...+..+.. -+++++++.+++.   ....+..++ ...+..+.+..+....   ...+|+|+|++-+
T Consensus        30 ~VlI~ga~G~vG~~aiqlak~-~G~~vi~~~~~~~---~~~~~~~lG-a~~~i~~~~~~~~~~~---~~g~D~v~d~~G~  101 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVARA-MGLRVLAAASRPE---KLALPLALG-AEEAATYAEVPERAKA---WGGLDLVLEVRGK  101 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHHH-TTCEEEEEESSGG---GSHHHHHTT-CSEEEEGGGHHHHHHH---TTSEEEEEECSCT
T ss_pred             EEEEEeccccchhhhhhhhcc-ccccccccccccc---ccccccccc-cceeeehhhhhhhhhc---cccccccccccch
Confidence            799999999999999987765 5889988776431   111111111 1112223343322221   2468888886653


Q ss_pred             hhHHHHHHHHHHCCCcEEEeCC
Q 027650          117 STVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       117 ~~~~~~~~~al~~G~~vVigTt  138 (220)
                       .....+......|.-+++|.+
T Consensus       102 -~~~~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2         102 -EVEESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             -THHHHHTTEEEEEEEEEC---
T ss_pred             -hHHHHHHHHhcCCcEEEEeCC
Confidence             333333333344555556654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.74  E-value=0.034  Score=39.90  Aligned_cols=120  Identities=15%  Similarity=0.165  Sum_probs=65.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c------CCHHHHHhccccCCCccE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M------SDLTMVLGSISQSKARAV  109 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~------~dl~~~l~~~~~~~~~DV  109 (220)
                      |++|+|+ |++|+.+++.+.+ .+.+++. +|.+.  +.+.++.    ..+..+ +      +.++++--     .++|+
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~-~g~~vvv-id~d~--~~~~~~~----~~~~~~~~gd~~~~~~l~~a~i-----~~a~~   67 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHR-MGHEVLA-VDINE--EKVNAYA----SYATHAVIANATEENELLSLGI-----RNFEY   67 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHH-TTCCCEE-EESCH--HHHHHTT----TTCSEEEECCTTCTTHHHHHTG-----GGCSE
T ss_pred             EEEEECC-CHHHHHHHHHHHH-CCCeEEE-ecCcH--HHHHHHH----HhCCcceeeecccchhhhccCC-----ccccE
Confidence            6899997 9999999999876 4777764 56431  1122221    111111 1      12333311     26887


Q ss_pred             EEEccCch-hHHH-HHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHH
Q 027650          110 VIDFTDAS-TVYD-NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA  175 (220)
Q Consensus       110 VIDfT~p~-~~~~-~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~  175 (220)
                      +|-.++-+ ...- ....+...+..-++.. .-+++..+.|+    +.|+..++.|..-.|..|.+.+
T Consensus        68 vi~~~~~~~~~~~~~~~~~~~~~~~~iiar-~~~~~~~~~l~----~~Gad~vi~p~~~~a~~la~~l  130 (134)
T d2hmva1          68 VIVAIGANIQASTLTTLLLKELDIPNIWVK-AQNYYHHKVLE----KIGADRIIHPEKDMGVKIAQSL  130 (134)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHTTCSEEEEE-CCSHHHHHHHH----HHTCSEEECHHHHHHHHHHHHH
T ss_pred             EEEEcCchHHhHHHHHHHHHHcCCCcEEee-cccHhHHHHHH----HCCCCEEEChHHHHHHHHHHHH
Confidence            77333322 2222 2233344555545433 34455555554    4578889989888777655443

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=95.73  E-value=0.022  Score=44.09  Aligned_cols=123  Identities=11%  Similarity=0.060  Sum_probs=66.4

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcC------CcEEEEEEecCC-----CCcc--hhhhhcCCCCCCccccCCHHHHHhc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKAR------GMEVAGAIDSHS-----VGED--IGMVCDMEQPLEIPVMSDLTMVLGS  100 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~------~~eLvg~vd~~~-----~g~d--~g~l~g~~~~~gv~v~~dl~~~l~~  100 (220)
                      ..+||.|+||+|.+|..++-.+.+.+      .++| -.+|.+.     .|..  +.+.+. .....+.++++..+.+. 
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L-~L~di~~~~~~l~g~~mdl~d~a~-~~~~~~~~~~~~~~~~~-   99 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIAL-KLLGSERSFQALEGVAMELEDSLY-PLLREVSIGIDPYEVFE-   99 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEE-EEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTT-
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEE-EEecCccccchhcchhhhhccccc-ccccCccccccchhhcc-
Confidence            45799999999999999998776521      1233 2445321     0111  111110 00123455778888875 


Q ss_pred             cccCCCccEEEEcc-C---chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHH
Q 027650          101 ISQSKARAVVIDFT-D---ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA  176 (220)
Q Consensus       101 ~~~~~~~DVVIDfT-~---p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a  176 (220)
                           ++|+||... .   |......   .++.+..++       .+..+.|.+.|.. ++.+++..|-   ++++-.++
T Consensus       100 -----~aDvVvi~ag~~rkpg~tR~D---ll~~N~~I~-------k~~~~~i~~~a~~-~~~vlvv~NP---vd~~t~ia  160 (175)
T d7mdha1         100 -----DVDWALLIGAKPRGPGMERAA---LLDINGQIF-------ADQGKALNAVASK-NVKVLVVGNP---CNTNALIC  160 (175)
T ss_dssp             -----TCSEEEECCCCCCCTTCCHHH---HHHHHHHHH-------HHHHHHHHHHSCT-TCEEEECSSS---HHHHHHHH
T ss_pred             -----CCceEEEeeccCCCCCCcHHH---HHHHHHHHH-------HHHHHHHHhhCCC-CcEEEEecCc---HHHHHHHH
Confidence                 899888543 1   2222211   112222222       4566677777652 3777787883   55565555


Q ss_pred             HH
Q 027650          177 IS  178 (220)
Q Consensus       177 ~~  178 (220)
                      ..
T Consensus       161 ~k  162 (175)
T d7mdha1         161 LK  162 (175)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.72  E-value=0.037  Score=42.44  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=26.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~   66 (220)
                      .||.|.|+||.+|+.+++.+.+.+.. ++...
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~   34 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAP   34 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEE
Confidence            59999999999999999999888775 55443

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.68  E-value=0.023  Score=46.16  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=73.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC-----CCCcchhhhhcC-------CCCCCccccCCHHHHHhcc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH-----SVGEDIGMVCDM-------EQPLEIPVMSDLTMVLGSI  101 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~-----~~g~d~g~l~g~-------~~~~gv~v~~dl~~~l~~~  101 (220)
                      ...+|+|-|. |++|..+++.+.+.-+..+|++.|+.     ..|-|+.++...       ..-.+.. .-+.++++.  
T Consensus        31 ~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~--  106 (239)
T d1gtma1          31 KGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGAT-NITNEELLE--  106 (239)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSE-EECHHHHHH--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCe-eeccccccc--
Confidence            4469999996 99999999988776799999999852     234454433211       0001112 235678887  


Q ss_pred             ccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          102 SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       102 ~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                         .++||++-++..... .+++.   +-+..+|+|--  .++++-.+.   + +++|  +++.|.|-
T Consensus       107 ---~~~DIl~PcA~~~~I~~~~a~---~i~ak~I~e~AN~p~t~ea~~~---L-~~rg--I~~iPD~~  162 (239)
T d1gtma1         107 ---LEVDVLAPAAIEEVITKKNAD---NIKAKIVAEVANGPVTPEADEI---L-FEKG--ILQIPDFL  162 (239)
T ss_dssp             ---SCCSEEEECSCSCCBCTTGGG---GCCCSEEECCSSSCBCHHHHHH---H-HHTT--CEEECHHH
T ss_pred             ---ccccEEeeccccccccHHHHH---hccccEEEecCCCCCCHHHHHH---H-HHCC--CEEecchh
Confidence               489999988765544 33433   56788998866  356653222   2 3444  55556543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.67  E-value=0.011  Score=46.03  Aligned_cols=67  Identities=16%  Similarity=0.093  Sum_probs=45.7

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEE
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      -...+|+|+|+ |++|+.+++.+... ++++.+ +|+.....+...      ..++....++++++.      .+|+|+-
T Consensus        42 l~~~~vgiiG~-G~IG~~va~~l~~f-g~~v~~-~d~~~~~~~~~~------~~~~~~~~~l~~~l~------~sD~v~~  106 (188)
T d2naca1          42 LEAMHVGTVAA-GRIGLAVLRRLAPF-DVHLHY-TDRHRLPESVEK------ELNLTWHATREDMYP------VCDVVTL  106 (188)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGG-TCEEEE-ECSSCCCHHHHH------HHTCEECSSHHHHGG------GCSEEEE
T ss_pred             ccccceeeccc-cccchhhhhhhhcc-CceEEE-Eeeccccccccc------cccccccCCHHHHHH------hccchhh
Confidence            44579999997 99999999988764 777654 565322222221      224455789999986      7998875


Q ss_pred             cc
Q 027650          113 FT  114 (220)
Q Consensus       113 fT  114 (220)
                      ..
T Consensus       107 ~~  108 (188)
T d2naca1         107 NC  108 (188)
T ss_dssp             CS
T ss_pred             cc
Confidence            43

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.63  E-value=0.054  Score=44.36  Aligned_cols=139  Identities=11%  Similarity=0.108  Sum_probs=82.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCC------CCCCcc--------ccCCHH
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDME------QPLEIP--------VMSDLT   95 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~------~~~gv~--------v~~dl~   95 (220)
                      ..||+|-|. |++|+..++.+.+. +..++++.|+     +..|-|..++....      ....+.        .+-+.+
T Consensus        36 g~~v~IQGf-GnVG~~~a~~L~e~-GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (255)
T d1bgva1          36 GKTVALAGF-GNVAWGAAKKLAEL-GAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGE  113 (255)
T ss_dssp             TCEEEECCS-SHHHHHHHHHHHHH-TCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHc-CCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeechh
Confidence            359999996 99999999999874 9999999985     34466554432210      000000        011234


Q ss_pred             HHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCC---cHHH
Q 027650           96 MVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTL---SIGS  169 (220)
Q Consensus        96 ~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNf---S~Gv  169 (220)
                      +++.     .++||+|=+...... .+++......|+.+|+|-- + ++++..   +.+.+++||  ++.|.|   +=||
T Consensus       114 ~~~~-----~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~---~~ll~~~gI--~vvPD~laNaGGV  183 (255)
T d1bgva1         114 KPWG-----QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL---RFLMQQPNM--VVAPSKAVNAGGV  183 (255)
T ss_dssp             CGGG-----SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH---HHHHHCTTC--EEECHHHHTTHHH
T ss_pred             hccc-----ccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHHH---HHHHHhcCC--EEehHhhhcCCce
Confidence            4555     489998866655444 6788888889999999866 3 455432   223345455  444543   3455


Q ss_pred             HH-HHHHHHHhcCCCCC
Q 027650          170 IL-LQQAAISASFHYKN  185 (220)
Q Consensus       170 ~l-l~~~a~~~~~~~~d  185 (220)
                      .+ -.+..+.+..+.|+
T Consensus       184 ivSy~E~~qn~~~~~w~  200 (255)
T d1bgva1         184 LVSGFEMSQNSERLSWT  200 (255)
T ss_dssp             HHHHHHHHHHHHTSCCC
T ss_pred             eeehhhhhhhhhhhhhh
Confidence            32 12234444444443

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=95.63  E-value=0.0058  Score=49.80  Aligned_cols=30  Identities=20%  Similarity=0.215  Sum_probs=24.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVA   64 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLv   64 (220)
                      ++.||.|.|++|.+|+.+++.|.+. +.+++
T Consensus         1 ~kkkIlITG~tGfiG~~l~~~L~~~-g~~vi   30 (315)
T d1e6ua_           1 AKQRVFIAGHRGMVGSAIRRQLEQR-GDVEL   30 (315)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTC-TTEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHC-cCEEE
Confidence            3579999999999999999999875 44444

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=95.61  E-value=0.018  Score=47.74  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=27.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc-CCcEEEEEEe
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA-RGMEVAGAID   68 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-~~~eLvg~vd   68 (220)
                      .||||.|+|++|-+|+.+++.+.+. .++.+++ +|
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~-~d   35 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV-LD   35 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEE-EE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEE-Ee
Confidence            4899999999999999999998765 3566664 45

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.56  E-value=0.014  Score=43.83  Aligned_cols=93  Identities=13%  Similarity=0.034  Sum_probs=54.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc---cCCHHHHHhccccCCCccEEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV---MSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v---~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +|+|.|+ |.+|...+..+... +...|.++++...-.+...-+|..  .-+..   .++..+.+... ....+|++||+
T Consensus        31 tVlI~Ga-GGvG~~aiq~ak~~-G~~~vi~~~~~~~k~~~ak~lGa~--~~i~~~~~~~~~~~~~~~~-~~~g~D~vid~  105 (176)
T d2fzwa2          31 VCAVFGL-GGVGLAVIMGCKVA-GASRIIGVDINKDKFARAKEFGAT--ECINPQDFSKPIQEVLIEM-TDGGVDYSFEC  105 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHHTCS--EEECGGGCSSCHHHHHHHH-TTSCBSEEEEC
T ss_pred             EEEEecc-hhHHHHHHHHHHHH-hcCceEEEcccHHHHHHHHHhCCc--EEEeCCchhhHHHHHHHHH-cCCCCcEeeec
Confidence            6999998 88999988877765 666666667532112222222211  01111   12333333211 12368999999


Q ss_pred             cCchhHHHHHHHHHHCCCcEE
Q 027650          114 TDASTVYDNVKQATAFGMRSV  134 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vV  134 (220)
                      +-.....+.+..+++.|..++
T Consensus       106 ~G~~~~~~~~~~~~~~g~~~~  126 (176)
T d2fzwa2         106 IGNVKVMRAALEACHKGWGVS  126 (176)
T ss_dssp             SCCHHHHHHHHHTBCTTTCEE
T ss_pred             CCCHHHHHHHHHhhcCCceeE
Confidence            988778888888887774443

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.48  E-value=0.012  Score=46.44  Aligned_cols=62  Identities=15%  Similarity=0.048  Sum_probs=43.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -.+|+|+|+ |++|+.+++.+... ++++.+ +|+..  ......      .+ ....++++++.      .+|+|+...
T Consensus        43 gk~vgIiG~-G~IG~~va~~l~~f-g~~V~~-~d~~~--~~~~~~------~~-~~~~~l~~~l~------~sDii~~~~  104 (197)
T d1j4aa1          43 DQVVGVVGT-GHIGQVFMQIMEGF-GAKVIT-YDIFR--NPELEK------KG-YYVDSLDDLYK------QADVISLHV  104 (197)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSSC--CHHHHH------TT-CBCSCHHHHHH------HCSEEEECS
T ss_pred             CCeEEEecc-cccchhHHHhHhhh-cccccc-cCccc--cccccc------ce-eeecccccccc------ccccccccC
Confidence            368999996 99999999998764 889875 56532  111111      11 22468999997      699888543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.0045  Score=46.74  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=24.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHH-hcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVT-KARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~-~~~~~eLvg~vd~   69 (220)
                      |||+|+|++|++|+.++-.+. +.+-..-+..+|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~   35 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecc
Confidence            799999988999999887664 4344433456775

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.40  E-value=0.0074  Score=46.31  Aligned_cols=99  Identities=15%  Similarity=0.137  Sum_probs=53.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|+|+|+ |.+|...+..+.. -+.+-|-++|+...-.+..+-.|.   ..+..+  +++.+.+.+......+|++||++
T Consensus        30 ~VlI~Ga-G~vGl~~~q~ak~-~Ga~~Vi~~d~~~~r~~~a~~lGa---~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~  104 (174)
T d1jqba2          30 SVVVIGI-GAVGLMGIAGAKL-RGAGRIIGVGSRPICVEAAKFYGA---TDILNYKNGHIEDQVMKLTNGKGVDRVIMAG  104 (174)
T ss_dssp             CEEEECC-SHHHHHHHHHHHT-TTCSCEEEECCCHHHHHHHHHHTC---SEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred             EEEEEcC-Ccchhhhhhhhhc-ccccccccccchhhhHHHHHhhCc---cccccccchhHHHHHHHHhhccCcceEEEcc
Confidence            6999997 9999998887764 576545566653111111111221   111111  23333322211123589999988


Q ss_pred             CchhHHHH-HHHHHHCCCcEEEeCCCC
Q 027650          115 DASTVYDN-VKQATAFGMRSVVYVPHI  140 (220)
Q Consensus       115 ~p~~~~~~-~~~al~~G~~vVigTtG~  140 (220)
                      ......+. +..+...|.-+++|.++.
T Consensus       105 g~~~~~~~a~~~~~~~G~iv~~G~~~~  131 (174)
T d1jqba2         105 GGSETLSQAVKMVKPGGIISNINYHGS  131 (174)
T ss_dssp             SCTTHHHHHHHHEEEEEEEEECCCCCS
T ss_pred             CCHHHHHHHHHHHhcCCEEEEEeecCC
Confidence            64444444 445555666667776543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.40  E-value=0.018  Score=39.95  Aligned_cols=84  Identities=18%  Similarity=0.156  Sum_probs=51.8

Q ss_pred             ceEEEEcCCCHHHHH-HHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRA-AVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~-i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      |||=.+|. |++|.. +++.+ ...++.+.| .|... ......|.    ..|++++...+...-     .++|+|| +|
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L-~~~G~~VsG-SD~~~-~~~t~~L~----~~Gi~i~~gh~~~~i-----~~~d~vV-~S   67 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHE-FSNGNDVYG-SNIEE-TERTAYLR----KLGIPIFVPHSADNW-----YDPDLVI-KT   67 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHH-HHTTCEEEE-ECSSC-CHHHHHHH----HTTCCEESSCCTTSC-----CCCSEEE-EC
T ss_pred             cEEEEEeE-CHHHHHHHHHHH-HhCCCeEEE-EeCCC-ChhHHHHH----HCCCeEEeeeccccc-----CCCCEEE-Ee
Confidence            78999997 889964 55554 456997776 57532 22223332    567777543222211     2689888 44


Q ss_pred             C--chhHHHHHHHHHHCCCcEE
Q 027650          115 D--ASTVYDNVKQATAFGMRSV  134 (220)
Q Consensus       115 ~--p~~~~~~~~~al~~G~~vV  134 (220)
                      +  |+. .+.+.+|.+.|+|+.
T Consensus        68 sAI~~~-npel~~A~~~gIpv~   88 (89)
T d1j6ua1          68 PAVRDD-NPEIVRARMERVPIE   88 (89)
T ss_dssp             TTCCTT-CHHHHHHHHTTCCEE
T ss_pred             cCcCCC-CHHHHHHHHcCCCcc
Confidence            3  444 344788899999885

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.38  E-value=0.016  Score=43.76  Aligned_cols=32  Identities=28%  Similarity=0.347  Sum_probs=27.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +|.|+|++|.+|...+..+.. -++++++++++
T Consensus        28 ~VlI~ga~g~vG~~~iqla~~-~g~~vi~~~~~   59 (183)
T d1pqwa_          28 RVLIHSATGGVGMAAVSIAKM-IGARIYTTAGS   59 (183)
T ss_dssp             EEEETTTTSHHHHHHHHHHHH-HTCEEEEEESS
T ss_pred             EEEEECCCCCcccccchhhcc-ccccceeeecc
Confidence            799999999999999987765 58899988764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.36  E-value=0.0085  Score=44.60  Aligned_cols=33  Identities=18%  Similarity=0.370  Sum_probs=26.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEecC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDSH   70 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~~   70 (220)
                      |||+|+|+ |++|..++-.+...+-. ||+ .+|.+
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~-L~Di~   34 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDVV   34 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEE-Eeccc
Confidence            79999997 99999999888776543 554 78853

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.34  E-value=0.014  Score=45.68  Aligned_cols=65  Identities=17%  Similarity=0.150  Sum_probs=44.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -.+|+|+|. |++|+.+++.+... ++++.+ +|+.....+...      ..+...+.++++++.      .+|+|+...
T Consensus        47 g~tvgIiG~-G~IG~~va~~l~~f-g~~v~~-~d~~~~~~~~~~------~~~~~~~~~l~~ll~------~sD~v~l~~  111 (191)
T d1gdha1          47 NKTLGIYGF-GSIGQALAKRAQGF-DMDIDY-FDTHRASSSDEA------SYQATFHDSLDSLLS------VSQFFSLNA  111 (191)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTT-TCEEEE-ECSSCCCHHHHH------HHTCEECSSHHHHHH------HCSEEEECC
T ss_pred             ccceEEeec-ccchHHHHHHHHhh-cccccc-ccccccccchhh------cccccccCCHHHHHh------hCCeEEecC
Confidence            468999997 99999999987654 888775 565321111111      112344678999997      689888654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.33  E-value=0.017  Score=43.36  Aligned_cols=96  Identities=18%  Similarity=0.148  Sum_probs=50.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc----cCCHHHHHhccc--cCCCccEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV----MSDLTMVLGSIS--QSKARAVV  110 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v----~~dl~~~l~~~~--~~~~~DVV  110 (220)
                      +|+|+|+ |.+|...+..+.. .+.++++ +|+...-.+...-.|.   ....+    ..+.++....+.  ....+|++
T Consensus        29 ~vlV~G~-G~vG~~~~~~ak~-~Ga~vi~-v~~~~~r~~~a~~~ga---~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v  102 (170)
T d1e3ja2          29 TVLVIGA-GPIGLVSVLAAKA-YGAFVVC-TARSPRRLEVAKNCGA---DVTLVVDPAKEEESSIIERIRSAIGDLPNVT  102 (170)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTCEEEE-EESCHHHHHHHHHTTC---SEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             EEEEEcc-cccchhhHhhHhh-hcccccc-cchHHHHHHHHHHcCC---cEEEeccccccccchhhhhhhcccccCCcee
Confidence            7999996 9999999887765 5788776 4542110111111111   00111    122332221110  12368999


Q ss_pred             EEccCchhHHHHHHHH-HHCCCcEEEeCC
Q 027650          111 IDFTDASTVYDNVKQA-TAFGMRSVVYVP  138 (220)
Q Consensus       111 IDfT~p~~~~~~~~~a-l~~G~~vVigTt  138 (220)
                      ||++......+.+..+ ...|.-+++|.+
T Consensus       103 id~~g~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         103 IDCSGNEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             EECSCCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             eecCCChHHHHHHHHHHhcCCceEEEecC
Confidence            9988766655555444 445555556655

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.32  E-value=0.018  Score=43.90  Aligned_cols=32  Identities=25%  Similarity=0.393  Sum_probs=27.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +|.|.|++|.+|+..+..... -+.++++...+
T Consensus        32 ~VlV~ga~ggvG~~aiqlak~-~Ga~vi~~~~~   63 (182)
T d1v3va2          32 TVLVSAAAGAVGSVVGQIAKL-KGCKVVGAAGS   63 (182)
T ss_dssp             EEEESSTTSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             EEEEEeCCCchhHHHHHHHHc-cCCEEEEeCCC
Confidence            699999999999999987664 58999988754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.30  E-value=0.0099  Score=44.95  Aligned_cols=91  Identities=16%  Similarity=0.098  Sum_probs=48.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC---CHHHHHhccccCCCccEEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS---DLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~---dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      +|+|+|+ |.+|...+..+.. -+.++++ +|+...-.+...-+|.   ..+..+.   +..+...     ..+|+++|+
T Consensus        30 ~vlI~Ga-G~vG~~a~q~ak~-~G~~vi~-~~~~~~k~~~a~~lGa---~~~i~~~~~~~~~~~~~-----~~~d~vi~~   98 (168)
T d1piwa2          30 KVGIVGL-GGIGSMGTLISKA-MGAETYV-ISRSSRKREDAMKMGA---DHYIATLEEGDWGEKYF-----DTFDLIVVC   98 (168)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-HTCEEEE-EESSSTTHHHHHHHTC---SEEEEGGGTSCHHHHSC-----SCEEEEEEC
T ss_pred             EEEEECC-CCcchhHHHHhhh-ccccccc-cccchhHHHHhhccCC---cEEeeccchHHHHHhhh-----cccceEEEE
Confidence            7999997 9999998877665 5899886 4542211122111221   1111122   2222222     368999997


Q ss_pred             cCc--hhHHHHH-HHHHHCCCcEEEeCC
Q 027650          114 TDA--STVYDNV-KQATAFGMRSVVYVP  138 (220)
Q Consensus       114 T~p--~~~~~~~-~~al~~G~~vVigTt  138 (220)
                      ...  +...+.. ......|+-+++|.+
T Consensus        99 ~~~~~~~~~~~~~~~l~~~G~iv~~G~~  126 (168)
T d1piwa2          99 ASSLTDIDFNIMPKAMKVGGRIVSISIP  126 (168)
T ss_dssp             CSCSTTCCTTTGGGGEEEEEEEEECCCC
T ss_pred             ecCCccchHHHHHHHhhccceEEEeccc
Confidence            532  2223333 333344666666655

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.29  E-value=0.035  Score=43.88  Aligned_cols=110  Identities=18%  Similarity=0.249  Sum_probs=69.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      -.||+|.|. |++|+.+++.+.+. +.+|+ ++|.+.  ..+....    ..+.. .-+.++++.     .++|+++=+.
T Consensus        27 gk~v~IqG~-G~VG~~~A~~L~~~-Gakvv-v~d~d~--~~~~~~~----~~g~~-~~~~~~~~~-----~~~DI~iPcA   91 (201)
T d1c1da1          27 GLTVLVQGL-GAVGGSLASLAAEA-GAQLL-VADTDT--ERVAHAV----ALGHT-AVALEDVLS-----TPCDVFAPCA   91 (201)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSCH--HHHHHHH----HTTCE-ECCGGGGGG-----CCCSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEE-EecchH--HHHHHHH----hhccc-ccCcccccc-----ccceeeeccc
Confidence            368999996 99999999998874 89988 456431  1222222    12222 235677776     4899998776


Q ss_pred             CchhH-HHHHHHHHHCCCcEEEeCC--CCCHHHHHHHHHHhhhcCceEEEcCCCcH
Q 027650          115 DASTV-YDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLSI  167 (220)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~vVigTt--G~~~e~~~~L~~aA~~~~v~vviapNfS~  167 (220)
                      ..... .+++.   +-+..+|+|-.  .++++..   .+.-+++  .+++.|.|-.
T Consensus        92 ~~~~I~~~~a~---~i~ak~i~e~AN~p~~~~~~---~~~L~~r--gI~~iPD~la  139 (201)
T d1c1da1          92 MGGVITTEVAR---TLDCSVVAGAANNVIADEAA---SDILHAR--GILYAPDFVA  139 (201)
T ss_dssp             CSCCBCHHHHH---HCCCSEECCSCTTCBCSHHH---HHHHHHT--TCEECCHHHH
T ss_pred             ccccccHHHHh---hhhhheeeccCCCCcchhhH---HHHhccc--ceEEEehhhh
Confidence            65554 34444   45788998866  2454433   3333454  4577788654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.18  E-value=0.19  Score=38.23  Aligned_cols=30  Identities=20%  Similarity=0.294  Sum_probs=24.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |||+|+|. |++|-.++..+ + .+.+++| +|.
T Consensus         1 MkI~ViGl-G~vGl~~a~~~-a-~g~~V~g-~Di   30 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLL-S-LQNEVTI-VDI   30 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHH-T-TTSEEEE-ECS
T ss_pred             CEEEEECC-ChhHHHHHHHH-H-CCCcEEE-EEC
Confidence            79999995 99999987654 4 4899885 674

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.15  E-value=0.025  Score=44.49  Aligned_cols=61  Identities=18%  Similarity=0.150  Sum_probs=42.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|. |++|+.+++.+... ++++.+ +|+......         ... .-+.++++++.      .+|+|+-..
T Consensus        45 ~ktvgIiG~-G~IG~~va~~l~~f-g~~v~~-~d~~~~~~~---------~~~-~~~~~l~~l~~------~~D~v~~~~  105 (199)
T d1dxya1          45 QQTVGVMGT-GHIGQVAIKLFKGF-GAKVIA-YDPYPMKGD---------HPD-FDYVSLEDLFK------QSDVIDLHV  105 (199)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHT-TCEEEE-ECSSCCSSC---------CTT-CEECCHHHHHH------HCSEEEECC
T ss_pred             ceeeeeeec-cccccccccccccc-ceeeec-cCCccchhh---------hcc-hhHHHHHHHHH------hcccceeee
Confidence            368999996 99999999998765 899875 565321100         111 12568999987      689888544

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.14  E-value=0.048  Score=45.02  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=29.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      --||.|.|++|.+|+.+++.+.++ |.++++.++
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~-G~~V~~~vR   43 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEH-GYKVRGTAR   43 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEES
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEeC
Confidence            358999999999999999988875 899998875

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.12  E-value=0.017  Score=47.21  Aligned_cols=32  Identities=25%  Similarity=0.289  Sum_probs=28.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      .++.|.||+|-+|+.+++.+.+ .+.+++|+..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~-~g~~V~~~~r   33 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLG-KGYEVHGLIR   33 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEC
T ss_pred             CEEEEeCCccHHHHHHHHHHHH-CcCEEEEEEC
Confidence            5789999999999999999987 4999998764

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.05  E-value=0.088  Score=41.77  Aligned_cols=34  Identities=15%  Similarity=0.179  Sum_probs=27.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHh--cCCcEEEEEEe
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTK--ARGMEVAGAID   68 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~--~~~~eLvg~vd   68 (220)
                      |.+|.|.|+++++|+.+++.+.+  ..+..|+....
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r   37 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCR   37 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEES
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence            55799999999999999998864  57888876543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.04  E-value=0.0079  Score=46.62  Aligned_cols=96  Identities=20%  Similarity=0.226  Sum_probs=53.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCC-HHHHHhccccCCCccEEEEccC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD-LTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~d-l~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      +|.|.|++|.+|...+..+.. -+.++++.+.++.. .+.-.-.|.   ..+.-+++ .++..... ....+|+|+|.--
T Consensus        34 ~VLI~gaaGGVG~~aiQlak~-~Ga~Viat~~s~~k-~~~~~~lGa---~~vi~~~~~~~~~~~~~-~~~gvD~vid~vg  107 (176)
T d1xa0a2          34 PVLVTGATGGVGSLAVSMLAK-RGYTVEASTGKAAE-HDYLRVLGA---KEVLAREDVMAERIRPL-DKQRWAAAVDPVG  107 (176)
T ss_dssp             CEEESSTTSHHHHHHHHHHHH-TTCCEEEEESCTTC-HHHHHHTTC---SEEEECC---------C-CSCCEEEEEECST
T ss_pred             EEEEEeccchHHHHHHHHHHH-cCCceEEecCchHH-HHHHHhccc---ceeeecchhHHHHHHHh-hccCcCEEEEcCC
Confidence            699999999999999987665 59999998765321 111111221   11111222 22322211 1247999999655


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCC
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      -+.....+......|.=+++|.+
T Consensus       108 g~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         108 GRTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             TTTHHHHHHTEEEEEEEEECSCC
T ss_pred             chhHHHHHHHhCCCceEEEeecc
Confidence            44444444444445555566765

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.029  Score=46.86  Aligned_cols=31  Identities=23%  Similarity=0.266  Sum_probs=26.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      +|.|.|++|-+|+.+++.+.+. +.+++++..
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~-g~~V~~~~r   33 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEK-GYEVHGIKR   33 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEECC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHC-cCEEEEEEC
Confidence            4559999999999999999875 889987643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.96  E-value=0.0049  Score=46.05  Aligned_cols=32  Identities=25%  Similarity=0.305  Sum_probs=25.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      |||+|+|+ |++|..++-.+...+-. ||+ .+|.
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~-L~Di   33 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMV-LIDV   33 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEE-EEec
Confidence            79999997 99999998877765544 554 7784

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.96  E-value=0.027  Score=42.43  Aligned_cols=122  Identities=12%  Similarity=0.058  Sum_probs=62.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .|+|+|+ |.+|...+..+... +...+.++|+...-.+...-.|.   ..+..+  ++.++.++. .....+|++||++
T Consensus        35 ~vli~Ga-G~vG~~~~~~a~~~-g~~~vv~~~~~~~k~~~~~~~ga---~~~i~~~~~~~~~~~~~-~~~~g~d~vid~~  108 (172)
T d1h2ba2          35 YVAIVGV-GGLGHIAVQLLKVM-TPATVIALDVKEEKLKLAERLGA---DHVVDARRDPVKQVMEL-TRGRGVNVAMDFV  108 (172)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHH-CCCEEEEEESSHHHHHHHHHTTC---SEEEETTSCHHHHHHHH-TTTCCEEEEEESS
T ss_pred             EEEEeCC-ChHHHHHHHHHHhh-cCcccccccchhHHHHHHhhccc---ceeecCcccHHHHHHHh-hCCCCceEEEEec
Confidence            6999997 99999988877655 54455566653111111111111   111112  223444431 1123699999999


Q ss_pred             CchhHHHHHHHHHH-CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHH
Q 027650          115 DASTVYDNVKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (220)
Q Consensus       115 ~p~~~~~~~~~al~-~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~G  168 (220)
                      ......+....+++ .|.-+++|-++-.  ......-..++  +.+.-+-.++..
T Consensus       109 g~~~~~~~a~~~l~~~G~iv~~G~~~~~--~~~~~~l~~k~--~~i~Gs~~~~~~  159 (172)
T d1h2ba2         109 GSQATVDYTPYLLGRMGRLIIVGYGGEL--RFPTIRVISSE--VSFEGSLVGNYV  159 (172)
T ss_dssp             CCHHHHHHGGGGEEEEEEEEECCCSSCC--CCCHHHHHHTT--CEEEECCSCCHH
T ss_pred             CcchHHHHHHHHHhCCCEEEEEeCcccc--cCCHHHHHhCC--cEEEEEEecCHH
Confidence            87666665555544 4555556644211  11111222334  777766555543

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.95  E-value=0.059  Score=45.09  Aligned_cols=136  Identities=12%  Similarity=0.081  Sum_probs=79.7

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec-----CCCCcchhhhhcCCCCCC-c---c-ccCCHHHHHhcccc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS-----HSVGEDIGMVCDMEQPLE-I---P-VMSDLTMVLGSISQ  103 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~-----~~~g~d~g~l~g~~~~~g-v---~-v~~dl~~~l~~~~~  103 (220)
                      ...+|+|-|. |++|+..++.+.+ .+..++++.|+     ...|-|+.++.......+ +   + ..-+.++++.    
T Consensus        35 ~gktvaIqGf-GnVG~~~A~~L~e-~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~----  108 (293)
T d1hwxa1          35 GDKTFAVQGF-GNVGLHSMRYLHR-FGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILE----  108 (293)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHH-TTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGG----
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHH-CCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCccccc----
Confidence            3468999996 9999999999986 49999999985     345666655432100000 0   0 0112345665    


Q ss_pred             CCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-C-CCHHHHHHHHHHhhhcCceEEEcCCCc---HHHHH-HHHHH
Q 027650          104 SKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-H-IQLETVSALSAFCDKASMGCLIAPTLS---IGSIL-LQQAA  176 (220)
Q Consensus       104 ~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G-~~~e~~~~L~~aA~~~~v~vviapNfS---~Gv~l-l~~~a  176 (220)
                       .++||+|=++..... .+++.   +-+..+|++-- + ++++-.+.    -+++|  +++.|.|-   =||.+ -.+..
T Consensus       109 -~~~DIliPaA~~~~I~~~~a~---~l~ak~I~EgAN~P~t~eA~~~----L~~~g--I~viPD~laNAGGV~vSy~Ew~  178 (293)
T d1hwxa1         109 -VDCDILIPAASEKQLTKSNAP---RVKAKIIAEGANGPTTPQADKI----FLERN--IMVIPDLYLNAGGVTVSYFQIL  178 (293)
T ss_dssp             -CCCSEEEECSSSSCBCTTTGG---GCCCSEEECCSSSCBCHHHHHH----HHHTT--CEEECHHHHTTHHHHHHHHHHH
T ss_pred             -CCccEEeeccccccccHHHHH---HHhhCEEeccCCCCCCcchHHH----HHHCC--CEEeChhhhcCchHHhHHHHHH
Confidence             489999977765544 33443   45788998865 3 56654222    23444  55556542   34432 13345


Q ss_pred             HHhcCCCCC
Q 027650          177 ISASFHYKN  185 (220)
Q Consensus       177 ~~~~~~~~d  185 (220)
                      +.+....|+
T Consensus       179 qn~~~~~w~  187 (293)
T d1hwxa1         179 KNLNHVSYG  187 (293)
T ss_dssp             HHHHTSCTT
T ss_pred             hhhhhcccc
Confidence            455544454

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.91  E-value=0.043  Score=41.32  Aligned_cols=94  Identities=11%  Similarity=0.032  Sum_probs=51.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc----CCHHHHHhccccCCCccEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM----SDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~----~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .|+|+|+ |.+|...+..+... +...|-++++...-.+...-.|.   ..+..+    +..++..... ....+|++||
T Consensus        31 tVlV~Ga-GG~G~~~~~~~~~~-g~~~Vi~~~~~~~k~~~a~~~Ga---~~~i~~~~~~~~~~~~~~~~-~~~G~D~vid  104 (176)
T d2jhfa2          31 TCAVFGL-GGVGLSVIMGCKAA-GAARIIGVDINKDKFAKAKEVGA---TECVNPQDYKKPIQEVLTEM-SNGGVDFSFE  104 (176)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC---SEEECGGGCSSCHHHHHHHH-TTSCBSEEEE
T ss_pred             EEEEECC-CCcHHHHHHHHHHc-CCceEEeecCcHHHHHHHHHhCC---eeEEecCCchhHHHHHHHHH-hcCCCCEEEe
Confidence            5999998 88999988887765 44444455543211112211121   111111    1233333211 1136899999


Q ss_pred             ccCchhHHHHHHHHHHCC-CcEEEe
Q 027650          113 FTDASTVYDNVKQATAFG-MRSVVY  136 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G-~~vVig  136 (220)
                      ++......+.....++.| ..++++
T Consensus       105 ~~G~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2         105 VIGRLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             CSCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             cCCchhHHHHHHHHHhcCCcceEEe
Confidence            988777776666666554 343433

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.86  E-value=0.0092  Score=44.71  Aligned_cols=32  Identities=22%  Similarity=0.342  Sum_probs=25.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      |||+|+|+ |++|..++-.+...+-+ ||+ .+|.
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di   33 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIA-LVDI   33 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEE-EECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEE-EEec
Confidence            79999997 99999999888766554 454 6784

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.75  E-value=0.0098  Score=45.02  Aligned_cols=97  Identities=15%  Similarity=0.127  Sum_probs=54.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|.|+|++|.+|...+..+.. -+.++++...++.   ....+..++ ...+..+  .|+.+-+.++..+..+|+++|+.
T Consensus        31 ~Vlv~ga~g~vG~~~iqlak~-~Ga~Vi~~~~s~~---k~~~~~~lG-a~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~  105 (179)
T d1qora2          31 QFLFHAAAGGVGLIACQWAKA-LGAKLIGTVGTAQ---KAQSALKAG-AWQVINYREEDLVERLKEITGGKKVRVVYDSV  105 (179)
T ss_dssp             EEEESSTTBHHHHHHHHHHHH-HTCEEEEEESSHH---HHHHHHHHT-CSEEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             EEEEEccccccchHHHHHHHH-hCCeEeecccchH---HHHHHHhcC-CeEEEECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence            799999999999999987765 5889887765421   111111111 1111112  23333332211224678888877


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCC
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      ..+............|.-+++|..
T Consensus       106 g~~~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2         106 GRDTWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             CGGGHHHHHHTEEEEEEEEECCCT
T ss_pred             cHHHHHHHHHHHhcCCeeeecccc
Confidence            766554444444455655555554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.75  E-value=0.0045  Score=47.60  Aligned_cols=95  Identities=16%  Similarity=0.162  Sum_probs=59.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccc---cCCCccEEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS---QSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~---~~~~~DVVIDf  113 (220)
                      .|.|.|++|.+|...+..... -+.++++.+.++..   ...+.    .+|....-+.++...+..   ....+|+|||.
T Consensus        26 ~VLV~gaaGgVG~~avQlAk~-~Ga~Viat~~s~~k---~~~~~----~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~   97 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLNK-RGYDVVASTGNREA---ADYLK----QLGASEVISREDVYDGTLKALSKQQWQGAVDP   97 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHHH-HTCCEEEEESSSST---HHHHH----HHTCSEEEEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred             EEEEeCCcchHHHHHHHHHHH-cCCceEEEecCHHH---HHHHH----hhcccceEeccchhchhhhcccCCCceEEEec
Confidence            499999999999999987765 58999998875321   12221    122222222233211100   12369999998


Q ss_pred             cCchhHHHHHHHHHHCCCcEEEeCCC
Q 027650          114 TDASTVYDNVKQATAFGMRSVVYVPH  139 (220)
Q Consensus       114 T~p~~~~~~~~~al~~G~~vVigTtG  139 (220)
                      --.+...+.+......|.-+++|..+
T Consensus        98 vgg~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          98 VGGKQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             CCTHHHHHHHTTEEEEEEEEECCCSS
T ss_pred             CcHHHHHHHHHHhccCceEEEeeccC
Confidence            77666666666666677777888764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.038  Score=42.75  Aligned_cols=61  Identities=23%  Similarity=0.083  Sum_probs=42.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|+ |++|+.+++.+.. =++++.+ +|+..  ...        ......+.++++++.      .+|+|+..
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~-fg~~v~~-~d~~~--~~~--------~~~~~~~~~l~ell~------~sDii~i~  103 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAES-LGMYVYF-YDIEN--KLP--------LGNATQVQHLSDLLN------MSDVVSLH  103 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHH-TTCEEEE-ECSSC--CCC--------CTTCEECSCHHHHHH------HCSEEEEC
T ss_pred             cceEEEEeec-ccchhhhhhhccc-ccceEee-ccccc--cch--------hhhhhhhhhHHHHHh------hccceeec
Confidence            3469999996 9999999998765 4888776 45421  110        112233568999997      68988854

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.73  E-value=0.12  Score=36.19  Aligned_cols=87  Identities=13%  Similarity=0.049  Sum_probs=47.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc-CCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM-SDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~-~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .||+|+|+ |++|.+-++.+.+. +.++.- +++.. ..+...+..   ...+... ..+++..-     .++++|+-.|
T Consensus        13 k~vlVvG~-G~va~~ka~~ll~~-ga~v~v-~~~~~-~~~~~~~~~---~~~i~~~~~~~~~~dl-----~~~~lv~~at   80 (113)
T d1pjqa1          13 RDCLIVGG-GDVAERKARLLLEA-GARLTV-NALTF-IPQFTVWAN---EGMLTLVEGPFDETLL-----DSCWLAIAAT   80 (113)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TBEEEE-EESSC-CHHHHHHHT---TTSCEEEESSCCGGGG-----TTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCeEEE-EeccC-ChHHHHHHh---cCCceeeccCCCHHHh-----CCCcEEeecC
Confidence            58999997 99999999988875 777654 44422 233333332   1122221 11222111     2566666555


Q ss_pred             CchhH-HHHHHHHHHCCCcEE
Q 027650          115 DASTV-YDNVKQATAFGMRSV  134 (220)
Q Consensus       115 ~p~~~-~~~~~~al~~G~~vV  134 (220)
                      ..+.. .+....|.+.|+++=
T Consensus        81 ~d~~~n~~i~~~a~~~~ilVN  101 (113)
T d1pjqa1          81 DDDTVNQRVSDAAESRRIFCN  101 (113)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHHHHHHHcCCEEE
Confidence            43333 455566666766653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.73  E-value=0.028  Score=43.58  Aligned_cols=64  Identities=17%  Similarity=0.122  Sum_probs=42.8

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      ...+|+|+|+ |++|+.+++.+... ++++.+ +|+... ......      .++. +.++++++.      .+|+|+..
T Consensus        43 ~~k~vgiiG~-G~IG~~va~~~~~f-g~~v~~-~d~~~~-~~~~~~------~~~~-~~~l~ell~------~sDiv~~~  105 (184)
T d1ygya1          43 FGKTVGVVGL-GRIGQLVAQRIAAF-GAYVVA-YDPYVS-PARAAQ------LGIE-LLSLDDLLA------RADFISVH  105 (184)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTT-TCEEEE-ECTTSC-HHHHHH------HTCE-ECCHHHHHH------HCSEEEEC
T ss_pred             cceeeeeccc-cchhHHHHHHhhhc-cceEEe-ecCCCC-hhHHhh------cCce-eccHHHHHh------hCCEEEEc
Confidence            3468999997 99999999988764 788875 565321 111111      1222 568999997      69998854


Q ss_pred             c
Q 027650          114 T  114 (220)
Q Consensus       114 T  114 (220)
                      .
T Consensus       106 ~  106 (184)
T d1ygya1         106 L  106 (184)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.71  E-value=0.015  Score=48.81  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=28.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      |||.|.|++|-+|+.+++.+++..+.+|+++
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~   33 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIV   33 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEE
Confidence            5999999999999999999988789998864

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.47  E-value=0.021  Score=43.59  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=28.0

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..+.||+|+|+ |++|..++-.+...+-..=+.++|.
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~   52 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDA   52 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECS
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            34469999997 9999999988887766544456785

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.44  E-value=0.16  Score=40.47  Aligned_cols=77  Identities=26%  Similarity=0.340  Sum_probs=48.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCc-cEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKAR-AVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~-DVVIDfT  114 (220)
                      .++.|.|+++++|+.+++.+.+ .+.+|+. ++++.  .++.                  ++.++    .+. -+..|++
T Consensus         6 K~~lITGas~GIG~aia~~l~~-~G~~V~~-~~r~~--~~l~------------------~~~~~----~~~~~~~~Dv~   59 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAK-EGARLVA-CDIEE--GPLR------------------EAAEA----VGAHPVVMDVA   59 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHH------------------HHHHT----TTCEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHH------------------HHHHH----cCCeEEEEecC
Confidence            3588999999999999999887 4888665 45431  1111                  12111    011 1456778


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTt  138 (220)
                      .++...+.+..+.+.  ++.++|-..
T Consensus        60 ~~~~v~~~~~~~~~~~g~iDilVnnA   85 (242)
T d1ulsa_          60 DPASVERGFAEALAHLGRLDGVVHYA   85 (242)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCceEEEECC
Confidence            888777777666554  577777443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.42  E-value=0.067  Score=40.32  Aligned_cols=96  Identities=16%  Similarity=0.188  Sum_probs=52.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|+|+|+ |.+|...+..+... +.+.+.++|+...-.+..+-.|.   ..+..+  .|+.+.+.++ ....+|++||++
T Consensus        31 ~VlI~G~-G~iG~~~~~~ak~~-g~~~v~~~~~~~~k~~~a~~~Ga---~~~i~~~~~~~~~~i~~~-t~gg~D~vid~~  104 (174)
T d1f8fa2          31 SFVTWGA-GAVGLSALLAAKVC-GASIIIAVDIVESRLELAKQLGA---THVINSKTQDPVAAIKEI-TDGGVNFALEST  104 (174)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHHHTC---SEEEETTTSCHHHHHHHH-TTSCEEEEEECS
T ss_pred             EEEEeCC-CHHHhhhhhccccc-ccceeeeeccHHHHHHHHHHcCC---eEEEeCCCcCHHHHHHHH-cCCCCcEEEEcC
Confidence            6999998 99999999877664 66677777753211111111121   011111  2333332211 112588888888


Q ss_pred             CchhHHHHH-HHHHHCCCcEEEeCC
Q 027650          115 DASTVYDNV-KQATAFGMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~-~~al~~G~~vVigTt  138 (220)
                      ......+.. ......|+-+++|.+
T Consensus       105 G~~~~~~~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2         105 GSPEILKQGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             CCHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             CcHHHHHHHHhcccCceEEEEEeec
Confidence            665555544 334445666666654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.38  E-value=0.024  Score=43.59  Aligned_cols=91  Identities=12%  Similarity=0.156  Sum_probs=53.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcE-EEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGME-VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~e-Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .|.|.|++|.+|...+..+... +.+ ++++.+++   +..                  .++...    ..+|.+||.+.
T Consensus        33 tVLI~gaaGgVG~~aiQlak~~-Ga~~vi~~~~~~---e~~------------------~~l~~~----~gad~vi~~~~   86 (187)
T d1vj1a2          33 TMVVSGAAGACGSLAGQIGHLL-GCSRVVGICGTQ---EKC------------------LFLTSE----LGFDAAVNYKT   86 (187)
T ss_dssp             EEEESSTTSTTGGGHHHHHHHT-TCSEEEEEESSH---HHH------------------HHHHHH----SCCSEEEETTS
T ss_pred             EEEEECCCchhhHHHHHHHHHc-CCcceecccchH---HHH------------------hhhhhc----ccceEEeeccc
Confidence            6999999999999999887654 654 44444331   010                  111111    26788887766


Q ss_pred             chhHHHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcC
Q 027650          116 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKAS  156 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~  156 (220)
                      ++. .+.++.....|+.+|+.+.|  .+..+...+..+..|
T Consensus        87 ~~~-~~~~~~~~~~GvDvv~D~vG--g~~~~~~~~~l~~~G  124 (187)
T d1vj1a2          87 GNV-AEQLREACPGGVDVYFDNVG--GDISNTVISQMNENS  124 (187)
T ss_dssp             SCH-HHHHHHHCTTCEEEEEESSC--HHHHHHHHTTEEEEE
T ss_pred             hhH-HHHHHHHhccCceEEEecCC--chhHHHHhhhccccc
Confidence            554 34444445678888887776  233444444444433

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.33  E-value=0.092  Score=38.87  Aligned_cols=33  Identities=27%  Similarity=0.241  Sum_probs=25.2

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      -||+|+|+ |++|..++-.+...+-..=+..+|.
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~   34 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDV   34 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEec
Confidence            48999998 9999999988877654432447784

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.18  E-value=0.17  Score=40.09  Aligned_cols=32  Identities=25%  Similarity=0.346  Sum_probs=26.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      +..++.|.|+++++|+.+++.+.+ .+.+|+..
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~-~Ga~V~~~   37 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAA-DGHKVAVT   37 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            345799999999999999999886 58887754

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=94.17  E-value=0.19  Score=40.65  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKA   58 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~   58 (220)
                      |||.|.|++|-+|+.+++.+.+.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~   23 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAG   23 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC
Confidence            69999999999999999988763

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.15  Score=40.44  Aligned_cols=94  Identities=21%  Similarity=0.243  Sum_probs=56.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC----------------CCcchhh-----hhcCCCCCCccccC--
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS----------------VGEDIGM-----VCDMEQPLEIPVMS--   92 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~----------------~g~d~g~-----l~g~~~~~gv~v~~--   92 (220)
                      -||+|+|+ |.+|..++..+... |+.=..++|.+.                .|+.-.+     +........+..+.  
T Consensus        31 ~~VliiG~-GglGs~va~~La~~-Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~  108 (247)
T d1jw9b_          31 SRVLIVGL-GGLGCAASQYLASA-GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  108 (247)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCEEEECC-CHHHHHHHHHHHHc-CCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhh
Confidence            48999997 99999999998764 777777888431                1111000     00000011111111  


Q ss_pred             ----CHHHHHhccccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeC
Q 027650           93 ----DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYV  137 (220)
Q Consensus        93 ----dl~~~l~~~~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigT  137 (220)
                          +....+.      ..|++||++..... ...-+.|.++++|+|.|-
T Consensus       109 ~~~~~~~~~~~------~~divid~~d~~~~~~~in~~~~~~~ip~i~g~  152 (247)
T d1jw9b_         109 LDDAELAALIA------EHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGA  152 (247)
T ss_dssp             CCHHHHHHHHH------TSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             hhhcccccccc------ccceeeeccchhhhhhhHHHHHHHhCCCccccc
Confidence                1222232      68999998865544 455578888999998773

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.13  E-value=0.025  Score=42.48  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=20.6

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHh
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTK   57 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~   57 (220)
                      ..+||.|+||+|++|+.++-.+.+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~   25 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGN   25 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHH
Confidence            468999999999999998877653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.05  E-value=0.019  Score=43.03  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=24.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      -||+|+|+ |++|..++-.+...+-+ ||+ .+|.
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~Elv-L~D~   34 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIV-LEDI   34 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEE-EEEe
Confidence            48999997 99999998777665443 665 6785

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.93  E-value=0.037  Score=41.37  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=25.9

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      ..||+|+|+ |++|..++-.+...+-. ||+ .+|.
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~-L~Di   39 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDA   39 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEee
Confidence            459999997 99999999888776544 555 7885

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.92  E-value=0.042  Score=41.65  Aligned_cols=137  Identities=13%  Similarity=0.053  Sum_probs=66.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-cCCHHHHHh---ccccCCCccEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-MSDLTMVLG---SISQSKARAVVID  112 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~~dl~~~l~---~~~~~~~~DVVID  112 (220)
                      +|+|+|+ |.+|...+..+.. -+.+-|-++|+...-.+...-.|.  ..-+.. ..+..+..+   ++.....+|+|||
T Consensus        31 ~VlV~Ga-G~iG~~~~~~ak~-~Ga~~Vi~~~~~~~~~~~a~~lGa--~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid  106 (182)
T d1vj0a2          31 TVVIQGA-GPLGLFGVVIARS-LGAENVIVIAGSPNRLKLAEEIGA--DLTLNRRETSVEERRKAIMDITHGRGADFILE  106 (182)
T ss_dssp             EEEEECC-SHHHHHHHHHHHH-TTBSEEEEEESCHHHHHHHHHTTC--SEEEETTTSCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             EEEEECC-Cccchhheecccc-cccccccccccccccccccccccc--eEEEeccccchHHHHHHHHHhhCCCCceEEee
Confidence            7999997 9999999887765 577433445542110111111110  000111 123322211   1111235899999


Q ss_pred             ccCchhHHHHHHHHHHC-CCcEEEeCCCC-CHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhc
Q 027650          113 FTDASTVYDNVKQATAF-GMRSVVYVPHI-QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS  180 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~-G~~vVigTtG~-~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~  180 (220)
                      ++......+.+..+++. |.=+++|.++- ++-.......+. .+++.+.-+-+++..-  +.++.+.+.
T Consensus       107 ~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~-~k~l~i~G~~~~~~~~--~~~~~~~i~  173 (182)
T d1vj0a2         107 ATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLV-LKNATFKGIWVSDTSH--FVKTVSITS  173 (182)
T ss_dssp             CSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTT-TTTCEEEECCCCCHHH--HHHHHHHHH
T ss_pred             cCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHH-HCCcEEEEEEeCCHHH--HHHHHHHHH
Confidence            88655555555555554 45556665421 111111222222 2357777766666554  444443333

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.84  E-value=0.077  Score=43.35  Aligned_cols=31  Identities=19%  Similarity=0.205  Sum_probs=27.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .||.|+|++|-+|+.+++.+.+. +.++.+..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~-g~~V~~~~   39 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTM-GATVKGYS   39 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEE
Confidence            69999999999999999999875 78877554

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.78  E-value=0.043  Score=41.85  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=26.6

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..||+|+|+ |++|..++-.+...+-+.=+.++|.
T Consensus        20 ~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~   53 (160)
T d1i0za1          20 NNKITVVGV-GQVGMACAISILGKSLADELALVDV   53 (160)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            359999997 9999999988887655544457885

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.75  E-value=0.08  Score=43.54  Aligned_cols=28  Identities=25%  Similarity=0.481  Sum_probs=25.0

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      |.|.|++|-+|+.+++.+.+. +.+++++
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~-g~~V~~~   31 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIEN-GYDCVVA   31 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TCEEEEE
T ss_pred             EEEeCCCcHHHHHHHHHHHHC-cCeEEEE
Confidence            889999999999999999875 7898875

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.52  E-value=0.26  Score=39.46  Aligned_cols=79  Identities=23%  Similarity=0.234  Sum_probs=47.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEccC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (220)
                      .+.|.|+++++|+.+++.+.+ .+.+|+. ++++.  ..+.++.               +.+..   ..... +..|.+.
T Consensus         8 valITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~~---------------~~l~~---~~~~~~~~~Dv~~   65 (268)
T d2bgka1           8 VAIITGGAGGIGETTAKLFVR-YGAKVVI-ADIAD--DHGQKVC---------------NNIGS---PDVISFVHCDVTK   65 (268)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH---------------HHHCC---TTTEEEEECCTTC
T ss_pred             EEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH---------------HHhcC---CCceEEEEccCCC
Confidence            578889999999999999876 4888664 55431  1111111               01110   01111 3347778


Q ss_pred             chhHHHHHHHHHHC--CCcEEEeC
Q 027650          116 ASTVYDNVKQATAF--GMRSVVYV  137 (220)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigT  137 (220)
                      ++...+.+..+.+.  +++++|-.
T Consensus        66 ~~~v~~~~~~~~~~~g~iD~lVnn   89 (268)
T d2bgka1          66 DEDVRNLVDTTIAKHGKLDIMFGN   89 (268)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCcceeccc
Confidence            87777766666554  67777643

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.46  E-value=0.049  Score=40.72  Aligned_cols=33  Identities=30%  Similarity=0.428  Sum_probs=26.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      |||+|+||+|++|+.++-.+...+-+ ||+ .+|.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~-L~D~   34 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLV-LIGR   34 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEE-EEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccc-cccc
Confidence            79999998899999999888776544 544 6775

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.44  E-value=0.2  Score=40.07  Aligned_cols=82  Identities=11%  Similarity=0.122  Sum_probs=51.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc---EEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (220)
                      ..+.|.|+++++|+.+++.+.+ .+..|+. ++++.  +...+.              .+++.+.    ...+   +..|
T Consensus         6 K~~lITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~--------------~~~l~~~----~g~~~~~~~~D   63 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAE-AGCSVVV-ASRNL--EEASEA--------------AQKLTEK----YGVETMAFRCD   63 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHH--------------HHHHHHH----HCCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHH--------------HHHHHHH----hCCcEEEEEcc
Confidence            3688999999999999999887 4888664 45421  111111              1112111    1222   3457


Q ss_pred             ccCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .+.++...+.+..+.+.  ++.++|-..|
T Consensus        64 v~~~~~v~~~~~~~~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          64 VSNYEEVKKLLEAVKEKFGKLDTVVNAAG   92 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            88888888777777664  6888876554

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.33  E-value=0.21  Score=39.88  Aligned_cols=82  Identities=17%  Similarity=0.134  Sum_probs=49.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      ..+.|.|++++||+.+++.+.+ .+..|+ +++++.  +.+.++.               +.+..   ..++. +..|.+
T Consensus         7 K~alVTGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~~~~~~---------------~~~~~---~~~~~~~~~Dv~   64 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVE-EGAKVM-ITGRHS--DVGEKAA---------------KSVGT---PDQIQFFQHDSS   64 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH---------------HHHCC---TTTEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH---------------HHhCC---CCcEEEEEccCC
Confidence            3578889999999999999876 488866 455431  1111111               11110   01222 334778


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++.+.+.+..+.+.  ++.++|-..|
T Consensus        65 ~~~~v~~~~~~~~~~~G~iDiLVnnAg   91 (251)
T d1zk4a1          65 DEDGWTKLFDATEKAFGPVSTLVNNAG   91 (251)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCceEEEeccc
Confidence            888777777766653  6777775443

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.28  E-value=0.1  Score=38.90  Aligned_cols=88  Identities=17%  Similarity=0.175  Sum_probs=44.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccC---C-HHHHHhccccCCCccEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMS---D-LTMVLGSISQSKARAVVID  112 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~---d-l~~~l~~~~~~~~~DVVID  112 (220)
                      +|+|+|+ |.+|-..+..+... +...|.++|+...-.+...-.|.   ..+..+.   + .++.... .....+|++||
T Consensus        31 ~VlI~G~-Gg~g~~~~~~~~~~-g~~~Vi~~~~~~~rl~~a~~~GA---d~~in~~~~~~~~~~~~~~-~~~~G~d~vid  104 (175)
T d1cdoa2          31 TCAVFGL-GAVGLAAVMGCHSA-GAKRIIAVDLNPDKFEKAKVFGA---TDFVNPNDHSEPISQVLSK-MTNGGVDFSLE  104 (175)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTC---CEEECGGGCSSCHHHHHHH-HHTSCBSEEEE
T ss_pred             EEEEEec-CCccchHHHHHHHH-hhchheeecchHHHHHHHHHcCC---cEEEcCCCcchhHHHHHHh-hccCCcceeee
Confidence            6999997 88898887776654 44445556653211111111121   0111111   1 1222211 01135788888


Q ss_pred             ccCchhHHHHHHHHHHCC
Q 027650          113 FTDASTVYDNVKQATAFG  130 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~G  130 (220)
                      ++-.......+..++..|
T Consensus       105 ~~G~~~~~~~a~~~~~~g  122 (175)
T d1cdoa2         105 CVGNVGVMRNALESCLKG  122 (175)
T ss_dssp             CSCCHHHHHHHHHTBCTT
T ss_pred             ecCCHHHHHHHHHHhhCC
Confidence            887766666665554444

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.10  E-value=0.043  Score=44.33  Aligned_cols=110  Identities=9%  Similarity=0.141  Sum_probs=67.1

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .-.+|+|-|. |++|+.+++.+.+ .+..+++. |.+  ...+..+..   ..|.. ..+.++++.     .++||++=+
T Consensus        38 ~g~~v~IqG~-GnVG~~~a~~L~~-~Gakvv~~-d~~--~~~~~~~~~---~~g~~-~~~~~~~~~-----~~cDIl~Pc  103 (230)
T d1leha1          38 EGLAVSVQGL-GNVAKALCKKLNT-EGAKLVVT-DVN--KAAVSAAVA---EEGAD-AVAPNAIYG-----VTCDIFAPC  103 (230)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHH-TTCEEEEE-CSC--HHHHHHHHH---HHCCE-ECCGGGTTT-----CCCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHH-CCCEEEee-ccc--HHHHHHHHH---hcCCc-ccCCccccc-----ccccEeccc
Confidence            3469999996 9999999999877 58999864 321  111222221   11222 335677776     489999987


Q ss_pred             cCchhHH-HHHHHHHHCCCcEEEeCC--CCC-HHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          114 TDASTVY-DNVKQATAFGMRSVVYVP--HIQ-LETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       114 T~p~~~~-~~~~~al~~G~~vVigTt--G~~-~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      ......- +++.   +-...+|+|-.  +++ ++..+.|    +++  .+++.|.|-
T Consensus       104 A~~~~I~~~~~~---~l~ak~Ive~ANn~~t~~ea~~~L----~~r--GI~~iPD~l  151 (230)
T d1leha1         104 ALGAVLNDFTIP---QLKAKVIAGSADNQLKDPRHGKYL----HEL--GIVYAPDYV  151 (230)
T ss_dssp             SCSCCBSTTHHH---HCCCSEECCSCSCCBSSHHHHHHH----HHH--TCEECCHHH
T ss_pred             ccccccChHHhh---ccCccEEEecccCCCCCchHHHHH----Hhh--CcEEEeehh
Confidence            7655553 3433   45678999866  455 4332222    233  557777653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.05  E-value=0.071  Score=39.71  Aligned_cols=121  Identities=14%  Similarity=0.095  Sum_probs=62.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCH-HHHHhccccCCCccEEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDL-TMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl-~~~l~~~~~~~~~DVVIDf  113 (220)
                      +|+|+|++|.+|...+..+......++ -++++.....+..+-.|.   ..+..+  .|+ ++.... .....+|++||+
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V-~~~~~~~~~~~~~~~~Ga---~~~i~~~~~~~~~~~~~~-~~~~~~d~vid~  104 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATI-IGVDVREEAVEAAKRAGA---DYVINASMQDPLAEIRRI-TESKGVDAVIDL  104 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEE-EEEESSHHHHHHHHHHTC---SEEEETTTSCHHHHHHHH-TTTSCEEEEEES
T ss_pred             EEEEEeccccceeeeeecccccccccc-cccccchhhHHHHHHcCC---ceeeccCCcCHHHHHHHH-hhcccchhhhcc
Confidence            699999889999999988876643454 455542111111111221   011111  222 222221 112358999998


Q ss_pred             cCchhHHHHHHHHHH-CCCcEEEeCCC----CCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          114 TDASTVYDNVKQATA-FGMRSVVYVPH----IQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       114 T~p~~~~~~~~~al~-~G~~vVigTtG----~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      +......+.+..+++ .|.-+++|.++    ++..   .+  .-++  +.+.-+.+++..-
T Consensus       105 ~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~---~~--~~k~--i~i~Gs~~~~~~d  158 (170)
T d1jvba2         105 NNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAP---LI--TLSE--IQFVGSLVGNQSD  158 (170)
T ss_dssp             CCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHH---HH--HHHT--CEEEECCSCCHHH
T ss_pred             cccchHHHhhhhhcccCCEEEEeccccCccccCHH---HH--HhCC--cEEEEEecCCHHH
Confidence            876666555544444 45555566553    2221   12  2333  7777666666543

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=93.02  E-value=0.38  Score=34.56  Aligned_cols=104  Identities=10%  Similarity=0.031  Sum_probs=63.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      |||.+.|. -.--....+.+.+..++++.-.  +...                  ..+.-+.+      .++|+++-+..
T Consensus         1 MKIl~~~~-~~~e~~~l~~~~~~~~~~v~~~--~~~~------------------~~~~~~~~------~~~d~ii~~~~   53 (131)
T d1dxya2           1 MKIIAYGA-RVDEIQYFKQWAKDTGNTLEYH--TEFL------------------DENTVEWA------KGFDGINSLQT   53 (131)
T ss_dssp             CEEEECSC-CTTTHHHHHHHHHHHCCEEEEC--SSCC------------------CTTGGGGG------TTCSEEEECCS
T ss_pred             CEEEEEec-CcCcHHHHHHHHHHcCeEEEEc--CCCC------------------CHHHHHHh------cCCCEEEEecC
Confidence            68888875 4556666666665557766431  1100                  01111222      37998775554


Q ss_pred             chhHHHHHHHHHHCCCcEEEeC-CCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHH
Q 027650          116 ASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPTLSIGSI  170 (220)
Q Consensus       116 p~~~~~~~~~al~~G~~vVigT-tG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~  170 (220)
                      .....+.+..+-+.+..+|.-. .|++-=+    .++|+++|+++.-.|+++.-.+
T Consensus        54 ~~~~~~vl~~l~~~~Lk~I~~~~vG~d~ID----~~~a~~~gI~V~n~P~~~~~aV  105 (131)
T d1dxya2          54 TPYAAGVFEKMHAYGIKFLTIRNVGTDNID----MTAMKQYGIRLSNVPAYTETAV  105 (131)
T ss_dssp             SCBCHHHHHHHHHTTCCEEEESSSCCTTBC----HHHHHHTTCEEECCTTSSHHHH
T ss_pred             CCCCHHHHhhcccCCeEEEEEccccccccc----ccccccceEEEEeCCCCCchhH
Confidence            4444566666667788887533 4776433    3566779999999999987664

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.99  E-value=0.15  Score=37.50  Aligned_cols=128  Identities=13%  Similarity=0.080  Sum_probs=63.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|+|+|+ |.+|...+..+.. .+.+++++ ++.....+..+-.|.   ..+..+  ++..+.+...  ..+.|.+|+++
T Consensus        30 ~vlv~G~-G~iG~~a~~~a~~-~g~~v~~~-~~~~~r~~~~k~~Ga---~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~  101 (168)
T d1rjwa2          30 WVAIYGI-GGLGHVAVQYAKA-MGLNVVAV-DIGDEKLELAKELGA---DLVVNPLKEDAAKFMKEK--VGGVHAAVVTA  101 (168)
T ss_dssp             EEEEECC-STTHHHHHHHHHH-TTCEEEEE-CSCHHHHHHHHHTTC---SEEECTTTSCHHHHHHHH--HSSEEEEEESS
T ss_pred             EEEEeec-ccchhhhhHHHhc-CCCeEecc-CCCHHHhhhhhhcCc---ceecccccchhhhhcccc--cCCCceEEeec
Confidence            7999997 9999988877665 57786654 432111111111221   111111  2444433211  12466666677


Q ss_pred             CchhHHHHHHHHHHC-CCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHH
Q 027650          115 DASTVYDNVKQATAF-GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI  177 (220)
Q Consensus       115 ~p~~~~~~~~~al~~-G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~  177 (220)
                      ......+....+++. |+-+++|.++-+ .......-.-+  ++.++-+-+++.-.  +.++.+
T Consensus       102 ~~~~~~~~a~~~l~~~G~i~~~g~~~~~-~~~~~~~~~~~--~~~i~gs~~~~~~~--~~~~l~  160 (168)
T d1rjwa2         102 VSKPAFQSAYNSIRRGGACVLVGLPPEE-MPIPIFDTVLN--GIKIIGSIVGTRKD--LQEALQ  160 (168)
T ss_dssp             CCHHHHHHHHHHEEEEEEEEECCCCSSE-EEEEHHHHHHT--TCEEEECCSCCHHH--HHHHHH
T ss_pred             CCHHHHHHHHHHhccCCceEecccccCC-CCCCHHHHHHC--CcEEEEEeeCCHHH--HHHHHH
Confidence            666666666666654 455555554321 11112222333  47777665555433  455543

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=92.89  E-value=0.1  Score=38.55  Aligned_cols=32  Identities=19%  Similarity=0.180  Sum_probs=25.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||+|+|+ |++|..++-.+...+-.+|+ .+|.
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~-l~D~   33 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIV-LLDI   33 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEE-EECS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEE-EEee
Confidence            49999997 99999998887776556855 4775

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=92.83  E-value=0.063  Score=40.08  Aligned_cols=32  Identities=22%  Similarity=0.216  Sum_probs=24.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCc-EEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGM-EVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~-eLvg~vd~   69 (220)
                      -||+|+|+ |++|..++-.+....-+ ||+ .+|.
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elv-L~Di   34 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDA   34 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECS
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEec
Confidence            38999997 99999998877765433 565 6785

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.42  Score=38.10  Aligned_cols=82  Identities=15%  Similarity=0.250  Sum_probs=51.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE---EEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---VIDf  113 (220)
                      .+.|.|+++++|+.+++.+.+ .+..|+.. +++.  .++.++.              +++...   ..+..+   ..|.
T Consensus        12 v~lITGas~GIG~aiA~~la~-~G~~Vv~~-~r~~--~~l~~~~--------------~~l~~~---~~~~~~~~~~~Dl   70 (257)
T d1xg5a_          12 LALVTGASGGIGAAVARALVQ-QGLKVVGC-ARTV--GNIEELA--------------AECKSA---GYPGTLIPYRCDL   70 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TTCEEEEE-ESCH--HHHHHHH--------------HHHHHT---TCSSEEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEEE-ECCH--HHHHHHH--------------HHHHhc---CCCceEEEEEccC
Confidence            489999999999999999987 58887764 4421  1122111              111110   012233   3477


Q ss_pred             cCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      +.++.+.+.+..+.+.  ++.++|-..|
T Consensus        71 s~~~~v~~~v~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          71 SNEEDILSMFSAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            8888888877777765  6778876654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.77  E-value=0.055  Score=45.31  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=26.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      +||.|.|++|-+|+.+++.+.+ .+.+++++
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~-~g~~V~~i   31 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSK-KNYEVCIV   31 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHH-CcCEEEEE
Confidence            6999999999999999999987 47898765

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.74  E-value=0.063  Score=43.30  Aligned_cols=31  Identities=16%  Similarity=0.297  Sum_probs=27.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      ||.|.|++|.+|+.+++.+.+. +.++.++..
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~-g~~V~~~~r   32 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEK-GYRVHGLVA   32 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-cCEEEEEEC
Confidence            7999999999999999999875 899987754

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.70  E-value=0.022  Score=43.89  Aligned_cols=33  Identities=15%  Similarity=0.199  Sum_probs=27.4

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      -.+|.|.|++|.+|+.+++.+.+. +.+++. +++
T Consensus        23 gK~vlItGasgGIG~~ia~~la~~-G~~V~~-~~r   55 (191)
T d1luaa1          23 GKKAVVLAGTGPVGMRSAALLAGE-GAEVVL-CGR   55 (191)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHT-TCEEEE-EES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhh-ccchhh-ccc
Confidence            368999999999999999999875 788765 444

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.66  E-value=0.049  Score=41.72  Aligned_cols=100  Identities=6%  Similarity=0.061  Sum_probs=51.8

Q ss_pred             eEEEE-cCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhh-cCCCCCCccccC-----CHHHHHhcc--ccCCCc
Q 027650           37 KVIIN-GAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVC-DMEQPLEIPVMS-----DLTMVLGSI--SQSKAR  107 (220)
Q Consensus        37 kV~V~-Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~-g~~~~~gv~v~~-----dl~~~l~~~--~~~~~~  107 (220)
                      +|.|+ |++|.+|...+..+... ++++++++.+...-++..+.+ .++ ...+..++     +..+.+.+.  .....+
T Consensus        31 ~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lG-ad~vi~~~~~~~~~~~~~v~~~~~~~g~~v  108 (189)
T d1gu7a2          31 DWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELG-ATQVITEDQNNSREFGPTIKEWIKQSGGEA  108 (189)
T ss_dssp             CEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHT-CSEEEEHHHHHCGGGHHHHHHHHHHHTCCE
T ss_pred             EEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhcc-ccEEEeccccchhHHHHHHHHHHhhccCCc
Confidence            36665 78899999999877664 899999886532111111111 110 01111111     111111100  001358


Q ss_pred             cEEEEccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          108 AVVIDFTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       108 DVVIDfT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      |+++|+...+.....+......|.-+++|..
T Consensus       109 dvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~  139 (189)
T d1gu7a2         109 KLALNCVGGKSSTGIARKLNNNGLMLTYGGM  139 (189)
T ss_dssp             EEEEESSCHHHHHHHHHTSCTTCEEEECCCC
T ss_pred             eEEEECCCcchhhhhhhhhcCCcEEEEECCc
Confidence            8999887766555555554555555556643

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=92.56  E-value=0.42  Score=37.96  Aligned_cols=33  Identities=33%  Similarity=0.474  Sum_probs=26.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ..+.|.|++++||+.+++.+.+ .+..|+ +++++
T Consensus         6 K~alITGas~GIG~aia~~la~-~G~~V~-~~~~~   38 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAR-EGALVA-LCDLR   38 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECC
Confidence            3688999999999999999886 488865 45553

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.46  E-value=0.44  Score=38.12  Aligned_cols=81  Identities=19%  Similarity=0.183  Sum_probs=50.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc---EEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (220)
                      .+.|.|+++++|+.+++.+.+ .+..|+....+..  ..+.++               .+.+..    ...+   +..|.
T Consensus         9 ~alITGas~GIG~aia~~la~-~G~~Vv~~~r~~~--~~~~~~---------------~~~~~~----~g~~~~~~~~Dv   66 (261)
T d1geea_           9 VVVITGSSTGLGKSMAIRFAT-EKAKVVVNYRSKE--DEANSV---------------LEEIKK----VGGEAIAVKGDV   66 (261)
T ss_dssp             EEEETTCSSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----TTCEEEEEECCT
T ss_pred             EEEEeCCCcHHHHHHHHHHHH-CCCEEEEEeCCcH--HHHHHH---------------HHHHHh----cCCcEEEEEccC
Confidence            578889999999999999886 4888875443210  011111               111111    1233   33477


Q ss_pred             cCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      |.++.+.+.+..+.+.  ++.++|-..|
T Consensus        67 t~~~~v~~~~~~~~~~~G~iDiLVnnAG   94 (261)
T d1geea_          67 TVESDVINLVQSAIKEFGKLDVMINNAG   94 (261)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEeeccce
Confidence            8888877777776664  6788776654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.43  E-value=0.11  Score=38.42  Aligned_cols=121  Identities=12%  Similarity=0.045  Sum_probs=60.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCcccc--CCHHHHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVM--SDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~--~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      +|+|+|+ |.+|...+..+... +.+++++ |+...-.+...-.|.   ..+..+  ++..+.+.+  .....|++|+++
T Consensus        30 ~VlV~Ga-G~vG~~~~~~ak~~-G~~Vi~~-~~~~~~~~~a~~~Ga---~~~i~~~~~~~~~~~~~--~~~g~~~~i~~~  101 (166)
T d1llua2          30 WVAISGI-GGLGHVAVQYARAM-GLHVAAI-DIDDAKLELARKLGA---SLTVNARQEDPVEAIQR--DIGGAHGVLVTA  101 (166)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHT-TCEEEEE-ESCHHHHHHHHHTTC---SEEEETTTSCHHHHHHH--HHSSEEEEEECC
T ss_pred             EEEEeec-cccHHHHHHHHHHc-CCcccee-cchhhHHHhhhccCc---cccccccchhHHHHHHH--hhcCCccccccc
Confidence            7999997 99999998877665 7887765 432101111111121   111111  233333221  012567777777


Q ss_pred             CchhHHHHHHHHHH-CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHH
Q 027650          115 DASTVYDNVKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (220)
Q Consensus       115 ~p~~~~~~~~~al~-~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~G  168 (220)
                      ......+....+++ .|+-+++|.++-. .......-.-  +++.+.-+-.++.-
T Consensus       102 ~~~~~~~~~~~~l~~~G~iv~~G~~~~~-~~~~~~~~~~--k~~~i~Gs~~~~~~  153 (166)
T d1llua2         102 VSNSAFGQAIGMARRGGTIALVGLPPGD-FPTPIFDVVL--KGLHIAGSIVGTRA  153 (166)
T ss_dssp             SCHHHHHHHHTTEEEEEEEEECCCCSSE-EEEEHHHHHH--TTCEEEECCSCCHH
T ss_pred             ccchHHHHHHHHhcCCcEEEEEEecCCC-ccCCHHHHHh--CCcEEEEEeecCHH
Confidence            65555555544444 4565666765321 1111111122  34777766555543

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=92.24  E-value=0.33  Score=37.93  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=24.6

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      |.|.|++|-+|+.+++.+.+....++++ +|.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~-~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILV-VDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEE-EEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEE-EEC
Confidence            7899999999999999998763245554 564

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=92.24  E-value=0.083  Score=40.29  Aligned_cols=70  Identities=20%  Similarity=0.133  Sum_probs=41.4

Q ss_pred             ceEEEEcCCCHHHHH--HHHHHHhcCC---cEEEEEEecCCC-----Ccchhhhh-cCCCCCCccccCCHHHHHhccccC
Q 027650           36 IKVIINGAVKEIGRA--AVIAVTKARG---MEVAGAIDSHSV-----GEDIGMVC-DMEQPLEIPVMSDLTMVLGSISQS  104 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~--i~~~i~~~~~---~eLvg~vd~~~~-----g~d~g~l~-g~~~~~gv~v~~dl~~~l~~~~~~  104 (220)
                      |||+|+|+ |..|..  ++..+...+.   -||+ .+|.+..     ..+..... .......+..++|+++++.     
T Consensus         3 mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eiv-L~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~-----   75 (171)
T d1obba1           3 VKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVT-LMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVII-----   75 (171)
T ss_dssp             CEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEE-EECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT-----
T ss_pred             cEEEEECC-CHHHhHHHHHHHHHhccccCCCEEE-EEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhccc-----
Confidence            69999997 999965  3444554444   3666 5775310     01111111 0112345556789999996     


Q ss_pred             CCccEEEEc
Q 027650          105 KARAVVIDF  113 (220)
Q Consensus       105 ~~~DVVIDf  113 (220)
                       ++|+||..
T Consensus        76 -dad~Vv~~   83 (171)
T d1obba1          76 -DADFVINT   83 (171)
T ss_dssp             -TCSEEEEC
T ss_pred             -CCCeEeee
Confidence             89998843

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.07  E-value=0.33  Score=38.67  Aligned_cols=84  Identities=21%  Similarity=0.191  Sum_probs=49.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      ..+.|.|+++++|+.+++.+.+ .+..|+. ++++.  .+..+..              +++....  ..++- +..|.|
T Consensus        10 K~alITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~~~~~~--------------~~~~~~~--g~~~~~~~~Dv~   69 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAA-AGANVAV-IYRSA--ADAVEVT--------------EKVGKEF--GVKTKAYQCDVS   69 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH-TTEEEEE-EESSC--TTHHHHH--------------HHHHHHH--TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHHh--CCceEEEEccCC
Confidence            3688899999999999999987 5888665 45432  1111111              1111100  01121 345778


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++...+.+..+.+.  ++.++|-..|
T Consensus        70 ~~~~v~~~~~~~~~~~g~iDilVnnAg   96 (260)
T d1h5qa_          70 NTDIVTKTIQQIDADLGPISGLIANAG   96 (260)
T ss_dssp             CHHHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCcEeccccc
Confidence            888887777766654  4666665443

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.02  E-value=0.076  Score=43.54  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=27.1

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      .||.|.|++|-+|+.+++.+.+. +.+++++.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~-g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEA-GYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHT-TCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHC-cCEEEEEE
Confidence            48999999999999999999875 78888754

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.94  E-value=0.22  Score=39.77  Aligned_cols=80  Identities=24%  Similarity=0.280  Sum_probs=50.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .++.|.|+++++|+.+++.+.+ .+.+|+. ++++.  +.+.                  ++.++++  .++. +..|.|
T Consensus         6 K~alVTGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~l~------------------~~~~~~~--~~~~~~~~Dvt   61 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVR-EGARVAI-ADINL--EAAR------------------ATAAEIG--PAACAIALDVT   61 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHH-TTEEEEE-EESCH--HHHH------------------HHHHHHC--TTEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHH------------------HHHHHhC--CceEEEEeeCC
Confidence            4688999999999999999887 4888764 45431  1111                  1111100  1222 345778


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++...+.+..+.+.  ++.++|-..|
T Consensus        62 ~~~~v~~~~~~~~~~~g~iDilVnnAg   88 (256)
T d1k2wa_          62 DQASIDRCVAELLDRWGSIDILVNNAA   88 (256)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCccEEEeecc
Confidence            888777777766654  6777776554

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.92  E-value=0.26  Score=38.89  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCC-cEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARG-MEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~-~eLvg~v   67 (220)
                      ..|.|.|+++++|+++++.+.+... +.|+...
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~   36 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATA   36 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEe
Confidence            4688999999999999999987532 4565543

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.89  E-value=0.27  Score=39.93  Aligned_cols=84  Identities=15%  Similarity=0.149  Sum_probs=45.1

Q ss_pred             eEE-EEcCCCHHHHHHHHHHHhcCCcEE--EEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccc-cCCCcc-EEE
Q 027650           37 KVI-INGAVKEIGRAAVIAVTKARGMEV--AGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSIS-QSKARA-VVI  111 (220)
Q Consensus        37 kV~-V~Ga~GrMG~~i~~~i~~~~~~eL--vg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~-~~~~~D-VVI  111 (220)
                      ||+ |.||++++|+.+++.+.+ .+..+  +....++.  +....               +++....+. ...++. +.+
T Consensus         3 kVvlITGassGIG~a~A~~la~-~Ga~v~~v~~~~~~~--~~~~~---------------l~~~~~~~~~~~~~~~~~~~   64 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLAS-DPSQSFKVYATLRDL--KTQGR---------------LWEAARALACPPGSLETLQL   64 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHT-CTTCCEEEEEEESCG--GGTHH---------------HHHHHHHTTCCTTSEEEEEC
T ss_pred             CEEEEccCCCHHHHHHHHHHHH-CCCCeEEEEEecCCh--hhhHH---------------HHHHHHHHhccCCceEEEec
Confidence            665 569999999999999886 45554  33333321  11111               111111000 001222 335


Q ss_pred             EccCchhHHHHHHHHHHCCCcEEEeCC
Q 027650          112 DFTDASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       112 DfT~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      |.|.++...+.+..+.+.++.+++-..
T Consensus        65 Dv~~~~~~~~~~~~~~~g~idilvnna   91 (285)
T d1jtva_          65 DVRDSKSVAAARERVTEGRVDVLVCNA   91 (285)
T ss_dssp             CTTCHHHHHHHHHTCTTSCCSEEEECC
T ss_pred             cccchHhhhhhhhhccccchhhhhhcc
Confidence            677777776666666566677776554

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.089  Score=42.86  Aligned_cols=31  Identities=26%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             eE-EEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        37 kV-~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      || .|.|++|.+|+.+++.+.+. +.+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~-g~~V~~i~r   33 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEK-GYEVHGIVR   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHC-cCEEEEEEC
Confidence            78 79999999999999999874 999998754

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.67  E-value=0.2  Score=43.57  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=26.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||.|+|+ |++|..+++.+.. .|+.=+-++|.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~-~Gvg~i~lvD~   69 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLAL-SGFRQIHVIDM   69 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHT-TTCCCEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHH-cCCCeEEEEEC
Confidence            49999998 9999999999875 47755667884

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.64  E-value=0.82  Score=36.09  Aligned_cols=79  Identities=15%  Similarity=0.134  Sum_probs=49.2

Q ss_pred             eE-EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc---EEEE
Q 027650           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (220)
Q Consensus        37 kV-~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (220)
                      || .|.|++++||+.+++.+.+ .+..|+. ++++.  ..+.++.              +++-.     ...+   +..|
T Consensus         3 KValITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~l~~~~--------------~~l~~-----~g~~~~~~~~D   59 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGK-EGLRVFV-CARGE--EGLRTTL--------------KELRE-----AGVEADGRTCD   59 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEee
Confidence            45 6789999999999999876 5888754 45531  1111111              11111     1222   3457


Q ss_pred             ccCchhHHHHHHHHHHC--CCcEEEeCC
Q 027650          113 FTDASTVYDNVKQATAF--GMRSVVYVP  138 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTt  138 (220)
                      .|.++...+.+..+.+.  ++.++|-..
T Consensus        60 vs~~~~v~~~~~~~~~~~g~iDilVnnA   87 (257)
T d2rhca1          60 VRSVPEIEALVAAVVERYGPVDVLVNNA   87 (257)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCEEEecc
Confidence            88888888888777664  477887544

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.18  Score=40.12  Aligned_cols=79  Identities=20%  Similarity=0.366  Sum_probs=47.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (220)
                      .+.|.|+++++|+.+++.+.+ .+..|+. ++++.  +.+.++.               +.+..    ...-+..|.|.+
T Consensus         6 ~alITGas~GIG~a~a~~l~~-~G~~Vv~-~~r~~--~~l~~~~---------------~~~~~----~~~~~~~Dv~~~   62 (243)
T d1q7ba_           6 IALVTGASRGIGRAIAETLAA-RGAKVIG-TATSE--NGAQAIS---------------DYLGA----NGKGLMLNVTDP   62 (243)
T ss_dssp             EEEESSCSSHHHHHHHHHHHH-TTCEEEE-EESSH--HHHHHHH---------------HHHGG----GEEEEECCTTCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EeCCH--HHHHHHH---------------HHhCC----CCcEEEEEecCH
Confidence            567779999999999999877 4888864 45431  1111111               11110    011245677777


Q ss_pred             hhHHHHHHHHHHC--CCcEEEeCC
Q 027650          117 STVYDNVKQATAF--GMRSVVYVP  138 (220)
Q Consensus       117 ~~~~~~~~~al~~--G~~vVigTt  138 (220)
                      +...+.+..+.+.  ++.++|-.-
T Consensus        63 ~~v~~~~~~~~~~~g~iDilVnnA   86 (243)
T d1q7ba_          63 ASIESVLEKIRAEFGEVDILVNNA   86 (243)
T ss_dssp             HHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             HHhhhhhhhhhcccCCcceehhhh
Confidence            7777777666654  466776554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.50  E-value=0.85  Score=36.00  Aligned_cols=81  Identities=27%  Similarity=0.388  Sum_probs=48.1

Q ss_pred             eE-EEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           37 KV-IINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        37 kV-~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      || .|.|+++++|+.+++.+.+ .+..|+. ++++.  .++.++.              +++-..   ..++. +..|.|
T Consensus         2 KValITGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~l~~~~--------------~~i~~~---g~~~~~~~~Dv~   60 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVK-DGFAVAI-ADYND--ATAKAVA--------------SEINQA---GGHAVAVKVDVS   60 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhc---CCcEEEEEeeCC
Confidence            66 6789999999999999987 4888764 55531  1111111              111110   01222 335778


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTt  138 (220)
                      .++...+.+..+.+.  ++.++|-..
T Consensus        61 ~~~~v~~~~~~~~~~~g~iDilVnnA   86 (255)
T d1gega_          61 DRDQVFAAVEQARKTLGGFDVIVNNA   86 (255)
T ss_dssp             SHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCccEEEecc
Confidence            888877777776653  477777443

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.47  E-value=0.11  Score=42.52  Aligned_cols=32  Identities=22%  Similarity=0.193  Sum_probs=27.3

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      +.+|.|.|++|-+|+.+++.+.+. +.++.++.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~-g~~V~~~d   47 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKL-DQKVVGLD   47 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHC-cCEEEEEE
Confidence            458899999999999999999874 88988853

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=91.40  E-value=0.69  Score=36.48  Aligned_cols=80  Identities=19%  Similarity=0.188  Sum_probs=49.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEccC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (220)
                      .+.|.|++++||+.+++.+.+ .+..|+. ++++.. +..                  ++.+...  ..++- +..|.|.
T Consensus         7 valVTGas~GIG~aia~~la~-~Ga~V~~-~~~~~~-~~~------------------~~~~~~~--g~~~~~~~~Dvs~   63 (247)
T d2ew8a1           7 LAVITGGANGIGRAIAERFAV-EGADIAI-ADLVPA-PEA------------------EAAIRNL--GRRVLTVKCDVSQ   63 (247)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESSCC-HHH------------------HHHHHHT--TCCEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCch-HHH------------------HHHHHHc--CCcEEEEEeeCCC
Confidence            578889999999999999876 5888765 454321 111                  1111110  01121 3457788


Q ss_pred             chhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      ++...+.+..+.+.  ++.++|-.-|
T Consensus        64 ~~~v~~~~~~~~~~~G~iDilVnnAG   89 (247)
T d2ew8a1          64 PGDVEAFGKQVISTFGRCDILVNNAG   89 (247)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            88877777766664  5777775544

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.33  E-value=0.63  Score=37.09  Aligned_cols=32  Identities=28%  Similarity=0.400  Sum_probs=26.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..+.|.|++++||+.+++.+.+ .+.+|+ ++++
T Consensus         6 K~alVTGas~GIG~aia~~la~-~Ga~V~-~~~r   37 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVA-AGARVV-LADV   37 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHH-TTCEEE-EEES
T ss_pred             CEEEEeCcCCHHHHHHHHHHHH-CCCEEE-EEEC
Confidence            3689999999999999999886 488865 4554

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.33  E-value=0.068  Score=39.93  Aligned_cols=27  Identities=19%  Similarity=0.476  Sum_probs=22.9

Q ss_pred             CCCceEEEEcCCCHHHHHHHHHHHhcC
Q 027650           33 QSNIKVIINGAVKEIGRAAVIAVTKAR   59 (220)
Q Consensus        33 ~~~ikV~V~Ga~GrMG~~i~~~i~~~~   59 (220)
                      ...|||.|+||+|++|+.++-.+...+
T Consensus         2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           2 KAPVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            356899999999999999998887644

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.18  E-value=0.16  Score=38.13  Aligned_cols=126  Identities=13%  Similarity=0.182  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcC-CCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~-~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      .+|.|+|+ |+.++.++-.+.+. +.+ +-++.++.  ..+.++... .....+.. .++++...     .++|++|.+|
T Consensus        19 k~vlIlGa-GGaarai~~al~~~-g~~-i~I~nRt~--~ka~~l~~~~~~~~~~~~-~~~~~~~~-----~~~dliIN~T   87 (170)
T d1nyta1          19 LRILLIGA-GGASRGVLLPLLSL-DCA-VTITNRTV--SRAEELAKLFAHTGSIQA-LSMDELEG-----HEFDLIINAT   87 (170)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCE-EEEECSSH--HHHHHHHHHTGGGSSEEE-CCSGGGTT-----CCCSEEEECC
T ss_pred             CEEEEECC-cHHHHHHHHHhccc-ceE-EEeccchH--HHHHHHHHHHhhcccccc-cccccccc-----cccceeeccc
Confidence            58999997 99999999888765 677 55676642  122222211 00112222 23333332     3799999887


Q ss_pred             CchhHHHH--H-HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          115 DASTVYDN--V-KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       115 ~p~~~~~~--~-~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      +.....+.  . ...+..+ .+|.-. -+++.+ ..+.+.|++.|...++.   .+++ |+.|++.+.
T Consensus        88 p~G~~~~~~~~~~~~~~~~-~~v~D~-vY~P~~-T~ll~~A~~~G~~~~i~---Gl~M-Li~Qa~~~f  148 (170)
T d1nyta1          88 SSGISGDIPAIPSSLIHPG-IYCYDM-FYQKGK-TPFLAWCEQRGSKRNAD---GLGM-LVAQAAHAF  148 (170)
T ss_dssp             SCGGGTCCCCCCGGGCCTT-CEEEES-CCCSSC-CHHHHHHHHTTCCEEEC---THHH-HHHHHHHHH
T ss_pred             ccCcccCCCCCcHHHhccC-cEEEEe-ecCCCC-CHHHHHHHHcCCCcccC---CHHH-HHHHHHHHH
Confidence            64332110  0 0111222 233211 123322 23566777767654441   4555 555555444

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.07  E-value=0.59  Score=37.20  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=49.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc---EEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (220)
                      ..+.|.|++++||+.+++.+.+ .+..|+. ++++.  +++.++.              +++..     ....   +..|
T Consensus         9 K~alITGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~l~~~~--------------~~~~~-----~g~~~~~~~~D   65 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELAS-LGASVYT-CSRNQ--KELNDCL--------------TQWRS-----KGFKVEASVCD   65 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCEEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCCceEEEee
Confidence            3578999999999999999887 4888765 45431  1121111              11111     1222   3457


Q ss_pred             ccCchhHHHHHHHHHHC---CCcEEEeCCC
Q 027650          113 FTDASTVYDNVKQATAF---GMRSVVYVPH  139 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~---G~~vVigTtG  139 (220)
                      .+.++...+.+..+.+.   .+.++|-..|
T Consensus        66 v~~~~~v~~~~~~~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          66 LSSRSERQELMNTVANHFHGKLNILVNNAG   95 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCceEEEECCc
Confidence            78888887777666552   3788876654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.01  E-value=0.4  Score=38.33  Aligned_cols=83  Identities=13%  Similarity=0.119  Sum_probs=49.7

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      ..+.|.|+++++|+.+++.+.+. +..|+. ++++.  .++.++.              +++-..   ..++. +..|.+
T Consensus         9 K~alVTGas~GIG~aiA~~la~~-Ga~V~~-~~r~~--~~l~~~~--------------~~~~~~---~~~~~~~~~Dv~   67 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGF-GAVIHT-CARNE--YELNECL--------------SKWQKK---GFQVTGSVCDAS   67 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-TCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-CCEEEE-EECCH--HHHHHHH--------------HHHHhc---CCceEEEeccCC
Confidence            47899999999999999998874 888765 45421  1121111              111110   01222 345777


Q ss_pred             CchhHHHHHHHHHHC--C-CcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--G-MRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G-~~vVigTtG  139 (220)
                      .++...+.+..+.+.  | +.+++-..|
T Consensus        68 ~~~~v~~~~~~~~~~~~g~idilvnnAG   95 (259)
T d1xq1a_          68 LRPEREKLMQTVSSMFGGKLDILINNLG   95 (259)
T ss_dssp             SHHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CHHHHHHHHHHHHHHhCCCccccccccc
Confidence            888777777666553  4 677765543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.81  E-value=0.34  Score=37.23  Aligned_cols=31  Identities=29%  Similarity=0.275  Sum_probs=22.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +|+|+|| |.+|...+..+... +..-+.++|+
T Consensus        28 tVlV~Ga-G~vGl~a~~~ak~~-ga~~Vi~~d~   58 (195)
T d1kola2          28 TVYVAGA-GPVGLAAAASARLL-GAAVVIVGDL   58 (195)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHT-TCSEEEEEES
T ss_pred             EEEEECc-CHHHHHHHHHHHhh-cccceeeecc
Confidence            7999997 99998888776654 5544555665

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.67  E-value=0.23  Score=38.95  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=26.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+|.|.|++|++|+.+++.+.+ .+.+++. +|.
T Consensus         3 K~vlITGas~GIG~a~a~~l~~-~G~~V~~-~~~   34 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRA-RNWWVAS-IDV   34 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-TTCEEEE-EES
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            4899999999999999999886 5888765 443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.65  E-value=0.64  Score=36.99  Aligned_cols=82  Identities=13%  Similarity=0.176  Sum_probs=51.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccE---EEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAV---VID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DV---VID  112 (220)
                      .++.|.|+++++|+.+++.+.+. +.+|+....+..  +.+.++               .+.+.+    ...++   ..|
T Consensus        19 K~~lITGas~GIG~aia~~la~~-Ga~Vvi~~~~~~--~~~~~~---------------~~~~~~----~g~~~~~~~~D   76 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRR-GCKVIVNYANST--ESAEEV---------------VAAIKK----NGSDAACVKAN   76 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCH--HHHHHH---------------HHHHHH----TTCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCch--HHHHHH---------------HHHHHh----hCCceeeEeCC
Confidence            47899999999999999998874 888775432211  111111               111111    12333   246


Q ss_pred             ccCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .+.++.+.+.+..+.+.  ++.+++-..|
T Consensus        77 ~~~~~~v~~~~~~~~~~~g~idilV~nag  105 (272)
T d1g0oa_          77 VGVVEDIVRMFEEAVKIFGKLDIVCSNSG  105 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCccccccc
Confidence            78888888777766554  6788877664

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.093  Score=41.06  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=27.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      |||++.|. +..|..+.+.+.+ .+++|++++.
T Consensus         1 MkI~~~G~-~~~~~~~l~~L~~-~~~~i~~V~t   31 (203)
T d2bw0a2           1 MKIAVIGQ-SLFGQEVYCHLRK-EGHEVVGVFT   31 (203)
T ss_dssp             CEEEEECC-HHHHHHHHHHHHH-TTCEEEEEEE
T ss_pred             CEEEEEcC-CHHHHHHHHHHHH-CCCcEEEEEc
Confidence            79999994 9999999998876 4899999986

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=90.49  E-value=0.028  Score=43.33  Aligned_cols=93  Identities=16%  Similarity=0.160  Sum_probs=56.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHH--HHHhccccCCCccEEEEcc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLT--MVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~--~~l~~~~~~~~~DVVIDfT  114 (220)
                      .|.|.|++|.+|...+..+.. -+.++++.+.++.. .+.-.-+|.   ..+.-+++.+  +.+.    ....|.+||+.
T Consensus        34 ~vlV~gasGGVG~~aiQlAk~-~Ga~Via~~~~~~k-~~~~~~lGa---d~vi~~~~~~~~~~l~----~~~~~~vvD~V  104 (177)
T d1o89a2          34 EIVVTGASGGVGSTAVALLHK-LGYQVVAVSGREST-HEYLKSLGA---SRVLPRDEFAESRPLE----KQVWAGAIDTV  104 (177)
T ss_dssp             EEEESSTTSHHHHHHHHHHHH-TTCCEEEEESCGGG-HHHHHHHTE---EEEEEGGGSSSCCSSC----CCCEEEEEESS
T ss_pred             cEEEEEccccchHHHHHHHHH-cCCCeEEEecchhH-HHHHHhhcc---ccccccccHHHHHHHH----hhcCCeeEEEc
Confidence            699999999999999987766 59999987765321 111111121   1111222221  1222    13579999987


Q ss_pred             CchhHHHHHHHHHHCCCcEEEeCC
Q 027650          115 DASTVYDNVKQATAFGMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~~~al~~G~~vVigTt  138 (220)
                      --+...+.+......|.=+.+|..
T Consensus       105 gg~~~~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2         105 GDKVLAKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             CHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             chHHHHHHHHHhccccceEeeccc
Confidence            655555555555566766777765

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.55  Score=37.03  Aligned_cols=32  Identities=34%  Similarity=0.554  Sum_probs=26.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .++.|.|+++++|+.+++.+.+ .+.+|+. +++
T Consensus         8 K~~lITGas~GIG~aia~~la~-~G~~V~~-~~r   39 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHA-TGARVVA-VSR   39 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EEC
Confidence            4789999999999999999887 5888765 454

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.43  E-value=1.3  Score=36.12  Aligned_cols=89  Identities=24%  Similarity=0.230  Sum_probs=51.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccCc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTDA  116 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~p  116 (220)
                      .+.|.|+++++|+.+++.+.+ .+..|+ +.|........+           .-...++++..++. .....+..|.+.+
T Consensus         9 valITGas~GIG~aiA~~la~-~Ga~Vv-i~d~~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~d~~~~   74 (302)
T d1gz6a_           9 VVLVTGAGGGLGRAYALAFAE-RGALVV-VNDLGGDFKGVG-----------KGSSAADKVVEEIR-RRGGKAVANYDSV   74 (302)
T ss_dssp             EEEETTTTSHHHHHHHHHHHH-TTCEEE-EECCCBCTTSCB-----------CCSHHHHHHHHHHH-HTTCEEEEECCCG
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-cCCEEE-EEeCCchhhhhh-----------hhHHHHHHHHHHHh-hcccccccccchH
Confidence            577889999999999999876 588765 455421000000           00111222221110 0245677888888


Q ss_pred             hhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          117 STVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       117 ~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      +...+.+..+.+.  ++.++|-.-|
T Consensus        75 ~~~~~~v~~~~~~~G~iDiLVnNAG   99 (302)
T d1gz6a_          75 EAGEKLVKTALDTFGRIDVVVNNAG   99 (302)
T ss_dssp             GGHHHHHHHHHHHTSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCc
Confidence            8877777766664  5788875443

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.31  E-value=0.55  Score=35.28  Aligned_cols=74  Identities=16%  Similarity=0.082  Sum_probs=41.9

Q ss_pred             CceEEEEcCCC--HHHHHHHHHHHhcCCcE--EEEEEecCCC---Ccchhh-----hhcCCCCCCccccCCHHHHHhccc
Q 027650           35 NIKVIINGAVK--EIGRAAVIAVTKARGME--VAGAIDSHSV---GEDIGM-----VCDMEQPLEIPVMSDLTMVLGSIS  102 (220)
Q Consensus        35 ~ikV~V~Ga~G--rMG~~i~~~i~~~~~~e--Lvg~vd~~~~---g~d~g~-----l~g~~~~~gv~v~~dl~~~l~~~~  102 (220)
                      ++||+|+|| |  +.+..++..+...+.+.  =+..+|.+..   ++-...     ..+.+.+..+..++|..+.+.   
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~---   76 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALD---   76 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHT---
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcC---
Confidence            589999998 7  45566777777666542  2346675321   111111     111111223345788888885   


Q ss_pred             cCCCccEEEEccC
Q 027650          103 QSKARAVVIDFTD  115 (220)
Q Consensus       103 ~~~~~DVVIDfT~  115 (220)
                         ++|+||....
T Consensus        77 ---gaDvVv~ta~   86 (169)
T d1s6ya1          77 ---GADFVTTQFR   86 (169)
T ss_dssp             ---TCSEEEECCC
T ss_pred             ---CCCEEEEccc
Confidence               7999885443

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=90.23  E-value=0.17  Score=42.84  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=58.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCC-cc-hhhhhcCCCCCCc--cccCCHHHHHhccccCCCccEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVG-ED-IGMVCDMEQPLEI--PVMSDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g-~d-~g~l~g~~~~~gv--~v~~dl~~~l~~~~~~~~~DVVID  112 (220)
                      +++|+|+ |..++.+++++....+++=+-+++++... .. +.++.   +..|+  .+.+++++++.      .+|+|+-
T Consensus       130 ~l~iiG~-G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~---~~~g~~v~~~~s~~eav~------~ADIi~t  199 (340)
T d1x7da_         130 KMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK---EYSGLTIRRASSVAEAVK------GVDIITT  199 (340)
T ss_dssp             EEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT---TCTTCEEEECSSHHHHHT------TCSEEEE
T ss_pred             eEEEEcc-cHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhh---hccCCCceecCCHHHHHh------cCCceee
Confidence            7999996 99999999999877778888888874211 11 11222   12344  45889999996      7999886


Q ss_pred             ccCchhHHHHH-HHHHHCCCcEE-Ee
Q 027650          113 FTDASTVYDNV-KQATAFGMRSV-VY  136 (220)
Q Consensus       113 fT~p~~~~~~~-~~al~~G~~vV-ig  136 (220)
                      +|......+.+ ...++.|.++. ||
T Consensus       200 ~Tas~s~~Pv~~~~~l~pG~hI~aiG  225 (340)
T d1x7da_         200 VTADKAYATIITPDMLEPGMHLNAVG  225 (340)
T ss_dssp             CCCCSSEEEEECGGGCCTTCEEEECS
T ss_pred             ccccCCCCcccchhhcCCCCEEeecc
Confidence            66322111111 23457788875 44

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=1  Score=35.69  Aligned_cols=83  Identities=18%  Similarity=0.126  Sum_probs=48.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      ..+.|.|+++++|+.+++.+.+ .+..|+. ++++.  +.+.++.              +++-..   ..++- +..|.|
T Consensus        12 K~alITGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~~~~~~--------------~~l~~~---g~~~~~~~~Dvs   70 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFAT-AGASVVV-SDINA--DAANHVV--------------DEIQQL---GGQAFACRCDIT   70 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHT-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHc---CCcEEEEEccCC
Confidence            3688999999999999998876 5888765 45421  1111111              111110   00111 344667


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .++...+.+..+.+.  ++.++|-..|
T Consensus        71 ~~~~~~~~~~~~~~~~g~iDilvnnAG   97 (255)
T d1fmca_          71 SEQELSALADFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEeeeCCc
Confidence            777776666666554  5777766554

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.99  E-value=0.15  Score=42.53  Aligned_cols=88  Identities=10%  Similarity=-0.023  Sum_probs=55.0

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      -+++|+|+ |.+++.+++++.....++=+-++++..  .....+...-...++.+..+.+++..      ++|+||=+|+
T Consensus       126 ~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~--e~~~~~~~~~~~~~~~~~~~~~~a~~------~aDiV~taT~  196 (320)
T d1omoa_         126 SVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVRE--KAAKKFVSYCEDRGISASVQPAEEAS------RCDVLVTTTP  196 (320)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSH--HHHHHHHHHHHHTTCCEEECCHHHHT------SSSEEEECCC
T ss_pred             cEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCH--HHHHHHHHHHHhcCCccccchhhhhc------cccEEEEecc
Confidence            47999996 999999999998766687778888642  12222211101234555566677764      7999985543


Q ss_pred             c-hhHHHHHHHHHHCCCcEE
Q 027650          116 A-STVYDNVKQATAFGMRSV  134 (220)
Q Consensus       116 p-~~~~~~~~~al~~G~~vV  134 (220)
                      . +.+.+  ...++.|.++.
T Consensus       197 s~~P~~~--~~~l~~G~hv~  214 (320)
T d1omoa_         197 SRKPVVK--AEWVEEGTHIN  214 (320)
T ss_dssp             CSSCCBC--GGGCCTTCEEE
T ss_pred             Ccccccc--hhhcCCCCeEe
Confidence            1 11111  23467888876

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.87  E-value=0.45  Score=37.79  Aligned_cols=79  Identities=22%  Similarity=0.255  Sum_probs=47.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEccC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFTD  115 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT~  115 (220)
                      .+.|.|+++++|+.+++.+.+ .+.+|+. ++++.  +++.++.              ++ +.     .... +..|.+.
T Consensus         8 ~alITGas~GIG~aia~~la~-~G~~V~~-~~r~~--~~~~~~~--------------~~-~~-----~~~~~~~~Dv~~   63 (244)
T d1nffa_           8 VALVSGGARGMGASHVRAMVA-EGAKVVF-GDILD--EEGKAMA--------------AE-LA-----DAARYVHLDVTQ   63 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HH-TG-----GGEEEEECCTTC
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HH-hh-----CcceEEEeecCC
Confidence            577889999999999999886 4888764 55431  1111111              00 10     0111 3356777


Q ss_pred             chhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          116 ASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       116 p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      ++...+.+..+.+.  ++.++|-..|
T Consensus        64 ~~~v~~~~~~~~~~~g~idilinnAG   89 (244)
T d1nffa_          64 PAQWKAAVDTAVTAFGGLHVLVNNAG   89 (244)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEECCc
Confidence            77776666666553  5677765543

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.85  E-value=0.86  Score=40.41  Aligned_cols=103  Identities=13%  Similarity=0.065  Sum_probs=59.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCC------------CCcchhh---------hhcCCCCCCcc-ccCC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHS------------VGEDIGM---------VCDMEQPLEIP-VMSD   93 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~------------~g~d~g~---------l~g~~~~~gv~-v~~d   93 (220)
                      .||.|+|+ |..|.++++.+.. +|+.=+-++|.+.            ...++|.         +..+.....+. +..+
T Consensus        26 s~VlvvG~-gglG~Ei~knLvl-~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~  103 (529)
T d1yova1          26 AHVCLINA-TATGTEILKNLVL-PGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEES  103 (529)
T ss_dssp             CEEEECCC-SHHHHHHHHHHHT-TTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSC
T ss_pred             CCEEEECC-CHHHHHHHHHHHH-hcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence            48999997 9999999999875 6876666777421            0111111         22121011111 2345


Q ss_pred             HHHHHhcc-ccCCCccEEEEccCchhH-HHHHHHHHHCCCcEEEeCC-CC
Q 027650           94 LTMVLGSI-SQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HI  140 (220)
Q Consensus        94 l~~~l~~~-~~~~~~DVVIDfT~p~~~-~~~~~~al~~G~~vVigTt-G~  140 (220)
                      +++.++.. .-...+|+||+...+... ...-..|.++++|+|.+-+ |+
T Consensus       104 ~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~  153 (529)
T d1yova1         104 PENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGL  153 (529)
T ss_dssp             HHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             chhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence            55443210 000257999987655544 4566788889999986543 53

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=89.84  E-value=0.08  Score=39.94  Aligned_cols=121  Identities=12%  Similarity=0.116  Sum_probs=62.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEccC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFTD  115 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~  115 (220)
                      .||.|+|+ |++++.++-.+.+. +++-+-++.++.  +.+..+..   ..+.....++   ..     .++|+||.+|+
T Consensus        18 ~~vlIlGa-GGaarai~~aL~~~-g~~~I~I~nR~~--~ka~~L~~---~~~~~~~~~~---~~-----~~~DliINaTp   82 (167)
T d1npya1          18 AKVIVHGS-GGMAKAVVAAFKNS-GFEKLKIYARNV--KTGQYLAA---LYGYAYINSL---EN-----QQADILVNVTS   82 (167)
T ss_dssp             SCEEEECS-STTHHHHHHHHHHT-TCCCEEEECSCH--HHHHHHHH---HHTCEEESCC---TT-----CCCSEEEECSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHHC-CCCEEEEecccH--HHHHHHHH---hhhhhhhhcc---cc-----cchhhheeccc
Confidence            58999997 99999999888764 654445666532  12222221   1121212111   11     37899998776


Q ss_pred             ch----hH---HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHh
Q 027650          116 AS----TV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA  179 (220)
Q Consensus       116 p~----~~---~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~  179 (220)
                      ..    .-   ...-...+..+. +|+-- -+++.+ ..|.+.|++.|.+++-    .+++ |+.|++.+.
T Consensus        83 iGm~~~~~~~~l~~~~~~~~~~~-~v~D~-vY~P~~-T~ll~~A~~~G~~~i~----Gl~M-li~Qa~~~f  145 (167)
T d1npya1          83 IGMKGGKEEMDLAFPKAFIDNAS-VAFDV-VAMPVE-TPFIRYAQARGKQTIS----GAAV-IVLQAVEQF  145 (167)
T ss_dssp             TTCTTSTTTTSCSSCHHHHHHCS-EEEEC-CCSSSS-CHHHHHHHHTTCEEEC----HHHH-HHHHHHHHH
T ss_pred             cCCccccccccccccHhhcCCcc-eEEEE-eeccCC-CHHHHHHHHCCCeEEE----CHHH-HHHHHHHHH
Confidence            21    10   011122233343 33221 233322 2366777888887643    5555 455555443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=89.84  E-value=0.48  Score=37.65  Aligned_cols=29  Identities=17%  Similarity=0.377  Sum_probs=23.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      .+.|.|++++||+.+++.+.+ .+..|+..
T Consensus         6 ~alITGas~GIG~aiA~~la~-~Ga~V~~~   34 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALAA-QGADIVLN   34 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            467889999999999999886 58887643

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=89.84  E-value=1.1  Score=35.34  Aligned_cols=30  Identities=30%  Similarity=0.520  Sum_probs=24.5

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcEEEEEEe
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGMEVAGAID   68 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd   68 (220)
                      |.|.|+++++|+.+++.+.+ .+..++-...
T Consensus         4 ~lITGas~GIG~a~a~~la~-~Ga~V~i~~~   33 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGK-AGCKVLVNYA   33 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHH-TTCEEEEEES
T ss_pred             EEEeCCCcHHHHHHHHHHHH-CCCEEEEEeC
Confidence            57789999999999999886 5888875443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=89.83  E-value=0.11  Score=39.87  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=25.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      -||+|+|+ |.||+.++..++.. |++++ ++|+
T Consensus         5 ~~vaViGa-G~mG~~iA~~~a~~-G~~V~-l~D~   35 (186)
T d1wdka3           5 KQAAVLGA-GIMGGGIAYQSASK-GTPIL-MKDI   35 (186)
T ss_dssp             SSEEEECC-HHHHHHHHHHHHHT-TCCEE-EECS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhC-CCeEE-EEEC
Confidence            37999997 99999999777664 88876 6775

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=89.77  E-value=1.9  Score=30.83  Aligned_cols=60  Identities=8%  Similarity=0.076  Sum_probs=41.3

Q ss_pred             CccEEEEccCchhHHHHHHHHHHCCCcEEEeC-CCCCHHHHHHHHHHhhhcCceEEEcCCCcHHH
Q 027650          106 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPTLSIGS  169 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~~~~~~al~~G~~vVigT-tG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv  169 (220)
                      ++|+|+-+.......+.+..+.+.|+.+|.-. +|++-=+    .++|+++|+++.-.|++|+.-
T Consensus        45 ~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d~ID----~~aa~~~gI~V~N~P~~svae  105 (134)
T d1j4aa2          45 GADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNID----MAKAKELGFQITNVPVYSYTT  105 (134)
T ss_dssp             TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBC----HHHHHHTTCEEECCCCSCCBH
T ss_pred             CCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcCccC----HHHHHhCCeEEEECCCCcHHH
Confidence            79988754444445666676677788887533 3776433    456677899999999988643

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.74  E-value=0.18  Score=38.58  Aligned_cols=103  Identities=9%  Similarity=0.089  Sum_probs=59.7

Q ss_pred             CCCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEE
Q 027650           32 PQSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVI  111 (220)
Q Consensus        32 ~~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVI  111 (220)
                      .-.-.+|+|+|. |++|+.+++.+... +++++ ++|.+.. +.+....     .|.. ..++++++.      ..|++|
T Consensus        21 ~l~Gk~v~V~Gy-G~iG~g~A~~~rg~-G~~V~-v~e~dp~-~al~A~~-----dG~~-v~~~~~a~~------~adivv   84 (163)
T d1li4a1          21 MIAGKVAVVAGY-GDVGKGCAQALRGF-GARVI-ITEIDPI-NALQAAM-----EGYE-VTTMDEACQ------EGNIFV   84 (163)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHT-TCEEE-EECSCHH-HHHHHHH-----TTCE-ECCHHHHTT------TCSEEE
T ss_pred             eecCCEEEEecc-ccccHHHHHHHHhC-CCeeE-eeecccc-hhHHhhc-----CceE-eeehhhhhh------hccEEE
Confidence            333458999996 99999999998875 77765 4665321 1111111     1222 347888875      789888


Q ss_pred             EccC-chhH-HHHHHHHHHCCCcEEEeCCC-CC-HHHHHHHHHHhh
Q 027650          112 DFTD-ASTV-YDNVKQATAFGMRSVVYVPH-IQ-LETVSALSAFCD  153 (220)
Q Consensus       112 DfT~-p~~~-~~~~~~al~~G~~vVigTtG-~~-~e~~~~L~~aA~  153 (220)
                      -.|- ++.. .+++.   +..-.+|++..| |+ +-+.+.|++.+.
T Consensus        85 taTGn~~vI~~eh~~---~MKdgaIL~N~Ghfd~EId~~~L~~~~~  127 (163)
T d1li4a1          85 TTTGCIDIILGRHFE---QMKDDAIVCNIGHFDVEIDVKWLNENAV  127 (163)
T ss_dssp             ECSSCSCSBCHHHHT---TCCTTEEEEECSSSTTSBCHHHHHHHCS
T ss_pred             ecCCCccchhHHHHH---hccCCeEEEEeccccceecHHHHhhccc
Confidence            5553 2333 34443   344445555554 54 345566766553

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.48  Score=37.70  Aligned_cols=32  Identities=28%  Similarity=0.364  Sum_probs=26.3

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ..+.|.|++++||+.+++.+.+ .+.+|+. +|+
T Consensus         7 K~alITGas~GIG~aia~~la~-~Ga~V~i-~~r   38 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVN-SGARVVI-CDK   38 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EEC
Confidence            3689999999999999999887 4888765 454

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=89.49  E-value=0.49  Score=37.28  Aligned_cols=29  Identities=28%  Similarity=0.544  Sum_probs=25.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      ++.|.|+++++|+.+++.+.+ .+++++..
T Consensus         7 ~alItGas~GIG~aia~~l~~-~G~~V~~~   35 (241)
T d2a4ka1           7 TILVTGAASGIGRAALDLFAR-EGASLVAV   35 (241)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            678889999999999999886 58888754

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.48  E-value=0.58  Score=37.21  Aligned_cols=78  Identities=19%  Similarity=0.241  Sum_probs=47.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc---EEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (220)
                      .+.|.|+++++|+.+++.+.+ .+..|+ +++++.  +.+.++.               +.+..    ...+   +..|.
T Consensus         7 ~alITGas~GIG~aia~~la~-~Ga~V~-~~~r~~--~~l~~~~---------------~~~~~----~g~~~~~~~~Dv   63 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLAE-EGTAIA-LLDMNR--EALEKAE---------------ASVRE----KGVEARSYVCDV   63 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEE-EEESCH--HHHHHHH---------------HHHHT----TTSCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEECCH--HHHHHHH---------------HHHHh----cCCcEEEEEccC
Confidence            678899999999999999876 488865 455531  1111111               11111    1222   34577


Q ss_pred             cCchhHHHHHHHHHHC--CCcEEEeC
Q 027650          114 TDASTVYDNVKQATAF--GMRSVVYV  137 (220)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigT  137 (220)
                      +.++.+.+.+..+.+.  ++.++|-.
T Consensus        64 ~~~~~v~~~~~~~~~~~g~iDilVnn   89 (260)
T d1zema1          64 TSEEAVIGTVDSVVRDFGKIDFLFNN   89 (260)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCeehhh
Confidence            7787777777666554  57777633

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.48  E-value=0.25  Score=33.15  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=26.1

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      |.+|+|+|+ |..|++++.+.... ++++. ++|++
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~L-G~~v~-vldp~   33 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPL-GIAVW-PVGLD   33 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGG-TEEEE-EECTT
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHc-CCEEE-EEcCC
Confidence            568999996 99999999877654 88876 45553

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=89.38  E-value=1.5  Score=34.69  Aligned_cols=31  Identities=26%  Similarity=0.536  Sum_probs=25.5

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+.|.|+++++|+.+++.+.+ .+..|+ ++++
T Consensus         6 ~alITGas~GIG~aia~~la~-~Ga~V~-i~~r   36 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAA-EGAKLS-LVDV   36 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEE-EEES
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEEC
Confidence            578889999999999999887 488865 4554

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.37  E-value=2.1  Score=34.56  Aligned_cols=86  Identities=19%  Similarity=0.204  Sum_probs=49.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc---EEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (220)
                      ..+.|.|+++++|+.+++.+.+ .+..|+. ++++.  +.+.+..           .++.+.+..   .....   +..|
T Consensus        13 KvalITGas~GIG~aia~~la~-~Ga~Vvi-~~r~~--~~l~~~~-----------~el~~~~~~---~~~~~~~~~~~D   74 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLE-LGSNVVI-ASRKL--ERLKSAA-----------DELQANLPP---TKQARVIPIQCN   74 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH-----------HHHHHTSCT---TCCCCEEEEECC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH-----------HHHHhhhcc---ccCceEEEEecc
Confidence            3688999999999999999887 4888774 45421  1111111           011111100   01222   2346


Q ss_pred             ccCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          113 FTDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .|.++...+.+..+.+.  ++.++|-..|
T Consensus        75 vs~~~~v~~~~~~~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          75 IRNEEEVNNLVKSTLDTFGKINFLVNNGG  103 (297)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHhCCeEEEEeecc
Confidence            77888877777766653  5777775443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.16  E-value=0.64  Score=37.14  Aligned_cols=83  Identities=20%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc---EEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVID  112 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVID  112 (220)
                      ..+.|.|++++||+.+++.+.+ .+.+|+. ++++.  +++.++.               +.+.+.+ .....   +..|
T Consensus         6 K~alVTGas~GIG~aia~~la~-~Ga~V~l-~~r~~--~~l~~~~---------------~~l~~~~-~~~~~~~~~~~D   65 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQ-EGANVTI-TGRSS--ERLEETR---------------QIILKSG-VSEKQVNSVVAD   65 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH---------------HHHHTTT-CCGGGEEEEECC
T ss_pred             CEEEEeCcCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH---------------HHHHhcC-CCCCceEEEEcc
Confidence            4688899999999999999877 4888664 45421  1111111               1111000 00111   3457


Q ss_pred             ccCchhHHHHHHHHHHC--CCcEEEeCC
Q 027650          113 FTDASTVYDNVKQATAF--GMRSVVYVP  138 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTt  138 (220)
                      .|.++...+.+..+.+.  ++.++|-..
T Consensus        66 vs~~~~v~~~~~~~~~~~g~iDilvnnA   93 (272)
T d1xkqa_          66 VTTEDGQDQIINSTLKQFGKIDVLVNNA   93 (272)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCceEEEeCC
Confidence            78888877777766664  677776543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.13  E-value=0.2  Score=39.15  Aligned_cols=31  Identities=35%  Similarity=0.461  Sum_probs=26.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ||.|.|++|++|+.+++.+.+. +.+|+. +|+
T Consensus         4 kVlITGas~GIG~aia~~l~~~-G~~V~~-~~~   34 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKN-GYTVLN-IDL   34 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TEEEEE-EES
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEE-EEC
Confidence            7999999999999999999874 888765 565

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=89.11  E-value=0.49  Score=34.32  Aligned_cols=115  Identities=11%  Similarity=0.137  Sum_probs=60.8

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC--CcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV--GEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVV  110 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~--g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVV  110 (220)
                      .|.|+|+ |++|+.+++.+.+. +.+++.+ +.+..  -..+.++.    ..++.+ +   ++.+-+ .+.+ -.++|++
T Consensus         5 HiII~G~-g~~g~~l~~~L~~~-~~~v~vI-d~d~~~~~~~~~~~~----~~~~~vi~Gd~~d~~~L-~~a~-i~~a~~v   75 (153)
T d1id1a_           5 HFIVCGH-SILAINTILQLNQR-GQNVTVI-SNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVL-KKAG-IDRCRAI   75 (153)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHT-TCCEEEE-ECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHH-HHHT-TTTCSEE
T ss_pred             EEEEECC-CHHHHHHHHHHHHc-CCCEEEE-eccchhHHHHHHHhh----cCCcEEEEccCcchHHH-HHhc-cccCCEE
Confidence            6999997 99999999998765 6777654 43210  01112221    224433 2   233222 1110 1368888


Q ss_pred             EEccCchhH-HHHHHHHHH--CCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCc
Q 027650          111 IDFTDASTV-YDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS  166 (220)
Q Consensus       111 IDfT~p~~~-~~~~~~al~--~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS  166 (220)
                      |-.|.-+.. ...+..+.+  ..+++|+-.  .+++..+.|+    +.|+-.+++|...
T Consensus        76 i~~~~~d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~----~~Gad~vi~p~~~  128 (153)
T d1id1a_          76 LALSDNDADNAFVVLSAKDMSSDVKTVLAV--SDSKNLNKIK----MVHPDIILSPQLF  128 (153)
T ss_dssp             EECSSCHHHHHHHHHHHHHHTSSSCEEEEC--SSGGGHHHHH----TTCCSEEECHHHH
T ss_pred             EEccccHHHHHHHHHHHHHhCCCCceEEEE--cCHHHHHHHH----HCCCCEEECHHHH
Confidence            855543333 223333333  244566543  4455545553    4678888988543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.92  E-value=0.83  Score=36.22  Aligned_cols=31  Identities=29%  Similarity=0.509  Sum_probs=25.0

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+.|.|+++++|+.+++.+.+ .+.+|+ ++++
T Consensus         7 valVTGas~GIG~aia~~la~-~Ga~V~-~~~r   37 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAR-EGAKVT-ITGR   37 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHH-TTCEEE-EEES
T ss_pred             EEEEeCcCCHHHHHHHHHHHH-CCCEEE-EEEC
Confidence            467789999999999999876 488866 4554

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.69  E-value=0.82  Score=36.09  Aligned_cols=81  Identities=23%  Similarity=0.272  Sum_probs=49.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc---EEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (220)
                      .|.|.|+++++|+++++.+.+ .+.+++...+++.  +...++               .+.+..    ...+   +..|+
T Consensus         8 ~alITGas~GIG~aia~~la~-~G~~Vvi~~~~~~--~~~~~~---------------~~~~~~----~g~~~~~~~~D~   65 (259)
T d1ja9a_           8 VALTTGAGRGIGRGIAIELGR-RGASVVVNYGSSS--KAAEEV---------------VAELKK----LGAQGVAIQADI   65 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHHH-TTCEEEEEESSCH--HHHHHH---------------HHHHHH----TTCCEEEEECCT
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-cCCEEEEEcCCCh--HHHHHH---------------HHHHHH----cCCCceEecCCC
Confidence            688999999999999999887 5888875554421  111111               111111    1223   34577


Q ss_pred             cCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      +.++...+.+..+.+.  ++.++|-..|
T Consensus        66 ~~~~~v~~~~~~~~~~~g~idilinnag   93 (259)
T d1ja9a_          66 SKPSEVVALFDKAVSHFGGLDFVMSNSG   93 (259)
T ss_dssp             TSHHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEeccc
Confidence            7777777666555443  5666765554

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=88.59  E-value=1  Score=35.82  Aligned_cols=161  Identities=8%  Similarity=0.027  Sum_probs=86.9

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKA-----RGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA  108 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~-----~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D  108 (220)
                      .+.||+|+|+ |--|+.++..+...     .++.++-.........+..+-.|.. ..+..+ -+.+|+..      .+|
T Consensus        43 g~KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~-v~~~~v-~~v~EAv~------~AD  113 (226)
T d1qmga2          43 GIKQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFS-EENGTL-GDMWETIS------GSD  113 (226)
T ss_dssp             TCSEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCC-GGGTCE-EEHHHHHH------TCS
T ss_pred             CCCEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCc-cCCCcc-cCHHHHHh------hCC
Confidence            3468999997 99999999998763     4566666665421111122222221 111112 25667765      799


Q ss_pred             EEEEccCchhH---HHHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEE-EcCCCcHHHHHHHHHHHHh--cCC
Q 027650          109 VVIDFTDASTV---YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTLSIGSILLQQAAISA--SFH  182 (220)
Q Consensus       109 VVIDfT~p~~~---~~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vv-iapNfS~Gv~ll~~~a~~~--~~~  182 (220)
                      +|...++-+..   ++.+..-++.|..+.. .-||+-.-...+.--- ..++-++ ++|- ++|-.+=+.+.+.-  ...
T Consensus       114 iVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~F-aHGFnI~~~~~~~~~~-p~dvdVimVAPK-gPGh~VR~~Y~~Gk~~~G~  190 (226)
T d1qmga2         114 LVLLLISDSAQADNYEKVFSHMKPNSILGL-SHGFLLGHLQSLGQDF-PKNISVIAVCPK-GMGPSVRRLYVQGKEVNGA  190 (226)
T ss_dssp             EEEECSCHHHHHHHHHHHHHHSCTTCEEEE-SSSHHHHHHHHHTCCC-CTTSEEEEEEES-SCHHHHHHHHHHHTTTTCC
T ss_pred             EEEEecchHHHHHHHHHHHHhcCCCceeee-cchhhhhhceeeeccc-CCCceEEEECCC-CCCchHHHHHHcccccCCC
Confidence            98855542222   3445567778887775 4588653222110001 1347766 5565 68985545554321  111


Q ss_pred             -CCCeEEEeccCCCCCCCCchhhHHHHHHhhh
Q 027650          183 -YKNVEIVESRPNARMQLKSPTTSPTLVRSTT  213 (220)
Q Consensus       183 -~~diEIiE~HH~~K~DaPSGTA~~~~~~~~~  213 (220)
                       .+..  +=.|    .| +||.|+.++..-++
T Consensus       191 GVP~L--iAV~----QD-~sG~A~~~alayA~  215 (226)
T d1qmga2         191 GINSS--FAVH----QD-VDGRATDVALGWSI  215 (226)
T ss_dssp             CCCEE--EEEE----EC-SSSCHHHHHHHHHH
T ss_pred             CceeE--EEEE----EC-CCCcHHHHHHHHHH
Confidence             1222  2223    35 58999986655443

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=88.58  E-value=1.7  Score=33.92  Aligned_cols=82  Identities=18%  Similarity=0.216  Sum_probs=46.0

Q ss_pred             EEEEcCCCHHHHHHHHHHHhcCCcE------EEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EE
Q 027650           38 VIINGAVKEIGRAAVIAVTKARGME------VAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VV  110 (220)
Q Consensus        38 V~V~Ga~GrMG~~i~~~i~~~~~~e------Lvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VV  110 (220)
                      |.|.|+++++|+.+++.+.+. +..      .+..++++.  .++.++.              +++-..   ..++. +.
T Consensus         4 vlITGas~GIG~aia~~la~~-G~~~~~~~~~v~~~~r~~--~~l~~~~--------------~~~~~~---g~~~~~~~   63 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARA-ARHHPDFEPVLVLSSRTA--ADLEKIS--------------LECRAE---GALTDTIT   63 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHH-TTTCTTCCEEEEEEESCH--HHHHHHH--------------HHHHTT---TCEEEEEE
T ss_pred             EEEccCCCHHHHHHHHHHHHh-CccccccCcEEEEEeCCH--HHHHHHH--------------HHHHhc---CCcEEEEE
Confidence            468899999999999998763 443      344455431  1111111              111110   01122 23


Q ss_pred             EEccCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          111 IDFTDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       111 IDfT~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      .|.|.++...+.+..+.+.  ++.++|-..|
T Consensus        64 ~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg   94 (240)
T d2bd0a1          64 ADISDMADVRRLTTHIVERYGHIDCLVNNAG   94 (240)
T ss_dssp             CCTTSHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCcceeecccc
Confidence            4777888777777666554  5777775544

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.41  E-value=0.43  Score=38.10  Aligned_cols=84  Identities=15%  Similarity=0.099  Sum_probs=49.5

Q ss_pred             ceEE-EEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEc
Q 027650           36 IKVI-INGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDF  113 (220)
Q Consensus        36 ikV~-V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDf  113 (220)
                      +||+ |.|+++++|+.+++.+.+..+..++... ++.  .++.+..              +++-..   ..++. +..|.
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~-r~~--~~~~~~~--------------~~l~~~---~~~~~~~~~Dv   62 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTA-RDV--TRGQAAV--------------QQLQAE---GLSPRFHQLDI   62 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEE-SSH--HHHHHHH--------------HHHHHT---TCCCEEEECCT
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEE-CCH--HHHHHHH--------------HHHHhc---CCcEEEEEEec
Confidence            5885 6799999999999998876677766543 321  1111111              111110   01233 34577


Q ss_pred             cCchhHHHHHHHHHHC--CCcEEEeCCC
Q 027650          114 TDASTVYDNVKQATAF--GMRSVVYVPH  139 (220)
Q Consensus       114 T~p~~~~~~~~~al~~--G~~vVigTtG  139 (220)
                      +.++.+.+.+..+.+.  ++.++|---|
T Consensus        63 s~~~sv~~~~~~~~~~~g~iDiLVnNAG   90 (275)
T d1wmaa1          63 DDLQSIRALRDFLRKEYGGLDVLVNNAG   90 (275)
T ss_dssp             TCHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCcEEEEEcCC
Confidence            8888877777666553  5777775544

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.30  E-value=0.28  Score=36.25  Aligned_cols=33  Identities=24%  Similarity=0.204  Sum_probs=26.3

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      ||+|+|++|++|+.++-.+...+-..=+..+|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            899999779999999988887766543447773

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.20  E-value=0.74  Score=36.39  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=24.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+.|.|+++++|+.+++.+.+ .+..|+. +++
T Consensus        12 valITGas~GIG~a~a~~la~-~Ga~V~~-~~r   42 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAK-SVSHVIC-ISR   42 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTT-TSSEEEE-EES
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-cCCEEEE-EEC
Confidence            356779999999999998875 5888664 554

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.13  E-value=0.34  Score=38.59  Aligned_cols=31  Identities=23%  Similarity=0.329  Sum_probs=25.2

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+.|.|+++++|+.+++.+.+ .+..|+ ++++
T Consensus         8 ~alITGas~GIG~aia~~la~-~Ga~V~-~~~~   38 (253)
T d1hxha_           8 VALVTGGASGVGLEVVKLLLG-EGAKVA-FSDI   38 (253)
T ss_dssp             EEEETTTTSHHHHHHHHHHHH-TTCEEE-EECS
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEE-EEEC
Confidence            577889999999999999886 588865 4554

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=87.97  E-value=0.51  Score=40.52  Aligned_cols=87  Identities=18%  Similarity=0.271  Sum_probs=58.0

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCC--HHHHHhccccCCCcc-EE
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSD--LTMVLGSISQSKARA-VV  110 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~d--l~~~l~~~~~~~~~D-VV  110 (220)
                      ...+|.+.|+ |.-|+..++.+.+ .++++++++|....+.  ++.     -.|+||.+.  +.+....     +.+ +.
T Consensus        37 ~~~~~~l~g~-~~~~~~~~~~~~~-~~~~v~~~~d~~~~~~--~~~-----~~g~pv~s~~~~~~~~~~-----~~~~~~  102 (395)
T d2py6a1          37 NATRLVILGT-KGFGAHLMNVRHE-RPCEVIAAVDDFRYHS--GEL-----YYGLPIISTDRFTELATH-----DRDLVA  102 (395)
T ss_dssp             GGCEEEEECS-SSTHHHHHSCSSS-CSSEEEEEECTTTTTS--CCE-----ETTEEEECHHHHHHHHHT-----CTTEEE
T ss_pred             CCceEEEEcC-chhHHHHHHHHHH-CCceEEEEecCchhhc--Cce-----ecceEeecHHHhhhhhhc-----cCcEEE
Confidence            3458999997 9999999987665 5899999999643111  111     347888642  2233332     445 66


Q ss_pred             EEccCchhHHHHH-HHHHHCCCcEE
Q 027650          111 IDFTDASTVYDNV-KQATAFGMRSV  134 (220)
Q Consensus       111 IDfT~p~~~~~~~-~~al~~G~~vV  134 (220)
                      |+++.+....... ..+.++|++.+
T Consensus       103 v~~~~~~~~~~~~~~~~~~~~~~~~  127 (395)
T d2py6a1         103 LNTCRYDGPKRFFDQICRTHGIPHL  127 (395)
T ss_dssp             EECCCSHHHHHHHHHHHHHTTCCEE
T ss_pred             EEeccccchhhHHHHHHHhcCCccc
Confidence            7777777765544 56678898776

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=87.89  E-value=2.2  Score=33.60  Aligned_cols=83  Identities=14%  Similarity=0.163  Sum_probs=50.9

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      .++.|.|++++||+++++.+.+ .+.+|+. ++++.  .++.++.              +++-..   ..... ..+|++
T Consensus         7 K~alITGas~GIG~aia~~la~-~G~~V~i-~~r~~--~~l~~~~--------------~~~~~~---~~~~~~~~~D~s   65 (258)
T d1ae1a_           7 TTALVTGGSKGIGYAIVEELAG-LGARVYT-CSRNE--KELDECL--------------EIWREK---GLNVEGSVCDLL   65 (258)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHT---TCCEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHhc---CCCceEEEeecC
Confidence            4799999999999999998876 4788765 44421  1111111              111110   01222 246889


Q ss_pred             CchhHHHHHHHHHHC--C-CcEEEeCCC
Q 027650          115 DASTVYDNVKQATAF--G-MRSVVYVPH  139 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G-~~vVigTtG  139 (220)
                      .++...+.+..+.+.  | +.+++-..|
T Consensus        66 ~~~~~~~~~~~~~~~~~g~idilinnag   93 (258)
T d1ae1a_          66 SRTERDKLMQTVAHVFDGKLNILVNNAG   93 (258)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCcEEEecccc
Confidence            999888877776654  3 677775443

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.83  E-value=1.1  Score=35.76  Aligned_cols=85  Identities=25%  Similarity=0.275  Sum_probs=48.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      ..+.|.|+++++|+.+++.+.+ .+..|+. ++++.  ..+.++.              +++...-....++. +..|.+
T Consensus         5 K~alITGas~GIG~aia~~la~-~Ga~V~~-~~r~~--~~l~~~~--------------~~i~~~~~~~~~~~~~~~Dv~   66 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAK-EGAQVTI-TGRNE--DRLEETK--------------QQILKAGVPAEKINAVVADVT   66 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH--------------HHHHHTTCCGGGEEEEECCTT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH--------------HHHHHcCCCCcceEEEEeeCC
Confidence            3689999999999999999887 4888764 45431  1111111              11111000000111 345778


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTt  138 (220)
                      .++...+.+..+.+.  ++.++|-..
T Consensus        67 ~~~~v~~~~~~~~~~~G~iDilVnnA   92 (274)
T d1xhla_          67 EASGQDDIINTTLAKFGKIDILVNNA   92 (274)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CHHHHHHHHHHHHHHcCCceEEEeec
Confidence            888777777666654  567776543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=87.61  E-value=0.32  Score=36.74  Aligned_cols=128  Identities=13%  Similarity=0.060  Sum_probs=66.2

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCC-Ccchhhhhc-CCCCCCc--cc--cCCHH---HHHhccccCC
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSV-GEDIGMVCD-MEQPLEI--PV--MSDLT---MVLGSISQSK  105 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~-g~d~g~l~g-~~~~~gv--~v--~~dl~---~~l~~~~~~~  105 (220)
                      ..+|.|+|+ |.+|+.++..+... +..-+-+++++.. ...+-.+.. .....+.  .+  ..+.+   +.+.      
T Consensus        18 ~k~vlIlGa-GGaarai~~al~~~-g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   89 (182)
T d1vi2a1          18 GKTMVLLGA-GGASTAIGAQGAIE-GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALA------   89 (182)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH------
T ss_pred             CCEEEEECC-cHHHHHHHHHHhhc-CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhc------
Confidence            358999997 99999999888775 6766667776421 111111110 0001111  11  22333   3343      


Q ss_pred             CccEEEEccCchhHH---HHH---HHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHH
Q 027650          106 ARAVVIDFTDASTVY---DNV---KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS  178 (220)
Q Consensus       106 ~~DVVIDfT~p~~~~---~~~---~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~  178 (220)
                      .+|++|.+|+.....   +.+   ...++ ...+|+-- -+++.+ ..|.+.|++.|.+++-    .+++ |+.|++.+
T Consensus        90 ~~diiIN~Tp~G~~~~~~~~~~~~~~~~~-~~~~v~Di-~Y~p~~-T~ll~~a~~~g~~~i~----Gl~M-li~Qa~~~  160 (182)
T d1vi2a1          90 SADILTNGTKVGMKPLENESLVNDISLLH-PGLLVTEC-VYNPHM-TKLLQQAQQAGCKTID----GYGM-LLWQGAEQ  160 (182)
T ss_dssp             TCSEEEECSSTTSTTSCSCCSCCCGGGSC-TTCEEEEC-CCSSSS-CHHHHHHHTTTCEEEC----HHHH-HHHHHHHH
T ss_pred             ccceeccccCCccccccchhhhhHHHhhh-cchhhHHh-hcCccc-cHHHHHHHHCcCeEec----cHHH-HHHHHHHH
Confidence            799999888643220   100   01112 22233322 234333 3466778888887765    5566 45555444

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=87.28  E-value=0.36  Score=36.89  Aligned_cols=58  Identities=28%  Similarity=0.540  Sum_probs=39.2

Q ss_pred             ccceeeeecccccccccCCccccccCCCC------------CCCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650            4 LGCQFHCRMHHISQNVKAKRFISCSTNPP------------QSNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .||..-| |    .++-..+..+|+-||.            ....||+|+|+ |-.|-..+..+.. .+++++ +++.
T Consensus         5 i~C~~~C-~----~~~~~~~~~~C~~Np~~g~e~~~~~~~~~~~k~V~IIGa-GPAGL~AA~~la~-~G~~Vt-l~E~   74 (179)
T d1ps9a3           5 IGCNQAC-L----DQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGA-GPAGLAFAINAAA-RGHQVT-LFDA   74 (179)
T ss_dssp             CCCCTTT-H----HHHHTTCCCCCSSCTTTTCTTTSCCCSCSSCCEEEEECC-SHHHHHHHHHHHT-TTCEEE-EEES
T ss_pred             cccHHHH-h----hHhhcCCeeEEeeCccccCccccccCCCCCCcEEEEECc-cHHHHHHHHHHHh-hccceE-EEec
Confidence            4676666 1    1222335556876654            34579999997 9999999888765 578776 5675

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=86.97  E-value=1.4  Score=35.21  Aligned_cols=72  Identities=13%  Similarity=0.033  Sum_probs=47.5

Q ss_pred             CCCccccCCHHHHHhccccCCCccEEEEccC-chhHHHHHHHHHHCCC--cEEEeCCCCCHHHHHHHHHHhhhcCceEEE
Q 027650           85 PLEIPVMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFCDKASMGCLI  161 (220)
Q Consensus        85 ~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT~-p~~~~~~~~~al~~G~--~vVigTtG~~~e~~~~L~~aA~~~~v~vvi  161 (220)
                      ..|+.+++|..++..      ++|+||-+.+ ++...+.+...+++-.  .+|+-++..+.....++.+..++.++.++=
T Consensus       126 e~Gv~v~~d~~Eav~------~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~  199 (242)
T d2b0ja2         126 DVGLKVTSDDREAVE------GADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITS  199 (242)
T ss_dssp             GGTCEEESCHHHHHT------TCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             HCCCEEECCHHHHHh------cCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEEC
Confidence            356778889989886      7999886553 3444555554443322  255556666777778888888877888763


Q ss_pred             c
Q 027650          162 A  162 (220)
Q Consensus       162 a  162 (220)
                      .
T Consensus       200 ~  200 (242)
T d2b0ja2         200 Y  200 (242)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.82  E-value=0.69  Score=36.10  Aligned_cols=69  Identities=19%  Similarity=0.232  Sum_probs=42.5

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF  113 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf  113 (220)
                      .++.|.|++++||+.+++.+.+ .+.+|+. ++++.  +.+.+. +.. ..-+.+.++.++++++.   .+.|++|..
T Consensus         5 K~~lVTGas~GIG~aia~~l~~-~Ga~V~~-~~r~~--~~l~~~-~~~-~~~~Dv~~~~~~~~~~~---g~iD~lVnn   73 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQ-EGAEVTI-CARNE--ELLKRS-GHR-YVVCDLRKDLDLLFEKV---KEVDILVLN   73 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHT-CSE-EEECCTTTCHHHHHHHS---CCCSEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHhc-CCc-EEEcchHHHHHHHHHHh---CCCcEEEec
Confidence            4789999999999999999887 4888765 45421  111111 100 00112345667776643   478998864

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.76  E-value=0.22  Score=39.50  Aligned_cols=30  Identities=30%  Similarity=0.501  Sum_probs=25.7

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      ++.|.|+++++|+.+++.+.+. +.+|+.+.
T Consensus         8 ~alITGas~GIG~aia~~la~~-G~~Vi~~~   37 (245)
T d2ag5a1           8 VIILTAAAQGIGQAAALAFARE-GAKVIATD   37 (245)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-CCEEEEEe
Confidence            5788899999999999999875 88988754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=85.97  E-value=1.4  Score=34.71  Aligned_cols=34  Identities=21%  Similarity=0.183  Sum_probs=28.6

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ..|.|.|+++++|+.+++.+.+. +..++.+.++.
T Consensus         6 K~vlITGgs~GIG~~~A~~la~~-G~~vii~~r~~   39 (254)
T d1sbya1           6 KNVIFVAALGGIGLDTSRELVKR-NLKNFVILDRV   39 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-CCSEEEEEESS
T ss_pred             CEEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCc
Confidence            46899999999999999999874 88888777653

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.78  E-value=0.48  Score=36.79  Aligned_cols=29  Identities=24%  Similarity=0.474  Sum_probs=24.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      -|.|.|+++++|+.+++.+.+ .+.+++..
T Consensus         3 VvlITGas~GIG~aiA~~la~-~Ga~V~~~   31 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEA-AGHQIVGI   31 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEEE
Confidence            357889999999999999986 48997754

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.24  E-value=0.6  Score=34.60  Aligned_cols=33  Identities=18%  Similarity=0.278  Sum_probs=26.0

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      +.||+|+|+ |++|+.++-.+...+=.||+ .+|.
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~-L~Di   35 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDI   35 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEE-EEec
Confidence            359999997 99999998777765545755 8885

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=1.8  Score=33.87  Aligned_cols=31  Identities=35%  Similarity=0.473  Sum_probs=25.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+.|.|+++++|+.+++.+.+ .+..|+. +++
T Consensus         5 valITGas~GIG~aia~~la~-~Ga~V~i-~~r   35 (254)
T d2gdza1           5 VALVTGAAQGIGRAFAEALLL-KGAKVAL-VDW   35 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-TTCEEEE-EES
T ss_pred             EEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EEC
Confidence            577889999999999999876 5888665 444

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.94  E-value=1  Score=34.69  Aligned_cols=148  Identities=13%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             CceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEcc
Q 027650           35 NIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDFT  114 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDfT  114 (220)
                      ..+|+|+|. |--|+.++.++.. .++.++-...+.  +... +.+   ...|..+ -+++|+..      .+|+|.-.+
T Consensus        16 ~k~IaViGY-GsQG~AhAlNLrD-SG~~V~VGLr~g--s~s~-~~A---~~~Gf~v-~~~~eA~~------~aDiim~L~   80 (182)
T d1np3a2          16 GKKVAIIGY-GSQGHAHACNLKD-SGVDVTVGLRSG--SATV-AKA---EAHGLKV-ADVKTAVA------AADVVMILT   80 (182)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHH-TTCCEEEECCTT--CHHH-HHH---HHTTCEE-ECHHHHHH------TCSEEEECS
T ss_pred             CCEEEEEee-CcHhHHHHhhhhh-cCCCEEEEcCCC--CccH-HHH---hhhcccc-ccHHHHhh------hcCeeeeec
Confidence            358999997 9999999999876 588887666542  1111 111   1224343 36777775      799888444


Q ss_pred             CchhH-H----HHHHHHHHCCCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHHHHHHHHHHHHhcCCCCCeEEE
Q 027650          115 DASTV-Y----DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV  189 (220)
Q Consensus       115 ~p~~~-~----~~~~~al~~G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~Gv~ll~~~a~~~~~~~~diEIi  189 (220)
                       |+.. .    +.+...++.|..+.. .-||+--- ..|   --..++-+++-.-=+.|-.+=..+.+  .+-.+..  +
T Consensus        81 -PD~~q~~vy~~~I~p~lk~g~~L~F-aHGfnIh~-~~I---~pp~~vdV~mvAPKgpG~~VR~~y~~--G~Gvp~l--~  150 (182)
T d1np3a2          81 -PDEFQGRLYKEEIEPNLKKGATLAF-AHGFSIHY-NQV---VPRADLDVIMIAPKAPGHTVRSEFVK--GGGIPDL--I  150 (182)
T ss_dssp             -CHHHHHHHHHHHTGGGCCTTCEEEE-SCCHHHHT-TSS---CCCTTCEEEEEEESSCSHHHHHHHHT--TCCCCEE--E
T ss_pred             -chHHHHHHHHHhhhhhcCCCcEEEE-eccceEEe-eee---ecCCCCceEeeccccccchhHHHhhc--CCccceE--E
Confidence             4433 2    344455677777765 44664311 111   11234555533333666633333331  1112222  2


Q ss_pred             eccCCCCCCCCchhhHHHHHHhh
Q 027650          190 ESRPNARMQLKSPTTSPTLVRST  212 (220)
Q Consensus       190 E~HH~~K~DaPSGTA~~~~~~~~  212 (220)
                      =.|    .| +||.|+.+...-+
T Consensus       151 AV~----qD-~sg~A~~~alayA  168 (182)
T d1np3a2         151 AIY----QD-ASGNAKNVALSYA  168 (182)
T ss_dssp             EEE----EC-SSSCHHHHHHHHH
T ss_pred             EEE----eC-CCccHHHHHHHHH
Confidence            222    25 5888887655433

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=84.92  E-value=0.62  Score=37.35  Aligned_cols=79  Identities=20%  Similarity=0.235  Sum_probs=47.4

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEEcc
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVIDFT  114 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVIDfT  114 (220)
                      ..+.|.|+++++|+.+++.+.+ .+.+|+. ++++.  +.+.++.               +-+.     .++. +..|.+
T Consensus         6 K~alITGas~GIG~aia~~la~-~Ga~V~i-~~r~~--~~l~~~~---------------~~~~-----~~~~~~~~Dv~   61 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVA-EGAKVAV-LDKSA--ERLAELE---------------TDHG-----DNVLGIVGDVR   61 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEE-EESCH--HHHHHHH---------------HHHG-----GGEEEEECCTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-CCCEEEE-EECCH--HHHHHHH---------------HHcC-----CCeeEEecccc
Confidence            3688999999999999999887 4888775 45431  1111111               1111     0122 344667


Q ss_pred             CchhHHHHHHHHHHC--CCcEEEeCC
Q 027650          115 DASTVYDNVKQATAF--GMRSVVYVP  138 (220)
Q Consensus       115 ~p~~~~~~~~~al~~--G~~vVigTt  138 (220)
                      .++...+.+..+.+.  ++.+++-.-
T Consensus        62 ~~~~~~~~~~~~~~~~g~idilvnnA   87 (276)
T d1bdba_          62 SLEDQKQAASRCVARFGKIDTLIPNA   87 (276)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred             cHHHHHHHHHHHHHHhCCcccccccc
Confidence            777776666666554  567766443

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.91  E-value=0.59  Score=34.80  Aligned_cols=71  Identities=7%  Similarity=0.027  Sum_probs=38.7

Q ss_pred             ceEEEEcCCCHHHHHHH--HHHHhcCC--cEEEEEEecCCCCcchh---hhhc--CCCCCCccccCCHHHHHhccccCCC
Q 027650           36 IKVIINGAVKEIGRAAV--IAVTKARG--MEVAGAIDSHSVGEDIG---MVCD--MEQPLEIPVMSDLTMVLGSISQSKA  106 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~--~~i~~~~~--~eLvg~vd~~~~g~d~g---~l~g--~~~~~gv~v~~dl~~~l~~~~~~~~  106 (220)
                      |||+|+|+ |..|...+  ..+....+  ..=+..+|.+.  ..++   ++..  ......+.++++.++.+.      +
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~--~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~------~   71 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDE--EKQKIVVDFVKRLVKDRFKVLISDTFEGAVV------D   71 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCH--HHHHHHHHHHHHHHTTSSEEEECSSHHHHHT------T
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCc--HHHHHHHHHHHhhhccCceEEEecCcccccC------C
Confidence            79999998 86664433  22333332  23344678532  1111   1100  012344566788888886      8


Q ss_pred             ccEEEEccC
Q 027650          107 RAVVIDFTD  115 (220)
Q Consensus       107 ~DVVIDfT~  115 (220)
                      +|+||....
T Consensus        72 aDvVVita~   80 (162)
T d1up7a1          72 AKYVIFQFR   80 (162)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEecc
Confidence            998885443

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=84.70  E-value=1.9  Score=30.01  Aligned_cols=113  Identities=15%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccc-c---CCHHHHHhccccCCCccEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPV-M---SDLTMVLGSISQSKARAVVID  112 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v-~---~dl~~~l~~~~~~~~~DVVID  112 (220)
                      .|.|+|+ |++|+.+++.+...   +++ +++.+.  .....+.    ..|+.+ +   ++.+ .+.+.+ -.+++.+|-
T Consensus         2 HivI~G~-g~~g~~l~~~L~~~---~i~-vi~~d~--~~~~~~~----~~~~~~i~Gd~~~~~-~L~~a~-i~~A~~vi~   68 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELRGS---EVF-VLAEDE--NVRKKVL----RSGANFVHGDPTRVS-DLEKAN-VRGARAVIV   68 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSCGG---GEE-EEESCT--THHHHHH----HTTCEEEESCTTSHH-HHHHTT-CTTCSEEEE
T ss_pred             EEEEECC-CHHHHHHHHHHcCC---CCE-EEEcch--HHHHHHH----hcCccccccccCCHH-HHHHhh-hhcCcEEEE
Confidence            3789997 99999999987543   343 456432  1122221    223333 2   2332 332211 136888884


Q ss_pred             ccCchhHH-HHHHHHHHC--CCcEEEeCCCCCHHHHHHHHHHhhhcCceEEEcCCCcHH
Q 027650          113 FTDASTVY-DNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG  168 (220)
Q Consensus       113 fT~p~~~~-~~~~~al~~--G~~vVigTtG~~~e~~~~L~~aA~~~~v~vviapNfS~G  168 (220)
                      .+.-+... ..+..+.+.  ..++|+-+  .+++..+.|+.    .|+-.+++|.--.|
T Consensus        69 ~~~~d~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~----~G~d~vi~p~~~~~  121 (129)
T d2fy8a1          69 NLESDSETIHCILGIRKIDESVRIIAEA--ERYENIEQLRM----AGADQVISPFVISG  121 (129)
T ss_dssp             CCSSHHHHHHHHHHHHHHCSSSCEEEEC--SSGGGHHHHHH----HHCSEEECHHHHHH
T ss_pred             eccchhhhHHHHHHHHHHCCCceEEEEE--cCHHHHHHHHH----CCCCEEEChHHHHH
Confidence            44433322 222333232  44666543  45566566654    35667787764333

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=84.62  E-value=0.2  Score=37.82  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=25.2

Q ss_pred             CCceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           34 SNIKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        34 ~~ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ...+|.|.|+ |++++.++..+.+. .-++. ++.++
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~-~~~i~-I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQA-QQNIV-LANRT   50 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHT-TCEEE-EEESS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHccc-Cceee-eccch
Confidence            3458999997 99999999888764 35654 55553

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.14  E-value=4.6  Score=31.16  Aligned_cols=83  Identities=14%  Similarity=0.112  Sum_probs=49.9

Q ss_pred             ceEEEEcCCC--HHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc-EEEE
Q 027650           36 IKVIINGAVK--EIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA-VVID  112 (220)
Q Consensus        36 ikV~V~Ga~G--rMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D-VVID  112 (220)
                      .++.|.|++|  ++|+.+++.+.+ .+.+|+ +.++..   +..+.              .++....   ..... +..|
T Consensus         9 K~alITGas~~~GIG~aiA~~la~-~Ga~V~-i~~~~~---~~~~~--------------~~~~~~~---~~~~~~~~~D   66 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKE-AGAEVA-LSYQAE---RLRPE--------------AEKLAEA---LGGALLFRAD   66 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHH-TTCEEE-EEESSG---GGHHH--------------HHHHHHH---TTCCEEEECC
T ss_pred             CEEEEECCCCCchHHHHHHHHHHH-CCCEEE-EEeCcH---HHHHH--------------HHHhhhc---cCcccccccc
Confidence            3689999987  799999999886 488875 445421   11110              1111111   01222 3457


Q ss_pred             ccCchhHHHHHHHHHHC--CCcEEEeCCCC
Q 027650          113 FTDASTVYDNVKQATAF--GMRSVVYVPHI  140 (220)
Q Consensus       113 fT~p~~~~~~~~~al~~--G~~vVigTtG~  140 (220)
                      .+.++...+.+..+.+.  ++.++|-.-|+
T Consensus        67 ~~~~~~v~~~~~~~~~~~g~iDilVnnag~   96 (256)
T d1ulua_          67 VTQDEELDALFAGVKEAFGGLDYLVHAIAF   96 (256)
T ss_dssp             TTCHHHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred             cCCHHHHHHHHHHHHHhcCCceEEEecccc
Confidence            88888887777665543  57778766554

>d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.52  E-value=5.2  Score=29.50  Aligned_cols=86  Identities=10%  Similarity=0.157  Sum_probs=53.4

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCccEEEEc---
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARAVVIDF---  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~DVVIDf---  113 (220)
                      +|+++.=+|.++..+...+.. .++-+.-++..   |.++          +    .+..++++.+.++++..+|+-+   
T Consensus        22 ~valiSqSG~l~~~~~~~~~~-~g~G~s~~vs~---Gn~~----------~----~~~~d~l~~l~~D~~t~~i~l~~E~   83 (161)
T d2csua2          22 NVAFISQSGALGAGIVYKTIK-EDIGFSKFISV---GNMA----------D----VDFAELMEYLADTEEDKAIALYIEG   83 (161)
T ss_dssp             SEEEEESCHHHHHHHHHHHHH-TTCEESEEEEC---TTCC----------S----SCHHHHHHHHTTCSSCCEEEEEESC
T ss_pred             CEEEEECCHHHHHHHHHHHHh-CCCCeeEEEec---CCcc----------c----cCHHHHHHHHhcCCCCcEEEEEecC
Confidence            699999999999999887765 46665555542   2111          1    1233333322234566666654   


Q ss_pred             -cCchhHHHHHHHHHHCCCcEEEeCCCCC
Q 027650          114 -TDASTVYDNVKQATAFGMRSVVYVPHIQ  141 (220)
Q Consensus       114 -T~p~~~~~~~~~al~~G~~vVigTtG~~  141 (220)
                       ..|+...+.++.+. .++|+|+-+.|-+
T Consensus        84 ~~~~~~f~~~~r~~~-~~Kpvv~~k~G~s  111 (161)
T d2csua2          84 VRNGKKFMEVAKRVT-KKKPIIALKAGKS  111 (161)
T ss_dssp             CSCHHHHHHHHHHHH-HHSCEEEEECC--
T ss_pred             CcCHHHHHHHHHHHh-ccCCeeEEEeecc
Confidence             46777778877765 5689998777644

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=82.39  E-value=0.57  Score=35.38  Aligned_cols=89  Identities=8%  Similarity=0.153  Sum_probs=49.0

Q ss_pred             CceEEEEcCCCHHHHH--HHHHHHhcCCc---EEEEEEecCC-----CCcchhhhhcC-CCCCCccccCCHHHHHhcccc
Q 027650           35 NIKVIINGAVKEIGRA--AVIAVTKARGM---EVAGAIDSHS-----VGEDIGMVCDM-EQPLEIPVMSDLTMVLGSISQ  103 (220)
Q Consensus        35 ~ikV~V~Ga~GrMG~~--i~~~i~~~~~~---eLvg~vd~~~-----~g~d~g~l~g~-~~~~gv~v~~dl~~~l~~~~~  103 (220)
                      .+||+|+|+ |..|..  +...+...+++   || ..+|.+.     .+.++...... +.+..+..++|..++++    
T Consensus         3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~ei-vL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~----   76 (167)
T d1u8xx1           3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKL-KLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFT----   76 (167)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEE-EEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHS----
T ss_pred             CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEE-EEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccC----
Confidence            579999998 776643  33445556665   44 4667531     01222221111 12334556789999886    


Q ss_pred             CCCccEEEEccCchhH---HHHHHHHHHCCC
Q 027650          104 SKARAVVIDFTDASTV---YDNVKQATAFGM  131 (220)
Q Consensus       104 ~~~~DVVIDfT~p~~~---~~~~~~al~~G~  131 (220)
                        ++|+||....+...   ...-+...++|+
T Consensus        77 --~AD~Vvitag~~~~~g~~rd~~i~~~~Gi  105 (167)
T d1u8xx1          77 --DVDFVMAHIRVGKYAMRALDEQIPLKYGV  105 (167)
T ss_dssp             --SCSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             --CCCEEEECCCcCCCCceeHHHhhchhcCc
Confidence              89998855433222   223345566676

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=82.20  E-value=2.5  Score=30.75  Aligned_cols=29  Identities=28%  Similarity=0.281  Sum_probs=24.6

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEE
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGA   66 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~   66 (220)
                      ||+|++.+|..|...+..+.. -+++|...
T Consensus         5 rvaiit~sGG~~~l~aD~~~~-~Gl~l~~l   33 (163)
T d2csua3           5 KVAIMTNAGGPGVLTADELDK-RGLKLATL   33 (163)
T ss_dssp             EEEEEESCHHHHHHHHHHHHT-TTCEECCC
T ss_pred             eEEEEECChHHHHHHHHHHHH-cCCccCCC
Confidence            899999999999999998865 48888654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=81.25  E-value=1.9  Score=33.60  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=25.8

Q ss_pred             ceEEEEcCCC--HHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVK--EIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~G--rMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .++.|.|++|  ++|+.+++.+.+ .+.+++. +++
T Consensus         6 K~alITGaag~~GIG~AiA~~la~-~Ga~V~i-~~r   39 (274)
T d2pd4a1           6 KKGLIVGVANNKSIAYGIAQSCFN-QGATLAF-TYL   39 (274)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHT-TTCEEEE-EES
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHH-CCCEEEE-EeC
Confidence            4688999877  699999999885 6999884 444

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.96  E-value=0.83  Score=34.91  Aligned_cols=32  Identities=28%  Similarity=0.534  Sum_probs=25.9

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecC
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSH   70 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~   70 (220)
                      ++.|.|+++++|+.+++.+.+. +.+|+. ++++
T Consensus         3 ~alITGas~GIG~aiA~~la~~-Ga~V~i-~~~~   34 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKAR-GYRVVV-LDLR   34 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH-TCEEEE-EESS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-CCEEEE-EECC
Confidence            5778899999999999999874 888765 4543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=6.1  Score=30.72  Aligned_cols=80  Identities=21%  Similarity=0.305  Sum_probs=50.1

Q ss_pred             eEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEecCCCCcchhhhhcCCCCCCccccCCHHHHHhccccCCCcc---EEEEc
Q 027650           37 KVIINGAVKEIGRAAVIAVTKARGMEVAGAIDSHSVGEDIGMVCDMEQPLEIPVMSDLTMVLGSISQSKARA---VVIDF  113 (220)
Q Consensus        37 kV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~~~~g~d~g~l~g~~~~~gv~v~~dl~~~l~~~~~~~~~D---VVIDf  113 (220)
                      -+.|.|+++++|+.+++.+.+. +..|+- +++..  +++.++.              +++-.     ....   +..|.
T Consensus         9 v~lITGas~GIG~~ia~~la~~-G~~V~l-~~r~~--~~l~~~~--------------~~~~~-----~~~~~~~~~~Dv   65 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKL-KSKLVL-WDINK--HGLEETA--------------AKCKG-----LGAKVHTFVVDC   65 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEE-EESCH--HHHHHHH--------------HHHHH-----TTCCEEEEECCT
T ss_pred             EEEEeCCCcHHHHHHHHHHHHC-CCEEEE-EECCH--HHHHHHH--------------HHHHh-----cCCcEEEEEeeC
Confidence            4677799999999999999864 888665 55431  1222211              11111     1222   34578


Q ss_pred             cCchhHHHHHHHHHH-CC-CcEEEeCCC
Q 027650          114 TDASTVYDNVKQATA-FG-MRSVVYVPH  139 (220)
Q Consensus       114 T~p~~~~~~~~~al~-~G-~~vVigTtG  139 (220)
                      |.++.+...++.+.+ .| +.++|-..|
T Consensus        66 s~~~~v~~~~~~i~~~~g~idilinnag   93 (244)
T d1yb1a_          66 SNREDIYSSAKKVKAEIGDVSILVNNAG   93 (244)
T ss_dssp             TCHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCceeEeecc
Confidence            889888887777754 44 777776654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=80.37  E-value=1.4  Score=35.06  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=25.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEE
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAI   67 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~v   67 (220)
                      ..+.|.|++|++|+.+++.+.+ .+.+|+...
T Consensus        26 K~alITGas~GIG~aiA~~la~-~Ga~Vii~~   56 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSS-LGAQCVIAS   56 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHH-cCCEEEEEE
Confidence            3588999999999999999886 588887543

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=80.10  E-value=0.85  Score=30.11  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=27.8

Q ss_pred             ceEEEEcCCCHHHHHHHHHHHhcCCcEEEEEEec
Q 027650           36 IKVIINGAVKEIGRAAVIAVTKARGMEVAGAIDS   69 (220)
Q Consensus        36 ikV~V~Ga~GrMG~~i~~~i~~~~~~eLvg~vd~   69 (220)
                      .+|.|.|++|.+|...+..+.. -++++++...+
T Consensus        33 ~~vlI~gasGgVG~~aiQlak~-~G~~Vi~~t~s   65 (77)
T d1o8ca2          33 GEIVVTGASGGVGSTAVALLHK-LGYQVVAVSGR   65 (77)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHH-TTCCEEEEESC
T ss_pred             CcEEEEeCCCcHHHHHHHHHHH-cCCeEEEEECC
Confidence            4799999999999999987655 58999987754