Citrus Sinensis ID: 027651

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
MLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPVLPQ
cccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHHcccEEccccccccccHHHHHHHHHHHHHHccccHHHHccEEEEEccccccccccccEEEEccccccccccccccccccccc
ccccccccccccHHHHHHHHHHHccccccccHHHcccccHHHHHHHHHcEccccccccccEccccccEEEcccccccEEccccccEEEEEcccccccEHccccccccccHHHHccccccEEEcccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccHHHcccEEEEEEccccccccEEEEEEEEEccccccccccccccccccc
mlrnpydrhelVRQDVKQVICSVCDTEQPVAQVCTncgvnmgeyfCDICKFYdddiekgqfhcddcgicriggrenyfhckrcgscystslrnnhlciensmhhhcpiCYEYLFDSlrnttvmkcghtmhcECYHemikrdkyccpicsksvidmsRTWKRIDEEIeatvmpedyrhkKVWILcndcndttEVYFHIIGqkcshcksyntrsiappvlpq
mlrnpydrhelvrqdVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKsvidmsrtwKRIDEEIeatvmpedyrhkKVWILCNDCNDTTEVYFHIIGQKcshcksyntrsiappvlpq
MLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPVLPQ
**********LVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNT**********
MLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAP*****
MLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPVLPQ
*******RHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTR*********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPVLPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query220 2.2.26 [Sep-21-2011]
Q9CR50261 RING finger and CHY zinc yes no 0.945 0.796 0.459 2e-49
Q96PM5261 RING finger and CHY zinc yes no 0.922 0.777 0.461 1e-48
O14099425 Uncharacterized RING fing yes no 0.945 0.489 0.441 2e-43
>sp|Q9CR50|ZN363_MOUSE RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1 Back     alignment and function desciption
 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/211 (45%), Positives = 130/211 (61%), Gaps = 3/211 (1%)

Query: 9   HELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGI 68
           H+L R  VK+V C  C+  Q   Q C +C    GEY+C IC  +D D  K Q+HC+ CGI
Sbjct: 50  HQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGI 107

Query: 69  CRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHT 128
           CRIG +E++FHC +C  C +T+LR  H CIEN    +CPIC E +  S     V+ CGH 
Sbjct: 108 CRIGPKEDFFHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHL 167

Query: 129 MHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCN 188
           +H  CY EM+K + Y CP+C  S +DM+R W+++D E+  T MP +Y++  V ILCNDCN
Sbjct: 168 LHRTCYEEMLK-EGYRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCN 226

Query: 189 DTTEVYFHIIGQKCSHCKSYNTRSIAPPVLP 219
             + V FHI+G KC  C SYNT       +P
Sbjct: 227 GRSTVQFHILGMKCKLCDSYNTAQAGGRRVP 257
Mediates E3-dependent ubiquitination and proteasomal degradation of target proteins, including p53/TP53, HDAC1 and CDKN1B. Preferentially acts on tetrameric p53/TP53. Increases AR transcription factor activity (By similarity). Contributes to the regulation of CDKN1B and p53/TP53 levels, and thereby contributes to the regulation of the cell cycle progression.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q96PM5|ZN363_HUMAN RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1 Back     alignment and function description
>sp|O14099|YERG_SCHPO Uncharacterized RING finger protein C2F3.16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.16 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
359806446267 uncharacterized protein LOC100792038 [Gl 1.0 0.823 0.85 1e-111
224102637269 predicted protein [Populus trichocarpa] 1.0 0.817 0.872 1e-111
356555553267 PREDICTED: RING finger and CHY zinc fing 1.0 0.823 0.840 1e-110
225432370267 PREDICTED: RING finger and CHY zinc fing 1.0 0.823 0.845 1e-110
297807887267 zinc finger family protein [Arabidopsis 0.995 0.820 0.849 1e-110
358248192267 uncharacterized protein LOC100812839 [Gl 1.0 0.823 0.840 1e-110
357447417267 RING finger and CHY zinc finger domain-c 1.0 0.823 0.845 1e-110
255551659269 zinc finger protein, putative [Ricinus c 0.995 0.814 0.867 1e-109
388519059267 unknown [Medicago truncatula] 1.0 0.823 0.840 1e-109
15238890267 ring finger and CHY zinc finger domain-c 0.995 0.820 0.844 1e-109
>gi|359806446|ref|NP_001241502.1| uncharacterized protein LOC100792038 [Glycine max] gi|255646865|gb|ACU23903.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 187/220 (85%), Positives = 210/220 (95%)

Query: 1   MLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQ 60
           +L+NP+DRHELVRQDVKQV+CSVCDTEQPVAQVCTNCGV MGEYFC+ICKF+DDD+EK Q
Sbjct: 48  LLKNPFDRHELVRQDVKQVVCSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDVEKEQ 107

Query: 61  FHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNT 120
           FHCDDCGICR+GGR+N+FHCK+CGSCY+  LR+NHLC+ENSM HHCPICYEYLFDSL++T
Sbjct: 108 FHCDDCGICRVGGRDNFFHCKKCGSCYAIGLRDNHLCVENSMRHHCPICYEYLFDSLKDT 167

Query: 121 TVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKV 180
            VMKCGHTMH ECY EMIK DKYCCPICSKSVIDMS+TWKRIDEEIEATVMPEDYR++KV
Sbjct: 168 IVMKCGHTMHHECYVEMIKNDKYCCPICSKSVIDMSKTWKRIDEEIEATVMPEDYRNRKV 227

Query: 181 WILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPVLPQ 220
           WILCNDCNDTTEVYFHI+GQKC HC+SYNTR++APPVLPQ
Sbjct: 228 WILCNDCNDTTEVYFHILGQKCGHCRSYNTRAVAPPVLPQ 267

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102637|ref|XP_002312758.1| predicted protein [Populus trichocarpa] gi|222852578|gb|EEE90125.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356555553|ref|XP_003546095.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225432370|ref|XP_002276039.1| PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Vitis vinifera] gi|297736904|emb|CBI26105.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297807887|ref|XP_002871827.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297317664|gb|EFH48086.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|358248192|ref|NP_001239836.1| uncharacterized protein LOC100812839 [Glycine max] gi|255636475|gb|ACU18576.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357447417|ref|XP_003593984.1| RING finger and CHY zinc finger domain-containing protein [Medicago truncatula] gi|355483032|gb|AES64235.1| RING finger and CHY zinc finger domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255551659|ref|XP_002516875.1| zinc finger protein, putative [Ricinus communis] gi|223543963|gb|EEF45489.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388519059|gb|AFK47591.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|15238890|ref|NP_197366.1| ring finger and CHY zinc finger domain-containing protein 1 [Arabidopsis thaliana] gi|17381208|gb|AAL36416.1| unknown protein [Arabidopsis thaliana] gi|20465813|gb|AAM20011.1| unknown protein [Arabidopsis thaliana] gi|332005211|gb|AED92594.1| ring finger and CHY zinc finger domain-containing protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
TAIR|locus:2180074267 MIEL1 "MYB30-Interacting E3 Li 0.995 0.820 0.844 6.6e-113
TAIR|locus:2099212287 AT3G62970 [Arabidopsis thalian 0.986 0.756 0.628 1e-82
TAIR|locus:2172656291 AT5G22920 [Arabidopsis thalian 0.936 0.707 0.601 2.1e-77
TAIR|locus:2179474328 AT5G25560 [Arabidopsis thalian 0.786 0.527 0.583 1e-61
ZFIN|ZDB-GENE-040801-73264 rchy1 "ring finger and CHY zin 0.918 0.765 0.455 6.1e-55
UNIPROTKB|E7ETW5239 RCHY1 "RING finger and CHY zin 0.904 0.832 0.470 2.6e-54
UNIPROTKB|Q96PM5261 RCHY1 "RING finger and CHY zin 0.904 0.762 0.470 2.6e-54
MGI|MGI:1915348261 Rchy1 "ring finger and CHY zin 0.904 0.762 0.475 4.3e-54
UNIPROTKB|A4IFE2261 RCHY1 "RCHY1 protein" [Bos tau 0.904 0.762 0.460 5.5e-54
RGD|1359180261 Rchy1 "ring finger and CHY zin 0.940 0.793 0.452 1.5e-53
TAIR|locus:2180074 MIEL1 "MYB30-Interacting E3 Ligase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
 Identities = 185/219 (84%), Positives = 203/219 (92%)

Query:     2 LRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQF 61
             LRN YDRH+LVRQDVKQVICSVCDTEQP AQVC+NCGVNMGEYFC IC FYDDD EK QF
Sbjct:    49 LRNIYDRHDLVRQDVKQVICSVCDTEQPAAQVCSNCGVNMGEYFCSICIFYDDDTEKQQF 108

Query:    62 HCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTT 121
             HCDDCGICR+GGREN+FHCK+CGSCY+  LRNNH C+ENSM HHCPICYEYLFDSL++T 
Sbjct:   109 HCDDCGICRVGGRENFFHCKKCGSCYAVGLRNNHRCVENSMRHHCPICYEYLFDSLKDTN 168

Query:   122 VMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVW 181
             VMKCGHTMH ECY+EMIKRDK+CCPICS+SVIDMS+TW+R+DEEIEAT MP DYR KKVW
Sbjct:   169 VMKCGHTMHVECYNEMIKRDKFCCPICSRSVIDMSKTWQRLDEEIEATAMPSDYRDKKVW 228

Query:   182 ILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPVLPQ 220
             ILCNDCNDTTEV+FHIIGQKC HC+SYNTR+IAPPVLPQ
Sbjct:   229 ILCNDCNDTTEVHFHIIGQKCGHCRSYNTRAIAPPVLPQ 267
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA;ISS
TAIR|locus:2099212 AT3G62970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172656 AT5G22920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179474 AT5G25560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040801-73 rchy1 "ring finger and CHY zinc finger domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E7ETW5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q96PM5 RCHY1 "RING finger and CHY zinc finger domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1915348 Rchy1 "ring finger and CHY zinc finger domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A4IFE2 RCHY1 "RCHY1 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1359180 Rchy1 "ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00081956
hypothetical protein (269 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
pfam0549574 pfam05495, zf-CHY, CHY zinc finger 5e-08
cd0016245 cd00162, RING, RING-finger (Really Interesting New 3e-04
smart0018440 smart00184, RING, Ring finger 9e-04
>gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger Back     alignment and domain information 
 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 8  RHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYD 53
           H L R +VK V+C VC TEQ V +   NCGV   +Y+C ICK + 
Sbjct: 31 DHPLDRWNVKAVLCGVCRTEQTVQE--YNCGVEFADYYCPICKLFF 74

This family of domains are likely to bind to zinc ions. They contain many conserved cysteine and histidine residues. We have named this domain after the N-terminal motif CXHY. This domain can be found in isolation in some proteins, but is also often associated with pfam00097. One of the proteins in this family is a mitochondrial intermembrane space protein called Hot13. This protein is involved in the assembly of small TIM complexes. Length = 74
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>gnl|CDD|214546 smart00184, RING, Ring finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 220
KOG1940276 consensus Zn-finger protein [General function pred 100.0
PF1459961 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A. 99.97
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 99.4
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 99.04
cd0016245 RING RING-finger (Really Interesting New Gene) dom 99.03
COG5243491 HRD1 HRD ubiquitin ligase complex, ER membrane com 99.02
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 98.99
PF0549571 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc 98.89
PHA02929238 N1R/p28-like protein; Provisional 98.87
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 98.86
PF1286185 zf-Apc11: Anaphase-promoting complex subunit 11 RI 98.8
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 98.73
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 98.72
COG5540374 RING-finger-containing ubiquitin ligase [Posttrans 98.71
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 98.7
KOG0804 493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 98.67
PF1463444 zf-RING_5: zinc-RING finger domain 98.67
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 98.56
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 98.55
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 98.44
KOG0802 543 consensus E3 ubiquitin ligase [Posttranslational m 98.41
PHA02926242 zinc finger-like protein; Provisional 98.28
smart0050463 Ubox Modified RING finger domain. Modified RING fi 98.18
KOG0320187 consensus Predicted E3 ubiquitin ligase [Posttrans 98.09
smart0074449 RINGv The RING-variant domain is a C4HC3 zinc-fing 98.01
COG519488 APC11 Component of SCF ubiquitin ligase and anapha 97.99
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.86
KOG149384 consensus Anaphase-promoting complex (APC), subuni 97.82
PF1179370 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A. 97.81
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 97.69
KOG0317293 consensus Predicted E3 ubiquitin ligase, integral 97.69
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 97.69
KOG0827 465 consensus Predicted E3 ubiquitin ligase [Posttrans 97.63
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 97.41
KOG2164 513 consensus Predicted E3 ubiquitin ligase [Posttrans 97.36
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 97.35
KOG0828636 consensus Predicted E3 ubiquitin ligase [Posttrans 97.29
KOG0823230 consensus Predicted E3 ubiquitin ligase [Posttrans 97.25
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 97.14
KOG1941518 consensus Acetylcholine receptor-associated protei 97.11
PF1483565 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM 96.99
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 96.93
KOG1039344 consensus Predicted E3 ubiquitin ligase [Posttrans 96.74
KOG4265349 consensus Predicted E3 ubiquitin ligase [Posttrans 96.65
KOG2930114 consensus SCF ubiquitin ligase, Rbx1 component [Po 96.53
COG5574271 PEX10 RING-finger-containing E3 ubiquitin ligase [ 96.53
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 96.53
COG52191525 Uncharacterized conserved protein, contains RING Z 96.42
KOG0825 1134 consensus PHD Zn-finger protein [General function 96.4
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 96.39
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 96.31
KOG0311 381 consensus Predicted E3 ubiquitin ligase [Posttrans 96.2
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 96.09
KOG3002 299 consensus Zn finger protein [General function pred 95.92
KOG1785563 consensus Tyrosine kinase negative regulator CBL [ 95.78
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 95.57
PF10367109 Vps39_2: Vacuolar sorting protein 39 domain 2; Int 95.54
KOG2879298 consensus Predicted E3 ubiquitin ligase [Posttrans 95.31
PF1290647 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A. 95.27
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 95.07
KOG3800 300 consensus Predicted E3 ubiquitin ligase containing 94.96
KOG0824 324 consensus Predicted E3 ubiquitin ligase [Posttrans 94.72
KOG3970 299 consensus Predicted E3 ubiquitin ligase [Posttrans 94.65
PF1444755 Prok-RING_4: Prokaryotic RING finger family 4 94.43
KOG4739 233 consensus Uncharacterized protein involved in syna 93.78
KOG4185 296 consensus Predicted E3 ubiquitin ligase [Posttrans 93.58
TIGR00100115 hypA hydrogenase nickel insertion protein HypA. In 93.39
COG5175 480 MOT2 Transcriptional repressor [Transcription] 93.19
PRK1489059 putative Zn-ribbon RNA-binding protein; Provisiona 93.08
PRK00564117 hypA hydrogenase nickel incorporation protein; Pro 93.04
KOG4445 368 consensus Uncharacterized conserved protein, conta 93.0
PF05883134 Baculo_RING: Baculovirus U-box/Ring-like domain; I 92.81
PHA02862156 5L protein; Provisional 92.59
PRK03824135 hypA hydrogenase nickel incorporation protein; Pro 92.58
KOG2817394 consensus Predicted E3 ubiquitin ligase [Posttrans 92.43
PF04641260 Rtf2: Rtf2 RING-finger 92.24
KOG3268234 consensus Predicted E3 ubiquitin ligase [Posttrans 92.18
PRK12380113 hydrogenase nickel incorporation protein HybF; Pro 92.03
KOG0297 391 consensus TNF receptor-associated factor [Signal t 91.81
PRK03681114 hypA hydrogenase nickel incorporation protein; Val 91.75
KOG4275350 consensus Predicted E3 ubiquitin ligase [Posttrans 91.48
PF01155113 HypA: Hydrogenase expression/synthesis hypA family 90.73
KOG1571355 consensus Predicted E3 ubiquitin ligase [Posttrans 90.49
KOG2114933 consensus Vacuolar assembly/sorting protein PEP5/V 90.46
KOG1813313 consensus Predicted E3 ubiquitin ligase [Posttrans 90.33
PHA02825162 LAP/PHD finger-like protein; Provisional 90.22
KOG2660 331 consensus Locus-specific chromosome binding protei 89.92
PF1277350 DZR: Double zinc ribbon 89.73
KOG3039303 consensus Uncharacterized conserved protein [Funct 89.62
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 89.61
KOG4159 398 consensus Predicted E3 ubiquitin ligase [Posttrans 89.51
PF0719170 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 89.37
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 88.38
KOG1002 791 consensus Nucleotide excision repair protein RAD16 88.24
PRK00762124 hypA hydrogenase nickel incorporation protein; Pro 87.89
COG5152259 Uncharacterized conserved protein, contains RING a 86.97
KOG03091081 consensus Conserved WD40 repeat-containing protein 86.97
COG0375115 HybF Zn finger protein HypA/HybF (possibly regulat 86.8
KOG1952 950 consensus Transcription factor NF-X1, contains NFX 86.15
KOG4692489 consensus Predicted E3 ubiquitin ligase [Posttrans 86.09
TIGR0260552 CxxC_CxxC_SSSS putative regulatory protein, FmdB f 85.47
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 84.97
PRK04023 1121 DNA polymerase II large subunit; Validated 84.09
COG288861 Predicted Zn-ribbon RNA-binding protein with a fun 83.36
PF14353128 CpXC: CpXC protein 83.21
KOG2034911 consensus Vacuolar sorting protein PEP3/VPS18 [Int 82.81
COG5220 314 TFB3 Cdk activating kinase (CAK)/RNA polymerase II 82.56
PF0874643 zf-RING-like: RING-like domain; InterPro: IPR01485 81.46
PF0385450 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc 80.24
KOG1701468 consensus Focal adhesion adaptor protein Paxillin 80.19
KOG3161 861 consensus Predicted E3 ubiquitin ligase [Posttrans 80.14
>KOG1940 consensus Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=9.9e-63  Score=438.73  Aligned_cols=213  Identities=49%  Similarity=1.023  Sum_probs=207.0

Q ss_pred             CcCCCccccccccceEEeCCCCCCCcccccccccCcccceecCCccccccCCCCCCcccCCCCCccccCCccceeecCCc
Q 027651            4 NPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRC   83 (220)
Q Consensus         4 d~~~~H~l~R~~v~~i~C~~C~~~q~~~~~C~~Cg~~~a~yfC~~C~l~dd~~~k~~yHC~~CgiCR~G~~~~~fHC~~C   83 (220)
                      +++++|.+||+.|.+|+|+.|.++|++++.|.+|+..+|+|||.+|+||||+++ +||||+.|||||+|++++||||++|
T Consensus        60 ~~s~~h~~~r~~v~~~~C~~C~~~q~~~~~c~~c~~~~g~~~c~~C~l~dd~~~-~~~hC~~C~icr~g~~~~~fhc~~c  138 (276)
T KOG1940|consen   60 NESEDHDLDRKTVYELLCMKCRKIQPVGQICSNCHVELGEYYCLICKLFDDDPS-KQYHCDLCGICREGLGLDFFHCKKC  138 (276)
T ss_pred             ChhhhcccchhhhhhhhhhhHHhhhhhhhccccchhhhhhhcCccccccccccc-ceeccccccccccccccchhHHhhh
Confidence            556799999999999999999999999999999999999999999999999988 9999999999999999999999999


Q ss_pred             CccccccccCcceeecCCCCCCCccchhhccccCCceEEccCCCccChHHHHHHhcCCCCCCCCCCcCccchhHHHHHHH
Q 027651           84 GSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRID  163 (220)
Q Consensus        84 ~~C~s~~l~~~H~CiE~s~~~~CPICle~lf~s~~~v~~LpCGH~~H~~C~~~~l~~~~~~CPiCrksi~dm~~~~~~lD  163 (220)
                      +.|++..+.++|+|+|++++.+||||.|+||++...+.+|+|||.+|..||+++...+ |+||+|.+ ++||+.+|+++|
T Consensus       139 ~~c~~~~~~~~H~c~e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~-~~d~~~~~~~~d  216 (276)
T KOG1940|consen  139 KACLSAYLSNWHKCVERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK-PGDMSHYFRKLD  216 (276)
T ss_pred             HhHHhhhcccccchhhhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc-hHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999866 99999999 999999999999


Q ss_pred             HHHHhcCCChhhhcCeeEEEccCCCCcceeeeeEeeecCCCCCCccccccCCCCCC
Q 027651          164 EEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRSIAPPVLP  219 (220)
Q Consensus       164 ~~i~~~pmP~~y~~~~v~I~CnDC~~~s~~~~H~lg~kC~~C~SyNT~~~~~~~~~  219 (220)
                      .+|+++|||++|++++++|+||||+..++++|||||+||+.|+|||||+++.|..+
T Consensus       217 ~~l~~~~~p~~y~~~~~~i~cndC~~~~~~k~~~l~~kc~~c~~~~~r~~~~~~~~  272 (276)
T KOG1940|consen  217 KELAGSPMPEEYKNKTQDILCNDCGSGTNVKYHILYHKCGKCGSYNTRMISDPSKY  272 (276)
T ss_pred             HHHhcCCCCchhhchhheeeccCCCCCCccceehhhhhCCCcccceeeeccCCCcc
Confidence            99999999999999999999999999999999999999999999999999877654

>PF14599 zinc_ribbon_6: Zinc-ribbon; PDB: 2K2D_A Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05495 zf-CHY: CHY zinc finger; InterPro: IPR008913 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins Back     alignment and domain information
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1 Back     alignment and domain information
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4 Back     alignment and domain information
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00100 hypA hydrogenase nickel insertion protein HypA Back     alignment and domain information
>COG5175 MOT2 Transcriptional repressor [Transcription] Back     alignment and domain information
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional Back     alignment and domain information
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length Back     alignment and domain information
>PHA02862 5L protein; Provisional Back     alignment and domain information
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional Back     alignment and domain information
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms] Back     alignment and domain information
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated Back     alignment and domain information
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation Back     alignment and domain information
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA02825 LAP/PHD finger-like protein; Provisional Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>PF12773 DZR: Double zinc ribbon Back     alignment and domain information
>KOG3039 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length Back     alignment and domain information
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] Back     alignment and domain information
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional Back     alignment and domain information
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only] Back     alignment and domain information
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription] Back     alignment and domain information
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>PRK04023 DNA polymerase II large subunit; Validated Back     alignment and domain information
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF14353 CpXC: CpXC protein Back     alignment and domain information
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO) Back     alignment and domain information
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
2dkt_A143 Solution Structure Of The Chy Zinc Finger Domain Of 7e-19
2k2c_A137 Solution Nmr Structure Of N-Terminal Domain Of Huma 1e-17
2k2d_A79 Solution Nmr Structure Of C-Terminal Domain Of Huma 7e-14
2jrj_A52 Solution Structure Of The Human Pirh2 Ring-H2 Domai 2e-04
2ecm_A55 Solution Structure Of The Ring Domain Of The Ring F 4e-04
>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 143 Back     alignment and structure 
Iteration: 1

 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 9   HELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGI 68
           H+L R  VK+V C  C+  Q   Q C +C    GEY+C IC  +D D  K Q+HC+ CGI
Sbjct: 49  HQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSICHLFDKD--KRQYHCESCGI 106
Query: 69  CRIGGRENYFHCKRCGSCYSTSLRNNHLCIENS 101
           CRIG +E++FHC +C  C +T+LR  H CIE+ 
Sbjct: 107 CRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESG 139
>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2a Length = 137 Back     alignment and structure
>pdb|2K2D|A Chain A, Solution Nmr Structure Of C-Terminal Domain Of Human Pirh2. Northeast Structural Genomics Consortium (Nesg) Target Ht2c Length = 79 Back     alignment and structure
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain. Northeast Structural Genomics Consortium Target Ht2b Length = 52 Back     alignment and structure
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And Chy Zinc Finger Domain-Containing Protein 1 From Mus Musculus Length = 55 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
2k2d_A79 Ring finger and CHY zinc finger domain- containing 1e-30
2dkt_A143 Ring finger and CHY zinc finger domain- containing 2e-28
2ecm_A55 Ring finger and CHY zinc finger domain- containing 7e-14
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 2e-07
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 2e-05
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 5e-04
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 9e-04
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Length = 79 Back     alignment and structure
 Score =  107 bits (268), Expect = 1e-30
 Identities = 31/73 (42%), Positives = 45/73 (61%)

Query: 147 ICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVWILCNDCNDTTEVYFHIIGQKCSHCK 206
               S +DM+R W+++D+E+  T MP +Y++  V ILCNDCN  + V FHI+G KC  C+
Sbjct: 3   HMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICE 62

Query: 207 SYNTRSIAPPVLP 219
           SYNT       + 
Sbjct: 63  SYNTAQAGGRRIS 75
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Length = 143 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55 Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389 Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115 Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
2dkt_A143 Ring finger and CHY zinc finger domain- containing 100.0
2k2d_A79 Ring finger and CHY zinc finger domain- containing 99.97
2ecm_A55 Ring finger and CHY zinc finger domain- containing 99.44
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 99.38
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 99.37
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 99.35
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 99.34
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 99.33
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 99.31
2ect_A78 Ring finger protein 126; metal binding protein, st 99.29
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 99.28
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 99.24
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 99.24
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 99.23
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 99.22
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 99.19
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 99.19
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 99.16
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 99.13
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 99.13
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 99.11
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 99.07
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 99.06
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 99.06
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 99.06
2ysl_A73 Tripartite motif-containing protein 31; ring-type 99.06
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 99.05
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 99.05
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 98.99
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 98.98
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 98.96
2ysj_A63 Tripartite motif-containing protein 31; ring-type 98.95
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 98.95
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 98.93
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 98.93
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 98.92
2ecw_A85 Tripartite motif-containing protein 30; metal bind 98.91
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 98.91
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 98.91
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 98.9
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 98.89
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 98.89
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 98.88
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 98.87
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 98.87
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 98.84
1z6u_A150 NP95-like ring finger protein isoform B; structura 98.82
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 98.79
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 98.63
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 98.6
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 98.56
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 98.55
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 98.53
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 98.51
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 98.49
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 98.46
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 98.45
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 98.42
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.38
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 98.38
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 98.38
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 98.34
2ea5_A68 Cell growth regulator with ring finger domain prot 98.33
1vyx_A60 ORF K3, K3RING; zinc-binding protein, ring domain, 98.32
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 98.27
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 98.2
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 98.14
3k1l_B381 Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A 98.07
2f42_A179 STIP1 homology and U-box containing protein 1; cha 98.05
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 97.82
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 97.76
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 97.42
3vk6_A101 E3 ubiquitin-protein ligase hakai; HYB, phosphotyr 97.41
3nw0_A238 Non-structural maintenance of chromosomes element 95.79
3a43_A139 HYPD, hydrogenase nickel incorporation protein HYP 91.73
2ko5_A99 Ring finger protein Z; lassa fever virus-Z, negati 89.89
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 89.44
2jun_A101 Midline-1; B-BOX, TRIM, ring finger, alternative s 88.72
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 87.7
2kdx_A119 HYPA, hydrogenase/urease nickel incorporation prot 87.38
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 85.44
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 82.95
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 82.54
2jrp_A81 Putative cytoplasmic protein; two-zinc binding pro 81.73
1weo_A93 Cellulose synthase, catalytic subunit (IRX3); stru 80.57
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A Back     alignment and structure
Probab=100.00  E-value=1.9e-40  Score=270.09  Aligned_cols=99  Identities=43%  Similarity=1.042  Sum_probs=95.2

Q ss_pred             CcCCCccccccccceEEeCCCCCCCcccccccccCcccceecCCccccccCCCCCCcccCCCCCccccCCccceeecCCc
Q 027651            4 NPYDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRC   83 (220)
Q Consensus         4 d~~~~H~l~R~~v~~i~C~~C~~~q~~~~~C~~Cg~~~a~yfC~~C~l~dd~~~k~~yHC~~CgiCR~G~~~~~fHC~~C   83 (220)
                      ||.++|+|+|++|++|+|+.|.++|++++.|.+||+.||+|||+||||||  ++|+|||||+|||||||+++|||||++|
T Consensus        44 de~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C  121 (143)
T 2dkt_A           44 DTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDCSTLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKC  121 (143)
T ss_dssp             HHTSSSCCCSSSCCCEEESSSCCEECSCSBCSSSCCBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTT
T ss_pred             ccccccccchhccceeeecccCccccccCcCCCCCccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcC
Confidence            56789999999999999999999999999999999999999999999997  4699999999999999999999999999


Q ss_pred             CccccccccCcceeecCCCCC
Q 027651           84 GSCYSTSLRNNHLCIENSMHH  104 (220)
Q Consensus        84 ~~C~s~~l~~~H~CiE~s~~~  104 (220)
                      |+|||++|+++|+|+|+++++
T Consensus       122 ~~C~s~~l~~~H~C~e~~~~s  142 (143)
T 2dkt_A          122 NLCLTTNLRGKHKCIESGPSS  142 (143)
T ss_dssp             TEEEEGGGSSSSCCSCCCSCC
T ss_pred             CeeeccccCcCcccCccCccC
Confidence            999999999999999999864
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Back     alignment and structure
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Back     alignment and structure
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 220
d2dkta256 g.93.1.1 (A:82-137) RING finger and CHY zinc finge 3e-21
d1fbva479 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta 1e-04
d1ur6b_52 g.44.1.1 (B:) Not-4 N-terminal RING finger domain 9e-04
d1rmda286 g.44.1.1 (A:1-86) V(D)J recombination activating p 0.003
d1iyma_55 g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati 0.003
d1bora_56 g.44.1.1 (A:) Acute promyelocytic leukaemia proto- 0.004
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 56 Back     information, alignment and structure

class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.3 bits (201), Expect = 3e-21
 Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 2/58 (3%)

Query: 42 GEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIE 99
          GEY+C IC  +D D  K Q+HC+ CGICRIG +E++FHC +C  C +T+LR  H CIE
Sbjct: 1  GEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIE 56
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55 Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
d2dkta256 RING finger and CHY zinc finger domain-containing 99.96
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 99.49
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 99.43
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 99.38
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 99.35
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 99.32
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 99.27
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 99.21
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 98.94
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.93
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 98.92
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.84
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 98.83
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.78
d2c2la280 STIP1 homology and U box-containing protein 1, STU 98.64
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.63
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 98.4
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 97.84
d2dkta174 RING finger and CHY zinc finger domain-containing 97.61
d2jnea171 Hypothetical protein YfgJ {Escherichia coli [TaxId 90.42
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 84.18
d2dkta256 RING finger and CHY zinc finger domain-containing 81.4
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 80.13
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: Zinc hairpin stack
superfamily: Zinc hairpin stack
family: Zinc hairpin stack
domain: RING finger and CHY zinc finger domain-containing protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.5e-31  Score=182.71  Aligned_cols=56  Identities=57%  Similarity=1.450  Sum_probs=54.2

Q ss_pred             ceecCCccccccCCCCCCcccCCCCCccccCCccceeecCCcCccccccccCcceeec
Q 027651           42 GEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIE   99 (220)
Q Consensus        42 a~yfC~~C~l~dd~~~k~~yHC~~CgiCR~G~~~~~fHC~~C~~C~s~~l~~~H~CiE   99 (220)
                      |+|||+||||||||  |+|||||+|||||||++++||||++|++|+|++|+++|+|+|
T Consensus         1 G~YfC~iC~l~ddd--k~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~l~~~H~CiE   56 (56)
T d2dkta2           1 GEYYCSICHLFDKD--KRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIE   56 (56)
T ss_dssp             CSEECSSSCCEECS--SSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSC
T ss_pred             CceECCcCCcccCC--CCcccCCCCCceeecCCccccccCccccccCcccCCCccccC
Confidence            68999999999885  999999999999999999999999999999999999999997
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure