Citrus Sinensis ID: 027658

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Secondary Structure (PSIPRED)
ccccccHHHHcccccccccccccccccccHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
mvrgktqmrrIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIifsprgklseFASSSMQETIERYLKHTkdtrnkqqpteQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRleekcgmenwqgskeqpenltnddgastsdvetelfigppperrarrlaippqn
Flexible Loop (DISEMBL)
mvrgktqmrrienatsrqvtfskrrnGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIaqlkekgkvlEAENTRleekcgmenwqgskeqpenltnddgastsdvetelfigppperrarrlaippqn
Low Complexity Region (SEG)
MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTleelqqierqleKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Disordered region (IsUnstruct)
************************RNGLLKKAFELSVLCDAEVAVIIF*************************************************VKKIELLEVSKRKLLGEGLASCTLEEL************************************************************************************************
Disordered Region (DISOPRED)
MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK*******************KHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE****************************************************
Disordered Region (DISEMBL)
******************VTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Disordered Region (DISPRO)
*****TQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQG******************VETEL*I*PPP*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNxxxxxxxxxxxxxxxxxxxxxKRKLLGEGLASCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
O64645	214	MADS-box protein SOC1 OS=	yes	no	0.954	0.981	0.671	7e-73
O82743	219	Agamous-like MADS-box pro	no	no	0.95	0.954	0.539	6e-57
Q9XJ60	230	MADS-box transcription fa	yes	no	0.936	0.895	0.542	4e-56
A2Z9Q7	233	MADS-box transcription fa	N/A	no	0.954	0.901	0.497	2e-51
Q38838	221	Agamous-like MADS-box pro	no	no	0.977	0.972	0.539	2e-51
P0C5B2	233	MADS-box transcription fa	no	no	0.954	0.901	0.488	1e-49
Q40704	236	MADS-box transcription fa	no	no	0.922	0.860	0.431	1e-40
Q0D4T4	249	MADS-box transcription fa	no	no	0.763	0.674	0.502	1e-39
A2YNI2	249	MADS-box transcription fa	N/A	no	0.763	0.674	0.502	1e-39
Q6EU39	250	MADS-box transcription fa	no	no	0.927	0.816	0.441	6e-39

>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1

 Score =  273 bits (698), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 143/213 (67%), Positives = 173/213 (81%), Gaps = 3/213 (1%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQM+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV++IIFSP+GKL EFASS
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
           +MQ+TI+RYL+HTKD  + +  +E+NMQHLK+EAANM+KKIE LE SKRKLLGEG+ +C+
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCS 120

Query: 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG---MENWQ 177
           +EELQQIE+QLEKSV  IRARK QVF EQI QLK+K K L AEN +L EK G    E W 
Sbjct: 121 IEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWS 180

Query: 178 GSKEQPENLTNDDGASTSDVETELFIGPPPERR 210
              ++     +++ + +S+VET+LFIG P   R
Sbjct: 181 NKNQESTGRGDEESSPSSEVETQLFIGLPCSSR 213

Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulates class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development.
Arabidopsis thaliana (taxid: 3702)

>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1

 Score =  220 bits (561), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 124/230 (53%), Positives = 159/230 (69%), Gaps = 21/230 (9%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKT+M+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA++IFSPR KL EF+SS
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
           S+  TIERY +  K+  N  +  + N Q  + E + + KKIE LE+SKRKLLGEG+ +C+
Sbjct: 61  SIAATIERYQRRIKEIGNNHKRND-NSQQARDETSGLTKKIEQLEISKRKLLGEGIDACS 119

Query: 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQG-- 178
           +EELQQ+E QL++S+S IRA+K Q+  E+I +LK + + L  EN  L+EK     W G  
Sbjct: 120 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK-----WLGMG 174

Query: 179 --------SKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 220
                   S      +  DD     +VET LFIGPP  R++++   PPQN
Sbjct: 175 TATIASSQSTLSSSEVNIDDNM---EVETGLFIGPPETRQSKKF--PPQN 219

Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XJ60|MAD50_ORYSJ MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1

 Score =  217 bits (553), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 120/221 (54%), Positives = 154/221 (69%), Gaps = 15/221 (6%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQM+RIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRGKL EFAS+
Sbjct: 1   MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61  SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
           S Q+TIERY  +TK+     +  +Q+++ +K +A  + KK+E LE  KRKLLGE L  C+
Sbjct: 61  STQKTIERYRTYTKENIG-NKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECS 119

Query: 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME------ 174
           +EEL  +E +LE+S+ +IR RK ++  EQ+A+L+EK   L  +N  L EKC  +      
Sbjct: 120 IEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPLSAP 179

Query: 175 -NWQGSKEQPE---NLTNDDGASTSDVETELFIGPPPERRA 211
              +   E P+   N TND+     DVETELFIG P   R+
Sbjct: 180 LTVRAEDENPDRNINTTNDN----MDVETELFIGLPGRSRS 216

Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Z9Q7|MAD56_ORYSI MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2

 Score =  202 bits (513), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/227 (49%), Positives = 153/227 (67%), Gaps = 17/227 (7%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRG+T+++RIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRG+L EFAS+
Sbjct: 1   MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

Query: 61  -SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
            S+Q+TI+RY  +TKD  N  +  +Q++Q +K +   + KK+E L+ S+RK+LGE L  C
Sbjct: 61  PSLQKTIDRYKAYTKDHVN-NKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGC 119

Query: 120 TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVL--EAENTR-----LEEKCG 172
           ++EEL+ +E +LEKS+ NIR +K ++   QIA+LKEK + L  + EN R     LE    
Sbjct: 120 SIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAAAL 179

Query: 173 MENWQGSKEQPENLTND--------DGASTSDVETELFIGPPPERRA 211
           + N   +   P     D          A   DVET+L+IG P   R+
Sbjct: 180 VANHMTTTTAPAAWPRDVPMTSSTAGAADAMDVETDLYIGLPGTERS 226

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2

 Score =  201 bits (512), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/226 (53%), Positives = 156/226 (69%), Gaps = 11/226 (4%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEF-AS 59
           MVRGKT+M+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+IIFSPRGKL EF +S
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 60  SSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
           SS+ +T+ERY K  +D  +  +  + N Q  K E   + +KIE LE+S RK++GEGL + 
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHKRND-NSQQSKDETYGLARKIEHLEISTRKMMGEGLDAS 119

Query: 120 TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME----- 174
           ++EELQQ+E QL++S+  IRA+K Q+  E+  +LKEK + L AEN  L EKC M+     
Sbjct: 120 SIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGII 179

Query: 175 NWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 220
               S      L  DD  +  +V T+LFIGPP  R  ++   PP N
Sbjct: 180 GRISSSSSTSELDIDD--NEMEVVTDLFIGPPETRHFKKF--PPSN 221

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C5B2|MAD56_ORYSJ MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1

 Score =  196 bits (498), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/227 (48%), Positives = 152/227 (66%), Gaps = 17/227 (7%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRG+T+++RIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRG+L EFAS+
Sbjct: 1   MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

Query: 61  -SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
            S+Q+TI+RY  +TKD  N  +  +Q++Q +K +   + KK+E L+ S+RK+LGE L   
Sbjct: 61  PSLQKTIDRYKAYTKDHVN-NKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGF 119

Query: 120 TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVL--EAENTR-----LEEKCG 172
           ++EEL+ +E +LEKS+  IR +K ++  +QIA+LKEK + L  + EN R     LE    
Sbjct: 120 SIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAAAL 179

Query: 173 MENWQGSKEQPENLTND--------DGASTSDVETELFIGPPPERRA 211
           + N   +   P     D          A   DVET+L+IG P   R+
Sbjct: 180 VANHMTTTTAPAAWPRDVPMTSSTAGAADAMDVETDLYIGLPGTERS 226

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/211 (43%), Positives = 142/211 (67%), Gaps = 8/211 (3%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           M RGK +++RIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVA+I+FS RG+L E+A++
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANN 60

Query: 61  SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLE-VSKRKLLGEGLASC 119
           S++ T+ERY K   DT N     E N QH + E++ + ++I  L+  + R ++G+ + + 
Sbjct: 61  SVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTM 120

Query: 120 TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGS 179
           +L +L+Q+E +LEK ++ IRARKN++   ++  ++++   L+ +N  L  K  +EN +G 
Sbjct: 121 SLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKV-VENERG- 178

Query: 180 KEQPENLTNDDGASTSDVETELFIGPPPERR 210
            +QP N+     ASTS  E +  +  P + R
Sbjct: 179 -QQPLNMM--GAASTS--EYDHMVNNPYDSR 204

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0D4T4|MAD18_ORYSJ MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 125/169 (73%), Gaps = 1/169 (0%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS- 59
           M RG  Q+RRIEN  +RQVTFSKRRNGLLKKA E+SVLCDA+VA+I+FS +GKL EF+S 
Sbjct: 1   MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSH 60

Query: 60  SSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
           SSM+  +ERY +++ D R   +P  ++ ++   E   +  K++ L+ S+R+LLGE L + 
Sbjct: 61  SSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTL 120

Query: 120 TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE 168
           T++ELQQ+E QLE S+ +IR++KNQ+  E I++L++K K L+ +N  L+
Sbjct: 121 TIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQ 169

Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YNI2|MAD18_ORYSI MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 85/169 (50%), Positives = 125/169 (73%), Gaps = 1/169 (0%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS- 59
           M RG  Q+RRIEN  +RQVTFSKRRNGLLKKA E+SVLCDA+VA+I+FS +GKL EF+S 
Sbjct: 1   MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSH 60

Query: 60  SSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
           SSM+  +ERY +++ D R   +P  ++ ++   E   +  K++ L+ S+R+LLGE L + 
Sbjct: 61  SSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTL 120

Query: 120 TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE 168
           T++ELQQ+E QLE S+ +IR++KNQ+  E I++L++K K L+ +N  L+
Sbjct: 121 TIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQ 169

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1

 Score =  160 bits (405), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 95/215 (44%), Positives = 133/215 (61%), Gaps = 11/215 (5%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           M RG+ +++RIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  SMQETIERY---LKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLA 117
            + +T+ERY     + +D+ N    T    Q   HE + +  K E L+ ++R LLGE L 
Sbjct: 61  GITKTLERYQHCCYNAQDSNNALSET----QSWYHEMSKLKAKFEALQRTQRHLLGEDLG 116

Query: 118 SCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQ 177
             +++ELQQ+E+QLE ++S  R RK Q+  EQ+ +L+ K + L   N +L+ K  +E   
Sbjct: 117 PLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVE--- 173

Query: 178 GSKEQPENLTNDDGASTSDVET-ELFIGPPPERRA 211
           GS      +     A  + VE    ++ PPP   A
Sbjct: 174 GSTSNYRAMQQASWAQGAVVENGAAYVQPPPHSAA 208

Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
154720967	220	SOC1-like protein 1 [Citrus sinensis]	1.0	1.0	1.0	1e-124
225453843	218	PREDICTED: MADS-box protein SOC1 [Vitis	0.977	0.986	0.737	5e-83
444230588	215	SOC1 [Prunus salicina]	0.963	0.986	0.759	8e-83
109627813	220	MADS box transcription factor 5 [Populus	0.986	0.986	0.721	9e-83
226291977	214	SOC1 [Prunus armeniaca] gi|444230590|gb|	0.959	0.985	0.748	1e-82
346214851	214	SOC1-like protein [Prunus mume]	0.959	0.985	0.753	1e-82
31295609	220	MADS-box protein PTM5 [Populus tremuloid	0.986	0.986	0.717	2e-82
269116072	218	suppressor of overexpression of CO 1 [Vi	0.977	0.986	0.732	5e-82
224130078	219	MIKC mads-box transcription factor PTM5	0.981	0.986	0.713	2e-81
346214861	221	SOC1-like protein [Spiraea cantoniensis]	0.968	0.963	0.728	6e-81

>gi|154720967|gb|ABS84659.1| SOC1-like protein 1 [Citrus sinensis]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60

Query: 61  SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
           SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT
Sbjct: 61  SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120

Query: 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 180
           LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK
Sbjct: 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 180

Query: 181 EQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 220
           EQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Sbjct: 181 EQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 220

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453843|ref|XP_002277773.1| PREDICTED: MADS-box protein SOC1 [Vitis vinifera] gi|95116634|gb|ABF56527.1| MADS-box protein [Vitis vinifera] gi|296089122|emb|CBI38825.3| unnamed protein product [Vitis vinifera]

 Score =  313 bits (801), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 160/217 (73%), Positives = 181/217 (83%), Gaps = 2/217 (0%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRRNGL KKAFELSVLCDAEVA+IIFSPRGKL EF+SS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLFKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SMQETIERYLKHTKDTR-NKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
           SMQETIERY +HTKD   N  + TE NMQHLKHEAANM KKIELLE+SKRKLLGEGL SC
Sbjct: 61  SMQETIERYQRHTKDVHTNNYKTTEHNMQHLKHEAANMAKKIELLEISKRKLLGEGLGSC 120

Query: 120 TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGS 179
           ++EELQQIE+QLE+SVS+IRARKNQVF EQI QLKEK K L AEN  L EKCG++ +Q  
Sbjct: 121 SIEELQQIEQQLERSVSSIRARKNQVFKEQIEQLKEKEKALAAENAMLCEKCGVQPYQAP 180

Query: 180 KEQPENLTNDDGASTSDVETELFIGPPPERRARRLAI 216
            ++ E L + + +  SDV T+LFIG  PE RA+RL +
Sbjct: 181 NQENETLPSAERSQNSDVSTDLFIG-LPEGRAKRLLL 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444230588|gb|AGD88523.1| SOC1 [Prunus salicina]

 Score =  312 bits (799), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 164/216 (75%), Positives = 183/216 (84%), Gaps = 4/216 (1%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRR+GLLKKAFELSVLCDAEVA+IIFSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SMQETIERYLKHTKD--TRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLAS 118
           SMQ TIERY KH KD  T NK   T+QNMQHLK E+++M+K+IELLEVSKRKLLGEGL S
Sbjct: 61  SMQTTIERYQKHAKDNHTNNKPVSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGEGLGS 120

Query: 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-MENWQ 177
           CT+EELQ+IE+QLE+SVSN+RARK QVF EQI QLKEKGK L AEN RL EKCG ++  Q
Sbjct: 121 CTIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLKEKGKALAAENERLIEKCGRIQPRQ 180

Query: 178 GSKEQPENLTNDDGASTSDVETELFIGPPPERRARR 213
            S EQ ENL   + + +SDVETELFIG  PERR +R
Sbjct: 181 ASNEQRENLAYIESSPSSDVETELFIG-LPERRMKR 215

Source: Prunus salicina

Species: Prunus salicina

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109627813|gb|ABG34340.1| MADS box transcription factor 5 [Populus tomentosa]

 Score =  311 bits (798), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 161/223 (72%), Positives = 182/223 (81%), Gaps = 6/223 (2%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASS 60

Query: 61  SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
           SMQETIERY +H K+    +QP EQNM  LK EAA+M+KKIE LEVSKRKLLGE L SCT
Sbjct: 61  SMQETIERYRRHVKENNTNKQPVEQNMLQLKEEAASMIKKIEHLEVSKRKLLGECLGSCT 120

Query: 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 180
           +EELQQIE QLE+SVS IRARKNQVF EQI  LK+K K+L AENTRL ++CG ++W  S 
Sbjct: 121 IEELQQIEHQLERSVSTIRARKNQVFKEQIELLKQKEKLLAAENTRLSDECGAQSWPVSW 180

Query: 181 EQPENLTND---DGASTSDVETELFIGPPPERRARRLAIPPQN 220
           EQ ++L  +   + +S SDVETELFIGPP  R  R   IPP+N
Sbjct: 181 EQRDDLPREEQRESSSISDVETELFIGPPETRTKR---IPPRN 220

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226291977|gb|ACO40488.1| SOC1 [Prunus armeniaca] gi|444230590|gb|AGD88524.1| SOC1 [Prunus armeniaca]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/215 (74%), Positives = 182/215 (84%), Gaps = 4/215 (1%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRR+GLLKKAFELSVLCDAEVA+IIFSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SMQETIERYLKHTKD--TRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLAS 118
           SMQ TIERY KHTKD  T NK   T+QNMQHLK E+++M+K+IE LE+SKRKLLGEGL S
Sbjct: 61  SMQTTIERYQKHTKDNLTNNKSVSTDQNMQHLKQESSSMMKQIEFLEISKRKLLGEGLGS 120

Query: 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-MENWQ 177
           C++EELQ+IE+QLE+SVSN+RARK QVF EQI QL+EKGK L AEN RL EKCG ++  Q
Sbjct: 121 CSIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLREKGKALAAENERLIEKCGRIQPRQ 180

Query: 178 GSKEQPENLTNDDGASTSDVETELFIGPPPERRAR 212
            S EQ ENL   + + +SDVETELFIG  PERR R
Sbjct: 181 ASNEQRENLAYTESSPSSDVETELFIG-LPERRKR 214

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346214851|gb|AEO20229.1| SOC1-like protein [Prunus mume]

 Score =  311 bits (796), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/215 (75%), Positives = 183/215 (85%), Gaps = 4/215 (1%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRR+GLLKKAFELSVLCDAEVA+IIFSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SMQETIERYLKHTKD--TRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLAS 118
           SMQ TIERY KHTKD  T NK   T+QNMQHLK E+++M+K+IELLEVSKRKLLGEGL S
Sbjct: 61  SMQTTIERYQKHTKDNLTNNKSVSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGEGLGS 120

Query: 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-MENWQ 177
           C++EELQ+IE+QLE+SVSN+RARK QVF EQI QL+EKGK L AEN +L EKCG ++  Q
Sbjct: 121 CSIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLREKGKALAAENEKLIEKCGRIQPRQ 180

Query: 178 GSKEQPENLTNDDGASTSDVETELFIGPPPERRAR 212
            S EQ ENL   + + +SDVETELFIG  PERR R
Sbjct: 181 ASNEQRENLAFTESSPSSDVETELFIG-LPERRKR 214

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|31295609|gb|AAP46287.1|AF377868_1 MADS-box protein PTM5 [Populus tremuloides]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/223 (71%), Positives = 182/223 (81%), Gaps = 6/223 (2%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASS 60

Query: 61  SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
           SMQETIERY +H K+    +QP EQNM  LK EAA+M+KKIE LEVSKRKLLGE L SCT
Sbjct: 61  SMQETIERYRRHVKENNTNKQPVEQNMLQLKEEAASMIKKIEHLEVSKRKLLGECLGSCT 120

Query: 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 180
           +EELQQIE+QLE+SVS IRARKNQVF EQI  LK+K K+L AEN RL ++CG ++W  S 
Sbjct: 121 IEELQQIEQQLERSVSTIRARKNQVFKEQIELLKQKEKLLAAENARLSDECGAQSWPVSW 180

Query: 181 EQPENLTND---DGASTSDVETELFIGPPPERRARRLAIPPQN 220
           EQ ++L  +   + +S SDVETELFIGPP  R  R   IPP+N
Sbjct: 181 EQRDDLPREEQRESSSISDVETELFIGPPETRTKR---IPPRN 220

Source: Populus tremuloides

Species: Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269116072|gb|ACZ26527.1| suppressor of overexpression of CO 1 [Vitis vinifera]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 159/217 (73%), Positives = 180/217 (82%), Gaps = 2/217 (0%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRRNGL KKAFELSVLCDAEVA+IIFSPRGKL EF+SS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLFKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  SMQETIERYLKHTKDTR-NKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
           SMQETIERY +HTKD   N  + TE NMQ LKHEAANM KKIELLE+SKRKLLGEGL SC
Sbjct: 61  SMQETIERYQRHTKDVHTNNYKTTEHNMQQLKHEAANMAKKIELLEISKRKLLGEGLGSC 120

Query: 120 TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGS 179
           ++EELQQIE+QLE+SVS+IRARKNQVF EQI QLKEK K L AEN  L EKCG++ +Q  
Sbjct: 121 SIEELQQIEQQLERSVSSIRARKNQVFKEQIEQLKEKEKALAAENAMLCEKCGVQPYQAP 180

Query: 180 KEQPENLTNDDGASTSDVETELFIGPPPERRARRLAI 216
            ++ E L + + +  SDV T+LFIG  PE RA+RL +
Sbjct: 181 NQENETLPSAERSQNSDVSTDLFIG-LPEGRAKRLLL 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130078|ref|XP_002320747.1| MIKC mads-box transcription factor PTM5 [Populus trichocarpa] gi|222861520|gb|EEE99062.1| MIKC mads-box transcription factor PTM5 [Populus trichocarpa]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 159/223 (71%), Positives = 182/223 (81%), Gaps = 7/223 (3%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRGKL EFAS+
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAST 60

Query: 61  SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
           SMQETIERY +H K+    +QP EQNM  LK EAA+M+KKIE LEVSKRKLLGE L SCT
Sbjct: 61  SMQETIERYRRHVKENNTNKQPVEQNMLQLKEEAASMIKKIEHLEVSKRKLLGECLGSCT 120

Query: 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 180
           +EELQQIE+QLE+SVS IRARKNQVF EQI  L++K K+L AEN RL ++CG ++W  S+
Sbjct: 121 VEELQQIEQQLERSVSTIRARKNQVFKEQIELLRQKEKLLAAENARLSDECGAQSWPVSR 180

Query: 181 EQPENLTNDD---GASTSDVETELFIGPPPERRARRLAIPPQN 220
           EQ  +L  +D    +S SDVETELFIGPP  R  R   IPP+N
Sbjct: 181 EQ-RDLPREDLRESSSISDVETELFIGPPETRTKR---IPPRN 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346214861|gb|AEO20234.1| SOC1-like protein [Spiraea cantoniensis]

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 161/221 (72%), Positives = 182/221 (82%), Gaps = 8/221 (3%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRR+GLLKKAFELSVLCDAEVA+IIFSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  SMQETIERYLKHTKD--TRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLAS 118
           SMQ TIERY KH KD  T NK   +EQN QHL+ EA+ M+K+IE+LE SKRKLLGEGLAS
Sbjct: 61  SMQTTIERYQKHAKDNQTNNKSVASEQNTQHLRQEASRMMKQIEILEGSKRKLLGEGLAS 120

Query: 119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG----ME 174
           C+LEELQ++E QLEKSV+++RARK+QVF E I QLKEK K+L AEN RL EKCG    M+
Sbjct: 121 CSLEELQELEHQLEKSVTSVRARKDQVFKELIEQLKEKEKMLAAENVRLMEKCGSIQQMQ 180

Query: 175 NW--QGSKEQPENLTNDDGASTSDVETELFIGPPPERRARR 213
               Q S EQ E+L   D + +SDVETELFIG PPERRA+R
Sbjct: 181 AGAPQTSNEQREHLPYADSSPSSDVETELFIGMPPERRAKR 221

Source: Spiraea cantoniensis

Species: Spiraea cantoniensis

Genus: Spiraea

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2005522	214	AGL20 "AT2G45660" [Arabidopsis	0.954	0.981	0.624	4.2e-63
UNIPROTKB|Q9ATE9	216	FBP20 "MADS-box transcription	0.959	0.976	0.631	8.1e-60
UNIPROTKB|Q9ATE3	215	FBP28 "MADS-box transcription	0.968	0.990	0.612	1.9e-58
TAIR|locus:505006709	210	AGL42 "AGAMOUS-like 42" [Arabi	0.927	0.971	0.533	1.3e-50
TAIR|locus:2127213	219	AGL19 "AGAMOUS-like 19" [Arabi	0.986	0.990	0.513	2.5e-49
TAIR|locus:2137070	221	AGL14 "AGAMOUS-like 14" [Arabi	0.972	0.968	0.506	4.2e-47
TAIR|locus:2165386	211	AGL72 "AGAMOUS-like 72" [Arabi	0.922	0.962	0.451	2.9e-39
UNIPROTKB|Q0D4T4	249	MADS18 "MADS-box transcription	0.940	0.831	0.403	2e-33
UNIPROTKB|Q40882	228	fbp11 "Fbp11 protein" [Petunia	0.790	0.763	0.434	5.2e-33
TAIR|locus:2140578	256	STK "AT4G09960" [Arabidopsis t	0.827	0.710	0.415	6.7e-33

TAIR|locus:2005522 AGL20 "AT2G45660" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 133/213 (62%), Positives = 161/213 (75%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGKTQM+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV++IIFSP+GKL EFASS
Sbjct:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query:    61 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
             +MQ+TI+RYL+HTKD  + +  +E+NMQHLK+EAANM+KKIE LE SKRKLLGEG+ +C+
Sbjct:    61 NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCS 120

Query:   121 XXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM---ENWQ 177
                         KSV  IRARK QVF EQI QLK+K K L AEN +L EK G    E W 
Sbjct:   121 IEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWS 180

Query:   178 GSKEQPENLTNDDGASTSDVETELFIGPPPERR 210
                ++     +++ + +S+VET+LFIG P   R
Sbjct:   181 NKNQESTGRGDEESSPSSEVETQLFIGLPCSSR 213

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q9ATE9 FBP20 "MADS-box transcription factor FBP20" [Petunia x hybrida (taxid:4102)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 137/217 (63%), Positives = 154/217 (70%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDA+V ++IFSPRGK  EF+SS
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVGLVIFSPRGKQYEFSSS 60

Query:    61 SMQETIERYLKHTKD-TRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
             SMQE IERY  HTKD  + + Q  EQN+QH   E A ++KKIE LE SKRKLLGEGL SC
Sbjct:    61 SMQEIIERYKGHTKDKVQTENQAGEQNLQH---ETAGLMKKIEFLETSKRKLLGEGLGSC 117

Query:   120 TXXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-MENWQG 178
             T            +SVS IRARK QVF EQI +L EK K L AEN  L EK G ++  Q 
Sbjct:   118 TLEELQKIEKQLERSVSIIRARKMQVFKEQIEKLNEKEKALAAENAMLREKFGGLQQRQA 177

Query:   179 SKEQPEN-LTNDDGASTSDVETELFIGPPPERRARRL 214
             S  + E  +   +G+  SDVETELFIGPP  R   RL
Sbjct:   178 SSGEKEGEVVCTEGSDKSDVETELFIGPPECRIRHRL 214

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATE3 FBP28 "MADS-box transcription factor FBP28" [Petunia x hybrida (taxid:4102)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 136/222 (61%), Positives = 163/222 (73%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV++IIFS RGKL EF+SS
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSTRGKLYEFSSS 60

Query:    61 SMQETIERYLKHTKDTRNKQQPTEQN-MQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
             SMQE IERY +H++D + ++   EQN MQ+LK +AA+++KKIE+LE SKRKLLGE L SC
Sbjct:    61 SMQEIIERYRRHSEDVQGEKPAVEQNNMQNLKLDAASLMKKIEILETSKRKLLGEDLGSC 120

Query:   120 TXXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-MENWQG 178
             +            +S+S IRARK +VF EQI +LK   KVL  EN  L EKCG +E  Q 
Sbjct:   121 SLEELQQIEKQLERSISTIRARKMEVFREQIERLKGNVKVLATENAMLWEKCGDLEMQQT 180

Query:   179 SKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 220
             S  +  ++   +G+  SDVETELFIG P E R +R   P QN
Sbjct:   181 SGGEDLSI---EGSEKSDVETELFIGLP-ECRTKR---PLQN 215

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:505006709 AGL42 "AGAMOUS-like 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 111/208 (53%), Positives = 146/208 (70%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGK +M++IENATSRQVTFSKRRNGLLKKA+ELSVLCDA++++IIFS RG+L EF+SS
Sbjct:     1 MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query:    61 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
              MQ+TIERY K+TKD       ++ ++Q LK EA++M+ KIELLE  KRKLLG+G+ASC+
Sbjct:    61 DMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLGQGIASCS 120

Query:   121 XXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 180
                         +S+  +R RK Q+F EQ+ +LK K K L  EN +L +K  +  W+GS 
Sbjct:   121 LEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVINPWRGSS 180

Query:   181 --EQPENLTNDDGASTSDVETELFIGPP 206
               +Q E     D     +VET+LFIG P
Sbjct:   181 TDQQQEKYKVID--LNLEVETDLFIGLP 206

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009838 "abscission" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0080187 "floral organ senescence" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2127213 AGL19 "AGAMOUS-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 114/222 (51%), Positives = 150/222 (67%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGKT+M+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA++IFSPR KL EF+SS
Sbjct:     1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query:    61 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
             S+  TIERY +  K+  N  +  + N Q  + E + + KKIE LE+SKRKLLGEG+ +C+
Sbjct:    61 SIAATIERYQRRIKEIGNNHKRND-NSQQARDETSGLTKKIEQLEISKRKLLGEGIDACS 119

Query:   121 XXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEK-CGMENWQGS 179
                         +S+S IRA+K Q+  E+I +LK + + L  EN  L+EK  GM     +
Sbjct:   120 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIA 179

Query:   180 KEQPENLTNDDGASTS-DVETELFIGPPPERRARRLAIPPQN 220
               Q    +++     + +VET LFIGPP  R++++   PPQN
Sbjct:   180 SSQSTLSSSEVNIDDNMEVETGLFIGPPETRQSKKF--PPQN 219

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA;IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2137070 AGL14 "AGAMOUS-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 115/227 (50%), Positives = 147/227 (64%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGKT+M+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+IIFSPRGKL EF+SS
Sbjct:     1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query:    61 S-MQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
             S + +T+ERY K  +D  +  +  + N Q  K E   + +KIE LE+S RK++GEGL + 
Sbjct:    61 SSIPKTVERYQKRIQDLGSNHKRND-NSQQSKDETYGLARKIEHLEISTRKMMGEGLDAS 119

Query:   120 TXXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQG- 178
             +            +S+  IRA+K Q+  E+  +LKEK + L AEN  L EKC M+  +G 
Sbjct:   120 SIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQG-RGI 178

Query:   179 -----SKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 220
                  S      L  DD  +  +V T+LFIGPP  R  ++   PP N
Sbjct:   179 IGRISSSSSTSELDIDD--NEMEVVTDLFIGPPETRHFKKF--PPSN 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2165386 AGL72 "AGAMOUS-like 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 93/206 (45%), Positives = 133/206 (64%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGK ++++IEN TSRQVTFSKRR+GL KKA ELSVLCDA+VA +IFS +G+L EFASS
Sbjct:     1 MVRGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKGRLYEFASS 60

Query:    61 SMQETIERYLKHTKDTRNKQ-QPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
              ++ TI+RY ++ ++    +  P EQ +Q LK E   MVKKIE+LEV  RK++G+ L SC
Sbjct:    61 DIRNTIKRYAEYKREYFVAETHPIEQYVQGLKKEMVTMVKKIEVLEVHNRKMMGQSLDSC 120

Query:   120 TXXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE-EKCGMENWQG 178
             +            KS+  +R RK +++ +++ +LK K + L+ E  RL  +K    +   
Sbjct:   121 SVKELSEIATQIEKSLHMVRLRKAKLYEDELQKLKAKERELKDERVRLSLKKTIYTHLCQ 180

Query:   179 SKEQPENLTNDDGASTSDVETELFIG 204
               E+P  + +       DVET+LFIG
Sbjct:   181 VGERPMGMPSGS-KEKEDVETDLFIG 205

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|Q0D4T4 MADS18 "MADS-box transcription factor 18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 84/208 (40%), Positives = 126/208 (60%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS- 59
             M RG  Q+RRIEN  +RQVTFSKRRNGLLKKA E+SVLCDA+VA+I+FS +GKL EF+S 
Sbjct:     1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSH 60

Query:    60 SSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 119
             SSM+  +ERY +++ D R   +P  ++ ++   E   +  K++ L+ S+R+LLGE L + 
Sbjct:    61 SSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTL 120

Query:   120 TXXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGS 179
             T             S+ +IR++KNQ+  E I++L++K K L+ +N  L++    E  + +
Sbjct:   121 TIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNN 180

Query:   180 KEQPENLTNDDGASTSDVETELFIGPPP 207
                  N    +GA+ S         P P
Sbjct:   181 AIINTNREEQNGATPSTSSPTPVTAPDP 208

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40882 fbp11 "Fbp11 protein" [Petunia x hybrida (taxid:4102)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 76/175 (43%), Positives = 116/175 (66%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             M RGK +++RIEN T+RQVTF KRRNGLLKKA+ELSVLCDAE+A+I+FS RG++ E+A++
Sbjct:     1 MGRGKIEIKRIENNTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSTRGRVYEYANN 60

Query:    61 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
             +++ TIERY K T +T N     E N Q  + E+  + ++I+LL+ + R L+GEGL++  
Sbjct:    61 NIKGTIERYKKATAETSNACTTQELNAQFYQQESKKLRQQIQLLQNTNRHLVGEGLSALN 120

Query:   121 XXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMEN 175
                         + ++ IR++K+++   +   L+++   LE ENT L  K   EN
Sbjct:   121 VRELKQLENRLERGITRIRSKKHEMILAETENLQKREIQLEQENTFLRSKIA-EN 174

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2140578 STK "AT4G09960" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 76/183 (41%), Positives = 119/183 (65%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             M RGK +++RIEN+T+RQVTF KRRNGLLKKA+ELSVLCDAEVA+I+FS RG+L E+A++
Sbjct:    27 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 86

Query:    61 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120
             +++ TIERY K   D+ N     E N  + + E+A + ++I+ ++ S R L+G+ L+S +
Sbjct:    87 NIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLS 146

Query:   121 XXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-MENWQGS 179
                         K++S IR++K+++   +I   +++   L+ EN  L  K   +E +Q  
Sbjct:   147 VKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYLRTKVAEVERYQQH 206

Query:   180 KEQ 182
               Q
Sbjct:   207 HHQ 209

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048440 "carpel development" evidence=IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0048316 "seed development" evidence=IGI

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XJ60	MAD50_ORYSJ	No assigned EC number	0.5429	0.9363	0.8956	yes	no
O64645	SOC1_ARATH	No assigned EC number	0.6713	0.9545	0.9813	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	MADS8	SubName- Full=MADS-box protein (Chromosome chr15 scaffold_37, whole genome shotgun sequence); (218 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	TFL1	SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (173 aa)							•		0.483
	PHYA	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_27, whole genome shot [...] (1124 aa)							•		0.483
	FT	SubName- Full=Flowering locus T-like protein (FT-like protein) (Putative uncharacterized protei [...] (174 aa)							•		0.483
	PHYB	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (1130 aa)							•		0.481
	GSVIVG00015048001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (359 aa)							•		0.481
	GSVIVG00038466001	SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (762 aa)							•		0.480

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	6e-44
smart00432	59	smart00432, MADS, MADS domain	5e-32
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	2e-31
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	4e-27
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	7e-23
pfam01486	100	pfam01486, K-box, K-box region	1e-22
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	6e-09
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.003

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  141 bits (358), Expect = 6e-44
 Identities = 52/73 (71%), Positives = 62/73 (84%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          RGK +++RIEN+T+RQVTFSKRRNGLLKKA ELSVLCDAEVA+IIFS  GKL EF+S SM
Sbjct: 2  RGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSM 61

Query: 63 QETIERYLKHTKD 75
          ++ IERY K +  
Sbjct: 62 EKIIERYQKTSGS 74

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  110 bits (278), Expect = 5e-32
 Identities = 44/58 (75%), Positives = 50/58 (86%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          R K +++RIEN T+RQVTFSKRRNGL KKA ELSVLCDAEVA+I+FSP GKL EFAS 
Sbjct: 2  RRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  108 bits (273), Expect = 2e-31
 Identities = 47/58 (81%), Positives = 51/58 (87%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          RGK +++RIEN TSRQVTFSKRRNGL KKA ELSVLCDAEVAVI+FSP GKL EF SS
Sbjct: 2  RGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 98.9 bits (247), Expect = 4e-27
 Identities = 42/78 (53%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K +++RIEN   R VTFSKRR GL KKA ELS LC AEVAVI++SP GKL  F  SS 
Sbjct: 2  RKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE 61

Query: 63 -QETIERYLKHTKDTRNK 79
           +  I R+   +   R K
Sbjct: 62 VEGVISRFEVLSALERKK 79

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 87.1 bits (216), Expect = 7e-23
 Identities = 39/51 (76%), Positives = 45/51 (88%)

Query: 9  RRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS 59
          +RIEN ++RQVTFSKRRNG+ KKA ELSVLCDAEVAVIIFS  GKL E++S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 87.6 bits (218), Expect = 1e-22
 Identities = 38/87 (43%), Positives = 60/87 (68%)

Query: 84  EQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKN 143
           E   ++L+ EAA + K+ E L+  +R LLGE L S +L+ELQQ+E+QLE  + +IR+RKN
Sbjct: 11  ESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKN 70

Query: 144 QVFNEQIAQLKEKGKVLEAENTRLEEK 170
           ++   QI +L++K + L+ EN  L +K
Sbjct: 71  ELLLNQIEELQKKERELQEENRNLRQK 97

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 55.0 bits (132), Expect = 6e-09
 Identities = 26/66 (39%), Positives = 39/66 (59%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           +   K  +  I N T R VTFSKR++G+ KKAFELSVL   EV +++ S  G +  F + 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  SMQETI 66
            ++  +
Sbjct: 141 KLESVV 146

Length = 412

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 15/111 (13%)

Query: 68  RYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQI 127
           RYL  T   R +    +Q +  L+ E A + +++  L+   ++L  E      L  L+  
Sbjct: 56  RYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQE------LSTLEAE 109

Query: 128 ERQLEKSVSNIR---------ARKNQVFNEQIAQLKEKGKVLEAENTRLEE 169
             +L+K ++ I+           +N+   E++A+LK++ + LEAEN RL+E
Sbjct: 110 LERLQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQE 160

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.94
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.83
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.81
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.51
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	95.07
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	87.82
PRK04098	158	sec-independent translocase; Provisional	87.38
PRK15422	79	septal ring assembly protein ZapB; Provisional	87.04
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	85.76
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	85.76
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	85.43
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	85.09
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	84.02
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	82.74
KOG4797	123	consensus Transcriptional regulator [Transcription	81.05

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=1.2e-39  Score=265.70  Aligned_cols=161  Identities=49%  Similarity=0.685  Sum_probs=130.4

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchh--hHHHHHHhhcccccccC
Q 027658            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS--MQETIERYLKHTKDTRN   78 (220)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s--~~~IleRY~~~~~~~~~   78 (220)
                      |||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|++++  |.+|++||.........
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999985  99999999987665543


Q ss_pred             CCCCchhh-H-------------------HHHHHHHHhHHHHHHHHHHH---hhhhhCCCCCCCCH-HHHHHHHHHHHHH
Q 027658           79 KQQPTEQN-M-------------------QHLKHEAANMVKKIELLEVS---KRKLLGEGLASCTL-EELQQIERQLEKS  134 (220)
Q Consensus        79 ~~~~~~~~-~-------------------q~l~~e~~kL~~kie~le~~---~r~l~Ge~L~~Ls~-~EL~~LE~~Le~~  134 (220)
                      ........ .                   +.+......+....+.+...   .+++.|+++.++++ .+|..++.+|+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            33221110 0                   11334455556666665543   78899999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 027658          135 VSNIRARKNQVFNEQIA-QLKEKGKVLE  161 (220)
Q Consensus       135 L~~IR~RK~~ll~~qi~-~lk~ke~~l~  161 (220)
                      +..+|..+...+.+++. .++.++..+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKEKSLE  188 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccchhcc
Confidence            99999999888887775 4444444333

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=6.4e-35  Score=203.44  Aligned_cols=75  Identities=69%  Similarity=0.992  Sum_probs=72.5

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhcccccc
Q 027658            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDT   76 (220)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~~~~~   76 (220)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|+||++++||+||.+.++..
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~~~   75 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSGSS   75 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987653

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=9e-32  Score=190.29  Aligned_cols=77  Identities=53%  Similarity=0.737  Sum_probs=72.4

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchh-hHHHHHHhhcccccccC
Q 027658            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSS-MQETIERYLKHTKDTRN   78 (220)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s-~~~IleRY~~~~~~~~~   78 (220)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+.|++++ +..+|++|...+.....
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   78 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERK   78 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhh
Confidence            899999999999999999999999999999999999999999999999999999988875 99999999988765543

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=4.6e-31  Score=173.93  Aligned_cols=59  Identities=75%  Similarity=1.058  Sum_probs=57.9

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccch
Q 027658            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (220)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~   60 (220)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999886

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=2.5e-30  Score=170.54  Aligned_cols=59  Identities=80%  Similarity=1.078  Sum_probs=57.7

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccch
Q 027658            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (220)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~   60 (220)
                      ||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.94  E-value=8.3e-29  Score=158.06  Aligned_cols=51  Identities=63%  Similarity=0.991  Sum_probs=47.1

Q ss_pred             eeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccc
Q 027658            9 RRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS   59 (220)
Q Consensus         9 k~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s   59 (220)
                      |+|+|++.|++||+|||.||||||.|||+||||+||+|||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999987

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.83  E-value=1.4e-19  Score=132.57  Aligned_cols=89  Identities=42%  Similarity=0.610  Sum_probs=86.4

Q ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658           84 EQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAE  163 (220)
Q Consensus        84 ~~~~q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~ee  163 (220)
                      ..+.+.|+.++.+|+.+++.|+...|+++|++|++||++||+.||.+|+.+|.+||+||.+++.++|+.|++|+..|.++
T Consensus        11 ~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e   90 (100)
T PF01486_consen   11 DSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE   90 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 027658          164 NTRLEEKCG  172 (220)
Q Consensus       164 N~~L~~~~~  172 (220)
                      |..|+.++.
T Consensus        91 n~~L~~~~~   99 (100)
T PF01486_consen   91 NNQLRQKIE   99 (100)
T ss_pred             HHHHHHHhc
Confidence            999999876

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.81  E-value=4.2e-21  Score=160.72  Aligned_cols=74  Identities=38%  Similarity=0.566  Sum_probs=65.9

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhH---------HHHHHhhcc
Q 027658            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQ---------ETIERYLKH   72 (220)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~---------~IleRY~~~   72 (220)
                      ||.||+|++|+|+..|.|||||||.|+||||+|||||.|.+|-|+|.|.+|-+|.|++|.++         ++|.-..+.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~  142 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA  142 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence            79999999999999999999999999999999999999999999999999999999997544         455555555


Q ss_pred             ccc
Q 027658           73 TKD   75 (220)
Q Consensus        73 ~~~   75 (220)
                      +..
T Consensus       143 pd~  145 (338)
T KOG0015|consen  143 PDT  145 (338)
T ss_pred             CCC
Confidence            543

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.51  E-value=4.8e-15  Score=129.70  Aligned_cols=67  Identities=39%  Similarity=0.618  Sum_probs=63.0

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHH
Q 027658            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIE   67 (220)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~Ile   67 (220)
                      |||+|+.|.+|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|+++.|++|..+.|+.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~  147 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK  147 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence            7999999999999999999999999999999999999999999999999999999999986555543

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=95.07  E-value=0.23  Score=33.93  Aligned_cols=49  Identities=33%  Similarity=0.503  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658          119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG  172 (220)
Q Consensus       119 Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~~~~~  172 (220)
                      +|++.|.+||..+..++..|     .++..+++.|+.+...|.++|..|.....
T Consensus         1 M~~E~l~~LE~ki~~aveti-----~~Lq~e~eeLke~n~~L~~e~~~L~~en~   49 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETI-----ALLQMENEELKEKNNELKEENEELKEENE   49 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            47889999999999999998     45667777888876666565555555443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=87.82  E-value=0.13  Score=27.18  Aligned_cols=14  Identities=36%  Similarity=0.707  Sum_probs=11.3

Q ss_pred             eeeeeeCCCCcccc
Q 027658           43 VAVIIFSPRGKLSE   56 (220)
Q Consensus        43 valivfs~~gkl~~   56 (220)
                      ..+.+|||.|++|.
T Consensus         3 ~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    3 RSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSTTSBBTTSSBHH
T ss_pred             CCceeECCCCeEEe
Confidence            45678999999985

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PRK04098 sec-independent translocase; Provisional

Probab=87.38  E-value=0.37  Score=37.91  Aligned_cols=82  Identities=26%  Similarity=0.348  Sum_probs=40.6

Q ss_pred             ceeeeeeCCCCccccccchhhHHHHHHhhcccccccCCCCCchhhHHHHHHHHHhHHHHHHHHHHHhhhhhCCCCCCCCH
Q 027658           42 EVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTL  121 (220)
Q Consensus        42 ~valivfs~~gkl~~~~s~s~~~IleRY~~~~~~~~~~~~~~~~~~q~l~~e~~kL~~kie~le~~~r~l~Ge~L~~Ls~  121 (220)
                      =||||||+|. |+++.+- .+-..+..|++........-. .+-.+..++.++.+.+..++......|.       .+++
T Consensus        14 vVaLlvfGP~-KLP~~~r-~lGk~ir~~K~~~~~~k~~l~-~Ei~~~elk~e~~k~k~~l~~~~~~l~~-------~~~~   83 (158)
T PRK04098         14 VVAIIFLGPD-KLPQAMV-DIAKFFKAVKKTINDAKSTLD-KEINIEEIKEEALKYKKEFESAVESLKK-------KLKF   83 (158)
T ss_pred             HHHHhhcCch-HHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHh-------ccCh
Confidence            3899999994 8776644 344445555544322111000 0112334555555555555554443331       2566


Q ss_pred             HHHHHHHHHHHH
Q 027658          122 EELQQIERQLEK  133 (220)
Q Consensus       122 ~EL~~LE~~Le~  133 (220)
                      ++|.++-.-+..
T Consensus        84 eel~~~~~~~~~   95 (158)
T PRK04098         84 EELDDLKITAEN   95 (158)
T ss_pred             HHHHHHhhhhhh
Confidence            666666443333

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=87.04  E-value=5.3  Score=27.63  Aligned_cols=43  Identities=26%  Similarity=0.488  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658          119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR  166 (220)
Q Consensus       119 Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~  166 (220)
                      +|++=|.+||..+..++..|     .++.=+|++||.|...|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777899999999999888     67777888888876666664433

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=85.76  E-value=8  Score=33.98  Aligned_cols=60  Identities=28%  Similarity=0.468  Sum_probs=42.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658          114 EGLASCTLEELQQIERQLEKSVSNIRARKNQVFN--EQIAQLKEKGKVLEAENTRLEEKCGM  173 (220)
Q Consensus       114 e~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~--~qi~~lk~ke~~l~eeN~~L~~~~~~  173 (220)
                      ..++.++.++|..+...|...-..|..+|..+-.  .+.+.+..+...+.++-..+...+..
T Consensus       201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e  262 (325)
T PF08317_consen  201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE  262 (325)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4588999999999999999998888877766543  45555555555555555555555443

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.76  E-value=7.9  Score=26.16  Aligned_cols=45  Identities=24%  Similarity=0.470  Sum_probs=30.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658          119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE  168 (220)
Q Consensus       119 Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~L~  168 (220)
                      +|++=|..||..+..++..|     .|+.=+|++||.|...|..|-..++
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q   45 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQ   45 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHH
Confidence            46677788888888887776     5666677777777665554444333

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=85.43  E-value=2.4  Score=27.54  Aligned_cols=30  Identities=40%  Similarity=0.582  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658          144 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM  173 (220)
Q Consensus       144 ~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~  173 (220)
                      +.+.++|..|..+...|+.||..|+..+..
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~~p   46 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQNASP   46 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            567888999999999999999999875543

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=85.09  E-value=1.5  Score=32.31  Aligned_cols=25  Identities=36%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Q 027658          149 QIAQLKEKGKVLEAENTRLEEKCGM  173 (220)
Q Consensus       149 qi~~lk~ke~~l~eeN~~L~~~~~~  173 (220)
                      ++..+|++.+.|+|||+.|+-|++.
T Consensus        73 e~~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          73 EVLRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677888899999999988774

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=84.02  E-value=10  Score=33.25  Aligned_cols=60  Identities=20%  Similarity=0.361  Sum_probs=40.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027658          113 GEGLASCTLEELQQIERQLEKSVSNIRARKNQVFN--EQIAQLKEKGKVLEAENTRLEEKCG  172 (220)
Q Consensus       113 Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~--~qi~~lk~ke~~l~eeN~~L~~~~~  172 (220)
                      -++++.|+.++|..+...|......|...+..+-.  ++...+..+.....++-..+...+.
T Consensus       195 ~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~  256 (312)
T smart00787      195 EDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA  256 (312)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999888777666433  4555555544444444444444444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=82.74  E-value=3.1  Score=27.25  Aligned_cols=32  Identities=28%  Similarity=0.417  Sum_probs=26.2

Q ss_pred             hhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 027658          110 KLLGEGLASCTLEELQQIERQLEKSVSNIRAR  141 (220)
Q Consensus       110 ~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~IR~R  141 (220)
                      +..|++|+.||++||..--..|+.-+.++++-
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~   43 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA   43 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            56799999999999999887777777776653

The function of this family is unknown.

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=81.05  E-value=9.3  Score=28.08  Aligned_cols=26  Identities=42%  Similarity=0.644  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658          144 QVFNEQIAQLKEKGKVLEAENTRLEE  169 (220)
Q Consensus       144 ~ll~~qi~~lk~ke~~l~eeN~~L~~  169 (220)
                      +.+.++|..|-.+...|++||..|+.
T Consensus        70 e~Lk~qI~eL~er~~~Le~EN~lLk~   95 (123)
T KOG4797|consen   70 EVLKEQIRELEERNSALERENSLLKT   95 (123)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556666666666666667766654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	220
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		1e-15
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		2e-15
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		3e-15
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		6e-15
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		8e-15
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		1e-13
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		2e-09
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		8e-08
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		8e-08

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 53/70 (75%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 63 QETIERYLKH 72
           + + +Y ++
Sbjct: 62 DKVLLKYTEY 71

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 53/70 (75%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 63 QETIERYLKH 72
           + + +Y ++
Sbjct: 62 DKVLLKYTEY 71

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 54/73 (73%)
Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   +L ++AS+
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 SMQETIERYLKHT 73
           M   + +Y +++
Sbjct: 61 DMDRVLLKYTEYS 73

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 53/70 (75%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVL DAE+A+IIF+   KL ++AS+ M
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDM 61
Query: 63 QETIERYLKH 72
           + + +Y ++
Sbjct: 62 DKVLLKYTEY 71

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 53/71 (74%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   +L ++AS+ M
Sbjct: 2  RKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDM 61
Query: 63 QETIERYLKHT 73
             + +Y +++
Sbjct: 62 DRVLLKYTEYS 72

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61
Query: 63 QETIERY 69
           + + +Y
Sbjct: 62 DKVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K +++ IEN T R VTFSKR++G++KKAFELSVL   +V +++ S  G +  F++   
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 77
Query: 63 QETI 66
          +  +
Sbjct: 78 EPIV 81

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K +M  I+N   R  TFSKR+ G++KKA+ELS L   +V +++ S  G +  FA+  +
Sbjct: 11 RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKL 70
Query: 63 QETI 66
          Q  I
Sbjct: 71 QPMI 74

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K +M  I+N   R  TFSKR+ G++KKA+ELS L   +V +++ S  G +  FA+  +
Sbjct: 12 RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKL 71
Query: 63 QETI 66
          Q  I
Sbjct: 72 QPMI 75

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	7e-42
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-40
1hbx_A	92	SRF, serum response factor; gene regulation, trans	1e-38
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	2e-38
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-37

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  136 bits (343), Expect = 7e-42
 Identities = 36/89 (40%), Positives = 58/89 (65%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 63 QETIERYLKHTKDTRNKQQPTEQNMQHLK 91
           + + +Y ++ +   ++         + K
Sbjct: 62 DKVLLKYTEYNEPHESRTNSDIVEALNKK 90

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  131 bits (332), Expect = 2e-40
 Identities = 35/73 (47%), Positives = 54/73 (73%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 63 QETIERYLKHTKD 75
           + + +Y ++ + 
Sbjct: 62 DKVLLKYTEYNEP 74

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  128 bits (323), Expect = 1e-38
 Identities = 27/82 (32%), Positives = 40/82 (48%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
            R K +M  I+N   R  TFSKR+ G++KKA+ELS L   +V +++ S  G +  FA+ 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 SMQETIERYLKHTKDTRNKQQP 82
           +Q  I               P
Sbjct: 70 KLQPMITSETGKALIQTCLNSP 91

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  127 bits (321), Expect = 2e-38
 Identities = 28/85 (32%), Positives = 47/85 (55%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             R K +++ IEN T R VTFSKR++G++KKAFELSVL   +V +++ S  G +  F++ 
Sbjct: 16  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61  SMQETIERYLKHTKDTRNKQQPTEQ 85
             +  + +             P ++
Sbjct: 76  KFEPIVTQQEGRNLIQACLNAPDDE 100

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  124 bits (314), Expect = 2e-37
 Identities = 27/82 (32%), Positives = 40/82 (48%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
            R K +M  I+N   R  TFSKR+ G++KKA+ELS L   +V +++ S  G +  FA+ 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 SMQETIERYLKHTKDTRNKQQP 82
           +Q  I               P
Sbjct: 69 KLQPMITSETGKALIQTCLNSP 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	89.61
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	81.97
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	81.29

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=2.1e-40  Score=228.57  Aligned_cols=74  Identities=47%  Similarity=0.760  Sum_probs=70.3

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhccccc
Q 027658            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKD   75 (220)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~~~~   75 (220)
                      ||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|+.||+||+..++.
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~   74 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999987653

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=5.6e-40  Score=231.82  Aligned_cols=77  Identities=45%  Similarity=0.735  Sum_probs=74.0

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhcccccccC
Q 027658            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHTKDTRN   78 (220)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~~~~~~~   78 (220)
                      ||+||+|++|+|+++|||||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||+||+.+++....
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~   77 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHES   77 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCE
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCccccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999998766544

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=3.2e-38  Score=226.51  Aligned_cols=71  Identities=38%  Similarity=0.596  Sum_probs=69.5

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhc
Q 027658            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK   71 (220)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~   71 (220)
                      |||+||+|++|+|.++|+|||+|||.||||||+||||||||+||||||||+|++|+|+||++..||++|..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999854

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=4.4e-38  Score=222.99  Aligned_cols=70  Identities=37%  Similarity=0.521  Sum_probs=68.4

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhh
Q 027658            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYL   70 (220)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~   70 (220)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999764

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=2e-37  Score=223.74  Aligned_cols=69  Identities=38%  Similarity=0.535  Sum_probs=67.7

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHh
Q 027658            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERY   69 (220)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY   69 (220)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999973

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=89.61  E-value=2.8  Score=28.28  Aligned_cols=43  Identities=26%  Similarity=0.488  Sum_probs=33.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658          119 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR  166 (220)
Q Consensus       119 Ls~~EL~~LE~~Le~~L~~IR~RK~~ll~~qi~~lk~ke~~l~eeN~~  166 (220)
                      +|++=|.+||..+..++..|     .++.-+|+.||.+...|.++|..
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888999999999999888     56777778888877775555554

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=81.97  E-value=7.4  Score=24.45  Aligned_cols=53  Identities=23%  Similarity=0.435  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027658          117 ASCTLEELQQIERQLEKSVSNIRA--RKNQVFNEQIAQLKEKGKVLEAENTRLEE  169 (220)
Q Consensus       117 ~~Ls~~EL~~LE~~Le~~L~~IR~--RK~~ll~~qi~~lk~ke~~l~eeN~~L~~  169 (220)
                      +..++.|..++.+.|-.+=.+|..  +-+.-+.+++..++++.+.|+.||..|+.
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            457888888888777766655532  22334567888899999999999999873

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=81.29  E-value=9.2  Score=25.13  Aligned_cols=31  Identities=42%  Similarity=0.505  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027658          144 QVFNEQIAQLKEKGKVLEAENTRLEEKCGME  174 (220)
Q Consensus       144 ~ll~~qi~~lk~ke~~l~eeN~~L~~~~~~~  174 (220)
                      +.+.++|.+|-.+...|+.||..|+.-...+
T Consensus        18 evLKe~I~EL~e~~~qLE~EN~~Lk~~aspE   48 (78)
T 1dip_A           18 EILKEQIRELVEKNSQLERENTLLKTLASPE   48 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            4678899999999999999999998755543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	1e-35
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-33
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	2e-33

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (298), Expect = 1e-35
 Identities = 35/70 (50%), Positives = 53/70 (75%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+ M
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 63 QETIERYLKH 72
           + + +Y ++
Sbjct: 62 DKVLLKYTEY 71

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (285), Expect = 1e-33
 Identities = 27/80 (33%), Positives = 40/80 (50%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K +M  I+N   R  TFSKR+ G++KKA+ELS L   +V +++ S  G +  FA+  +
Sbjct: 4  RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKL 63

Query: 63 QETIERYLKHTKDTRNKQQP 82
          Q  I               P
Sbjct: 64 QPMITSETGKALIQTCLNSP 83

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (284), Expect = 2e-33
 Identities = 28/82 (34%), Positives = 46/82 (56%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSM 62
          R K +++ IEN T R VTFSKR++G++KKAFELSVL   +V +++ S  G +  F++   
Sbjct: 4  RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 63

Query: 63 QETIERYLKHTKDTRNKQQPTE 84
          +  + +             P +
Sbjct: 64 EPIVTQQEGRNLIQACLNAPDD 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-40  Score=219.82  Aligned_cols=71  Identities=49%  Similarity=0.788  Sum_probs=69.5

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhcc
Q 027658            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKH   72 (220)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~   72 (220)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||++++||+||..+
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999763

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-37  Score=215.06  Aligned_cols=71  Identities=37%  Similarity=0.508  Sum_probs=69.5

Q ss_pred             CCccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhc
Q 027658            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLK   71 (220)
Q Consensus         1 MgR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~   71 (220)
                      +||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+++.|+++|..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999965

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-37  Score=213.35  Aligned_cols=72  Identities=38%  Similarity=0.600  Sum_probs=70.0

Q ss_pred             CccccceeeecCCCCccccccccccchhhhhhhhhccCCcceeeeeeCCCCccccccchhhHHHHHHhhccc
Q 027658            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSSMQETIERYLKHT   73 (220)
Q Consensus         2 gR~Ki~ik~Ien~~~R~vtfsKRr~GL~KKA~ELsvLCda~valivfs~~gkl~~~~s~s~~~IleRY~~~~   73 (220)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+|..||+||....
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~~   74 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN   74 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhccc
Confidence            899999999999999999999999999999999999999999999999999999999999999999998643