Citrus Sinensis ID: 027661

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MANLYRLTLQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKTHR
Secondary Structure (PSIPRED)
ccccccEEccccccccccccccccccccccccccccccccccHHHcccHHHHHcccHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccccEEEEcccHHHHHHccccccHHHHccccccccccccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccccccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccHHHHHccccccccccccHHHHHcccccccHHHHccccccccccHHHHHHHHHHHHHHcccccccccEEHHHHcccHccccccccHcEEEEccccHHHHHHcccccHEEHHHcccccccccccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
MANLYRLtlqqrhrlppvstgvssgystclscvsgvskksdcrrFKASRRLVVGLGAAFCSQFMTMAGTLGANSLIASARQRGAVEQVLkdvqwpeqfpfkeedfqrfdespdslfyetprfvthiddPAIAALTKYysevfppsntpgvsildlcsswvshfppgykqdrivgmgmneeelkrnpvlTEYVVQdlnlnpklpfednsfDVITNVCKTHR
Flexible Loop (DISEMBL)
MANLYRLtlqqrhrlppvstgvssgySTCLSCVsgvskksdcrrFKASRRLVVGLGAAFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNlnpklpfednsfdVITNVCKTHR
Low Complexity Region (SEG)
MANLYRLTLQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKTHR
Disordered region (IsUnstruct)
********************GVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFD**PDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVC****
Disordered Region (DISOPRED)
***L*R*TLQQRHRLPPVSTGVSSGYSTC**********SDCRRFKASRRLVVGLGAAFCSQ**********************************QFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKTHR
Disordered Region (DISEMBL)
MANLYRLTLQQRHRLP*********YSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKTHR
Disordered Region (DISPRO)
*ANLYRLTLQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMTMAGT**ANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKTHR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MANLYRLTLQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKTHR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
255546163	303	methyltransferase, putative [Ricinus com	0.940	0.683	0.707	1e-83
449446582	305	PREDICTED: uncharacterized protein LOC10	0.918	0.662	0.678	1e-78
224091311	311	predicted protein [Populus trichocarpa]	0.772	0.546	0.811	2e-77
388505360	304	unknown [Lotus japonicus]	0.795	0.575	0.729	1e-73
225444946	315	PREDICTED: uncharacterized protein LOC10	0.763	0.533	0.791	1e-73
357501293	308	hypothetical protein MTR_6g092630 [Medic	0.786	0.561	0.745	4e-72
388492332	308	unknown [Medicago truncatula]	0.786	0.561	0.745	4e-72
356520871	301	PREDICTED: uncharacterized protein LOC10	0.936	0.684	0.646	2e-71
297799034	316	hypothetical protein ARALYDRAFT_491801 [	0.913	0.636	0.671	2e-70
297720349	512	Os01g0712500 [Oryza sativa Japonica Grou	0.772	0.332	0.724	1e-69

>gi|255546163|ref|XP_002514141.1| methyltransferase, putative [Ricinus communis] gi|223546597|gb|EEF48095.1| methyltransferase, putative [Ricinus communis]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/219 (70%), Positives = 175/219 (79%), Gaps = 12/219 (5%)

Query: 1   MANLYRLTLQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCR---RFKASRRLVVGLGA 57
           MAN   L LQQ+         +S   + C +  S +S K+  +   RFKA RRLV+GLGA
Sbjct: 1   MANFMCLKLQQK---------LSVLATVCPNHYSPLSTKAHWKLNTRFKAPRRLVLGLGA 51

Query: 58  AFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFY 117
           +F +Q M+  G  G  S IASAR++GAVE+VLK+V+WPE+FPFKEEDFQRFDESPDSLFY
Sbjct: 52  SFWAQIMSTVGVNGGKSFIASAREKGAVEEVLKNVEWPEKFPFKEEDFQRFDESPDSLFY 111

Query: 118 ETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGM 177
           E PRFVTHIDDPAIAALTKYY EVFPPSNTPGVSILD+CSSWVSH+P GYKQDRIVG GM
Sbjct: 112 EAPRFVTHIDDPAIAALTKYYREVFPPSNTPGVSILDMCSSWVSHYPKGYKQDRIVGQGM 171

Query: 178 NEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVC 216
           NEEELKRNPVLTEYVVQDLN+NPKLPFEDN FDVITN  
Sbjct: 172 NEEELKRNPVLTEYVVQDLNINPKLPFEDNFFDVITNTV 210

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446582|ref|XP_004141050.1| PREDICTED: uncharacterized protein LOC101203969 [Cucumis sativus] gi|449488025|ref|XP_004157919.1| PREDICTED: uncharacterized protein LOC101223479 [Cucumis sativus]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/205 (67%), Positives = 170/205 (82%), Gaps = 3/205 (1%)

Query: 13  HRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMTMAGTL-G 71
           HR  P+S    S   +  S  + + + S   + +  RRLV+GLG +F + FM M+G+L G
Sbjct: 10  HRGIPISLVAPSAVWSANSAATSLKRWSAGGKHR--RRLVLGLGISFWAPFMNMSGSLVG 67

Query: 72  ANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAI 131
           A S +ASAR + +VE++LK+V+WPE+FPF+EEDFQRFDE+PDS FYE+PRFVTHIDDPAI
Sbjct: 68  AKSFVASARPKNSVEEILKNVEWPEKFPFREEDFQRFDETPDSYFYESPRFVTHIDDPAI 127

Query: 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEY 191
           AALTK+YSEVFPPSNTPG+S+LD+CSSWVSHFP GYKQ+R+VGMGMNEEELKRN VLTEY
Sbjct: 128 AALTKFYSEVFPPSNTPGISMLDMCSSWVSHFPAGYKQERVVGMGMNEEELKRNTVLTEY 187

Query: 192 VVQDLNLNPKLPFEDNSFDVITNVC 216
           +VQDLN+NPKLPFEDNSFDVITNV 
Sbjct: 188 IVQDLNVNPKLPFEDNSFDVITNVV 212

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091311|ref|XP_002309222.1| predicted protein [Populus trichocarpa] gi|222855198|gb|EEE92745.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 138/170 (81%), Positives = 151/170 (88%)

Query: 45  FKASRRLVVGLGAAFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEED 104
           FKA RRLV+GLGA+F SQFM+MAG   +  LIA A+Q   +E+VLK+V WP+QFPFKEED
Sbjct: 47  FKAPRRLVLGLGASFWSQFMSMAGRARSKHLIALAKQEVVIEEVLKNVDWPQQFPFKEED 106

Query: 105 FQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP 164
           FQRFDESPD LFY+ PRFVTHIDDPAIAALTKYYS+VFPPSNTPGV ILD+CSSWVSHFP
Sbjct: 107 FQRFDESPDLLFYDAPRFVTHIDDPAIAALTKYYSKVFPPSNTPGVCILDMCSSWVSHFP 166

Query: 165 PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITN 214
            GYKQ  IVG+GMNEEELKRNPVLTEY VQDLNLNPKLPFEDNSFDVITN
Sbjct: 167 KGYKQYSIVGLGMNEEELKRNPVLTEYAVQDLNLNPKLPFEDNSFDVITN 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388505360|gb|AFK40746.1| unknown [Lotus japonicus]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/181 (72%), Positives = 158/181 (87%), Gaps = 6/181 (3%)

Query: 39  KSDCRRFKASRRLVVGLGAA-FCSQFMTMAGTLGANSLIASARQRG--AVEQVLKDVQWP 95
           K+  RR K  RR+++G GAA F SQF+   G  G  S IASAR  G  +V+++LK+V+WP
Sbjct: 34  KNWNRRVKGPRRMLLGFGAASFLSQFV---GVSGGKSFIASARITGGPSVDEILKNVEWP 90

Query: 96  EQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDL 155
           EQFPFKEEDF R+DESPD++FYE+PRFVTHIDDPAIAALTKYYS+VFPPSN+PGVSILD+
Sbjct: 91  EQFPFKEEDFLRYDESPDTMFYESPRFVTHIDDPAIAALTKYYSKVFPPSNSPGVSILDM 150

Query: 156 CSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNV 215
           CSSWVSHFPPGY Q+R+VG+G+NEEELKRNPVLTEY+VQDLN+NP+LPFEDNSFD+ITNV
Sbjct: 151 CSSWVSHFPPGYSQERVVGLGLNEEELKRNPVLTEYIVQDLNVNPRLPFEDNSFDIITNV 210

Query: 216 C 216
            
Sbjct: 211 V 211

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444946|ref|XP_002282381.1| PREDICTED: uncharacterized protein LOC100268021 [Vitis vinifera] gi|297738680|emb|CBI27925.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 137/173 (79%), Positives = 158/173 (91%), Gaps = 5/173 (2%)

Query: 49  RRLVVGLGAAFCSQFMTMAGTLGANS--LIASARQRGA---VEQVLKDVQWPEQFPFKEE 103
           RRL++GLGA+F +QF++M+G+ G     L+ASARQ+GA   VEQ+LK+V+WPEQFPFKEE
Sbjct: 50  RRLLLGLGASFWAQFVSMSGSGGIGGKFLVASARQQGASSPVEQILKNVEWPEQFPFKEE 109

Query: 104 DFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF 163
           DFQRFDE+PDS+FYE PRFVTHIDD AIAALTKYYS+VFPPSNT GVSILD+CSSWVSHF
Sbjct: 110 DFQRFDETPDSIFYEGPRFVTHIDDQAIAALTKYYSKVFPPSNTAGVSILDMCSSWVSHF 169

Query: 164 PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVC 216
           P GYKQDR+VG+GMNEEELKRNPVLTE+VVQDLN+NPKLPFEDNSFDVITNV 
Sbjct: 170 PAGYKQDRVVGLGMNEEELKRNPVLTEHVVQDLNVNPKLPFEDNSFDVITNVV 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501293|ref|XP_003620935.1| hypothetical protein MTR_6g092630 [Medicago truncatula] gi|355495950|gb|AES77153.1| hypothetical protein MTR_6g092630 [Medicago truncatula]

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 132/177 (74%), Positives = 153/177 (86%), Gaps = 4/177 (2%)

Query: 43  RRFK-ASRRLVVGLGAA-FCSQFMTMAGTLGANSLIASARQRG--AVEQVLKDVQWPEQF 98
           + FK A RR+++G GA+ F S F+T     G  S IASA+     +V+Q+LK+V+WPEQF
Sbjct: 38  KTFKNAPRRMLLGFGASSFLSHFITNMSASGFKSFIASAKITAGPSVDQILKNVEWPEQF 97

Query: 99  PFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS 158
           PFKEEDFQR+DES DS FYE+PRFVTHIDDPAIAALTKYYS+VFPPSNTPGVSILD+CSS
Sbjct: 98  PFKEEDFQRYDESSDSTFYESPRFVTHIDDPAIAALTKYYSKVFPPSNTPGVSILDMCSS 157

Query: 159 WVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNV 215
           WVSHFPPGYKQ+R+VG+G+NEEELKRNPVLTEY VQDLN+NPKL FEDNSFDVITNV
Sbjct: 158 WVSHFPPGYKQERVVGLGLNEEELKRNPVLTEYTVQDLNVNPKLSFEDNSFDVITNV 214

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492332|gb|AFK34232.1| unknown [Medicago truncatula]

 Score =  276 bits (706), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 132/177 (74%), Positives = 153/177 (86%), Gaps = 4/177 (2%)

Query: 43  RRFK-ASRRLVVGLGAA-FCSQFMTMAGTLGANSLIASARQRG--AVEQVLKDVQWPEQF 98
           + FK A RR+++G GA+ F S F+T     G  S IASA+     +V+Q+LK+V+WPEQF
Sbjct: 38  KTFKNAPRRMLLGFGASSFLSHFITNMSASGFKSFIASAKITAGPSVDQILKNVEWPEQF 97

Query: 99  PFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS 158
           PFKEEDFQR+DES DS FYE+PRFVTHIDDPAIAALTKYYS+VFPPSNTPGVSILD+CSS
Sbjct: 98  PFKEEDFQRYDESSDSTFYESPRFVTHIDDPAIAALTKYYSKVFPPSNTPGVSILDMCSS 157

Query: 159 WVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNV 215
           WVSHFPPGYKQ+R+VG+G+NEEELKRNPVLTEY VQDLN+NPKL FEDNSFDVITNV
Sbjct: 158 WVSHFPPGYKQERVVGLGLNEEELKRNPVLTEYTVQDLNVNPKLSFEDNSFDVITNV 214

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520871|ref|XP_003529083.1| PREDICTED: uncharacterized protein LOC100786557 [Glycine max]

 Score =  274 bits (700), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 141/218 (64%), Positives = 165/218 (75%), Gaps = 12/218 (5%)

Query: 1   MANLYRLTLQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFC 60
           M N   L L  R  LP +    ++  ST LS    V KK + R  K  RR+++GLG +F 
Sbjct: 1   MTNFVGLRLHTRLPLPVLGDVSATATSTTLS--RAVLKKWNWR-VKGPRRMLLGLGVSFL 57

Query: 61  SQFMTMAGTLGANSLIASARQRG--AVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYE 118
           S    MAG+    S IA AR     +V+++LK+V+WP+QFPFKEEDFQRFDE+PDSLFYE
Sbjct: 58  S----MAGS---KSFIALARITAGPSVDEILKNVEWPDQFPFKEEDFQRFDETPDSLFYE 110

Query: 119 TPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMN 178
            PRFVTHIDDPAIAALTKYYS+VFPPSNTPGVSILD+CSSWVSHFP GYKQ+ +VG+GMN
Sbjct: 111 APRFVTHIDDPAIAALTKYYSKVFPPSNTPGVSILDMCSSWVSHFPSGYKQELVVGLGMN 170

Query: 179 EEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVC 216
           EEELK NPVLTEY VQDLN+N KLPF DNSFD+ITNV 
Sbjct: 171 EEELKGNPVLTEYAVQDLNVNTKLPFADNSFDIITNVV 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799034|ref|XP_002867401.1| hypothetical protein ARALYDRAFT_491801 [Arabidopsis lyrata subsp. lyrata] gi|297313237|gb|EFH43660.1| hypothetical protein ARALYDRAFT_491801 [Arabidopsis lyrata subsp. lyrata]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/210 (67%), Positives = 159/210 (75%), Gaps = 9/210 (4%)

Query: 15  LPPV--STGVSSGY--STCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMT--MAG 68
           LPP+  STG S     S+ L+  +  SK     R  + RRLV+G G +  S +M   M+G
Sbjct: 15  LPPIFSSTGNSPFLRASSALNLPTAASKFHRWIRASSRRRLVLG-GFSGASLWMNNNMSG 73

Query: 69  TLGANSLIASARQRGA--VEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHI 126
             G  S IASARQ     VE+ L  V WPE FPFKEEDFQRFDES DS FYE PRFVTHI
Sbjct: 74  NFGGKSFIASARQTNPSPVEEALNKVNWPETFPFKEEDFQRFDESSDSTFYEAPRFVTHI 133

Query: 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNP 186
           DDP+IAALTKYYS+V P S+TPGVSILD+CSSWVSH+PPGY+Q+RIVGMGMNEEELKRNP
Sbjct: 134 DDPSIAALTKYYSKVLPQSDTPGVSILDMCSSWVSHYPPGYRQERIVGMGMNEEELKRNP 193

Query: 187 VLTEYVVQDLNLNPKLPFEDNSFDVITNVC 216
           VLTEY+VQDLNLNPKLPFEDNSF VITNV 
Sbjct: 194 VLTEYIVQDLNLNPKLPFEDNSFQVITNVV 223

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297720349|ref|NP_001172536.1| Os01g0712500 [Oryza sativa Japonica Group] gi|255673618|dbj|BAH91266.1| Os01g0712500 [Oryza sativa Japonica Group]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/174 (72%), Positives = 145/174 (83%), Gaps = 4/174 (2%)

Query: 49  RRLVVGLGAAFCSQFMTMA-GTLGANSLIASARQRGAV---EQVLKDVQWPEQFPFKEED 104
           RR+ +GLGAAF  Q   MA G   + S +ASAR R  V   EQ+LK+V+WP++FPFK ED
Sbjct: 44  RRVFLGLGAAFVDQLARMASGGAPSRSFVASARPRQGVSPVEQILKNVEWPDEFPFKAED 103

Query: 105 FQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP 164
           F RFDES D+LFY  PR+VTHIDD AI ALTKYYSEV PPSNTPGV+ILD+CSSWVSH+P
Sbjct: 104 FSRFDESSDALFYSAPRYVTHIDDQAIEALTKYYSEVLPPSNTPGVAILDMCSSWVSHYP 163

Query: 165 PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT 218
           PGYKQ++IVGMGMNE+ELKRNPVLTEYVVQDLN+NPKLPFEDN+FDVITNV   
Sbjct: 164 PGYKQEKIVGMGMNEDELKRNPVLTEYVVQDLNVNPKLPFEDNTFDVITNVVSV 217

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2134333	317	AT4G29590 [Arabidopsis thalian	0.913	0.634	0.665	4.1e-65
TAIR|locus:2084238	273	AT3G01660 "AT3G01660" [Arabido	0.513	0.413	0.418	8e-21

TAIR|locus:2134333 AT4G29590 [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 139/209 (66%), Positives = 154/209 (73%)

Query:    15 LPPV--STGVSSGY--STCLSCVSGVSKK-SDCRRFKASRRLVVG-LGAAFCSQFMTMAG 68
             LPP+  STG S     S+ L+  +  SK      R  + RRLV+G  G A       M+G
Sbjct:    15 LPPIFSSTGNSPFLRASSALNLPTTASKPFHSWIRASSRRRLVLGGFGGASLWMNNNMSG 74

Query:    69 TLGANSLIASARQRGA--VEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHI 126
               G  S IASARQ     VEQ L  V WPE FPFKEEDFQR+DES DS FYE PRFVTHI
Sbjct:    75 KFGGKSFIASARQTNPSPVEQALNKVDWPETFPFKEEDFQRYDESSDSTFYEAPRFVTHI 134

Query:   127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNP 186
             DDPAIAALTKYYS+V P S+TPGVSILD+CSSWVSH+PPGY+Q+RIVGMGMNEEELKRNP
Sbjct:   135 DDPAIAALTKYYSKVLPQSDTPGVSILDMCSSWVSHYPPGYRQERIVGMGMNEEELKRNP 194

Query:   187 VLTEYVVQDLNLNPKLPFEDNSFDVITNV 215
             VLTEY+VQDLNLN  LPFEDNSF VITNV
Sbjct:   195 VLTEYIVQDLNLNSNLPFEDNSFQVITNV 223

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2084238 AT3G01660 "AT3G01660" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 49/117 (41%), Positives = 68/117 (58%)

Query:    96 EQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDL 155
             ++     E   + +  PD  FY  PRFV H+DD  I++LT+ Y     P +T    +LDL
Sbjct:    46 QRLVLNNEGRTKLNADPDREFYSYPRFVNHVDDSFISSLTELYRNRLRPGST----VLDL 101

Query:   156 CSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVI 212
              SSWVSH P   K +++VG G+N +EL RNP L  + V+DLN + K  FED  FD +
Sbjct:   102 MSSWVSHLPEEVKYEKVVGHGLNAQELARNPRLDYFFVKDLNEDQKFEFEDKYFDAV 158


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       220   0.00094  112 3  11 22  0.37    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  189 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.84u 0.12s 19.96t   Elapsed:  00:00:01
  Total cpu time:  19.84u 0.12s 19.96t   Elapsed:  00:00:01
  Start:  Sat May 11 03:29:43 2013   End:  Sat May 11 03:29:44 2013

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016580001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (315 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	5e-04

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 22/81 (27%)

Query: 148 PGVSILDLCS-------SWVSHFPPGYKQDRIVG----MGMNEEELKR----NPVLTEYV 192
           PG  +LD+                 G     +VG      M E   ++         E+V
Sbjct: 51  PGDKVLDVACGTGDMALLLAKSVGTG----EVVGLDISESMLEVAREKLKKKGVQNVEFV 106

Query: 193 VQDLNLNPKLPFEDNSFDVIT 213
           V D      LPF DNSFD +T
Sbjct: 107 VGDAE---NLPFPDNSFDAVT 124

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.41
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.19
PRK05785	226	hypothetical protein; Provisional	99.0
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.61
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.57
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.55
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.52
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.43
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.41
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.34
PLN02244	340	tocopherol O-methyltransferase	98.32
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.32
PLN02490	340	MPBQ/MSBQ methyltransferase	98.27
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.24
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.21
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.21
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.14
PRK06202	232	hypothetical protein; Provisional	98.14
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.11
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.1
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.1
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.07
PRK08317	241	hypothetical protein; Provisional	98.06
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.04
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.02
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.0
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.0
PTZ00146	293	fibrillarin; Provisional	97.93
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	97.93
PLN02336	475	phosphoethanolamine N-methyltransferase	97.91
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.91
PRK11207	197	tellurite resistance protein TehB; Provisional	97.89
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.83
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.82
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.8
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.78
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	97.78
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.77
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.77
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.76
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.75
PRK04266	226	fibrillarin; Provisional	97.75
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.74
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.74
PLN02336	475	phosphoethanolamine N-methyltransferase	97.73
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.71
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.69
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.69
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.68
PRK14967	223	putative methyltransferase; Provisional	97.64
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.6
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.6
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.52
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.51
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	97.49
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.48
PRK06922	677	hypothetical protein; Provisional	97.48
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.48
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.48
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	97.46
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.46
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.46
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.46
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.46
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.46
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.42
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	97.41
TIGR00438	188	rrmJ cell division protein FtsJ.	97.41
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	97.35
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.35
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.34
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.33
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.3
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.27
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	97.27
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.25
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.23
PRK14968	188	putative methyltransferase; Provisional	97.22
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	97.21
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.2
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.16
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.15
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.13
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.09
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.08
PRK12335	287	tellurite resistance protein TehB; Provisional	97.07
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.06
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.04
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.0
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	96.94
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	96.89
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.86
TIGR03438	301	probable methyltransferase. This model represents	96.84
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	96.77
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	96.77
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	96.71
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	96.64
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	96.63
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.58
PHA03411	279	putative methyltransferase; Provisional	96.56
COG1041	347	Predicted DNA modification methylase [DNA replicat	96.53
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.48
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	96.39
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	96.35
KOG3010	261	consensus Methyltransferase [General function pred	96.32
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	96.25
KOG4300	252	consensus Predicted methyltransferase [General fun	96.24
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	96.21
PRK07402	196	precorrin-6B methylase; Provisional	96.16
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	96.09
COG4123	248	Predicted O-methyltransferase [General function pr	96.07
PHA03412	241	putative methyltransferase; Provisional	96.06
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.85
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	95.83
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	95.83
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	95.78
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	95.7
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	95.63
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.6
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	95.55
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	95.48
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	95.19
COG2890	280	HemK Methylase of polypeptide chain release factor	95.17
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	94.95
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	94.92
PLN03075	296	nicotianamine synthase; Provisional	94.84
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	94.84
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	94.61
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	94.51
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	94.4
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	94.31
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	93.98
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	93.68
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	93.6
PRK13255	218	thiopurine S-methyltransferase; Reviewed	93.27
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	93.14
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	93.05
PRK04148	134	hypothetical protein; Provisional	93.0
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	92.94
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	92.93
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	92.64
PLN02672	1082	methionine S-methyltransferase	92.4
KOG2940	325	consensus Predicted methyltransferase [General fun	92.37
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	92.07
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	92.01
PF13679	141	Methyltransf_32: Methyltransferase domain	92.0
PRK00811	283	spermidine synthase; Provisional	91.81
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	90.33
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	90.04
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	89.94
PRK04457	262	spermidine synthase; Provisional	89.83
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	89.76
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	89.28
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	89.26
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	89.11
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	89.09
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	88.84
PRK13256	226	thiopurine S-methyltransferase; Reviewed	87.85
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	87.84
COG4976	287	Predicted methyltransferase (contains TPR repeat)	87.71
PRK03612	521	spermidine synthase; Provisional	87.03
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	86.73
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	86.69
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	86.26
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	86.24
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	85.84
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	85.66
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	85.39
KOG2361	264	consensus Predicted methyltransferase [General fun	85.3
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	84.68
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	84.68
COG2265	432	TrmA SAM-dependent methyltransferases related to t	84.65
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	84.43
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	82.87
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	82.2
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	81.95
PLN02232	160	ubiquinone biosynthesis methyltransferase	81.89
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	81.71
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	80.87
PRK01581	374	speE spermidine synthase; Validated	80.23

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.41  E-value=7.9e-14  Score=122.91  Aligned_cols=72  Identities=28%  Similarity=0.446  Sum_probs=60.4

Q ss_pred             CCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCCCC----CCCCCCCCCcceEEEeeeec
Q 027661          148 PGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLN----PKLPFEDNSFDVITNVCKTH  219 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN~~----p~LPFeDnSFDaVtcsvSVd  219 (220)
                      ||.+|||+|||   +..++.+.++.++|+|+|+|++||+ +.+++.+.-.++++..    .+|||+|||||+|+|++|++
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglr  130 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR  130 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhh
Confidence            59999999999   7888888888899999999999999 4888876544433322    58999999999999999874

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.19  E-value=4.4e-12  Score=109.95  Aligned_cols=72  Identities=25%  Similarity=0.439  Sum_probs=44.4

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHh-hCcCcchhhhccCCC---C-CCCCCCCCCcceEEEeee
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELK-RNPVLTEYVVQDLNL---N-PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELa-aN~rL~~~~VqDLN~---~-p~LPFeDnSFDaVtcsvS  217 (220)
                      .+|.+|||||||   +...+.+.+++ ++|+|+|+|++||+ ++.++.+...+++..   + .+|||+|+|||+|+|+++
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg  125 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG  125 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence            358999999999   44556665554 79999999999999 477766543333222   2 589999999999999998


Q ss_pred             e
Q 027661          218 T  218 (220)
Q Consensus       218 V  218 (220)
                      +
T Consensus       126 l  126 (233)
T PF01209_consen  126 L  126 (233)
T ss_dssp             G
T ss_pred             H
Confidence            6

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK05785 hypothetical protein; Provisional

Probab=99.00  E-value=5.4e-10  Score=95.63  Aligned_cols=84  Identities=26%  Similarity=0.293  Sum_probs=58.4

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCCC
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPK  201 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p~  201 (220)
                      .|...+..+.+.....+++    +.+|||||||.+.   ++.+.. ..+|+|+|+|++||+. +.+ .++.+.|.   .+
T Consensus        33 ~~~~wr~~~~~~l~~~~~~----~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-~~~~~~d~---~~  103 (226)
T PRK05785         33 QDVRWRAELVKTILKYCGR----PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-DDKVVGSF---EA  103 (226)
T ss_pred             CcHHHHHHHHHHHHHhcCC----CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-cceEEech---hh
Confidence            3455556666666665553    6799999999553   354433 3699999999999995 333 22222222   36


Q ss_pred             CCCCCCCcceEEEeeee
Q 027661          202 LPFEDNSFDVITNVCKT  218 (220)
Q Consensus       202 LPFeDnSFDaVtcsvSV  218 (220)
                      |||+|+|||+|+|++++
T Consensus       104 lp~~d~sfD~v~~~~~l  120 (226)
T PRK05785        104 LPFRDKSFDVVMSSFAL  120 (226)
T ss_pred             CCCCCCCEEEEEecChh
Confidence            89999999999999876

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.61  E-value=8.4e-08  Score=87.62  Aligned_cols=99  Identities=19%  Similarity=0.359  Sum_probs=64.4

Q ss_pred             CCCCccCCCCHHHHHHHH---------------HHHHhhCCCCCCCCCeEeeeccc-------hhhccCCC--CCCCcEE
Q 027661          118 ETPRFVTHIDDPAIAALT---------------KYYSEVFPPSNTPGVSILDLCSS-------WVSHFPPG--YKQDRIV  173 (220)
Q Consensus       118 ~~PRfVtHIDd~ai~~LT---------------~lY~~~lp~~~~pG~~VLDLccS-------WvSHLP~~--v~~~~VV  173 (220)
                      +++|+|.|+=+.....+-               ++|-..+-+  .+|++|||+|||       ...|.+..  ...++|+
T Consensus        57 eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p--~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~  134 (296)
T KOG1540|consen   57 EKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGP--GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVT  134 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCC--CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEE
Confidence            477888877555444332               222223333  458999999999       34455442  2348999


Q ss_pred             EecCCHHHHhh-CcCcchhhh-cc-----CCCC-CCCCCCCCCcceEEEeeee
Q 027661          174 GMGMNEEELKR-NPVLTEYVV-QD-----LNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       174 GLGmN~eELaa-N~rL~~~~V-qD-----LN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++|+|++||+. ..|-.+... .+     +..+ -+|||+|++||+.|+++||
T Consensus       135 v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGI  187 (296)
T KOG1540|consen  135 VLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGI  187 (296)
T ss_pred             EEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecce
Confidence            99999999994 333322111 11     1112 3799999999999999998

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.57  E-value=4e-08  Score=85.69  Aligned_cols=71  Identities=23%  Similarity=0.339  Sum_probs=48.7

Q ss_pred             CCCeEeeeccchhhc---cCCCCCC-CcEEEecCCHHHHhh-CcCcch---hh---hccCCCC-CCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEEELKR-NPVLTE---YV---VQDLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN~eELaa-N~rL~~---~~---VqDLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||.+..   +.+.+++ ++|+|+|+|++||+. +.+...   ..   ++-++.+ .+|||+|++||+|+|+
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  152 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG  152 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence            488999999996653   4333333 699999999999993 433321   00   1111222 4789999999999998


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      +++
T Consensus       153 ~~l  155 (261)
T PLN02233        153 YGL  155 (261)
T ss_pred             ccc
Confidence            764

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.55  E-value=2.4e-08  Score=69.93  Aligned_cols=66  Identities=27%  Similarity=0.325  Sum_probs=41.7

Q ss_pred             eeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCC-CCCCCCCCCCcceEEEeeeec
Q 027661          153 LDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNL-NPKLPFEDNSFDVITNVCKTH  219 (220)
Q Consensus       153 LDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~-~p~LPFeDnSFDaVtcsvSVd  219 (220)
                      |||+||-+.   .+.+. +..+|+|+|+|+++++. ++++....+.-.+. ..++||+|+|||+|+|..+++
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~   71 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLH   71 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccccee
Confidence            899999332   24443 56799999999999995 44444332221111 357899999999999987653

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.52  E-value=4.8e-08  Score=81.30  Aligned_cols=71  Identities=25%  Similarity=0.439  Sum_probs=48.6

Q ss_pred             CCCeEeeeccchhh---ccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhhcc---CCCC-CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVVQD---LNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      +|.+|||+|||++.   .+.+.+++ ++|+|+|+|+++++. +.++.+....+   +..+ .++||++++||+|+++.++
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l  124 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGL  124 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEeccc
Confidence            58999999999554   34444433 699999999999973 44443321111   1111 3578999999999998765

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.43  E-value=1.4e-07  Score=81.88  Aligned_cols=75  Identities=23%  Similarity=0.321  Sum_probs=54.4

Q ss_pred             HHHhhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh--CcCcchhhhccCCCCCCCC-CCCCCcc
Q 027661          137 YYSEVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR--NPVLTEYVVQDLNLNPKLP-FEDNSFD  210 (220)
Q Consensus       137 lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa--N~rL~~~~VqDLN~~p~LP-FeDnSFD  210 (220)
                      ...+.+++    |++|||||||   --.||.++ +.-++.|++++++.+.+  ...+. =..+|++.  .|+ |+|+|||
T Consensus         6 ~I~~~I~p----gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rGv~-Viq~Dld~--gL~~f~d~sFD   77 (193)
T PF07021_consen    6 IIAEWIEP----GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARGVS-VIQGDLDE--GLADFPDQSFD   77 (193)
T ss_pred             HHHHHcCC----CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcCCC-EEECCHHH--hHhhCCCCCcc
Confidence            34566764    9999999999   44556553 45689999999999884  44443 22366666  464 9999999


Q ss_pred             eEEEeeeec
Q 027661          211 VITNVCKTH  219 (220)
Q Consensus       211 aVtcsvSVd  219 (220)
                      .||++-++|
T Consensus        78 ~VIlsqtLQ   86 (193)
T PF07021_consen   78 YVILSQTLQ   86 (193)
T ss_pred             EEehHhHHH
Confidence            999987654

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.41  E-value=3.5e-07  Score=77.56  Aligned_cols=87  Identities=20%  Similarity=0.225  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCCCCC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPKLP  203 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p~LP  203 (220)
                      +..+.+..+.+.+.+... .++.+|||+|||.+.   +|....+..+|+|+|+|+++++. +.++.+--+  .+.+..-|
T Consensus        24 ~~~~~~~~~~~~~~l~~~-~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~--~~~d~~~~  100 (204)
T TIGR03587        24 QSLVAAKLAMFARALNRL-PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINI--IQGSLFDP  100 (204)
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcE--EEeeccCC
Confidence            333444444444443221 136799999999544   34444445799999999999994 544432111  11122128


Q ss_pred             CCCCCcceEEEeee
Q 027661          204 FEDNSFDVITNVCK  217 (220)
Q Consensus       204 FeDnSFDaVtcsvS  217 (220)
                      |++++||+|+|...
T Consensus       101 ~~~~sfD~V~~~~v  114 (204)
T TIGR03587       101 FKDNFFDLVLTKGV  114 (204)
T ss_pred             CCCCCEEEEEECCh
Confidence            99999999998654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.34  E-value=9.3e-07  Score=74.99  Aligned_cols=77  Identities=13%  Similarity=0.214  Sum_probs=52.5

Q ss_pred             HHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcc--hhhhccCCCCCCCCCCCCCc
Q 027661          136 KYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLT--EYVVQDLNLNPKLPFEDNSF  209 (220)
Q Consensus       136 ~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~--~~~VqDLN~~p~LPFeDnSF  209 (220)
                      +.-.+.++.  .++.+|||+|||.+.   ++..  ...+|+|+|+|+++++. +.+..  .+.+.|++   .+||++++|
T Consensus        32 ~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~---~~~~~~~~f  104 (251)
T PRK10258         32 DALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRE--RGSQVTALDLSPPMLAQARQKDAADHYLAGDIE---SLPLATATF  104 (251)
T ss_pred             HHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHH--cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcc---cCcCCCCcE
Confidence            333455654  246799999999654   3443  23699999999999983 33332  23334443   478999999


Q ss_pred             ceEEEeeeec
Q 027661          210 DVITNVCKTH  219 (220)
Q Consensus       210 DaVtcsvSVd  219 (220)
                      |+|++..+++
T Consensus       105 D~V~s~~~l~  114 (251)
T PRK10258        105 DLAWSNLAVQ  114 (251)
T ss_pred             EEEEECchhh
Confidence            9999987653

>PLN02244 tocopherol O-methyltransferase

Probab=98.32  E-value=8.3e-07  Score=80.31  Aligned_cols=70  Identities=19%  Similarity=0.243  Sum_probs=47.4

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhh----hccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||++.   +|.+.. ..+|+|+|+|+++++. +.+..+..    ++-+..+ ..+||+|++||+|+|..+.
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            58899999999654   455433 3599999999999983 43322211    1111111 3689999999999997654

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.32  E-value=1.1e-06  Score=76.45  Aligned_cols=83  Identities=18%  Similarity=0.324  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCC---CCcEEEecCCHHHHhh-CcCcch--hhhccCCCC
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYK---QDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLN  199 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~---~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~  199 (220)
                      ...+.+.++-.+.++.   ++.+|||+|||.+.+   +.+.++   ..+|+|+|+|+++++. .++...  +.+.|.   
T Consensus        69 ~l~~~i~~~l~~~l~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~---  142 (272)
T PRK11088         69 PLRDAVANLLAERLDE---KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS---  142 (272)
T ss_pred             HHHHHHHHHHHHhcCC---CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec---
Confidence            4556666666777764   357899999996654   322222   2479999999999983 433322  233333   


Q ss_pred             CCCCCCCCCcceEEEeee
Q 027661          200 PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       200 p~LPFeDnSFDaVtcsvS  217 (220)
                      .++||+|++||+|++.++
T Consensus       143 ~~lp~~~~sfD~I~~~~~  160 (272)
T PRK11088        143 HRLPFADQSLDAIIRIYA  160 (272)
T ss_pred             ccCCCcCCceeEEEEecC
Confidence            358999999999998653

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.27  E-value=1.8e-07  Score=86.31  Aligned_cols=71  Identities=8%  Similarity=0.060  Sum_probs=47.0

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||.+.   .+.+.++..+|+|+|+|+++++. +.+....-++-+..+ .++||++++||+|+|..++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L  188 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSI  188 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence            57899999999654   23333344689999999999984 333221111111222 3679999999999987654

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.24  E-value=5e-07  Score=69.35  Aligned_cols=64  Identities=23%  Similarity=0.310  Sum_probs=44.8

Q ss_pred             CCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||++||.+   .++.+. +. +|+|+|+|+++++.     .....+....+..++++++||+|+|..++
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~-~~-~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l   88 (161)
T PF13489_consen   22 PGKRVLDIGCGTGSFLRALAKR-GF-EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVL   88 (161)
T ss_dssp             TTSEEEEESSTTSHHHHHHHHT-TS-EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh-CC-EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence            4789999999944   445332 23 99999999999988     11112222223567789999999998654

...

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.21  E-value=1.2e-06  Score=79.65  Aligned_cols=95  Identities=19%  Similarity=0.394  Sum_probs=63.5

Q ss_pred             ccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcc
Q 027661          114 SLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLT  189 (220)
Q Consensus       114 ~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~  189 (220)
                      ..||..|..  -++++-++++....+.+-=   +||++|||++|||++-   +.+++ ..+|+|+++|+++++ ++.++.
T Consensus        43 cayf~~~~~--tL~eAQ~~k~~~~~~kl~L---~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~  116 (283)
T COG2230          43 CAYFEDPDM--TLEEAQRAKLDLILEKLGL---KPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIA  116 (283)
T ss_pred             eEEeCCCCC--ChHHHHHHHHHHHHHhcCC---CCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHH
Confidence            344444443  5788888888777776643   4799999999999875   44433 369999999999999 477666


Q ss_pred             hhhhc-cCCCC-CCCCCCCCCcceEEE
Q 027661          190 EYVVQ-DLNLN-PKLPFEDNSFDVITN  214 (220)
Q Consensus       190 ~~~Vq-DLN~~-p~LPFeDnSFDaVtc  214 (220)
                      +.-.. ++... ...+.-++.||.|+.
T Consensus       117 ~~gl~~~v~v~l~d~rd~~e~fDrIvS  143 (283)
T COG2230         117 ARGLEDNVEVRLQDYRDFEEPFDRIVS  143 (283)
T ss_pred             HcCCCcccEEEeccccccccccceeee
Confidence            53222 11111 244444555999875

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.21  E-value=2.2e-07  Score=84.82  Aligned_cols=115  Identities=14%  Similarity=0.210  Sum_probs=67.5

Q ss_pred             CccccccCCCCCcccCcCCCCcc--CCCCHHHHHHHHHHHHhhCCCCC-----CCCCeEeeeccchhhc---cCCCCCCC
Q 027661          101 KEEDFQRFDESPDSLFYETPRFV--THIDDPAIAALTKYYSEVFPPSN-----TPGVSILDLCSSWVSH---FPPGYKQD  170 (220)
Q Consensus       101 ~~~~f~R~DesdD~~FY~~PRfV--tHIDd~ai~~LT~lY~~~lp~~~-----~pG~~VLDLccSWvSH---LP~~v~~~  170 (220)
                      .++++.++++-.+..++..=.|.  .++...-++-+.+.+.+.++.+.     .+|.+|||||||.+..   |..  ...
T Consensus        77 ~~~e~~~f~~~a~~WW~~~g~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~--~g~  154 (322)
T PLN02396         77 NEDELAKFSAIADTWWHSEGPFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLAR--MGA  154 (322)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHH--cCC
Confidence            45555566665554444333333  34455555555554444443321     2578999999997765   332  235


Q ss_pred             cEEEecCCHHHHhh-CcCcchhhh-ccC---CCC-CCCCCCCCCcceEEEeee
Q 027661          171 RIVGMGMNEEELKR-NPVLTEYVV-QDL---NLN-PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       171 ~VVGLGmN~eELaa-N~rL~~~~V-qDL---N~~-p~LPFeDnSFDaVtcsvS  217 (220)
                      +|+|+|+++++++. +.+...... .++   ..+ .+||+++++||+|+|...
T Consensus       155 ~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v  207 (322)
T PLN02396        155 TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV  207 (322)
T ss_pred             EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence            99999999999984 433211100 011   111 367899999999999754

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.14  E-value=2.8e-06  Score=72.72  Aligned_cols=67  Identities=10%  Similarity=0.054  Sum_probs=45.6

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||.+.   ++.+.....+|+|+|.|+++++. +++--++...|..   +++ ++++||+|+|...+
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~---~~~-~~~~fD~v~~~~~l   99 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVR---DWK-PKPDTDVVVSNAAL   99 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChh---hCC-CCCCceEEEEehhh
Confidence            57899999999443   44443334699999999999983 3332233334432   343 56899999998764

>PRK06202 hypothetical protein; Provisional

Probab=98.14  E-value=4.5e-06  Score=70.40  Aligned_cols=71  Identities=13%  Similarity=0.029  Sum_probs=45.5

Q ss_pred             CCCeEeeeccchhhc---cCC---CCC-CCcEEEecCCHHHHhh-CcCcchhhhccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPP---GYK-QDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~---~v~-~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||.+..   |.+   +.+ ..+|+|+|+|+++++. +.+....-+.-...+ -.+|+++++||+|+|+.++
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l  139 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL  139 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence            477999999996542   221   112 2489999999999984 444432111100011 2467789999999998765

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.11  E-value=8.7e-07  Score=69.88  Aligned_cols=65  Identities=25%  Similarity=0.372  Sum_probs=42.8

Q ss_pred             CCCeEeeeccchhhc---cCCCC-CCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCCCCC--CCCCCcceEE
Q 027661          148 PGVSILDLCSSWVSH---FPPGY-KQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNPKLP--FEDNSFDVIT  213 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v-~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p~LP--FeDnSFDaVt  213 (220)
                      .+.+|||||||.+..   +.+.+ ...+|+|+|+|+++++. +.++.+.       .+.|+..   +|  |+ +.||.|+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~---l~~~~~-~~~D~I~   78 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED---LPQELE-EKFDIII   78 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC---GCGCSS-TTEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc---cccccC-CCeeEEE
Confidence            478999999994433   33222 24689999999999994 5544332       2233332   44  66 9999999


Q ss_pred             Eee
Q 027661          214 NVC  216 (220)
Q Consensus       214 csv  216 (220)
                      +..
T Consensus        79 ~~~   81 (152)
T PF13847_consen   79 SNG   81 (152)
T ss_dssp             EES
T ss_pred             EcC
Confidence            874

...

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.10  E-value=9.6e-07  Score=64.93  Aligned_cols=69  Identities=20%  Similarity=0.189  Sum_probs=43.0

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh----hhccCCCCC-CCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY----VVQDLNLNP-KLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~----~VqDLN~~p-~LPFeDnSFDaVtcsv  216 (220)
                      ||.+|||||||.+..   +.+.....+|+|+|.|+++++. +.++.+.    -++-++.+. ..+-..+.||+|+|..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            588999999996655   3222233699999999999993 5555211    111112222 2233334599999986

...

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.10  E-value=3.9e-06  Score=68.35  Aligned_cols=84  Identities=23%  Similarity=0.290  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcch---hhhccCCCCCC
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTE---YVVQDLNLNPK  201 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~---~~VqDLN~~p~  201 (220)
                      .....+-+.+....+.   .+.+|||||||.+   .++.+.....+|+|+|.|++++.. +.++..   +...|+.   .
T Consensus        18 ~~~~~l~~~~~~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~---~   91 (240)
T TIGR02072        18 EMAKRLLALLKEKGIF---IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAE---K   91 (240)
T ss_pred             HHHHHHHHHhhhhccC---CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchh---h
Confidence            3444444444443211   2468999999954   345444444689999999999973 444431   2223333   5


Q ss_pred             CCCCCCCcceEEEeeee
Q 027661          202 LPFEDNSFDVITNVCKT  218 (220)
Q Consensus       202 LPFeDnSFDaVtcsvSV  218 (220)
                      +|+++++||+|+|..+.
T Consensus        92 ~~~~~~~fD~vi~~~~l  108 (240)
T TIGR02072        92 LPLEDSSFDLIVSNLAL  108 (240)
T ss_pred             CCCCCCceeEEEEhhhh
Confidence            68899999999997653

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.07  E-value=9e-07  Score=65.40  Aligned_cols=62  Identities=29%  Similarity=0.495  Sum_probs=39.4

Q ss_pred             Eeeeccchhhc-------cCCCCCCCcEEEecCCHHHHhh-CcCcc------hhhhccCCCCCCCCCCCCCcceEEEeee
Q 027661          152 ILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELKR-NPVLT------EYVVQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       152 VLDLccSWvSH-------LP~~v~~~~VVGLGmN~eELaa-N~rL~------~~~VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      |||||||-+.+       ++.. ...+++|+|+|+++|+. +.+..      ++.+.|+   .+||+.+++||+|+|+.+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~-~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~---~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAG-PSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA---RDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT---TCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhc-ccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH---hHCcccCCCeeEEEEcCC
Confidence            79999995444       3221 12699999999999994 44443      2334555   348899999999999543

>PRK08317 hypothetical protein; Provisional

Probab=98.06  E-value=7.6e-06  Score=66.33  Aligned_cols=72  Identities=24%  Similarity=0.291  Sum_probs=46.5

Q ss_pred             CCCCeEeeeccchhh---ccCCCC-CCCcEEEecCCHHHHhh-CcCcc--hhhhccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          147 TPGVSILDLCSSWVS---HFPPGY-KQDRIVGMGMNEEELKR-NPVLT--EYVVQDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       147 ~pG~~VLDLccSWvS---HLP~~v-~~~~VVGLGmN~eELaa-N~rL~--~~~VqDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      .++.+|||+|||.+.   ++.+.+ ..++|+|+|.|++++.. +.+..  ...+.-.+.+ ..+|+++++||.|++...+
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~   97 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVL   97 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEechh
Confidence            358899999999444   444444 23699999999998873 22211  1111112222 3578899999999987543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.04  E-value=2.2e-06  Score=73.76  Aligned_cols=70  Identities=27%  Similarity=0.346  Sum_probs=46.1

Q ss_pred             CCCeEeeeccchhh---ccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhhccCC---C-CCCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVVQDLN---L-NPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~VqDLN---~-~p~LPFeDnSFDaVtcsvS  217 (220)
                      +|.+|||||||.+.   .+...++. ++|+|+|+|+++++. +.+..+....++.   . ...+||++++||+|++...
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v  155 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV  155 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence            58999999999553   33333333 589999999999984 4433322111111   1 1367899999999997653

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.02  E-value=7.7e-06  Score=69.54  Aligned_cols=68  Identities=16%  Similarity=0.203  Sum_probs=47.4

Q ss_pred             CCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCCCCCCcceEEEeeeec
Q 027661          148 PGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPFEDNSFDVITNVCKTH  219 (220)
Q Consensus       148 pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcsvSVd  219 (220)
                      ++.+|||||||.+   .++.+.+...+|+|+|.|+++++. +.++..  +...|+.   .+ .++++||+|+|..+++
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~---~~-~~~~~fD~v~~~~~l~  104 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIA---SW-QPPQALDLIFANASLQ  104 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchh---cc-CCCCCccEEEEccChh
Confidence            5889999999944   456555555799999999999984 555433  2223332   22 2457999999987753

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.00  E-value=8.5e-06  Score=71.24  Aligned_cols=87  Identities=21%  Similarity=0.221  Sum_probs=53.6

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchh-hhccCCCC-
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-VVQDLNLN-  199 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-~VqDLN~~-  199 (220)
                      +=.+-+++..++.+.+-.   .||.+|||||||.+   .++.... ..+|+|+|+++++++. +.++... .+.-...+ 
T Consensus        33 ~~~gg~~~~~~~l~~l~l---~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~  108 (263)
T PTZ00098         33 ISSGGIEATTKILSDIEL---NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI  108 (263)
T ss_pred             CCCCchHHHHHHHHhCCC---CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc
Confidence            334444454555544422   25899999999954   3454432 3599999999999883 4433221 11111111 


Q ss_pred             CCCCCCCCCcceEEEee
Q 027661          200 PKLPFEDNSFDVITNVC  216 (220)
Q Consensus       200 p~LPFeDnSFDaVtcsv  216 (220)
                      .++||++++||+|++..
T Consensus       109 ~~~~~~~~~FD~V~s~~  125 (263)
T PTZ00098        109 LKKDFPENTFDMIYSRD  125 (263)
T ss_pred             ccCCCCCCCeEEEEEhh
Confidence            36799999999999853

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.00  E-value=5.6e-06  Score=68.22  Aligned_cols=66  Identities=24%  Similarity=0.273  Sum_probs=45.1

Q ss_pred             CCeEeeeccchhhcc---CCCCCCCcEEEecCCHHHHhh-C-cCcchhhhccCCCCCCC-CCCCCCcceEEEeeee
Q 027661          149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKR-N-PVLTEYVVQDLNLNPKL-PFEDNSFDVITNVCKT  218 (220)
Q Consensus       149 G~~VLDLccSWvSHL---P~~v~~~~VVGLGmN~eELaa-N-~rL~~~~VqDLN~~p~L-PFeDnSFDaVtcsvSV  218 (220)
                      +.+|||+|||.+.++   .+. ....++|+|.|+++++. . ..+ ++...|++.  .+ |+++++||+|+|..++
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~~~-~~~~~d~~~--~l~~~~~~sfD~Vi~~~~l   85 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVARGV-NVIQGDLDE--GLEAFPDKSFDYVILSQTL   85 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHcCC-eEEEEEhhh--cccccCCCCcCEEEEhhHh
Confidence            789999999977663   222 23478999999999984 2 222 233344432  24 4889999999998654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PTZ00146 fibrillarin; Provisional

Probab=97.93  E-value=7.3e-06  Score=74.91  Aligned_cols=89  Identities=16%  Similarity=0.083  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHhhCCCCC-CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHH----hhCcCcc--hhhhccCC
Q 027661          129 PAIAALTKYYSEVFPPSN-TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEEL----KRNPVLT--EYVVQDLN  197 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~-~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eEL----aaN~rL~--~~~VqDLN  197 (220)
                      +++..|.+..-.-+.... +||++|||||||   |++|+.+.++. ++|+++|++++++    ...++.+  ..++.|.+
T Consensus       112 p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~  191 (293)
T PTZ00146        112 PFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDAR  191 (293)
T ss_pred             CcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCcc
Confidence            456666644422222111 479999999999   99999998864 8999999998643    2222111  12345555


Q ss_pred             CCCCCCCCCCCcceEEEeee
Q 027661          198 LNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       198 ~~p~LPFeDnSFDaVtcsvS  217 (220)
                      ...++++...+||+|+|.+.
T Consensus       192 ~p~~y~~~~~~vDvV~~Dva  211 (293)
T PTZ00146        192 YPQKYRMLVPMVDVIFADVA  211 (293)
T ss_pred             ChhhhhcccCCCCEEEEeCC
Confidence            43234444568999999764

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=97.93  E-value=8e-06  Score=70.26  Aligned_cols=91  Identities=12%  Similarity=0.166  Sum_probs=56.4

Q ss_pred             CccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCC--CCCcEEEecCCHHHHh-hCcCcchhhh-
Q 027661          121 RFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGY--KQDRIVGMGMNEEELK-RNPVLTEYVV-  193 (220)
Q Consensus       121 RfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v--~~~~VVGLGmN~eELa-aN~rL~~~~V-  193 (220)
                      |++.--| .....+..+.+..+++    |.+|||||||.+..   +...+  ...+|+|+|.|++|++ ++.++.++-. 
T Consensus        34 ~~~p~y~-~~~~~~~~~~~~~~~~----~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~  108 (247)
T PRK15451         34 RSVPGYS-NIISMIGMLAERFVQP----GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP  108 (247)
T ss_pred             hcCCChH-HHHHHHHHHHHHhCCC----CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            3444433 4455566666677764    88999999996665   22211  2369999999999998 4665543211 


Q ss_pred             ---ccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          194 ---QDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       194 ---qDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                         +-+..+ .++|++  .||+|+|...+
T Consensus       109 ~~v~~~~~d~~~~~~~--~~D~vv~~~~l  135 (247)
T PRK15451        109 TPVDVIEGDIRDIAIE--NASMVVLNFTL  135 (247)
T ss_pred             CCeEEEeCChhhCCCC--CCCEEehhhHH
Confidence               111111 356765  48999987643

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.91  E-value=1.1e-05  Score=74.99  Aligned_cols=67  Identities=25%  Similarity=0.376  Sum_probs=46.5

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcc------hhhhccCCCCCCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLT------EYVVQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~------~~~VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      +|.+|||+|||++.+   +.... ..+|+|+|+|+++++. +.+..      ++...|+   ..+||++++||+|+|..+
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~s~~~  341 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADC---TKKTYPDNSFDVIYSRDT  341 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCc---ccCCCCCCCEEEEEECCc
Confidence            588999999998864   44433 3589999999999983 32221      1122332   246888999999999755


Q ss_pred             e
Q 027661          218 T  218 (220)
Q Consensus       218 V  218 (220)
                      +
T Consensus       342 l  342 (475)
T PLN02336        342 I  342 (475)
T ss_pred             c
Confidence            4

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.91  E-value=1e-05  Score=73.32  Aligned_cols=68  Identities=19%  Similarity=0.223  Sum_probs=43.7

Q ss_pred             CCCeEeeeccchhhcc---CCCCCCCcEEEecCCHHHHhhCcCcchhhhccCC-----CC-CCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLN-----LN-PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSHL---P~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN-----~~-p~LPFeDnSFDaVtcsvS  217 (220)
                      +|.+|||||||.+.|.   .+ .+..+|+|+|.++.++.+......+.-.+.|     .+ -.+|+ +++||+|+|.-.
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~-~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v  198 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLG-AGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV  198 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence            4789999999988773   22 2345799999999988642211111100111     11 36788 899999998543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.89  E-value=8.3e-06  Score=68.11  Aligned_cols=67  Identities=13%  Similarity=0.177  Sum_probs=43.2

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCC---C-CCCCCCCCCcceEEEeeee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNL---N-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~---~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      +.+|||+|||.+.+   |.+.  ..+|+|+|+|+++++. +......-+.+++.   + ..++++ ++||+|+|....
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~  105 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVL  105 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecch
Confidence            67999999997665   5543  2599999999999873 43332221111111   1 244664 679999998653

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.83  E-value=7.2e-06  Score=73.13  Aligned_cols=83  Identities=22%  Similarity=0.322  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc----CCCC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD----LNLN  199 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD----LN~~  199 (220)
                      +.|..+..+++.+.+.-  +||++||||+|||++-   +.+.. ..+|+|+.+|++..+ ++.++.+.-..+    ...+
T Consensus        44 e~AQ~~k~~~~~~~~~l--~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D  120 (273)
T PF02353_consen   44 EEAQERKLDLLCEKLGL--KPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQD  120 (273)
T ss_dssp             HHHHHHHHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-
T ss_pred             HHHHHHHHHHHHHHhCC--CCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEee
Confidence            35566666666666543  5899999999999875   44433 359999999999999 455554432111    1111


Q ss_pred             -CCCCCCCCCcceEEEee
Q 027661          200 -PKLPFEDNSFDVITNVC  216 (220)
Q Consensus       200 -p~LPFeDnSFDaVtcsv  216 (220)
                       .+++.   +||+|++.-
T Consensus       121 ~~~~~~---~fD~IvSi~  135 (273)
T PF02353_consen  121 YRDLPG---KFDRIVSIE  135 (273)
T ss_dssp             GGG------S-SEEEEES
T ss_pred             ccccCC---CCCEEEEEe
Confidence             13333   999988753

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00452 methyltransferase, putative

Probab=97.82  E-value=3.5e-05  Score=70.36  Aligned_cols=92  Identities=17%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             cCCCCHHHHHHHH-HHHHhhCCCCCCCCCeEeeeccchhhccCC--CCCCCcEEEecCCHHHHhhCcCcchhh-----hc
Q 027661          123 VTHIDDPAIAALT-KYYSEVFPPSNTPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVLTEYV-----VQ  194 (220)
Q Consensus       123 VtHIDd~ai~~LT-~lY~~~lp~~~~pG~~VLDLccSWvSHLP~--~v~~~~VVGLGmN~eELaaN~rL~~~~-----Vq  194 (220)
                      ..|+|..-++.+. +.+-..+..  .+|.+|||+|||.+.|.-.  ..+...|+|+|.|+.++.+-.....+.     ++
T Consensus        97 ~~~~~~e~~s~~~~~~~l~~l~~--~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~  174 (314)
T TIGR00452        97 GIKIDSEWRSDIKWDRVLPHLSP--LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAI  174 (314)
T ss_pred             cccCCHHHHHHHHHHHHHHhcCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeE
Confidence            6788999888876 223333322  3488999999998888322  113358999999999886311111111     11


Q ss_pred             cCCCC-CCCCCCCCCcceEEEeee
Q 027661          195 DLNLN-PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       195 DLN~~-p~LPFeDnSFDaVtcsvS  217 (220)
                      -++.. ..+|+. ++||+|+|...
T Consensus       175 ~~~~~ie~lp~~-~~FD~V~s~gv  197 (314)
T TIGR00452       175 LEPLGIEQLHEL-YAFDTVFSMGV  197 (314)
T ss_pred             EEECCHHHCCCC-CCcCEEEEcch
Confidence            11111 245654 58999998653

Known examples to date are restricted to the proteobacteria.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.80  E-value=2.5e-05  Score=65.61  Aligned_cols=81  Identities=12%  Similarity=0.144  Sum_probs=50.0

Q ss_pred             HHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHh-hCcCcchhhh----ccCCCCC-CCCCC
Q 027661          136 KYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELK-RNPVLTEYVV----QDLNLNP-KLPFE  205 (220)
Q Consensus       136 ~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELa-aN~rL~~~~V----qDLN~~p-~LPFe  205 (220)
                      ++..+.+..  ++|.+|||+|||.+.   ++.+.++ .++|+|+|.++++++ ++.++...-.    +-.+.+. +.+.+
T Consensus        62 ~~~~~~l~~--~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~  139 (205)
T PRK13944         62 AMMCELIEP--RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK  139 (205)
T ss_pred             HHHHHhcCC--CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence            334444433  358999999999543   3333333 369999999999987 3555543321    1122221 23335


Q ss_pred             CCCcceEEEeeee
Q 027661          206 DNSFDVITNVCKT  218 (220)
Q Consensus       206 DnSFDaVtcsvSV  218 (220)
                      +.+||+|+|..+.
T Consensus       140 ~~~fD~Ii~~~~~  152 (205)
T PRK13944        140 HAPFDAIIVTAAA  152 (205)
T ss_pred             CCCccEEEEccCc
Confidence            6799999998764

>TIGR00740 methyltransferase, putative

Probab=97.78  E-value=2.8e-05  Score=65.92  Aligned_cols=91  Identities=13%  Similarity=0.143  Sum_probs=53.2

Q ss_pred             CccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCC--CCCcEEEecCCHHHHh-hCcCcchhhh-
Q 027661          121 RFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGY--KQDRIVGMGMNEEELK-RNPVLTEYVV-  193 (220)
Q Consensus       121 RfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v--~~~~VVGLGmN~eELa-aN~rL~~~~V-  193 (220)
                      |.+..-+ .....+..+-...++    ++.+|||||||.+..   +.+.+  ...+|+|+|+|+++|+ ++.++.++.. 
T Consensus        31 ~~~p~y~-~~~~~~~~l~~~~~~----~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~  105 (239)
T TIGR00740        31 RSVPGYS-NIITAIGMLAERFVT----PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE  105 (239)
T ss_pred             ccCCCHH-HHHHHHHHHHHHhCC----CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence            4444332 444555553333343    478999999996665   22222  2368999999999998 3555543211 


Q ss_pred             ---ccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          194 ---QDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       194 ---qDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                         .-+..+ .++|++  ++|+|+|..++
T Consensus       106 ~~v~~~~~d~~~~~~~--~~d~v~~~~~l  132 (239)
T TIGR00740       106 IPVEILCNDIRHVEIK--NASMVILNFTL  132 (239)
T ss_pred             CCeEEEECChhhCCCC--CCCEEeeecch
Confidence               111111 245665  48999887664

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=97.78  E-value=8.9e-06  Score=68.32  Aligned_cols=77  Identities=17%  Similarity=0.144  Sum_probs=49.4

Q ss_pred             HHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhc---cCCCCC--CCC--CCC
Q 027661          138 YSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLNP--KLP--FED  206 (220)
Q Consensus       138 Y~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~p--~LP--FeD  206 (220)
                      +.++++.   ++.+|||||||.+.+   +.......+|+|+|.|+++++. ..++......   -++.+.  .+|  +++
T Consensus        33 ~~~~~~~---~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~  109 (202)
T PRK00121         33 WAELFGN---DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPD  109 (202)
T ss_pred             HHHHcCC---CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCc
Confidence            4455553   367999999996655   4343444689999999999983 4333221111   111121  355  889


Q ss_pred             CCcceEEEeee
Q 027661          207 NSFDVITNVCK  217 (220)
Q Consensus       207 nSFDaVtcsvS  217 (220)
                      ++||+|++.+.
T Consensus       110 ~~~D~V~~~~~  120 (202)
T PRK00121        110 GSLDRIYLNFP  120 (202)
T ss_pred             cccceEEEECC
Confidence            99999998764

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.77  E-value=1.3e-05  Score=59.16  Aligned_cols=70  Identities=14%  Similarity=0.032  Sum_probs=44.3

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCCC--CCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLNP--KLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~p--~LPFeDnSFDaVtcsvS  217 (220)
                      ++.+|||+|||++.+   +....+..+|+|+|.|+++++. +..+...-   ++-.+.+.  .++...++||+|++..+
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS   97 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence            378999999996665   4444434699999999999983 43333221   11111111  14444579999998654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.77  E-value=1.5e-05  Score=67.42  Aligned_cols=71  Identities=15%  Similarity=0.187  Sum_probs=44.6

Q ss_pred             hhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCC-CCCCCCCCCcce
Q 027661          140 EVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLN-PKLPFEDNSFDV  211 (220)
Q Consensus       140 ~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~-p~LPFeDnSFDa  211 (220)
                      ..+|+    |.+|||+|||.+..   +.......+|+|+|.|+++++ ++.++.+.-..+   .+.+ .+++. +++||+
T Consensus        41 ~~l~~----g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDl  115 (187)
T PRK00107         41 PYLPG----GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDV  115 (187)
T ss_pred             hhcCC----CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccE
Confidence            44553    78999999995532   222223469999999999987 344433321111   1111 24566 789999


Q ss_pred             EEEe
Q 027661          212 ITNV  215 (220)
Q Consensus       212 Vtcs  215 (220)
                      |+|.
T Consensus       116 V~~~  119 (187)
T PRK00107        116 VTSR  119 (187)
T ss_pred             EEEc
Confidence            9985

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.76  E-value=2.7e-05  Score=65.99  Aligned_cols=72  Identities=13%  Similarity=0.079  Sum_probs=47.5

Q ss_pred             CCCeEeeeccchhhc---cCCCCCC-CcEEEecCCHHHHh-hCcCcchhhhcc---CCCCC-CCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEEELK-RNPVLTEYVVQD---LNLNP-KLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~p-~LPFeDnSFDaVtcsvSV  218 (220)
                      +|.+|||+|||.+..   +...++. ++|+|+|.|+++++ ++.++...-..+   .+.+. ..+++++.||+|+|..++
T Consensus        76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~~~  155 (212)
T PRK13942         76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTAAG  155 (212)
T ss_pred             CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence            589999999994442   3333333 69999999999998 466665432221   12221 334577899999998765


Q ss_pred             c
Q 027661          219 H  219 (220)
Q Consensus       219 d  219 (220)
                      .
T Consensus       156 ~  156 (212)
T PRK13942        156 P  156 (212)
T ss_pred             c
Confidence            3

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.75  E-value=1.6e-05  Score=74.42  Aligned_cols=111  Identities=22%  Similarity=0.166  Sum_probs=87.7

Q ss_pred             ccccCCCCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccc--hhhccCCCCCCCcEEEecCCHHH
Q 027661          104 DFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS--WVSHFPPGYKQDRIVGMGMNEEE  181 (220)
Q Consensus       104 ~f~R~DesdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccS--WvSHLP~~v~~~~VVGLGmN~eE  181 (220)
                      ++.-..=..+-.|+..|.+..|-+.-.+..-+..|++.+.+    |+++||+.||  +.+++.+.++...++|++.|+.|
T Consensus        70 dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e  145 (364)
T KOG1269|consen   70 DLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRESCFP----GSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYE  145 (364)
T ss_pred             hhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhcCcc----cccccccCcCcCchhHHHHHhccCCccCCCcCHHH
Confidence            33334445677888899999999999999999999999864    8999999999  99999999999999999999999


Q ss_pred             HhhCcCcch-hhhccCCCC-----CCCCCCCCCcceEEEeeee
Q 027661          182 LKRNPVLTE-YVVQDLNLN-----PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       182 LaaN~rL~~-~~VqDLN~~-----p~LPFeDnSFDaVtcsvSV  218 (220)
                      +.+...+.. ..+++.+..     ++-||+||+||.|-+--++
T Consensus       146 ~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~  188 (364)
T KOG1269|consen  146 AFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV  188 (364)
T ss_pred             HHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence            997444443 333333322     3669999999999765544

>PRK04266 fibrillarin; Provisional

Probab=97.75  E-value=3.8e-05  Score=66.73  Aligned_cols=74  Identities=19%  Similarity=0.204  Sum_probs=47.6

Q ss_pred             hhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh-CcCcch-----hhhccCCCCC-CCCCCCCCc
Q 027661          140 EVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTE-----YVVQDLNLNP-KLPFEDNSF  209 (220)
Q Consensus       140 ~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~-----~~VqDLN~~p-~LPFeDnSF  209 (220)
                      +.++-  +||.+|||+|||   +..|+.+.++.++|+|+|.+++||+. ..+..+     .+..|.+... ..++. ++|
T Consensus        66 ~~l~i--~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~  142 (226)
T PRK04266         66 KNFPI--KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKV  142 (226)
T ss_pred             hhCCC--CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccC
Confidence            34443  369999999999   78888777766899999999998772 222221     1223433210 12333 569


Q ss_pred             ceEEEee
Q 027661          210 DVITNVC  216 (220)
Q Consensus       210 DaVtcsv  216 (220)
                      |+|++..
T Consensus       143 D~i~~d~  149 (226)
T PRK04266        143 DVIYQDV  149 (226)
T ss_pred             CEEEECC
Confidence            9999754

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.74  E-value=0.0001  Score=66.82  Aligned_cols=67  Identities=19%  Similarity=0.362  Sum_probs=50.4

Q ss_pred             CCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHhh--CcCcc-hhhhccCCCCCCCCCCCCCcceEEEeeeec
Q 027661          149 GVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELKR--NPVLT-EYVVQDLNLNPKLPFEDNSFDVITNVCKTH  219 (220)
Q Consensus       149 G~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELaa--N~rL~-~~~VqDLN~~p~LPFeDnSFDaVtcsvSVd  219 (220)
                      ..-|||++||.   ++-|-++  .-..+|+|++++||+.  ...++ +.+.+|+.  .-|||...+||+||..-+||
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG--~GlpfrpGtFDg~ISISAvQ  123 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMG--EGLPFRPGTFDGVISISAVQ  123 (270)
T ss_pred             CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecC--CCCCCCCCccceEEEeeeee
Confidence            56899999993   3445432  1478999999999994  44444 44557766  57899999999999887776

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.74  E-value=2.5e-05  Score=65.24  Aligned_cols=95  Identities=16%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             CcCCCCccCCCCHHHH---HHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCc
Q 027661          116 FYETPRFVTHIDDPAI---AALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVL  188 (220)
Q Consensus       116 FY~~PRfVtHIDd~ai---~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL  188 (220)
                      -|..+-++.|+=...+   +.+.+...+.++....++.+|||+|||.+..   +.+.  ..+|+|+|+|++++.. +.++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~   97 (219)
T TIGR02021        20 IYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRA   97 (219)
T ss_pred             hhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH
Confidence            4555666777555333   2333333344442112478999999995544   4332  3589999999999983 5554


Q ss_pred             chh--------hhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          189 TEY--------VVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       189 ~~~--------~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ...        .+.|+.   .+|   ++||+|++...+
T Consensus        98 ~~~~~~~~i~~~~~d~~---~~~---~~fD~ii~~~~l  129 (219)
T TIGR02021        98 QGRDVAGNVEFEVNDLL---SLC---GEFDIVVCMDVL  129 (219)
T ss_pred             HhcCCCCceEEEECChh---hCC---CCcCEEEEhhHH
Confidence            322        112221   233   899999987543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.73  E-value=2.4e-05  Score=72.64  Aligned_cols=68  Identities=21%  Similarity=0.365  Sum_probs=47.8

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCcCcch------hhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTE------YVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~rL~~------~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||-+.+   |.+.  ..+|+|+|+|+++++.+..+..      +...|++. ..+||++++||+|+|..++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~~~fD~I~~~~~l  113 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESINGHYKNVKFMCADVTS-PDLNISDGSVDLIFSNWLL  113 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccc-cccCCCCCCEEEEehhhhH
Confidence            477999999995544   5443  3699999999999985432221      22234432 2578999999999998654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.71  E-value=2.4e-05  Score=70.25  Aligned_cols=67  Identities=19%  Similarity=0.310  Sum_probs=48.0

Q ss_pred             CCCeEeeeccchhhccCCC-CCCCcEEEecCCHHHHh-hCcCcchhhhccC---CCC-CCCCCCCCCcceEEE
Q 027661          148 PGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELK-RNPVLTEYVVQDL---NLN-PKLPFEDNSFDVITN  214 (220)
Q Consensus       148 pG~~VLDLccSWvSHLP~~-v~~~~VVGLGmN~eELa-aN~rL~~~~VqDL---N~~-p~LPFeDnSFDaVtc  214 (220)
                      +|..|||+|||.+..+-+- ....+|+|.|.|++++. ++.++..+-+.++   +.+ .++|+.+++||+|+|
T Consensus       182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~  254 (329)
T TIGR01177       182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIAT  254 (329)
T ss_pred             CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEE
Confidence            5889999999977763221 12368999999999998 3555655543332   222 468888999999998

This family is found exclusively in the Archaea.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.69  E-value=8.3e-05  Score=60.31  Aligned_cols=68  Identities=26%  Similarity=0.435  Sum_probs=45.8

Q ss_pred             CCCeEeeeccchhh---ccCCCCCC-CcEEEecCCHHHHhh-CcCcc-----hhhhccCCCCCCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQ-DRIVGMGMNEEELKR-NPVLT-----EYVVQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~-~~VVGLGmN~eELaa-N~rL~-----~~~VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      ++.+|||+|||.+.   ++...... .+++|+|.|++.++. +.++.     .+...|+   .++|+++++||+|+|..+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~i~~~~~  115 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA---EALPFEDNSFDAVTIAFG  115 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecch---hcCCCCCCcEEEEEEeee
Confidence            58899999999443   33333322 589999999998874 44332     1122333   256788899999999876


Q ss_pred             e
Q 027661          218 T  218 (220)
Q Consensus       218 V  218 (220)
                      +
T Consensus       116 ~  116 (223)
T TIGR01934       116 L  116 (223)
T ss_pred             e
Confidence            4

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.69  E-value=7.6e-05  Score=68.15  Aligned_cols=69  Identities=12%  Similarity=0.045  Sum_probs=43.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCC---CCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLN---PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~---p~LPFeDnSFDaVtcsvS  217 (220)
                      +|.+|||||||.+.-   +.+.  ..+|+|+|+|++||+ ++.+..+....+   .|..   ..++..+++||+|+|...
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v  221 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV  221 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence            478999999996543   4332  258999999999998 355443321110   1110   123334789999999765


Q ss_pred             e
Q 027661          218 T  218 (220)
Q Consensus       218 V  218 (220)
                      +
T Consensus       222 L  222 (315)
T PLN02585        222 L  222 (315)
T ss_pred             E
Confidence            3

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.68  E-value=5e-05  Score=70.50  Aligned_cols=84  Identities=21%  Similarity=0.334  Sum_probs=49.3

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCCCC-C
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLN-P  200 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN~~-p  200 (220)
                      +++...+.+..+-+. +..  +||.+||||||||+.-   +.+.. ..+|+|+|+|+++++ ++.+.....++-...+ .
T Consensus       148 L~~Aq~~k~~~l~~~-l~l--~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~  223 (383)
T PRK11705        148 LEEAQEAKLDLICRK-LQL--KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYR  223 (383)
T ss_pred             HHHHHHHHHHHHHHH-hCC--CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchh
Confidence            444444444443333 322  3689999999997765   33322 258999999999998 4555432111101111 1


Q ss_pred             CCCCCCCCcceEEEee
Q 027661          201 KLPFEDNSFDVITNVC  216 (220)
Q Consensus       201 ~LPFeDnSFDaVtcsv  216 (220)
                      .+   +++||+|++..
T Consensus       224 ~l---~~~fD~Ivs~~  236 (383)
T PRK11705        224 DL---NGQFDRIVSVG  236 (383)
T ss_pred             hc---CCCCCEEEEeC
Confidence            12   57999998753

>PRK14967 putative methyltransferase; Provisional

Probab=97.64  E-value=6.7e-05  Score=63.38  Aligned_cols=67  Identities=16%  Similarity=0.187  Sum_probs=42.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--hhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||.+..   +... ...+|+|+|+|+++++. +.++...  -+.-.+.+..-++++++||+|+|.
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~n  108 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSN  108 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEEC
Confidence            478999999995443   3332 33599999999999972 3322211  112222333334678899999985

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.60  E-value=4.3e-05  Score=63.10  Aligned_cols=68  Identities=15%  Similarity=0.168  Sum_probs=43.8

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhh-ccCCCC-CCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV-QDLNLN-PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V-qDLN~~-p~LPFeDnSFDaVtcsvS  217 (220)
                      ++.+|||+|||.+.   ++.+.  ..+|+|+|+++++++. +.++..... ..++.. ..++..+++||.|+|...
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~  136 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDV  136 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcch
Confidence            47899999999655   34332  2479999999999983 444433211 011110 236667899999998654

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.60  E-value=2.1e-05  Score=73.97  Aligned_cols=68  Identities=19%  Similarity=0.346  Sum_probs=47.8

Q ss_pred             CCCCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhc---cCCCC-CCCC-CCCCCcceEEE
Q 027661          147 TPGVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLN-PKLP-FEDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~-p~LP-FeDnSFDaVtc  214 (220)
                      ++|.+|||+|||.+   .|+.+.++ .++|+++|+|+++|+. +.++...-+.   -.+.+ ..+| +.+++||+|+|
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence            35899999999977   67766553 3799999999999984 5555543222   12222 2344 56789999996

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.52  E-value=8.6e-05  Score=62.40  Aligned_cols=70  Identities=11%  Similarity=0.059  Sum_probs=44.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHHh-hCcCcchhhhcc---CCCCC-CCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLNP-KLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~p-~LPFeDnSFDaVtcsvS  217 (220)
                      +|.+|||+|||++..   +.+..+ .++|+|+|.++++++ ++.++.+.-..+   +..+. ..+...+.||+|++...
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~  155 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAA  155 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcCC
Confidence            589999999996554   444333 267999999999998 355554432211   11111 22334578999998754

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.51  E-value=0.00015  Score=59.39  Aligned_cols=89  Identities=9%  Similarity=0.029  Sum_probs=51.8

Q ss_pred             ccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hc
Q 027661          122 FVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQ  194 (220)
Q Consensus       122 fVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---Vq  194 (220)
                      .+....+..++.+-+...  ++    ++.+|||+|||.+.+   +.......+|+|+|.|+++++. +..+..+.   ++
T Consensus        11 ~~~~~~~~~r~~~~~~l~--~~----~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~   84 (187)
T PRK08287         11 KVPMTKEEVRALALSKLE--LH----RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNID   84 (187)
T ss_pred             CCCCchHHHHHHHHHhcC--CC----CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeE
Confidence            344556666654433331  22    378999999996654   3333333699999999998873 33332221   11


Q ss_pred             cCCCCCCCCCCCCCcceEEEeee
Q 027661          195 DLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       195 DLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      -++.+...+++ .+||+|++..+
T Consensus        85 ~~~~d~~~~~~-~~~D~v~~~~~  106 (187)
T PRK08287         85 IIPGEAPIELP-GKADAIFIGGS  106 (187)
T ss_pred             EEecCchhhcC-cCCCEEEECCC
Confidence            12222223443 58999998643

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.49  E-value=6.1e-05  Score=64.72  Aligned_cols=68  Identities=10%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh-cc---CCCC-CCC-CCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV-QD---LNLN-PKL-PFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V-qD---LN~~-p~L-PFeDnSFDaVtcsvS  217 (220)
                      ++.+|||+|||.+..   +.+.  ..+|+|+|+|+++++. +.++.+.-+ .+   +..+ .++ ++.+++||+|+|...
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v  121 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV  121 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence            367999999996654   5442  3699999999999983 555443211 11   1111 123 467899999999765

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.48  E-value=9.4e-05  Score=60.63  Aligned_cols=71  Identities=27%  Similarity=0.408  Sum_probs=44.6

Q ss_pred             CCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhh-ccCC---CC-CCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVV-QDLN---LN-PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~V-qDLN---~~-p~LPFeDnSFDaVtcsvS  217 (220)
                      ++.+|||+|||.+.   ++..... ..+|+|+|.+++.++. +.++..... ..++   .+ ..+|+++++||+|+|..+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            47899999999433   2222221 3699999999999883 444432100 0011   11 246788899999998765


Q ss_pred             e
Q 027661          218 T  218 (220)
Q Consensus       218 V  218 (220)
                      +
T Consensus       131 l  131 (239)
T PRK00216        131 L  131 (239)
T ss_pred             c
Confidence            4

>PRK06922 hypothetical protein; Provisional

Probab=97.48  E-value=3e-05  Score=77.88  Aligned_cols=65  Identities=22%  Similarity=0.284  Sum_probs=45.5

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh------hhccCCCCCCCC--CCCCCcceEEEee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY------VVQDLNLNPKLP--FEDNSFDVITNVC  216 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~------~VqDLN~~p~LP--FeDnSFDaVtcsv  216 (220)
                      |.+|||+|||.+..   +.......+|+|+|+|+++++. +.++...      ...|.   ..||  |++++||+|+++.
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa---~dLp~~fedeSFDvVVsn~  495 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDA---INLSSSFEKESVDTIVYSS  495 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcch---HhCccccCCCCEEEEEEch
Confidence            78999999996543   4444445799999999999983 4333221      11222   2467  8999999999874

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.48  E-value=0.00013  Score=68.03  Aligned_cols=68  Identities=24%  Similarity=0.265  Sum_probs=46.1

Q ss_pred             CCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhc----cCCCC-CCCCC--CCCCcceEEE
Q 027661          147 TPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQ----DLNLN-PKLPF--EDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~Vq----DLN~~-p~LPF--eDnSFDaVtc  214 (220)
                      ++|.+|||+|||-+   .|+.+.++.++|+|+|.++++|+. +.++...-+.    ....+ ..+++  ++++||+|+|
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll  315 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL  315 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence            36899999999944   676655556799999999999984 5555443221    11112 22333  6789999996

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.48  E-value=8.6e-05  Score=68.06  Aligned_cols=72  Identities=11%  Similarity=0.003  Sum_probs=46.6

Q ss_pred             CCCeEeeeccchh---hccCCCCCC-CcEEEecCCHHHHh-hCcCcchhh---hccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWV---SHFPPGYKQ-DRIVGMGMNEEELK-RNPVLTEYV---VQDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWv---SHLP~~v~~-~~VVGLGmN~eELa-aN~rL~~~~---VqDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      +|.+|||+|||.+   .++.+.++. ++|+|+|.++++++ ++.++...-   +.....+ .+.+.++.+||+|++++++
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~  159 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGV  159 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCch
Confidence            5889999999943   345444432 58999999999987 344443321   1112222 2344556789999998775


Q ss_pred             c
Q 027661          219 H  219 (220)
Q Consensus       219 d  219 (220)
                      +
T Consensus       160 ~  160 (322)
T PRK13943        160 D  160 (322)
T ss_pred             H
Confidence            3

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=97.46  E-value=4.9e-05  Score=66.51  Aligned_cols=68  Identities=18%  Similarity=0.176  Sum_probs=45.9

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhh---ccCCCC-CCCCCCCCCcceEEE
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVV---QDLNLN-PKLPFEDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~-p~LPFeDnSFDaVtc  214 (220)
                      +||.+|||+|||   ...|+...++. ++|+++|.|+++++. ..++...-+   +-.+.+ ..++...++||+|++
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            368999999999   55566554443 799999999999983 555544322   222222 234555667999997

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.46  E-value=8.1e-05  Score=68.22  Aligned_cols=65  Identities=18%  Similarity=0.301  Sum_probs=43.2

Q ss_pred             CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCCCCCCCCCCC-------CCcceEEEe
Q 027661          149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLNPKLPFED-------NSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN~~p~LPFeD-------nSFDaVtcs  215 (220)
                      |++|||++||   ..-||.+.  ...|+|+|.++++.+ +|.....-.+.+.+-.-+|-|++       ..||+|+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeH
Confidence            7899999999   55567663  279999999999999 46653333334443222232222       229999996

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.46  E-value=7.4e-05  Score=70.04  Aligned_cols=67  Identities=15%  Similarity=0.305  Sum_probs=45.2

Q ss_pred             CCCCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhh---ccCCCCC-CCCCCCCCcceEEE
Q 027661          147 TPGVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLNP-KLPFEDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~p-~LPFeDnSFDaVtc  214 (220)
                      .+|.+|||+|||.+   .|+.+.+. .++|+|+|+|+++++. +.++...-+   +-.+.+. +++ ++++||+|++
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~  324 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILL  324 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEE
Confidence            35899999999966   46655443 3699999999999984 555544322   1122222 233 5789999996

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.46  E-value=1.1e-05  Score=58.99  Aligned_cols=67  Identities=18%  Similarity=0.177  Sum_probs=37.3

Q ss_pred             eeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCCC-C--CCCCCCCcceEEEeeeec
Q 027661          153 LDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLNP-K--LPFEDNSFDVITNVCKTH  219 (220)
Q Consensus       153 LDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~p-~--LPFeDnSFDaVtcsvSVd  219 (220)
                      ||++||.+..   +.+.....+++|+|+|+++|+ ++.++.+...+.   ++... .  .+...++||+|++...++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence            8999996655   333344589999999999996 588887754322   22221 1  112227999999986543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.46  E-value=0.00017  Score=63.53  Aligned_cols=37  Identities=16%  Similarity=0.215  Sum_probs=26.8

Q ss_pred             CCCeEeeeccchhh-----------ccCCCCC-CCcEEEecCCHHHHhh
Q 027661          148 PGVSILDLCSSWVS-----------HFPPGYK-QDRIVGMGMNEEELKR  184 (220)
Q Consensus       148 pG~~VLDLccSWvS-----------HLP~~v~-~~~VVGLGmN~eELaa  184 (220)
                      ++.+|||++||.+-           ++|.... ..+|+|.|+|+++|+.
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~  147 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEK  147 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHH
Confidence            36799999999663           1333111 2589999999999993

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.46  E-value=8e-05  Score=69.60  Aligned_cols=69  Identities=22%  Similarity=0.226  Sum_probs=46.9

Q ss_pred             CCCCeEeeeccch---hhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhh---ccCCCC-CCCC----CCCCCcceEE
Q 027661          147 TPGVSILDLCSSW---VSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVV---QDLNLN-PKLP----FEDNSFDVIT  213 (220)
Q Consensus       147 ~pG~~VLDLccSW---vSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~-p~LP----FeDnSFDaVt  213 (220)
                      ++|.+|||+|||-   ..|+.+.++. ++|+++|.|+++++. ..++...-+   .-.+.+ .+++    +.+++||+|+
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl  330 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL  330 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence            3689999999994   4677665443 799999999999984 555544322   222222 1333    6678999999


Q ss_pred             Ee
Q 027661          214 NV  215 (220)
Q Consensus       214 cs  215 (220)
                      |-
T Consensus       331 ~D  332 (434)
T PRK14901        331 LD  332 (434)
T ss_pred             Ee
Confidence            73

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.42  E-value=5.8e-05  Score=64.20  Aligned_cols=67  Identities=15%  Similarity=0.305  Sum_probs=42.9

Q ss_pred             CCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhhCcCcchhhhccCCCCCCC-----CCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~L-----PFeDnSFDaVtcsvS  217 (220)
                      +|.+|||||||   |..++.+.++. ++|+|+|+++  +...+.+ ++...|+.....+     ++.+.+||+|+|..+
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~--~~~~~~v-~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~  126 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP--MDPIVGV-DFLQGDFRDELVLKALLERVGDSKVQVVMSDMA  126 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc--ccCCCCc-EEEecCCCChHHHHHHHHHhCCCCCCEEecCCC
Confidence            48899999999   55566665543 7999999987  2222222 1222343332111     477899999998653

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=97.41  E-value=7.5e-05  Score=61.96  Aligned_cols=62  Identities=18%  Similarity=0.314  Sum_probs=41.0

Q ss_pred             eEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchh--------hhccCCCCCCCCCCCCCcceEEEee
Q 027661          151 SILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       151 ~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +|||++|||+.   ++.+..+..+|+|+|+|+++++ ++.++.+.        ...|..   +.|+++ +||+|++..
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~---~~~~~~-~fD~I~~~~   75 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA---KDPFPD-TYDLVFGFE   75 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc---cCCCCC-CCCEeehHH
Confidence            69999999766   3444333468999999999988 35554331        122322   336654 899998753

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.41  E-value=9.5e-05  Score=60.66  Aligned_cols=65  Identities=17%  Similarity=0.270  Sum_probs=40.6

Q ss_pred             CCCeEeeeccchhh---ccCCCC-CCCcEEEecCCHHHHhhCcCcchhhhccCCCCC---CC--CCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVS---HFPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNP---KL--PFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v-~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p---~L--PFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||++.   ++.... +.++|+|+|+|+++  ..+.++ +...|+....   .+  .+++++||+|+|.
T Consensus        32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--~~~~i~-~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~  105 (188)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--PIENVD-FIRGDFTDEEVLNKIRERVGDDKVDVVMSD  105 (188)
T ss_pred             CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--cCCCce-EEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence            48899999999654   454443 23689999999865  112221 2223443321   11  2568899999984

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=97.35  E-value=0.00024  Score=59.35  Aligned_cols=67  Identities=18%  Similarity=0.189  Sum_probs=43.0

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCCCCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +.+|||+|||.+..   +....+..+|+|+|.|+++++. +..+...-   ++-.+.+..-++++++||+|+|.
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~n  161 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSN  161 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEEC
Confidence            56899999996654   3333334599999999999983 43333221   11122222225678999999983

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.35  E-value=0.00014  Score=65.55  Aligned_cols=66  Identities=20%  Similarity=0.246  Sum_probs=40.8

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhc---cCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQ---DLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~Vq---DLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||++||-++=   ++.  -...|+|.|++++.+. +...-.+..+.   ..+..-+|-.+..+||+|||-
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr--~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLAR--LGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHH--CCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEh
Confidence            389999999994432   222  1269999999999998 33222222121   111112333444899999994

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.34  E-value=0.00029  Score=60.86  Aligned_cols=66  Identities=18%  Similarity=0.231  Sum_probs=42.9

Q ss_pred             CCCeEeeeccchhhcc--CCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSHL--P~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +|.+|||+|||.+...  -...+..+|+|+|+|+++++ ++.++...   ++.....++..|.+||.|+|..
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~---~~~~~~~~~~~~~~fD~Vvani  187 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN---GVELNVYLPQGDLKADVIVANI  187 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc---CCCceEEEccCCCCcCEEEEcC
Confidence            3889999999966441  11223457999999999998 34444332   1212234555566899999854

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.33  E-value=9.6e-05  Score=61.72  Aligned_cols=63  Identities=19%  Similarity=0.230  Sum_probs=39.1

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh-------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY-------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~-------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      |.+|||+|||.+..   +......++|+|+|.|+++++ ++..+.+.       ...|..   +++ .+++||+|+|.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~---~~~-~~~~fD~I~s~  116 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAE---DFQ-HEEQFDVITSR  116 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchh---hcc-ccCCccEEEeh
Confidence            78999999997642   222122368999999999776 23332221       112222   233 36899999874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.30  E-value=0.00023  Score=66.66  Aligned_cols=80  Identities=18%  Similarity=0.241  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcch-------hhhccCCCC
Q 027661          131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTE-------YVVQDLNLN  199 (220)
Q Consensus       131 i~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~-------~~VqDLN~~  199 (220)
                      -+.|.+.-.+.+..  ++|.+|||||||.+..   +....  .+|+|+|.|+++++ ++..+..       +...|....
T Consensus       282 ~e~l~~~vl~~l~~--~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~  357 (443)
T PRK13168        282 NQKMVARALEWLDP--QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED  357 (443)
T ss_pred             HHHHHHHHHHHhcC--CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence            34444433344432  3588999999995544   44432  69999999999998 3333221       222333322


Q ss_pred             -CCCCCCCCCcceEEE
Q 027661          200 -PKLPFEDNSFDVITN  214 (220)
Q Consensus       200 -p~LPFeDnSFDaVtc  214 (220)
                       .++|+++++||+|++
T Consensus       358 l~~~~~~~~~fD~Vi~  373 (443)
T PRK13168        358 FTDQPWALGGFDKVLL  373 (443)
T ss_pred             hhhhhhhcCCCCEEEE
Confidence             356788899999986

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.27  E-value=0.00027  Score=65.96  Aligned_cols=68  Identities=19%  Similarity=0.310  Sum_probs=43.5

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCCC-CCC--CCCCCcceEEE
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLNP-KLP--FEDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~p-~LP--FeDnSFDaVtc  214 (220)
                      ++|.+|||+|||   ...|+.+....++|+|+|.|+++++. ..++...-  +.-++.+. +++  +++++||.|+|
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~  319 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILL  319 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEE
Confidence            358999999999   44566554434799999999999983 44433321  11112221 222  45789999994

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=97.27  E-value=0.00024  Score=66.63  Aligned_cols=92  Identities=12%  Similarity=0.084  Sum_probs=55.9

Q ss_pred             cccCcCCCCccC--CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHhh-Cc
Q 027661          113 DSLFYETPRFVT--HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELKR-NP  186 (220)
Q Consensus       113 D~~FY~~PRfVt--HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELaa-N~  186 (220)
                      +-.|.+.|-.-.  +||.+.+     ++-+.||..  .+.+|||||||.   ...+.......+|+|+|.|+.+++. +.
T Consensus       198 ~~~~~~~~gVFs~~~LD~Gtr-----llL~~lp~~--~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~  270 (378)
T PRK15001        198 DWTIHNHANVFSRTGLDIGAR-----FFMQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRL  270 (378)
T ss_pred             eEEEEecCCccCCCCcChHHH-----HHHHhCCcc--cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            445555555443  4887754     466677763  356999999993   3334333333699999999999983 33


Q ss_pred             Ccchh----------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          187 VLTEY----------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       187 rL~~~----------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      .+...          ...|.-.    .+++.+||+|+|.
T Consensus       271 N~~~n~~~~~~~v~~~~~D~l~----~~~~~~fDlIlsN  305 (378)
T PRK15001        271 NVETNMPEALDRCEFMINNALS----GVEPFRFNAVLCN  305 (378)
T ss_pred             HHHHcCcccCceEEEEEccccc----cCCCCCEEEEEEC
Confidence            33211          1122211    2345689999994

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.25  E-value=7.9e-05  Score=61.97  Aligned_cols=69  Identities=12%  Similarity=0.101  Sum_probs=45.4

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc---CCCCC-CC---CCCCCCcceEEEeee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD---LNLNP-KL---PFEDNSFDVITNVCK  217 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~p-~L---PFeDnSFDaVtcsvS  217 (220)
                      +.+|||||||.+..   +.......+|+|+|+++++++. +.++...-.++   ++.+. ++   .+++++||.|++.+.
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p   96 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP   96 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence            56999999995554   4444444799999999999984 44443321111   22221 22   267789999998764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.23  E-value=0.00043  Score=58.99  Aligned_cols=68  Identities=16%  Similarity=0.151  Sum_probs=41.6

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcc---hhhhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLT---EYVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~---~~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||+|||.+.   ++.......+|+|.|.|++.++. +..+.   ..-++-.+.+..-|+.+++||+|+|.
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~n  182 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSN  182 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEEC
Confidence            47799999999443   33333334699999999998883 33322   00111122222234457899999983

>PRK14968 putative methyltransferase; Provisional

Probab=97.22  E-value=0.00027  Score=56.23  Aligned_cols=66  Identities=17%  Similarity=0.244  Sum_probs=41.5

Q ss_pred             CCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc-----CCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD-----LNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD-----LN~~p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||   +..++...  ..+|+|+|.|+++++ ++..+...-.++     ++.+..-++.+++||+|++.
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n   97 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFN   97 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEEC
Confidence            47899999999   44445443  479999999999987 333332211111     11122225666799999874

>TIGR00477 tehB tellurite resistance protein TehB

Probab=97.21  E-value=0.00025  Score=59.14  Aligned_cols=63  Identities=13%  Similarity=0.114  Sum_probs=41.0

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh------hccCCCCCCCCCCCCCcceEEEeee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV------VQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~------VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      +.+|||+|||++..   +.+.  ..+|+|+|+|+++++. +.+..+.-      +.|++   .+|++ ++||+|+|...
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~---~~~~~-~~fD~I~~~~~  103 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDIN---AAALN-EDYDFIFSTVV  103 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccch---hcccc-CCCCEEEEecc
Confidence            46999999996664   5442  3599999999999984 33322211      11221   34554 68999998754

Part of a tellurite-reducing operon tehA and tehB

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.20  E-value=0.00037  Score=58.07  Aligned_cols=70  Identities=11%  Similarity=0.073  Sum_probs=43.5

Q ss_pred             CCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCC---CCCCCCC-CCCCcceEEEeeee
Q 027661          147 TPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLN---LNPKLPF-EDNSFDVITNVCKT  218 (220)
Q Consensus       147 ~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN---~~p~LPF-eDnSFDaVtcsvSV  218 (220)
                      ++|.+|||+|||.+.   ++....  ++|+|+|.++++++ ++.++..+-..+++   .+..-.+ ++++||+|++..++
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  154 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA  154 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence            358999999999543   243322  58999999999887 35555443221111   1111112 35789999987653

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.16  E-value=0.00027  Score=62.63  Aligned_cols=67  Identities=12%  Similarity=0.014  Sum_probs=42.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh----ccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV----QDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V----qDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +|.+|||+|||.+..   +. ..+..+|+|+|+++.+++. +..+....+    .....+ .+++.+++||+|+|..
T Consensus       159 ~g~~VLDvGcGsG~lai~aa-~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~-~~~~~~~~fDlVvan~  233 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAAL-KLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY-LEQPIEGKADVIVANI  233 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHH-HcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc-cccccCCCceEEEEec
Confidence            488999999996543   21 2334699999999999983 333322111    111111 3455678999999854

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.15  E-value=0.00071  Score=62.31  Aligned_cols=67  Identities=28%  Similarity=0.628  Sum_probs=40.6

Q ss_pred             CCCeEeeeccc-------hhhccCCCCCCCcEEEecCCHHHHh-hCcCcch-------------hhhccCCCC-------
Q 027661          148 PGVSILDLCSS-------WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTE-------------YVVQDLNLN-------  199 (220)
Q Consensus       148 pG~~VLDLccS-------WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~-------------~~VqDLN~~-------  199 (220)
                      ++.+|||||||       |..+     +-.++||+|++.+.|+ +..|..+             +....+..+       
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-----~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~  136 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-----KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR  136 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-----T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred             CCCeEEEecCCCchhHHHHHhc-----CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence            68999999999       6554     2369999999999998 4666621             111112221       


Q ss_pred             CCCCCCCCCcceEEEeeeec
Q 027661          200 PKLPFEDNSFDVITNVCKTH  219 (220)
Q Consensus       200 p~LPFeDnSFDaVtcsvSVd  219 (220)
                      ..++.....||+|.|-|++.
T Consensus       137 ~~~~~~~~~FDvVScQFalH  156 (331)
T PF03291_consen  137 EKLPPRSRKFDVVSCQFALH  156 (331)
T ss_dssp             CTSSSTTS-EEEEEEES-GG
T ss_pred             hhccccCCCcceeehHHHHH
Confidence            23445557999999998863

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.13  E-value=0.00029  Score=62.69  Aligned_cols=67  Identities=13%  Similarity=0.185  Sum_probs=40.8

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhh----hccCCCCCCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYV----VQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +.+|||+|||.+..   +.......+|+|+|.|++.++ ++..+...-    +.-++.+..-++++++||+|+|.
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N  196 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN  196 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence            56899999995543   333233359999999999998 333332221    11122222224456789999983

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.09  E-value=0.00035  Score=65.35  Aligned_cols=67  Identities=22%  Similarity=0.363  Sum_probs=42.8

Q ss_pred             CCCeEeeeccchh---hccCCCC-CCCcEEEecCCHHHHhh-CcCcchhhh---ccCCCCC-CC--CCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWV---SHFPPGY-KQDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLNP-KL--PFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWv---SHLP~~v-~~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~p-~L--PFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||.+   .|+.+.+ ..++|+|+|+|+++++. +.++...-+   .-++.+. ++  +++ ++||+|+|-
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D  327 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVD  327 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEc
Confidence            5889999999944   4665544 24799999999999873 444433221   1122221 22  233 789999973

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.08  E-value=0.00052  Score=63.12  Aligned_cols=95  Identities=13%  Similarity=0.090  Sum_probs=54.4

Q ss_pred             cccCcCCCCcc--CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-Cc
Q 027661          113 DSLFYETPRFV--THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NP  186 (220)
Q Consensus       113 D~~FY~~PRfV--tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~  186 (220)
                      +-.++..|-.-  .|+|.+..     +.-+.++..  ...+|||||||++..   +.+.....+|+|+|.|+.+|+. ..
T Consensus       166 ~l~i~~~pgvFs~~~lD~gt~-----lLl~~l~~~--~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~  238 (342)
T PRK09489        166 GLTVKTLPGVFSRDGLDVGSQ-----LLLSTLTPH--TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRA  238 (342)
T ss_pred             CEEEEeCCCCCCCCCCCHHHH-----HHHHhcccc--CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            44555555543  45887744     333444431  245899999996654   4443333589999999999983 33


Q ss_pred             Ccchhhh--ccCCCCCCCCCCCCCcceEEEe
Q 027661          187 VLTEYVV--QDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       187 rL~~~~V--qDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      .+....+  +-...+. +...+++||.|+|.
T Consensus       239 nl~~n~l~~~~~~~D~-~~~~~~~fDlIvsN  268 (342)
T PRK09489        239 TLAANGLEGEVFASNV-FSDIKGRFDMIISN  268 (342)
T ss_pred             HHHHcCCCCEEEEccc-ccccCCCccEEEEC
Confidence            3322111  0011111 22236789999995

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.07  E-value=0.00019  Score=63.26  Aligned_cols=63  Identities=14%  Similarity=0.173  Sum_probs=41.9

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch------hhhccCCCCCCCCCCCCCcceEEEeee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE------YVVQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~------~~VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      +.+|||+|||.+..   +...  ..+|+|+|.|+++++. +.+..+      ..+.|++.   .++ +++||+|+|...
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~---~~~-~~~fD~I~~~~v  193 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS---ASI-QEEYDFILSTVV  193 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc---ccc-cCCccEEEEcch
Confidence            34999999997664   4432  3599999999999873 333322      12234443   233 789999998764

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.06  E-value=0.0006  Score=61.58  Aligned_cols=66  Identities=14%  Similarity=0.209  Sum_probs=41.0

Q ss_pred             CeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhh----hccCCCCCCCCCCCCCcceEEEe
Q 027661          150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYV----VQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       150 ~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      .+|||+|||.+..   +.......+|+|+|+|++.++ ++..+...-    ++-++.+..-++++++||+|+|.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC
Confidence            6899999996554   433333469999999999998 333333221    11122222113446789999984

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.04  E-value=0.00058  Score=56.73  Aligned_cols=70  Identities=14%  Similarity=0.056  Sum_probs=42.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHHhh-CcCcchhh----hccCCCCC-C-CCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLNP-K-LPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~p-~-LPFeDnSFDaVtcsv  216 (220)
                      +|..|||+|||.+..   +....+ .++|+|+|.|+++++. +.++..+-    +..++.+. + ++..+++||+|++..
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~  119 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG  119 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence            589999999996644   222232 3699999999999882 33322221    11122221 2 344457899999855


Q ss_pred             e
Q 027661          217 K  217 (220)
Q Consensus       217 S  217 (220)
                      +
T Consensus       120 ~  120 (198)
T PRK00377        120 G  120 (198)
T ss_pred             C
Confidence            4

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.00  E-value=0.00059  Score=55.47  Aligned_cols=63  Identities=14%  Similarity=0.033  Sum_probs=38.6

Q ss_pred             CCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCCC-CCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLNP-KLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~p-~LPFeDnSFDaVtcs  215 (220)
                      +.+|||||||.   ..++....  .+|+|+|+|+++++. +.++...-  +.-.+.+. +.  .+.+||+|++.
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~fD~Vi~n   89 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG--VRGKFDVILFN   89 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc--cCCcccEEEEC
Confidence            56899999994   44454432  289999999999883 33332211  11111121 22  24599999986

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=96.94  E-value=0.0011  Score=54.01  Aligned_cols=67  Identities=16%  Similarity=0.180  Sum_probs=41.4

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCCCCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +.+|||||||++   .++.......+|+++|.|++.++. +..+...-   ++-++.+.--++++.+||.|+|.
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~N  105 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSN  105 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE-
T ss_pred             CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEc
Confidence            679999999944   223333333479999999999983 33333321   22222333334558999999985

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=96.89  E-value=0.00012  Score=54.28  Aligned_cols=66  Identities=20%  Similarity=0.261  Sum_probs=39.4

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhh----ccCCCC-CCC--CCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVV----QDLNLN-PKL--PFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~V----qDLN~~-p~L--PFeDnSFDaVtcs  215 (220)
                      |.+|||+|||-+.-   +.... ..+|+|+|+|++-++ ++..+.....    +-.+.+ .++  ++++++||+|++.
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence            67999999993332   22222 469999999999887 3433333211    111111 122  4789999999985

...

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.86  E-value=0.00099  Score=53.93  Aligned_cols=66  Identities=9%  Similarity=0.105  Sum_probs=44.3

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-hhccCCCC-CCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-VVQDLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-~VqDLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||.+..   +.+.  ..+|+|+|.|+.+++. +.++... -++-++.+ .++++++.+||.|+..
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n   84 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGN   84 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEEC
Confidence            478999999995544   4443  3699999999999884 4444321 11222333 3667888889998764

>TIGR03438 probable methyltransferase

Probab=96.84  E-value=0.00095  Score=59.53  Aligned_cols=62  Identities=15%  Similarity=0.222  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHhh-CcCcc
Q 027661          124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELKR-NPVLT  189 (220)
Q Consensus       124 tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELaa-N~rL~  189 (220)
                      |.-.....+...+...+.+++    |.+|||||||-+.   .|-+... ..+|+|+|+|++||+. ..+|.
T Consensus        43 tr~E~~il~~~~~~ia~~~~~----~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~  109 (301)
T TIGR03438        43 TRTEAAILERHADEIAAATGA----GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALA  109 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhhCC----CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHH
Confidence            333334445555555555654    7799999999554   3433332 3589999999999983 44443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00536 hemK_fam HemK family putative methylases

Probab=96.77  E-value=0.0014  Score=57.70  Aligned_cols=67  Identities=15%  Similarity=0.209  Sum_probs=40.9

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchhh----hccCCCCCCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEYV----VQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +.+|||+|||.+.   ++.......+|+|+|.|++.++ ++..+...-    ++-...+..-++++++||+|++.
T Consensus       115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN  189 (284)
T TIGR00536       115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSN  189 (284)
T ss_pred             CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEEC
Confidence            3689999999554   3443333468999999999998 333332211    11111222235566689999873

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=96.77  E-value=0.0014  Score=60.88  Aligned_cols=83  Identities=14%  Similarity=0.155  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcch-------hhhccC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTE-------YVVQDL  196 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~-------~~VqDL  196 (220)
                      ....+.|.+.-.+.+..  +++.+||||+||.+..   +...  ..+|+|+|+|+++++ ++..+..       +...|.
T Consensus       274 ~~~~~~l~~~~~~~l~~--~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~  349 (431)
T TIGR00479       274 SGQNEKLVDRALEALEL--QGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTL  349 (431)
T ss_pred             HHHHHHHHHHHHHHhcc--CCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCH
Confidence            33444444333444432  2478999999995444   4443  258999999999998 3333322       122232


Q ss_pred             CC-CCCCCCCCCCcceEEE
Q 027661          197 NL-NPKLPFEDNSFDVITN  214 (220)
Q Consensus       197 N~-~p~LPFeDnSFDaVtc  214 (220)
                      .. .+++++++++||+|++
T Consensus       350 ~~~l~~~~~~~~~~D~vi~  368 (431)
T TIGR00479       350 ETVLPKQPWAGQIPDVLLL  368 (431)
T ss_pred             HHHHHHHHhcCCCCCEEEE
Confidence            21 1356677889999986

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=96.71  E-value=0.0015  Score=58.51  Aligned_cols=83  Identities=14%  Similarity=0.121  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchh-------hhc
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEY-------VVQ  194 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~-------~Vq  194 (220)
                      ......+.|-+.-.+.+..  .++.+|||||||.+.   ++..  ...+|+|+|.|+++++ ++..+...       ...
T Consensus       153 ~n~~~~~~l~~~v~~~l~~--~~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~  228 (315)
T PRK03522        153 TNPAVAAQLYATARDWVRE--LPPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQAL  228 (315)
T ss_pred             cCHHHHHHHHHHHHHHHHh--cCCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEc
Confidence            4444455554444444432  136799999999443   3544  2368999999999998 33333221       122


Q ss_pred             cCCCCCCCCCCCCCcceEEE
Q 027661          195 DLNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       195 DLN~~p~LPFeDnSFDaVtc  214 (220)
                      |....  ++-.++.||+|++
T Consensus       229 D~~~~--~~~~~~~~D~Vv~  246 (315)
T PRK03522        229 DSTQF--ATAQGEVPDLVLV  246 (315)
T ss_pred             CHHHH--HHhcCCCCeEEEE
Confidence            22211  1113457999986

>TIGR00478 tly hemolysin TlyA family protein

Probab=96.64  E-value=0.0056  Score=53.85  Aligned_cols=69  Identities=14%  Similarity=0.161  Sum_probs=43.3

Q ss_pred             CCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh----CcCcchhhhccCCC-CC-CCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR----NPVLTEYVVQDLNL-NP-KLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa----N~rL~~~~VqDLN~-~p-~LPFeDnSFDaVtcsvS  217 (220)
                      +|..|||++||   +...+.+. +..+|+|+|.+.+||..    |++...+-..|+.. .+ .++.+=..||+++++.+
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~  152 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI  152 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence            48899999999   44445443 44799999999988873    55543332223221 11 22333357888888764

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=96.63  E-value=0.00079  Score=56.32  Aligned_cols=68  Identities=16%  Similarity=0.104  Sum_probs=41.4

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh----hccCCCCCCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      ++.+|||||||.+..   +-..  ..+|+|+|+|++.++. +.++....    ....+...-+...++.||+|+|...
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~  123 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM  123 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence            588999999996554   3221  2579999999999873 43322110    1111111112245689999999654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.58  E-value=0.0014  Score=63.09  Aligned_cols=66  Identities=17%  Similarity=0.179  Sum_probs=41.1

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhh----ccCCCCCCCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVV----QDLNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~V----qDLN~~p~LPFeDnSFDaVtc  214 (220)
                      +.+|||+|||.+.-   +.......+|+|+|.|++.++ ++..+..+-+    .-++.+.--++++++||+|+|
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvs  212 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVS  212 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEE
Confidence            56899999995433   333334469999999999998 3443332211    112222212345678999998

>PHA03411 putative methyltransferase; Provisional

Probab=96.56  E-value=0.0018  Score=59.26  Aligned_cols=62  Identities=24%  Similarity=0.425  Sum_probs=39.3

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPFeDnSFDaVtc  214 (220)
                      +.+|||+|||.+.   ++.......+|+|+|.|+++++. +.++.+  +...|+-   +++ .+.+||+|++
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~---e~~-~~~kFDlIIs  132 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVF---EFE-SNEKFDVVIS  132 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchh---hhc-ccCCCcEEEE
Confidence            5699999999553   33332223599999999999994 333322  2223332   222 3578999998

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=96.53  E-value=0.002  Score=60.70  Aligned_cols=103  Identities=23%  Similarity=0.389  Sum_probs=71.1

Q ss_pred             CccccccCCCCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhccCC-CCCCCcEEEecCCH
Q 027661          101 KEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNE  179 (220)
Q Consensus       101 ~~~~f~R~DesdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSHLP~-~v~~~~VVGLGmN~  179 (220)
                      ..++|.+.|.  +..=|..|   .-+|+.-..++.++ ++.     ++|..|||=+||.++-|=+ .+-..+|+|.|+.+
T Consensus       161 dr~~~~~r~~--~kRPf~~p---~s~~P~lAR~mVNL-a~v-----~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~  229 (347)
T COG1041         161 DRKAFEKRDP--EKRPFFRP---GSMDPRLARAMVNL-ARV-----KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDE  229 (347)
T ss_pred             ChHHHhhcCc--ccCCccCc---CCcCHHHHHHHHHH-hcc-----ccCCEeecCcCCccHHHHhhhhcCceEeecchHH
Confidence            4455555554  23223344   55677666666555 222     3499999999998888643 23347999999999


Q ss_pred             HHHh-hCcCcchhhhcc---CCC-C-CCCCCCCCCcceEEE
Q 027661          180 EELK-RNPVLTEYVVQD---LNL-N-PKLPFEDNSFDVITN  214 (220)
Q Consensus       180 eELa-aN~rL~~~~VqD---LN~-~-p~LPFeDnSFDaVtc  214 (220)
                      .|+. +...|+.|-+.+   ++. + -+|||++++||+++|
T Consensus       230 ~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat  270 (347)
T COG1041         230 RMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT  270 (347)
T ss_pred             HHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence            9999 588888875332   233 3 589999999999987

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.48  E-value=0.0033  Score=55.39  Aligned_cols=81  Identities=10%  Similarity=0.152  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCC-C
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN-P  200 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~-p  200 (220)
                      +|...++.+-+..    ..  .+|.+|||+|||++..   +.+..  .+|+|+|.++++++. +.++.+--++-++.+ .
T Consensus        26 ~~~~i~~~i~~~l----~~--~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~   97 (272)
T PRK00274         26 IDENILDKIVDAA----GP--QPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAEDNLTIIEGDAL   97 (272)
T ss_pred             CCHHHHHHHHHhc----CC--CCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhccCceEEEEChhh
Confidence            4666666655543    21  2478999999996655   44432  489999999999994 544432111112222 2


Q ss_pred             CCCCCCCCcceEEE
Q 027661          201 KLPFEDNSFDVITN  214 (220)
Q Consensus       201 ~LPFeDnSFDaVtc  214 (220)
                      ++++++-.+|.|++
T Consensus        98 ~~~~~~~~~~~vv~  111 (272)
T PRK00274         98 KVDLSELQPLKVVA  111 (272)
T ss_pred             cCCHHHcCcceEEE
Confidence            44555433566654

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=96.39  E-value=0.0026  Score=52.47  Aligned_cols=67  Identities=18%  Similarity=0.196  Sum_probs=40.4

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchhhh---ccCCCC-CCCCCC-CCCcceEEEeee
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLN-PKLPFE-DNSFDVITNVCK  217 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~-p~LPFe-DnSFDaVtcsvS  217 (220)
                      +.+|||||||.+   .++...  ..+|+|+|.|+++++. +.++.....   .-.+.+ .++|.+ +++||+|+|...
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~  121 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV  121 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence            779999999943   334332  2469999999999874 443332111   101111 133443 489999998653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=96.35  E-value=0.0022  Score=56.10  Aligned_cols=65  Identities=14%  Similarity=0.226  Sum_probs=38.7

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh-hCcCcch----hhhccCCCCCCCCC-CCCCcceEEEe
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK-RNPVLTE----YVVQDLNLNPKLPF-EDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~----~~VqDLN~~p~LPF-eDnSFDaVtcs  215 (220)
                      +.+|||||||.+   .++.......+|+|+|.|++.++ ++..+..    +...|+-..  ++- ...+||.|++-
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~--l~~~~~~~fDlVv~N  160 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDA--LPTALRGRVDILAAN  160 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhh--cchhcCCCEeEEEEC
Confidence            458999999954   33333333358999999999998 3433332    222333211  220 13579999873

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=96.32  E-value=0.0032  Score=57.45  Aligned_cols=81  Identities=17%  Similarity=0.249  Sum_probs=50.0

Q ss_pred             HHHHHhhCCCCCCCCC-eEeeeccchhhccCCCC--CCCcEEEecCCHHHHhh---CcCcchhhh-ccCCCCCCCCCC--
Q 027661          135 TKYYSEVFPPSNTPGV-SILDLCSSWVSHFPPGY--KQDRIVGMGMNEEELKR---NPVLTEYVV-QDLNLNPKLPFE--  205 (220)
Q Consensus       135 T~lY~~~lp~~~~pG~-~VLDLccSWvSHLP~~v--~~~~VVGLGmN~eELaa---N~rL~~~~V-qDLN~~p~LPFe--  205 (220)
                      |+.|.....-  ++|. .++|+|||-+ --+..+  -+.+|||.|.|++||+.   .++.+...+ -..-.+.-.|+.  
T Consensus        21 tdw~~~ia~~--~~~h~~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~   97 (261)
T KOG3010|consen   21 TDWFKKIASR--TEGHRLAWDVGTGNG-QAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG   97 (261)
T ss_pred             HHHHHHHHhh--CCCcceEEEeccCCC-cchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC
Confidence            5566666543  3455 8999999966 211111  14789999999999994   333333222 222222235565  


Q ss_pred             CCCcceEEEeeee
Q 027661          206 DNSFDVITNVCKT  218 (220)
Q Consensus       206 DnSFDaVtcsvSV  218 (220)
                      +||.|.|||+=.+
T Consensus        98 e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   98 EESVDLITAAQAV  110 (261)
T ss_pred             CcceeeehhhhhH
Confidence            9999999997443

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=96.25  E-value=0.0045  Score=59.50  Aligned_cols=65  Identities=9%  Similarity=0.094  Sum_probs=39.7

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +.+|||||||.+..   +.......+|+|+|+|+++++ ++.++...      ...|+.. ..+| .+++||.|+|.
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e-~~l~-~~~~FDLIVSN  326 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFD-TDMP-SEGKWDIIVSN  326 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc-cccc-cCCCccEEEEC
Confidence            56999999996543   333233468999999999998 33333221      1122211 1222 24589999983

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=96.24  E-value=0.0096  Score=53.90  Aligned_cols=66  Identities=18%  Similarity=0.251  Sum_probs=46.0

Q ss_pred             CeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcch--------hhhccCCCCCCCCCCCCCcceEEEeee
Q 027661          150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTE--------YVVQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       150 ~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~--------~~VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      ..||.++||.+.-   ||. .+-.+|+++|=|+.|.+ +.++..+        +++.+...-++  ++|.|.|+|+|++.
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~--l~d~s~DtVV~Tlv  154 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ--LADGSYDTVVCTLV  154 (252)
T ss_pred             cceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc--cccCCeeeEEEEEE
Confidence            4689999998877   442 23369999999999987 3444433        23333333333  59999999999986


Q ss_pred             e
Q 027661          218 T  218 (220)
Q Consensus       218 V  218 (220)
                      +
T Consensus       155 L  155 (252)
T KOG4300|consen  155 L  155 (252)
T ss_pred             E
Confidence            4

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=96.21  E-value=0.0018  Score=53.98  Aligned_cols=84  Identities=20%  Similarity=0.293  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh------ccCCCCC------CCcEEEecCCHHHHh-hCcCcchhh
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS------HFPPGYK------QDRIVGMGMNEEELK-RNPVLTEYV  192 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS------HLP~~v~------~~~VVGLGmN~eELa-aN~rL~~~~  192 (220)
                      |.+...++|-.+-.  .    ++|..|||-|||.+.      ++-..+.      ..+++|.|.+++.+. ++..+..+.
T Consensus        12 L~~~lA~~ll~la~--~----~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag   85 (179)
T PF01170_consen   12 LRPTLAAALLNLAG--W----RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG   85 (179)
T ss_dssp             S-HHHHHHHHHHTT--------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHhC--C----CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence            45555555544321  1    258899999999333      3222221      234999999999998 466676654


Q ss_pred             hc----cCCCC-CCCCCCCCCcceEEEe
Q 027661          193 VQ----DLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       193 Vq----DLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      +.    -.+.+ .+||+.+++||+|+|-
T Consensus        86 ~~~~i~~~~~D~~~l~~~~~~~d~Ivtn  113 (179)
T PF01170_consen   86 VEDYIDFIQWDARELPLPDGSVDAIVTN  113 (179)
T ss_dssp             -CGGEEEEE--GGGGGGTTSBSCEEEEE
T ss_pred             cCCceEEEecchhhcccccCCCCEEEEC
Confidence            42    22333 4788889999999983

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK07402 precorrin-6B methylase; Provisional

Probab=96.16  E-value=0.0047  Score=51.04  Aligned_cols=43  Identities=12%  Similarity=0.100  Sum_probs=31.4

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE  190 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~  190 (220)
                      +|.+|||+|||.+.+   +....+.++|+|+|.|+++++. ++++.+
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~   86 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR   86 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            488999999996655   4332334799999999999983 554443

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=96.09  E-value=0.0068  Score=56.13  Aligned_cols=96  Identities=21%  Similarity=0.313  Sum_probs=59.0

Q ss_pred             CcccCcCCCCccCC--CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hC
Q 027661          112 PDSLFYETPRFVTH--IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RN  185 (220)
Q Consensus       112 dD~~FY~~PRfVtH--IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN  185 (220)
                      .+-.|.+.|=.-.|  ||.+     |++--+.||..  ++.+||||||||+-   -+.+..+..+|+-.|.|..-++ ++
T Consensus       127 ~~~~~~t~pGVFS~~~lD~G-----S~lLl~~l~~~--~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar  199 (300)
T COG2813         127 HELTFKTLPGVFSRDKLDKG-----SRLLLETLPPD--LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESAR  199 (300)
T ss_pred             CceEEEeCCCCCcCCCcChH-----HHHHHHhCCcc--CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHH
Confidence            44455555544444  6766     45566777763  35599999999542   2444333469999999999888 35


Q ss_pred             cCcchhhhccC---CCCCCCCCCCCCcceEEEe
Q 027661          186 PVLTEYVVQDL---NLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       186 ~rL~~~~VqDL---N~~p~LPFeDnSFDaVtcs  215 (220)
                      ..+..-.+++.   -.+.-.|-++ +||.|||-
T Consensus       200 ~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisN  231 (300)
T COG2813         200 KNLAANGVENTEVWASNLYEPVEG-KFDLIISN  231 (300)
T ss_pred             HhHHHcCCCccEEEEecccccccc-cccEEEeC
Confidence            55554333321   1112334555 99999983

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=96.07  E-value=0.0065  Score=54.71  Aligned_cols=65  Identities=29%  Similarity=0.349  Sum_probs=44.4

Q ss_pred             CCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHh---hCcCcchh------hhccCCCC-CCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELK---RNPVLTEY------VVQDLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELa---aN~rL~~~------~VqDLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      ..+|||||||-   ..-+.......+|+|+++.+++-+   +|-+++.+      ..+|++.- ...++.  +||.|||-
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~--~fD~Ii~N  122 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA--SFDLIICN  122 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc--ccCEEEeC
Confidence            67999999993   334666655579999999998766   26565543      22444443 234444  99999993

>PHA03412 putative methyltransferase; Provisional

Probab=96.06  E-value=0.0086  Score=53.88  Aligned_cols=62  Identities=24%  Similarity=0.334  Sum_probs=38.8

Q ss_pred             CCeEeeeccchhhc-------cCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvSH-------LP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +.+|||+|||.+.-       ++.. +..+|+|+|+|+.+++. +..+..  +...|+..   .++ +.+||.||+-
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~-~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~---~~~-~~~FDlIIsN  121 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYA-KPREIVCVELNHTYYKLGKRIVPEATWINADALT---TEF-DTLFDMAISN  121 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccC-CCcEEEEEECCHHHHHHHHhhccCCEEEEcchhc---ccc-cCCccEEEEC
Confidence            56999999994322       2211 12589999999999993 333322  22234322   233 5799999973

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=95.85  E-value=0.01  Score=51.83  Aligned_cols=80  Identities=11%  Similarity=0.164  Sum_probs=50.4

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-hhccCCCC-
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-VVQDLNLN-  199 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-~VqDLN~~-  199 (220)
                      +|...++.+.+...  +.    +|..|||+|||.+..   +.+.  ..+|+|+|+++++++. +.++.+. -+.-++.+ 
T Consensus        13 ~d~~~~~~iv~~~~--~~----~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~   84 (258)
T PRK14896         13 IDDRVVDRIVEYAE--DT----DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA   84 (258)
T ss_pred             CCHHHHHHHHHhcC--CC----CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEEecc
Confidence            68888888876542  22    478999999996654   4433  3589999999999984 4444321 01111222 


Q ss_pred             CCCCCCCCCcceEEEe
Q 027661          200 PKLPFEDNSFDVITNV  215 (220)
Q Consensus       200 p~LPFeDnSFDaVtcs  215 (220)
                      .+++++  +||.|++.
T Consensus        85 ~~~~~~--~~d~Vv~N   98 (258)
T PRK14896         85 LKVDLP--EFNKVVSN   98 (258)
T ss_pred             ccCCch--hceEEEEc
Confidence            244554  47887764

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=95.83  E-value=0.0048  Score=58.68  Aligned_cols=70  Identities=9%  Similarity=0.067  Sum_probs=45.9

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCCC-C--CCCCCCCcceEEEeeee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLNP-K--LPFEDNSFDVITNVCKT  218 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~p-~--LPFeDnSFDaVtcsvSV  218 (220)
                      +..+||||||.+.+   +........++|+|+++++++. ..+....-   +.-++.+. .  -+|++++||.|.+.+..
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFPd  202 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFPV  202 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCCC
Confidence            66999999996655   5554444799999999999873 33332211   11112221 1  26889999999987753

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=95.83  E-value=0.005  Score=56.32  Aligned_cols=71  Identities=13%  Similarity=0.029  Sum_probs=46.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHHh-hCcCcchh-hhccCCCCC-----CCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELK-RNPVLTEY-VVQDLNLNP-----KLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eELa-aN~rL~~~-~VqDLN~~p-----~LPFeDnSFDaVtcsv  216 (220)
                      ||..+||.+||.+.|   +-+.++ .++|+|+|.++++++ ++.+|.+. -+.-++.+.     .++-.-.+||+|++-.
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~DL   98 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLDL   98 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEECC
Confidence            688999999999888   444443 379999999999999 47777540 011111111     1221112899999877


Q ss_pred             ee
Q 027661          217 KT  218 (220)
Q Consensus       217 SV  218 (220)
                      ||
T Consensus        99 Gv  100 (296)
T PRK00050         99 GV  100 (296)
T ss_pred             Cc
Confidence            75

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.78  E-value=0.0084  Score=55.97  Aligned_cols=67  Identities=16%  Similarity=0.194  Sum_probs=42.8

Q ss_pred             CCCeEeeeccchhhcc--CCCCCCCcEEEecCCHHHHhhCcCcchhhh-----ccCCC-CCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVLTEYVV-----QDLNL-NPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSHL--P~~v~~~~VVGLGmN~eELaaN~rL~~~~V-----qDLN~-~p~LPFeDnSFDaVtcs  215 (220)
                      .|.+|||||||-+-|+  -..-+...|+|+|=+.-=+.+=.-+.++.-     .-+.. .-.||. .++||.|+|-
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~M  189 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSM  189 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEe
Confidence            3889999999988772  112255789999988766654333333221     12211 126677 7899999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.70  E-value=0.0096  Score=51.63  Aligned_cols=84  Identities=21%  Similarity=0.287  Sum_probs=57.4

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh--hccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCC-
Q 027661          124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV--SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN-  199 (220)
Q Consensus       124 tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv--SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~-  199 (220)
                      .||-......+-+-|...      +|.+++|||||-+  |--..-.+...|+|+|+.++-|+- |....++-+|+ |.- 
T Consensus        30 p~iAasM~~~Ih~Tygdi------Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi-dlLq  102 (185)
T KOG3420|consen   30 PHIAASMLYTIHNTYGDI------EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI-DLLQ  102 (185)
T ss_pred             HHHHHHHHHHHHhhhccc------cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh-heee
Confidence            456555566666666553      3889999999932  211112234689999999999994 88888887765 332 


Q ss_pred             ---CCCCCCCCCcceEEE
Q 027661          200 ---PKLPFEDNSFDVITN  214 (220)
Q Consensus       200 ---p~LPFeDnSFDaVtc  214 (220)
                         .++-+....||.+++
T Consensus       103 cdildle~~~g~fDtavi  120 (185)
T KOG3420|consen  103 CDILDLELKGGIFDTAVI  120 (185)
T ss_pred             eeccchhccCCeEeeEEe
Confidence               356666688888776

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=95.63  E-value=0.022  Score=52.63  Aligned_cols=84  Identities=21%  Similarity=0.208  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHh----hCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh-h------CcCcchhh--h
Q 027661          130 AIAALTKYYSE----VFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK-R------NPVLTEYV--V  193 (220)
Q Consensus       130 ai~~LT~lY~~----~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa-a------N~rL~~~~--V  193 (220)
                      .|..|.++..+    .+|.  .++.+|||||||.+   .-|.......+++|.|++++.++ +      ||.|...+  .
T Consensus        94 Yi~~l~dll~~~~~~~~p~--~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~  171 (321)
T PRK11727         94 YIHHLADLLAEDNGGVIPR--GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLR  171 (321)
T ss_pred             HHHHHHHHhcccccccCCC--CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEE
Confidence            34455555433    3443  24689999999953   11222222358999999999887 2      44444321  1


Q ss_pred             -ccCCCCC--CCCCCCCCcceEEEe
Q 027661          194 -QDLNLNP--KLPFEDNSFDVITNV  215 (220)
Q Consensus       194 -qDLN~~p--~LPFeDnSFDaVtcs  215 (220)
                       +......  .+-.+++.||.|+|-
T Consensus       172 ~~~~~~~i~~~i~~~~~~fDlivcN  196 (321)
T PRK11727        172 LQKDSKAIFKGIIHKNERFDATLCN  196 (321)
T ss_pred             EccchhhhhhcccccCCceEEEEeC
Confidence             1111111  112357799999983

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.60  E-value=0.025  Score=53.67  Aligned_cols=97  Identities=14%  Similarity=0.257  Sum_probs=65.5

Q ss_pred             CcCCCCccCCCCHHHHHH--HHHHHHhhCCCC-----CCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCH--HHHh
Q 027661          116 FYETPRFVTHIDDPAIAA--LTKYYSEVFPPS-----NTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNE--EELK  183 (220)
Q Consensus       116 FY~~PRfVtHIDd~ai~~--LT~lY~~~lp~~-----~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~--eELa  183 (220)
                      +--.|||.--=|...++.  |.+.+....++.     -.+|+.+||||||   |.-.|-+.  ..+|+++|-++  +.|.
T Consensus       172 ~~Gi~Rl~~p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~  249 (357)
T PRK11760        172 PMGIPRLKFPADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLM  249 (357)
T ss_pred             CCCcccccCCCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhh
Confidence            335788877777666665  457777776541     1479999999998   77776553  34999999554  2234


Q ss_pred             hCcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          184 RNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       184 aN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      .+++.+.+-..++...|.    ...||.++|=+..
T Consensus       250 ~~~~V~h~~~d~fr~~p~----~~~vDwvVcDmve  280 (357)
T PRK11760        250 DTGQVEHLRADGFKFRPP----RKNVDWLVCDMVE  280 (357)
T ss_pred             CCCCEEEEeccCcccCCC----CCCCCEEEEeccc
Confidence            577776655555554442    5789999997653

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=95.55  E-value=0.019  Score=38.29  Aligned_cols=65  Identities=23%  Similarity=0.241  Sum_probs=40.6

Q ss_pred             Eeeeccchhh--ccCCCCCC-CcEEEecCCHHHHhh-CcCcc-hhh--hccCCCC--C-CCCCCC-CCcceEEEeee
Q 027661          152 ILDLCSSWVS--HFPPGYKQ-DRIVGMGMNEEELKR-NPVLT-EYV--VQDLNLN--P-KLPFED-NSFDVITNVCK  217 (220)
Q Consensus       152 VLDLccSWvS--HLP~~v~~-~~VVGLGmN~eELaa-N~rL~-~~~--VqDLN~~--p-~LPFeD-nSFDaVtcsvS  217 (220)
                      +||++||-+.  ++...... ..++|+|++..++.. +.... ...  +.-...+  . .+||++ ..||++ +...
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~  127 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLL  127 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeee
Confidence            9999999776  55554333 389999999999985 21110 100  1111111  1 489998 599999 5544

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=95.48  E-value=0.0062  Score=52.70  Aligned_cols=83  Identities=16%  Similarity=0.278  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccc--hh----hccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCC---C
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSS--WV----SHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLN---L  198 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccS--Wv----SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN---~  198 (220)
                      ...+++.++..  +    +||++|||++||  +.    +||-..  .++|++++.+++-.+ ++.+|......++.   .
T Consensus        59 ~~~a~~l~~L~--l----~pg~~VLeIGtGsGY~aAlla~lvg~--~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g  130 (209)
T PF01135_consen   59 SMVARMLEALD--L----KPGDRVLEIGTGSGYQAALLAHLVGP--VGRVVSVERDPELAERARRNLARLGIDNVEVVVG  130 (209)
T ss_dssp             HHHHHHHHHTT--C-----TT-EEEEES-TTSHHHHHHHHHHST--TEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES
T ss_pred             HHHHHHHHHHh--c----CCCCEEEEecCCCcHHHHHHHHhcCc--cceEEEECccHHHHHHHHHHHHHhccCceeEEEc
Confidence            35555555544  4    369999999997  33    344322  268999999998887 48888765433221   1


Q ss_pred             CCCCCC-CCCCcceEEEeeeec
Q 027661          199 NPKLPF-EDNSFDVITNVCKTH  219 (220)
Q Consensus       199 ~p~LPF-eDnSFDaVtcsvSVd  219 (220)
                      +-...+ +...||+|+++.++.
T Consensus       131 dg~~g~~~~apfD~I~v~~a~~  152 (209)
T PF01135_consen  131 DGSEGWPEEAPFDRIIVTAAVP  152 (209)
T ss_dssp             -GGGTTGGG-SEEEEEESSBBS
T ss_pred             chhhccccCCCcCEEEEeeccc
Confidence            222223 346899999998875

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=95.19  E-value=0.014  Score=52.78  Aligned_cols=68  Identities=9%  Similarity=0.168  Sum_probs=49.1

Q ss_pred             ccCcCCCCccCCC--CHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcC
Q 027661          114 SLFYETPRFVTHI--DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPV  187 (220)
Q Consensus       114 ~~FY~~PRfVtHI--Dd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~r  187 (220)
                      ..+....++..|.  |+..++.+.+...  +    .+|..|||+|||++..   +.+.  ..+|+|+|+++++++. +.+
T Consensus         6 ~~~~~kk~~GQnFL~d~~i~~~Iv~~~~--~----~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~   77 (294)
T PTZ00338          6 SGMVFNKKFGQHILKNPLVLDKIVEKAA--I----KPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKR   77 (294)
T ss_pred             CCcCcCCCCCccccCCHHHHHHHHHhcC--C----CCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHH
Confidence            3455677788886  9999988877542  2    2488999999996655   4332  2589999999999984 554


Q ss_pred             cc
Q 027661          188 LT  189 (220)
Q Consensus       188 L~  189 (220)
                      +.
T Consensus        78 ~~   79 (294)
T PTZ00338         78 FQ   79 (294)
T ss_pred             HH
Confidence            43

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=95.17  E-value=0.011  Score=52.96  Aligned_cols=63  Identities=14%  Similarity=0.194  Sum_probs=36.2

Q ss_pred             eEeeeccchh---hccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCCCCCCCCCCCcceEEE
Q 027661          151 SILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       151 ~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~p~LPFeDnSFDaVtc  214 (220)
                      +|||||||.+   .-+.......+|+|.|+|++-|+ ++......-+.+   +..+.--+... .||.++|
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~-~fDlIVs  182 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRG-KFDLIVS  182 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCC-ceeEEEe
Confidence            7999999932   23444333369999999999998 333333322111   11111112222 7998887

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=94.95  E-value=0.024  Score=50.04  Aligned_cols=63  Identities=10%  Similarity=0.037  Sum_probs=38.4

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh--------hccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--------VQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--------VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||+|||++..   +.+.....+|+|+|+ +++++. ++++.+.-        ..|+-   +.++++  +|+|+++
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~---~~~~~~--~D~v~~~  222 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIY---KESYPE--ADAVLFC  222 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCcc---CCCCCC--CCEEEeE
Confidence            478999999996554   333333368999998 677763 44433321        12221   234543  6998876


Q ss_pred             e
Q 027661          216 C  216 (220)
Q Consensus       216 v  216 (220)
                      .
T Consensus       223 ~  223 (306)
T TIGR02716       223 R  223 (306)
T ss_pred             h
Confidence            5

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=94.92  E-value=0.037  Score=37.29  Aligned_cols=65  Identities=22%  Similarity=0.182  Sum_probs=38.3

Q ss_pred             eEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCc-C--cch-----hhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          151 SILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNP-V--LTE-----YVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       151 ~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~-r--L~~-----~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      +|||+|||.+..   +.+ ....+++|.|.|++.+.... .  ...     +...|...  ..+....+||.|+|....
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~i~~~~~~   76 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE--LPPEADESFDVIISDPPL   76 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhh--hccccCCceEEEEEccce
Confidence            489999995554   222 23479999999998877422 1  111     11112111  112356789999987643

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN03075 nicotianamine synthase; Provisional

Probab=94.84  E-value=0.041  Score=50.64  Aligned_cols=68  Identities=4%  Similarity=0.031  Sum_probs=39.5

Q ss_pred             CCeEeeeccchh----hccCCC-CCCCcEEEecCCHHHHh-hCcCc------chhhh-ccCCCCCCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWV----SHFPPG-YKQDRIVGMGMNEEELK-RNPVL------TEYVV-QDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWv----SHLP~~-v~~~~VVGLGmN~eELa-aN~rL------~~~~V-qDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ..+|||+|||-.    .-+... ...++++|+|.|++..+ ++..+      .+.+. ...|.. +++-....||+|+|.
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~-~~~~~l~~FDlVF~~  202 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM-DVTESLKEYDVVFLA  202 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh-hcccccCCcCEEEEe
Confidence            579999999933    212211 12259999999999987 34333      12111 112221 222235789999998


Q ss_pred             ee
Q 027661          216 CK  217 (220)
Q Consensus       216 vS  217 (220)
                      +-
T Consensus       203 AL  204 (296)
T PLN03075        203 AL  204 (296)
T ss_pred             cc
Confidence            53

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=94.84  E-value=0.016  Score=56.06  Aligned_cols=68  Identities=13%  Similarity=0.160  Sum_probs=47.3

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhhc---cCCCCC-CC-CCCCCCcceEEE
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLNP-KL-PFEDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~p-~L-PFeDnSFDaVtc  214 (220)
                      +||.+|||+||+   =..|+.+-+.. +.|+..|.++.-++. ..++..+-+.   -.|.++ .+ +.....||.|++
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence            479999999998   55676665543 799999999999885 6666665433   244443 22 133467999993

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=94.61  E-value=0.057  Score=46.54  Aligned_cols=34  Identities=12%  Similarity=0.264  Sum_probs=26.9

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR  184 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa  184 (220)
                      |.+|||++||.+.   +|.+  ..-+|+|+|+|+..++.
T Consensus        35 ~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~   71 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQ   71 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHH
Confidence            7799999999554   4655  23489999999998883

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=94.51  E-value=0.019  Score=49.67  Aligned_cols=62  Identities=19%  Similarity=0.184  Sum_probs=39.3

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh------CcCcch-hhhccCCCCCCCCCCCCCcceEEEee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR------NPVLTE-YVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa------N~rL~~-~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +.++|||+||.+++   |...  .-.|+++|.|+.-|+.      ...|+= ..+.|+|.-   .++ ..||+|++++
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~---~~~-~~yD~I~st~  102 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDF---DFP-EEYDFIVSTV  102 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCB---S-T-TTEEEEEEES
T ss_pred             CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhc---ccc-CCcCEEEEEE
Confidence            45999999998888   4441  2389999999988773      233331 234566653   343 6799998764

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=94.40  E-value=0.065  Score=47.95  Aligned_cols=57  Identities=23%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      +..|-|+|||...   -++..+   +|.-.|+-+    .|+..+.   -|+   .++|++|+|.|+|+||.|.
T Consensus        73 ~~viaD~GCGdA~la~~~~~~~---~V~SfDLva----~n~~Vta---cdi---a~vPL~~~svDv~VfcLSL  132 (219)
T PF05148_consen   73 SLVIADFGCGDAKLAKAVPNKH---KVHSFDLVA----PNPRVTA---CDI---ANVPLEDESVDVAVFCLSL  132 (219)
T ss_dssp             TS-EEEES-TT-HHHHH--S------EEEEESS-----SSTTEEE---S-T---TS-S--TT-EEEEEEES--
T ss_pred             CEEEEECCCchHHHHHhcccCc---eEEEeeccC----CCCCEEE---ecC---ccCcCCCCceeEEEEEhhh
Confidence            6789999999332   245443   678787765    3554433   222   5789999999999999874

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=94.31  E-value=0.036  Score=47.57  Aligned_cols=80  Identities=14%  Similarity=0.087  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh---ccCCCC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLN  199 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~  199 (220)
                      |..+++|-+.+....+     |.+||||+||.++-    +..  ...+|+|++.|++-++. +..+...-.   .-++.+
T Consensus        38 d~v~e~l~~~l~~~~~-----~~~vLDl~~GsG~l~l~~lsr--~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D  110 (199)
T PRK10909         38 DRVRETLFNWLAPVIV-----DARCLDCFAGSGALGLEALSR--YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTN  110 (199)
T ss_pred             HHHHHHHHHHHhhhcC-----CCEEEEcCCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEch
Confidence            4455556555554332     67999999994332    222  23699999999998772 333322111   111111


Q ss_pred             --CCCCCCCCCcceEEE
Q 027661          200 --PKLPFEDNSFDVITN  214 (220)
Q Consensus       200 --p~LPFeDnSFDaVtc  214 (220)
                        ..++..+.+||+|++
T Consensus       111 ~~~~l~~~~~~fDlV~~  127 (199)
T PRK10909        111 ALSFLAQPGTPHNVVFV  127 (199)
T ss_pred             HHHHHhhcCCCceEEEE
Confidence              112323567999986

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=93.98  E-value=0.054  Score=50.07  Aligned_cols=64  Identities=13%  Similarity=0.155  Sum_probs=41.2

Q ss_pred             CcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661          116 FYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       116 FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa  183 (220)
                      |.-.|.--.-..+...++|-+.-.+.+..  .++.+||||+||.+..   +..  ...+|+|+|+|++.++
T Consensus       203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~--~~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av~  269 (374)
T TIGR02085       203 LVIRPQSFFQTNPKVAAQLYATARQWVRE--IPVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAIA  269 (374)
T ss_pred             EEECCCccccCCHHHHHHHHHHHHHHHHh--cCCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHHH
Confidence            33334433455666677765544444421  1367999999996654   443  2368999999999998

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=93.68  E-value=0.035  Score=52.36  Aligned_cols=66  Identities=18%  Similarity=0.116  Sum_probs=38.9

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh---CcCcchhh---hccCCCCC-----CCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR---NPVLTEYV---VQDLNLNP-----KLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa---N~rL~~~~---VqDLN~~p-----~LPFeDnSFDaVtc  214 (220)
                      |.+|||||||.+.   +.... +..+|+++|+|+..++.   |-+++..-   +.-++.+.     ++.-++.+||.|+|
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            7799999999443   32211 23599999999999982   43333210   11111121     22224668999997


Q ss_pred             e
Q 027661          215 V  215 (220)
Q Consensus       215 s  215 (220)
                      -
T Consensus       300 D  300 (396)
T PRK15128        300 D  300 (396)
T ss_pred             C
Confidence            3

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=93.60  E-value=0.067  Score=49.52  Aligned_cols=66  Identities=21%  Similarity=0.281  Sum_probs=41.9

Q ss_pred             CCCeEeeeccchhhc--cCCCCCCCcEEEecCCHHHHhh---CcCcchhhhccCCCC---CCCCCCC-CCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKR---NPVLTEYVVQDLNLN---PKLPFED-NSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH--LP~~v~~~~VVGLGmN~eELaa---N~rL~~~~VqDLN~~---p~LPFeD-nSFDaVtcs  215 (220)
                      +|.+|||+|||.+.=  -...++-.+|+|.|+.+.-+.+   |-+++.  |..++..   -.+.... ..||+|+|-
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~--v~~~~~~~~~~~~~~~~~~~~DvIVAN  236 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG--VELLVQAKGFLLLEVPENGPFDVIVAN  236 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcC--CchhhhcccccchhhcccCcccEEEeh
Confidence            389999999994432  2223566799999999998883   555544  2221111   1222333 599999874

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=93.27  E-value=0.14  Score=44.28  Aligned_cols=33  Identities=12%  Similarity=0.234  Sum_probs=26.1

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa  183 (220)
                      |.+|||++||.+..   |.+  ..-+|+|+|+|+.-++
T Consensus        38 ~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~   73 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVE   73 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHH
Confidence            77999999995544   554  2348999999999887

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=93.14  E-value=0.066  Score=52.86  Aligned_cols=94  Identities=20%  Similarity=0.266  Sum_probs=53.0

Q ss_pred             cCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCC--CeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhhCcCcc-
Q 027661          117 YETPRFVTHIDDPAIAALTKYYSEVFPPSNTPG--VSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKRNPVLT-  189 (220)
Q Consensus       117 Y~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG--~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaaN~rL~-  189 (220)
                      ..-|-=.||.-.+|-+.+.+ ..+.+|.....|  -.+||++||.+|.    ++.+|   .++.+-+|.+-= .+-++. 
T Consensus        85 ~~FPgggt~F~~Ga~~Yid~-i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V---~t~s~a~~d~~~-~qvqfal  159 (506)
T PF03141_consen   85 FRFPGGGTMFPHGADHYIDQ-IAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV---TTMSFAPNDEHE-AQVQFAL  159 (506)
T ss_pred             EEeCCCCccccCCHHHHHHH-HHHHhhccccCCceEEEEeccceeehhHHHHhhCCc---eEEEcccccCCc-hhhhhhh
Confidence            34455667777777776653 566776521113  2689999995554    45555   444444441110 111111 


Q ss_pred             hh-hhccCCC--CCCCCCCCCCcceEEEe
Q 027661          190 EY-VVQDLNL--NPKLPFEDNSFDVITNV  215 (220)
Q Consensus       190 ~~-~VqDLN~--~p~LPFeDnSFDaVtcs  215 (220)
                      +. +..-+..  ..+|||+|++||.|=|+
T Consensus       160 eRGvpa~~~~~~s~rLPfp~~~fDmvHcs  188 (506)
T PF03141_consen  160 ERGVPAMIGVLGSQRLPFPSNAFDMVHCS  188 (506)
T ss_pred             hcCcchhhhhhccccccCCccchhhhhcc
Confidence            11 1122222  46999999999999886

; GO: 0008168 methyltransferase activity

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=93.05  E-value=0.041  Score=44.68  Aligned_cols=32  Identities=22%  Similarity=0.454  Sum_probs=25.2

Q ss_pred             CCeEeeeccc---hhhccCCCC-CCCcEEEecCCHH
Q 027661          149 GVSILDLCSS---WVSHFPPGY-KQDRIVGMGMNEE  180 (220)
Q Consensus       149 G~~VLDLccS---WvSHLP~~v-~~~~VVGLGmN~e  180 (220)
                      +..||||||+   |...+-+.. ..++|+|+|++..
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            5899999999   777766654 3489999999987

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK04148 hypothetical protein; Provisional

Probab=93.00  E-value=0.052  Score=44.88  Aligned_cols=62  Identities=15%  Similarity=0.254  Sum_probs=39.5

Q ss_pred             HHHHHHhhCCCCCCCCCeEeeeccchhhccCCCCC--CCcEEEecCCHHHHhh-CcCcchhhhccCC
Q 027661          134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYK--QDRIVGMGMNEEELKR-NPVLTEYVVQDLN  197 (220)
Q Consensus       134 LT~lY~~~lp~~~~pG~~VLDLccSWvSHLP~~v~--~~~VVGLGmN~eELaa-N~rL~~~~VqDLN  197 (220)
                      +.++-.+.++..  .|.+|||+|||-+.++...+.  .-+|+|+|.|++-.+. .+.-.+..+.|+-
T Consensus         4 i~~~l~~~~~~~--~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf   68 (134)
T PRK04148          4 IAEFIAENYEKG--KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLF   68 (134)
T ss_pred             HHHHHHHhcccc--cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCC
Confidence            445555555542  368999999996654333221  2599999999998773 4444455555554

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=92.94  E-value=0.1  Score=48.32  Aligned_cols=73  Identities=27%  Similarity=0.442  Sum_probs=50.8

Q ss_pred             hhCCCCCCCCCeEeeeccc---hhhccCCCCCC--CcEEEecCCHHHHhh-CcCcchhhhcc---CCCC----CCCCCCC
Q 027661          140 EVFPPSNTPGVSILDLCSS---WVSHFPPGYKQ--DRIVGMGMNEEELKR-NPVLTEYVVQD---LNLN----PKLPFED  206 (220)
Q Consensus       140 ~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~--~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~----p~LPFeD  206 (220)
                      ..+-+  +||.+|||+|++   =+.|+.+-...  ..|+.+|.++.=|+. +.+++..-+.+   .|.+    +......
T Consensus       150 ~~L~p--~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~  227 (355)
T COG0144         150 LVLDP--KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG  227 (355)
T ss_pred             HHcCC--CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc
Confidence            45554  589999999998   56777665543  457999999999995 77777765553   3322    2333444


Q ss_pred             CCcceEEE
Q 027661          207 NSFDVITN  214 (220)
Q Consensus       207 nSFDaVtc  214 (220)
                      ..||.|++
T Consensus       228 ~~fD~iLl  235 (355)
T COG0144         228 EKFDRILL  235 (355)
T ss_pred             CcCcEEEE
Confidence            47999986

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=92.93  E-value=0.17  Score=45.97  Aligned_cols=51  Identities=25%  Similarity=0.547  Sum_probs=35.3

Q ss_pred             HHHHHHhhCCCCCCCCCeEeeeccc-------hhhccCCCCCCCcEEEecCCHHHHhh-CcCcc
Q 027661          134 LTKYYSEVFPPSNTPGVSILDLCSS-------WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLT  189 (220)
Q Consensus       134 LT~lY~~~lp~~~~pG~~VLDLccS-------WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~  189 (220)
                      |.+.|.+.+..-+ +-.+||||+||       |. |.+++.   .++|.|+|..+++. |.-++
T Consensus        92 Ld~fY~~if~~~~-~p~sVlDigCGlNPlalp~~-~~~~~a---~Y~a~DID~~~ve~l~~~l~  150 (251)
T PF07091_consen   92 LDEFYDEIFGRIP-PPDSVLDIGCGLNPLALPWM-PEAPGA---TYIAYDIDSQLVEFLNAFLA  150 (251)
T ss_dssp             HHHHHHHHCCCS----SEEEEET-TTCHHHHHTT-TSSTT----EEEEEESBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-CCchhhhhhccCCceehhhc-ccCCCc---EEEEEeCCHHHHHHHHHHHH
Confidence            6788998876422 24699999999       44 555554   89999999999984 54443

>TIGR00755 ksgA dimethyladenosine transferase

Probab=92.64  E-value=0.14  Score=44.27  Aligned_cols=55  Identities=11%  Similarity=0.200  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCc
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVL  188 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL  188 (220)
                      +|...++++.+...  +    .++.+|||+|||++..   +.+..  .+|+|+|.|+++++. +.++
T Consensus        13 ~d~~i~~~i~~~~~--~----~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~   71 (253)
T TIGR00755        13 IDESVIQKIVEAAN--V----LEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLL   71 (253)
T ss_pred             CCHHHHHHHHHhcC--C----CCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHh
Confidence            67777777766442  1    2478999999996654   44432  469999999999984 4444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PLN02672 methionine S-methyltransferase

Probab=92.40  E-value=0.071  Score=56.66  Aligned_cols=35  Identities=11%  Similarity=0.261  Sum_probs=26.5

Q ss_pred             CCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHh
Q 027661          149 GVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       149 G~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELa  183 (220)
                      |.+|||||||.   ...+.......+|+|+|+|++.++
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~  156 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVK  156 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence            56999999992   233444444469999999999997

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=92.37  E-value=0.06  Score=49.86  Aligned_cols=64  Identities=23%  Similarity=0.313  Sum_probs=46.6

Q ss_pred             eEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhhCcCc------chhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          151 SILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       151 ~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaaN~rL------~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      .++||+||   ..+||-.+ +-++++-.|++..|++.-..-      ..++|.|   .-.|||.+||||.+|.+.|.
T Consensus        75 ~a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~D---EE~Ldf~ens~DLiisSlsl  147 (325)
T KOG2940|consen   75 TAFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGD---EEFLDFKENSVDLIISSLSL  147 (325)
T ss_pred             ceeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhccCCCceEEEEEecc---hhcccccccchhhhhhhhhh
Confidence            69999999   66786443 237999999999999952222      2233332   34789999999999988764

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=92.07  E-value=0.093  Score=52.59  Aligned_cols=63  Identities=22%  Similarity=0.198  Sum_probs=38.7

Q ss_pred             CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh---CcCcchh-------hhccCCCCCCCCCCCCCcceEEE
Q 027661          149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR---NPVLTEY-------VVQDLNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa---N~rL~~~-------~VqDLN~~p~LPFeDnSFDaVtc  214 (220)
                      |.+|||||||   ...++... +-.+|+++|+|++.++.   |-+++..       +..|...-  |.-..++||.|+|
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~--l~~~~~~fDlIil  614 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW--LKEAREQFDLIFI  614 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH--HHHcCCCcCEEEE
Confidence            7799999999   34444432 33579999999999982   4433321       11222111  1101568999998

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=92.01  E-value=0.086  Score=48.23  Aligned_cols=67  Identities=13%  Similarity=0.223  Sum_probs=38.8

Q ss_pred             CCCeEeeeccchhhc--cCCCCCCCcEEEecCCHHHHhh---CcCcchhhhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKR---NPVLTEYVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH--LP~~v~~~~VVGLGmN~eELaa---N~rL~~~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||.+.=  ....++-++|+|.|+++.-...   |-+++..-. ++.......+....||.|+.-
T Consensus       161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~~~~~~dlvvAN  232 (295)
T PF06325_consen  161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDLVEGKFDLVVAN  232 (295)
T ss_dssp             TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCTCCS-EEEEEEE
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecccccccCCEEEEC
Confidence            488999999994332  2222455799999999987762   655554211 111111122334899999863

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=92.00  E-value=0.18  Score=40.08  Aligned_cols=38  Identities=21%  Similarity=0.347  Sum_probs=26.7

Q ss_pred             CCCCeEeeeccc------hhhc-cCCCCCCCcEEEecCCHHHHhh
Q 027661          147 TPGVSILDLCSS------WVSH-FPPGYKQDRIVGMGMNEEELKR  184 (220)
Q Consensus       147 ~pG~~VLDLccS------WvSH-LP~~v~~~~VVGLGmN~eELaa  184 (220)
                      ++...|+|+|||      ..+| |+..-..-+|+|+|.|++.+..
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~   68 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES   68 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence            457899999999      2233 2222123599999999988774

>PRK00811 spermidine synthase; Provisional

Probab=91.81  E-value=0.23  Score=44.27  Aligned_cols=67  Identities=18%  Similarity=0.082  Sum_probs=40.1

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccC-----CCCC--CCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDL-----NLNP--KLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDL-----N~~p--~LPFeDnSFDaVtc  214 (220)
                      ..+|||||||.+.-   +-..-...+|++++++++.++. +..+.+.-   .+|-     +.+.  -++..+++||+|++
T Consensus        77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  156 (283)
T PRK00811         77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV  156 (283)
T ss_pred             CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence            56999999995433   2221123689999999999984 44443210   0111     1111  12335789999998


Q ss_pred             e
Q 027661          215 V  215 (220)
Q Consensus       215 s  215 (220)
                      -
T Consensus       157 D  157 (283)
T PRK00811        157 D  157 (283)
T ss_pred             C
Confidence            4

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=90.33  E-value=0.77  Score=40.96  Aligned_cols=65  Identities=22%  Similarity=0.310  Sum_probs=40.5

Q ss_pred             CCeEeeeccc-----hhhc--cCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCC-------CCCCCCCCCCcceEEE
Q 027661          149 GVSILDLCSS-----WVSH--FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNL-------NPKLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccS-----WvSH--LP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~-------~p~LPFeDnSFDaVtc  214 (220)
                      -.+|||+|||     |..+  ++ .+  .+++.+|-|+++++.-..|.+......+.       ...+++...  |.||+
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~-~~--~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--DLvi~  108 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWP-SL--KEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPD--DLVIA  108 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhc-Cc--eeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCC--cEEEE
Confidence            3589999999     6544  66 33  58999999999998533343322111111       112444333  99999


Q ss_pred             eeee
Q 027661          215 VCKT  218 (220)
Q Consensus       215 svSV  218 (220)
                      +++.
T Consensus       109 s~~L  112 (274)
T PF09243_consen  109 SYVL  112 (274)
T ss_pred             ehhh
Confidence            8764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=90.04  E-value=0.43  Score=41.47  Aligned_cols=79  Identities=10%  Similarity=0.088  Sum_probs=45.4

Q ss_pred             HHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHh-hCcCcchhhhcc----CCCC---
Q 027661          132 AALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELK-RNPVLTEYVVQD----LNLN---  199 (220)
Q Consensus       132 ~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELa-aN~rL~~~~VqD----LN~~---  199 (220)
                      .++-....+..+     +.+|||+|||-+.   .+...+. .++|+++|.|++.++ +++.+.+.-+.+    ++.+   
T Consensus        57 g~~L~~l~~~~~-----~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~  131 (234)
T PLN02781         57 GLFLSMLVKIMN-----AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS  131 (234)
T ss_pred             HHHHHHHHHHhC-----CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Confidence            334444445544     4699999988442   2222222 369999999999888 466665543321    1111   


Q ss_pred             --CCCC--CCCCCcceEEEe
Q 027661          200 --PKLP--FEDNSFDVITNV  215 (220)
Q Consensus       200 --p~LP--FeDnSFDaVtcs  215 (220)
                        ++|.  .++.+||.|.+-
T Consensus       132 ~L~~l~~~~~~~~fD~VfiD  151 (234)
T PLN02781        132 ALDQLLNNDPKPEFDFAFVD  151 (234)
T ss_pred             HHHHHHhCCCCCCCCEEEEC
Confidence              1121  225789999874

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=89.94  E-value=0.49  Score=44.43  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=37.9

Q ss_pred             CCeEeeeccchhhccCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       149 G~~VLDLccSWvSHLP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ...|-|+|||...---.  ....|.-+|+-    ++|++....-      .-++|++|.|.|+++||.|.
T Consensus       181 ~~vIaD~GCGEakiA~~--~~~kV~SfDL~----a~~~~V~~cD------m~~vPl~d~svDvaV~CLSL  238 (325)
T KOG3045|consen  181 NIVIADFGCGEAKIASS--ERHKVHSFDLV----AVNERVIACD------MRNVPLEDESVDVAVFCLSL  238 (325)
T ss_pred             ceEEEecccchhhhhhc--cccceeeeeee----cCCCceeecc------ccCCcCccCcccEEEeeHhh
Confidence            45899999995543211  12467776652    2465554321      12589999999999999874

>PRK04457 spermidine synthase; Provisional

Probab=89.83  E-value=0.19  Score=44.50  Aligned_cols=36  Identities=14%  Similarity=0.039  Sum_probs=25.2

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR  184 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa  184 (220)
                      +.+|||||||-++   .+.......+|+++|+|++.++.
T Consensus        67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~  105 (262)
T PRK04457         67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAV  105 (262)
T ss_pred             CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence            5689999999332   12121222589999999999983

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=89.76  E-value=0.15  Score=45.11  Aligned_cols=61  Identities=21%  Similarity=0.395  Sum_probs=39.4

Q ss_pred             CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh-CcCcchh-----hhccCCCCCCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-----VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-----~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      -.++||++||   -+.+|.+..  .+++++|+++.-|+. ..|+.+.     .+.++   |. ..++.+||.|+|+
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv---p~-~~P~~~FDLIV~S  113 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADV---PE-FWPEGRFDLIVLS  113 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T---TT----SS-EEEEEEE
T ss_pred             cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC---CC-CCCCCCeeEEEEe
Confidence            4689999999   556676643  699999999999994 7788764     12222   21 2578999999997

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=89.28  E-value=0.35  Score=42.28  Aligned_cols=70  Identities=23%  Similarity=0.248  Sum_probs=46.0

Q ss_pred             CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCC----C-CCCCCCCCcceEEEeee
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN----P-KLPFEDNSFDVITNVCK  217 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~----p-~LPFeDnSFDaVtcsvS  217 (220)
                      +||+.++|++||.+|=   +.---..++|+.++=|++.+.. ......+-++++-..    | .|+=.+ +||++.++=|
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIGGg  111 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIGGG  111 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEECCC
Confidence            4799999999994443   2111122799999999999984 555555555554433    2 344222 7999998754

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=89.26  E-value=0.098  Score=45.35  Aligned_cols=67  Identities=18%  Similarity=0.291  Sum_probs=36.1

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh---hCcCcchh--hhccCCCCC-CCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK---RNPVLTEY--VVQDLNLNP-KLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa---aN~rL~~~--~VqDLN~~p-~LPFeDnSFDaVtcs  215 (220)
                      +|..|||++||.+..   +..--+..+|++.|+|++-.+   .|-+++..  .+.-+|.+. +++- ++.||.|++.
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~  176 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMN  176 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE-
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEEC
Confidence            589999999996655   222113368999999976544   35555532  223344543 2222 8899999875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=89.11  E-value=0.4  Score=45.13  Aligned_cols=63  Identities=21%  Similarity=0.229  Sum_probs=37.3

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh---hCcCcch-----hhhccCCCCCCCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK---RNPVLTE-----YVVQDLNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa---aN~rL~~-----~~VqDLN~~p~LPFeDnSFDaVtc  214 (220)
                      +.+|||++||.+.-   +..+.+..+|++.|.|++-++   .|-+++.     ....|.|.-+.   ..+.||+|++
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~---~~~~fD~V~l  131 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLH---EERKFDVVDI  131 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHh---hcCCCCEEEE
Confidence            46899999994432   333333458999999988776   2433332     12233332211   1456999875

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=89.09  E-value=0.29  Score=43.18  Aligned_cols=38  Identities=16%  Similarity=0.183  Sum_probs=29.2

Q ss_pred             CCCeEeeeccchhhc---cCCCCCC-CcEEEecCCHHHHhhC
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEEELKRN  185 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN~eELaaN  185 (220)
                      +|+.|+||||.-+++   +.+.++. ++|+|+|+.+-++-.+
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~   86 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPG   86 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCC
Confidence            599999999985555   4444444 5799999999887766

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=88.84  E-value=0.46  Score=45.59  Aligned_cols=71  Identities=15%  Similarity=0.211  Sum_probs=44.1

Q ss_pred             CCCeEeeeccchhhccCC--CCCCCcEEEecCCHHHHhh-CcCcchhhh---------ccCCCC-------CCCCCCCCC
Q 027661          148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKR-NPVLTEYVV---------QDLNLN-------PKLPFEDNS  208 (220)
Q Consensus       148 pG~~VLDLccSWvSHLP~--~v~~~~VVGLGmN~eELaa-N~rL~~~~V---------qDLN~~-------p~LPFeDnS  208 (220)
                      +|..+|||+||=+--|-+  .-+-++.||.|+.+--+.+ ..|-.++.-         .-+-.+       -.+|+.|.+
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~  196 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR  196 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence            478999999993322211  1122789999998766552 444433211         111111       267899999


Q ss_pred             cceEEEeeee
Q 027661          209 FDVITNVCKT  218 (220)
Q Consensus       209 FDaVtcsvSV  218 (220)
                      ||+|-|-|+.
T Consensus       197 fDivScQF~~  206 (389)
T KOG1975|consen  197 FDIVSCQFAF  206 (389)
T ss_pred             cceeeeeeeE
Confidence            9999998874

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=87.85  E-value=0.71  Score=40.87  Aligned_cols=50  Identities=14%  Similarity=0.155  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHhhCCCCCCCCCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHhh
Q 027661          130 AIAALTKYYSEVFPPSNTPGVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELKR  184 (220)
Q Consensus       130 ai~~LT~lY~~~lp~~~~pG~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELaa  184 (220)
                      .-..|.+++.+..++   +|.+||+.+||-   ..+|.+. ++ +|+|+|+++.-++.
T Consensus        28 pnp~L~~~~~~l~~~---~~~rvLvPgCGkg~D~~~LA~~-G~-~V~GvDlS~~Ai~~   80 (226)
T PRK13256         28 PNEFLVKHFSKLNIN---DSSVCLIPMCGCSIDMLFFLSK-GV-KVIGIELSEKAVLS   80 (226)
T ss_pred             CCHHHHHHHHhcCCC---CCCeEEEeCCCChHHHHHHHhC-CC-cEEEEecCHHHHHH
Confidence            345677777776543   478999999993   4456552 33 79999999999885

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=87.84  E-value=0.93  Score=41.87  Aligned_cols=63  Identities=10%  Similarity=0.167  Sum_probs=41.8

Q ss_pred             CcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh
Q 027661          116 FYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       116 FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa  183 (220)
                      |+-.|.--..+....-+.|.+...+.+..   .+.+||||+||.+   ..|.+..  .+|+|+|.|+++++
T Consensus       168 ~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~---~~~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~  233 (353)
T TIGR02143       168 YRQVENSFTQPNAAVNIKMLEWACEVTQG---SKGDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVN  233 (353)
T ss_pred             EEECCCCcccCCHHHHHHHHHHHHHHhhc---CCCcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHH
Confidence            33333333344555566676666666642   1347999999954   3466544  58999999999998

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=87.71  E-value=0.17  Score=46.65  Aligned_cols=61  Identities=23%  Similarity=0.319  Sum_probs=37.4

Q ss_pred             CeEeeeccchhhccCCCCCC--CcEEEecCCHHHHhh--CcCcchhhh-ccCCCCCCCC-CCCCCcceEE
Q 027661          150 VSILDLCSSWVSHFPPGYKQ--DRIVGMGMNEEELKR--NPVLTEYVV-QDLNLNPKLP-FEDNSFDVIT  213 (220)
Q Consensus       150 ~~VLDLccSWvSHLP~~v~~--~~VVGLGmN~eELaa--N~rL~~~~V-qDLN~~p~LP-FeDnSFDaVt  213 (220)
                      .++|||+||.+.-=+. +..  .+.+|+|+|++||++  .+.+-+.++ -++-.  -|+ ..++.||.|+
T Consensus       127 ~~~lDLGCGTGL~G~~-lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~--Fl~~~~~er~DLi~  193 (287)
T COG4976         127 RRMLDLGCGTGLTGEA-LRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVL--FLEDLTQERFDLIV  193 (287)
T ss_pred             ceeeecccCcCcccHh-HHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHH--HhhhccCCcccchh
Confidence            5899999996654211 111  588999999999994  444544322 22211  233 4556677665

>PRK03612 spermidine synthase; Provisional

Probab=87.03  E-value=0.85  Score=44.29  Aligned_cols=67  Identities=18%  Similarity=0.162  Sum_probs=39.8

Q ss_pred             CCeEeeeccchh---hccCCCCCC-CcEEEecCCHHHHhh-C--cCcchhh---hcc-----CCCCC--CCCCCCCCcce
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQ-DRIVGMGMNEEELKR-N--PVLTEYV---VQD-----LNLNP--KLPFEDNSFDV  211 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~-~~VVGLGmN~eELaa-N--~rL~~~~---VqD-----LN~~p--~LPFeDnSFDa  211 (220)
                      ..+|||||||-+   .++-+ .+. .+|+++|+|+++++. +  +.+.+.-   .+|     .+.+.  -+.-.+++||+
T Consensus       298 ~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        298 PRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            569999999932   22222 122 599999999999994 3  3443321   111     11121  12234579999


Q ss_pred             EEEee
Q 027661          212 ITNVC  216 (220)
Q Consensus       212 Vtcsv  216 (220)
                      |++..
T Consensus       377 Ii~D~  381 (521)
T PRK03612        377 IIVDL  381 (521)
T ss_pred             EEEeC
Confidence            99864

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=86.73  E-value=0.65  Score=43.03  Aligned_cols=71  Identities=15%  Similarity=0.182  Sum_probs=48.3

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCC-----CCCC-CCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLN-----PKLP-FEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~-----p~LP-FeDnSFDaVtcs  215 (220)
                      ||..++|.=+|.+.|   +-+.++.++|+|+|.+++.++. ..+|.+|.  +.-++.+     ..|. ...++||.|+.-
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~D   99 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGILVD   99 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEEEe
Confidence            588999999999888   3333434899999999999994 66776641  1111111     1121 245789999987


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      .||
T Consensus       100 LGv  102 (305)
T TIGR00006       100 LGV  102 (305)
T ss_pred             ccC
Confidence            776

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=86.69  E-value=1.2  Score=37.65  Aligned_cols=51  Identities=6%  Similarity=-0.090  Sum_probs=35.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661          127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       127 Dd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa  183 (220)
                      |+..++++-+.-...+.     |.+||||+||.++-   +... +..+|+++|.|++-++
T Consensus        33 ~~~vrea~f~~l~~~~~-----g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~   86 (189)
T TIGR00095        33 TRVVRELFFNILRPEIQ-----GAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQ   86 (189)
T ss_pred             hHHHHHHHHHHHHHhcC-----CCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHH
Confidence            66677777665555554     78999999995543   2221 2358999999998776

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=86.26  E-value=1.2  Score=39.63  Aligned_cols=53  Identities=19%  Similarity=0.114  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc-c-CCCCCCCcEEEecCCHHHHhh
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-F-PPGYKQDRIVGMGMNEEELKR  184 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH-L-P~~v~~~~VVGLGmN~eELaa  184 (220)
                      +-|..-|...|.+-.-    .|..|||||||.++- + ..-++..+|+|+|...+.++.
T Consensus        29 ~~Aa~il~~a~~~g~l----~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei   83 (198)
T COG2263          29 PLAAYILWVAYLRGDL----EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEI   83 (198)
T ss_pred             HHHHHHHHHHHHcCCc----CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHH
Confidence            3455556666633332    388899999996554 1 111455799999999999983

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=86.24  E-value=0.49  Score=43.27  Aligned_cols=87  Identities=14%  Similarity=0.151  Sum_probs=58.8

Q ss_pred             CCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCC-CcEEEecCCHHHHh-hCcCcchhhh
Q 027661          119 TPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQ-DRIVGMGMNEEELK-RNPVLTEYVV  193 (220)
Q Consensus       119 ~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~-~~VVGLGmN~eELa-aN~rL~~~~V  193 (220)
                      .+..+.=-|.+.|..-+    ...     ||++|||-+.|.+   ..|...+++ |+|+..+.-++-++ +...|.++..
T Consensus        74 ~tQiIyPKD~~~I~~~~----gi~-----pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l  144 (256)
T COG2519          74 RTQIIYPKDAGYIVARL----GIS-----PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL  144 (256)
T ss_pred             CCceecCCCHHHHHHHc----CCC-----CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc
Confidence            44455556877776532    223     5999999888733   336655666 99999999999999 5888887744


Q ss_pred             cc----CCCCCCCCCCCCCcceEEE
Q 027661          194 QD----LNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       194 qD----LN~~p~LPFeDnSFDaVtc  214 (220)
                      .|    .+.+..=....+.||+|+.
T Consensus       145 ~d~v~~~~~Dv~~~~~~~~vDav~L  169 (256)
T COG2519         145 GDRVTLKLGDVREGIDEEDVDAVFL  169 (256)
T ss_pred             ccceEEEeccccccccccccCEEEE
Confidence            44    3344433444449999874

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=85.84  E-value=1.1  Score=45.02  Aligned_cols=103  Identities=17%  Similarity=0.240  Sum_probs=59.8

Q ss_pred             CCCCCcccCcCCCCccCC---CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh----------hccCCCCC------
Q 027661          108 FDESPDSLFYETPRFVTH---IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV----------SHFPPGYK------  168 (220)
Q Consensus       108 ~DesdD~~FY~~PRfVtH---IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv----------SHLP~~v~------  168 (220)
                      +|-+.+.++-.--|...|   |-+...+++-.+  .-.+   ++|..++|-|||.+          .+.|+.+.      
T Consensus       152 ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~--a~w~---~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f  226 (702)
T PRK11783        152 LDLSGESLHQRGYRQATGEAPLKENLAAAILLR--SGWP---QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGF  226 (702)
T ss_pred             EECCCCchhhccCccCCCCCCCcHHHHHHHHHH--cCCC---CCCCeEEccCCCccHHHHHHHHHHhcCCCCcccccccc
Confidence            556777777666666555   555555555432  1111   24789999999932          22343221      


Q ss_pred             -----------------------------CCcEEEecCCHHHHh-hCcCcchhhhcc----CCCC-CCC--CCCCCCcce
Q 027661          169 -----------------------------QDRIVGMGMNEEELK-RNPVLTEYVVQD----LNLN-PKL--PFEDNSFDV  211 (220)
Q Consensus       169 -----------------------------~~~VVGLGmN~eELa-aN~rL~~~~VqD----LN~~-p~L--PFeDnSFDa  211 (220)
                                                   ..+++|.|+|++.+. ++..+...-+.+    .+.+ .++  |+++++||+
T Consensus       227 ~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~  306 (702)
T PRK11783        227 SGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGL  306 (702)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCE
Confidence                                         136999999999999 344444332211    1222 133  445578999


Q ss_pred             EEEe
Q 027661          212 ITNV  215 (220)
Q Consensus       212 Vtcs  215 (220)
                      |+|-
T Consensus       307 IvtN  310 (702)
T PRK11783        307 VISN  310 (702)
T ss_pred             EEEC
Confidence            8873

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=85.66  E-value=0.49  Score=41.94  Aligned_cols=71  Identities=15%  Similarity=0.188  Sum_probs=45.8

Q ss_pred             CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccC---CCCCCCCC-CCCCcceEEEeeee
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDL---NLNPKLPF-EDNSFDVITNVCKT  218 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDL---N~~p~LPF-eDnSFDaVtcsvSV  218 (220)
                      +||++||+++||.+=+   |.+-+  ++|+.++..++=.+ +..+|...-..|+   ..+-..=+ +...||+|+++.++
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa  148 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAA  148 (209)
T ss_pred             CCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeecc
Confidence            4699999999994433   33323  39999999987666 4666766433332   12222223 33779999999886


Q ss_pred             c
Q 027661          219 H  219 (220)
Q Consensus       219 d  219 (220)
                      +
T Consensus       149 ~  149 (209)
T COG2518         149 P  149 (209)
T ss_pred             C
Confidence            4

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=85.39  E-value=1.5  Score=40.53  Aligned_cols=56  Identities=7%  Similarity=0.135  Sum_probs=40.9

Q ss_pred             cCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh
Q 027661          123 VTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       123 VtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa  183 (220)
                      -..+.....+.|-+...+.+..   .+.+||||+||.+   ..+....  .+|+|+|.|+++++
T Consensus       184 F~Q~N~~~~e~l~~~v~~~~~~---~~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~  242 (362)
T PRK05031        184 FTQPNAAVNEKMLEWALDATKG---SKGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVA  242 (362)
T ss_pred             eeccCHHHHHHHHHHHHHHhhc---CCCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHH
Confidence            3455667777887777777743   1357999999955   3455543  58999999999997

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=85.30  E-value=2.6  Score=38.93  Aligned_cols=87  Identities=20%  Similarity=0.245  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhhCCCCCCCCCeEeeeccchhhcc-C--CCCCC--CcEEEecCCHHHHhh---CcCcch----hhhccCCC
Q 027661          131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-P--PGYKQ--DRIVGMGMNEEELKR---NPVLTE----YVVQDLNL  198 (220)
Q Consensus       131 i~~LT~lY~~~lp~~~~pG~~VLDLccSWvSHL-P--~~v~~--~~VVGLGmN~eELaa---N~rL~~----~~VqDLN~  198 (220)
                      +.-|.+-+-++++-..++-.+||.+|||-+.-. |  +..+.  -.|.+-|+++..+..   |..-++    .+|.||..
T Consensus        54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~  133 (264)
T KOG2361|consen   54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTS  133 (264)
T ss_pred             hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccc
Confidence            567788888888875433238999999965541 1  11111  689999999998882   555554    36677776


Q ss_pred             CC-CCCCCCCCcceEEEeee
Q 027661          199 NP-KLPFEDNSFDVITNVCK  217 (220)
Q Consensus       199 ~p-~LPFeDnSFDaVtcsvS  217 (220)
                      +- .-|.+-+|+|.+|+-|-
T Consensus       134 ~~~~~~~~~~svD~it~IFv  153 (264)
T KOG2361|consen  134 PSLKEPPEEGSVDIITLIFV  153 (264)
T ss_pred             hhccCCCCcCccceEEEEEE
Confidence            64 66899999999999874

>TIGR00417 speE spermidine synthase

Probab=84.68  E-value=0.96  Score=39.81  Aligned_cols=36  Identities=6%  Similarity=-0.014  Sum_probs=25.1

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR  184 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa  184 (220)
                      ..+||+|+||.+.   ++-......+|+++|.+++.++.
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~  111 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIEL  111 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHH
Confidence            3499999999442   22221123689999999998884

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=84.68  E-value=0.34  Score=41.20  Aligned_cols=67  Identities=12%  Similarity=0.091  Sum_probs=40.8

Q ss_pred             CeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc-----CCCCCCC--CCCCCCcceEEEee
Q 027661          150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD-----LNLNPKL--PFEDNSFDVITNVC  216 (220)
Q Consensus       150 ~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD-----LN~~p~L--PFeDnSFDaVtcsv  216 (220)
                      ..+||||||.+.|   ++.......++|+++...-+.. ..+....-..+     .|...-|  =++++|+|.|.+-|
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F   96 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF   96 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence            3899999996666   3333333589999999998883 55554432222     1222212  25789999998765

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=84.65  E-value=2.8  Score=40.40  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=61.8

Q ss_pred             cccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh---Cc
Q 027661          113 DSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR---NP  186 (220)
Q Consensus       113 D~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa---N~  186 (220)
                      |..|-=.||--+-.-....+.|.+.=.+.+..  .++.+||||-||   -..+|.+.+  .+|+|++++++..++   |-
T Consensus       260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~--~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA  335 (432)
T COG2265         260 GVSFQISPRSFFQVNPAVAEKLYETALEWLEL--AGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENA  335 (432)
T ss_pred             ceEEEeCCCCceecCHHHHHHHHHHHHHHHhh--cCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHH
Confidence            33333455555556777888887777777765  357899999999   455677544  699999999998872   33


Q ss_pred             Ccc----hhhh-ccCCCCCCCCCCCCCcceEEE
Q 027661          187 VLT----EYVV-QDLNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       187 rL~----~~~V-qDLN~~p~LPFeDnSFDaVtc  214 (220)
                      +.+    .+++ .+...-..-..+...||+|+.
T Consensus       336 ~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv  368 (432)
T COG2265         336 AANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV  368 (432)
T ss_pred             HHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence            332    2222 222211111226678888874

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=84.43  E-value=0.52  Score=41.48  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=24.6

Q ss_pred             CCCCeEeeeccchhhccCCC----------CCCCcEEEecCCHHHHh
Q 027661          147 TPGVSILDLCSSWVSHFPPG----------YKQDRIVGMGMNEEELK  183 (220)
Q Consensus       147 ~pG~~VLDLccSWvSHLP~~----------v~~~~VVGLGmN~eELa  183 (220)
                      +++.+|||-|||.+.-|-.-          ....+++|.|+++....
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~   91 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVA   91 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHH
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHH
Confidence            35789999999966653221          13358999999999876

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=82.87  E-value=0.65  Score=42.54  Aligned_cols=42  Identities=14%  Similarity=0.145  Sum_probs=31.4

Q ss_pred             CCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcc
Q 027661          148 PGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLT  189 (220)
Q Consensus       148 pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~  189 (220)
                      +-.+|.|||||-+   --|........|+|+|=+.+||++ ..+|-
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp   75 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP   75 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC
Confidence            3468999999943   335555555789999999999994 55554

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=82.20  E-value=0.7  Score=45.39  Aligned_cols=66  Identities=32%  Similarity=0.508  Sum_probs=45.3

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhhcc---CCCC-CCCC---CCCCCcceEE
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVVQD---LNLN-PKLP---FEDNSFDVIT  213 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~-p~LP---FeDnSFDaVt  213 (220)
                      +||-+|||||+-   -++|++.-++. |.|+..|.|++-++. ...+...-+.+   .|.+ .++|   |.. +||-|+
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVL  317 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVL  317 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceee
Confidence            689999999996   77887766554 999999999999884 43343332211   1222 1333   666 999987

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=81.95  E-value=0.67  Score=41.62  Aligned_cols=68  Identities=25%  Similarity=0.429  Sum_probs=45.5

Q ss_pred             CCCCeEeeeccc---hhhccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhc---cCCCCCCC--C-CCCCCcceEEE
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLNPKL--P-FEDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~p~L--P-FeDnSFDaVtc  214 (220)
                      .||..|||+|++   =..|+.+-+. .++|+..|.+.+-+.. .+++...-+.   -++.+...  | .....||.|++
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence            479999999999   3457777665 5899999999999985 6666554322   22222211  1 22336999986

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=81.89  E-value=0.78  Score=37.25  Aligned_cols=18  Identities=39%  Similarity=0.628  Sum_probs=16.0

Q ss_pred             CCCCCCCCcceEEEeeee
Q 027661          201 KLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       201 ~LPFeDnSFDaVtcsvSV  218 (220)
                      +|||++++||+|+|.+++
T Consensus        37 ~lp~~~~~fD~v~~~~~l   54 (160)
T PLN02232         37 DLPFDDCEFDAVTMGYGL   54 (160)
T ss_pred             hCCCCCCCeeEEEecchh
Confidence            589999999999998865

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=81.71  E-value=3.1  Score=38.43  Aligned_cols=63  Identities=19%  Similarity=0.269  Sum_probs=42.4

Q ss_pred             CcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661          116 FYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       116 FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa  183 (220)
                      |--.|.--..+-....+.|.+.-.+.++..  ++ +||||.||.+..   |.+.+  .+|+|++.+++.++
T Consensus       167 ~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~--~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~  232 (352)
T PF05958_consen  167 FRISPGSFFQVNPEQNEKLYEQALEWLDLS--KG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVE  232 (352)
T ss_dssp             EEEETTS---SBHHHHHHHHHHHHHHCTT---TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHH
T ss_pred             EEECCCcCccCcHHHHHHHHHHHHHHhhcC--CC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHH
Confidence            333455555667777778877777888763  34 899999997655   65544  69999999999987

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=80.87  E-value=0.75  Score=38.94  Aligned_cols=81  Identities=22%  Similarity=0.272  Sum_probs=46.9

Q ss_pred             CHHHHHHHHHHHHhh-CCCCCCCCCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc----C
Q 027661          127 DDPAIAALTKYYSEV-FPPSNTPGVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD----L  196 (220)
Q Consensus       127 Dd~ai~~LT~lY~~~-lp~~~~pG~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD----L  196 (220)
                      -+..+++|=+.-... ++     |.++|||+||.++-    |-..  -.+|+-++.|.+-++. +..+...-..+    +
T Consensus        25 ~drvrealFniL~~~~~~-----g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~   97 (183)
T PF03602_consen   25 TDRVREALFNILQPRNLE-----GARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVI   97 (183)
T ss_dssp             SHHHHHHHHHHHHCH-HT-----T-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEE
T ss_pred             cHHHHHHHHHHhcccccC-----CCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeee
Confidence            356777777777766 64     89999999996654    4332  3699999999887773 44444332221    2


Q ss_pred             CCC-----CCCCCCCCCcceEEE
Q 027661          197 NLN-----PKLPFEDNSFDVITN  214 (220)
Q Consensus       197 N~~-----p~LPFeDnSFDaVtc  214 (220)
                      +.+     .++.-.+..||.|.+
T Consensus        98 ~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   98 KGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             ESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             ccCHHHHHHhhcccCCCceEEEE
Confidence            222     122235677887764

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK01581 speE spermidine synthase; Validated

Probab=80.23  E-value=1.6  Score=41.82  Aligned_cols=68  Identities=13%  Similarity=-0.004  Sum_probs=39.7

Q ss_pred             CCeEeeeccchhhccCCCC---CCCcEEEecCCHHHHhh-C--cCcchhhh---ccCC-----CC--CCCCCCCCCcceE
Q 027661          149 GVSILDLCSSWVSHFPPGY---KQDRIVGMGMNEEELKR-N--PVLTEYVV---QDLN-----LN--PKLPFEDNSFDVI  212 (220)
Q Consensus       149 G~~VLDLccSWvSHLP~~v---~~~~VVGLGmN~eELaa-N--~rL~~~~V---qDLN-----~~--p~LPFeDnSFDaV  212 (220)
                      ..+||+||||-+..+.+-+   .-.+|+.+|+++++++. +  +.|.++-.   .|-+     .+  --|+-.++.||+|
T Consensus       151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI  230 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI  230 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence            3599999999554322111   12699999999999883 3  34432110   1111     11  0133456789999


Q ss_pred             EEee
Q 027661          213 TNVC  216 (220)
Q Consensus       213 tcsv  216 (220)
                      ++-+
T Consensus       231 IvDl  234 (374)
T PRK01581        231 IIDF  234 (374)
T ss_pred             EEcC
Confidence            9864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.65
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.64
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.62
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.6
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.59
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.59
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.53
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.51
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.51
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.49
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.48
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.46
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.46
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.45
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.45
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.45
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.45
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.44
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.44
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.44
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.43
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.42
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.42
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.4
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.39
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.38
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.38
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.38
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.36
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.36
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.35
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.34
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.34
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.32
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.31
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.29
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.28
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.28
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.27
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.27
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.26
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.26
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.25
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.24
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.24
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.23
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.23
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.21
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.2
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.2
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.19
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.18
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.18
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.17
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.17
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.16
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.15
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.15
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.14
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.13
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.13
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.13
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.13
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.13
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.12
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.12
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.11
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.11
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.1
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.09
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.09
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.08
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.07
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.06
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.04
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.04
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.03
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.03
3ocj_A	305	Putative exported protein; structural genomics, PS	98.03
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.02
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.02
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.0
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.0
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.99
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.99
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.98
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	97.97
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.97
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.97
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.97
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	97.96
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.95
3lcc_A	235	Putative methyl chloride transferase; halide methy	97.94
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.94
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.93
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.93
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	97.93
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.92
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.92
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.91
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	97.91
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.9
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.9
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.9
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.89
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.88
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.88
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.87
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.87
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.85
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.84
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	97.83
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.82
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.82
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.82
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.81
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.81
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	97.81
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.8
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.8
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.8
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.78
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.78
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.78
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.76
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.76
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.76
2h00_A	254	Methyltransferase 10 domain containing protein; st	97.74
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.73
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	97.73
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.73
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.72
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	97.72
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.72
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.72
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.72
2esr_A	177	Methyltransferase; structural genomics, hypothetic	97.68
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.65
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.65
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	97.64
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.62
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.62
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	97.61
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	97.61
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.6
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	97.59
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.58
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.58
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.58
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.56
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.55
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.55
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	97.54
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.53
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.51
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.51
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.5
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.49
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.49
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.48
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.45
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.44
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.43
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.42
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.41
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.41
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.38
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.38
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.37
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.37
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.37
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.36
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.35
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.34
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.33
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.32
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.31
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.3
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.26
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.24
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.24
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.24
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.22
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	97.14
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.14
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	97.11
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.08
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.07
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	97.04
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	97.03
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.98
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	96.98
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.97
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	96.92
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	96.89
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	96.87
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.87
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.86
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	96.86
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	96.85
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.82
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	96.81
2qm3_A	373	Predicted methyltransferase; putative methyltransf	96.81
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	96.81
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	96.8
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.8
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	96.75
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	96.75
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	96.72
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.68
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	96.67
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	96.66
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	96.64
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	96.63
3ll7_A	410	Putative methyltransferase; methytransferase, stru	96.59
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	96.58
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	96.57
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.57
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	96.51
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	96.49
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	96.49
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	96.44
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.43
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.41
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.41
2o07_A	304	Spermidine synthase; structural genomics, structur	96.41
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	96.41
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	96.39
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.38
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.36
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.34
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	96.34
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.32
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	96.3
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	96.29
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	96.28
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	96.27
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.23
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	96.21
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	96.2
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.2
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.19
3k6r_A	278	Putative transferase PH0793; structural genomics,	96.11
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.09
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	96.05
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.04
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.01
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	95.92
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	95.92
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	95.87
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	95.85
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	95.82
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	95.82
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	95.76
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	95.75
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	95.73
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	95.63
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	95.63
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	95.58
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	95.5
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.15
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	95.12
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	94.85
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	94.72
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	94.53
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	94.5
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	94.25
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	93.96
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.15
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	92.75
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	92.14
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	91.78
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	91.76
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	91.5
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	91.28
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	91.12
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	91.09
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	90.74
3khk_A	544	Type I restriction-modification system methylation	88.88
3lkd_A	542	Type I restriction-modification system methyltrans	88.12
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	87.84
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	87.39
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	86.48
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	85.2
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	83.83
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	80.8

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.65  E-value=5.4e-08  Score=83.00  Aligned_cols=71  Identities=17%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             HhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCcCcc--hhhhccCCCCCCCCCCCCCcceEE
Q 027661          139 SEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVLT--EYVVQDLNLNPKLPFEDNSFDVIT  213 (220)
Q Consensus       139 ~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~rL~--~~~VqDLN~~p~LPFeDnSFDaVt  213 (220)
                      .+..+.    +.+|||||||.+..   |.+.  ..+|+|+|+|++||+.-.+..  ++.+.+.   .++||+|++||+|+
T Consensus        34 ~~~~~~----~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~---e~~~~~~~sfD~v~  104 (257)
T 4hg2_A           34 GEVAPA----RGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALRHPRVTYAVAPA---EDTGLPPASVDVAI  104 (257)
T ss_dssp             HHHSSC----SSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCCCTTEEEEECCT---TCCCCCSSCEEEEE
T ss_pred             HHhcCC----CCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhhcCCceeehhhh---hhhcccCCcccEEE
Confidence            344554    67999999995543   5543  369999999999998522211  1222222   36899999999999


Q ss_pred             Eeeee
Q 027661          214 NVCKT  218 (220)
Q Consensus       214 csvSV  218 (220)
                      |+.++
T Consensus       105 ~~~~~  109 (257)
T 4hg2_A          105 AAQAM  109 (257)
T ss_dssp             ECSCC
T ss_pred             Eeeeh
Confidence            98664

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.64  E-value=2.5e-08  Score=78.78  Aligned_cols=64  Identities=16%  Similarity=0.161  Sum_probs=44.2

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcch---hhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTE---YVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~---~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      +.+|||+|||.+.   ++.+..  .+|+|+|+|+++++. +.++..   +...|+..   + +++++||+|+|...+
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~---~-~~~~~fD~v~~~~~l  113 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFED---A-QLPRRYDNIVLTHVL  113 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGG---C-CCSSCEEEEEEESCG
T ss_pred             CCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHH---c-CcCCcccEEEEhhHH
Confidence            6799999999544   465532  489999999999983 444432   22233322   2 578999999998654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.62  E-value=1.8e-08  Score=83.95  Aligned_cols=68  Identities=10%  Similarity=0.067  Sum_probs=44.2

Q ss_pred             cCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhccCC--CCCCCcEEEecCCHHHHh
Q 027661          115 LFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       115 ~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSHLP~--~v~~~~VVGLGmN~eELa  183 (220)
                      .||..+|=.. -.+++++.+.+..++.+.....+|.+|||||||.+.|..-  .-+..+|+|+|+++++|+
T Consensus        23 ~~y~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~   92 (263)
T 2a14_A           23 TYYSFDGSPS-PEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNRE   92 (263)
T ss_dssp             HHCCCCCSCC-HHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHH
T ss_pred             HhcCCCcccc-hhhHHHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHH
Confidence            4665554221 1234677777667766632224689999999998766322  222358999999999999

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.60  E-value=9e-08  Score=79.01  Aligned_cols=66  Identities=12%  Similarity=0.101  Sum_probs=48.0

Q ss_pred             CCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh-CcCcc-hhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLT-EYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~-~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||   |..++.+  ...+|+|+|+|+++++. +.+.+ ++.+.|.   .++||++++||+|+|...+
T Consensus        34 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l  104 (261)
T 3ege_A           34 KGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYA---ENLALPDKSVDGVISILAI  104 (261)
T ss_dssp             TTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCT---TSCCSCTTCBSEEEEESCG
T ss_pred             CCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECch---hhCCCCCCCEeEEEEcchH
Confidence            48899999999   4445544  34699999999999994 33332 2233444   3578999999999998754

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.59  E-value=2.2e-08  Score=86.94  Aligned_cols=71  Identities=10%  Similarity=0.104  Sum_probs=48.3

Q ss_pred             CCCeEeeeccchhhccCC--CCCCCcEEEecCCHHHHh-hCcCcch-------------hhhccCCCCC---CC--CCCC
Q 027661          148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELK-RNPVLTE-------------YVVQDLNLNP---KL--PFED  206 (220)
Q Consensus       148 pG~~VLDLccSWvSHLP~--~v~~~~VVGLGmN~eELa-aN~rL~~-------------~~VqDLN~~p---~L--PFeD  206 (220)
                      +|.+|||||||.+.++..  .-+..+|+|+|+++++|+ ++.+..+             |.+.++..+.   .|  ++++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            488999999997765321  112368999999999999 3444332             2234443332   22  5788


Q ss_pred             CCcceEEEeeee
Q 027661          207 NSFDVITNVCKT  218 (220)
Q Consensus       207 nSFDaVtcsvSV  218 (220)
                      ++||+|+|.+++
T Consensus       128 ~~FD~V~~~~~l  139 (302)
T 2vdw_A          128 GKFNIIDWQFAI  139 (302)
T ss_dssp             SCEEEEEEESCG
T ss_pred             CCeeEEEECchH
Confidence            999999998765

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.59  E-value=4.6e-08  Score=81.66  Aligned_cols=36  Identities=14%  Similarity=0.068  Sum_probs=27.7

Q ss_pred             CCCeEeeeccchhhcc--CCCCCCCcEEEecCCHHHHh
Q 027661          148 PGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       148 pG~~VLDLccSWvSHL--P~~v~~~~VVGLGmN~eELa  183 (220)
                      +|.+|||||||.+.+.  .......+|+|+|+++++++
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~  108 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQ  108 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHH
Confidence            4789999999987742  11112469999999999998

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.53  E-value=3.4e-08  Score=80.64  Aligned_cols=66  Identities=24%  Similarity=0.442  Sum_probs=47.3

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcch-------hhhccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTE-------YVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~-------~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      ++.+|||||||.+.   .+.+..  .+|+|+|+|+++++. +.++.+       +.+.|+   .++||+|++||+|+|..
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~l~~~~~~fD~V~~~~  111 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQMPFTDERFHIVTCRI  111 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CCCSCTTCEEEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH---HhCCCCCCCEEEEEEhh
Confidence            58899999999443   455533  499999999999984 444322       222332   35799999999999987


Q ss_pred             ee
Q 027661          217 KT  218 (220)
Q Consensus       217 SV  218 (220)
                      ++
T Consensus       112 ~l  113 (260)
T 1vl5_A          112 AA  113 (260)
T ss_dssp             CG
T ss_pred             hh
Confidence            65

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.51  E-value=7.2e-08  Score=78.78  Aligned_cols=84  Identities=23%  Similarity=0.307  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccC
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDL  196 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDL  196 (220)
                      .+..++.+..-+.++.  .+|.+|||+|||++..   +.+.. ..+|+|+|+|+++++. +.++...        ...|.
T Consensus        44 ~~~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~  120 (273)
T 3bus_A           44 DATDRLTDEMIALLDV--RSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADA  120 (273)
T ss_dssp             HHHHHHHHHHHHHSCC--CTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             HHHHHHHHHHHHhcCC--CCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc
Confidence            4455555555666653  3689999999997654   43322 3599999999999983 4443321        11222


Q ss_pred             CCCCCCCCCCCCcceEEEeeee
Q 027661          197 NLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       197 N~~p~LPFeDnSFDaVtcsvSV  218 (220)
                         .++||++++||+|+|...+
T Consensus       121 ---~~~~~~~~~fD~v~~~~~l  139 (273)
T 3bus_A          121 ---MDLPFEDASFDAVWALESL  139 (273)
T ss_dssp             ---TSCCSCTTCEEEEEEESCT
T ss_pred             ---ccCCCCCCCccEEEEechh
Confidence               3579999999999987654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.51  E-value=8.4e-08  Score=76.60  Aligned_cols=78  Identities=17%  Similarity=0.343  Sum_probs=54.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch----hhhccCCCCCCCC
Q 027661          132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE----YVVQDLNLNPKLP  203 (220)
Q Consensus       132 ~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~----~~VqDLN~~p~LP  203 (220)
                      ..+.+++.+.+++    |.+|||||||.+..   +.+.  ..+|+|+|+|+++++. +.+...    +...|+.   ++|
T Consensus        41 ~~~~~~l~~~~~~----~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~---~~~  111 (242)
T 3l8d_A           41 STIIPFFEQYVKK----EAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLS---SLP  111 (242)
T ss_dssp             TTHHHHHHHHSCT----TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTT---BCS
T ss_pred             HHHHHHHHHHcCC----CCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchh---cCC
Confidence            3456667777874    88999999995544   4432  3599999999999994 443222    1223333   578


Q ss_pred             CCCCCcceEEEeeee
Q 027661          204 FEDNSFDVITNVCKT  218 (220)
Q Consensus       204 FeDnSFDaVtcsvSV  218 (220)
                      +++++||+|+|...+
T Consensus       112 ~~~~~fD~v~~~~~l  126 (242)
T 3l8d_A          112 FENEQFEAIMAINSL  126 (242)
T ss_dssp             SCTTCEEEEEEESCT
T ss_pred             CCCCCccEEEEcChH
Confidence            999999999997654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.49  E-value=9.3e-08  Score=81.35  Aligned_cols=82  Identities=12%  Similarity=0.189  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCC--CCcEEEecCCHHHHh-hCcCcchhh----hccCCCC-
Q 027661          131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYK--QDRIVGMGMNEEELK-RNPVLTEYV----VQDLNLN-  199 (220)
Q Consensus       131 i~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~--~~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~-  199 (220)
                      ++.+..+-++.++    ||.+|||||||.+..   |.+.+.  ..+|+|+|+|++||+ ++.++..+.    ++-+..+ 
T Consensus        57 ~~~i~~l~~~~~~----~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~  132 (261)
T 4gek_A           57 ISMIGMLAERFVQ----PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI  132 (261)
T ss_dssp             HHHHHHHHHHHCC----TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCT
T ss_pred             HHHHHHHHHHhCC----CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccc
Confidence            4444555555665    499999999997643   333332  248999999999998 355554431    1111112 


Q ss_pred             CCCCCCCCCcceEEEeeee
Q 027661          200 PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       200 p~LPFeDnSFDaVtcsvSV  218 (220)
                      .++|++  +||+|+|.+.+
T Consensus       133 ~~~~~~--~~d~v~~~~~l  149 (261)
T 4gek_A          133 RDIAIE--NASMVVLNFTL  149 (261)
T ss_dssp             TTCCCC--SEEEEEEESCG
T ss_pred             cccccc--ccccceeeeee
Confidence            357775  59999998764

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.48  E-value=1.4e-07  Score=76.39  Aligned_cols=76  Identities=16%  Similarity=0.317  Sum_probs=52.2

Q ss_pred             HHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch----hhhccCCCCCCCCCCCCC
Q 027661          137 YYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE----YVVQDLNLNPKLPFEDNS  208 (220)
Q Consensus       137 lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~----~~VqDLN~~p~LPFeDnS  208 (220)
                      ...+.++.  .+|.+|||||||.+..   +.+. ...+|+|+|+++++++. +.++..    +...|+   ..+|+++++
T Consensus        35 ~l~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~  108 (253)
T 3g5l_A           35 ELKKMLPD--FNQKTVLDLGCGFGWHCIYAAEH-GAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAI---EDIAIEPDA  108 (253)
T ss_dssp             HHHTTCCC--CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCG---GGCCCCTTC
T ss_pred             HHHHhhhc--cCCCEEEEECCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhhccCCeEEEEcch---hhCCCCCCC
Confidence            34455653  3588999999996654   3332 33499999999999984 444431    222333   257899999


Q ss_pred             cceEEEeeee
Q 027661          209 FDVITNVCKT  218 (220)
Q Consensus       209 FDaVtcsvSV  218 (220)
                      ||+|+|...+
T Consensus       109 fD~v~~~~~l  118 (253)
T 3g5l_A          109 YNVVLSSLAL  118 (253)
T ss_dssp             EEEEEEESCG
T ss_pred             eEEEEEchhh
Confidence            9999998754

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.46  E-value=9.2e-08  Score=76.21  Aligned_cols=74  Identities=23%  Similarity=0.359  Sum_probs=49.8

Q ss_pred             HhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch----hhhccCCCCCCCCCCCCCcc
Q 027661          139 SEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE----YVVQDLNLNPKLPFEDNSFD  210 (220)
Q Consensus       139 ~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~----~~VqDLN~~p~LPFeDnSFD  210 (220)
                      .+.++.  .++.+|||||||.+..   +.+. +..+|+|+|+|+++++. +.++..    +...|+   .++|+++++||
T Consensus        36 ~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~fD  109 (243)
T 3bkw_A           36 RAMLPE--VGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERADL---DKLHLPQDSFD  109 (243)
T ss_dssp             HHHSCC--CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCG---GGCCCCTTCEE
T ss_pred             HHhccc--cCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEcCh---hhccCCCCCce
Confidence            344553  3588999999995544   4332 23499999999999983 444432    112222   24678999999


Q ss_pred             eEEEeeee
Q 027661          211 VITNVCKT  218 (220)
Q Consensus       211 aVtcsvSV  218 (220)
                      +|+|...+
T Consensus       110 ~v~~~~~l  117 (243)
T 3bkw_A          110 LAYSSLAL  117 (243)
T ss_dssp             EEEEESCG
T ss_pred             EEEEeccc
Confidence            99998654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.46  E-value=9e-08  Score=77.00  Aligned_cols=68  Identities=18%  Similarity=0.247  Sum_probs=48.2

Q ss_pred             CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-----hhccCCCCCCCCCCCCCcceEEEeee
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-----VVQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-----~VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      ++|.+|||+|||.+..   +.+.. ..+|+|+|+|+++++. +.++...     ...|+   .++|+++++||+|+|...
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~  129 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDI---LTKEFPENNFDLIYSRDA  129 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCT---TTCCCCTTCEEEEEEESC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc---ccCCCCCCcEEEEeHHHH
Confidence            3688999999995543   44422 3599999999999983 5544332     22333   356899999999999765


Q ss_pred             e
Q 027661          218 T  218 (220)
Q Consensus       218 V  218 (220)
                      +
T Consensus       130 l  130 (266)
T 3ujc_A          130 I  130 (266)
T ss_dssp             G
T ss_pred             H
Confidence            4

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.45  E-value=7.7e-08  Score=79.05  Aligned_cols=67  Identities=15%  Similarity=0.204  Sum_probs=48.7

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||||||++..   +.+. ...+|+|+|+|+++++. +.++...        ...|+   .++|+++++||+|+|.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~i~~~  121 (267)
T 3kkz_A           46 EKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM---DDLPFRNEELDLIWSE  121 (267)
T ss_dssp             TTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCCCTTCEEEEEES
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh---hhCCCCCCCEEEEEEc
Confidence            589999999996554   5444 44699999999999983 5444332        22333   4678999999999997


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      ..+
T Consensus       122 ~~~  124 (267)
T 3kkz_A          122 GAI  124 (267)
T ss_dssp             SCG
T ss_pred             CCc
Confidence            653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.45  E-value=4.8e-07  Score=71.20  Aligned_cols=77  Identities=23%  Similarity=0.268  Sum_probs=50.9

Q ss_pred             HHHHHHhhCCCCCCCCCeEeeeccchhhccCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCCCCCCcc
Q 027661          134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPFEDNSFD  210 (220)
Q Consensus       134 LT~lY~~~lp~~~~pG~~VLDLccSWvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPFeDnSFD  210 (220)
                      ..++..+.++    ++.+|||+|||.+..... ++..+|+|+|.|+++++. +.++..  +...|+   .++|+++++||
T Consensus        26 ~~~~l~~~~~----~~~~vLdiG~G~G~~~~~-l~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~fD   97 (211)
T 2gs9_A           26 EERALKGLLP----PGESLLEVGAGTGYWLRR-LPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWG---EALPFPGESFD   97 (211)
T ss_dssp             HHHHHHTTCC----CCSEEEEETCTTCHHHHH-CCCSEEEEECCCHHHHHHHHHHCTTSEEECCCT---TSCCSCSSCEE
T ss_pred             HHHHHHHhcC----CCCeEEEECCCCCHhHHh-CCCCeEEEEeCCHHHHHHHHHhCCCcEEEEccc---ccCCCCCCcEE
Confidence            3344555554    488999999996544211 122489999999999984 443321  122332   35789999999


Q ss_pred             eEEEeeee
Q 027661          211 VITNVCKT  218 (220)
Q Consensus       211 aVtcsvSV  218 (220)
                      +|+|...+
T Consensus        98 ~v~~~~~l  105 (211)
T 2gs9_A           98 VVLLFTTL  105 (211)
T ss_dssp             EEEEESCT
T ss_pred             EEEEcChh
Confidence            99998654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.45  E-value=4.4e-08  Score=84.17  Aligned_cols=71  Identities=18%  Similarity=0.174  Sum_probs=54.5

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcchh-----hhccCCCCCCCCCCCCCcceEEEee
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEY-----VVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~-----~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +||++|||||||   .++|+.+-+++ |+|+|+|+++++++. ..+..+.     +..|.+.....|+.+++||+|+|.+
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~  155 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADV  155 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEec
Confidence            589999999999   77888887766 999999999999973 3333322     2245555557789999999999865


Q ss_pred             e
Q 027661          217 K  217 (220)
Q Consensus       217 S  217 (220)
                      .
T Consensus       156 ~  156 (233)
T 4df3_A          156 A  156 (233)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.45  E-value=1.1e-07  Score=73.67  Aligned_cols=79  Identities=9%  Similarity=0.125  Sum_probs=50.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCC-CCC-
Q 027661          132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLN-PKL-  202 (220)
Q Consensus       132 ~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~-p~L-  202 (220)
                      ....++.+..++    +|.+|||+|||.+..   +.+.  .++|+|+|+|+++++ ++.++.+.-+.+   ++.. ..+ 
T Consensus        10 ~~~~~~l~~~~~----~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~   83 (185)
T 3mti_A           10 HMSHDFLAEVLD----DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD   83 (185)
T ss_dssp             HHHHHHHHTTCC----TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG
T ss_pred             HHHHHHHHHhCC----CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH
Confidence            334445555565    489999999995544   5553  579999999999998 355554321111   1111 122 


Q ss_pred             CCCCCCcceEEEee
Q 027661          203 PFEDNSFDVITNVC  216 (220)
Q Consensus       203 PFeDnSFDaVtcsv  216 (220)
                      ++.+++||+|++..
T Consensus        84 ~~~~~~fD~v~~~~   97 (185)
T 3mti_A           84 HYVREPIRAAIFNL   97 (185)
T ss_dssp             GTCCSCEEEEEEEE
T ss_pred             hhccCCcCEEEEeC
Confidence            25588999999875

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.44  E-value=2.3e-07  Score=76.03  Aligned_cols=83  Identities=19%  Similarity=0.312  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCC
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKL  202 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~L  202 (220)
                      ...+.+.++..+.++.   ++.+|||+|||.+..   +.+.+...+|+|+|+++++++. +.+...  +.+.|.   ..+
T Consensus        69 ~~~~~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~  142 (269)
T 1p91_A           69 PLRDAIVAQLRERLDD---KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRL  142 (269)
T ss_dssp             HHHHHHHHHHHHHSCT---TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT---TSC
T ss_pred             HHHHHHHHHHHHhcCC---CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcch---hhC
Confidence            4566677777777753   488999999995543   4443334699999999999984 333322  222333   257


Q ss_pred             CCCCCCcceEEEeee
Q 027661          203 PFEDNSFDVITNVCK  217 (220)
Q Consensus       203 PFeDnSFDaVtcsvS  217 (220)
                      ||++++||+|+|..+
T Consensus       143 ~~~~~~fD~v~~~~~  157 (269)
T 1p91_A          143 PFSDTSMDAIIRIYA  157 (269)
T ss_dssp             SBCTTCEEEEEEESC
T ss_pred             CCCCCceeEEEEeCC
Confidence            899999999998643

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.44  E-value=1.8e-07  Score=73.27  Aligned_cols=68  Identities=19%  Similarity=0.264  Sum_probs=51.0

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||+|||.+.   ++.+.  ..+|+|+|+|+++++. +.++.++...|+.. ..+|+++++||+|+|...+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~fD~v~~~~~l  103 (230)
T 3cc8_A           32 EWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKLDHVVLGDIET-MDMPYEEEQFDCVIFGDVL  103 (230)
T ss_dssp             TCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTSSEEEESCTTT-CCCCSCTTCEEEEEEESCG
T ss_pred             CCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCcEEEcchhh-cCCCCCCCccCEEEECChh
Confidence            47899999999544   34443  3699999999999994 65665555566553 3478999999999997543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.44  E-value=3.9e-08  Score=79.84  Aligned_cols=69  Identities=16%  Similarity=0.087  Sum_probs=46.1

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--hhccCCCC-CCC--CCCCCCcceEEE-eee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--VVQDLNLN-PKL--PFEDNSFDVITN-VCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--~VqDLN~~-p~L--PFeDnSFDaVtc-svS  217 (220)
                      +|.+|||||||.+..   +.+ ....+|+|+|+|+++++. +.+....  -+.-+..+ .++  ||+|++||+|+| +++
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~  138 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQE-APIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  138 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHT-SCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             CCCeEEEEeccCCHHHHHHHh-cCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence            488999999996544   532 233589999999999983 4443221  11222222 134  899999999999 554

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.43  E-value=1.6e-07  Score=78.12  Aligned_cols=67  Identities=19%  Similarity=0.182  Sum_probs=47.1

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||++..   +.+.. ..+|+|+|+|+++++. +.++...        ...|+   .++||++++||+|+|.
T Consensus        82 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~  157 (297)
T 2o57_A           82 RQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEIPCEDNSYDFIWSQ  157 (297)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSCSSCTTCEEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc---ccCCCCCCCEeEEEec
Confidence            588999999996554   33322 2499999999999983 4443221        12222   3689999999999998


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      ..+
T Consensus       158 ~~l  160 (297)
T 2o57_A          158 DAF  160 (297)
T ss_dssp             SCG
T ss_pred             chh
Confidence            654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.42  E-value=1.1e-07  Score=76.76  Aligned_cols=94  Identities=19%  Similarity=0.149  Sum_probs=59.1

Q ss_pred             cCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhh
Q 027661          117 YETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV  192 (220)
Q Consensus       117 Y~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~  192 (220)
                      +...|....+-+..++.|.+...  +    .+|.+|||+|||.+.   ++.+.+ ..+|+|+|+++++++. +.++...-
T Consensus        11 ~~~~~~~~~~~~~~~~~l~~~~~--~----~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~   83 (256)
T 1nkv_A           11 ESEHRIHNPFTEEKYATLGRVLR--M----KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELG   83 (256)
T ss_dssp             TSSCSSSSSCCHHHHHHHHHHTC--C----CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             cCCccccCCCCHHHHHHHHHhcC--C----CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcC
Confidence            44555556666666666655432  2    258899999999543   354433 3589999999999984 44443221


Q ss_pred             ----hccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          193 ----VQDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       193 ----VqDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                          +.-...+ .++|+ +++||+|+|..++
T Consensus        84 ~~~~v~~~~~d~~~~~~-~~~fD~V~~~~~~  113 (256)
T 1nkv_A           84 VSERVHFIHNDAAGYVA-NEKCDVAACVGAT  113 (256)
T ss_dssp             CTTTEEEEESCCTTCCC-SSCEEEEEEESCG
T ss_pred             CCcceEEEECChHhCCc-CCCCCEEEECCCh
Confidence                1111111 35677 9999999996543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.42  E-value=1.1e-07  Score=75.48  Aligned_cols=68  Identities=15%  Similarity=0.094  Sum_probs=47.7

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcch------------hhhccCCCCCCCCCCCCCcce
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTE------------YVVQDLNLNPKLPFEDNSFDV  211 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~------------~~VqDLN~~p~LPFeDnSFDa  211 (220)
                      ++.+|||||||.+.   ++.+.....+|+|+|+|+++++. +.++..            +...|+   ..+|+++++||+
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~  105 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL---VYRDKRFSGYDA  105 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS---SSCCGGGTTCSE
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc---cccccccCCCCE
Confidence            37799999999443   45444334699999999999993 444332            122233   467888999999


Q ss_pred             EEEeeee
Q 027661          212 ITNVCKT  218 (220)
Q Consensus       212 VtcsvSV  218 (220)
                      |+|...+
T Consensus       106 V~~~~~l  112 (219)
T 3jwg_A          106 ATVIEVI  112 (219)
T ss_dssp             EEEESCG
T ss_pred             EEEHHHH
Confidence            9997654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.40  E-value=3.8e-07  Score=73.72  Aligned_cols=65  Identities=18%  Similarity=0.209  Sum_probs=45.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCCC-CCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPFE-DNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPFe-DnSFDaVtcsv  216 (220)
                      +|.+|||+|||.+.+   +.+.  ..+|+|+|+|+++++. +.+...  +...|+.  -.+||+ +++||+|+|..
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~--~~~~~~~~~~fD~v~~~~  119 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGK--GELPAGLGAPFGLIVSRR  119 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSC--SSCCTTCCCCEEEEEEES
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchh--hccCCcCCCCEEEEEeCC
Confidence            388999999995544   5443  3599999999999983 333222  2223432  358898 99999999863

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.39  E-value=7.5e-08  Score=79.02  Aligned_cols=68  Identities=22%  Similarity=0.339  Sum_probs=47.9

Q ss_pred             CCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +|.+|||||||.+   .++.+.....+|+|+|+|+++++. +.++...       ...|+   .++|+++++||+|+|..
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~  113 (276)
T 3mgg_A           37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI---FSLPFEDSSFDHIFVCF  113 (276)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG---GGCCSCTTCEEEEEEES
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccc---ccCCCCCCCeeEEEEec
Confidence            5899999999943   444443334699999999999983 4444322       12222   26789999999999976


Q ss_pred             ee
Q 027661          217 KT  218 (220)
Q Consensus       217 SV  218 (220)
                      .+
T Consensus       114 ~l  115 (276)
T 3mgg_A          114 VL  115 (276)
T ss_dssp             CG
T ss_pred             hh
Confidence            54

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.38  E-value=1.3e-07  Score=76.93  Aligned_cols=67  Identities=24%  Similarity=0.335  Sum_probs=47.7

Q ss_pred             CCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          147 TPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++|.+|||+|||.+   .++.+..  .+|+|+|+++++++. +.++.+.       ...|.   .++||++++||+|+|.
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~v~~~   94 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESLPFPDDSFDIITCR   94 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBCCSCTTCEEEEEEE
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc---ccCCCCCCcEEEEEEC
Confidence            35899999999954   3454433  499999999999984 4443222       22333   3589999999999998


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      ..+
T Consensus        95 ~~l   97 (239)
T 1xxl_A           95 YAA   97 (239)
T ss_dssp             SCG
T ss_pred             Cch
Confidence            654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.38  E-value=5.5e-08  Score=78.56  Aligned_cols=67  Identities=15%  Similarity=0.217  Sum_probs=48.0

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh--------hccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--------VQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--------VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||||||.+..   +.+.. +++|+|+|+|+++++. +.++.+..        ..|.   ..+||++++||+|+|.
T Consensus        46 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~  121 (257)
T 3f4k_A           46 DDAKIADIGCGTGGQTLFLADYV-KGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM---DNLPFQNEELDLIWSE  121 (257)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHC-CSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCSSCTTCEEEEEEE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhCCCCCCCEEEEEec
Confidence            588999999995544   43332 2499999999999984 55443321        2232   4678999999999998


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      ..+
T Consensus       122 ~~l  124 (257)
T 3f4k_A          122 GAI  124 (257)
T ss_dssp             SCS
T ss_pred             ChH
Confidence            654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.38  E-value=4.9e-08  Score=78.59  Aligned_cols=78  Identities=18%  Similarity=0.204  Sum_probs=50.5

Q ss_pred             HHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch------------------
Q 027661          133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE------------------  190 (220)
Q Consensus       133 ~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~------------------  190 (220)
                      .|.++..++-.+   +|.+|||+|||.+.+   |.+.  ..+|+|+|+|++||+. +.+...                  
T Consensus        10 ~l~~~~~~l~~~---~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v   84 (203)
T 1pjz_A           10 DLQQYWSSLNVV---PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI   84 (203)
T ss_dssp             HHHHHHHHHCCC---TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred             HHHHHHHhcccC---CCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCcc
Confidence            344555554221   488999999996654   4432  2489999999999993 333211                  


Q ss_pred             -hhhccCCCCCCCCCCC-CCcceEEEeeee
Q 027661          191 -YVVQDLNLNPKLPFED-NSFDVITNVCKT  218 (220)
Q Consensus       191 -~~VqDLN~~p~LPFeD-nSFDaVtcsvSV  218 (220)
                       +.+.|+   .++|+++ ++||+|+|..+.
T Consensus        85 ~~~~~d~---~~l~~~~~~~fD~v~~~~~l  111 (203)
T 1pjz_A           85 EIWCGDF---FALTARDIGHCAAFYDRAAM  111 (203)
T ss_dssp             EEEEECC---SSSTHHHHHSEEEEEEESCG
T ss_pred             EEEECcc---ccCCcccCCCEEEEEECcch
Confidence             111222   3688887 899999986543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.36  E-value=5.1e-07  Score=73.77  Aligned_cols=78  Identities=15%  Similarity=0.227  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCC
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKL  202 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~L  202 (220)
                      ...+.+.++..+.+++    +.+|||||||.+..   +.+.  ..+|+|+|+|+++++. +.++..  +...|+.   ++
T Consensus        35 ~~~~~~~~~l~~~~~~----~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~---~~  105 (263)
T 3pfg_A           35 REAADLAALVRRHSPK----AASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRNPDAVLHHGDMR---DF  105 (263)
T ss_dssp             HHHHHHHHHHHHHCTT----CCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHCTTSEEEECCTT---TC
T ss_pred             HHHHHHHHHHHhhCCC----CCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCEEEECChH---HC
Confidence            3445667777777774    78999999996655   4443  3589999999999983 443332  2223333   46


Q ss_pred             CCCCCCcceEEEee
Q 027661          203 PFEDNSFDVITNVC  216 (220)
Q Consensus       203 PFeDnSFDaVtcsv  216 (220)
                      |+ +++||+|+|..
T Consensus       106 ~~-~~~fD~v~~~~  118 (263)
T 3pfg_A          106 SL-GRRFSAVTCMF  118 (263)
T ss_dssp             CC-SCCEEEEEECT
T ss_pred             Cc-cCCcCEEEEcC
Confidence            66 89999999976

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.36  E-value=2.9e-07  Score=74.13  Aligned_cols=86  Identities=13%  Similarity=0.122  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcc------hhhhccC
Q 027661          127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLT------EYVVQDL  196 (220)
Q Consensus       127 Dd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~------~~~VqDL  196 (220)
                      .....+.+.+...+.+... .++.+|||+|||.+.   ++.+.  ..+|+|+|.|+++++. +.++.      .+.+.|.
T Consensus        19 ~~~~~~~~~~~l~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~   95 (263)
T 2yqz_A           19 PPEVAGQIATAMASAVHPK-GEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADA   95 (263)
T ss_dssp             CHHHHHHHHHHHHHHCCCS-SSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT
T ss_pred             ChHHHHHHHHHHHHhhcCC-CCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEccc
Confidence            3455555555553312111 258899999999544   34443  3699999999999984 44331      1122333


Q ss_pred             CCCCCCCCCCCCcceEEEeeee
Q 027661          197 NLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       197 N~~p~LPFeDnSFDaVtcsvSV  218 (220)
                         .++||++++||+|+|..++
T Consensus        96 ---~~~~~~~~~fD~v~~~~~l  114 (263)
T 2yqz_A           96 ---RAIPLPDESVHGVIVVHLW  114 (263)
T ss_dssp             ---TSCCSCTTCEEEEEEESCG
T ss_pred             ---ccCCCCCCCeeEEEECCch
Confidence               3578999999999998654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.35  E-value=6.5e-07  Score=72.44  Aligned_cols=70  Identities=16%  Similarity=0.017  Sum_probs=48.0

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||.+..   +.... ..+|+|+|+|+++++. +.++...-   +.-...+ ..+|+++++||+|+|...+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  156 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  156 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence            588999999995543   55543 4699999999999983 54444320   1111111 3578889999999998653

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.34  E-value=4.1e-07  Score=74.80  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcc-hhhhccCCCCCCCCCC
Q 027661          131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLT-EYVVQDLNLNPKLPFE  205 (220)
Q Consensus       131 i~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~-~~~VqDLN~~p~LPFe  205 (220)
                      .+.+.++..+.+++    +.+|||||||.+..   +.+.  ..+|+|+|+|+++++. +.+.. .+...|+.   ++|++
T Consensus        41 ~~~~~~~l~~~~~~----~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~---~~~~~  111 (260)
T 2avn_A           41 HRLIGSFLEEYLKN----PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAE---DLPFP  111 (260)
T ss_dssp             HHHHHHHHHHHCCS----CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTT---SCCSC
T ss_pred             HHHHHHHHHHhcCC----CCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHH---HCCCC
Confidence            34566667777763    78999999996554   4442  3589999999999983 33332 22233332   57899


Q ss_pred             CCCcceEEEee
Q 027661          206 DNSFDVITNVC  216 (220)
Q Consensus       206 DnSFDaVtcsv  216 (220)
                      +++||+|+|..
T Consensus       112 ~~~fD~v~~~~  122 (260)
T 2avn_A          112 SGAFEAVLALG  122 (260)
T ss_dssp             TTCEEEEEECS
T ss_pred             CCCEEEEEEcc
Confidence            99999999864

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.34  E-value=2.1e-07  Score=70.77  Aligned_cols=71  Identities=17%  Similarity=0.057  Sum_probs=46.4

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhc---cCCCC--CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLN--PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~--p~LPFeDnSFDaVtcsvSV  218 (220)
                      +|.+|||+|||.+..   +....+..+|+|+|+|+++++. +.++.+.-..   .++.+  ..+|..+++||+|+|..+.
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~  104 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL  104 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcc
Confidence            588999999995544   4454445799999999999983 4443332111   12222  2445555899999998764

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.32  E-value=1.9e-07  Score=74.19  Aligned_cols=68  Identities=13%  Similarity=0.093  Sum_probs=46.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch------------hhhccCCCCCCCCCCCCCcce
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE------------YVVQDLNLNPKLPFEDNSFDV  211 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~------------~~VqDLN~~p~LPFeDnSFDa  211 (220)
                      ++.+|||||||.+..   +.+.....+|+|+|+|+++++. +.++..            +...|+   ..+++++++||+
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~  105 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL---TYQDKRFHGYDA  105 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT---TSCCGGGCSCSE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc---ccccccCCCcCE
Confidence            377999999995544   4433333699999999999983 444321            122232   456778899999


Q ss_pred             EEEeeee
Q 027661          212 ITNVCKT  218 (220)
Q Consensus       212 VtcsvSV  218 (220)
                      |+|...+
T Consensus       106 v~~~~~l  112 (217)
T 3jwh_A          106 ATVIEVI  112 (217)
T ss_dssp             EEEESCG
T ss_pred             EeeHHHH
Confidence            9997654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.31  E-value=3.1e-07  Score=74.25  Aligned_cols=67  Identities=15%  Similarity=0.069  Sum_probs=45.2

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      +|.+|||||||++..   +.+.  ..+|+|+|+|+++++. +.++ ++...|... ...||++++||+|+|...+
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~-~~~~~d~~~-~~~~~~~~~fD~i~~~~~l  111 (240)
T 3dli_A           41 GCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGKF-NVVKSDAIE-YLKSLPDKYLDGVMISHFV  111 (240)
T ss_dssp             TCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTTS-EEECSCHHH-HHHTSCTTCBSEEEEESCG
T ss_pred             CCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhhc-ceeeccHHH-HhhhcCCCCeeEEEECCch
Confidence            478999999997766   3331  3489999999999994 4442 111111111 1128999999999997654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.29  E-value=3.3e-07  Score=76.95  Aligned_cols=83  Identities=19%  Similarity=0.402  Sum_probs=52.9

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh--------hh
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY--------VV  193 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~--------~V  193 (220)
                      +++...+.+..+.+.+ ..  ++|.+||||||||+..   +.+..+ .+|+|+|+|+++++ ++.++.+.        ..
T Consensus        53 l~~a~~~~~~~~~~~~-~~--~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~  128 (302)
T 3hem_A           53 LEEAQYAKRKLALDKL-NL--EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI  128 (302)
T ss_dssp             HHHHHHHHHHHHHHTT-CC--CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHc-CC--CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence            4444444554444444 22  3689999999997765   333222 58999999999998 35544332        22


Q ss_pred             ccCCCCCCCCCCCCCcceEEEeeee
Q 027661          194 QDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       194 qDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      .|..     .+ +++||+|+|...+
T Consensus       129 ~d~~-----~~-~~~fD~v~~~~~~  147 (302)
T 3hem_A          129 QGWE-----EF-DEPVDRIVSLGAF  147 (302)
T ss_dssp             CCGG-----GC-CCCCSEEEEESCG
T ss_pred             CCHH-----Hc-CCCccEEEEcchH
Confidence            2322     23 8999999997654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.28  E-value=5.9e-07  Score=69.81  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=50.8

Q ss_pred             HHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch-----hhhccCCCCCCCCC
Q 027661          134 LTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE-----YVVQDLNLNPKLPF  204 (220)
Q Consensus       134 LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~-----~~VqDLN~~p~LPF  204 (220)
                      +.++..+.+++    +.+|||+|||.+..   +.+. +..+|+|+|+|+++++. +.++..     +.+.|.   .++|+
T Consensus        32 ~~~~l~~~~~~----~~~vLdiGcG~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~---~~~~~  103 (215)
T 2pxx_A           32 FRALLEPELRP----EDRILVLGCGNSALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV---RKLDF  103 (215)
T ss_dssp             HHHHHGGGCCT----TCCEEEETCTTCSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT---TSCCS
T ss_pred             HHHHHHHhcCC----CCeEEEECCCCcHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch---hcCCC
Confidence            55556666754    88999999995443   3332 23489999999999983 433322     112222   34689


Q ss_pred             CCCCcceEEEeee
Q 027661          205 EDNSFDVITNVCK  217 (220)
Q Consensus       205 eDnSFDaVtcsvS  217 (220)
                      ++++||+|+|...
T Consensus       104 ~~~~fD~v~~~~~  116 (215)
T 2pxx_A          104 PSASFDVVLEKGT  116 (215)
T ss_dssp             CSSCEEEEEEESH
T ss_pred             CCCcccEEEECcc
Confidence            9999999998643

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.28  E-value=1.9e-07  Score=82.52  Aligned_cols=71  Identities=15%  Similarity=0.240  Sum_probs=48.8

Q ss_pred             CCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHhh-CcCcch---------------hhhccCCCCCCC---CC
Q 027661          148 PGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELKR-NPVLTE---------------YVVQDLNLNPKL---PF  204 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELaa-N~rL~~---------------~~VqDLN~~p~L---PF  204 (220)
                      +|.+|||||||.+.   ++.+.++ ..+|+|+|+++++++. +.++..               +...|+.....+   ||
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~  162 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV  162 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence            58899999999554   4444332 3599999999999983 544321               222344332233   99


Q ss_pred             CCCCcceEEEeeee
Q 027661          205 EDNSFDVITNVCKT  218 (220)
Q Consensus       205 eDnSFDaVtcsvSV  218 (220)
                      ++++||+|+|...+
T Consensus       163 ~~~~fD~V~~~~~l  176 (383)
T 4fsd_A          163 PDSSVDIVISNCVC  176 (383)
T ss_dssp             CTTCEEEEEEESCG
T ss_pred             CCCCEEEEEEccch
Confidence            99999999997654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.27  E-value=2.6e-07  Score=75.52  Aligned_cols=70  Identities=19%  Similarity=0.243  Sum_probs=46.5

Q ss_pred             CCCeEeeeccchhhc---cCCCCCC-CcEEEecCCHH------HHh-hCcCcch--------hhhccCCC-CCCCCCCCC
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEE------ELK-RNPVLTE--------YVVQDLNL-NPKLPFEDN  207 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN~e------ELa-aN~rL~~--------~~VqDLN~-~p~LPFeDn  207 (220)
                      +|.+|||||||++.+   +.+..++ .+|+|+|+|++      +++ ++.++..        +...| .. ...+||+++
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~  121 (275)
T 3bkx_A           43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT-NLSDDLGPIADQ  121 (275)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC-CTTTCCGGGTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC-hhhhccCCCCCC
Confidence            589999999997665   3333222 69999999987      555 2333322        12222 11 246899999


Q ss_pred             CcceEEEeeee
Q 027661          208 SFDVITNVCKT  218 (220)
Q Consensus       208 SFDaVtcsvSV  218 (220)
                      +||+|+|...+
T Consensus       122 ~fD~v~~~~~l  132 (275)
T 3bkx_A          122 HFDRVVLAHSL  132 (275)
T ss_dssp             CCSEEEEESCG
T ss_pred             CEEEEEEccch
Confidence            99999987543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.27  E-value=1.3e-07  Score=74.65  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=47.2

Q ss_pred             CCCeEeeeccchhhc---cCCCC-CCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGY-KQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v-~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||.+..   +.+.. ...+|+|+|.|+++++. +.++...       ...|+   ..+|+++++||+|+|.
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~  113 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE---NKIPLPDNTVDFIFMA  113 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT---TBCSSCSSCEEEEEEE
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc---ccCCCCCCCeeEEEee
Confidence            488999999995543   33222 12599999999999983 5544332       12222   3578999999999997


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      ..+
T Consensus       114 ~~l  116 (219)
T 3dh0_A          114 FTF  116 (219)
T ss_dssp             SCG
T ss_pred             hhh
Confidence            654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.26  E-value=4.9e-07  Score=76.61  Aligned_cols=78  Identities=14%  Similarity=0.204  Sum_probs=52.3

Q ss_pred             HHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCCCC
Q 027661          136 KYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPKLP  203 (220)
Q Consensus       136 ~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~LP  203 (220)
                      +...+.++.. ++|.+|||+|||++..   +.+.. ..+|+|+|+++++++. +.++...        ...|+   .++|
T Consensus       106 ~~l~~~l~~~-~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~  180 (312)
T 3vc1_A          106 EFLMDHLGQA-GPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM---LDTP  180 (312)
T ss_dssp             HHHHTTSCCC-CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCC
T ss_pred             HHHHHHhccC-CCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hcCC
Confidence            4445555411 3689999999996554   43322 3589999999999983 4443322        22333   3678


Q ss_pred             CCCCCcceEEEeeee
Q 027661          204 FEDNSFDVITNVCKT  218 (220)
Q Consensus       204 FeDnSFDaVtcsvSV  218 (220)
                      |++++||+|+|...+
T Consensus       181 ~~~~~fD~V~~~~~l  195 (312)
T 3vc1_A          181 FDKGAVTASWNNEST  195 (312)
T ss_dssp             CCTTCEEEEEEESCG
T ss_pred             CCCCCEeEEEECCch
Confidence            999999999997654

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.26  E-value=3.5e-07  Score=76.70  Aligned_cols=68  Identities=13%  Similarity=0.216  Sum_probs=47.2

Q ss_pred             CCCeEeeeccchhhc---cCCCC-CCCcEEEecCCHHHHhh-CcCcch---------hhhccCCCCCCCCCCC------C
Q 027661          148 PGVSILDLCSSWVSH---FPPGY-KQDRIVGMGMNEEELKR-NPVLTE---------YVVQDLNLNPKLPFED------N  207 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v-~~~~VVGLGmN~eELaa-N~rL~~---------~~VqDLN~~p~LPFeD------n  207 (220)
                      ++.+|||||||.+..   +.+.+ ...+|+|+|+|+++++. +.++..         +.+.|+.   ++|+++      +
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~~~~~  112 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD---DFKFLGADSVDKQ  112 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT---CCGGGCTTTTTSS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH---hCCccccccccCC
Confidence            488999999995544   44322 34699999999999983 443322         2223333   466777      9


Q ss_pred             CcceEEEeeee
Q 027661          208 SFDVITNVCKT  218 (220)
Q Consensus       208 SFDaVtcsvSV  218 (220)
                      +||+|+|...+
T Consensus       113 ~fD~V~~~~~l  123 (299)
T 3g5t_A          113 KIDMITAVECA  123 (299)
T ss_dssp             CEEEEEEESCG
T ss_pred             CeeEEeHhhHH
Confidence            99999998654

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.25  E-value=1.7e-07  Score=79.24  Aligned_cols=90  Identities=11%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch---------
Q 027661          124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE---------  190 (220)
Q Consensus       124 tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~---------  190 (220)
                      ..+.+..+..+.+.....+++    +.+|||||||.+.+   +.. ....+|+|+|+++++++. +.++..         
T Consensus        14 ~~~k~~l~~~~~~~l~~~~~~----~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~   88 (313)
T 3bgv_A           14 NWMKSVLIGEFLEKVRQKKKR----DITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY   88 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHTC------CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-C
T ss_pred             HHHHHHHHHHHHHHhhhccCC----CCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccc
Confidence            334445555555555555543    78999999996655   332 124699999999999983 444332         


Q ss_pred             -----hhhccCCCCC-CCCC--CCCCcceEEEeeee
Q 027661          191 -----YVVQDLNLNP-KLPF--EDNSFDVITNVCKT  218 (220)
Q Consensus       191 -----~~VqDLN~~p-~LPF--eDnSFDaVtcsvSV  218 (220)
                           +.+.|+...+ .-||  ++++||+|+|..++
T Consensus        89 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l  124 (313)
T 3bgv_A           89 IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVC  124 (313)
T ss_dssp             CCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCG
T ss_pred             cceEEEEEecccccchhhhcccCCCCEEEEEEecch
Confidence                 2334443322 1135  45699999998765

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.24  E-value=1.7e-07  Score=77.62  Aligned_cols=68  Identities=10%  Similarity=0.093  Sum_probs=45.3

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh----ccCCCC-CCCC-CCCCCcceEEEeeee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV----QDLNLN-PKLP-FEDNSFDVITNVCKT  218 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V----qDLN~~-p~LP-FeDnSFDaVtcsvSV  218 (220)
                      +.+|||||||.+..   +.+.  ..+|+|+|+++++++. +.++....+    .-+..+ .++| +.+++||+|+|...+
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  146 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL  146 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred             CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence            78999999995544   4443  3599999999999983 544433211    111111 2455 889999999997654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.24  E-value=6.7e-07  Score=70.40  Aligned_cols=72  Identities=18%  Similarity=0.236  Sum_probs=49.4

Q ss_pred             HHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh------------hhccCCCCCC
Q 027661          138 YSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY------------VVQDLNLNPK  201 (220)
Q Consensus       138 Y~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~------------~VqDLN~~p~  201 (220)
                      ..+.+++    +.+|||+|||.+..   +...  ..+|+|+|+|+++++. +.++...            ...|+   ..
T Consensus        24 ~~~~~~~----~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~---~~   94 (235)
T 3sm3_A           24 IHNYLQE----DDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA---SS   94 (235)
T ss_dssp             HHHHCCT----TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT---TS
T ss_pred             HHHhCCC----CCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc---cc
Confidence            4445654    88999999995443   4332  3599999999999883 4433321            12222   36


Q ss_pred             CCCCCCCcceEEEeeee
Q 027661          202 LPFEDNSFDVITNVCKT  218 (220)
Q Consensus       202 LPFeDnSFDaVtcsvSV  218 (220)
                      +|+++++||+|+|...+
T Consensus        95 ~~~~~~~~D~v~~~~~l  111 (235)
T 3sm3_A           95 LSFHDSSFDFAVMQAFL  111 (235)
T ss_dssp             CCSCTTCEEEEEEESCG
T ss_pred             cCCCCCceeEEEEcchh
Confidence            78999999999997543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.23  E-value=2.2e-07  Score=72.23  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=50.7

Q ss_pred             HHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCC
Q 027661          134 LTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPK  201 (220)
Q Consensus       134 LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~  201 (220)
                      +.+...+.++.  +++ +|||+|||.+..   +.+. ...+|+|+|.|+++++. +.++...        ...|+   .+
T Consensus        32 ~~~~~~~~~~~--~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~  104 (219)
T 3dlc_A           32 IAENIINRFGI--TAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV---HN  104 (219)
T ss_dssp             HHHHHHHHHCC--CEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT---TB
T ss_pred             HHHHHHHhcCC--CCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH---HH
Confidence            33333444443  235 999999995543   4332 23599999999999983 5544332        11222   35


Q ss_pred             CCCCCCCcceEEEeeee
Q 027661          202 LPFEDNSFDVITNVCKT  218 (220)
Q Consensus       202 LPFeDnSFDaVtcsvSV  218 (220)
                      +||++++||+|+|...+
T Consensus       105 ~~~~~~~~D~v~~~~~l  121 (219)
T 3dlc_A          105 IPIEDNYADLIVSRGSV  121 (219)
T ss_dssp             CSSCTTCEEEEEEESCG
T ss_pred             CCCCcccccEEEECchH
Confidence            78999999999998654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.23  E-value=8.4e-07  Score=70.86  Aligned_cols=71  Identities=20%  Similarity=0.273  Sum_probs=47.1

Q ss_pred             CCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhh-hccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          147 TPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV-VQDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       147 ~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~-VqDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      .++.+|||+|||.+.   ++.+.....+|+|+|+|+++++. +.++.... +.-...+ .++|++ ++||+|+|...+
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l  119 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-EKYDMVVSALSI  119 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-SCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-CCceEEEEeCcc
Confidence            358899999999443   34443334699999999999983 55444321 1111222 356777 999999998654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.21  E-value=4.2e-07  Score=69.24  Aligned_cols=65  Identities=18%  Similarity=0.048  Sum_probs=45.5

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||+|||.+..   +.+..  .+|+|+|+|+++++. +.+...  +.-.+.+  +|+++++||+|+|...+
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~--v~~~~~d--~~~~~~~~D~v~~~~~l   85 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKFDS--VITLSDP--KEIPDNSVDFILFANSF   85 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHHCTT--SEEESSG--GGSCTTCEEEEEEESCS
T ss_pred             CCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHhCCC--cEEEeCC--CCCCCCceEEEEEccch
Confidence            478999999995544   44433  399999999999984 333221  1111222  89999999999998654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.20  E-value=9.9e-07  Score=68.88  Aligned_cols=82  Identities=21%  Similarity=0.284  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc-c--CCCCCCCcEEEecCCHHHHhh-CcCcch------hhhccC
Q 027661          127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-F--PPGYKQDRIVGMGMNEEELKR-NPVLTE------YVVQDL  196 (220)
Q Consensus       127 Dd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH-L--P~~v~~~~VVGLGmN~eELaa-N~rL~~------~~VqDL  196 (220)
                      |.....++-++... ++    ++.+|||+|||.+.. +  -.. ...+|+|+|.|+++++. +.++.+      +...|+
T Consensus         7 ~~~~~~~~~~~~~~-~~----~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~   80 (209)
T 2p8j_A            7 RQPQLYRFLKYCNE-SN----LDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDI   80 (209)
T ss_dssp             SCTHHHHHHHHHHH-SS----SCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCT
T ss_pred             hhhhHHHHHHHHhc-cC----CCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECch
Confidence            34444455444433 33    378999999996554 1  111 12499999999999984 444322      112232


Q ss_pred             CCCCCCCCCCCCcceEEEeee
Q 027661          197 NLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       197 N~~p~LPFeDnSFDaVtcsvS  217 (220)
                         .++|+++++||+|+|...
T Consensus        81 ---~~~~~~~~~fD~v~~~~~   98 (209)
T 2p8j_A           81 ---RKLPFKDESMSFVYSYGT   98 (209)
T ss_dssp             ---TSCCSCTTCEEEEEECSC
T ss_pred             ---hhCCCCCCceeEEEEcCh
Confidence               257899999999998654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.20  E-value=4.9e-07  Score=72.63  Aligned_cols=67  Identities=10%  Similarity=0.057  Sum_probs=46.7

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-----hhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-----VVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-----~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||.+..   +.+.. ..+|+|+|+|+++++. +.++...     ...|+   ..+|+++++||+|+|...+
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l  168 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASM---ETATLPPNTYDLIVIQWTA  168 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCG---GGCCCCSSCEEEEEEESCG
T ss_pred             CCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccH---HHCCCCCCCeEEEEEcchh
Confidence            588999999995544   33221 3579999999999983 4444321     22232   2478999999999998654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.19  E-value=1.6e-06  Score=68.33  Aligned_cols=90  Identities=18%  Similarity=0.283  Sum_probs=55.9

Q ss_pred             CCCccCCCCHHHHHHHH---HHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch-
Q 027661          119 TPRFVTHIDDPAIAALT---KYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE-  190 (220)
Q Consensus       119 ~PRfVtHIDd~ai~~LT---~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~-  190 (220)
                      .|++..-.++.......   +...+.+++    +.+|||||||.+..   +....  .+|+|+|+|+++++. +.++.. 
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~vLDlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~   83 (227)
T 1ve3_A           10 FPTYTDINSQEYRSRIETLEPLLMKYMKK----RGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSR   83 (227)
T ss_dssp             CSTTTCTTSHHHHHHHHHHHHHHHHSCCS----CCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT
T ss_pred             hhhhhcccHHHHHHHHHHHHHHHHHhcCC----CCeEEEEeccCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc
Confidence            34444444555444443   334444543    78999999996544   33322  299999999999883 433321 


Q ss_pred             -----hhhccCCCCCCCCCCCCCcceEEEeee
Q 027661          191 -----YVVQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       191 -----~~VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                           +...|+   .++|+++++||+|+|...
T Consensus        84 ~~~~~~~~~d~---~~~~~~~~~~D~v~~~~~  112 (227)
T 1ve3_A           84 ESNVEFIVGDA---RKLSFEDKTFDYVIFIDS  112 (227)
T ss_dssp             TCCCEEEECCT---TSCCSCTTCEEEEEEESC
T ss_pred             CCCceEEECch---hcCCCCCCcEEEEEEcCc
Confidence                 222333   246788999999998754

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.18  E-value=1.2e-06  Score=69.17  Aligned_cols=65  Identities=12%  Similarity=0.056  Sum_probs=45.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcc---hhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLT---EYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~---~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||+|||.+..   +.+.  ..+|+|+|+|+++++. +.++.   ++...|+   .++|++ ++||+|+|...+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~---~~~~~~-~~fD~v~~~~~l  116 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDF---LSFEVP-TSIDTIVSTYAF  116 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCS---SSCCCC-SCCSEEEEESCG
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCCh---hhcCCC-CCeEEEEECcch
Confidence            378999999996554   3332  3599999999999984 54443   1122232   356787 999999998654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.18  E-value=1.6e-06  Score=68.42  Aligned_cols=98  Identities=11%  Similarity=0.002  Sum_probs=55.5

Q ss_pred             CCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-Cc
Q 027661          111 SPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NP  186 (220)
Q Consensus       111 sdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~  186 (220)
                      -+|..|.....+   ..+..++.+.+.    +..  ++|.+|||+|||.+..   +....+..+|+|+|.|+++++. +.
T Consensus        12 ~~d~~f~~~g~~---~~~~i~~~~l~~----l~~--~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~   82 (204)
T 3e05_A           12 DDDEFATAKKLI---TKQEVRAVTLSK----LRL--QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRD   82 (204)
T ss_dssp             CGGGSCCCTTTS---CCHHHHHHHHHH----TTC--CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHH
T ss_pred             CCcHHhccCCcC---ChHHHHHHHHHH----cCC--CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            355555543333   445554444332    222  3588999999995543   3333234699999999999983 54


Q ss_pred             Ccchhhhcc---CCCCC-CCCCCCCCcceEEEeee
Q 027661          187 VLTEYVVQD---LNLNP-KLPFEDNSFDVITNVCK  217 (220)
Q Consensus       187 rL~~~~VqD---LN~~p-~LPFeDnSFDaVtcsvS  217 (220)
                      ++...-+.+   +..+. +.....++||+|++..+
T Consensus        83 ~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~  117 (204)
T 3e05_A           83 NLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS  117 (204)
T ss_dssp             HHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC
T ss_pred             HHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC
Confidence            443321111   11111 22223478999998754

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.17  E-value=1.5e-06  Score=72.78  Aligned_cols=67  Identities=15%  Similarity=0.249  Sum_probs=47.4

Q ss_pred             CCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcc------hhhhccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLT------EYVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~------~~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      ++.+|||+|||   |...+.+.++. .+|+|+|+++++++. +.++.      ++.+.|+.   ++|+ +++||+|+|..
T Consensus        22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~---~~~~-~~~fD~v~~~~   97 (284)
T 3gu3_A           22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT---EIEL-NDKYDIAICHA   97 (284)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT---TCCC-SSCEEEEEEES
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh---hcCc-CCCeeEEEECC
Confidence            47899999999   55556666553 699999999999973 33322      22334544   4677 46999999976


Q ss_pred             ee
Q 027661          217 KT  218 (220)
Q Consensus       217 SV  218 (220)
                      .+
T Consensus        98 ~l   99 (284)
T 3gu3_A           98 FL   99 (284)
T ss_dssp             CG
T ss_pred             hh
Confidence            53

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.17  E-value=1e-06  Score=69.97  Aligned_cols=76  Identities=16%  Similarity=0.344  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCC
Q 027661          131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPF  204 (220)
Q Consensus       131 i~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPF  204 (220)
                      .+.+.++..+.+++    +.+|||+|||.+.+   +.+..  .+|+|+|+|+++++. +.++..  +...|+.   ++|+
T Consensus        27 ~~~~~~~l~~~~~~----~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~---~~~~   97 (239)
T 3bxo_A           27 ASDIADLVRSRTPE----ASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRLPDATLHQGDMR---DFRL   97 (239)
T ss_dssp             HHHHHHHHHHHCTT----CCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHCTTCEEEECCTT---TCCC
T ss_pred             HHHHHHHHHHhcCC----CCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhCCCCEEEECCHH---Hccc
Confidence            34555566666643    78999999996554   33321  389999999999984 443322  2223433   4566


Q ss_pred             CCCCcceEEEee
Q 027661          205 EDNSFDVITNVC  216 (220)
Q Consensus       205 eDnSFDaVtcsv  216 (220)
                       +++||+|+|..
T Consensus        98 -~~~~D~v~~~~  108 (239)
T 3bxo_A           98 -GRKFSAVVSMF  108 (239)
T ss_dssp             -SSCEEEEEECT
T ss_pred             -CCCCcEEEEcC
Confidence             78999999865

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.16  E-value=2.5e-06  Score=67.23  Aligned_cols=83  Identities=10%  Similarity=0.040  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc---CCCCCC
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD---LNLNPK  201 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~p~  201 (220)
                      .....+.+...+.+++    |.+|||+|||.+..   +.. .+..+|+|+|+|+++++. +.++...-..+   .+.+ -
T Consensus        45 ~~~~~~~~~l~~~~~~----~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d-~  118 (205)
T 3grz_A           45 QTTQLAMLGIERAMVK----PLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTS-L  118 (205)
T ss_dssp             HHHHHHHHHHHHHCSS----CCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESS-T
T ss_pred             ccHHHHHHHHHHhccC----CCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecc-c
Confidence            4445555566666654    88999999995433   333 234699999999999983 44443322111   1111 1


Q ss_pred             CCCCCCCcceEEEeee
Q 027661          202 LPFEDNSFDVITNVCK  217 (220)
Q Consensus       202 LPFeDnSFDaVtcsvS  217 (220)
                      +++.+++||+|+|...
T Consensus       119 ~~~~~~~fD~i~~~~~  134 (205)
T 3grz_A          119 LADVDGKFDLIVANIL  134 (205)
T ss_dssp             TTTCCSCEEEEEEESC
T ss_pred             cccCCCCceEEEECCc
Confidence            3456799999998753

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.15  E-value=2e-06  Score=68.17  Aligned_cols=82  Identities=15%  Similarity=0.041  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCC-C
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLN-P  200 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~-p  200 (220)
                      +..++.+.++.....+    ++.+|||+|||.+.+   +.+.  ..+|+|+|+|+++++. +.++...-  +.-...+ .
T Consensus        21 ~~~~~~~~~~l~~~~~----~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~   94 (246)
T 1y8c_A           21 KKWSDFIIEKCVENNL----VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS   94 (246)
T ss_dssp             HHHHHHHHHHHHTTTC----CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGG
T ss_pred             HHHHHHHHHHHHHhCC----CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccc
Confidence            4455556666555433    378999999996655   4332  2589999999999984 44443211  1111112 2


Q ss_pred             CCCCCCCCcceEEEee
Q 027661          201 KLPFEDNSFDVITNVC  216 (220)
Q Consensus       201 ~LPFeDnSFDaVtcsv  216 (220)
                      ++|++ ++||+|+|..
T Consensus        95 ~~~~~-~~fD~v~~~~  109 (246)
T 1y8c_A           95 NLNIN-RKFDLITCCL  109 (246)
T ss_dssp             GCCCS-CCEEEEEECT
T ss_pred             cCCcc-CCceEEEEcC
Confidence            46776 8999999975

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.15  E-value=7.2e-07  Score=69.78  Aligned_cols=65  Identities=11%  Similarity=0.041  Sum_probs=45.2

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      +.+|||+|||.+..   +.+.  ..+|+|+|+|+++++. +.+...  +...|+   .++|+++++||+|+|...+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l  112 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTI---TDLSDSPKRWAGLLAWYSL  112 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCG---GGGGGSCCCEEEEEEESSS
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcc---cccccCCCCeEEEEehhhH
Confidence            56999999995543   4332  3499999999999983 433322  122332   3578999999999997654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.14  E-value=1.8e-06  Score=69.61  Aligned_cols=37  Identities=14%  Similarity=0.014  Sum_probs=27.2

Q ss_pred             CCCCeEeeeccchhhccCC--CCCCCcEEEecCCHHHHh
Q 027661          147 TPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       147 ~pG~~VLDLccSWvSHLP~--~v~~~~VVGLGmN~eELa  183 (220)
                      .+|.+|||||||.+.+...  .....+|+|+|+|+++++
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~   93 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLW   93 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHH
Confidence            3588999999996555221  112248999999999988

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.13  E-value=1.2e-06  Score=73.37  Aligned_cols=63  Identities=16%  Similarity=0.219  Sum_probs=44.2

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch----------hhhccCCCCCCCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE----------YVVQDLNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~----------~~VqDLN~~p~LPFeDnSFDaVtc  214 (220)
                      +.+|||||||.+..   +.+.  ..+|+|+|+++++++. +.++.+          +.+.|+.   ++|+ +++||+|+|
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~---~~~~-~~~fD~v~~  156 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS---AFAL-DKRFGTVVI  156 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT---BCCC-SCCEEEEEE
T ss_pred             CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh---cCCc-CCCcCEEEE
Confidence            44999999996655   4332  3589999999999983 544433          2234443   4677 799999998


Q ss_pred             eee
Q 027661          215 VCK  217 (220)
Q Consensus       215 svS  217 (220)
                      +..
T Consensus       157 ~~~  159 (299)
T 3g2m_A          157 SSG  159 (299)
T ss_dssp             CHH
T ss_pred             CCc
Confidence            743

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.13  E-value=1.2e-06  Score=72.52  Aligned_cols=65  Identities=17%  Similarity=0.267  Sum_probs=45.3

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||.+.   ++.+  ...+|+|+|+|+++++. +.++..  +.+.|..   .+|+ +++||+|+|...+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~---~~~~-~~~fD~v~~~~~l  127 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADAR---NFRV-DKPLDAVFSNAML  127 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTT---TCCC-SSCEEEEEEESCG
T ss_pred             CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChh---hCCc-CCCcCEEEEcchh
Confidence            47899999999544   3443  33699999999999984 443321  2223333   4677 6899999998654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.13  E-value=1.3e-06  Score=69.03  Aligned_cols=79  Identities=11%  Similarity=0.125  Sum_probs=52.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch-----hhhccCCCCCCC
Q 027661          132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE-----YVVQDLNLNPKL  202 (220)
Q Consensus       132 ~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~-----~~VqDLN~~p~L  202 (220)
                      ..+.++....++.  .++.+|||||||.+..   +.+.  ..+|+|+|+|+++++. +.++..     +...|+.   ++
T Consensus        37 ~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~---~~  109 (216)
T 3ofk_A           37 ERHTQLLRLSLSS--GAVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRWSHISWAATDIL---QF  109 (216)
T ss_dssp             HHHHHHHHHHTTT--SSEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTT---TC
T ss_pred             HHHHHHHHHHccc--CCCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchh---hC
Confidence            3555555656654  3578999999995544   4443  2599999999999983 444432     2223333   34


Q ss_pred             CCCCCCcceEEEeeee
Q 027661          203 PFEDNSFDVITNVCKT  218 (220)
Q Consensus       203 PFeDnSFDaVtcsvSV  218 (220)
                      | ++++||+|+|...+
T Consensus       110 ~-~~~~fD~v~~~~~l  124 (216)
T 3ofk_A          110 S-TAELFDLIVVAEVL  124 (216)
T ss_dssp             C-CSCCEEEEEEESCG
T ss_pred             C-CCCCccEEEEccHH
Confidence            4 68999999998554

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.13  E-value=1.2e-06  Score=71.63  Aligned_cols=68  Identities=13%  Similarity=0.042  Sum_probs=43.0

Q ss_pred             CCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh---h----CcCcchhhhccCCCCCC-CCCCCCCcceEEEe
Q 027661          147 TPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK---R----NPVLTEYVVQDLNLNPK-LPFEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa---a----N~rL~~~~VqDLN~~p~-LPFeDnSFDaVtcs  215 (220)
                      ++|.+|||||||.+   .++.+.++.++|+|+|+|+++++   .    ++.+ .+.+.|...... +|++ ++||+|+|.
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v-~~~~~d~~~~~~~~~~~-~~fD~V~~~  133 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNI-IPLLFDASKPWKYSGIV-EKVDLIYQD  133 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSE-EEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCe-EEEEcCCCCchhhcccc-cceeEEEEe
Confidence            36899999999944   55555444479999999998643   1    1111 112233332211 4565 899999987


Q ss_pred             e
Q 027661          216 C  216 (220)
Q Consensus       216 v  216 (220)
                      +
T Consensus       134 ~  134 (210)
T 1nt2_A          134 I  134 (210)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.13  E-value=1.5e-06  Score=67.84  Aligned_cols=70  Identities=11%  Similarity=0.184  Sum_probs=45.8

Q ss_pred             CCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHhh-CcCcchhh----hccCCCC-CCCC-CCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLN-PKLP-FEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~-p~LP-FeDnSFDaVtcsv  216 (220)
                      +|.+|||+|||.+.   ++.+.++ .++|+|+|+|+++++. +.++.+.-    +.-++.+ .+++ +.+++||+|+|..
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  101 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL  101 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence            48899999999543   3443332 2599999999999983 55544321    1112222 2344 6779999999886


Q ss_pred             e
Q 027661          217 K  217 (220)
Q Consensus       217 S  217 (220)
                      +
T Consensus       102 ~  102 (197)
T 3eey_A          102 G  102 (197)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.12  E-value=4.8e-06  Score=65.14  Aligned_cols=60  Identities=22%  Similarity=0.144  Sum_probs=43.4

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCCCCCCCcceEEEee
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      |.+|||+|||.+.   ++.+..   +|+|+|+|+++++..+++ ++...|+..    |+++++||+|+|..
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~~~~~-~~~~~d~~~----~~~~~~fD~i~~n~   86 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALESHRGG-NLVRADLLC----SINQESVDVVVFNP   86 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHTCSSS-CEEECSTTT----TBCGGGCSEEEECC
T ss_pred             CCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhcccCC-eEEECChhh----hcccCCCCEEEECC
Confidence            6799999999554   465543   999999999999982222 223344332    67789999999864

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.12  E-value=9.5e-07  Score=74.93  Aligned_cols=43  Identities=16%  Similarity=0.292  Sum_probs=30.8

Q ss_pred             CCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh-hCcCcch
Q 027661          148 PGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK-RNPVLTE  190 (220)
Q Consensus       148 pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~  190 (220)
                      +|.+|||||||.+   .++...++..+|+|+|+++++++ ++.++..
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~   92 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRH   92 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHh
Confidence            4789999999943   33444444569999999999998 3555543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.11  E-value=1.6e-06  Score=70.97  Aligned_cols=67  Identities=19%  Similarity=0.176  Sum_probs=46.2

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCCCCC-CCCCcceEEE
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPKLPF-EDNSFDVITN  214 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~LPF-eDnSFDaVtc  214 (220)
                      +|.+|||||||.+.+   +.. .+..+|+|+|+|+++++. +.++...        ...|+   .++|+ ++++||+|+|
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYER-AGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS---YGRHMDLGKEFDVISS  139 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHH-HTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT---TTSCCCCSSCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCc---cccccCCCCCcCEEEE
Confidence            488999999996654   322 133599999999999983 4444322        22222   24577 6899999999


Q ss_pred             eeee
Q 027661          215 VCKT  218 (220)
Q Consensus       215 svSV  218 (220)
                      ..++
T Consensus       140 ~~~l  143 (298)
T 1ri5_A          140 QFSF  143 (298)
T ss_dssp             ESCG
T ss_pred             Cchh
Confidence            8654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.11  E-value=7.4e-07  Score=78.41  Aligned_cols=69  Identities=9%  Similarity=0.018  Sum_probs=46.3

Q ss_pred             CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcC-cchhhhccCCCC--CCCCCCCCCcceEEEeeee
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPV-LTEYVVQDLNLN--PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~r-L~~~~VqDLN~~--p~LPFeDnSFDaVtcsvSV  218 (220)
                      .+|.+|||+|||++..   +.+.  ..+|+|+|+++++++. +.+ +.. ....+...  ..+||++++||+|+|...+
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~fD~I~~~~vl  181 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREKGIRV-RTDFFEKATADDVRRTEGPANVIYAANTL  181 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTTTCCE-ECSCCSHHHHHHHHHHHCCEEEEEEESCG
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHcCCCc-ceeeechhhHhhcccCCCCEEEEEECChH
Confidence            3588999999997665   3332  2499999999999984 333 111 11111111  2568899999999998654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.10  E-value=1.3e-06  Score=72.20  Aligned_cols=81  Identities=15%  Similarity=0.294  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--------hhhccC
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--------YVVQDL  196 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--------~~VqDL  196 (220)
                      .+..++.+..-+.++.  .+|.+|||||||++..   +.+..+ .+|+|+|+|+++++. +.++.+        +...|+
T Consensus        47 ~a~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~  123 (287)
T 1kpg_A           47 EAQIAKIDLALGKLGL--QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW  123 (287)
T ss_dssp             HHHHHHHHHHHTTTTC--CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG
T ss_pred             HHHHHHHHHHHHHcCC--CCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh
Confidence            3444444444444432  3689999999997754   432222 399999999999983 444322        122333


Q ss_pred             CCCCCCCCCCCCcceEEEeeee
Q 027661          197 NLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       197 N~~p~LPFeDnSFDaVtcsvSV  218 (220)
                         .++|   ++||+|+|...+
T Consensus       124 ---~~~~---~~fD~v~~~~~l  139 (287)
T 1kpg_A          124 ---EQFD---EPVDRIVSIGAF  139 (287)
T ss_dssp             ---GGCC---CCCSEEEEESCG
T ss_pred             ---hhCC---CCeeEEEEeCch
Confidence               2344   899999997543

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.09  E-value=1.3e-06  Score=66.06  Aligned_cols=67  Identities=6%  Similarity=0.013  Sum_probs=44.3

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      ++.+|||+|||.+..   +..  ...+|+|+|.|+++++. +.++...-   ++-.+.+..-|+++++||+|+|..
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~  108 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGG  108 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECS
T ss_pred             CCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECC
Confidence            478999999996544   444  44799999999999983 44443221   111122221167778999999864

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.09  E-value=8.6e-07  Score=71.41  Aligned_cols=67  Identities=15%  Similarity=0.158  Sum_probs=45.2

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcc--hhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLT--EYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~--~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||.+.   ++.+.....+|+|+|+|+++++. +.+..  ++...|..   ++| ++++||+|+|...+
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~---~~~-~~~~fD~v~~~~~l  105 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLA---TWK-PAQKADLLYANAVF  105 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTT---TCC-CSSCEEEEEEESCG
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChh---hcC-ccCCcCEEEEeCch
Confidence            58899999999433   33332234699999999999984 33222  12233433   456 78999999998654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.08  E-value=2.9e-06  Score=66.25  Aligned_cols=62  Identities=15%  Similarity=0.213  Sum_probs=43.8

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh------hhccCCCCCCCCCCCCCcceEEEee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY------VVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~------~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      | +|||+|||.+..   +...  ..+|+|+|+|+++++. +.++...      ...|+   .++|+++++||+|+|++
T Consensus        31 ~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~  102 (202)
T 2kw5_A           31 G-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL---ADFDIVADAWEGIVSIF  102 (202)
T ss_dssp             S-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT---TTBSCCTTTCSEEEEEC
T ss_pred             C-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh---hhcCCCcCCccEEEEEh
Confidence            7 999999995543   4442  3499999999999983 4444321      12222   35688999999999964

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.07  E-value=1.6e-06  Score=71.46  Aligned_cols=106  Identities=10%  Similarity=0.044  Sum_probs=68.2

Q ss_pred             cccCCCCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHH
Q 027661          105 FQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEE  180 (220)
Q Consensus       105 f~R~DesdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~e  180 (220)
                      |..+.++....+...+|....+....++.+.+...  +    .+|.+|||+|||.+..   +...+. .++|+|+|+|++
T Consensus        62 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~  135 (280)
T 1i9g_A           62 FLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGD--I----FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRAD  135 (280)
T ss_dssp             EEEECCCHHHHHTTSCSCSCCCCHHHHHHHHHHTT--C----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred             EEEeCCCHHHHHhhccccceeecHHHHHHHHHHcC--C----CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            34445555556667788888888877766655432  2    2588999999995543   333222 369999999999


Q ss_pred             HHhh-CcCcchh------hhccCCCC-CCCCCCCCCcceEEEee
Q 027661          181 ELKR-NPVLTEY------VVQDLNLN-PKLPFEDNSFDVITNVC  216 (220)
Q Consensus       181 ELaa-N~rL~~~------~VqDLN~~-p~LPFeDnSFDaVtcsv  216 (220)
                      .++. +..+..+      .+.-.+.+ .++|+++++||+|+|..
T Consensus       136 ~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~~~  179 (280)
T 1i9g_A          136 HAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM  179 (280)
T ss_dssp             HHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES
T ss_pred             HHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEECC
Confidence            9883 4444322      01111222 24578899999999854

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.06  E-value=1.6e-06  Score=66.80  Aligned_cols=68  Identities=13%  Similarity=0.127  Sum_probs=44.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||+|||.+..   +.+.  ..+|+|+|+|+++++. +.++...-   ++-.+.+ .++|+ +++||+|+|...+
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~~l  107 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDFILSTVVL  107 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEEEEEESCG
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceEEEEcchh
Confidence            367999999995543   4332  3499999999999984 44433221   1111111 24677 8999999998643

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.06  E-value=2.9e-06  Score=66.24  Aligned_cols=65  Identities=20%  Similarity=0.162  Sum_probs=43.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-Cc-Ccc--hhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NP-VLT--EYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~-rL~--~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||+|||.+..   +.+.  ..+|+|+|+|+++++. +. .+.  ++...|+.   ++ +++++||+|+|...+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~---~~-~~~~~~D~v~~~~~l  117 (218)
T 3ou2_A           46 IRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLF---DW-TPDRQWDAVFFAHWL  117 (218)
T ss_dssp             SCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTT---SC-CCSSCEEEEEEESCG
T ss_pred             CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccc---cC-CCCCceeEEEEechh
Confidence            477999999995443   3332  3599999999999994 33 111  11223332   33 789999999998754

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.05  E-value=4.2e-06  Score=63.59  Aligned_cols=63  Identities=21%  Similarity=0.315  Sum_probs=44.0

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||+|||.+..   +...  ..+|+|+|+|+++++. +.++..  +...|+.   ++|+++++||+|+|.
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~---~~~~~~~~~D~i~~~  114 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLS---VDQISETDFDLIVSA  114 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTT---TSCCCCCCEEEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccc---cCCCCCCceeEEEEC
Confidence            388999999995443   3332  3589999999999983 444432  2223332   467889999999986

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.04  E-value=2.3e-06  Score=67.48  Aligned_cols=65  Identities=12%  Similarity=0.043  Sum_probs=44.7

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch-hhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE-YVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~-~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      +|.+|||||||.+..   +.+.  ..+|+|+|+|+++++. +.++.- +...|+.   .+| .+++||+|+|...+
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~---~~~-~~~~fD~v~~~~~l  112 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFH---QLD-AIDAYDAVWAHACL  112 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGG---GCC-CCSCEEEEEECSCG
T ss_pred             CCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeec---cCC-CCCcEEEEEecCch
Confidence            478999999995554   4432  3599999999999984 443321 1122322   455 79999999997654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.04  E-value=3.2e-06  Score=68.21  Aligned_cols=81  Identities=21%  Similarity=0.259  Sum_probs=49.4

Q ss_pred             HHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCC-CCCC
Q 027661          131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLN-PKLP  203 (220)
Q Consensus       131 i~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~-p~LP  203 (220)
                      ++.+.++.....+   .++.+|||||||.+.+   +.+.  ..+|+|+|+|+++++. +.++...-  +.-++.+ .++|
T Consensus        27 ~~~~~~~~~~~~~---~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~  101 (252)
T 1wzn_A           27 IDFVEEIFKEDAK---REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA  101 (252)
T ss_dssp             HHHHHHHHHHTCS---SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC
T ss_pred             HHHHHHHHHHhcc---cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc
Confidence            4445555555433   2478999999996654   3332  3489999999999983 44433210  1111111 2456


Q ss_pred             CCCCCcceEEEeee
Q 027661          204 FEDNSFDVITNVCK  217 (220)
Q Consensus       204 FeDnSFDaVtcsvS  217 (220)
                      ++ ++||+|+|.++
T Consensus       102 ~~-~~fD~v~~~~~  114 (252)
T 1wzn_A          102 FK-NEFDAVTMFFS  114 (252)
T ss_dssp             CC-SCEEEEEECSS
T ss_pred             cC-CCccEEEEcCC
Confidence            65 68999998654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.03  E-value=5e-06  Score=63.12  Aligned_cols=68  Identities=12%  Similarity=0.086  Sum_probs=44.0

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh-----hccCCCCCCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV-----VQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~-----VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      ++.+|||+|||.+..   +...  ..+|+|+|+|+++++. +.++...-     ++-.+.+..-++++++||+|+|...
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~  128 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPP  128 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECCC
Confidence            588999999995543   4443  4699999999999983 44443221     1111122222455889999998643

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.03  E-value=1.7e-06  Score=69.96  Aligned_cols=69  Identities=19%  Similarity=0.179  Sum_probs=46.2

Q ss_pred             CCCCeEeeeccch---hhccCCCCC-CCcEEEecCCHHHHh-------hCcCcchhhhccCCCCCCCCCCCCCcceEEEe
Q 027661          147 TPGVSILDLCSSW---VSHFPPGYK-QDRIVGMGMNEEELK-------RNPVLTEYVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccSW---vSHLP~~v~-~~~VVGLGmN~eELa-------aN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++|.+||||+||.   ..++.+.++ .++|+|+|+|+++++       .|+++ ++...|......+|+.+++||+|+|.
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v-~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNI-IPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTE-EEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCe-EEEEcccCChhhhcccCCcEEEEEEc
Confidence            3589999999994   455555442 369999999976433       13332 23335554444578889999999986


Q ss_pred             e
Q 027661          216 C  216 (220)
Q Consensus       216 v  216 (220)
                      .
T Consensus       155 ~  155 (233)
T 2ipx_A          155 V  155 (233)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.03  E-value=3.7e-06  Score=70.99  Aligned_cols=69  Identities=17%  Similarity=0.305  Sum_probs=46.4

Q ss_pred             CCCeEeeeccchhhc---cC-CCCCCCcEEEecCCHHHHhh-CcCcchhhhc----cCCCC-CCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FP-PGYKQDRIVGMGMNEEELKR-NPVLTEYVVQ----DLNLN-PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP-~~v~~~~VVGLGmN~eELaa-N~rL~~~~Vq----DLN~~-p~LPFeDnSFDaVtcsvS  217 (220)
                      +|.+|||+|||.+.+   +. ......+|+|+|+|+++++. +.++....+.    -...+ .++|++ ++||+|+|...
T Consensus       118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~  196 (305)
T 3ocj_A          118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGL  196 (305)
T ss_dssp             TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSS
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECCh
Confidence            488999999996554   43 22334799999999999983 5554432111    11112 357888 99999998653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.02  E-value=8.7e-07  Score=73.27  Aligned_cols=66  Identities=12%  Similarity=0.062  Sum_probs=43.1

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh----hhcc---CCCC-CCCC---CCCCCcceE
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY----VVQD---LNLN-PKLP---FEDNSFDVI  212 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~----~VqD---LN~~-p~LP---FeDnSFDaV  212 (220)
                      ++.+|||||||.+.+   +.+.  ..+|+|+|+|+++++. +.++.+.    ...+   .+.+ ..+|   |++++||+|
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V  134 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  134 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence            378999999995544   4432  2399999999999983 3332110    0011   1111 3556   899999999


Q ss_pred             EEe
Q 027661          213 TNV  215 (220)
Q Consensus       213 tcs  215 (220)
                      +|.
T Consensus       135 ~~~  137 (293)
T 3thr_A          135 ICL  137 (293)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            996

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.02  E-value=4.8e-06  Score=66.21  Aligned_cols=73  Identities=25%  Similarity=0.377  Sum_probs=49.4

Q ss_pred             HHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch------hhhccCCCCCCC
Q 027661          133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE------YVVQDLNLNPKL  202 (220)
Q Consensus       133 ~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~------~~VqDLN~~p~L  202 (220)
                      .+.+...+.+++    +.+|||+|||.+.+   +.+.   .+|+|+|+|+++++. +.++..      +...|+   .++
T Consensus        22 ~~~~~~~~~~~~----~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~   91 (243)
T 3d2l_A           22 EWVAWVLEQVEP----GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDM---REL   91 (243)
T ss_dssp             HHHHHHHHHSCT----TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCG---GGC
T ss_pred             HHHHHHHHHcCC----CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcCh---hhc
Confidence            344556667764    78999999995544   5554   699999999999983 443321      122222   245


Q ss_pred             CCCCCCcceEEEee
Q 027661          203 PFEDNSFDVITNVC  216 (220)
Q Consensus       203 PFeDnSFDaVtcsv  216 (220)
                      |++ ++||+|+|..
T Consensus        92 ~~~-~~fD~v~~~~  104 (243)
T 3d2l_A           92 ELP-EPVDAITILC  104 (243)
T ss_dssp             CCS-SCEEEEEECT
T ss_pred             CCC-CCcCEEEEeC
Confidence            665 8999999864

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.00  E-value=1.3e-06  Score=69.89  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=46.0

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCCCCC--CCCCCcceEEE
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNPKLP--FEDNSFDVITN  214 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p~LP--FeDnSFDaVtc  214 (220)
                      ++.+|||||||.+..   +.......+|+|+|+++++++. +.++...       ...|..   .+|  |++++||.|+|
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~---~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGS---DLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSS---CGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHH---HHHhhcCCCCCCEEEE
Confidence            378999999995544   4433334699999999999983 4433221       223332   366  88999999998


Q ss_pred             eee
Q 027661          215 VCK  217 (220)
Q Consensus       215 svS  217 (220)
                      .+.
T Consensus       118 ~~~  120 (214)
T 1yzh_A          118 NFS  120 (214)
T ss_dssp             ESC
T ss_pred             ECC
Confidence            764

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.00  E-value=2.5e-06  Score=72.20  Aligned_cols=65  Identities=15%  Similarity=0.202  Sum_probs=43.8

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcc------------------------hhhhccCCCC
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLT------------------------EYVVQDLNLN  199 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~------------------------~~~VqDLN~~  199 (220)
                      +|.+|||+|||.+..   |.+. + .+|+|+|+|+++++. +.+..                        ++.+.|+   
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~-G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~---  142 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR-G-HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI---  142 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT-T-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT---
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC-C-CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc---
Confidence            478999999995554   4442 2 389999999999983 22221                        1112222   


Q ss_pred             CCCCCCC-CCcceEEEeee
Q 027661          200 PKLPFED-NSFDVITNVCK  217 (220)
Q Consensus       200 p~LPFeD-nSFDaVtcsvS  217 (220)
                      .+||+++ ++||+|++..+
T Consensus       143 ~~l~~~~~~~FD~V~~~~~  161 (252)
T 2gb4_A          143 FDLPRANIGKFDRIWDRGA  161 (252)
T ss_dssp             TTGGGGCCCCEEEEEESSS
T ss_pred             ccCCcccCCCEEEEEEhhh
Confidence            4678875 89999997543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.99  E-value=1.6e-06  Score=81.15  Aligned_cols=65  Identities=18%  Similarity=0.287  Sum_probs=42.1

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCC---CC-CCC--CCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLN---LN-PKL--PFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN---~~-p~L--PFeDnSFDaVtcs  215 (220)
                      +.+|||+|||.+..   |..  ...+|+|+|+++++++. +....+.-.-+++   .+ -+|  ++++++||+|+|.
T Consensus        67 ~~~vLDvGCG~G~~~~~la~--~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLAS--KGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHh--CCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence            67999999996654   443  23699999999999983 3322221100111   11 134  6789999999995

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.99  E-value=3e-06  Score=68.84  Aligned_cols=102  Identities=13%  Similarity=-0.013  Sum_probs=62.4

Q ss_pred             CCCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHHh-
Q 027661          109 DESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELK-  183 (220)
Q Consensus       109 DesdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eELa-  183 (220)
                      .++....+...+|-...+-+..++.+.+..    ..  .+|.+|||+|||.+..   +...+. .++|+|+|+|+++++ 
T Consensus        60 ~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~--~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~  133 (255)
T 3mb5_A           60 RPRIVDYLDKMKRGPQIVHPKDAALIVAYA----GI--SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKL  133 (255)
T ss_dssp             CCCHHHHHHHSCCCSCCCCHHHHHHHHHHT----TC--CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CCCHHHHHhhCccccccccHhHHHHHHHhh----CC--CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHH
Confidence            333333344555555555555555554432    21  3589999999995443   444322 369999999999998 


Q ss_pred             hCcCcchhh----hccCCCCCCCCCCCCCcceEEEee
Q 027661          184 RNPVLTEYV----VQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       184 aN~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      ++.++..+-    +.-.+.+..-++++++||+|++..
T Consensus       134 a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~  170 (255)
T 3mb5_A          134 AWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDL  170 (255)
T ss_dssp             HHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECS
T ss_pred             HHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECC
Confidence            355554432    222333444568899999999854

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.98  E-value=1.6e-06  Score=68.92  Aligned_cols=66  Identities=11%  Similarity=0.141  Sum_probs=44.4

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-----CcCcch-------hhhccCCCCCCCCCCCCCcceE
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-----NPVLTE-------YVVQDLNLNPKLPFEDNSFDVI  212 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-----N~rL~~-------~~VqDLN~~p~LPFeDnSFDaV  212 (220)
                      +|.+|||||||++..   +.+.....+|+|+|+|+++|+.     +.+...       +...|+   .++||++++ |.|
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~---~~l~~~~~~-d~v  102 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATA---ERLPPLSGV-GEL  102 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCS---TTCCSCCCE-EEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecch---hhCCCCCCC-CEE
Confidence            488999999996554   4443334699999999998873     222211       111222   358999998 988


Q ss_pred             EEeee
Q 027661          213 TNVCK  217 (220)
Q Consensus       213 tcsvS  217 (220)
                      .+.++
T Consensus       103 ~~~~~  107 (218)
T 3mq2_A          103 HVLMP  107 (218)
T ss_dssp             EEESC
T ss_pred             EEEcc
Confidence            86654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=97.97  E-value=1.1e-06  Score=68.07  Aligned_cols=81  Identities=6%  Similarity=0.046  Sum_probs=39.4

Q ss_pred             HHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCC---CCCCCC
Q 027661          133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLN---PKLPFE  205 (220)
Q Consensus       133 ~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~---p~LPFe  205 (220)
                      .+.+...+.++.. .++.+|||+|||.+..   +.......+|+|+|+|+++++. +.++...-. ++...   ..-|++
T Consensus        16 ~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~   93 (215)
T 4dzr_A           16 VLVEEAIRFLKRM-PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLI   93 (215)
T ss_dssp             HHHHHHHHHHTTC-CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhc-CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhh
Confidence            3444444444321 2488999999995443   3333333599999999999983 555543211 11111   111666


Q ss_pred             C-----CCcceEEEe
Q 027661          206 D-----NSFDVITNV  215 (220)
Q Consensus       206 D-----nSFDaVtcs  215 (220)
                      +     ++||+|+|.
T Consensus        94 ~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           94 ERAERGRPWHAIVSN  108 (215)
T ss_dssp             HHHHTTCCBSEEEEC
T ss_pred             hhhhccCcccEEEEC
Confidence            6     999999983

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.97  E-value=2.4e-06  Score=72.80  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=46.1

Q ss_pred             CCCCeEeeeccc---hhhccCCCCC-CCcEEEecCCHHHHh----h---CcCcchhhhccCCCCCCCCCCCCCcceEEEe
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYK-QDRIVGMGMNEEELK----R---NPVLTEYVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~-~~~VVGLGmN~eELa----a---N~rL~~~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +||++|||||||   +.+|+.+.++ .++|+|+|+++.++.    .   ++.+ .....|..........+++||+|++.
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv-~~i~~Da~~~~~~~~~~~~~D~I~~d  153 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNI-FPLLADARFPQSYKSVVENVDVLYVD  153 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTE-EEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCe-EEEEcccccchhhhccccceEEEEec
Confidence            579999999999   7888877665 489999999998753    1   1111 11223433221112235799999987


Q ss_pred             ee
Q 027661          216 CK  217 (220)
Q Consensus       216 vS  217 (220)
                      ++
T Consensus       154 ~a  155 (232)
T 3id6_C          154 IA  155 (232)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.97  E-value=2.6e-06  Score=66.62  Aligned_cols=84  Identities=8%  Similarity=-0.013  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh---ccCCCCC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLNP  200 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~p  200 (220)
                      +..++++-+.....++.   +|.+|||||||.+..   +.. .+..+|+|+|+|+++++. +.++...-.   +-++.+.
T Consensus        27 ~~~~~~l~~~l~~~~~~---~~~~vLDlgcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~  102 (189)
T 3p9n_A           27 DRVRESLFNIVTARRDL---TGLAVLDLYAGSGALGLEALS-RGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAV  102 (189)
T ss_dssp             HHHHHHHHHHHHHHSCC---TTCEEEEETCTTCHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCH
T ss_pred             HHHHHHHHHHHHhccCC---CCCEEEEeCCCcCHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccH
Confidence            45566666666655432   488999999995543   222 234689999999999983 544433211   1111221


Q ss_pred             -CC--CCCCCCcceEEEe
Q 027661          201 -KL--PFEDNSFDVITNV  215 (220)
Q Consensus       201 -~L--PFeDnSFDaVtcs  215 (220)
                       ++  .+++++||+|+|.
T Consensus       103 ~~~~~~~~~~~fD~i~~~  120 (189)
T 3p9n_A          103 AAVVAAGTTSPVDLVLAD  120 (189)
T ss_dssp             HHHHHHCCSSCCSEEEEC
T ss_pred             HHHHhhccCCCccEEEEC
Confidence             12  2568999999985

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.97  E-value=1.9e-06  Score=67.88  Aligned_cols=69  Identities=9%  Similarity=0.004  Sum_probs=45.7

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc---CCCC-CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD---LNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      +|.+|||+|||.+..   +.+.  ..+|+|+|.|+++++. +.++...-..+   ...+ .+.+.++++||+|+|..+.
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~  153 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAP  153 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccch
Confidence            589999999995443   4332  3699999999999983 55554322111   1111 1345568999999997654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=97.96  E-value=2.5e-06  Score=66.55  Aligned_cols=69  Identities=12%  Similarity=0.017  Sum_probs=43.5

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCc-chhhhccCCCCCCCCCCCC-CcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVL-TEYVVQDLNLNPKLPFEDN-SFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL-~~~~VqDLN~~p~LPFeDn-SFDaVtcsvSV  218 (220)
                      ++.+|||||||.+..   +.+.  ..+|+|+|+++++++. +.+- ..+...++......|+.++ +||+|+|...+
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l  126 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFAL  126 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchh
Confidence            368999999995544   4443  3589999999999983 3321 1122222222223465555 49999998654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.95  E-value=1.6e-06  Score=69.97  Aligned_cols=87  Identities=21%  Similarity=0.220  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCC------CCcEEEecCCHHHHhh-CcCcchhh-----
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYK------QDRIVGMGMNEEELKR-NPVLTEYV-----  192 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~------~~~VVGLGmN~eELaa-N~rL~~~~-----  192 (220)
                      +...+.+.++....+.    +|.+|||+|||.+..   +.+..+      .++|+|+|.++++++. +.++.+..     
T Consensus        68 p~~~~~~~~~l~~~~~----~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~  143 (227)
T 1r18_A           68 PHMHAFALEYLRDHLK----PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD  143 (227)
T ss_dssp             HHHHHHHHHHTTTTCC----TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhCC----CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccC
Confidence            3334444444433343    588999999995433   333222      2599999999999984 55554321     


Q ss_pred             ---hccCCCCCCCCCCC-CCcceEEEeeee
Q 027661          193 ---VQDLNLNPKLPFED-NSFDVITNVCKT  218 (220)
Q Consensus       193 ---VqDLN~~p~LPFeD-nSFDaVtcsvSV  218 (220)
                         +.-...+...++++ ++||+|++..++
T Consensus       144 ~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  173 (227)
T 1r18_A          144 SGQLLIVEGDGRKGYPPNAPYNAIHVGAAA  173 (227)
T ss_dssp             HTSEEEEESCGGGCCGGGCSEEEEEECSCB
T ss_pred             CCceEEEECCcccCCCcCCCccEEEECCch
Confidence               11122223335655 899999998764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=97.94  E-value=8.9e-06  Score=65.32  Aligned_cols=64  Identities=17%  Similarity=0.137  Sum_probs=43.0

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCCCCCCCCCcceEEEee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +.+|||+|||.+..   +..  ...+|+|+|+|+++++. +.++.+.        ...|+.   ++| ++++||+|+|..
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~-~~~~fD~v~~~~  140 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVF---TWR-PTELFDLIFDYV  140 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTT---TCC-CSSCEEEEEEES
T ss_pred             CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchh---cCC-CCCCeeEEEECh
Confidence            45999999995544   443  23689999999999983 5544431        223332   344 566999999876


Q ss_pred             ee
Q 027661          217 KT  218 (220)
Q Consensus       217 SV  218 (220)
                      .+
T Consensus       141 ~l  142 (235)
T 3lcc_A          141 FF  142 (235)
T ss_dssp             ST
T ss_pred             hh
Confidence            43

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.94  E-value=2.1e-06  Score=73.78  Aligned_cols=71  Identities=11%  Similarity=-0.002  Sum_probs=45.7

Q ss_pred             CCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHHhh-CcCcchhh---hccCCCC-CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      +|.+|||+||||+..   +.+... .++|+|+|+|+++++. +.++.+.-   +.-...+ .+++.++++||+|+|...+
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~~  154 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGV  154 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCCH
Confidence            589999999997764   333222 2579999999999983 54443221   1111112 1334467899999998654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.93  E-value=6.3e-06  Score=70.75  Aligned_cols=77  Identities=18%  Similarity=0.192  Sum_probs=45.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh---CcCcch-h--hhccC--CCC-
Q 027661          132 AALTKYYSEVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR---NPVLTE-Y--VVQDL--NLN-  199 (220)
Q Consensus       132 ~~LT~lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa---N~rL~~-~--~VqDL--N~~-  199 (220)
                      ..|.++-.+.+.   +||.+|||||||   |..++.+.   ++|+|+|+++ |+..   ++...+ +  -+.-+  ..+ 
T Consensus        61 ~KL~~i~~~~~~---~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~  133 (265)
T 2oxt_A           61 AKLAWMEERGYV---ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDI  133 (265)
T ss_dssp             HHHHHHHHHTSC---CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCT
T ss_pred             HHHHHHHHcCCC---CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCH
Confidence            344554444333   258999999999   55556554   7999999998 5331   222110 0  11111  112 


Q ss_pred             CCCCCCCCCcceEEEeee
Q 027661          200 PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       200 p~LPFeDnSFDaVtcsvS  217 (220)
                      ..||  +++||+|+|.++
T Consensus       134 ~~l~--~~~fD~V~sd~~  149 (265)
T 2oxt_A          134 HTLP--VERTDVIMCDVG  149 (265)
T ss_dssp             TTSC--CCCCSEEEECCC
T ss_pred             hHCC--CCCCcEEEEeCc
Confidence            2344  889999999754

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.93  E-value=5.6e-06  Score=66.90  Aligned_cols=69  Identities=9%  Similarity=0.034  Sum_probs=42.8

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhc-c---CCCC-CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQ-D---LNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~Vq-D---LN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      +|.+|||||||.+..   +...  ..+|+|+|+|+++++. +.++...-+. +   +..+ .+......+||+|++..+.
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~  132 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG  132 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence            488999999995543   4443  5699999999999983 4444322111 1   1111 1212233579999987543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=97.93  E-value=1.4e-06  Score=70.71  Aligned_cols=70  Identities=10%  Similarity=0.094  Sum_probs=45.4

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCC-CCCC--CCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLN-PKLP--FEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~-p~LP--FeDnSFDaVtcsvS  217 (220)
                      ++.+|||||||.+.+   +.......+|+|+|+++++++. +.++.+.-   ++-+..+ ..+|  |++++||.|++.++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            377999999996554   4333334699999999999983 44332211   1111111 1355  88999999988764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.92  E-value=1.6e-06  Score=71.53  Aligned_cols=70  Identities=10%  Similarity=0.118  Sum_probs=45.7

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh---ccCCCCC-C-CC--CCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLNP-K-LP--FEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~p-~-LP--FeDnSFDaVtcsv  216 (220)
                      ++..|||||||.+.+   +.......+|+|+|+++++++. ..++.+.-.   .-+..+. + ||  |++++||.|++.+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            367999999997665   4433334589999999999983 443332211   1122221 2 34  8899999999875


Q ss_pred             e
Q 027661          217 K  217 (220)
Q Consensus       217 S  217 (220)
                      .
T Consensus       114 ~  114 (218)
T 3dxy_A          114 P  114 (218)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.92  E-value=4.8e-06  Score=70.18  Aligned_cols=65  Identities=18%  Similarity=0.448  Sum_probs=43.1

Q ss_pred             CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCCCCCCCCCcceEEE
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtc  214 (220)
                      .+|.+|||+|||++..   +.+.. ..+|+|+|+|+++++. +.++.+.        ...|+   .++|   ++||+|+|
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~---~~fD~v~~  161 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---EDFA---EPVDRIVS  161 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---GGCC---CCCSEEEE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---HHCC---CCcCEEEE
Confidence            3689999999997654   33322 2499999999999983 4443321        22222   2333   89999999


Q ss_pred             eeee
Q 027661          215 VCKT  218 (220)
Q Consensus       215 svSV  218 (220)
                      ...+
T Consensus       162 ~~~l  165 (318)
T 2fk8_A          162 IEAF  165 (318)
T ss_dssp             ESCG
T ss_pred             eChH
Confidence            8543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.91  E-value=3.3e-06  Score=69.66  Aligned_cols=77  Identities=14%  Similarity=0.070  Sum_probs=48.5

Q ss_pred             HHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCC---CCCCC
Q 027661          134 LTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLN---PKLPF  204 (220)
Q Consensus       134 LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~---p~LPF  204 (220)
                      +.+.-++.+++   +|.+|||||||++.   ++.+. .+.+|+|+|+|+++++. +.+..+..  +.-+..+   ...++
T Consensus        49 ~m~~~a~~~~~---~G~rVLdiG~G~G~~~~~~~~~-~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~  124 (236)
T 3orh_A           49 YMHALAAAASS---KGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL  124 (236)
T ss_dssp             HHHHHHHHHTT---TCEEEEEECCTTSHHHHHHTTS-CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS
T ss_pred             HHHHHHHhhcc---CCCeEEEECCCccHHHHHHHHh-CCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc
Confidence            33344455553   58999999999664   45442 34689999999999984 44433321  1111111   23478


Q ss_pred             CCCCcceEEE
Q 027661          205 EDNSFDVITN  214 (220)
Q Consensus       205 eDnSFDaVtc  214 (220)
                      ++++||.|++
T Consensus       125 ~~~~FD~i~~  134 (236)
T 3orh_A          125 PDGHFDGILY  134 (236)
T ss_dssp             CTTCEEEEEE
T ss_pred             cccCCceEEE
Confidence            8999999875

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=97.91  E-value=2.2e-06  Score=71.95  Aligned_cols=71  Identities=11%  Similarity=0.110  Sum_probs=43.6

Q ss_pred             CCCCeEeeeccchhh-------ccCCCCCCCcE--EEecCCHHHHhh-CcCcchh-hh-------ccCCCCCCC------
Q 027661          147 TPGVSILDLCSSWVS-------HFPPGYKQDRI--VGMGMNEEELKR-NPVLTEY-VV-------QDLNLNPKL------  202 (220)
Q Consensus       147 ~pG~~VLDLccSWvS-------HLP~~v~~~~V--VGLGmN~eELaa-N~rL~~~-~V-------qDLN~~p~L------  202 (220)
                      .++.+|||||||.+.       ++.......+|  +|+|.|++||+. +.++.+. ..       .+.+.. .+      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~  129 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSS-EYQSRMLE  129 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHH-HHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchh-hhhhhhcc
Confidence            357899999999762       22211112344  999999999983 4433221 00       111111 23      


Q ss_pred             CCCCCCcceEEEeeee
Q 027661          203 PFEDNSFDVITNVCKT  218 (220)
Q Consensus       203 PFeDnSFDaVtcsvSV  218 (220)
                      ||+|++||+|+|..++
T Consensus       130 ~~~~~~fD~V~~~~~l  145 (292)
T 2aot_A          130 KKELQKWDFIHMIQML  145 (292)
T ss_dssp             TTCCCCEEEEEEESCG
T ss_pred             ccCCCceeEEEEeeee
Confidence            4889999999998764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.90  E-value=2.6e-06  Score=68.73  Aligned_cols=104  Identities=10%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             cCCCCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHH
Q 027661          107 RFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEEL  182 (220)
Q Consensus       107 R~DesdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eEL  182 (220)
                      .++++....+...+|....+-...++.+.+...  +    .+|.+|||+|||.+..   +...++ .++|+|+|+|++++
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~  134 (258)
T 2pwy_A           61 VHRPTLEEYLLHMKRSATPTYPKDASAMVTLLD--L----APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHL  134 (258)
T ss_dssp             EECCCHHHHHHHSCCSSCCCCHHHHHHHHHHTT--C----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHH
T ss_pred             EeCCCHHHHhhcCccccccccchHHHHHHHHcC--C----CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence            344444444555667666666666655554432  2    2588999999995543   433323 36999999999999


Q ss_pred             hh-CcCcchh-h---hccCCCC-CCCCCCCCCcceEEEee
Q 027661          183 KR-NPVLTEY-V---VQDLNLN-PKLPFEDNSFDVITNVC  216 (220)
Q Consensus       183 aa-N~rL~~~-~---VqDLN~~-p~LPFeDnSFDaVtcsv  216 (220)
                      +. +..+..+ -   +.-.+.+ .++|+++++||+|+|..
T Consensus       135 ~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~~  174 (258)
T 2pwy_A          135 AQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALDL  174 (258)
T ss_dssp             HHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEES
T ss_pred             HHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEECC
Confidence            83 4443222 0   1111111 24578889999999853

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.90  E-value=8.9e-07  Score=77.65  Aligned_cols=67  Identities=12%  Similarity=0.113  Sum_probs=42.7

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh----hccCCCC-CCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLN-PKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~-p~LPFeDnSFDaVtcsv  216 (220)
                      +|.+|||||||.+..   +.+. +..+|+|+|+|+ +++. +.++...-    +.-++.+ .++|+++++||+|+|..
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~  139 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW  139 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred             CCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcC
Confidence            588999999995443   3332 345999999995 7663 43332211    1111122 35788899999999854

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.90  E-value=1.5e-05  Score=62.89  Aligned_cols=59  Identities=17%  Similarity=0.261  Sum_probs=40.8

Q ss_pred             CCCeEeeeccchhhccCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSHLP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||.+..... + ..+|+|+|++++    |.   ++...|+.   ++|+++++||+|+|...+
T Consensus        67 ~~~~vLDiG~G~G~~~~~-l-~~~v~~~D~s~~----~~---~~~~~d~~---~~~~~~~~fD~v~~~~~l  125 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASS-I-RNPVHCFDLASL----DP---RVTVCDMA---QVPLEDESVDVAVFCLSL  125 (215)
T ss_dssp             TTSCEEEETCTTCHHHHH-C-CSCEEEEESSCS----ST---TEEESCTT---SCSCCTTCEEEEEEESCC
T ss_pred             CCCeEEEECCcCCHHHHH-h-hccEEEEeCCCC----Cc---eEEEeccc---cCCCCCCCEeEEEEehhc
Confidence            378999999995544211 1 158999999988    21   12233433   378999999999998654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.89  E-value=7.3e-06  Score=70.96  Aligned_cols=69  Identities=16%  Similarity=0.128  Sum_probs=45.2

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh-ccCCC-CCCCC-CCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV-QDLNL-NPKLP-FEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V-qDLN~-~p~LP-FeDnSFDaVtcsvSV  218 (220)
                      +|.+|||||||++..   |.+.  ..+|+|+|+|++||+. +.++....+ .++.. ...++ ..+++||+|+|...+
T Consensus        45 ~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l  120 (261)
T 3iv6_A           45 PGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDFVLNDRLI  120 (261)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSEEEEESCG
T ss_pred             CcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccEEEEhhhh
Confidence            589999999997654   4442  3599999999999993 555544322 22211 11111 236899999998654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.88  E-value=2.3e-06  Score=65.50  Aligned_cols=68  Identities=21%  Similarity=0.047  Sum_probs=43.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh--------hhccCCC-CCCCCCCCCCcceEEE
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY--------VVQDLNL-NPKLPFEDNSFDVITN  214 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~--------~VqDLN~-~p~LPFeDnSFDaVtc  214 (220)
                      +|.+|||+|||.+..   +.. .+..+|+|+|+|+++++ ++.++...        ...|... .+.+|+++++||+|+|
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            378999999995554   222 12369999999999998 34444322        1122211 1245667899999998


Q ss_pred             ee
Q 027661          215 VC  216 (220)
Q Consensus       215 sv  216 (220)
                      ..
T Consensus       123 ~~  124 (187)
T 2fhp_A          123 DP  124 (187)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.88  E-value=3.4e-06  Score=68.00  Aligned_cols=81  Identities=11%  Similarity=0.059  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh----ccCCCC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV----QDLNLN  199 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V----qDLN~~  199 (220)
                      +...+.+.+......+     |.+|||+|||.+..   +...  ..+|+|+|+|+++++. +.++...-+    .-.+.+
T Consensus        63 ~~~~~~l~~~~~~~~~-----~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d  135 (241)
T 3gdh_A           63 EKIAEHIAGRVSQSFK-----CDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGD  135 (241)
T ss_dssp             HHHHHHHHHHHHHHSC-----CSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred             HHHHHHHHHHhhhccC-----CCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECC
Confidence            3345555555555543     78999999995544   4432  2799999999999983 544433211    111111


Q ss_pred             -CCCCCCCCCcceEEEee
Q 027661          200 -PKLPFEDNSFDVITNVC  216 (220)
Q Consensus       200 -p~LPFeDnSFDaVtcsv  216 (220)
                       .+++ ++++||+|+|..
T Consensus       136 ~~~~~-~~~~~D~v~~~~  152 (241)
T 3gdh_A          136 FLLLA-SFLKADVVFLSP  152 (241)
T ss_dssp             HHHHG-GGCCCSEEEECC
T ss_pred             hHHhc-ccCCCCEEEECC
Confidence             1233 678999999864

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.87  E-value=7.6e-06  Score=62.01  Aligned_cols=68  Identities=9%  Similarity=0.007  Sum_probs=42.1

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh----ccCCCCCCCCCCC-CCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV----QDLNLNPKLPFED-NSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V----qDLN~~p~LPFeD-nSFDaVtcsvS  217 (220)
                      +|.+|||+|||.+..   +....  .+|+|+|.|+++++. +.++...-.    .-.+.+..-++++ ++||+|+|...
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  109 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGS  109 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCc
Confidence            488999999995543   44433  699999999999983 443332211    1111121113333 58999998653

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.87  E-value=3.4e-06  Score=67.39  Aligned_cols=65  Identities=14%  Similarity=0.122  Sum_probs=43.3

Q ss_pred             CCCeEeeeccc-hhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccS-WvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||+||| .+..   +.... ..+|+|+|+|+++++. +.++...      ...|.+  .-.++++++||+|+|.
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~--~~~~~~~~~fD~I~~n  130 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG--IIKGVVEGTFDVIFSA  130 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC--SSTTTCCSCEEEEEEC
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch--hhhhcccCceeEEEEC
Confidence            48899999999 5543   33321 4699999999999983 4443322      223322  1235668999999985

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.85  E-value=5.4e-06  Score=66.23  Aligned_cols=88  Identities=15%  Similarity=0.084  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCC-----CCcEEEecCCHHHHhh-CcCcchhh-----
Q 027661          127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYK-----QDRIVGMGMNEEELKR-NPVLTEYV-----  192 (220)
Q Consensus       127 Dd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~-----~~~VVGLGmN~eELaa-N~rL~~~~-----  192 (220)
                      .....+.+.++....+.    +|.+|||+|||.+.   ++.+..+     .++|+|+|.++++++. +.++.+..     
T Consensus        63 ~p~~~~~~~~~l~~~~~----~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~  138 (227)
T 2pbf_A           63 APHMHALSLKRLINVLK----PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLK  138 (227)
T ss_dssp             CHHHHHHHHHHHTTTSC----TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGS
T ss_pred             ChHHHHHHHHHHHhhCC----CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccc
Confidence            33444444444433343    48899999999443   3333222     2599999999999983 54443321     


Q ss_pred             ---hccCCCC-CCCC----CCCCCcceEEEeeee
Q 027661          193 ---VQDLNLN-PKLP----FEDNSFDVITNVCKT  218 (220)
Q Consensus       193 ---VqDLN~~-p~LP----FeDnSFDaVtcsvSV  218 (220)
                         +.-...+ .+.+    +++++||+|++..+.
T Consensus       139 ~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~  172 (227)
T 2pbf_A          139 IDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASA  172 (227)
T ss_dssp             STTEEEEECCGGGCCHHHHHHHCCEEEEEECSBB
T ss_pred             cCCEEEEECChHhcccccCccCCCcCEEEECCch
Confidence               1111111 1233    567899999987654

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.84  E-value=1.1e-05  Score=71.45  Aligned_cols=102  Identities=18%  Similarity=0.100  Sum_probs=62.8

Q ss_pred             cCCCCCc-ccCcCCCCccC---CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCH
Q 027661          107 RFDESPD-SLFYETPRFVT---HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNE  179 (220)
Q Consensus       107 R~DesdD-~~FY~~PRfVt---HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~  179 (220)
                      -+|.+.+ ..+...-|+.+   -+.+...+.|-++-   .+    +|.+|||+|||.+..   +......++|+|+|+|+
T Consensus       179 ~ld~~g~~~l~~rgyr~~~~~a~l~~~la~~l~~~~---~~----~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~  251 (373)
T 3tm4_A          179 GIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELA---EL----DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYR  251 (373)
T ss_dssp             EEESSCSSCTTCCTTCCSCCTTCCCHHHHHHHHHHH---TC----CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCH
T ss_pred             EEEccCCcccccCCcccccCCCCccHHHHHHHHHhh---cC----CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCH
Confidence            4455555 44443334433   34666666665544   33    488999999996654   33222235899999999


Q ss_pred             HHHh-hCcCcchhhh----ccCCCC-CCCCCCCCCcceEEEe
Q 027661          180 EELK-RNPVLTEYVV----QDLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       180 eELa-aN~rL~~~~V----qDLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      ++++ ++.++...-+    +-.+.+ .++|+++++||+|+|.
T Consensus       252 ~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          252 KHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN  293 (373)
T ss_dssp             HHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence            9998 3544433221    111222 3578889999999994

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=97.83  E-value=7.1e-06  Score=68.62  Aligned_cols=69  Identities=17%  Similarity=0.224  Sum_probs=44.2

Q ss_pred             CCCCeEeeeccchhh---ccCCCC-CCCcEEEecCCHHHHhh-CcCcchh----hhccCCCCCCCCCCCCCcceEEEe
Q 027661          147 TPGVSILDLCSSWVS---HFPPGY-KQDRIVGMGMNEEELKR-NPVLTEY----VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccSWvS---HLP~~v-~~~~VVGLGmN~eELaa-N~rL~~~----~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++|.+|||+|||.+.   ++.+.+ ...+|+|+|+++++++. +.++...    .++-...+..-++++++||+|+|.
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~~  186 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD  186 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEEc
Confidence            358999999999654   343332 23699999999999883 3333221    111122222237788999999984

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.82  E-value=2.4e-05  Score=70.78  Aligned_cols=98  Identities=15%  Similarity=0.204  Sum_probs=61.0

Q ss_pred             cccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCc
Q 027661          113 DSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVL  188 (220)
Q Consensus       113 D~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL  188 (220)
                      +..|+-.|.--........+.|.+...+.+..  .++.+|||||||.+..   |...  ..+|+|+|.|+++++. +.++
T Consensus       253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~--~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~  328 (433)
T 1uwv_A          253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDV--QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNA  328 (433)
T ss_dssp             TEEEECCSSSCCCSBHHHHHHHHHHHHHHHTC--CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEECcccccccCHHHHHHHHHHHHHhhcC--CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHH
Confidence            33444444433344444455555555555543  2478999999995543   5543  4699999999999982 3222


Q ss_pred             c-------hhhhccCCCC-CCCCCCCCCcceEEE
Q 027661          189 T-------EYVVQDLNLN-PKLPFEDNSFDVITN  214 (220)
Q Consensus       189 ~-------~~~VqDLN~~-p~LPFeDnSFDaVtc  214 (220)
                      .       ++...|.... ..+|+++++||+|++
T Consensus       329 ~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~  362 (433)
T 1uwv_A          329 RLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  362 (433)
T ss_dssp             HHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             HHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEE
Confidence            1       2333555443 457899999999987

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.82  E-value=4.8e-06  Score=66.52  Aligned_cols=85  Identities=16%  Similarity=0.098  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCC-CcEEEecCCHHHHhh-CcCcchh----------
Q 027661          127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEY----------  191 (220)
Q Consensus       127 Dd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~----------  191 (220)
                      ++...+.+.++....+.    +|.+|||+|||.+   .++.+.+++ ++|+|+|+++++++. +.++...          
T Consensus        60 ~p~~~~~~l~~l~~~~~----~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v  135 (226)
T 1i1n_A           60 APHMHAYALELLFDQLH----EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV  135 (226)
T ss_dssp             CHHHHHHHHHHTTTTSC----TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE
T ss_pred             CHHHHHHHHHHHHhhCC----CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcE
Confidence            44445555444433343    5889999999943   334433322 599999999999983 4443321          


Q ss_pred             --hhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          192 --VVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       192 --~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                        ...|..   ..++++++||+|+|....
T Consensus       136 ~~~~~d~~---~~~~~~~~fD~i~~~~~~  161 (226)
T 1i1n_A          136 QLVVGDGR---MGYAEEAPYDAIHVGAAA  161 (226)
T ss_dssp             EEEESCGG---GCCGGGCCEEEEEECSBB
T ss_pred             EEEECCcc---cCcccCCCcCEEEECCch
Confidence              112222   345567899999987654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.82  E-value=3.5e-05  Score=61.53  Aligned_cols=68  Identities=15%  Similarity=0.097  Sum_probs=46.0

Q ss_pred             HHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCCCCCCCCCCcceE
Q 027661          137 YYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPKLPFEDNSFDVI  212 (220)
Q Consensus       137 lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p~LPFeDnSFDaV  212 (220)
                      +..+.+|     +.+|||+|||.+..   +...      +|+|+|+++++. +.+--++...|+   ..+|+++++||+|
T Consensus        41 ~l~~~~~-----~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~~~~~~~~d~---~~~~~~~~~fD~v  106 (219)
T 1vlm_A           41 AVKCLLP-----EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKRGVFVLKGTA---ENLPLKDESFDFA  106 (219)
T ss_dssp             HHHHHCC-----SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHTTCEEEECBT---TBCCSCTTCEEEE
T ss_pred             HHHHhCC-----CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhcCCEEEEccc---ccCCCCCCCeeEE
Confidence            4455554     67999999996554   4331      999999999984 332112222333   3478999999999


Q ss_pred             EEeeee
Q 027661          213 TNVCKT  218 (220)
Q Consensus       213 tcsvSV  218 (220)
                      +|...+
T Consensus       107 ~~~~~l  112 (219)
T 1vlm_A          107 LMVTTI  112 (219)
T ss_dssp             EEESCG
T ss_pred             EEcchH
Confidence            998654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.81  E-value=1.1e-05  Score=69.87  Aligned_cols=76  Identities=12%  Similarity=0.062  Sum_probs=44.8

Q ss_pred             HHHHHHHhhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh---CcCcch---hhhccC--CCC-C
Q 027661          133 ALTKYYSEVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR---NPVLTE---YVVQDL--NLN-P  200 (220)
Q Consensus       133 ~LT~lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa---N~rL~~---~~VqDL--N~~-p  200 (220)
                      .|.++-...+.   ++|.+|||||||   |...+.+.   ++|+|+|+++ |+..   ++...+   .-+.-+  ..+ .
T Consensus        70 KL~~i~~~~~~---~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~  142 (276)
T 2wa2_A           70 KLAWIDERGGV---ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVT  142 (276)
T ss_dssp             HHHHHHHTTSC---CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGG
T ss_pred             HHHHHHHcCCC---CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHh
Confidence            34444444332   358999999999   55556554   6999999998 5331   221100   011111  112 2


Q ss_pred             CCCCCCCCcceEEEeee
Q 027661          201 KLPFEDNSFDVITNVCK  217 (220)
Q Consensus       201 ~LPFeDnSFDaVtcsvS  217 (220)
                      .||  +++||+|+|.++
T Consensus       143 ~l~--~~~fD~Vvsd~~  157 (276)
T 2wa2_A          143 KME--PFQADTVLCDIG  157 (276)
T ss_dssp             GCC--CCCCSEEEECCC
T ss_pred             hCC--CCCcCEEEECCC
Confidence            344  889999999764

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.81  E-value=7.3e-06  Score=65.79  Aligned_cols=83  Identities=12%  Similarity=0.017  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhh---hccCCCCC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYV---VQDLNLNP  200 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~---VqDLN~~p  200 (220)
                      +..++.+.+.....++     |.+|||||||.+..   +... ...+|+|+|+|+++++ ++.++...-   +.-++.+.
T Consensus        39 ~~~~~~l~~~l~~~~~-----~~~vLDlgcG~G~~~~~l~~~-~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~  112 (202)
T 2fpo_A           39 DRVRETLFNWLAPVIV-----DAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA  112 (202)
T ss_dssp             HHHHHHHHHHHHHHHT-----TCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             HHHHHHHHHHHHhhcC-----CCeEEEeCCCcCHHHHHHHhc-CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence            3444455444444333     78999999995544   2221 2359999999999998 344443321   11222221


Q ss_pred             --CCCCCCCCcceEEEee
Q 027661          201 --KLPFEDNSFDVITNVC  216 (220)
Q Consensus       201 --~LPFeDnSFDaVtcsv  216 (220)
                        .+|+.+++||+|+|..
T Consensus       113 ~~~~~~~~~~fD~V~~~~  130 (202)
T 2fpo_A          113 MSFLAQKGTPHNIVFVDP  130 (202)
T ss_dssp             HHHHSSCCCCEEEEEECC
T ss_pred             HHHHhhcCCCCCEEEECC
Confidence              2577888999999853

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=97.81  E-value=1e-05  Score=67.52  Aligned_cols=70  Identities=13%  Similarity=0.188  Sum_probs=45.8

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcch-----------hhhccCCCCCCCC--CCCCCcc
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTE-----------YVVQDLNLNPKLP--FEDNSFD  210 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~-----------~~VqDLN~~p~LP--FeDnSFD  210 (220)
                      ++.+|||||||.+.+   |........|+|+|+++++++ ++.++..           -.+..-+..-.||  |++++||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            467999999996655   444444468999999999997 3433221           0001111111377  8999999


Q ss_pred             eEEEeee
Q 027661          211 VITNVCK  217 (220)
Q Consensus       211 aVtcsvS  217 (220)
                      .|++.+.
T Consensus       126 ~v~~~~~  132 (235)
T 3ckk_A          126 KMFFLFP  132 (235)
T ss_dssp             EEEEESC
T ss_pred             EEEEeCC
Confidence            9988753

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.80  E-value=4.2e-06  Score=78.35  Aligned_cols=94  Identities=19%  Similarity=0.289  Sum_probs=54.2

Q ss_pred             CcccCcCCCCcc-CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccc------h---hhccCCC-CCCCcEEEecCCHH
Q 027661          112 PDSLFYETPRFV-THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS------W---VSHFPPG-YKQDRIVGMGMNEE  180 (220)
Q Consensus       112 dD~~FY~~PRfV-tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccS------W---vSHLP~~-v~~~~VVGLGmN~e  180 (220)
                      ..+.+|...+.. .|.=.       ++|.+.+.+-..++.+|||||||      .   ...+-.. ...++|+|+|+|++
T Consensus       186 ~lA~~Y~tDK~~~~h~y~-------~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~  258 (419)
T 3sso_A          186 ELSSRYFTPKFGFLHWFT-------PHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDK  258 (419)
T ss_dssp             HHHHHTTCTTBSSSCBCH-------HHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCC
T ss_pred             HHHHHhCCCcccccchHH-------HHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHH
Confidence            355556655554 45433       33444332211236899999998      1   1111111 12369999999999


Q ss_pred             HHhhCcCcchhhhccCCCCCCCCCC------CCCcceEEEee
Q 027661          181 ELKRNPVLTEYVVQDLNLNPKLPFE------DNSFDVITNVC  216 (220)
Q Consensus       181 ELaaN~rL~~~~VqDLN~~p~LPFe------DnSFDaVtcsv  216 (220)
                      |....+++ ++.+.|..   ++||.      +++||+|+|..
T Consensus       259 m~~~~~rI-~fv~GDa~---dlpf~~~l~~~d~sFDlVisdg  296 (419)
T 3sso_A          259 SHVDELRI-RTIQGDQN---DAEFLDRIARRYGPFDIVIDDG  296 (419)
T ss_dssp             GGGCBTTE-EEEECCTT---CHHHHHHHHHHHCCEEEEEECS
T ss_pred             HhhcCCCc-EEEEeccc---ccchhhhhhcccCCccEEEECC
Confidence            85444443 23334433   46776      89999999854

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.80  E-value=4.2e-06  Score=62.92  Aligned_cols=82  Identities=15%  Similarity=0.064  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCC--
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLN--  199 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~--  199 (220)
                      +..++.+-+.....+++    |.+|||+|||.+..   +... . .+|+|+|+|+++++. +.++...-  ++-.+.+  
T Consensus        25 ~~~~~~~~~~~~~~~~~----~~~vLD~GcG~G~~~~~l~~~-~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~   98 (171)
T 1ws6_A           25 VRLRKALFDYLRLRYPR----RGRFLDPFAGSGAVGLEAASE-G-WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVE   98 (171)
T ss_dssp             HHHHHHHHHHHHHHCTT----CCEEEEETCSSCHHHHHHHHT-T-CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHH
T ss_pred             HHHHHHHHHHHHhhccC----CCeEEEeCCCcCHHHHHHHHC-C-CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHH
Confidence            45556666666655643    78999999996554   3332 2 249999999999983 44443221  1111111  


Q ss_pred             ---CCCCCCCCCcceEEEe
Q 027661          200 ---PKLPFEDNSFDVITNV  215 (220)
Q Consensus       200 ---p~LPFeDnSFDaVtcs  215 (220)
                         +.++-++++||+|+|.
T Consensus        99 ~~~~~~~~~~~~~D~i~~~  117 (171)
T 1ws6_A           99 VFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             HHHHHHHHTTCCEEEEEEC
T ss_pred             HHHHhhhccCCceEEEEEC
Confidence               1122234589999986

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.80  E-value=2.3e-06  Score=69.96  Aligned_cols=69  Identities=7%  Similarity=0.004  Sum_probs=42.8

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhc---cCCCC-CCCCCC---CCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLN-PKLPFE---DNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~-p~LPFe---DnSFDaVtcsv  216 (220)
                      ++.+|||||||.+..   +.......+|+|+|.|+++++. +......-..   -++.+ .++|++   +++||+|+|..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            378999999996542   3321123599999999999883 4433322111   11111 245554   78999999854

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.78  E-value=4.7e-06  Score=72.31  Aligned_cols=69  Identities=17%  Similarity=0.181  Sum_probs=45.9

Q ss_pred             CCCCeEeeeccc---hhhccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhh---ccCCCC-CCCCCCCCCcceEEEe
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      ++|.+|||+|||   ...|+.+.+. .++|+|+|+|+++++. +.++...-+   +-++.+ .+++..+++||+|+|-
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence            358999999999   4455655443 3799999999999983 555543322   122222 2344457899999984

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.78  E-value=3.9e-05  Score=78.03  Aligned_cols=84  Identities=12%  Similarity=0.068  Sum_probs=55.3

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHHh-hCcCcchh---------
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELK-RNPVLTEY---------  191 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eELa-aN~rL~~~---------  191 (220)
                      +-..-++.+.++....      +|.+|||||||.+..   |.+..+ ..+|+|+|+++++++ ++.++...         
T Consensus       705 L~eqRle~LLelL~~~------~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~  778 (950)
T 3htx_A          705 LSKQRVEYALKHIRES------SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVK  778 (950)
T ss_dssp             HHHHHHHHHHHHHHHS------CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCS
T ss_pred             HHHHHHHHHHHHhccc------CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCC
Confidence            3344444444444322      378999999996654   555442 269999999999999 45544322         


Q ss_pred             ----hhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          192 ----VVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       192 ----~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                          ...|+   .++|+++++||+|+|...+
T Consensus       779 nVefiqGDa---~dLp~~d~sFDlVV~~eVL  806 (950)
T 3htx_A          779 SATLYDGSI---LEFDSRLHDVDIGTCLEVI  806 (950)
T ss_dssp             EEEEEESCT---TSCCTTSCSCCEEEEESCG
T ss_pred             ceEEEECch---HhCCcccCCeeEEEEeCch
Confidence                11222   3689999999999997654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.78  E-value=7.6e-06  Score=64.66  Aligned_cols=71  Identities=17%  Similarity=0.188  Sum_probs=44.7

Q ss_pred             CCCeEeeeccchhhc---cCCCCCC-CcEEEecCCHHHHhh-CcCcchhh---hccCCCCCCCCCC-CCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYV---VQDLNLNPKLPFE-DNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~p~LPFe-DnSFDaVtcsvSV  218 (220)
                      +|.+|||+|||.+..   +....++ .+|+|+|.|+++++. +.++....   ++-.+.+...+++ +++||+|+|..++
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~  156 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAG  156 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCch
Confidence            588999999995433   3322212 599999999999984 55443321   1111122223443 7899999998765

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.76  E-value=1e-05  Score=64.62  Aligned_cols=82  Identities=15%  Similarity=0.174  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-----hhccC
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-----VVQDL  196 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-----~VqDL  196 (220)
                      ......+.+.+..    ..  .+|.+|||+|||.+..   +.+..  .+|+|+|.|+++++. +.++...     ...|.
T Consensus        54 ~~~~~~~~~~~~~----~~--~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~  125 (231)
T 1vbf_A           54 TALNLGIFMLDEL----DL--HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDG  125 (231)
T ss_dssp             CCHHHHHHHHHHT----TC--CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCG
T ss_pred             CCHHHHHHHHHhc----CC--CCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc
Confidence            3555555554443    22  2588999999995443   43322  699999999999983 4444321     22232


Q ss_pred             CCCCCCCCCCCCcceEEEeeee
Q 027661          197 NLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       197 N~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ..  .+| ++++||+|+|...+
T Consensus       126 ~~--~~~-~~~~fD~v~~~~~~  144 (231)
T 1vbf_A          126 TL--GYE-EEKPYDRVVVWATA  144 (231)
T ss_dssp             GG--CCG-GGCCEEEEEESSBB
T ss_pred             cc--ccc-cCCCccEEEECCcH
Confidence            22  122 57899999997654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.76  E-value=1.4e-05  Score=64.78  Aligned_cols=69  Identities=17%  Similarity=0.105  Sum_probs=44.5

Q ss_pred             CCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcc--h---hhhccCCCCCC-CCCCCCCcceEEEee
Q 027661          147 TPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLT--E---YVVQDLNLNPK-LPFEDNSFDVITNVC  216 (220)
Q Consensus       147 ~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~--~---~~VqDLN~~p~-LPFeDnSFDaVtcsv  216 (220)
                      ++|.+|||||||.+   .++.+.++.++|+|+|+++++++. +.+..  .   +...|.+.... +|+. ++||+|++.+
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~~  151 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVDVIYEDV  151 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEEEEEECC
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEEEEEEec
Confidence            35889999999944   455554445799999999998862 22211  1   12234433211 6777 8999999653

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.76  E-value=3.3e-06  Score=65.89  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=24.7

Q ss_pred             CCCeEeeeccc---hhhccCCCCC--CCcEEEecCCHH
Q 027661          148 PGVSILDLCSS---WVSHFPPGYK--QDRIVGMGMNEE  180 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~--~~~VVGLGmN~e  180 (220)
                      +|.+|||||||   |..++.+.++  .++|+|+|+++.
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~   59 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM   59 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence            48899999999   4445544443  369999999983

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=97.74  E-value=8.4e-06  Score=66.57  Aligned_cols=68  Identities=4%  Similarity=-0.079  Sum_probs=42.0

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchh--------hhccCCCCCCCCCC---CCCcceE
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEY--------VVQDLNLNPKLPFE---DNSFDVI  212 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~--------~VqDLN~~p~LPFe---DnSFDaV  212 (220)
                      ++.+|||||||.+.   ++.......+|+|+|+|+++++ ++.++...        ...|......-+++   +++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            47899999999654   3333222369999999999998 34333221        22232221111454   4799999


Q ss_pred             EEe
Q 027661          213 TNV  215 (220)
Q Consensus       213 tcs  215 (220)
                      +|.
T Consensus       145 ~~n  147 (254)
T 2h00_A          145 MCN  147 (254)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            986

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.73  E-value=4e-06  Score=73.57  Aligned_cols=66  Identities=11%  Similarity=0.103  Sum_probs=42.8

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhh----hccCCCC-CCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYV----VQDLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||||||.+..   +.+. +..+|+|+|+| ++++ +..++....    +.-++.+ .++|+++++||+|+|.
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~  140 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISE  140 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEc
Confidence            488999999995543   3332 44699999999 5776 343333221    1112222 3568889999999985

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=97.73  E-value=7.8e-06  Score=67.70  Aligned_cols=63  Identities=16%  Similarity=0.181  Sum_probs=43.5

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh------hhccCCCCCCCCCCCCCcceEEEeee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY------VVQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~------~VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      +.+|||+|||.+..   +.+.  ..+|+|+|+|+++++. +.++...      ...|+.   ++|+ +++||+|+|...
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~---~~~~-~~~fD~i~~~~~  193 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDIN---AANI-QENYDFIVSTVV  193 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGG---GCCC-CSCEEEEEECSS
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccc---cccc-cCCccEEEEccc
Confidence            78999999995544   4432  3499999999999983 4444322      223332   3455 899999999764

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.73  E-value=1.8e-05  Score=70.98  Aligned_cols=96  Identities=13%  Similarity=0.047  Sum_probs=58.3

Q ss_pred             cccCcCCCCccCC--CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-Cc
Q 027661          113 DSLFYETPRFVTH--IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NP  186 (220)
Q Consensus       113 D~~FY~~PRfVtH--IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~  186 (220)
                      +-.|+..|-.-++  +|.+..-     .-+.++.  .++.+|||||||++..   +.......+|+|+|+|+++++. +.
T Consensus       192 ~~~~~~~pg~Fs~~~~d~~~~~-----ll~~l~~--~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~  264 (375)
T 4dcm_A          192 DWTIHNHANVFSRTGLDIGARF-----FMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRL  264 (375)
T ss_dssp             TEEEEECTTCTTCSSCCHHHHH-----HHHTCCC--SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             ceEEEeCCCcccCCcccHHHHH-----HHHhCcc--cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHH
Confidence            3445555654444  7775433     3455664  3468999999995544   3222223599999999999983 44


Q ss_pred             Ccchhhhcc------CCCCCCCCCCCCCcceEEEe
Q 027661          187 VLTEYVVQD------LNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       187 rL~~~~VqD------LN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++...-+.+      ...+..-++++++||+|+|.
T Consensus       265 n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~n  299 (375)
T 4dcm_A          265 NVETNMPEALDRCEFMINNALSGVEPFRFNAVLCN  299 (375)
T ss_dssp             HHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEEC
T ss_pred             HHHHcCCCcCceEEEEechhhccCCCCCeeEEEEC
Confidence            443321110      11122226788999999985

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.72  E-value=4.3e-06  Score=74.70  Aligned_cols=68  Identities=10%  Similarity=0.063  Sum_probs=44.2

Q ss_pred             CCCCeEeeeccchhh----ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccC---CCC-CCCCCCCCCcceEEEeee
Q 027661          147 TPGVSILDLCSSWVS----HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDL---NLN-PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       147 ~pG~~VLDLccSWvS----HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDL---N~~-p~LPFeDnSFDaVtcsvS  217 (220)
                      ++|.+|||+|||.+.    -+.. ...++|+|+|+|+++++. +.++.+.-..++   ..+ .++|  |++||+|++...
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~-~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~~a~  197 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSH-VYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMVAAL  197 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHH-TTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEECTT
T ss_pred             CCcCEEEEECCCccHHHHHHHHH-ccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEECCC
Confidence            469999999999531    1211 123699999999999994 555544322111   111 3455  899999998654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=97.72  E-value=6.3e-06  Score=64.59  Aligned_cols=63  Identities=13%  Similarity=0.157  Sum_probs=40.6

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +.+|||+|||.+..   +....+..+|+|+|.|+++++. +.++...       ...|+.   +++ ++++||+|+|.
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~---~~~-~~~~~D~i~~~  139 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVE---EFP-SEPPFDGVISR  139 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTT---TSC-CCSCEEEEECS
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchh---hCC-ccCCcCEEEEe
Confidence            67999999996554   3322234699999999999883 4433222       112322   223 46899999963

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.72  E-value=1.7e-05  Score=65.58  Aligned_cols=67  Identities=18%  Similarity=0.244  Sum_probs=42.5

Q ss_pred             CCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchhh----hccCCCCC-CC--CCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLNP-KL--PFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~p-~L--PFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||.+   .++... ...+|+|+|+|+++++. +.++...-    ++-++.+. ++  .+++++||+|+|.
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~-~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~n  126 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTR-TKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN  126 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTT-CCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchhHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEEC
Confidence            4889999999944   345443 23499999999999883 44333211    11122221 22  2678999999993

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.72  E-value=2e-05  Score=65.81  Aligned_cols=68  Identities=12%  Similarity=0.096  Sum_probs=42.6

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||+|||.+.   ++....+..+|+|+|.|+++++. +.++...-   ++-...+..-++++++||+|+|.
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~n  183 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSN  183 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEEC
Confidence            47799999999543   33333334699999999999983 43332211   11122222224557899999985

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.72  E-value=9.7e-06  Score=67.05  Aligned_cols=35  Identities=14%  Similarity=0.079  Sum_probs=25.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHH
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEEL  182 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eEL  182 (220)
                      +|.+|||||||++..   +.......+|+|+|+|++.|
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~m   61 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENL   61 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGG
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence            488999999998876   33222346899999995444

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=97.68  E-value=4.8e-06  Score=63.95  Aligned_cols=67  Identities=13%  Similarity=0.044  Sum_probs=42.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh----hccCCCCC--CCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLNP--KLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~p--~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||.+..   +... +..+|+|+|+|+++++. +.++...-    ++-++.+.  .+|..+++||+|+|.
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~  107 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD  107 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEEC
Confidence            378999999996554   3332 34699999999999983 44433221    11112221  245556789999985

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.65  E-value=1.1e-05  Score=65.53  Aligned_cols=70  Identities=17%  Similarity=0.142  Sum_probs=45.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh---ccCCCCCCCCCCCCC-cceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLNPKLPFEDNS-FDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~p~LPFeDnS-FDaVtcsvSV  218 (220)
                      +|.+|||+|||.+..   +.+..+ .+|+|+|.|++.++. +.++.....   .-...+...++++++ ||+|+|..++
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~  168 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGA  168 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEECCcH
Confidence            488999999995443   333222 699999999999883 554433211   111222255676665 9999998664

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.65  E-value=4e-06  Score=64.69  Aligned_cols=59  Identities=10%  Similarity=0.113  Sum_probs=40.2

Q ss_pred             CCCCeEeeeccchhhccCCCCCCCcEEEecCCHHHHhh-CcCcc---hhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          147 TPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKR-NPVLT---EYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       147 ~pG~~VLDLccSWvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~---~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++|.+||||+||.             +++|++++|++. +.++.   ++.+.|+...+..++++++||+|+|..++
T Consensus        11 ~~g~~vL~~~~g~-------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l   73 (176)
T 2ld4_A           11 SAGQFVAVVWDKS-------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP   73 (176)
T ss_dssp             CTTSEEEEEECTT-------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred             CCCCEEEEecCCc-------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence            4699999999984             249999999993 44432   23334444222223499999999997654

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=97.64  E-value=4e-05  Score=60.17  Aligned_cols=62  Identities=10%  Similarity=0.124  Sum_probs=41.1

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcc--hhhhccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLT--EYVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~--~~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +|.+|||+|||.+..   +... +..+|+|+|+|+++++. +.++.  ++...|...   +|   ++||+|+|.-
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~---~~---~~~D~v~~~~  118 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE---IS---GKYDTWIMNP  118 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG---CC---CCEEEEEECC
T ss_pred             CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH---CC---CCeeEEEECC
Confidence            478999999995543   4332 34589999999999983 43332  222233332   33   7999999853

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.62  E-value=1.8e-05  Score=72.03  Aligned_cols=68  Identities=21%  Similarity=0.361  Sum_probs=45.4

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhh---hccCCCC-CCCC--CCCCCcceEEE
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYV---VQDLNLN-PKLP--FEDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~~-p~LP--FeDnSFDaVtc  214 (220)
                      ++|.+|||+|||   ...|+.+.++. ++|+|+|.+++.++. +.++...-   +.-.+.+ .++|  |++++||+|+|
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            368999999999   45566554443 799999999999983 44443321   1112222 2334  77789999997

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.62  E-value=9.9e-05  Score=57.89  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=47.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh------hhccC
Q 027661          127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY------VVQDL  196 (220)
Q Consensus       127 Dd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~------~VqDL  196 (220)
                      .....+.+.+.....-+   .+|.+|||+|||.+..   +... +..+|+|+|+|+++++. +.++...      ...|.
T Consensus        31 ~~~~~~~l~~~~~~~~~---~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~  106 (207)
T 1wy7_A           31 PGNAASELLWLAYSLGD---IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV  106 (207)
T ss_dssp             CHHHHHHHHHHHHHTTS---STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG
T ss_pred             chHHHHHHHHHHHHcCC---CCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECch
Confidence            34455555544443312   2488999999995544   4332 34589999999999983 4433321      11222


Q ss_pred             CCCCCCCCCCCCcceEEEee
Q 027661          197 NLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       197 N~~p~LPFeDnSFDaVtcsv  216 (220)
                      .   ++|   ++||+|+|..
T Consensus       107 ~---~~~---~~~D~v~~~~  120 (207)
T 1wy7_A          107 S---EFN---SRVDIVIMNP  120 (207)
T ss_dssp             G---GCC---CCCSEEEECC
T ss_pred             H---HcC---CCCCEEEEcC
Confidence            2   233   4899999853

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=97.61  E-value=3.3e-05  Score=63.08  Aligned_cols=87  Identities=14%  Similarity=0.162  Sum_probs=53.9

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhc----cC
Q 027661          125 HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQ----DL  196 (220)
Q Consensus       125 HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~Vq----DL  196 (220)
                      .+.+...+.|..+... .+     +.+|||||||.+   .++......++|+|+|+|+++++. +.++.+.-+.    -+
T Consensus        54 ~~~~~~~~~l~~~~~~-~~-----~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  127 (232)
T 3ntv_A           54 IVDRLTLDLIKQLIRM-NN-----VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRII  127 (232)
T ss_dssp             CCCHHHHHHHHHHHHH-HT-----CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             CcCHHHHHHHHHHHhh-cC-----CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            4556655656555442 22     679999999944   445553345799999999999983 5554432211    11


Q ss_pred             CCC--CCCC-CCCCCcceEEEeee
Q 027661          197 NLN--PKLP-FEDNSFDVITNVCK  217 (220)
Q Consensus       197 N~~--p~LP-FeDnSFDaVtcsvS  217 (220)
                      ..+  ..+| +.+++||+|+|...
T Consensus       128 ~~d~~~~~~~~~~~~fD~V~~~~~  151 (232)
T 3ntv_A          128 EGNALEQFENVNDKVYDMIFIDAA  151 (232)
T ss_dssp             ESCGGGCHHHHTTSCEEEEEEETT
T ss_pred             ECCHHHHHHhhccCCccEEEEcCc
Confidence            111  1245 55899999998643

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=97.61  E-value=7e-06  Score=66.13  Aligned_cols=85  Identities=13%  Similarity=0.204  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch----hhhccCCC
Q 027661          127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE----YVVQDLNL  198 (220)
Q Consensus       127 Dd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~----~~VqDLN~  198 (220)
                      ...+...+..+... ++    +|.+|||||||.+..   +.+..  .+|+|+|+|+++++. +.++..    +.+.|+..
T Consensus        40 ~~~~~~~~~~~~~~-~~----~~~~vLD~GcG~G~~~~~la~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~  112 (245)
T 3ggd_A           40 ERAVVVDLPRFELL-FN----PELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIAAKENTAANISYRLLDGLV  112 (245)
T ss_dssp             GGTHHHHHHHHTTT-SC----TTSCEEEETCTTSHHHHHHHHHS--SCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTC
T ss_pred             HHHHHHHHHHHhhc-cC----CCCeEEEEcCCCCHHHHHHHHhC--CCEEEEECCHHHHHHHHHhCcccCceEEECcccc
Confidence            33444444444333 33    488999999995444   43322  289999999999983 443321    22233332


Q ss_pred             CC-CCCCCCC-CcceEEEeeee
Q 027661          199 NP-KLPFEDN-SFDVITNVCKT  218 (220)
Q Consensus       199 ~p-~LPFeDn-SFDaVtcsvSV  218 (220)
                      .+ ..+|+++ +||+|+|...+
T Consensus       113 ~~~~~~~~~~~~~d~v~~~~~~  134 (245)
T 3ggd_A          113 PEQAAQIHSEIGDANIYMRTGF  134 (245)
T ss_dssp             HHHHHHHHHHHCSCEEEEESSS
T ss_pred             cccccccccccCccEEEEcchh
Confidence            11 1234333 49999987543

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.60  E-value=1.5e-05  Score=63.88  Aligned_cols=71  Identities=21%  Similarity=0.228  Sum_probs=42.7

Q ss_pred             CCCCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcc-----hhhhccCCCCCCCCCCCCCcceEEEee
Q 027661          147 TPGVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLT-----EYVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       147 ~pG~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~-----~~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      ++|.+|||++||.+   .++.+.++ .++|+|+|.|+++++. ..+..     ++...|......++..+++||+|++..
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~  151 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDV  151 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEECC
Confidence            35889999999944   44544333 2699999999987652 11111     122344443222222246999999865


Q ss_pred             e
Q 027661          217 K  217 (220)
Q Consensus       217 S  217 (220)
                      .
T Consensus       152 ~  152 (227)
T 1g8a_A          152 A  152 (227)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=97.59  E-value=2.7e-05  Score=63.90  Aligned_cols=67  Identities=18%  Similarity=0.281  Sum_probs=43.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcch---------------hhhccCCCCCCCC--CCC
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTE---------------YVVQDLNLNPKLP--FED  206 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~---------------~~VqDLN~~p~LP--FeD  206 (220)
                      +|.+|||+|||.+..   +.......+|+|+|+++++++ ++.++..               +...|...  .||  |++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~--~l~~~~~~  126 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMK--FLPNFFEK  126 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTS--CGGGTSCT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHH--HHHHhccc
Confidence            478999999995554   433333358999999999987 3333221               11122221  266  889


Q ss_pred             CCcceEEEee
Q 027661          207 NSFDVITNVC  216 (220)
Q Consensus       207 nSFDaVtcsv  216 (220)
                      ++||.|++.+
T Consensus       127 ~~~d~v~~~~  136 (246)
T 2vdv_E          127 GQLSKMFFCF  136 (246)
T ss_dssp             TCEEEEEEES
T ss_pred             cccCEEEEEC
Confidence            9999998764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.58  E-value=1.8e-05  Score=63.39  Aligned_cols=67  Identities=13%  Similarity=0.091  Sum_probs=41.4

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh-----hccCCCCC-C-CC-CCCCC-cceEEEe
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV-----VQDLNLNP-K-LP-FEDNS-FDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~-----VqDLN~~p-~-LP-FeDnS-FDaVtcs  215 (220)
                      |.+|||+|||.+..   +... +..+|+|+|+|+++++. +.++...-     +.-++.+. + ++ +++++ ||+|+|.
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            78999999996554   2221 33689999999999983 44332211     11112221 1 22 24789 9999986


Q ss_pred             e
Q 027661          216 C  216 (220)
Q Consensus       216 v  216 (220)
                      .
T Consensus       133 ~  133 (201)
T 2ift_A          133 P  133 (201)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.58  E-value=6.9e-06  Score=63.63  Aligned_cols=66  Identities=14%  Similarity=0.054  Sum_probs=38.4

Q ss_pred             CCCeEeeeccchh---hccCCCCCC---------CcEEEecCCHHHHhhCcCcchhh-hccCCCCC-----CCCCCCCCc
Q 027661          148 PGVSILDLCSSWV---SHFPPGYKQ---------DRIVGMGMNEEELKRNPVLTEYV-VQDLNLNP-----KLPFEDNSF  209 (220)
Q Consensus       148 pG~~VLDLccSWv---SHLP~~v~~---------~~VVGLGmN~eELaaN~rL~~~~-VqDLN~~p-----~LPFeDnSF  209 (220)
                      +|.+|||||||.+   .++.+.++.         ++|+|+|+++...  .+.. ++. ..|+....     .-++++++|
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~--~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~f   98 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP--LEGA-TFLCPADVTDPRTSQRILEVLPGRRA   98 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC--CTTC-EEECSCCTTSHHHHHHHHHHSGGGCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc--CCCC-eEEEeccCCCHHHHHHHHHhcCCCCC
Confidence            4889999999943   334333332         6999999998431  1111 122 22322110     012567899


Q ss_pred             ceEEEee
Q 027661          210 DVITNVC  216 (220)
Q Consensus       210 DaVtcsv  216 (220)
                      |+|+|..
T Consensus        99 D~V~~~~  105 (196)
T 2nyu_A           99 DVILSDM  105 (196)
T ss_dssp             EEEEECC
T ss_pred             cEEEeCC
Confidence            9999854

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.58  E-value=8.5e-06  Score=68.50  Aligned_cols=68  Identities=9%  Similarity=-0.007  Sum_probs=43.0

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCC-CCCCC---CCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLN-PKLPF---EDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~-p~LPF---eDnSFDaVtcs  215 (220)
                      ++.+|||||||.+..   +.......+|+|+|.++++++ ++..+...-..+   ++.+ .++++   .+++||+|+|.
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            478999999996543   332223369999999999998 344443322111   1112 13443   36899999985

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.56  E-value=5.3e-06  Score=70.08  Aligned_cols=68  Identities=22%  Similarity=0.247  Sum_probs=44.4

Q ss_pred             CCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhhc---cCCCC-CCCCC----CCCCcceEEE
Q 027661          148 PGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLN-PKLPF----EDNSFDVITN  214 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~-p~LPF----eDnSFDaVtc  214 (220)
                      +|.+|||+|||   ...|+.+.+.. ++|+|+|.|++.++. +.++...-+.   -.+.+ .+++.    ++++||+|+|
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~  162 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILL  162 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEE
Confidence            58999999999   44555543333 799999999999983 4444432211   11222 13333    3789999998


Q ss_pred             e
Q 027661          215 V  215 (220)
Q Consensus       215 s  215 (220)
                      .
T Consensus       163 d  163 (274)
T 3ajd_A          163 D  163 (274)
T ss_dssp             E
T ss_pred             c
Confidence            6

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.55  E-value=2.3e-05  Score=58.00  Aligned_cols=66  Identities=15%  Similarity=0.170  Sum_probs=40.4

Q ss_pred             CCCeEeeeccchhh---ccCCCCCC-CcEEEecCCHHHHhhCcCcchhhhccCCCCC---CCC--CCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQ-DRIVGMGMNEEELKRNPVLTEYVVQDLNLNP---KLP--FEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~-~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p---~LP--FeDnSFDaVtcsv  216 (220)
                      +|.+|||+|||.+.   ++.+.++. .+|+|+|+|+ ++.. +++ ++...|+...+   .++  +++++||+|+|..
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-~~~-~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~   96 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-VGV-DFLQGDFRDELVMKALLERVGDSKVQVVMSDM   96 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-TTE-EEEESCTTSHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-CcE-EEEEcccccchhhhhhhccCCCCceeEEEECC
Confidence            58899999999433   34333222 5999999999 6554 222 12223333211   122  7889999999843

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.55  E-value=4.4e-05  Score=62.46  Aligned_cols=36  Identities=11%  Similarity=0.121  Sum_probs=26.7

Q ss_pred             CCCeEeeeccchhhc---cCCC--CCCCcEEEecCCHHHHh
Q 027661          148 PGVSILDLCSSWVSH---FPPG--YKQDRIVGMGMNEEELK  183 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~--v~~~~VVGLGmN~eELa  183 (220)
                      ++.+|||+|||.+..   +...  ....+|+|+|+|+++++
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~   91 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLE   91 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHH
Confidence            477999999996544   3222  12258999999999998

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=97.54  E-value=2.4e-05  Score=65.53  Aligned_cols=68  Identities=15%  Similarity=0.119  Sum_probs=43.2

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch-----------hhhccCCCCCC----CCCCCCC
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE-----------YVVQDLNLNPK----LPFEDNS  208 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~-----------~~VqDLN~~p~----LPFeDnS  208 (220)
                      ++.+|||||||.+..   +.......+|+|+|+++++++. +..+..           ....|+.....    -+|++++
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~  115 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH  115 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence            478999999995443   3333333599999999998872 322222           12234333210    1478899


Q ss_pred             cceEEEe
Q 027661          209 FDVITNV  215 (220)
Q Consensus       209 FDaVtcs  215 (220)
                      ||+|+|.
T Consensus       116 fD~Vv~n  122 (260)
T 2ozv_A          116 FHHVIMN  122 (260)
T ss_dssp             EEEEEEC
T ss_pred             cCEEEEC
Confidence            9999995

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.53  E-value=1.7e-05  Score=68.83  Aligned_cols=66  Identities=11%  Similarity=0.090  Sum_probs=41.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhh----hccCCCC-CCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYV----VQDLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||||||.+..   +.+. +..+|+|+|+| ++++ ++.++....    +.-++.+ .++|+++++||+|+|.
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~  112 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISE  112 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred             CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEe
Confidence            478999999995432   3332 34699999999 6766 244333221    1112222 3567888999999985

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.51  E-value=4.7e-05  Score=67.36  Aligned_cols=92  Identities=9%  Similarity=0.042  Sum_probs=51.9

Q ss_pred             CCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh----CcCcchhh
Q 027661          120 PRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR----NPVLTEYV  192 (220)
Q Consensus       120 PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa----N~rL~~~~  192 (220)
                      ++||..=-.    .|.+.....-..  .+|.+|||+|||.+..   |.+. +.++|+|+|++++||+.    ++++..+-
T Consensus        63 ~~yvsrg~~----Kl~~~l~~~~~~--~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~  135 (291)
T 3hp7_A           63 LRYVSRGGL----KLEKALAVFNLS--VEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSME  135 (291)
T ss_dssp             CCSSSTTHH----HHHHHHHHTTCC--CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEEC
T ss_pred             cccccchHH----HHHHHHHhcCCC--ccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceec
Confidence            356654322    444444444322  2488999999995544   3232 34699999999999973    35543221


Q ss_pred             hccCCCCCCCCCCCCCcceEEEeeee
Q 027661          193 VQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       193 VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ..++.....-.+++.+||.|+|.++.
T Consensus       136 ~~ni~~l~~~~l~~~~fD~v~~d~sf  161 (291)
T 3hp7_A          136 QYNFRYAEPVDFTEGLPSFASIDVSF  161 (291)
T ss_dssp             SCCGGGCCGGGCTTCCCSEEEECCSS
T ss_pred             ccCceecchhhCCCCCCCEEEEEeeH
Confidence            11211111111334679999997763

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.51  E-value=7.9e-05  Score=65.12  Aligned_cols=76  Identities=9%  Similarity=0.049  Sum_probs=45.0

Q ss_pred             HHHHHHHhhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecC----CHHHHhh--CcCc--ch-hhhccCCCCC
Q 027661          133 ALTKYYSEVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGM----NEEELKR--NPVL--TE-YVVQDLNLNP  200 (220)
Q Consensus       133 ~LT~lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGm----N~eELaa--N~rL--~~-~~VqDLN~~p  200 (220)
                      .|.++-.+.+.   +||.+|||||||   |..++.+.   ++|+|+|+    +..+|+.  ...+  .. .+++.++. .
T Consensus        70 KL~~i~~~~~~---~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~-~  142 (305)
T 2p41_A           70 KLRWFVERNLV---TPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDV-F  142 (305)
T ss_dssp             HHHHHHHTTSS---CCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCT-T
T ss_pred             HHHHHHHcCCC---CCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEecccc-c
Confidence            45454554332   358999999999   66667664   68999999    5655531  1112  11 11122111 2


Q ss_pred             CCCCCCCCcceEEEeee
Q 027661          201 KLPFEDNSFDVITNVCK  217 (220)
Q Consensus       201 ~LPFeDnSFDaVtcsvS  217 (220)
                      .+  ++++||+|+|-++
T Consensus       143 ~l--~~~~fD~V~sd~~  157 (305)
T 2p41_A          143 FI--PPERCDTLLCDIG  157 (305)
T ss_dssp             TS--CCCCCSEEEECCC
T ss_pred             cC--CcCCCCEEEECCc
Confidence            33  3679999999654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.50  E-value=1.9e-05  Score=67.92  Aligned_cols=68  Identities=12%  Similarity=0.222  Sum_probs=39.5

Q ss_pred             CCCeEeeeccchhhc---cCCCCCC-CcEEEecCCHHHHhh-CcCcchh------------------hhccCCCCCCCCC
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEEELKR-NPVLTEY------------------VVQDLNLNPKLPF  204 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN~eELaa-N~rL~~~------------------~VqDLN~~p~LPF  204 (220)
                      +|.+|||+|||.+.+   +...+++ ++|+|+|++++.++. +.++..+                  ...|+... ..++
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~-~~~~  183 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA-TEDI  183 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC-C---
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHc-cccc
Confidence            589999999995544   4443333 799999999999983 4444322                  11222111 1167


Q ss_pred             CCCCcceEEEee
Q 027661          205 EDNSFDVITNVC  216 (220)
Q Consensus       205 eDnSFDaVtcsv  216 (220)
                      ++++||+|++..
T Consensus       184 ~~~~fD~V~~~~  195 (336)
T 2b25_A          184 KSLTFDAVALDM  195 (336)
T ss_dssp             ----EEEEEECS
T ss_pred             CCCCeeEEEECC
Confidence            888999999853

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.49  E-value=1.6e-05  Score=69.20  Aligned_cols=101  Identities=15%  Similarity=0.103  Sum_probs=59.0

Q ss_pred             CCCCCcccCcCCCCc--cCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCC-CCCcEEEecCCHHH
Q 027661          108 FDESPDSLFYETPRF--VTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGY-KQDRIVGMGMNEEE  181 (220)
Q Consensus       108 ~DesdD~~FY~~PRf--VtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v-~~~~VVGLGmN~eE  181 (220)
                      +|-+.+..+-...|-  -.-+.+...+.+..+    ...  ++|..|||+|||.+..   +.... ...+|+|.|+|+++
T Consensus       167 ~d~sg~~l~~r~yr~~~~a~l~~~la~~l~~~----~~~--~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~  240 (354)
T 3tma_A          167 VQLTERPLSRRFPKAALRGSLTPVLAQALLRL----ADA--RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKR  240 (354)
T ss_dssp             EECCSSCGGGCCGGGCSSCSCCHHHHHHHHHH----TTC--CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHH
T ss_pred             EEccCCcccccccccCCCCCcCHHHHHHHHHH----hCC--CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHH
Confidence            344555544333333  234566555555432    222  3588999999995544   21111 12589999999999


Q ss_pred             Hh-hCcCcchhhhc---cCCCC-CCCCCCCCCcceEEE
Q 027661          182 LK-RNPVLTEYVVQ---DLNLN-PKLPFEDNSFDVITN  214 (220)
Q Consensus       182 La-aN~rL~~~~Vq---DLN~~-p~LPFeDnSFDaVtc  214 (220)
                      ++ ++.++...-+.   -.+.+ .++|+++++||+|+|
T Consensus       241 i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~  278 (354)
T 3tma_A          241 LGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILA  278 (354)
T ss_dssp             HHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEE
T ss_pred             HHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEE
Confidence            98 35544433221   11222 357777788999998

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.49  E-value=4.2e-05  Score=65.63  Aligned_cols=75  Identities=15%  Similarity=0.215  Sum_probs=47.8

Q ss_pred             HHHHHHh---hCCCCCCCCCeEeeeccchhhc---c---CCCCCCCcEEEecCCHHHHh-hCcCcchhhhc-cCC-CCCC
Q 027661          134 LTKYYSE---VFPPSNTPGVSILDLCSSWVSH---F---PPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQ-DLN-LNPK  201 (220)
Q Consensus       134 LT~lY~~---~lp~~~~pG~~VLDLccSWvSH---L---P~~v~~~~VVGLGmN~eELa-aN~rL~~~~Vq-DLN-~~p~  201 (220)
                      |.++|.+   ++++    .++||||+|||+.=   +   ++..   +|+|.|+|+.|++ ++.++..--+. ++. .+..
T Consensus        36 ld~fY~~~~~~l~~----~~~VLDlGCG~GplAl~l~~~~p~a---~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~  108 (200)
T 3fzg_A           36 LNDFYTYVFGNIKH----VSSILDFGCGFNPLALYQWNENEKI---IYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKE  108 (200)
T ss_dssp             HHHHHHHHHHHSCC----CSEEEEETCTTHHHHHHHHCSSCCC---EEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCH
T ss_pred             HHHHHHHHHhhcCC----CCeEEEecCCCCHHHHHHHhcCCCC---EEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccc
Confidence            3455766   4554    56999999997764   2   4444   9999999999999 46666442221 110 1112


Q ss_pred             CCCCCCCcceEEEe
Q 027661          202 LPFEDNSFDVITNV  215 (220)
Q Consensus       202 LPFeDnSFDaVtcs  215 (220)
                      ......+||+|+.-
T Consensus       109 ~~~~~~~~DvVLa~  122 (200)
T 3fzg_A          109 SDVYKGTYDVVFLL  122 (200)
T ss_dssp             HHHTTSEEEEEEEE
T ss_pred             ccCCCCCcChhhHh
Confidence            22456889998753

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.48  E-value=7e-05  Score=63.45  Aligned_cols=66  Identities=12%  Similarity=0.113  Sum_probs=40.9

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhh----hccCCCC-CCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||+|||.+.   ++.... ..+|+|+|+|+++++. +.++...-    ++-.+.+ .++++ +++||+|+|.
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~-~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~  199 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMG  199 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEEC
T ss_pred             CCCEEEEecccCCHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEEC
Confidence            48899999999544   343322 2379999999999983 33222111    1112222 23334 8899999984

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.45  E-value=1.5e-05  Score=74.10  Aligned_cols=67  Identities=9%  Similarity=0.149  Sum_probs=46.4

Q ss_pred             CCCeEeeeccc---hhhccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhh---ccCCCCC-CCCC-CCCCcceEEE
Q 027661          148 PGVSILDLCSS---WVSHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLNP-KLPF-EDNSFDVITN  214 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~p-~LPF-eDnSFDaVtc  214 (220)
                      +|.+|||||||   ...|+.+.++ .++|+|+|+++++++. ..++...-+   .-.+.+. .++. .+++||+|+|
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            58999999999   4556665554 3799999999999983 555544322   2223332 3443 5689999998

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.44  E-value=5.4e-05  Score=61.11  Aligned_cols=63  Identities=14%  Similarity=0.270  Sum_probs=39.8

Q ss_pred             CCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCC----C-CC---CCCcceEEEe
Q 027661          148 PGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL----P-FE---DNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~L----P-Fe---DnSFDaVtcs  215 (220)
                      +|.+|||||||   |..++.+.  .++|+|+|+++...  .+.+ ++...|++.....    . ++   .++||+|+|-
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~~--~~~v-~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd   98 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEMEE--IAGV-RFIRCDIFKETIFDDIDRALREEGIEKVDDVVSD   98 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCCC--CTTC-EEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred             CCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccccc--CCCe-EEEEccccCHHHHHHHHHHhhcccCCcceEEecC
Confidence            58999999999   77777775  68999999997521  1111 1233454442210    0 11   1499999984

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.43  E-value=6.4e-05  Score=60.23  Aligned_cols=67  Identities=13%  Similarity=0.061  Sum_probs=43.3

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh----hccCCCCCCCCC-CCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLNPKLPF-EDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~p~LPF-eDnSFDaVtcsv  216 (220)
                      +|.+|||+|||.+..   +...  ..+|+|+|+|++.++. +.++....    +...+.+..-++ ++++||+|++..
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~  166 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDV  166 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECS
T ss_pred             CCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECC
Confidence            588999999995443   3332  4699999999999983 44433221    122233322234 778999999854

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.42  E-value=5.5e-05  Score=62.95  Aligned_cols=102  Identities=13%  Similarity=0.016  Sum_probs=57.5

Q ss_pred             CCCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHhh
Q 027661          109 DESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELKR  184 (220)
Q Consensus       109 DesdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELaa  184 (220)
                      .++.+.....-+|...-+-+.-++.+.+..    ..  .+|.+|||+|||.+.   ++...+. .++|+|+|+|++.++.
T Consensus        79 ~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~--~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~  152 (277)
T 1o54_A           79 IPSLIDEIMNMKRRTQIVYPKDSSFIAMML----DV--KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKL  152 (277)
T ss_dssp             CCCHHHHHHTCCC-CCCCCHHHHHHHHHHT----TC--CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHH
T ss_pred             CCCHHHHHhhccccCCccCHHHHHHHHHHh----CC--CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHH
Confidence            334444444445544444444444443332    21  258899999999543   3444333 3699999999999883


Q ss_pred             -CcCcchhh----hccCCCCCCCCCCCCCcceEEEee
Q 027661          185 -NPVLTEYV----VQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       185 -N~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                       +..+..+-    +.-.+.+..-.+++++||+|++..
T Consensus       153 a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~  189 (277)
T 1o54_A          153 AESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDV  189 (277)
T ss_dssp             HHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECC
T ss_pred             HHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECC
Confidence             44433221    122222322226778999999853

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.41  E-value=9.2e-05  Score=66.70  Aligned_cols=97  Identities=19%  Similarity=0.284  Sum_probs=58.4

Q ss_pred             cccCcCCCCccC--CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-Cc
Q 027661          113 DSLFYETPRFVT--HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NP  186 (220)
Q Consensus       113 D~~FY~~PRfVt--HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~  186 (220)
                      +-.|+..|-.-.  .+|.+...-+. ...+.+.....+|.+|||||||++..   +.+.  ..+|+|+|.|+++++. +.
T Consensus       197 ~~~~~~~pgvFs~~~~d~~t~~ll~-~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~  273 (381)
T 3dmg_A          197 EYTFHHLPGVFSAGKVDPASLLLLE-ALQERLGPEGVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQK  273 (381)
T ss_dssp             EEEEEECTTCTTTTSCCHHHHHHHH-HHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHH
T ss_pred             eEEEEeCCCceeCCCCCHHHHHHHH-HHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence            335666665433  46765544333 33333321112488999999996654   3332  3599999999999983 44


Q ss_pred             Ccch------hhhccCCCCCCCCCCCCCcceEEEe
Q 027661          187 VLTE------YVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       187 rL~~------~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++..      +...|.   .++++++++||+|+|.
T Consensus       274 n~~~~~~~v~~~~~D~---~~~~~~~~~fD~Ii~n  305 (381)
T 3dmg_A          274 GLEANALKAQALHSDV---DEALTEEARFDIIVTN  305 (381)
T ss_dssp             HHHHTTCCCEEEECST---TTTSCTTCCEEEEEEC
T ss_pred             HHHHcCCCeEEEEcch---hhccccCCCeEEEEEC
Confidence            4332      122332   2455678999999985

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.41  E-value=4.2e-05  Score=66.49  Aligned_cols=68  Identities=15%  Similarity=0.095  Sum_probs=41.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh--ccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV--QDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V--qDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      ++.+|||||||.+..   +.+.....+|+|+|.|+++++. +.++...-+  +-+..+ -+++.+++||+|+|..
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d-~~~~~~~~fD~Iv~~~  269 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASN-VFSEVKGRFDMIISNP  269 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECS-TTTTCCSCEEEEEECC
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcc-ccccccCCeeEEEECC
Confidence            367999999995554   3222222489999999999983 444332111  001111 1234578999999963

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.38  E-value=0.00017  Score=59.82  Aligned_cols=87  Identities=10%  Similarity=-0.021  Sum_probs=49.8

Q ss_pred             CCCC-HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCC---C-CCCcEEEecCCHHHHhhCcCcch---hh
Q 027661          124 THID-DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPG---Y-KQDRIVGMGMNEEELKRNPVLTE---YV  192 (220)
Q Consensus       124 tHID-d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~---v-~~~~VVGLGmN~eELaaN~rL~~---~~  192 (220)
                      +++. ....+.+.++... .+     +.+|||||||.+   .+|.+.   + ..++|+|+|+++++++.-..+..   +.
T Consensus        62 ~~~~~p~~~~~l~~~l~~-~~-----~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~  135 (236)
T 2bm8_A           62 RMLKDPDTQAVYHDMLWE-LR-----PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLH  135 (236)
T ss_dssp             ECCSCHHHHHHHHHHHHH-HC-----CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEE
T ss_pred             cccCCHHHHHHHHHHHHh-cC-----CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEE
Confidence            3444 4444555444433 22     569999999933   334332   1 23699999999999884212221   12


Q ss_pred             hccCCCCCCCCCCC-CCcceEEEee
Q 027661          193 VQDLNLNPKLPFED-NSFDVITNVC  216 (220)
Q Consensus       193 VqDLN~~p~LPFeD-nSFDaVtcsv  216 (220)
                      ..|......||+.+ .+||+|++..
T Consensus       136 ~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A          136 QGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             ECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             ECcchhHHHHHhhccCCCCEEEECC
Confidence            23333221256544 4899998754

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.38  E-value=0.00025  Score=61.22  Aligned_cols=81  Identities=10%  Similarity=0.070  Sum_probs=49.7

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhh---hccCCC
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV---VQDLNL  198 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~---VqDLN~  198 (220)
                      +|+..++.+.+..    ..  .+|.+|||+|||.+.   +|.+.  ..+|+|+|+++++++. +.++....   ++-++.
T Consensus        26 ~~~~i~~~i~~~~----~~--~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~   97 (299)
T 2h1r_A           26 KNPGILDKIIYAA----KI--KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEG   97 (299)
T ss_dssp             CCHHHHHHHHHHH----CC--CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC---
T ss_pred             cCHHHHHHHHHhc----CC--CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEC
Confidence            3777777776543    22  248899999999554   45553  3699999999999883 44332110   111122


Q ss_pred             C-CCCCCCCCCcceEEEee
Q 027661          199 N-PKLPFEDNSFDVITNVC  216 (220)
Q Consensus       199 ~-p~LPFeDnSFDaVtcsv  216 (220)
                      + .++|+  .+||+|+|..
T Consensus        98 D~~~~~~--~~~D~Vv~n~  114 (299)
T 2h1r_A           98 DAIKTVF--PKFDVCTANI  114 (299)
T ss_dssp             -CCSSCC--CCCSEEEEEC
T ss_pred             chhhCCc--ccCCEEEEcC
Confidence            2 24455  3899999853

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.37  E-value=2.8e-05  Score=68.30  Aligned_cols=68  Identities=21%  Similarity=0.320  Sum_probs=44.1

Q ss_pred             CCCCeEeeeccc---hhhccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhc---cCCCC-CCCCCCC---CCcceEEE
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQ---DLNLN-PKLPFED---NSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~Vq---DLN~~-p~LPFeD---nSFDaVtc  214 (220)
                      +||.+|||+|||   ...|+.+.+. .++|+++|.+++.++. ..++..+-+.   -++.+ .+++..+   .+||+|+|
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~  180 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL  180 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence            369999999999   4456655433 3799999999999983 5555443221   11222 2333322   58999997

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.37  E-value=7.4e-05  Score=66.30  Aligned_cols=67  Identities=10%  Similarity=0.133  Sum_probs=41.9

Q ss_pred             CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh----hccCCCC-CCCCCCCCCcceEEEee
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV----VQDLNLN-PKLPFEDNSFDVITNVC  216 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~----VqDLN~~-p~LPFeDnSFDaVtcsv  216 (220)
                      .+|.+|||||||.+..   +.+. +..+|+|+|+| ++++. +.++....    +.-+..+ .+++++ ++||+|+|..
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~  137 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEW  137 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECC
T ss_pred             CCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcC
Confidence            3588999999995443   4332 34699999999 88773 44443221    1111112 244555 8999999843

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.37  E-value=9e-05  Score=61.34  Aligned_cols=68  Identities=12%  Similarity=0.004  Sum_probs=42.8

Q ss_pred             CCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhc----cCCCCC--CCCCC--CCCcceEEEe
Q 027661          149 GVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQ----DLNLNP--KLPFE--DNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~Vq----DLN~~p--~LPFe--DnSFDaVtcs  215 (220)
                      +.+|||||||.+   .++...++ .++|+|+|+|+++++. +.++.+.-+.    -...+.  .+|..  +++||+|+|.
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d  143 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID  143 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence            679999999944   34555444 4799999999999983 5554432111    111111  23432  4599999975


Q ss_pred             e
Q 027661          216 C  216 (220)
Q Consensus       216 v  216 (220)
                      .
T Consensus       144 ~  144 (248)
T 3tfw_A          144 A  144 (248)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.36  E-value=2.6e-05  Score=62.89  Aligned_cols=87  Identities=13%  Similarity=0.069  Sum_probs=51.8

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh----hccC
Q 027661          125 HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV----VQDL  196 (220)
Q Consensus       125 HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~----VqDL  196 (220)
                      -+++...+.|.++-. ..     ++.+|||+|||.+..   +....+.++|+|+|.|++.++. +.++...-    +.-.
T Consensus        37 ~~~~~~~~~l~~~~~-~~-----~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~  110 (233)
T 2gpy_A           37 IMDLLGMESLLHLLK-MA-----APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELL  110 (233)
T ss_dssp             CCCHHHHHHHHHHHH-HH-----CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred             CcCHHHHHHHHHHHh-cc-----CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            356665555555443 22     267999999995432   3332224699999999999983 54443321    1111


Q ss_pred             CCC--CCCCCC--CCCcceEEEeee
Q 027661          197 NLN--PKLPFE--DNSFDVITNVCK  217 (220)
Q Consensus       197 N~~--p~LPFe--DnSFDaVtcsvS  217 (220)
                      +.+  ..+|..  +++||+|+|...
T Consensus       111 ~~d~~~~~~~~~~~~~fD~I~~~~~  135 (233)
T 2gpy_A          111 FGDALQLGEKLELYPLFDVLFIDAA  135 (233)
T ss_dssp             CSCGGGSHHHHTTSCCEEEEEEEGG
T ss_pred             ECCHHHHHHhcccCCCccEEEECCC
Confidence            122  123433  789999998764

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.35  E-value=5.6e-05  Score=60.18  Aligned_cols=68  Identities=16%  Similarity=0.141  Sum_probs=42.2

Q ss_pred             CCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhcc----CCCC-----CCCCCC-CCCcceEE
Q 027661          149 GVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQD----LNLN-----PKLPFE-DNSFDVIT  213 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~VqD----LN~~-----p~LPFe-DnSFDaVt  213 (220)
                      +.+|||||||.+   .++.+.+. .++|+|+|+|+++++. +.++...-..+    +..+     +.++-. +++||+|+
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~  138 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF  138 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence            679999999944   34555544 4799999999999983 55444321111    1111     122222 26899999


Q ss_pred             Eee
Q 027661          214 NVC  216 (220)
Q Consensus       214 csv  216 (220)
                      |..
T Consensus       139 ~d~  141 (223)
T 3duw_A          139 IDA  141 (223)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            754

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.34  E-value=4e-05  Score=64.89  Aligned_cols=65  Identities=8%  Similarity=0.008  Sum_probs=42.1

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcch-------hhhccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTE-------YVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~-------~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +|.+|||+|||.+.   ++....+.++|+|+|+|+++++. +..+..       +...|...   +|. +++||+|++..
T Consensus       119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~---~~~-~~~~D~Vi~d~  194 (272)
T 3a27_A          119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRD---VEL-KDVADRVIMGY  194 (272)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGG---CCC-TTCEEEEEECC
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHH---cCc-cCCceEEEECC
Confidence            48899999999544   45444444699999999999882 322211       12233222   244 77999998753

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.33  E-value=0.00015  Score=58.18  Aligned_cols=87  Identities=14%  Similarity=0.155  Sum_probs=51.2

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhh----c
Q 027661          124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVV----Q  194 (220)
Q Consensus       124 tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~V----q  194 (220)
                      .++.+.....|..+-. ..+     +.+|||||||.+   .++...+. .++|+|+|+|+++++. +.++...-.    +
T Consensus        40 ~~~~~~~~~~l~~l~~-~~~-----~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~  113 (221)
T 3u81_A           40 MNVGDAKGQIMDAVIR-EYS-----PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVT  113 (221)
T ss_dssp             GGCCHHHHHHHHHHHH-HHC-----CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEE
T ss_pred             cccCHHHHHHHHHHHH-hcC-----CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceE
Confidence            4566665555544433 223     679999999944   44554443 3699999999999983 544433211    1


Q ss_pred             cCCCC-----CCC--CCCCCCcceEEEee
Q 027661          195 DLNLN-----PKL--PFEDNSFDVITNVC  216 (220)
Q Consensus       195 DLN~~-----p~L--PFeDnSFDaVtcsv  216 (220)
                      -+..+     +.+  .++.++||+|+|..
T Consensus       114 ~~~~d~~~~l~~~~~~~~~~~fD~V~~d~  142 (221)
T 3u81_A          114 ILNGASQDLIPQLKKKYDVDTLDMVFLDH  142 (221)
T ss_dssp             EEESCHHHHGGGTTTTSCCCCCSEEEECS
T ss_pred             EEECCHHHHHHHHHHhcCCCceEEEEEcC
Confidence            11111     122  13348999999864

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.32  E-value=2.2e-05  Score=69.11  Aligned_cols=71  Identities=20%  Similarity=0.176  Sum_probs=44.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhh--hccCCCC-CCCC--C---CCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYV--VQDLNLN-PKLP--F---EDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~--VqDLN~~-p~LP--F---eDnSFDaVtcs  215 (220)
                      +|.+|||+|||.+.|   +.+.++.++|+|+|.|+++|+ ++.++..+-  +.-+..+ ..||  +   ..++||+|++-
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~D  105 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD  105 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEEEc
Confidence            588999999998877   333233469999999999998 355554421  1111111 1233  1   22689999986


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      .++
T Consensus       106 ~gv  108 (301)
T 1m6y_A          106 LGV  108 (301)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.31  E-value=3.4e-05  Score=64.57  Aligned_cols=36  Identities=17%  Similarity=0.189  Sum_probs=27.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR  184 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa  184 (220)
                      +|.+|||||||.+..   |.+. +..+|+|+|++++||+.
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~   75 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAW   75 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCH
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHH
Confidence            478999999996654   4333 33599999999999884

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.30  E-value=6.3e-05  Score=59.77  Aligned_cols=87  Identities=8%  Similarity=0.031  Sum_probs=50.5

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhcc---
Q 027661          124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQD---  195 (220)
Q Consensus       124 tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~VqD---  195 (220)
                      .++.+.....|..+- ...+     +.+|||||||.+   .++...++ .++|+|+|.|+++++. +.++...-+.+   
T Consensus        46 ~~~~~~~~~~l~~l~-~~~~-----~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~  119 (225)
T 3tr6_A           46 MQTAPEQAQLLALLV-KLMQ-----AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIG  119 (225)
T ss_dssp             GSCCHHHHHHHHHHH-HHHT-----CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred             cccCHHHHHHHHHHH-HhhC-----CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceE
Confidence            445555544444333 3333     679999999943   44555444 4799999999999983 55544322111   


Q ss_pred             -CCCCC--CCC-----CCCCCcceEEEee
Q 027661          196 -LNLNP--KLP-----FEDNSFDVITNVC  216 (220)
Q Consensus       196 -LN~~p--~LP-----FeDnSFDaVtcsv  216 (220)
                       +..+.  .+|     +..++||+|++..
T Consensus       120 ~~~~d~~~~~~~~~~~~~~~~fD~v~~~~  148 (225)
T 3tr6_A          120 LRLSPAKDTLAELIHAGQAWQYDLIYIDA  148 (225)
T ss_dssp             EEESCHHHHHHHHHTTTCTTCEEEEEECS
T ss_pred             EEeCCHHHHHHHhhhccCCCCccEEEECC
Confidence             11111  122     2238999999754

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.26  E-value=0.00042  Score=57.03  Aligned_cols=85  Identities=9%  Similarity=0.118  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh-------hccCCCCCCCcEEEecCCHHHHh-hCcCcchhhh----
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV-------SHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVV----  193 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv-------SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~V----  193 (220)
                      ++....+.|..+ ....++  +++.+|||||||.+       .++|++   ++|+|+|.|+++++ ++..+...-+    
T Consensus        37 i~~~~~~~l~~l-~~~~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~---~~v~~vD~~~~~~~~a~~~~~~~g~~~~~  110 (221)
T 3dr5_A           37 PDEMTGQLLTTL-AATTNG--NGSTGAIAITPAAGLVGLYILNGLADN---TTLTCIDPESEHQRQAKALFREAGYSPSR  110 (221)
T ss_dssp             CCHHHHHHHHHH-HHHSCC--TTCCEEEEESTTHHHHHHHHHHHSCTT---SEEEEECSCHHHHHHHHHHHHHTTCCGGG
T ss_pred             CCHHHHHHHHHH-HHhhCC--CCCCCEEEEcCCchHHHHHHHHhCCCC---CEEEEEECCHHHHHHHHHHHHHcCCCcCc
Confidence            455544444433 444443  24669999999943       234433   69999999999998 3555544222    


Q ss_pred             -ccCCCCC--CCC-CCCCCcceEEEee
Q 027661          194 -QDLNLNP--KLP-FEDNSFDVITNVC  216 (220)
Q Consensus       194 -qDLN~~p--~LP-FeDnSFDaVtcsv  216 (220)
                       +-++.+.  .+| +++++||.|+|..
T Consensus       111 i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A          111 VRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             EEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             EEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence             1122221  222 4479999999854

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.24  E-value=3e-05  Score=72.48  Aligned_cols=68  Identities=13%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhh--hccCCCCC-CCC-CCCCCcceEEE
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYV--VQDLNLNP-KLP-FEDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~p-~LP-FeDnSFDaVtc  214 (220)
                      ++|.+|||||||   ...|+...+.. ++|+|+|+|+++++. ..++...-  +.-++.+. +++ +.+++||+|+|
T Consensus       100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A          100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEE
Confidence            369999999999   44566554443 799999999999984 55554432  22333332 333 45789999996

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.24  E-value=4.6e-05  Score=70.75  Aligned_cols=36  Identities=14%  Similarity=0.068  Sum_probs=27.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa  183 (220)
                      +|.+|||||||++..   +....+..+|+|+|+++++++
T Consensus       242 ~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~  280 (433)
T 1u2z_A          242 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASD  280 (433)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHH
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence            589999999998776   333233358999999999766

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.24  E-value=0.00017  Score=57.11  Aligned_cols=67  Identities=10%  Similarity=0.143  Sum_probs=42.2

Q ss_pred             CCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhh----ccCCCCC--CCCCCCCCcceEEEee
Q 027661          149 GVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVV----QDLNLNP--KLPFEDNSFDVITNVC  216 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~V----qDLN~~p--~LPFeDnSFDaVtcsv  216 (220)
                      +.+|||+|||.+.   ++...+. .++|+|+|.|+++++. +.++...-.    +-+..+.  .+|..++ ||+|++..
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            5699999999443   3444333 4799999999999983 544443211    1112221  2355556 99999853

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.22  E-value=6e-05  Score=67.89  Aligned_cols=68  Identities=22%  Similarity=0.285  Sum_probs=44.1

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCC-CCCC--CCCCCcceEEE
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLN-PKLP--FEDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~-p~LP--FeDnSFDaVtc  214 (220)
                      ++|.+|||+|||   ...|+.+....++|+|+|.|++.++. ..++...-  +.-.+.+ .+++  |++++||+|++
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEE
Confidence            368999999999   44565544433799999999998873 44433221  1111112 1333  67789999996

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=97.14  E-value=7.4e-05  Score=64.75  Aligned_cols=73  Identities=8%  Similarity=0.025  Sum_probs=44.0

Q ss_pred             HhhCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc----CCCC-CCCCCCCCCc
Q 027661          139 SEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD----LNLN-PKLPFEDNSF  209 (220)
Q Consensus       139 ~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD----LN~~-p~LPFeDnSF  209 (220)
                      .+++++    |.+|||+|||++   ..+.......+|+|+|+|+..|+ +...+...-+.+    ...+ .+.+.+++.|
T Consensus        16 ~~~v~~----g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~   91 (244)
T 3gnl_A           16 ASYITK----NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAI   91 (244)
T ss_dssp             HTTCCS----SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred             HHhCCC----CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccc
Confidence            456664    889999999943   33444322358999999999999 344444332211    1111 2233344579


Q ss_pred             ceEEEe
Q 027661          210 DVITNV  215 (220)
Q Consensus       210 DaVtcs  215 (220)
                      |+|+++
T Consensus        92 D~Ivia   97 (244)
T 3gnl_A           92 DTIVIA   97 (244)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            997753

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.14  E-value=0.00015  Score=59.23  Aligned_cols=68  Identities=10%  Similarity=-0.009  Sum_probs=43.9

Q ss_pred             CCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhh----ccCCCC-----CCCCCCC--CCcceE
Q 027661          149 GVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVV----QDLNLN-----PKLPFED--NSFDVI  212 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~V----qDLN~~-----p~LPFeD--nSFDaV  212 (220)
                      +.+|||+|||.+   .++...+. .++|+|+|.|++.++. +..+...-.    +-...+     +.+|+++  ++||+|
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V  152 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI  152 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence            569999999944   33444333 3699999999999883 544433211    111111     3567777  899999


Q ss_pred             EEee
Q 027661          213 TNVC  216 (220)
Q Consensus       213 tcsv  216 (220)
                      +|..
T Consensus       153 ~~d~  156 (232)
T 3cbg_A          153 FIDA  156 (232)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9754

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=97.11  E-value=0.00027  Score=60.45  Aligned_cols=81  Identities=11%  Similarity=0.063  Sum_probs=50.5

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh----hhccCC
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY----VVQDLN  197 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~----~VqDLN  197 (220)
                      +|+..++.+.+..    ..  .+|.+|||+|||.+..   |.+.  ..+|+|+|+++++++. +.++...    -++-++
T Consensus        12 ~d~~i~~~i~~~~----~~--~~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~   83 (285)
T 1zq9_A           12 KNPLIINSIIDKA----AL--RPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPVASKLQVLV   83 (285)
T ss_dssp             CCHHHHHHHHHHT----CC--CTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEE
T ss_pred             CCHHHHHHHHHhc----CC--CCCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEE
Confidence            3888887776553    22  2488999999995554   4332  2599999999999983 4443221    011111


Q ss_pred             CC-CCCCCCCCCcceEEEee
Q 027661          198 LN-PKLPFEDNSFDVITNVC  216 (220)
Q Consensus       198 ~~-p~LPFeDnSFDaVtcsv  216 (220)
                      .+ .++|++  +||+|++..
T Consensus        84 ~D~~~~~~~--~fD~vv~nl  101 (285)
T 1zq9_A           84 GDVLKTDLP--FFDTCVANL  101 (285)
T ss_dssp             SCTTTSCCC--CCSEEEEEC
T ss_pred             cceecccch--hhcEEEEec
Confidence            22 234554  799999864

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.08  E-value=3.4e-05  Score=71.87  Aligned_cols=69  Identities=23%  Similarity=0.312  Sum_probs=46.5

Q ss_pred             CCCCeEeeeccch---hhccCCCCCC-CcEEEecCCHHHHhh-CcCcchhhhcc---CCCCC-CCC-CCCCCcceEEEe
Q 027661          147 TPGVSILDLCSSW---VSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEYVVQD---LNLNP-KLP-FEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccSW---vSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~p-~LP-FeDnSFDaVtcs  215 (220)
                      ++|.+|||||||.   ..|+...+.. ++|+++|++++.++. ..++...-+.+   .+.+. +++ +.+++||+|+|-
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            3699999999994   4566554433 799999999999984 55555543322   23332 233 346899999973

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.07  E-value=0.00038  Score=60.41  Aligned_cols=36  Identities=8%  Similarity=0.068  Sum_probs=26.2

Q ss_pred             CCeEeeeccchhhc-----------cCCCCCCCcEEEecCCHHHHhh
Q 027661          149 GVSILDLCSSWVSH-----------FPPGYKQDRIVGMGMNEEELKR  184 (220)
Q Consensus       149 G~~VLDLccSWvSH-----------LP~~v~~~~VVGLGmN~eELaa  184 (220)
                      +.+|||+|||.+-+           +|..-...+|+|.|+|+++|+.
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~  152 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEK  152 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHH
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHH
Confidence            57999999996642           3421102389999999999993

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=97.04  E-value=0.0003  Score=59.25  Aligned_cols=66  Identities=11%  Similarity=0.131  Sum_probs=41.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||+|||.+..   +.+.....+|+|+|++ ++++. +.++.+.        ...|+.   ++|++++ ||+|+|.
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~-~D~v~~~  239 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAF---EVDYGND-YDLVLLP  239 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTT---TSCCCSC-EEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccc---cCCCCCC-CcEEEEc
Confidence            378999999995433   3322223599999999 88883 4443321        223332   2366665 9999997


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      ..+
T Consensus       240 ~~l  242 (335)
T 2r3s_A          240 NFL  242 (335)
T ss_dssp             SCG
T ss_pred             chh
Confidence            543

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=97.03  E-value=0.00017  Score=61.86  Aligned_cols=73  Identities=16%  Similarity=0.063  Sum_probs=44.7

Q ss_pred             HhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc----CCCC-CCCCCCCCCc
Q 027661          139 SEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD----LNLN-PKLPFEDNSF  209 (220)
Q Consensus       139 ~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD----LN~~-p~LPFeDnSF  209 (220)
                      .+++++    |.+|||+|||++.   .+...-...+|+|.|+|+..++ +...+..+-+.+    ...+ .+.+.+++.|
T Consensus        16 ~~~v~~----g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~   91 (230)
T 3lec_A           16 ANYVPK----GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNI   91 (230)
T ss_dssp             HTTSCT----TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred             HHhCCC----CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccccccc
Confidence            456664    8899999999442   3333222358999999999999 355544432211    1111 2334455689


Q ss_pred             ceEEEe
Q 027661          210 DVITNV  215 (220)
Q Consensus       210 DaVtcs  215 (220)
                      |+|+++
T Consensus        92 D~Ivia   97 (230)
T 3lec_A           92 DTITIC   97 (230)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            987643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.98  E-value=0.00017  Score=60.14  Aligned_cols=67  Identities=15%  Similarity=0.139  Sum_probs=40.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +|.+|||+|||.+..   +.. .+. +|+|+|+++++++. +.++...-  ++-...+..-++++++||+|+|..
T Consensus       120 ~~~~VLDiGcG~G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~  192 (254)
T 2nxc_A          120 PGDKVLDLGTGSGVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL  192 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC
T ss_pred             CCCEEEEecCCCcHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECC
Confidence            488999999996543   332 233 99999999999883 33332211  111111111125578999999864

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=96.98  E-value=0.00023  Score=60.60  Aligned_cols=67  Identities=18%  Similarity=0.134  Sum_probs=42.0

Q ss_pred             CCeEeeeccch---hhc---cCCCCCCCcEEEecCCHHHHhh-CcCcc-----hhhhccCCCCC----------CCCCCC
Q 027661          149 GVSILDLCSSW---VSH---FPPGYKQDRIVGMGMNEEELKR-NPVLT-----EYVVQDLNLNP----------KLPFED  206 (220)
Q Consensus       149 G~~VLDLccSW---vSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~-----~~~VqDLN~~p----------~LPFeD  206 (220)
                      ..+|||||||.   +.-   +.......+|+|+|+++++|+. +.++.     ++...|+....          .+||  
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~--  155 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF--  155 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT--
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC--
Confidence            47999999997   521   1111122599999999999983 54442     23335554321          2444  


Q ss_pred             CCcceEEEeee
Q 027661          207 NSFDVITNVCK  217 (220)
Q Consensus       207 nSFDaVtcsvS  217 (220)
                      ++||+|++...
T Consensus       156 ~~~d~v~~~~v  166 (274)
T 2qe6_A          156 SRPAAIMLVGM  166 (274)
T ss_dssp             TSCCEEEETTT
T ss_pred             CCCEEEEEech
Confidence            49999998653

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.97  E-value=0.00012  Score=69.12  Aligned_cols=68  Identities=13%  Similarity=-0.005  Sum_probs=41.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcch-------hh-----hccCCCC-CCCCCCC--CC
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTE-------YV-----VQDLNLN-PKLPFED--NS  208 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~-------~~-----VqDLN~~-p~LPFeD--nS  208 (220)
                      +|.+|||||||.+..   +....+..+|+|+|+++++++ ++.....       +-     +.-+..+ .++||++  .+
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~~  252 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIAN  252 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHHT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccCC
Confidence            589999999996654   332233357999999998777 2322211       10     1111112 3577765  58


Q ss_pred             cceEEEe
Q 027661          209 FDVITNV  215 (220)
Q Consensus       209 FDaVtcs  215 (220)
                      ||+|+|.
T Consensus       253 aDVVf~N  259 (438)
T 3uwp_A          253 TSVIFVN  259 (438)
T ss_dssp             CSEEEEC
T ss_pred             ccEEEEc
Confidence            9999874

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=96.92  E-value=0.00037  Score=60.87  Aligned_cols=67  Identities=13%  Similarity=0.079  Sum_probs=42.8

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCCCCCCCCCcceEEEee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +.+|||||||.+..   +.+.....+|+|+|+ +++++. ++++.+.        ...|+... .+|++ ++||+|+|..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~p-~~~D~v~~~~  256 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDR-DVPFP-TGFDAVWMSQ  256 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSS-SCCCC-CCCSEEEEES
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEcccccc-CCCCC-CCcCEEEEec
Confidence            57999999995544   333223358999999 888873 4443321        22343322 23566 8999999976


Q ss_pred             ee
Q 027661          217 KT  218 (220)
Q Consensus       217 SV  218 (220)
                      .+
T Consensus       257 vl  258 (363)
T 3dp7_A          257 FL  258 (363)
T ss_dssp             CS
T ss_pred             hh
Confidence            54

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=96.89  E-value=0.00034  Score=61.51  Aligned_cols=83  Identities=10%  Similarity=0.060  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-hhccCCCC-
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-VVQDLNLN-  199 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-~VqDLN~~-  199 (220)
                      +|...++++.+..    ..  ++|.+|||+|||.+..   |.+.  ..+|+|+|+++++++. +.++... -++-++.+ 
T Consensus        34 ~d~~i~~~Iv~~l----~~--~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~  105 (295)
T 3gru_A           34 IDKNFVNKAVESA----NL--TKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDA  105 (295)
T ss_dssp             CCHHHHHHHHHHT----TC--CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCT
T ss_pred             CCHHHHHHHHHhc----CC--CCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECch
Confidence            6888888776543    21  2488999999995543   4332  3699999999999983 5444321 11112222 


Q ss_pred             CCCCCCCCCcceEEEee
Q 027661          200 PKLPFEDNSFDVITNVC  216 (220)
Q Consensus       200 p~LPFeDnSFDaVtcsv  216 (220)
                      .++++++.+||+|++..
T Consensus       106 l~~~~~~~~fD~Iv~Nl  122 (295)
T 3gru_A          106 LKVDLNKLDFNKVVANL  122 (295)
T ss_dssp             TTSCGGGSCCSEEEEEC
T ss_pred             hhCCcccCCccEEEEeC
Confidence            36688888999999764

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=96.87  E-value=0.00041  Score=60.66  Aligned_cols=62  Identities=8%  Similarity=0.098  Sum_probs=38.7

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh--------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||||||++..   +.+ .+..+|+|+|+|+ +++ ++.++...        ...|+.   +++++ ++||+|++.
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~-~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~---~~~~~-~~~D~Ivs~  123 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVE---EVSLP-EQVDIIISE  123 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHH-TTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTT---TCCCS-SCEEEEEEC
T ss_pred             CcCEEEEcCCCccHHHHHHHh-CCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchh---hCCCC-CceeEEEEe
Confidence            588999999997664   222 1336999999995 655 23332211        112222   34454 689999986

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.87  E-value=0.00052  Score=58.02  Aligned_cols=49  Identities=16%  Similarity=0.027  Sum_probs=32.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecC-CHHHHh
Q 027661          132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGM-NEEELK  183 (220)
Q Consensus       132 ~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGm-N~eELa  183 (220)
                      ..|.++..+....  .+|.+|||||||.+..   +.. .+..+|+|+|+ ++++++
T Consensus        65 ~~l~~~l~~~~~~--~~~~~vLDlG~G~G~~~~~~a~-~~~~~v~~~D~s~~~~~~  117 (281)
T 3bzb_A           65 RALADTLCWQPEL--IAGKTVCELGAGAGLVSIVAFL-AGADQVVATDYPDPEILN  117 (281)
T ss_dssp             HHHHHHHHHCGGG--TTTCEEEETTCTTSHHHHHHHH-TTCSEEEEEECSCHHHHH
T ss_pred             HHHHHHHHhcchh--cCCCeEEEecccccHHHHHHHH-cCCCEEEEEeCCCHHHHH
Confidence            3444444444321  2478999999996654   322 23358999999 899987

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.86  E-value=0.0002  Score=61.34  Aligned_cols=65  Identities=8%  Similarity=0.007  Sum_probs=39.5

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhh----hccCCCCCCCCCCCCCc---ceEEEe
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYV----VQDLNLNPKLPFEDNSF---DVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~p~LPFeDnSF---DaVtcs  215 (220)
                      +.+|||||||.+..   +... ...+|+|+|+|+++++ ++.++...-    ++-+..+..-+++ ++|   |+|+|.
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~-~~f~~~D~Ivsn  199 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-EKFASIEMILSN  199 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-GGTTTCCEEEEC
T ss_pred             CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc-cccCCCCEEEEc
Confidence            67999999995443   4333 3469999999999998 344333221    1111112111232 489   999984

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=96.86  E-value=0.00077  Score=58.45  Aligned_cols=90  Identities=8%  Similarity=0.122  Sum_probs=57.2

Q ss_pred             cCCCCccCC--CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch
Q 027661          117 YETPRFVTH--IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE  190 (220)
Q Consensus       117 Y~~PRfVtH--IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~  190 (220)
                      -...++..|  +|...++++-+...  +    ++| +|||+|||++..   |.+.  ..+|+|+|+++++++. +.++..
T Consensus        20 ~~~k~~GQnfL~d~~i~~~Iv~~~~--~----~~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~~   90 (271)
T 3fut_A           20 FADKRFGQNFLVSEAHLRRIVEAAR--P----FTG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLSG   90 (271)
T ss_dssp             CCSTTSSCCEECCHHHHHHHHHHHC--C----CCS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTTT
T ss_pred             CccccCCccccCCHHHHHHHHHhcC--C----CCC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcCC
Confidence            344566776  69988888866542  2    248 999999997655   4443  2699999999999983 444432


Q ss_pred             hhhccCCCC-CCCCCCCC-CcceEEEe
Q 027661          191 YVVQDLNLN-PKLPFEDN-SFDVITNV  215 (220)
Q Consensus       191 ~~VqDLN~~-p~LPFeDn-SFDaVtcs  215 (220)
                      .-++-++.+ .++++++. .||.|+..
T Consensus        91 ~~v~vi~~D~l~~~~~~~~~~~~iv~N  117 (271)
T 3fut_A           91 LPVRLVFQDALLYPWEEVPQGSLLVAN  117 (271)
T ss_dssp             SSEEEEESCGGGSCGGGSCTTEEEEEE
T ss_pred             CCEEEEECChhhCChhhccCccEEEec
Confidence            112222223 24556543 67877654

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=96.85  E-value=0.00029  Score=60.14  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=43.5

Q ss_pred             HhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc----CCCCCCCCCCCC-Cc
Q 027661          139 SEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD----LNLNPKLPFEDN-SF  209 (220)
Q Consensus       139 ~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD----LN~~p~LPFeDn-SF  209 (220)
                      .+++++    |.+|||+|||++.   .+.......+|+|+|.|+..++ +...+..+-+.+    ...+.--+++.+ .|
T Consensus        10 ~~~v~~----g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~   85 (225)
T 3kr9_A           10 ASFVSQ----GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQV   85 (225)
T ss_dssp             HTTSCT----TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCC
T ss_pred             HHhCCC----CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCC
Confidence            455664    8899999999443   3433222368999999999998 344444432221    111111134433 69


Q ss_pred             ceEEEe
Q 027661          210 DVITNV  215 (220)
Q Consensus       210 DaVtcs  215 (220)
                      |+|+++
T Consensus        86 D~Ivia   91 (225)
T 3kr9_A           86 SVITIA   91 (225)
T ss_dssp             CEEEEE
T ss_pred             CEEEEc
Confidence            988764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=96.81  E-value=0.00029  Score=61.96  Aligned_cols=60  Identities=10%  Similarity=0.145  Sum_probs=36.9

Q ss_pred             CCCCeEeeeccc------hhh-ccCCCCC-CCcEEEecCCHHHHhhCcCcchh-hhccCCCCCCCCCCCCCcceEEEe
Q 027661          147 TPGVSILDLCSS------WVS-HFPPGYK-QDRIVGMGMNEEELKRNPVLTEY-VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccS------WvS-HLP~~v~-~~~VVGLGmN~eELaaN~rL~~~-~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++|.+|||||||      .++ .+...++ .++|+|+|++++ +. |  + ++ ...|+.   ++|++ ++||+|+|.
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v~-~--v-~~~i~gD~~---~~~~~-~~fD~Vvsn  130 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-VS-D--A-DSTLIGDCA---TVHTA-NKWDLIISD  130 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-BC-S--S-SEEEESCGG---GCCCS-SCEEEEEEC
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-CC-C--C-EEEEECccc---cCCcc-CcccEEEEc
Confidence            369999999993      232 2222233 369999999988 31 1  1 12 223332   34554 789999984

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=96.81  E-value=0.00035  Score=61.65  Aligned_cols=65  Identities=20%  Similarity=0.101  Sum_probs=41.5

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCCCCCC-CCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNPKLPF-EDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p~LPF-eDnSFDaVtcs  215 (220)
                      +|.+||||| |.+..   +...-..++|+|+|+++++++. +.++...       ...|+..  .||. .+++||+|++.
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~--~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRK--PLPDYALHKFDTFITD  248 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTS--CCCTTTSSCBSEEEEC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhh--hchhhccCCccEEEEC
Confidence            488999999 94432   3221112699999999999983 4444322       2233322  2664 57899999985

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=96.81  E-value=0.0015  Score=58.64  Aligned_cols=78  Identities=18%  Similarity=0.157  Sum_probs=49.8

Q ss_pred             HHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh------hhccCCCCCCC
Q 027661          133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY------VVQDLNLNPKL  202 (220)
Q Consensus       133 ~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~------~VqDLN~~p~L  202 (220)
                      .|..+|...+...+. -.+||||+|||+--   +-......+|+|+|+|+.+|+. +..+...      .+.|+    .+
T Consensus       118 ~lD~fY~~i~~~i~~-p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~----~~  192 (281)
T 3lcv_B          118 HLDEFYRELFRHLPR-PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADL----LE  192 (281)
T ss_dssp             GHHHHHHHHGGGSCC-CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCT----TT
T ss_pred             hHHHHHHHHHhccCC-CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeee----cc
Confidence            345778866553222 45999999997754   2222234799999999999994 6666442      12222    22


Q ss_pred             CCCCCCcceEEEe
Q 027661          203 PFEDNSFDVITNV  215 (220)
Q Consensus       203 PFeDnSFDaVtcs  215 (220)
                      +-....||+|+..
T Consensus       193 ~~p~~~~DvaL~l  205 (281)
T 3lcv_B          193 DRLDEPADVTLLL  205 (281)
T ss_dssp             SCCCSCCSEEEET
T ss_pred             cCCCCCcchHHHH
Confidence            2345779998754

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=96.80  E-value=0.0003  Score=58.12  Aligned_cols=64  Identities=6%  Similarity=0.123  Sum_probs=41.4

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-hhccCCCC-CCCCCCC-CCcceEEE
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-VVQDLNLN-PKLPFED-NSFDVITN  214 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-~VqDLN~~-p~LPFeD-nSFDaVtc  214 (220)
                      +|.+|||+|||++..   +.+.  ..+|+|+|+++++++. +.++... -++-++.+ .++|+++ ++| .|++
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f-~vv~   99 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY-KIVG   99 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE-EEEE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc-EEEE
Confidence            488999999997665   3332  2699999999999983 5544311 12222333 3567774 789 5554

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.80  E-value=0.00049  Score=55.88  Aligned_cols=87  Identities=13%  Similarity=0.024  Sum_probs=49.9

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHHhh-CcCcchh--------
Q 027661          125 HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKR-NPVLTEY--------  191 (220)
Q Consensus       125 HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eELaa-N~rL~~~--------  191 (220)
                      .+.....+.|..+-. ..     ++.+|||+|||.+..   +...++ .++|+|+|.+++.++. +..+...        
T Consensus        43 ~~~~~~~~~l~~l~~-~~-----~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~  116 (239)
T 2hnk_A           43 QISPEEGQFLNILTK-IS-----GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFL  116 (239)
T ss_dssp             SCCHHHHHHHHHHHH-HH-----TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred             ccCHHHHHHHHHHHH-hh-----CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEE
Confidence            345555555554432 22     267999999995432   322222 3699999999999873 4433221        


Q ss_pred             hhccCC------------CCCCCCCCC--CCcceEEEeee
Q 027661          192 VVQDLN------------LNPKLPFED--NSFDVITNVCK  217 (220)
Q Consensus       192 ~VqDLN------------~~p~LPFeD--nSFDaVtcsvS  217 (220)
                      ...|..            ..+.-.|++  ++||+|++...
T Consensus       117 ~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~  156 (239)
T 2hnk_A          117 KLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD  156 (239)
T ss_dssp             EESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC
T ss_pred             EECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCC
Confidence            111111            011223666  89999998754

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=96.75  E-value=0.00049  Score=59.15  Aligned_cols=65  Identities=14%  Similarity=0.025  Sum_probs=40.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--------hhhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--------YVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--------~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||+|||.+..   +.+.....+++|+|+ +++++. +.++.+        +...|+..  .+|  + .||+|+|.
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~--~-~~D~v~~~  255 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK--PLP--V-TADVVLLS  255 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS--CCS--C-CEEEEEEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC--cCC--C-CCCEEEEe
Confidence            478999999995543   333222359999999 998883 443322        12233332  244  3 39999997


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      ..+
T Consensus       256 ~vl  258 (374)
T 1qzz_A          256 FVL  258 (374)
T ss_dssp             SCG
T ss_pred             ccc
Confidence            643

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=96.75  E-value=0.002  Score=56.97  Aligned_cols=76  Identities=16%  Similarity=0.177  Sum_probs=49.7

Q ss_pred             HHHHHHHhhCCCCCCCCCeEeeeccchhhc-cCCCCCCCcEEEecCCHHHHhh-CcCcchh------hhccCCCCCCCCC
Q 027661          133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKR-NPVLTEY------VVQDLNLNPKLPF  204 (220)
Q Consensus       133 ~LT~lY~~~lp~~~~pG~~VLDLccSWvSH-LP~~v~~~~VVGLGmN~eELaa-N~rL~~~------~VqDLN~~p~LPF  204 (220)
                      .|..+|+..+.-  .+..+||||+||...- +|-- ...+|+|.|+++.+++. +..+...      .+.|+   +..|+
T Consensus        92 ~ld~fY~~i~~~--~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~---~~~~~  165 (253)
T 3frh_A           92 ELDTLYDFIFSA--ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDV---LCAPP  165 (253)
T ss_dssp             GHHHHHHHHTSS--CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCT---TTSCC
T ss_pred             hHHHHHHHHhcC--CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeec---ccCCC
Confidence            456788888875  3467999999992221 1100 33699999999999994 6665442      22222   33455


Q ss_pred             CCCCcceEEEe
Q 027661          205 EDNSFDVITNV  215 (220)
Q Consensus       205 eDnSFDaVtcs  215 (220)
                      ++ +||+|+..
T Consensus       166 ~~-~~DvvLll  175 (253)
T 3frh_A          166 AE-AGDLALIF  175 (253)
T ss_dssp             CC-BCSEEEEE
T ss_pred             CC-CcchHHHH
Confidence            55 89999864

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=96.72  E-value=0.0011  Score=57.55  Aligned_cols=68  Identities=13%  Similarity=0.026  Sum_probs=40.4

Q ss_pred             CCCeEeeeccchhhc-------cCCCCC-CCcEEEecCCHHHHh-hCcCcchhh--hccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH-------FPPGYK-QDRIVGMGMNEEELK-RNPVLTEYV--VQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH-------LP~~v~-~~~VVGLGmN~eELa-aN~rL~~~~--VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||+|||.+..       +++..+ ..+|+|.|+|++.++ +...+...-  +.-.+.+.--+..+..||+|++.
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N  208 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  208 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence            478999999996554       332100 158999999999887 333222110  11111122124457899999985

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.68  E-value=0.00037  Score=60.11  Aligned_cols=68  Identities=9%  Similarity=-0.004  Sum_probs=41.6

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchh---h----hccCCCC-CCCCC--CCCCcceEEE
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEY---V----VQDLNLN-PKLPF--EDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~---~----VqDLN~~-p~LPF--eDnSFDaVtc  214 (220)
                      +.+|||||||.+.   ++.+..+..+|+|+|+++++++. +..+...   .    ++-...+ .++++  .+++||+|++
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~  175 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVII  175 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEE
Confidence            6799999999443   33332233699999999999983 5444221   0    1111111 12233  4899999998


Q ss_pred             ee
Q 027661          215 VC  216 (220)
Q Consensus       215 sv  216 (220)
                      ..
T Consensus       176 d~  177 (304)
T 3bwc_A          176 DT  177 (304)
T ss_dssp             EC
T ss_pred             CC
Confidence            54

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=96.67  E-value=0.00046  Score=58.85  Aligned_cols=65  Identities=6%  Similarity=-0.072  Sum_probs=41.9

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--------hhhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--------YVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--------~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||+|||.+..   +.+.....+++|+|+ +++++. +.++.+        +...|+.    .|+++ +||+|+|.
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~----~~~p~-~~D~v~~~  242 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF----DPLPA-GAGGYVLS  242 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT----SCCCC-SCSEEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC----CCCCC-CCcEEEEe
Confidence            467999999995543   333233358999999 988883 443332        1223433    34555 89999997


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      ..+
T Consensus       243 ~vl  245 (332)
T 3i53_A          243 AVL  245 (332)
T ss_dssp             SCG
T ss_pred             hhh
Confidence            643

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.66  E-value=0.002  Score=55.06  Aligned_cols=61  Identities=8%  Similarity=0.095  Sum_probs=41.8

Q ss_pred             CccCC--CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcc
Q 027661          121 RFVTH--IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLT  189 (220)
Q Consensus       121 RfVtH--IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~  189 (220)
                      +|..|  +|...++.+.+.-.  +    ++|.+|||||||++..   |.+..  .+|+|+|+++++++. +.++.
T Consensus         6 ~~GQnFL~d~~i~~~iv~~~~--~----~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~   72 (255)
T 3tqs_A            6 RFGQHFLHDSFVLQKIVSAIH--P----QKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYN   72 (255)
T ss_dssp             ---CCEECCHHHHHHHHHHHC--C----CTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHT
T ss_pred             cCCcccccCHHHHHHHHHhcC--C----CCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHh
Confidence            44444  58888887765532  2    2488999999996654   55532  699999999999983 44443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=96.64  E-value=0.0013  Score=56.81  Aligned_cols=63  Identities=11%  Similarity=0.034  Sum_probs=40.2

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCcCcch--hhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTE--YVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      +.+|||+|||.+..   +.+.....+|+|+|+ +++++.-+++..  +...|+..    |+++  ||+|+|...+
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~----~~p~--~D~v~~~~~l  256 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFT----SIPN--ADAVLLKYIL  256 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTT----CCCC--CSEEEEESCG
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccC----CCCC--ccEEEeehhh
Confidence            67999999995554   332222348999999 998885333322  23344432    3443  9999997654

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=96.63  E-value=0.00013  Score=62.29  Aligned_cols=77  Identities=10%  Similarity=0.120  Sum_probs=46.2

Q ss_pred             HHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCH-------HHHhh---CcCcchh--hhccCCCC
Q 027661          135 TKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNE-------EELKR---NPVLTEY--VVQDLNLN  199 (220)
Q Consensus       135 T~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~-------eELaa---N~rL~~~--~VqDLN~~  199 (220)
                      ++++.+.+..  .+|.+|||++||.+..   +...  .++|+|+|+|+       ++++.   |.++...  .++-++.+
T Consensus        72 ~~~l~~a~~~--~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d  147 (258)
T 2r6z_A           72 GELIAKAVNH--TAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGN  147 (258)
T ss_dssp             -CHHHHHTTG--GGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESC
T ss_pred             hHHHHHHhCc--CCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECC
Confidence            4555665532  3478999999996654   4432  36999999999       88873   4332221  01112222


Q ss_pred             C--CCC-CCC--CCcceEEEe
Q 027661          200 P--KLP-FED--NSFDVITNV  215 (220)
Q Consensus       200 p--~LP-FeD--nSFDaVtcs  215 (220)
                      .  -|| +++  ++||+|++-
T Consensus       148 ~~~~l~~~~~~~~~fD~V~~d  168 (258)
T 2r6z_A          148 AAEQMPALVKTQGKPDIVYLD  168 (258)
T ss_dssp             HHHHHHHHHHHHCCCSEEEEC
T ss_pred             HHHHHHhhhccCCCccEEEEC
Confidence            1  133 555  899999983

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=96.59  E-value=0.00022  Score=65.92  Aligned_cols=76  Identities=18%  Similarity=0.146  Sum_probs=46.8

Q ss_pred             HHHHHHHh-hCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh--h---hccCCCCC--
Q 027661          133 ALTKYYSE-VFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY--V---VQDLNLNP--  200 (220)
Q Consensus       133 ~LT~lY~~-~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~--~---VqDLN~~p--  200 (220)
                      ..++.|+. ++.    +|.+|||||||.+..   +...  ..+|+|+|.|+++++ ++..+...  -   ++-++.+.  
T Consensus        81 e~vA~~~a~~l~----~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~  154 (410)
T 3ll7_A           81 AVTSSYKSRFIR----EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKE  154 (410)
T ss_dssp             HHHHHHGGGGSC----TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGG
T ss_pred             HHHHHHHHHhcC----CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHH
Confidence            34555554 453    388999999995544   5443  369999999999999 34443322  1   11122221  


Q ss_pred             CCCC-CCCCcceEEE
Q 027661          201 KLPF-EDNSFDVITN  214 (220)
Q Consensus       201 ~LPF-eDnSFDaVtc  214 (220)
                      -|+. ++++||+|++
T Consensus       155 ~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A          155 YLPLIKTFHPDYIYV  169 (410)
T ss_dssp             SHHHHHHHCCSEEEE
T ss_pred             hhhhccCCCceEEEE
Confidence            1332 4578999987

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=96.58  E-value=0.002  Score=56.41  Aligned_cols=65  Identities=14%  Similarity=0.002  Sum_probs=42.2

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||+|||.+..   +.+.....+++|+|+ +++++. +.++.+.        ...|+.    .|+++ +||+|+|.
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~----~~~p~-~~D~v~~~  275 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF----ETIPD-GADVYLIK  275 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT----TCCCS-SCSEEEEE
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC----CCCCC-CceEEEhh
Confidence            478999999995443   333233358999999 888873 4443321        223333    46666 89999997


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      ..+
T Consensus       276 ~vl  278 (369)
T 3gwz_A          276 HVL  278 (369)
T ss_dssp             SCG
T ss_pred             hhh
Confidence            643

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=96.57  E-value=0.002  Score=55.43  Aligned_cols=68  Identities=12%  Similarity=-0.008  Sum_probs=42.3

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchh---h----hccCCCCC--CCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY---V----VQDLNLNP--KLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~---~----VqDLN~~p--~LPFeDnSFDaVtcs  215 (220)
                      +.+|||||||.+   .++.+..+..+|+|+|+++++++. +..+...   .    ++-...+.  -++..+++||+|++.
T Consensus        91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d  170 (296)
T 1inl_A           91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  170 (296)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence            579999999933   344443334799999999999983 4444321   0    11111111  245567899999984


Q ss_pred             e
Q 027661          216 C  216 (220)
Q Consensus       216 v  216 (220)
                      .
T Consensus       171 ~  171 (296)
T 1inl_A          171 S  171 (296)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.57  E-value=0.001  Score=52.89  Aligned_cols=68  Identities=15%  Similarity=0.106  Sum_probs=41.1

Q ss_pred             CCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhh--------ccCCCC-CCCCCCC--CCcceE
Q 027661          149 GVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVV--------QDLNLN-PKLPFED--NSFDVI  212 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~V--------qDLN~~-p~LPFeD--nSFDaV  212 (220)
                      +.+|||+|||.+   .++...+. .++|+|+|.|+++++. +..+...-.        .|.... +.++.++  ++||+|
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v  149 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA  149 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence            679999999943   34444433 3699999999999883 444432211        111100 1232222  789999


Q ss_pred             EEee
Q 027661          213 TNVC  216 (220)
Q Consensus       213 tcsv  216 (220)
                      +|..
T Consensus       150 ~~d~  153 (229)
T 2avd_A          150 VVDA  153 (229)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9854

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=96.51  E-value=0.0084  Score=50.74  Aligned_cols=61  Identities=7%  Similarity=0.196  Sum_probs=40.7

Q ss_pred             CCccCC--CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcC
Q 027661          120 PRFVTH--IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPV  187 (220)
Q Consensus       120 PRfVtH--IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~r  187 (220)
                      .+|..|  +|...++++-+.    +..  .+|.+|||+|||.+..   |.+. +..+|+|+|+++++++. +.+
T Consensus         7 k~~GQnfl~d~~i~~~iv~~----~~~--~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A            7 KSFGQHLLVSEGVLKKIAEE----LNI--EEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             -CCCSSCEECHHHHHHHHHH----TTC--CTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS
T ss_pred             CcccccccCCHHHHHHHHHh----cCC--CCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc
Confidence            344443  477777766543    322  2488999999996544   5543 24799999999999984 444

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=96.49  E-value=0.00045  Score=61.71  Aligned_cols=44  Identities=11%  Similarity=0.064  Sum_probs=31.6

Q ss_pred             HHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh
Q 027661          135 TKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       135 T~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa  183 (220)
                      .++|.+.+.    +|.+|||||||.+.   ++... +..+|+|+|+|+++++
T Consensus       203 ~~~~~~~~~----~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~  249 (385)
T 2b78_A          203 RNELINGSA----AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRA  249 (385)
T ss_dssp             HHHHHHTTT----BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHH
T ss_pred             HHHHHHHhc----CCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHH
Confidence            345666653    37899999999544   34431 3358999999999988

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=96.49  E-value=0.0022  Score=53.42  Aligned_cols=77  Identities=13%  Similarity=0.153  Sum_probs=46.7

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-hhccCCCC-
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-VVQDLNLN-  199 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-~VqDLN~~-  199 (220)
                      +|...++.+.+.    +..  .+|.+|||+|||.+..   +.+..  .+|+|+|+++++++. +.++... -++-++.+ 
T Consensus        14 ~d~~~~~~i~~~----~~~--~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~   85 (244)
T 1qam_A           14 TSKHNIDKIMTN----IRL--NEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDI   85 (244)
T ss_dssp             CCHHHHHHHHTT----CCC--CTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCG
T ss_pred             CCHHHHHHHHHh----CCC--CCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChH
Confidence            577776666433    322  3588999999996554   43322  699999999999983 4444321 11222222 


Q ss_pred             CCCCCCC-CCcc
Q 027661          200 PKLPFED-NSFD  210 (220)
Q Consensus       200 p~LPFeD-nSFD  210 (220)
                      .++|+++ .+|+
T Consensus        86 ~~~~~~~~~~~~   97 (244)
T 1qam_A           86 LQFKFPKNQSYK   97 (244)
T ss_dssp             GGCCCCSSCCCE
T ss_pred             HhCCcccCCCeE
Confidence            3667764 4564

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=96.44  E-value=0.00089  Score=57.80  Aligned_cols=65  Identities=9%  Similarity=0.061  Sum_probs=41.4

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||+|||.+..   +.+.....+|+|+|+ +++++. +.++.+.        ...|+.   ++|+++.  |+|+|.
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~~~--D~v~~~  263 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIY---KESYPEA--DAVLFC  263 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTT---TSCCCCC--SEEEEE
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccc---cCCCCCC--CEEEEe
Confidence            478999999995443   333222359999999 888873 4443322        122332   3477765  999997


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      ..+
T Consensus       264 ~vl  266 (359)
T 1x19_A          264 RIL  266 (359)
T ss_dssp             SCG
T ss_pred             chh
Confidence            654

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.43  E-value=0.00033  Score=62.03  Aligned_cols=74  Identities=16%  Similarity=0.212  Sum_probs=43.8

Q ss_pred             HHHHhhCCCCCCCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCC-CCC
Q 027661          136 KYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLN-PKL  202 (220)
Q Consensus       136 ~lY~~~lp~~~~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~-p~L  202 (220)
                      +..++++.    +|.+|||+|||.+   .++... +..+|+|+|+|++.++. +..+...        ...|.... +.+
T Consensus       209 ~~~~~~~~----~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~  283 (396)
T 2as0_A          209 LALEKWVQ----PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKL  283 (396)
T ss_dssp             HHHGGGCC----TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHhh----CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHH
Confidence            33445552    3789999999944   445443 34699999999999872 3322211        11121111 122


Q ss_pred             CCCCCCcceEEE
Q 027661          203 PFEDNSFDVITN  214 (220)
Q Consensus       203 PFeDnSFDaVtc  214 (220)
                      +-++++||+|++
T Consensus       284 ~~~~~~fD~Vi~  295 (396)
T 2as0_A          284 QKKGEKFDIVVL  295 (396)
T ss_dssp             HHTTCCEEEEEE
T ss_pred             HhhCCCCCEEEE
Confidence            224789999998

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.41  E-value=0.0035  Score=55.95  Aligned_cols=86  Identities=9%  Similarity=0.063  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCcCcch----hhhccCCCCC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTE----YVVQDLNLNP  200 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~rL~~----~~VqDLN~~p  200 (220)
                      ..|.-.|.++-.+.+-   ++|.+|||||||++.+   ..+..+-..|+|+++..+ |...|....    -+++-....-
T Consensus        57 SRaA~KL~ei~ek~~l---~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvD-l~~~pi~~~~~g~~ii~~~~~~d  132 (277)
T 3evf_A           57 SRGTAKLRWFHERGYV---KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRD-GHEKPMNVQSLGWNIITFKDKTD  132 (277)
T ss_dssp             STHHHHHHHHHHTTSS---CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT-TCCCCCCCCBTTGGGEEEECSCC
T ss_pred             ccHHHHHHHHHHhCCC---CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEecc-CcccccccCcCCCCeEEEeccce
Confidence            3466677777777544   3688999999996555   223222246777777633 332333321    1111111101


Q ss_pred             CCCCCCCCcceEEEeee
Q 027661          201 KLPFEDNSFDVITNVCK  217 (220)
Q Consensus       201 ~LPFeDnSFDaVtcsvS  217 (220)
                      ..+|+++.||.|+|-.+
T Consensus       133 v~~l~~~~~DlVlsD~a  149 (277)
T 3evf_A          133 IHRLEPVKCDTLLCDIG  149 (277)
T ss_dssp             TTTSCCCCCSEEEECCC
T ss_pred             ehhcCCCCccEEEecCc
Confidence            24677899999999764

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.41  E-value=0.0023  Score=56.06  Aligned_cols=68  Identities=13%  Similarity=-0.000  Sum_probs=41.9

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchh--h-----hccCCCCC--CCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY--V-----VQDLNLNP--KLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~--~-----VqDLN~~p--~LPFeDnSFDaVtcs  215 (220)
                      +.+|||||||.+   .++.+..+..+|+|+|+++++++. +..+..+  .     ++-...+.  -++..+++||+|++.
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d  196 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD  196 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence            579999999943   334433234699999999999983 4444331  0     11111111  134457899999985


Q ss_pred             e
Q 027661          216 C  216 (220)
Q Consensus       216 v  216 (220)
                      .
T Consensus       197 ~  197 (321)
T 2pt6_A          197 S  197 (321)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.41  E-value=0.0025  Score=55.32  Aligned_cols=68  Identities=12%  Similarity=0.063  Sum_probs=42.7

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCC--CCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNP--KLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p--~LPFeDnSFDaVtcs  215 (220)
                      +.+|||||||.+.   ++.+..+..+|+|+|+++++++. +..+...       .++-.+.+.  -|+..+++||+|+|-
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d  175 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD  175 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEEC
Confidence            6799999999433   34332233699999999999983 5444321       011111111  245567899999985


Q ss_pred             e
Q 027661          216 C  216 (220)
Q Consensus       216 v  216 (220)
                      .
T Consensus       176 ~  176 (304)
T 2o07_A          176 S  176 (304)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=96.41  E-value=0.0032  Score=57.51  Aligned_cols=61  Identities=20%  Similarity=0.188  Sum_probs=39.4

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcc------hhhhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLT------EYVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~------~~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+||||+||.+.   ++.+.  ..+|+|+|.|+++++. +.++.      ++...|....   + ++ +||+|++-
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~---~-~~-~fD~Vv~d  360 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREV---S-VK-GFDTVIVD  360 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTC---C-CT-TCSEEEEC
T ss_pred             CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHc---C-cc-CCCEEEEc
Confidence            37899999999554   35443  3599999999999983 33332      2233343332   1 12 89999973

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=96.39  E-value=0.0019  Score=56.09  Aligned_cols=68  Identities=10%  Similarity=0.026  Sum_probs=42.7

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCC--CCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNP--KLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p--~LPFeDnSFDaVtc  214 (220)
                      +.+|||||||.+   .++.+..+..+|+|+|+++++++. +..+.+.        .++-.+.+.  -++..+++||+|++
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII  157 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence            579999999943   334433234699999999999983 5444321        011111111  14556889999998


Q ss_pred             ee
Q 027661          215 VC  216 (220)
Q Consensus       215 sv  216 (220)
                      ..
T Consensus       158 d~  159 (314)
T 1uir_A          158 DL  159 (314)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.38  E-value=0.00046  Score=62.63  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=26.6

Q ss_pred             CCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh
Q 027661          148 PGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa  183 (220)
                      ||.+|||+|||   +..++...  ..+|+|+|+|+++|+
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~  250 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALG  250 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHH
T ss_pred             CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHH
Confidence            48999999999   44455442  235999999999998

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.36  E-value=0.00095  Score=61.92  Aligned_cols=62  Identities=8%  Similarity=0.098  Sum_probs=39.2

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh--------hhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||||||++..   +.+ .+..+|+|+|+|+ +++ ++.++...        ...|+.   +++++ ++||+|+|.
T Consensus       158 ~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~---~~~~~-~~fD~Ivs~  231 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVE---EVSLP-EQVDIIISE  231 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTT---TCCCS-SCEEEEECC
T ss_pred             CCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchh---hCccC-CCeEEEEEe
Confidence            478999999997654   322 2335999999998 765 23332221        112222   34554 589999985

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.34  E-value=0.00032  Score=58.35  Aligned_cols=86  Identities=13%  Similarity=0.079  Sum_probs=49.5

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccch---hhccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhc----c
Q 027661          125 HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSW---VSHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQ----D  195 (220)
Q Consensus       125 HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSW---vSHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~Vq----D  195 (220)
                      .+.+...+.|..+-. ..+     +.+|||||||.   ..++.+.+. .++|+|+|+|+++++. +.++...-+.    -
T Consensus        43 ~i~~~~~~~l~~l~~-~~~-----~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~  116 (242)
T 3r3h_A           43 QVAPEQAQFMQMLIR-LTR-----AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKL  116 (242)
T ss_dssp             SCCHHHHHHHHHHHH-HHT-----CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEE
T ss_pred             ccCHHHHHHHHHHHh-hcC-----cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEE
Confidence            355555555544332 333     56999999993   344444443 3799999999998873 4444332111    1


Q ss_pred             CCCCC--CCCC-----CCCCcceEEEee
Q 027661          196 LNLNP--KLPF-----EDNSFDVITNVC  216 (220)
Q Consensus       196 LN~~p--~LPF-----eDnSFDaVtcsv  216 (220)
                      +..+.  .+|.     ++++||.|+|..
T Consensus       117 ~~gda~~~l~~~~~~~~~~~fD~V~~d~  144 (242)
T 3r3h_A          117 RLGPALDTLHSLLNEGGEHQFDFIFIDA  144 (242)
T ss_dssp             EESCHHHHHHHHHHHHCSSCEEEEEEES
T ss_pred             EEcCHHHHHHHHhhccCCCCEeEEEEcC
Confidence            11111  1232     268999999864

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=96.34  E-value=0.0022  Score=55.83  Aligned_cols=64  Identities=11%  Similarity=0.077  Sum_probs=40.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCcCcch--hhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTE--YVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||.+..   +.+.....+++|+|+ +++++.-.++..  +...|+..    |+++  ||+|+|...+
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~----~~~~--~D~v~~~~~l  277 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFA----SVPQ--GDAMILKAVC  277 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT----CCCC--EEEEEEESSG
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCccc----CCCC--CCEEEEeccc
Confidence            378999999995544   333233358999999 888885322221  22344433    4555  9999997654

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.32  E-value=0.0018  Score=55.14  Aligned_cols=39  Identities=8%  Similarity=0.096  Sum_probs=29.2

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCc
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVL  188 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL  188 (220)
                      +.+|||||||.+   .++... +..+|+|+|+++++++. +..+
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~  118 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI  118 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT
T ss_pred             CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH
Confidence            679999999943   445443 44799999999999983 4444

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=96.30  E-value=0.00099  Score=57.11  Aligned_cols=65  Identities=14%  Similarity=0.060  Sum_probs=39.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--------hhhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--------YVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--------~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||+|||.+..   +.+.....+++|+|+ +++++. +.++..        +...|+..    ++++ .||+|+|.
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~-~~D~v~~~  256 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE----PLPR-KADAIILS  256 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS----CCSS-CEEEEEEE
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC----CCCC-CccEEEEc
Confidence            478999999995543   322222348999999 887773 433322        22234332    3333 39999997


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      ..+
T Consensus       257 ~vl  259 (360)
T 1tw3_A          257 FVL  259 (360)
T ss_dssp             SCG
T ss_pred             ccc
Confidence            643

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=96.29  E-value=0.0016  Score=56.64  Aligned_cols=62  Identities=21%  Similarity=0.311  Sum_probs=38.4

Q ss_pred             CCCeEeeeccchhhc---cCCCC-CCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCCCCCCCcceEEE
Q 027661          148 PGVSILDLCSSWVSH---FPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v-~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LPFeDnSFDaVtc  214 (220)
                      ++.+|||+|||.+..   +.+.. ...+|+|+|+++++++.-++++ ....|+-.   . ..+++||+|+|
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~-~~~~D~~~---~-~~~~~fD~Ii~  104 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAE-GILADFLL---W-EPGEAFDLILG  104 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEE-EEESCGGG---C-CCSSCEEEEEE
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCc-EEeCChhh---c-CccCCCCEEEE
Confidence            366999999996654   22211 2359999999999987422221 11222211   1 23578999998

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=96.28  E-value=0.0013  Score=54.81  Aligned_cols=84  Identities=15%  Similarity=0.131  Sum_probs=48.9

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh-------hccCCCCCCCcEEEecCCHHHHhh-CcCcchhhh--
Q 027661          124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV-------SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV--  193 (220)
Q Consensus       124 tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv-------SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V--  193 (220)
                      ..+.....+-|..+- ...+     +.+|||||||.+       .++|++   ++|+|+|.|+++++. ++.+.+.-+  
T Consensus        61 ~~~~~~~~~ll~~l~-~~~~-----~~~VLeiG~G~G~~~~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~g~~~  131 (247)
T 1sui_A           61 MTTSADEGQFLSMLL-KLIN-----AKNTMEIGVYTGYSLLATALAIPED---GKILAMDINKENYELGLPVIKKAGVDH  131 (247)
T ss_dssp             GSCCHHHHHHHHHHH-HHTT-----CCEEEEECCGGGHHHHHHHHHSCTT---CEEEEEESCCHHHHHHHHHHHHTTCGG
T ss_pred             CCcCHHHHHHHHHHH-HhhC-----cCEEEEeCCCcCHHHHHHHHhCCCC---CEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            334555544444433 2333     569999999943       235543   699999999999983 554443211  


Q ss_pred             --ccCCCCC--CCCC------CCCCcceEEEee
Q 027661          194 --QDLNLNP--KLPF------EDNSFDVITNVC  216 (220)
Q Consensus       194 --qDLN~~p--~LPF------eDnSFDaVtcsv  216 (220)
                        .-+..+.  .+|.      ++++||.|+|..
T Consensus       132 ~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~  164 (247)
T 1sui_A          132 KIDFREGPALPVLDEMIKDEKNHGSYDFIFVDA  164 (247)
T ss_dssp             GEEEEESCHHHHHHHHHHSGGGTTCBSEEEECS
T ss_pred             CeEEEECCHHHHHHHHHhccCCCCCEEEEEEcC
Confidence              1111111  1232      268999999854

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=96.27  E-value=0.0015  Score=59.52  Aligned_cols=69  Identities=16%  Similarity=0.065  Sum_probs=36.8

Q ss_pred             CCccc-CcCCCCccCCCCHHHHHHHHHHHHhhCCCCC--CCCCeEeeeccchhhc--cCCCCCCCcEEEecCCH
Q 027661          111 SPDSL-FYETPRFVTHIDDPAIAALTKYYSEVFPPSN--TPGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNE  179 (220)
Q Consensus       111 sdD~~-FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~--~pG~~VLDLccSWvSH--LP~~v~~~~VVGLGmN~  179 (220)
                      +.|.. |-++-.|-.|..-=-=..=|+.|++.|-..-  .+|..|||||||++.-  +....+..+|+|+|.|+
T Consensus        43 ~~d~~Yf~sY~~~~iH~~ML~D~~Rt~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~  116 (376)
T 4hc4_A           43 ERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA  116 (376)
T ss_dssp             ------CCCHHHHHHHHHHHHCHHHHHHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST
T ss_pred             cchhhhhhhccCcHHHHHHhCCHHHHHHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH
Confidence            34443 3345555555421111122355776663211  2488999999996543  43334556999999984

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.23  E-value=0.0021  Score=57.02  Aligned_cols=68  Identities=9%  Similarity=-0.002  Sum_probs=41.9

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCC--CCC-CCCCCcceEEE
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNP--KLP-FEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p--~LP-FeDnSFDaVtc  214 (220)
                      +.+|||||||.+   ..+....+..+|+|+|+++++++. +..+...       .++-++.+.  -++ +++++||+|+|
T Consensus       121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~  200 (334)
T 1xj5_A          121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV  200 (334)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEE
Confidence            579999999943   334443234699999999999983 5444321       011111111  122 35789999998


Q ss_pred             ee
Q 027661          215 VC  216 (220)
Q Consensus       215 sv  216 (220)
                      ..
T Consensus       201 d~  202 (334)
T 1xj5_A          201 DS  202 (334)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=96.21  E-value=0.0016  Score=57.32  Aligned_cols=65  Identities=8%  Similarity=0.081  Sum_probs=39.2

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchhh-----hccCCCCC-C-CC---CCCCCcceEE
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEYV-----VQDLNLNP-K-LP---FEDNSFDVIT  213 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~-----VqDLN~~p-~-LP---FeDnSFDaVt  213 (220)
                      +|.+|||||||.+.   ++... + .+|+|+|+|+++++ ++.++...-     +.-++.+. + ++   -++++||+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~-g-a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAA-G-AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT-T-CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHc-C-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            37899999999544   34332 2 39999999999998 333332211     11112221 1 11   1267999999


Q ss_pred             E
Q 027661          214 N  214 (220)
Q Consensus       214 c  214 (220)
                      |
T Consensus       231 ~  231 (332)
T 2igt_A          231 T  231 (332)
T ss_dssp             E
T ss_pred             E
Confidence            8

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=96.20  E-value=0.0023  Score=55.25  Aligned_cols=63  Identities=13%  Similarity=-0.089  Sum_probs=37.8

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCcCcch--------hhhccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTE--------YVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~rL~~--------~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      ++.+|||+|||.+..   +.+.....+++|+|+. +++. +.++..        +...|+.    .|++  +||+|+|..
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~-~~~~~~~~~~~~v~~~~~d~~----~~~p--~~D~v~~~~  255 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA-RHRLDAPDVAGRWKVVEGDFL----REVP--HADVHVLKR  255 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT-TCCCCCGGGTTSEEEEECCTT----TCCC--CCSEEEEES
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh-cccccccCCCCCeEEEecCCC----CCCC--CCcEEEEeh
Confidence            478999999995443   3332233489999994 4444 333221        1223333    2344  899999976


Q ss_pred             ee
Q 027661          217 KT  218 (220)
Q Consensus       217 SV  218 (220)
                      .+
T Consensus       256 vl  257 (348)
T 3lst_A          256 IL  257 (348)
T ss_dssp             CG
T ss_pred             hc
Confidence            54

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.20  E-value=0.0018  Score=55.17  Aligned_cols=67  Identities=10%  Similarity=0.027  Sum_probs=41.8

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCC--CCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNP--KLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p--~LPFeDnSFDaVtcs  215 (220)
                      +.+|||||||.+   .++....+..+|+++|+++++++. +..+.++       .++-...+.  -|+..+++||+|++-
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d  155 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD  155 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence            579999999944   334332233699999999999983 5444321       011111111  244457899999984

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.19  E-value=0.0012  Score=56.42  Aligned_cols=68  Identities=13%  Similarity=0.042  Sum_probs=41.1

Q ss_pred             CCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHhh-CcCcchhh-------hccCCCCC--CCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV-------VQDLNLNP--KLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~-------VqDLN~~p--~LPFeDnSFDaVtcs  215 (220)
                      +.+|||||||.   ..++....+..+|+|+|+++++++. +..+...-       ++-...+.  .++..+++||+|++.
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d  158 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD  158 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEc
Confidence            67999999993   3334333233699999999999983 44443210       00011111  133347899999984


Q ss_pred             e
Q 027661          216 C  216 (220)
Q Consensus       216 v  216 (220)
                      .
T Consensus       159 ~  159 (283)
T 2i7c_A          159 S  159 (283)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=96.11  E-value=0.0022  Score=56.08  Aligned_cols=66  Identities=17%  Similarity=0.274  Sum_probs=42.7

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh---hCcCcchh--hhccCCCCC-CCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK---RNPVLTEY--VVQDLNLNP-KLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa---aN~rL~~~--~VqDLN~~p-~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||++||++..   +.. .+..+|++.|+|++.++   .|-+++..  .+.-+|.+. +++ ..+.||.|++.
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~-~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~  199 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAV-YGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMG  199 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHH-HTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred             CCCEEEEecCcCcHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEEC
Confidence            499999999997654   222 12358999999998776   25555432  223344443 233 35789998864

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.09  E-value=0.0025  Score=57.71  Aligned_cols=45  Identities=13%  Similarity=0.170  Sum_probs=27.9

Q ss_pred             CcEEEecCCHHHHh-hCcCcchhhhc----cCCCC-CCCCCCCCCcceEEEe
Q 027661          170 DRIVGMGMNEEELK-RNPVLTEYVVQ----DLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       170 ~~VVGLGmN~eELa-aN~rL~~~~Vq----DLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      .+|+|+|.|+++++ ++..+...-+.    -.+.+ .++|++ .+||+|+|.
T Consensus       264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~N  314 (393)
T 3k0b_A          264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVAN  314 (393)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEEC
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEEC
Confidence            46999999999998 34444332221    11111 245554 499999986

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=96.05  E-value=0.0026  Score=55.59  Aligned_cols=34  Identities=9%  Similarity=0.199  Sum_probs=26.7

Q ss_pred             CCeEeeeccchhhc-cCCCCCCCcEEEecCCHHHHh
Q 027661          149 GVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       149 G~~VLDLccSWvSH-LP~~v~~~~VVGLGmN~eELa  183 (220)
                      |.+||||+||.+.. ++. -+..+|+|+|+|++.++
T Consensus       196 ~~~VLDlg~G~G~~~l~a-~~~~~V~~vD~s~~ai~  230 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIAC-KNAKKIYAIDINPHAIE  230 (336)
T ss_dssp             TCEEEETTCTTSHHHHHT-TTSSEEEEEESCHHHHH
T ss_pred             CCEEEEccCccCHHHHhc-cCCCEEEEEECCHHHHH
Confidence            88999999995544 221 14579999999999988

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.04  E-value=0.0048  Score=54.15  Aligned_cols=68  Identities=13%  Similarity=0.045  Sum_probs=42.5

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchh-------hhccCCCCC--CCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-------VVQDLNLNP--KLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-------~VqDLN~~p--~LPFeDnSFDaVtcs  215 (220)
                      +.+|||||||.+   .++....+..+|+++|+++++++. +..+...       .++-...+.  .|+..+++||+|++.
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d  188 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD  188 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence            569999999943   334433234699999999999983 4444321       011111111  234467899999985


Q ss_pred             e
Q 027661          216 C  216 (220)
Q Consensus       216 v  216 (220)
                      .
T Consensus       189 ~  189 (314)
T 2b2c_A          189 S  189 (314)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.01  E-value=0.0019  Score=62.67  Aligned_cols=65  Identities=18%  Similarity=0.065  Sum_probs=41.1

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh-hCcCcchhh-----hccCCCCC--CCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYV-----VQDLNLNP--KLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~-----VqDLN~~p--~LPFeDnSFDaVtc  214 (220)
                      |.+|||||||.+   .|+.. -+..+|+|+|+|+++|+ ++..+...-     ++-++.+.  -|+..+++||.|+|
T Consensus       540 g~~VLDlg~GtG~~sl~aa~-~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGL-GGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCcEEEeeechhHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence            789999999944   34433 23357999999999998 333322211     11112221  24556789999998

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=95.92  E-value=0.0069  Score=49.74  Aligned_cols=84  Identities=11%  Similarity=0.081  Sum_probs=48.5

Q ss_pred             CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh-------ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhc-
Q 027661          124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS-------HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQ-  194 (220)
Q Consensus       124 tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS-------HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~Vq-  194 (220)
                      ..+.+.....|..+-+ ..+     +.+|||+|||.+.       ++|++   ++|+|+|.|++.++. ++.+.+.-+. 
T Consensus        52 ~~~~~~~~~~l~~l~~-~~~-----~~~VLeiG~G~G~~~~~la~~~~~~---~~v~~iD~~~~~~~~a~~~~~~~g~~~  122 (237)
T 3c3y_A           52 MSTSPLAGQLMSFVLK-LVN-----AKKTIEVGVFTGYSLLLTALSIPDD---GKITAIDFDREAYEIGLPFIRKAGVEH  122 (237)
T ss_dssp             GSCCHHHHHHHHHHHH-HTT-----CCEEEEECCTTSHHHHHHHHHSCTT---CEEEEEESCHHHHHHHHHHHHHTTCGG
T ss_pred             CCcCHHHHHHHHHHHH-hhC-----CCEEEEeCCCCCHHHHHHHHhCCCC---CEEEEEECCHHHHHHHHHHHHHcCCCC
Confidence            3445554444444433 333     5699999999433       35543   699999999999883 5444432111 


Q ss_pred             ---cCCCCC--CCC------CCCCCcceEEEee
Q 027661          195 ---DLNLNP--KLP------FEDNSFDVITNVC  216 (220)
Q Consensus       195 ---DLN~~p--~LP------FeDnSFDaVtcsv  216 (220)
                         -...+.  .+|      +++++||.|++..
T Consensus       123 ~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~  155 (237)
T 3c3y_A          123 KINFIESDAMLALDNLLQGQESEGSYDFGFVDA  155 (237)
T ss_dssp             GEEEEESCHHHHHHHHHHSTTCTTCEEEEEECS
T ss_pred             cEEEEEcCHHHHHHHHHhccCCCCCcCEEEECC
Confidence               111111  122      1368999999753

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=95.92  E-value=0.0013  Score=58.42  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=26.9

Q ss_pred             CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHh
Q 027661          149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELa  183 (220)
                      |.+|||||||   +..++... +..+|+|+|+|++.++
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~-g~~~V~~vD~s~~al~  257 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALD  257 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHT-TCSEEEEEESCHHHHH
T ss_pred             CCeEEEeeccCCHHHHHHHHC-CCCEEEEEECCHHHHH
Confidence            7899999999   44455442 2469999999999987

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=95.87  E-value=0.0081  Score=53.80  Aligned_cols=84  Identities=10%  Similarity=0.057  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCcCc----chhhhccCCCC-C
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL----TEYVVQDLNLN-P  200 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~rL----~~~~VqDLN~~-p  200 (220)
                      .|.-+|.++-.+.+-   +||.+|||||||.+.+   ..+..+-..|+|+|+...+ ...|..    ..-++ .+... .
T Consensus        74 RAAfKL~ei~eK~~L---k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~-~~~pi~~~~~g~~ii-~~~~~~d  148 (282)
T 3gcz_A           74 RGSAKLRWMEERGYV---KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQG-HEKPIMRTTLGWNLI-RFKDKTD  148 (282)
T ss_dssp             THHHHHHHHHHTTSC---CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT-SCCCCCCCBTTGGGE-EEECSCC
T ss_pred             HHHHHHHHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCc-cccccccccCCCceE-EeeCCcc
Confidence            455667777666543   3688999999995555   3333344689999998763 223332    11111 11111 1


Q ss_pred             CCCCCCCCcceEEEeee
Q 027661          201 KLPFEDNSFDVITNVCK  217 (220)
Q Consensus       201 ~LPFeDnSFDaVtcsvS  217 (220)
                      -..++++.+|+|+|-.+
T Consensus       149 v~~l~~~~~DvVLSDmA  165 (282)
T 3gcz_A          149 VFNMEVIPGDTLLCDIG  165 (282)
T ss_dssp             GGGSCCCCCSEEEECCC
T ss_pred             hhhcCCCCcCEEEecCc
Confidence            12456789999999654

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=95.85  E-value=0.0019  Score=55.12  Aligned_cols=67  Identities=12%  Similarity=0.018  Sum_probs=40.3

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--------hhhccCCCCCCCCCCCCCcceEEEee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--------YVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--------~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +.+|||+|||.+..   +.+.....+++|+|+ +++++. +.++.+        +...|+...+  ++.+.+||+|+|..
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~D~v~~~~  256 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDAR--NFEGGAADVVMLND  256 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGG--GGTTCCEEEEEEES
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCc--ccCCCCccEEEEec
Confidence            78999999995443   333223359999999 777662 333322        1223333221  23456799999976


Q ss_pred             ee
Q 027661          217 KT  218 (220)
Q Consensus       217 SV  218 (220)
                      .+
T Consensus       257 vl  258 (352)
T 3mcz_A          257 CL  258 (352)
T ss_dssp             CG
T ss_pred             cc
Confidence            43

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=95.82  E-value=0.018  Score=49.10  Aligned_cols=64  Identities=11%  Similarity=-0.058  Sum_probs=40.8

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh-hCcCcchh--hhcc-----CCCCCCCCCCCCCcceEEEee
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK-RNPVLTEY--VVQD-----LNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~--~VqD-----LN~~p~LPFeDnSFDaVtcsv  216 (220)
                      +.+|||||||.+   .++-.. + .+|+++|+++++++ ++..+...  ...+     ...+. +.|. ++||+|++..
T Consensus        73 ~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~-~~~~-~~fD~Ii~d~  147 (262)
T 2cmg_A           73 LKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL-DLDI-KKYDLIFCLQ  147 (262)
T ss_dssp             CCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGG-GSCC-CCEEEEEESS
T ss_pred             CCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechH-HHHH-hhCCEEEECC
Confidence            579999999943   334444 4 79999999999999 46666442  0111     11111 1122 7899999853

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=95.82  E-value=0.0051  Score=53.14  Aligned_cols=63  Identities=10%  Similarity=-0.050  Sum_probs=39.4

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhhCcCcch--hhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTE--YVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaaN~rL~~--~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      +.+|||||||.+..   +.+.....+++|+|+ +++++.-+++..  +...|+..    |++  +||+|+|...+
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~----~~~--~~D~v~~~~vl  261 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVGGDMFK----SIP--SADAVLLKWVL  261 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEECCTTT----CCC--CCSEEEEESCG
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEeCccCC----CCC--CceEEEEcccc
Confidence            67999999995543   322222348999999 788875333322  22244433    444  49999997653

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=95.76  E-value=0.0071  Score=54.37  Aligned_cols=44  Identities=18%  Similarity=0.161  Sum_probs=26.7

Q ss_pred             CcEEEecCCHHHHh-hCcCcchhhh----ccCCCC-CCCCCCCCCcceEEE
Q 027661          170 DRIVGMGMNEEELK-RNPVLTEYVV----QDLNLN-PKLPFEDNSFDVITN  214 (220)
Q Consensus       170 ~~VVGLGmN~eELa-aN~rL~~~~V----qDLN~~-p~LPFeDnSFDaVtc  214 (220)
                      .+|+|.|+|+++++ ++..+...-+    +-.+.+ .+++.+ .+||+|+|
T Consensus       258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~  307 (385)
T 3ldu_A          258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIIT  307 (385)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEE
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEE
Confidence            47999999999998 3444332211    111111 234443 58999998

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=95.75  E-value=0.002  Score=54.67  Aligned_cols=63  Identities=16%  Similarity=-0.005  Sum_probs=40.2

Q ss_pred             CeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--------hhccCCCCCCCCCCCCCcceEEEeee
Q 027661          150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       150 ~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      .+|||+|||.+..   +.+.....+|+|+|+ +++++. +.++.+.        ...|+..    |++ ++||+|+|...
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~-~~~D~v~~~~v  242 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ----EVP-SNGDIYLLSRI  242 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT----CCC-SSCSEEEEESC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC----CCC-CCCCEEEEchh
Confidence            7999999995543   322222348999999 888873 4444322        2233332    444 68999999765


Q ss_pred             e
Q 027661          218 T  218 (220)
Q Consensus       218 V  218 (220)
                      +
T Consensus       243 l  243 (334)
T 2ip2_A          243 I  243 (334)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=95.73  E-value=0.0052  Score=55.61  Aligned_cols=102  Identities=17%  Similarity=0.177  Sum_probs=56.5

Q ss_pred             cCCCCCcccCcCCCCc---cCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc----------cCCCC------
Q 027661          107 RFDESPDSLFYETPRF---VTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH----------FPPGY------  167 (220)
Q Consensus       107 R~DesdD~~FY~~PRf---VtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH----------LP~~v------  167 (220)
                      -+|-+.++++-.--|.   -.-|-+...++|-.+  .-.    ++|..|||.|||.+.-          .|+.+      
T Consensus       156 ~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l--~~~----~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f  229 (384)
T 3ldg_A          156 MIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILL--SNW----FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAF  229 (384)
T ss_dssp             EEESSSSCTTCCSCCCC---CCCCHHHHHHHHHH--TTC----CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGG
T ss_pred             EEeccCCcccccCcccCCCCCCCcHHHHHHHHHH--hCC----CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchh
Confidence            4555666666333343   234566655555322  112    2478999999995432          22211      


Q ss_pred             -------------------------CCCcEEEecCCHHHHh-hCcCcchhhhc----cCCCC-CCCCCCCCCcceEEEe
Q 027661          168 -------------------------KQDRIVGMGMNEEELK-RNPVLTEYVVQ----DLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       168 -------------------------~~~~VVGLGmN~eELa-aN~rL~~~~Vq----DLN~~-p~LPFeDnSFDaVtcs  215 (220)
                                               ...+|+|.|.|+++++ ++..+...-+.    -.+.+ .++|.++ +||+|+|-
T Consensus       230 ~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD~Iv~N  307 (384)
T 3ldg_A          230 EEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-INGVLISN  307 (384)
T ss_dssp             GGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSCEEEEC
T ss_pred             hhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcCEEEEC
Confidence                                     1146999999999998 34444332221    11122 2455554 89999985

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=95.63  E-value=0.00049  Score=60.92  Aligned_cols=64  Identities=22%  Similarity=0.231  Sum_probs=38.9

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcch-------hhhccCCCC-CCCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTE-------YVVQDLNLN-PKLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~-------~~VqDLN~~-p~LPFeDnSFDaVtc  214 (220)
                      |.+|||+|||.+.   ++...  ..+|+|+|+|++.++. +..+..       +...|.... +.++-++++||+|+|
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            7899999999443   44443  4689999999999882 332221       111111110 112223789999998

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=95.63  E-value=0.0098  Score=52.19  Aligned_cols=64  Identities=13%  Similarity=0.100  Sum_probs=40.5

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhhCcCcc--hhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVLT--EYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaaN~rL~--~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||.+.   ++.+.....+++|+|+ +++++.-+...  ++...|+..    |++++  |+|++...+
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~----~~p~~--D~v~~~~vl  271 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDMFD----GVPKG--DAIFIKWIC  271 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT----CCCCC--SEEEEESCG
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCCCC----CCCCC--CEEEEechh
Confidence            47899999999443   3433333358999999 88887422222  223345442    45554  999987644

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=95.58  E-value=0.0027  Score=57.57  Aligned_cols=69  Identities=19%  Similarity=0.341  Sum_probs=47.2

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc---------CCCCC-CC-CCCCCCcce
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD---------LNLNP-KL-PFEDNSFDV  211 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD---------LN~~p-~L-PFeDnSFDa  211 (220)
                      +||.+|||+|++   -..|+.+....++|+..|.++.-++. ..++..+....         .+.+. ++ ++..+.||.
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~  226 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR  226 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence            579999999999   45677664445789999999998874 66665543322         12221 22 245689999


Q ss_pred             EEEe
Q 027661          212 ITNV  215 (220)
Q Consensus       212 Vtcs  215 (220)
                      |++=
T Consensus       227 VLlD  230 (359)
T 4fzv_A          227 VLVD  230 (359)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9973

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=95.50  E-value=0.011  Score=51.78  Aligned_cols=64  Identities=13%  Similarity=0.075  Sum_probs=40.3

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhhCcCcc--hhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVLT--EYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaaN~rL~--~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||.+.   ++.+.....+++|+|+ +++++.-+...  ++...|+..    |++++  |+|++...+
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~----~~p~~--D~v~~~~vl  269 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDMFK----EVPSG--DTILMKWIL  269 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTT----CCCCC--SEEEEESCG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCcCC----CCCCC--CEEEehHHh
Confidence            47899999999443   3433333358999999 88887422222  223345443    55555  999987644

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.15  E-value=0.013  Score=56.78  Aligned_cols=101  Identities=17%  Similarity=0.180  Sum_probs=58.6

Q ss_pred             CCCCCcccCcCCCCcc---CCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc----------cCCCCC------
Q 027661          108 FDESPDSLFYETPRFV---THIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH----------FPPGYK------  168 (220)
Q Consensus       108 ~DesdD~~FY~~PRfV---tHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH----------LP~~v~------  168 (220)
                      +|-+.++++=.--|.-   ..|-+...+++-.+    ...  ++|..|||.|||.+.-          +++.+.      
T Consensus       153 ld~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~----~~~--~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~f  226 (703)
T 3v97_A          153 LDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMR----SGW--QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGF  226 (703)
T ss_dssp             EESSSSCTTCCSSSCSSCCCSSCHHHHHHHHHH----TTC--CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTT
T ss_pred             EecCCCccccccccccCCCCCCcHHHHHHHHHh----hCC--CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccch
Confidence            4556666663333433   34666666665432    211  2478999999994322          333221      


Q ss_pred             -----------------------------CCcEEEecCCHHHHh-hCcCcchhhh--------ccCCCCCCCCCCCCCcc
Q 027661          169 -----------------------------QDRIVGMGMNEEELK-RNPVLTEYVV--------QDLNLNPKLPFEDNSFD  210 (220)
Q Consensus       169 -----------------------------~~~VVGLGmN~eELa-aN~rL~~~~V--------qDLN~~p~LPFeDnSFD  210 (220)
                                                   ..+|+|.|+|+++++ ++..+...-+        .|... ...|+.+++||
T Consensus       227 e~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~-~~~~~~~~~~d  305 (703)
T 3v97_A          227 SGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQ-LTNPLPKGPYG  305 (703)
T ss_dssp             TTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGG-CCCSCTTCCCC
T ss_pred             hhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh-CccccccCCCC
Confidence                                         148999999999998 3443333222        22211 23367777999


Q ss_pred             eEEEe
Q 027661          211 VITNV  215 (220)
Q Consensus       211 aVtcs  215 (220)
                      +|+|-
T Consensus       306 ~Iv~N  310 (703)
T 3v97_A          306 TVLSN  310 (703)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99985

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=95.12  E-value=0.0054  Score=55.40  Aligned_cols=45  Identities=9%  Similarity=0.118  Sum_probs=29.9

Q ss_pred             HHHhhCCCCCCCCCeEeeeccchhhccCC-------C---------CCCCcEEEecCCHHHHh
Q 027661          137 YYSEVFPPSNTPGVSILDLCSSWVSHFPP-------G---------YKQDRIVGMGMNEEELK  183 (220)
Q Consensus       137 lY~~~lp~~~~pG~~VLDLccSWvSHLP~-------~---------v~~~~VVGLGmN~eELa  183 (220)
                      +-.+.+.+  .+|.+|||.|||.+..+-.       .         +...+++|.|+|+..++
T Consensus       162 ~mv~~l~~--~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~  222 (445)
T 2okc_A          162 AMVDCINP--QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVT  222 (445)
T ss_dssp             HHHHHHCC--CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHH
T ss_pred             HHHHHhCC--CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHH
Confidence            33344443  3588999999996655211       0         01258999999999887

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=94.85  E-value=0.0092  Score=52.77  Aligned_cols=40  Identities=18%  Similarity=0.190  Sum_probs=27.2

Q ss_pred             CeEeeeccch----hhc-cCCC-CCCCcEEEecCCHHHHhh-CcCcc
Q 027661          150 VSILDLCSSW----VSH-FPPG-YKQDRIVGMGMNEEELKR-NPVLT  189 (220)
Q Consensus       150 ~~VLDLccSW----vSH-LP~~-v~~~~VVGLGmN~eELaa-N~rL~  189 (220)
                      .+|||||||.    ..| +... ....+|+|+|.+++||+. +.+|.
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~  126 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLA  126 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHC
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhc
Confidence            5899999995    123 1110 112599999999999994 65554

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=94.72  E-value=0.028  Score=51.97  Aligned_cols=94  Identities=15%  Similarity=0.196  Sum_probs=55.1

Q ss_pred             CCCccCCCCHHHHHH--HHHHHHhhCCCC-----CCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCH--HHHhhCc
Q 027661          119 TPRFVTHIDDPAIAA--LTKYYSEVFPPS-----NTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNE--EELKRNP  186 (220)
Q Consensus       119 ~PRfVtHIDd~ai~~--LT~lY~~~lp~~-----~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~--eELaaN~  186 (220)
                      .||+---=|...++.  |.+.....++..     -++|++||||||+   |...+-+.  .++|+|+|..+  ..|..++
T Consensus       175 i~rl~~~~~~pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~  252 (375)
T 4auk_A          175 IPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTG  252 (375)
T ss_dssp             CCCCCCCTTSSCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTT
T ss_pred             cccccCCCCCCCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCC
Confidence            466654445444443  445444433211     0359999999998   87777552  47999999652  1223355


Q ss_pred             CcchhhhccCCCCCCCCCCCCCcceEEEeeee
Q 027661          187 VLTEYVVQDLNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       187 rL~~~~VqDLN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      +++.. ..|   ..++..++..||.|+|-.+.
T Consensus       253 ~V~~~-~~d---~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          253 QVTWL-RED---GFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             CEEEE-CSC---TTTCCCCSSCEEEEEECCSS
T ss_pred             CeEEE-eCc---cccccCCCCCcCEEEEcCCC
Confidence            55432 111   12344556889999997654

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=94.53  E-value=0.047  Score=48.06  Aligned_cols=59  Identities=10%  Similarity=0.120  Sum_probs=42.4

Q ss_pred             CCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh
Q 027661          120 PRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       120 PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa  183 (220)
                      |.--..+.....+.+++...+.+..   .|.+||||+||.+.   ++..  ...+|+|+|+|+++++
T Consensus       188 ~~~F~Q~n~~~~~~l~~~~~~~~~~---~~~~vLDl~cG~G~~~l~la~--~~~~V~gvd~~~~ai~  249 (369)
T 3bt7_A          188 ENSFTQPNAAMNIQMLEWALDVTKG---SKGDLLELYCGNGNFSLALAR--NFDRVLATEIAKPSVA  249 (369)
T ss_dssp             TTSCCCSBHHHHHHHHHHHHHHTTT---CCSEEEEESCTTSHHHHHHGG--GSSEEEEECCCHHHHH
T ss_pred             CCCeecCCHHHHHHHHHHHHHHhhc---CCCEEEEccCCCCHHHHHHHh--cCCEEEEEECCHHHHH
Confidence            3333444566667888888777754   26789999999443   4554  2369999999999998

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=94.50  E-value=0.026  Score=47.96  Aligned_cols=56  Identities=7%  Similarity=0.044  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc--cCCCCCCCc--EEEecCCHHHHhh-CcCcch
Q 027661          126 IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH--FPPGYKQDR--IVGMGMNEEELKR-NPVLTE  190 (220)
Q Consensus       126 IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH--LP~~v~~~~--VVGLGmN~eELaa-N~rL~~  190 (220)
                      +|...++++.+...  +    ++|.+|||+|||.+..  +..   ..+  |+|+|+++++++. +.++..
T Consensus         5 ~d~~i~~~iv~~~~--~----~~~~~VLEIG~G~G~lt~l~~---~~~~~v~avEid~~~~~~a~~~~~~   65 (252)
T 1qyr_A            5 NDQFVIDSIVSAIN--P----QKGQAMVEIGPGLAALTEPVG---ERLDQLTVIELDRDLAARLQTHPFL   65 (252)
T ss_dssp             CCHHHHHHHHHHHC--C----CTTCCEEEECCTTTTTHHHHH---TTCSCEEEECCCHHHHHHHHTCTTT
T ss_pred             CCHHHHHHHHHhcC--C----CCcCEEEEECCCCcHHHHhhh---CCCCeEEEEECCHHHHHHHHHHhcc
Confidence            57777777766542  2    2488999999995543  322   245  9999999999994 555543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=94.25  E-value=0.012  Score=52.57  Aligned_cols=66  Identities=20%  Similarity=0.106  Sum_probs=38.2

Q ss_pred             CeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh---hhccCCCCC-C-C-CCCCCCcceEEEe
Q 027661          150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY---VVQDLNLNP-K-L-PFEDNSFDVITNV  215 (220)
Q Consensus       150 ~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~---~VqDLN~~p-~-L-PFeDnSFDaVtcs  215 (220)
                      .+|||||||.+.-   +.+.....+|+++|+++++++. +..+...   .++-...+. + + .+++++||+|++-
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D  166 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRD  166 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence            3899999994432   1111112389999999999983 4444221   011111110 1 1 3568899999984

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=93.96  E-value=0.029  Score=48.52  Aligned_cols=62  Identities=11%  Similarity=0.208  Sum_probs=40.2

Q ss_pred             cCCCCccCC--CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCC--CCcEEEecCCHHHHhh
Q 027661          117 YETPRFVTH--IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYK--QDRIVGMGMNEEELKR  184 (220)
Q Consensus       117 Y~~PRfVtH--IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~--~~~VVGLGmN~eELaa  184 (220)
                      ....++..|  +|...++++-+...  +    ++|.+|||||||.+..   |.+...  .++|+|+|+++++++.
T Consensus        15 ~~~k~~GQ~fL~d~~i~~~iv~~~~--~----~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~   83 (279)
T 3uzu_A           15 FARKRFGQNFLVDHGVIDAIVAAIR--P----ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGR   83 (279)
T ss_dssp             ---CCCSCCEECCHHHHHHHHHHHC--C----CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHH
T ss_pred             CccccCCccccCCHHHHHHHHHhcC--C----CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHH
Confidence            344556555  58888877765432  2    2488999999996654   333221  1349999999999983

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.15  E-value=0.0081  Score=51.42  Aligned_cols=44  Identities=11%  Similarity=0.062  Sum_probs=31.7

Q ss_pred             CCCeEeeeccchhhccCCCC-CCCcEEEecCCHHHHh-hCcCcchh
Q 027661          148 PGVSILDLCSSWVSHFPPGY-KQDRIVGMGMNEEELK-RNPVLTEY  191 (220)
Q Consensus       148 pG~~VLDLccSWvSHLP~~v-~~~~VVGLGmN~eELa-aN~rL~~~  191 (220)
                      +|..|||++||.++..-.-. ...+++|+|+|++.++ ++.++...
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            58999999999665521111 1258999999999998 47776553

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=92.75  E-value=0.044  Score=49.00  Aligned_cols=68  Identities=19%  Similarity=0.173  Sum_probs=44.0

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCC-C----C-CCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNP-K----L-PFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p-~----L-PFeDnSFDaVtcsvS  217 (220)
                      ||..+||..||-+-|   +.+.  .++|+|+|-+++.++. .. |.+--+.-++.+. +    | ....++||+|++-.|
T Consensus        22 ~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~DLG   98 (285)
T 1wg8_A           22 PGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLG   98 (285)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECS
T ss_pred             CCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hccCCEEEEECCcchHHHHHHHcCCCCcCEEEeCCc
Confidence            588999999998888   4333  5799999999999984 44 6431111111110 1    1 123368999998665


Q ss_pred             e
Q 027661          218 T  218 (220)
Q Consensus       218 V  218 (220)
                      |
T Consensus        99 v   99 (285)
T 1wg8_A           99 V   99 (285)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=92.14  E-value=0.056  Score=46.61  Aligned_cols=30  Identities=10%  Similarity=0.020  Sum_probs=22.8

Q ss_pred             CeEeeeccchhhc---cCCCCCCCcEEEecCCHHH
Q 027661          150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEE  181 (220)
Q Consensus       150 ~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eE  181 (220)
                      .+|||++||.+..   +...  .++|+|+|.|++.
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~  122 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVV  122 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHH
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHH
Confidence            8999999995544   4332  3589999999964

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=91.78  E-value=0.026  Score=51.63  Aligned_cols=67  Identities=13%  Similarity=0.040  Sum_probs=39.2

Q ss_pred             CCCeEeeeccch---hhccCCCCCC-CcEEEecCCHHHHhh---CcCcchh--h-hccCCCCC--CCC-CCCCCcceEEE
Q 027661          148 PGVSILDLCSSW---VSHFPPGYKQ-DRIVGMGMNEEELKR---NPVLTEY--V-VQDLNLNP--KLP-FEDNSFDVITN  214 (220)
Q Consensus       148 pG~~VLDLccSW---vSHLP~~v~~-~~VVGLGmN~eELaa---N~rL~~~--~-VqDLN~~p--~LP-FeDnSFDaVtc  214 (220)
                      +|.+|||||||.   ..++...... ++|+++|.|++.++.   |-+++..  . +.-++.+.  -+. -....||.|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            488999999994   3444443322 689999999987762   4443321  0 22222221  011 11467999986

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=91.76  E-value=0.18  Score=45.07  Aligned_cols=47  Identities=17%  Similarity=0.118  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccc---hhhccCCC--CCC--CcEEEecC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSS---WVSHFPPG--YKQ--DRIVGMGM  177 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~--v~~--~~VVGLGm  177 (220)
                      ..+.-.|.++=.+.|-   +||++||||||+   |.-...+.  ++.  +.|+|.|+
T Consensus        56 SRAayKL~EIdeK~li---kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~  109 (269)
T 2px2_A           56 SRGTAKLRWLVERRFV---QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG  109 (269)
T ss_dssp             STHHHHHHHHHHTTSC---CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT
T ss_pred             cHHHHHHHHHHHcCCC---CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc
Confidence            4566677777666544   479999999998   77777665  422  55666664

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=91.50  E-value=0.2  Score=45.24  Aligned_cols=68  Identities=13%  Similarity=0.062  Sum_probs=38.7

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhhCcCcc---h-hhh-ccCCCCCCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVLT---E-YVV-QDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaaN~rL~---~-~~V-qDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      +|.+||||||++++   .+-+..+-..|+|+|+...+ ..+|+..   . -++ ..-+.+ -.-+....||.|+|-.+
T Consensus        81 ~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~-~~~P~~~~~~~~~iv~~~~~~d-i~~l~~~~~DlVlsD~A  156 (300)
T 3eld_A           81 ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEG-HEKPIHMQTLGWNIVKFKDKSN-VFTMPTEPSDTLLCDIG  156 (300)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT-SCCCCCCCBTTGGGEEEECSCC-TTTSCCCCCSEEEECCC
T ss_pred             CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccc-ccccccccccCCceEEeecCce-eeecCCCCcCEEeecCc
Confidence            59999999999444   45443333579999997653 2233321   1 111 110101 11245678999999654

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=91.28  E-value=0.3  Score=44.67  Aligned_cols=82  Identities=16%  Similarity=0.188  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhhCcCcc----hhhh---ccCCC
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKRNPVLT----EYVV---QDLNL  198 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaaN~rL~----~~~V---qDLN~  198 (220)
                      .+...|.++-.+.+-   +||+.||||+|+   |.-......+-.+|+|+|+....-. +|++.    -..|   +..|.
T Consensus        78 R~~~KL~ei~~~~~l---~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he-~P~~~~ql~w~lV~~~~~~Dv  153 (321)
T 3lkz_A           78 RGTAKLRWLVERRFL---EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHE-EPQLVQSYGWNIVTMKSGVDV  153 (321)
T ss_dssp             THHHHHHHHHHTTSC---CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSC-CCCCCCBTTGGGEEEECSCCT
T ss_pred             hHHHHHHHHHHhcCC---CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCcc-CcchhhhcCCcceEEEeccCH
Confidence            455667777776544   368899999999   6665555555579999999877432 23222    2223   22222


Q ss_pred             CCCCCCCCCCcceEEEeee
Q 027661          199 NPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       199 ~p~LPFeDnSFDaVtcsvS  217 (220)
                       -.|+-  ..+|.|+|-++
T Consensus       154 -~~l~~--~~~D~ivcDig  169 (321)
T 3lkz_A          154 -FYRPS--ECCDTLLCDIG  169 (321)
T ss_dssp             -TSSCC--CCCSEEEECCC
T ss_pred             -hhCCC--CCCCEEEEECc
Confidence             12222  56999999765

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=91.12  E-value=0.14  Score=47.13  Aligned_cols=72  Identities=8%  Similarity=0.006  Sum_probs=46.1

Q ss_pred             CCCCeEeeeccchhhc---cCCCCCC-CcEEEecCCHHHHhhCcCcchhhhccCCCC-----CCCCCC--CCCcceEEEe
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEEELKRNPVLTEYVVQDLNLN-----PKLPFE--DNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN~eELaaN~rL~~~~VqDLN~~-----p~LPFe--DnSFDaVtcs  215 (220)
                      +||+.++|.+||-+-|   +-+.+++ ++|+|+|.+++.|+.-.+|....++-++.+     ..|+-.  .+++|+|+.-
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~l~~~L~~~g~~~~vDgILfD  135 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLD  135 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGGHHHHHHHTTCTTCEEEEEEE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCCcccEEEEC
Confidence            3699999999997777   5565644 899999999999994236632211111111     011110  1479999987


Q ss_pred             eee
Q 027661          216 CKT  218 (220)
Q Consensus       216 vSV  218 (220)
                      .||
T Consensus       136 LGV  138 (347)
T 3tka_A          136 LGV  138 (347)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            765

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=91.09  E-value=0.056  Score=50.83  Aligned_cols=36  Identities=8%  Similarity=0.133  Sum_probs=26.0

Q ss_pred             CCCeEeeeccchhhc-------cCCCC--------------CCCcEEEecCCHHHHh
Q 027661          148 PGVSILDLCSSWVSH-------FPPGY--------------KQDRIVGMGMNEEELK  183 (220)
Q Consensus       148 pG~~VLDLccSWvSH-------LP~~v--------------~~~~VVGLGmN~eELa  183 (220)
                      +|.+|||.|||.+.-       +.+..              ...+++|.|+|+..++
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~  225 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR  225 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHH
Confidence            588999999996543       22211              1247999999999877

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=90.74  E-value=0.19  Score=45.02  Aligned_cols=82  Identities=16%  Similarity=0.136  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhhCcCcchh----hhccCCC-C-
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEY----VVQDLNL-N-  199 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaaN~rL~~~----~VqDLN~-~-  199 (220)
                      .+...|.++-.+.+-   +||+.||||+|+   |.-......+-.+|+|+|+....- .+|++.+.    .+.=.-. + 
T Consensus        62 Ra~~KL~ei~ek~~l---~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~gh-e~P~~~~s~gwn~v~fk~gvDv  137 (267)
T 3p8z_A           62 RGSAKLQWFVERNMV---IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGH-EEPVPMSTYGWNIVKLMSGKDV  137 (267)
T ss_dssp             THHHHHHHHHHTTSS---CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTS-CCCCCCCCTTTTSEEEECSCCG
T ss_pred             hHHHHHHHHHHhcCC---CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCc-cCcchhhhcCcCceEEEeccce
Confidence            456677777766644   368999999999   665554544556999999986554 35555432    1110001 1 


Q ss_pred             CCCCCCCCCcceEEEee
Q 027661          200 PKLPFEDNSFDVITNVC  216 (220)
Q Consensus       200 p~LPFeDnSFDaVtcsv  216 (220)
                      ..+  +...+|.++|-.
T Consensus       138 ~~~--~~~~~DtllcDI  152 (267)
T 3p8z_A          138 FYL--PPEKCDTLLCDI  152 (267)
T ss_dssp             GGC--CCCCCSEEEECC
T ss_pred             eec--CCccccEEEEec
Confidence            112  226699999954

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=88.88  E-value=0.26  Score=46.56  Aligned_cols=66  Identities=15%  Similarity=0.076  Sum_probs=37.5

Q ss_pred             CCCeEeeeccchhhcc-------CC---CCC--------CCcEEEecCCHHHHh-hCcCcchhhh-ccC---CCC--CCC
Q 027661          148 PGVSILDLCSSWVSHF-------PP---GYK--------QDRIVGMGMNEEELK-RNPVLTEYVV-QDL---NLN--PKL  202 (220)
Q Consensus       148 pG~~VLDLccSWvSHL-------P~---~v~--------~~~VVGLGmN~eELa-aN~rL~~~~V-qDL---N~~--p~L  202 (220)
                      +| +|||.|||.+.-|       .+   +..        ..++.|.|+|+..+. +.-.+--+-+ .++   +.+  ..-
T Consensus       245 ~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~  323 (544)
T 3khk_A          245 KG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDD  323 (544)
T ss_dssp             SE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSC
T ss_pred             CC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCc
Confidence            35 9999999955432       10   000        247999999999877 2222211111 111   111  122


Q ss_pred             CCCCCCcceEEE
Q 027661          203 PFEDNSFDVITN  214 (220)
Q Consensus       203 PFeDnSFDaVtc  214 (220)
                      ++.+..||+|++
T Consensus       324 ~~~~~~fD~Iv~  335 (544)
T 3khk_A          324 QHPDLRADFVMT  335 (544)
T ss_dssp             SCTTCCEEEEEE
T ss_pred             ccccccccEEEE
Confidence            467789999997

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=88.12  E-value=0.45  Score=45.08  Aligned_cols=68  Identities=18%  Similarity=0.177  Sum_probs=39.7

Q ss_pred             CCCeEeeeccchhhccCC------CCCCCcEEEecCCHHHHh-h--CcCcchhhhcc---CCCC-CC--CC-CCCCCcce
Q 027661          148 PGVSILDLCSSWVSHFPP------GYKQDRIVGMGMNEEELK-R--NPVLTEYVVQD---LNLN-PK--LP-FEDNSFDV  211 (220)
Q Consensus       148 pG~~VLDLccSWvSHLP~------~v~~~~VVGLGmN~eELa-a--N~rL~~~~VqD---LN~~-p~--LP-FeDnSFDa  211 (220)
                      +|.+|||.|||.+.-|-.      +....+++|.++|+.... +  |=.+...-..+   .+.+ ..  .| +.+..||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            588999999996655321      112468999999999776 2  32221110000   1111 11  13 56789999


Q ss_pred             EEEe
Q 027661          212 ITNV  215 (220)
Q Consensus       212 Vtcs  215 (220)
                      |++-
T Consensus       301 IvaN  304 (542)
T 3lkd_A          301 VLMN  304 (542)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9873

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=87.84  E-value=0.71  Score=47.06  Aligned_cols=35  Identities=14%  Similarity=0.009  Sum_probs=25.9

Q ss_pred             CCCeEeeeccchhhc-------cCCCCCCCcEEEecCCHHHHh
Q 027661          148 PGVSILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       148 pG~~VLDLccSWvSH-------LP~~v~~~~VVGLGmN~eELa  183 (220)
                      +|.+|||.|||.+.-       ++. ....+++|.|+|++.++
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~e-i~~~~IyGvEIDp~Al~  362 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNN-VMPRQIWANDIETLFLE  362 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTT-CCGGGEEEECSCGGGHH
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcc-cCCCeEEEEECCHHHHH
Confidence            588999999995543       331 23468999999998665

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=87.39  E-value=0.2  Score=45.12  Aligned_cols=35  Identities=14%  Similarity=0.086  Sum_probs=26.2

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa  183 (220)
                      |.+|||+|||.+   .++...++..+|++.|.|++.++
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~   85 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYE   85 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence            789999999933   33443333458999999999877

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=86.48  E-value=0.31  Score=44.25  Aligned_cols=82  Identities=20%  Similarity=0.166  Sum_probs=50.6

Q ss_pred             HHHHHHHHHhh-CCCCCCCCCeEeeeccchhh-------c---------------cCCCCCCCcEEEecCCHHHHhh-Cc
Q 027661          131 IAALTKYYSEV-FPPSNTPGVSILDLCSSWVS-------H---------------FPPGYKQDRIVGMGMNEEELKR-NP  186 (220)
Q Consensus       131 i~~LT~lY~~~-lp~~~~pG~~VLDLccSWvS-------H---------------LP~~v~~~~VVGLGmN~eELaa-N~  186 (220)
                      .++++++|... .|.    ..+|+|||||.+.       .               -++++   +|+.-|+-.+|... -.
T Consensus        37 ~~ai~~~~~~~~~~~----~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~---~v~~nDLp~NDFntlF~  109 (359)
T 1m6e_X           37 EAAITALYSGDTVTT----RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEY---QIFLNDLPGNDFNAIFR  109 (359)
T ss_dssp             HHHHHHHHSSSSSSS----EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEE---EEEEEECTTSCHHHHHT
T ss_pred             HHHHHHHhhccCCCC----ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCce---EEEecCCCchHHHHHHH
Confidence            45556667654 332    4689999999331       1               12234   89999998888873 33


Q ss_pred             Ccchh-------hhccCCCC-CCCCCCCCCcceEEEeeeec
Q 027661          187 VLTEY-------VVQDLNLN-PKLPFEDNSFDVITNVCKTH  219 (220)
Q Consensus       187 rL~~~-------~VqDLN~~-p~LPFeDnSFDaVtcsvSVd  219 (220)
                      .|..+       ++.-.-.. -...|+++|||.|.++.+++
T Consensus       110 ~L~~~~~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLH  150 (359)
T 1m6e_X          110 SLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLM  150 (359)
T ss_dssp             TTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTT
T ss_pred             hcchhcccCCCEEEEecchhhhhccCCCCceEEEEehhhhh
Confidence            34332       11111111 15689999999999998764

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=85.20  E-value=0.26  Score=44.89  Aligned_cols=18  Identities=17%  Similarity=0.279  Sum_probs=15.2

Q ss_pred             CCCCCCCcceEEEeeeec
Q 027661          202 LPFEDNSFDVITNVCKTH  219 (220)
Q Consensus       202 LPFeDnSFDaVtcsvSVd  219 (220)
                      -.|+++|||.|.++.+++
T Consensus       144 rlfP~~S~d~v~Ss~aLH  161 (374)
T 3b5i_A          144 RLFPARTIDFFHSAFSLH  161 (374)
T ss_dssp             CCSCTTCEEEEEEESCTT
T ss_pred             ccCCCcceEEEEecceee
Confidence            458999999999998753

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=83.83  E-value=0.1  Score=43.72  Aligned_cols=41  Identities=24%  Similarity=0.267  Sum_probs=28.8

Q ss_pred             CCCeEeeeccchhhc--cCCCCCCCcEEEecCCHHHHh-hCcCcc
Q 027661          148 PGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELK-RNPVLT  189 (220)
Q Consensus       148 pG~~VLDLccSWvSH--LP~~v~~~~VVGLGmN~eELa-aN~rL~  189 (220)
                      +|..|||.+||.++-  ..... ..+++|.++|++-.. +.+++.
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~-gr~~ig~e~~~~~~~~~~~r~~  255 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLN  255 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHH
Confidence            589999999994443  22222 258999999998877 355554

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=80.80  E-value=0.88  Score=37.63  Aligned_cols=47  Identities=11%  Similarity=0.104  Sum_probs=31.1

Q ss_pred             HHHHHHHHhhCCCCCCCCCeEeeeccchhh----ccCCCCCCCcEEEecCCHHHHh
Q 027661          132 AALTKYYSEVFPPSNTPGVSILDLCSSWVS----HFPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       132 ~~LT~lY~~~lp~~~~pG~~VLDLccSWvS----HLP~~v~~~~VVGLGmN~eELa  183 (220)
                      +.|.+|..+.+.+    +.+|||+|||-.-    +|.+.. .-.|++.|+|+.-+.
T Consensus        23 e~LaeYI~~~~~~----~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~   73 (153)
T 2k4m_A           23 NDLAVYIIRCSGP----GTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG   73 (153)
T ss_dssp             HHHHHHHHHHSCS----SSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT
T ss_pred             HHHHHHHHhcCCC----CCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc
Confidence            3455555555543    6799999999443    564311 127999999987655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.12
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.05
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.94
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.9
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.9
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.78
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.71
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.7
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.69
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.65
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.65
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.64
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.62
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.62
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.57
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.47
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.46
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.4
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.37
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.36
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.31
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.3
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.28
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.27
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.26
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.25
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.24
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.23
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.17
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.05
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.05
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.04
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.98
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.94
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.86
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.84
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.81
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.7
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.62
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.6
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.57
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.39
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.32
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.24
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.23
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.19
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.01
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.99
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	96.94
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	96.85
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	96.78
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	96.71
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	96.65
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.63
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	96.59
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	96.52
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.42
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	96.07
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	95.94
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	95.91
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	95.78
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	95.68
d2h00a1	250	Methyltransferase 10 domain containing protein MET	95.55
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	95.51
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	95.21
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	95.11
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	95.0
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	94.62
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	94.31
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	94.22
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	92.73
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	92.16
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	91.79
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	91.27
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	90.89
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	87.53
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	86.15
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	85.72
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	84.02
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	80.11

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.12  E-value=6.2e-12  Score=100.77  Aligned_cols=70  Identities=24%  Similarity=0.405  Sum_probs=51.0

Q ss_pred             CCCCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCCC----CCCCCCCCCCcceEEEeeee
Q 027661          147 TPGVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNL----NPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       147 ~pG~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN~----~p~LPFeDnSFDaVtcsvSV  218 (220)
                      +||++|||||||+   ..+|.+..  .+|+|+|+|++||+ +++++.+.-.++++.    ..++||+|++||+|+|..++
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   92 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA   92 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeecee
Confidence            4799999999994   44566643  69999999999998 455554432221111    14689999999999998765

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=1.8e-11  Score=94.81  Aligned_cols=85  Identities=19%  Similarity=0.246  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh--hhccCCCC-C
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--VVQDLNLN-P  200 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--~VqDLN~~-p  200 (220)
                      +.-+..|.++-.+.+++    +.+|||||||.+.+   +.+.  ..+|+|+|+|++|++. +.++...  .+..+..+ .
T Consensus        21 ~~~~~~~~~~~~~~l~~----~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~   94 (226)
T d1ve3a1          21 RSRIETLEPLLMKYMKK----RGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDAR   94 (226)
T ss_dssp             HHHHHHHHHHHHHSCCS----CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTT
T ss_pred             HHHHHHHHHHHHHhcCC----CCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccc
Confidence            34567777777788875    67999999997776   4432  3589999999999983 4333221  11222222 3


Q ss_pred             CCCCCCCCcceEEEeeee
Q 027661          201 KLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       201 ~LPFeDnSFDaVtcsvSV  218 (220)
                      +|||++++||+|+|..++
T Consensus        95 ~l~~~~~~fD~I~~~~~l  112 (226)
T d1ve3a1          95 KLSFEDKTFDYVIFIDSI  112 (226)
T ss_dssp             SCCSCTTCEEEEEEESCG
T ss_pred             cccccCcCceEEEEecch
Confidence            689999999999998765

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.94  E-value=1.1e-10  Score=96.19  Aligned_cols=101  Identities=18%  Similarity=0.140  Sum_probs=60.7

Q ss_pred             cCCCCccCCCCHHHHHHHHHHHHhhCCCCC-CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh
Q 027661          117 YETPRFVTHIDDPAIAALTKYYSEVFPPSN-TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY  191 (220)
Q Consensus       117 Y~~PRfVtHIDd~ai~~LT~lY~~~lp~~~-~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~  191 (220)
                      |..|---..+.+..++....+..++....+ .||++|||||||++.+   |.+.. ..+|+|+|+|+.+++. +.+....
T Consensus        35 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~  113 (282)
T d2o57a1          35 YKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQA  113 (282)
T ss_dssp             CCSSGGGSCHHHHHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccc
Confidence            444433333344444444444444421111 3599999999997754   44432 2489999999999984 5554433


Q ss_pred             hhc-c---CCCC-CCCCCCCCCcceEEEeeee
Q 027661          192 VVQ-D---LNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       192 ~Vq-D---LN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      -+. +   ...+ .+|||++++||+|+|..++
T Consensus       114 gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  145 (282)
T d2o57a1         114 GLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  145 (282)
T ss_dssp             TCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             cccccccccccccccccccccccchhhccchh
Confidence            221 1   1112 4789999999999987654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.90  E-value=1.7e-10  Score=90.50  Aligned_cols=70  Identities=20%  Similarity=0.340  Sum_probs=48.6

Q ss_pred             CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc---CCCC-CCCCCCCCCcceEEEeeee
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD---LNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++|++|||||||++..   +.+..  .+|+|+|+|+++++. +.++.+....+   .+.+ .+|||+|++||+|+|..++
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l   91 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA   91 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred             CCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccccc
Confidence            3589999999996654   54432  599999999999983 44443321111   1112 3689999999999998765

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.90  E-value=6.6e-10  Score=86.88  Aligned_cols=75  Identities=17%  Similarity=0.218  Sum_probs=52.0

Q ss_pred             HHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCCCCCCCCCCCCCcce
Q 027661          136 KYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLNPKLPFEDNSFDV  211 (220)
Q Consensus       136 ~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN~~p~LPFeDnSFDa  211 (220)
                      .+-.+.+++    +.+|||+|||.+.+   |.+.  ..+|+|+|+|+++++ ++.+.....++ . ...+|||+|++||+
T Consensus        34 ~~~~~~~~~----~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~-~-~~~~l~~~~~~fD~  105 (246)
T d2avna1          34 SFLEEYLKN----PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVE-A-KAEDLPFPSGAFEA  105 (246)
T ss_dssp             HHHHHHCCS----CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEE-C-CTTSCCSCTTCEEE
T ss_pred             HHHHHhcCC----CCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccccccccc-c-cccccccccccccc
Confidence            334455654    78999999996655   5442  358999999999999 35444333221 1 12468999999999


Q ss_pred             EEEeeee
Q 027661          212 ITNVCKT  218 (220)
Q Consensus       212 VtcsvSV  218 (220)
                      |+|..++
T Consensus       106 ii~~~~~  112 (246)
T d2avna1         106 VLALGDV  112 (246)
T ss_dssp             EEECSSH
T ss_pred             eeeecch
Confidence            9986543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=3.5e-09  Score=87.89  Aligned_cols=88  Identities=18%  Similarity=0.274  Sum_probs=63.5

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcch--hhhccCCC
Q 027661          125 HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTE--YVVQDLNL  198 (220)
Q Consensus       125 HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~--~~VqDLN~  198 (220)
                      +.-....+.+.+...+.+|.   ++.+|||+|||++.+   |.+.....+|+|+|+|+++++. +.+...  +.+.|.  
T Consensus        64 g~~~~l~~~~~~~l~~~~~~---~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~--  138 (268)
T d1p91a_          64 GHYQPLRDAIVAQLRERLDD---KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS--  138 (268)
T ss_dssp             TTTHHHHHHHHHHHHHHSCT---TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT--
T ss_pred             CchHHHHHHHHHHHHHhcCC---CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeeh--
Confidence            34455677788888888886   478999999997665   4444444699999999999983 433322  222232  


Q ss_pred             CCCCCCCCCCcceEEEeeee
Q 027661          199 NPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       199 ~p~LPFeDnSFDaVtcsvSV  218 (220)
                       .+|||+|++||+|+|.++.
T Consensus       139 -~~l~~~~~sfD~v~~~~~~  157 (268)
T d1p91a_         139 -HRLPFSDTSMDAIIRIYAP  157 (268)
T ss_dssp             -TSCSBCTTCEEEEEEESCC
T ss_pred             -hhccCCCCCEEEEeecCCH
Confidence             4689999999999997653

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=4.6e-09  Score=83.46  Aligned_cols=91  Identities=13%  Similarity=0.050  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhccCCCC--CCCcEEEecCCHHHHh-hCcCcchhh-----------h
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY--KQDRIVGMGMNEEELK-RNPVLTEYV-----------V  193 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSHLP~~v--~~~~VVGLGmN~eELa-aN~rL~~~~-----------V  193 (220)
                      +.++..+...+.+.+.+...+|.+|||||||++.|...-.  ...+|+|+|+++++++ +++++.+..           +
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~  110 (257)
T d2a14a1          31 AEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFA  110 (257)
T ss_dssp             HHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHH
Confidence            4556666666666666544568899999999988732211  2257999999999998 344432210           0


Q ss_pred             --------------------------ccC-CCCCCCCCCCCCcceEEEeeee
Q 027661          194 --------------------------QDL-NLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       194 --------------------------qDL-N~~p~LPFeDnSFDaVtcsvSV  218 (220)
                                                .+. ...+..|+++++||+|+|.+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l  162 (257)
T d2a14a1         111 CELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAM  162 (257)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH
T ss_pred             HHhccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhH
Confidence                                      011 2235678999999999998765

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.8e-09  Score=84.80  Aligned_cols=70  Identities=16%  Similarity=0.015  Sum_probs=50.0

Q ss_pred             CCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCC-CCCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLN-PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~-p~LPFeDnSFDaVtcsvSV  218 (220)
                      ++.+|||||||++.   ++-.. ...+|+|+|+|+++|+ ++.++.+....+   .+.+ .++++++++||+|+|..++
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l  137 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLP-LFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  137 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTT-TCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCEEEEeccCCCHhhHHHHHh-cCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            57899999999775   45433 2368999999999998 465555432222   1222 3688999999999998765

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.69  E-value=5.8e-09  Score=82.59  Aligned_cols=81  Identities=21%  Similarity=0.262  Sum_probs=54.2

Q ss_pred             HHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhh--hccCCCC-CCCC
Q 027661          131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYV--VQDLNLN-PKLP  203 (220)
Q Consensus       131 i~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~--VqDLN~~-p~LP  203 (220)
                      +..+.+++.+...+   ++.+|||||||.+.+   |.+.  ..+|+|+|+|++||+ ++.++.+.-  +.-.+.+ -+||
T Consensus        27 ~~~~~~~~~~~~~~---~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~  101 (251)
T d1wzna1          27 IDFVEEIFKEDAKR---EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA  101 (251)
T ss_dssp             HHHHHHHHHHTCSS---CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC
T ss_pred             HHHHHHHHHHhcCC---CCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhcc
Confidence            44566666666654   467999999998777   3332  248999999999998 455554321  1112222 3678


Q ss_pred             CCCCCcceEEEeee
Q 027661          204 FEDNSFDVITNVCK  217 (220)
Q Consensus       204 FeDnSFDaVtcsvS  217 (220)
                      ++ ++||+|+|.++
T Consensus       102 ~~-~~fD~I~~~~~  114 (251)
T d1wzna1         102 FK-NEFDAVTMFFS  114 (251)
T ss_dssp             CC-SCEEEEEECSS
T ss_pred             cc-cccchHhhhhh
Confidence            87 48999999764

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=3.3e-09  Score=85.33  Aligned_cols=77  Identities=21%  Similarity=0.163  Sum_probs=50.1

Q ss_pred             HHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh----ccCCCC-CCCCCCCCC
Q 027661          138 YSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV----QDLNLN-PKLPFEDNS  208 (220)
Q Consensus       138 Y~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V----qDLN~~-p~LPFeDnS  208 (220)
                      ..+.+.-  +||++|||||||++.+   +.+.. ..+|+|+|+|+++++. +.+..+..+    .-...+ .++ ++|++
T Consensus        25 l~~~~~l--~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~~  100 (245)
T d1nkva_          25 LGRVLRM--KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANEK  100 (245)
T ss_dssp             HHHHTCC--CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSSC
T ss_pred             HHHHcCC--CCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccCc
Confidence            3445432  4699999999997765   43322 2599999999999983 444333221    111222 234 67999


Q ss_pred             cceEEEeeee
Q 027661          209 FDVITNVCKT  218 (220)
Q Consensus       209 FDaVtcsvSV  218 (220)
                      ||+|+|..++
T Consensus       101 fD~v~~~~~~  110 (245)
T d1nkva_         101 CDVAACVGAT  110 (245)
T ss_dssp             EEEEEEESCG
T ss_pred             eeEEEEEehh
Confidence            9999998664

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.65  E-value=1.2e-08  Score=81.05  Aligned_cols=70  Identities=13%  Similarity=0.096  Sum_probs=47.8

Q ss_pred             CCCeEeeeccchhhc---cCCCC--CCCcEEEecCCHHHHh-hCcCcchhh----hccCCCCCCCCCCCCCcceEEEeee
Q 027661          148 PGVSILDLCSSWVSH---FPPGY--KQDRIVGMGMNEEELK-RNPVLTEYV----VQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v--~~~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      ||++|||||||++.+   |.+..  +..+|+|+|+|++||+ +++++.++.    ++-.+.+ .++++.+.||+++|...
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d-~~~~~~~~~d~i~~~~~  117 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND-IRHVEIKNASMVILNFT  117 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSC-TTTCCCCSEEEEEEESC
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccch-hhccccccceeeEEeee
Confidence            488999999998865   33322  2359999999999999 476665432    1222222 34666778999998765


Q ss_pred             e
Q 027661          218 T  218 (220)
Q Consensus       218 V  218 (220)
                      .
T Consensus       118 l  118 (225)
T d1im8a_         118 L  118 (225)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.64  E-value=4.9e-09  Score=81.51  Aligned_cols=70  Identities=16%  Similarity=0.113  Sum_probs=48.2

Q ss_pred             HHhhCCCCCCCCCeEeeeccchhhccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCCCCCCCCCCCCcceEEEee
Q 027661          138 YSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       138 Y~~~lp~~~~pG~~VLDLccSWvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      .+..+|     +++|||||||.+..+-. +  .+++|+|+|+++++. +++--++...|.   .+||+++++||+|+|..
T Consensus        31 ~~~~~~-----~~~vLDiGcG~G~~~~~-~--~~~~giD~s~~~~~~a~~~~~~~~~~d~---~~l~~~~~~fD~I~~~~   99 (208)
T d1vlma_          31 VKCLLP-----EGRGVEIGVGTGRFAVP-L--KIKIGVEPSERMAEIARKRGVFVLKGTA---ENLPLKDESFDFALMVT   99 (208)
T ss_dssp             HHHHCC-----SSCEEEETCTTSTTHHH-H--TCCEEEESCHHHHHHHHHTTCEEEECBT---TBCCSCTTCEEEEEEES
T ss_pred             HHhhCC-----CCeEEEECCCCcccccc-c--ceEEEEeCChhhcccccccccccccccc---ccccccccccccccccc
Confidence            345555     56899999996655321 1  367999999999994 433112233333   36799999999999987


Q ss_pred             ee
Q 027661          217 KT  218 (220)
Q Consensus       217 SV  218 (220)
                      .+
T Consensus       100 ~l  101 (208)
T d1vlma_         100 TI  101 (208)
T ss_dssp             CG
T ss_pred             cc
Confidence            64

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.62  E-value=1.9e-08  Score=80.44  Aligned_cols=78  Identities=15%  Similarity=0.075  Sum_probs=48.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh--hhccCCCC-CCCCC
Q 027661          132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY--VVQDLNLN-PKLPF  204 (220)
Q Consensus       132 ~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~--~VqDLN~~-p~LPF  204 (220)
                      +.+.++..+.-+    ++.+|||||||++.|   |.+.  ..+|+|+|+|++||+ ++.++...  -++=++.+ ..+++
T Consensus        25 ~~~~~~~~~~~~----~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~   98 (246)
T d1y8ca_          25 DFIIEKCVENNL----VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHTTTC----CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC
T ss_pred             HHHHHHHHHhCC----CCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCccceeeccchhhhcc
Confidence            334444444433    367999999998877   4332  248999999999998 45544331  11112222 24555


Q ss_pred             CCCCcceEEEee
Q 027661          205 EDNSFDVITNVC  216 (220)
Q Consensus       205 eDnSFDaVtcsv  216 (220)
                       +++||+|+|.+
T Consensus        99 -~~~fD~i~~~~  109 (246)
T d1y8ca_          99 -NRKFDLITCCL  109 (246)
T ss_dssp             -SCCEEEEEECT
T ss_pred             -cccccccceee
Confidence             56899999964

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.62  E-value=6.5e-09  Score=89.14  Aligned_cols=86  Identities=20%  Similarity=0.286  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhccCCC--CCC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQDLNL--NPK  201 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqDLN~--~p~  201 (220)
                      ++|..+..++..+.+.-  +||++||||||||++   |+.+.. ..+|+|+++|+++++. +.+..+--..+.-.  ...
T Consensus        43 ~~Aq~~k~~~~~~~l~l--~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d  119 (291)
T d1kpia_          43 EEAQYAKRKLALDKLNL--EPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG  119 (291)
T ss_dssp             HHHHHHHHHHHHHTTCC--CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCC--CCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhc
Confidence            45677777777777754  579999999999995   455443 3699999999999883 44443311111000  024


Q ss_pred             CCCCCCCcceEEEee
Q 027661          202 LPFEDNSFDVITNVC  216 (220)
Q Consensus       202 LPFeDnSFDaVtcsv  216 (220)
                      .++.|++||+|++.=
T Consensus       120 ~~~~~~~fD~i~sie  134 (291)
T d1kpia_         120 WEEFDEPVDRIVSLG  134 (291)
T ss_dssp             GGGCCCCCSEEEEES
T ss_pred             ccccccccceEeech
Confidence            568899999998753

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.57  E-value=1.2e-08  Score=82.72  Aligned_cols=75  Identities=17%  Similarity=0.121  Sum_probs=51.3

Q ss_pred             HHHhhCCCCCCCCCeEeeeccchhhccCC--CCCCCcEEEecCCHHHHh-hCcCcch--------hhhccCCCCCCCCC-
Q 027661          137 YYSEVFPPSNTPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELK-RNPVLTE--------YVVQDLNLNPKLPF-  204 (220)
Q Consensus       137 lY~~~lp~~~~pG~~VLDLccSWvSHLP~--~v~~~~VVGLGmN~eELa-aN~rL~~--------~~VqDLN~~p~LPF-  204 (220)
                      +...++++    |.+|||||||++.++..  ..+.++|+|+|+|+++|+ ++.+..+        +.+.|.   ..+++ 
T Consensus        17 lI~~~~~~----~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~---~~~~~~   89 (252)
T d1ri5a_          17 LIRLYTKR----GDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS---YGRHMD   89 (252)
T ss_dssp             HHHHHCCT----TCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT---TTSCCC
T ss_pred             HHHHhCCC----cCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch---hhhccc
Confidence            45556664    88999999999987433  124468999999999998 3444332        112222   23455 


Q ss_pred             CCCCcceEEEeeee
Q 027661          205 EDNSFDVITNVCKT  218 (220)
Q Consensus       205 eDnSFDaVtcsvSV  218 (220)
                      .+.+||+|+|.+++
T Consensus        90 ~~~~fD~V~~~~~l  103 (252)
T d1ri5a_          90 LGKEFDVISSQFSF  103 (252)
T ss_dssp             CSSCEEEEEEESCG
T ss_pred             ccccceEEEEccee
Confidence            47799999998775

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.47  E-value=4.2e-08  Score=76.85  Aligned_cols=98  Identities=12%  Similarity=0.085  Sum_probs=63.7

Q ss_pred             CcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcC
Q 027661          112 PDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPV  187 (220)
Q Consensus       112 dD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~r  187 (220)
                      +|..|...+-.---..+.-++.|-+   .+-|   +||++|||+|||++.+   +...  .++|+|+|+|+++++ ++.+
T Consensus         3 ~d~~f~~~~~~~~~t~~eir~~il~---~l~~---~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n   74 (186)
T d1l3ia_           3 PDDEFIKNPSVPGPTAMEVRCLIMC---LAEP---GKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMN   74 (186)
T ss_dssp             CGGGSCCCTTSCCCCCHHHHHHHHH---HHCC---CTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHH
T ss_pred             CchhhccCCCCCCCChHHHHHHHHH---hcCC---CCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHH
Confidence            4666664443323345555555543   3333   3699999999996655   5443  369999999999999 4666


Q ss_pred             cchhhhc-c---CCCC-CCCCCCCCCcceEEEeee
Q 027661          188 LTEYVVQ-D---LNLN-PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       188 L~~~~Vq-D---LN~~-p~LPFeDnSFDaVtcsvS  217 (220)
                      +..+-+. +   .+.+ .++++++.+||+|+|...
T Consensus        75 ~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~  109 (186)
T d1l3ia_          75 LQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGS  109 (186)
T ss_dssp             HHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCC
T ss_pred             HHHcCCCcceEEEECchhhcccccCCcCEEEEeCc
Confidence            6554331 2   1222 456788899999998754

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.46  E-value=8.6e-09  Score=77.10  Aligned_cols=82  Identities=15%  Similarity=0.143  Sum_probs=53.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh----------ccCC
Q 027661          132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV----------QDLN  197 (220)
Q Consensus       132 ~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V----------qDLN  197 (220)
                      ..|.++..++-++   ||.+|||++||++.+   |.+.  .-+|+|+|+|++||+. +.+..+...          +..+
T Consensus         7 ~~~~~~~~~l~~~---~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~   81 (201)
T d1pjza_           7 KDLQQYWSSLNVV---PGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG   81 (201)
T ss_dssp             HHHHHHHHHHCCC---TTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred             HHHHHHHHHcCCC---CCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccc
Confidence            3466777777553   699999999997766   5542  3599999999999994 554433211          1111


Q ss_pred             C-----C-CCCC-CCCCCcceEEEeeee
Q 027661          198 L-----N-PKLP-FEDNSFDVITNVCKT  218 (220)
Q Consensus       198 ~-----~-p~LP-FeDnSFDaVtcsvSV  218 (220)
                      .     + ..|+ +.+.+||+|+|..+.
T Consensus        82 ~~~~~~d~~~l~~~~~~~~D~i~~~~~l  109 (201)
T d1pjza_          82 IEIWCGDFFALTARDIGHCAAFYDRAAM  109 (201)
T ss_dssp             SEEEEECCSSSTHHHHHSEEEEEEESCG
T ss_pred             cceecccccccccccccceeEEEEEeee
Confidence            1     1 2444 456889999987653

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.3e-07  Score=77.90  Aligned_cols=72  Identities=13%  Similarity=-0.020  Sum_probs=47.9

Q ss_pred             CCCCeEeeeccchhhccCCCC--CCCcEEEecCCHHHHh-hCcCcchh--------------------------------
Q 027661          147 TPGVSILDLCSSWVSHFPPGY--KQDRIVGMGMNEEELK-RNPVLTEY--------------------------------  191 (220)
Q Consensus       147 ~pG~~VLDLccSWvSHLP~~v--~~~~VVGLGmN~eELa-aN~rL~~~--------------------------------  191 (220)
                      ..|.+|||++||-+.+-.-..  ...+|+|.|+++.+++ ++..+.+-                                
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            358999999999776521111  2358999999999998 34333210                                


Q ss_pred             -----hhccCCCC---CCCCCCCCCcceEEEeeee
Q 027661          192 -----VVQDLNLN---PKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       192 -----~VqDLN~~---p~LPFeDnSFDaVtcsvSV  218 (220)
                           ...|++..   ...++++++||+|+|.+.+
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l  167 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCL  167 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCH
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHH
Confidence                 01234333   3567888999999998764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.37  E-value=5.2e-08  Score=76.02  Aligned_cols=66  Identities=15%  Similarity=0.152  Sum_probs=43.0

Q ss_pred             CeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc----CCCCCCCCCCCCCcceEEEeeee
Q 027661          150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD----LNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       150 ~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD----LN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      .+||||+||++.+   |.+.  .-+|+|+|+++++|+. +.+..+.-+..    +..-.++++ +++||+|+|...+
T Consensus        32 grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~  105 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVM  105 (198)
T ss_dssp             CEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCG
T ss_pred             CcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEEEEeeee
Confidence            4999999998766   4432  2489999999999984 33333221111    111124454 7899999997654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.36  E-value=5.9e-08  Score=82.86  Aligned_cols=87  Identities=15%  Similarity=0.224  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchhhh-ccCCCC-CC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVV-QDLNLN-PK  201 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~V-qDLN~~-p~  201 (220)
                      ++|..+.++++.+.+.-  +||++||||||||++   |+.+.. ..+|+|+.+|+++++ ++.+..+.-. ..+... ..
T Consensus        44 ~eAQ~~k~~~~~~~l~l--~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d  120 (285)
T d1kpga_          44 QEAQIAKIDLALGKLGL--QPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAG  120 (285)
T ss_dssp             HHHHHHHHHHHHTTTTC--CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESC
T ss_pred             HHHHHHHHHHHHHHcCC--CCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhh
Confidence            47888888999998875  689999999999986   456544 369999999999888 3444333110 000000 11


Q ss_pred             CCCCCCCcceEEEeee
Q 027661          202 LPFEDNSFDVITNVCK  217 (220)
Q Consensus       202 LPFeDnSFDaVtcsvS  217 (220)
                      ....+++||+|++.-.
T Consensus       121 ~~~~~~~fD~i~si~~  136 (285)
T d1kpga_         121 WEQFDEPVDRIVSIGA  136 (285)
T ss_dssp             GGGCCCCCSEEEEESC
T ss_pred             hhcccccccceeeehh
Confidence            2223478999987644

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.31  E-value=5e-08  Score=80.96  Aligned_cols=85  Identities=20%  Similarity=0.183  Sum_probs=59.3

Q ss_pred             HHHHHHHhhCCCCC-CCCCeEeeeccc---hhhccCCCCCC-CcEEEecCCHHHHhh-CcCcchh-----hhccCCCCCC
Q 027661          133 ALTKYYSEVFPPSN-TPGVSILDLCSS---WVSHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTEY-----VVQDLNLNPK  201 (220)
Q Consensus       133 ~LT~lY~~~lp~~~-~pG~~VLDLccS---WvSHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~~-----~VqDLN~~p~  201 (220)
                      +|.+.+-.-+..-+ +||++|||||||   .++||.+-+++ |+|+|+|+++++|+. ..+....     ...|.+....
T Consensus        57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~  136 (227)
T d1g8aa_          57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE  136 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG
T ss_pred             HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccc
Confidence            45554444332222 689999999999   78899887765 999999999999983 3333322     2244444456


Q ss_pred             CCCCCCCcceEEEeee
Q 027661          202 LPFEDNSFDVITNVCK  217 (220)
Q Consensus       202 LPFeDnSFDaVtcsvS  217 (220)
                      .++..++||+|.+.+.
T Consensus       137 ~~~~~~~vD~i~~d~~  152 (227)
T d1g8aa_         137 YRALVPKVDVIFEDVA  152 (227)
T ss_dssp             GTTTCCCEEEEEECCC
T ss_pred             ccccccceEEEEEEcc
Confidence            6777889999988653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.30  E-value=1e-07  Score=78.73  Aligned_cols=67  Identities=15%  Similarity=0.064  Sum_probs=47.2

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh-CcCcchh-----hhccCCCCCCCCCCCCCcceEEEe
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-----VVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-----~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +||++|||||||   +++|+.+-+..++|+|+|+++.+++. +.+..+.     +..+.+  ...++.|.+||++++.
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~--~~~~~~~~~~~v~~i~  148 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDAN--KPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTT--CGGGGTTTCCCEEEEE
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeec--cCcccccccceeEEee
Confidence            689999999999   67899876666899999999999983 4333322     111211  2335678888876654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.28  E-value=3.6e-07  Score=72.64  Aligned_cols=75  Identities=13%  Similarity=0.128  Sum_probs=47.9

Q ss_pred             HHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccCCCCC-CCCCCCCCc
Q 027661          135 TKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLNP-KLPFEDNSF  209 (220)
Q Consensus       135 T~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDLN~~p-~LPFeDnSF  209 (220)
                      .+.|.+.+.     |.+|||||||.+.+   |.+.  ..+|+|+|+|+++++ ++.++.+- ++-.+.+. .+++ +++|
T Consensus        12 ~~~~~~~~~-----~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~~~~-~~~~~~~~~~~~~-~~~f   82 (225)
T d2p7ia1          12 VRAFTPFFR-----PGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLKDG-ITYIHSRFEDAQL-PRRY   82 (225)
T ss_dssp             HHHHGGGCC-----SSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSCSC-EEEEESCGGGCCC-SSCE
T ss_pred             HHHhhhhCC-----CCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhcccccc-ccccccccccccc-cccc
Confidence            344555554     56899999996655   5543  258999999999999 34444331 11111221 2344 6899


Q ss_pred             ceEEEeeee
Q 027661          210 DVITNVCKT  218 (220)
Q Consensus       210 DaVtcsvSV  218 (220)
                      |+|+|.-.+
T Consensus        83 D~I~~~~vl   91 (225)
T d2p7ia1          83 DNIVLTHVL   91 (225)
T ss_dssp             EEEEEESCG
T ss_pred             cccccccee
Confidence            999997654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.27  E-value=9.9e-08  Score=81.34  Aligned_cols=101  Identities=10%  Similarity=0.030  Sum_probs=65.5

Q ss_pred             CCCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCC-CcEEEecCCHHHHh-
Q 027661          109 DESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEEELK-  183 (220)
Q Consensus       109 DesdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~-~~VVGLGmN~eELa-  183 (220)
                      -++.......-||-.+=|=+.-++.+..+  --+    +||++|||+|||.++.   |...+++ |+|+|+|+++++++ 
T Consensus        63 ~pt~~~~~~~~~r~tqiiypkD~s~Ii~~--l~i----~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~  136 (264)
T d1i9ga_          63 RPLLVDYVMSMPRGPQVIYPKDAAQIVHE--GDI----FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEH  136 (264)
T ss_dssp             CCCHHHHHTTSCSCSCCCCHHHHHHHHHH--TTC----CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred             CCCHHHHHhhccCCccccchHHHHHHHHH--hCC----CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHH
Confidence            34444444556665555544444444221  112    3699999999996654   6666655 89999999999999 


Q ss_pred             hCcCcchhh------hccCCCC-CCCCCCCCCcceEEEe
Q 027661          184 RNPVLTEYV------VQDLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       184 aN~rL~~~~------VqDLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      +.+++..+.      +...+.+ .+.+|+|++||+|++-
T Consensus       137 Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ld  175 (264)
T d1i9ga_         137 ARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLD  175 (264)
T ss_dssp             HHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEE
T ss_pred             HHHhhhhhccCCCceEEEEecccccccccCCCcceEEEe
Confidence            466555442      1222333 3578999999999874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.26  E-value=2e-07  Score=78.75  Aligned_cols=84  Identities=17%  Similarity=0.226  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhh----ccCCCCC
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVV----QDLNLNP  200 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~V----qDLN~~p  200 (220)
                      +|..+..++.-+.+.-  +||++||||||||+..   +.+.. ..+|+|+++|+++++ ++.+..+.-+    .....+ 
T Consensus        35 ~AQ~~k~~~~~~~l~l--~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d-  110 (280)
T d2fk8a1          35 EAQYAKVDLNLDKLDL--KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG-  110 (280)
T ss_dssp             HHHHHHHHHHHTTSCC--CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC-
T ss_pred             HHHHHHHHHHHHHcCC--CCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhh-
Confidence            4444444455555432  5799999999998875   33322 359999999999998 3554433211    111111 


Q ss_pred             CCCCCCCCcceEEEeee
Q 027661          201 KLPFEDNSFDVITNVCK  217 (220)
Q Consensus       201 ~LPFeDnSFDaVtcsvS  217 (220)
                       ....+++||+|++.-.
T Consensus       111 -~~~~~~~fD~i~si~~  126 (280)
T d2fk8a1         111 -WEDFAEPVDRIVSIEA  126 (280)
T ss_dssp             -GGGCCCCCSEEEEESC
T ss_pred             -hhhhccchhhhhHhhH
Confidence             2223579999987643

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.25  E-value=3.9e-07  Score=71.43  Aligned_cols=96  Identities=13%  Similarity=0.099  Sum_probs=60.6

Q ss_pred             CCcccCcCCCCc--cCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-h
Q 027661          111 SPDSLFYETPRF--VTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-R  184 (220)
Q Consensus       111 sdD~~FY~~PRf--VtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-a  184 (220)
                      ..+-.|+..|-.  -..+|.+.     ++--+.++.  .+|.+|||+|||++.   ++...  ..+|+|+|+|+++++ +
T Consensus        20 g~~~~~~t~~gvF~~~~~d~~t-----~lLi~~l~~--~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a   90 (194)
T d1dusa_          20 GKKLKFKTDSGVFSYGKVDKGT-----KILVENVVV--DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLA   90 (194)
T ss_dssp             TEEEEEEEETTSTTTTSCCHHH-----HHHHHHCCC--CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHH
T ss_pred             CeeEEEEcCCCccCCCCcCHHH-----HHHHHhCCc--CCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhH
Confidence            444556665543  44688653     223344554  358999999999653   45443  358999999999998 3


Q ss_pred             CcCcchhhh-----ccCCCCCCCCCCCCCcceEEEe
Q 027661          185 NPVLTEYVV-----QDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       185 N~rL~~~~V-----qDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +.++...-+     +-++.+..-++++++||.|+|.
T Consensus        91 ~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~  126 (194)
T d1dusa_          91 KENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITN  126 (194)
T ss_dssp             HHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEEC
T ss_pred             HHHHHHhCCccceEEEEEcchhhhhccCCceEEEEc
Confidence            544433222     2222233337789999999985

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=5.1e-08  Score=79.02  Aligned_cols=73  Identities=10%  Similarity=0.046  Sum_probs=51.8

Q ss_pred             CCCCeEeeeccchhhc---cCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhccC---CCC-CCCCCCCCCcceEEEeee
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQDL---NLN-PKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~VqDL---N~~-p~LPFeDnSFDaVtcsvS  217 (220)
                      +||++|||||||++..   +...++ .++|+++|.++++++. +.++......+.   ..+ .++++++++||+|+|..+
T Consensus        74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~  153 (213)
T d1dl5a1          74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG  153 (213)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhcc
Confidence            4699999999995543   444343 3699999999999994 666665433221   112 356778899999999887


Q ss_pred             ec
Q 027661          218 TH  219 (220)
Q Consensus       218 Vd  219 (220)
                      +.
T Consensus       154 ~~  155 (213)
T d1dl5a1         154 VD  155 (213)
T ss_dssp             BS
T ss_pred             HH
Confidence            64

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.23  E-value=1.9e-07  Score=75.88  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=33.2

Q ss_pred             CCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR  184 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa  184 (220)
                      +||++|||||||   ..+|+.+-++.++|+|+|+++++|+.
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~   95 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEK   95 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHH
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHH
Confidence            589999999999   55888776766899999999999983

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.17  E-value=3e-07  Score=75.74  Aligned_cols=87  Identities=13%  Similarity=0.153  Sum_probs=55.8

Q ss_pred             CCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchh-----hhcc
Q 027661          125 HIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-----VVQD  195 (220)
Q Consensus       125 HIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-----~VqD  195 (220)
                      ||-+.=+....++-+ .++.  .++.+|||++||+++   +|... .+.+|+|+|.|+++|+. +.++...     ...+
T Consensus        73 ~~~~~d~~~s~~fl~-~l~~--~~~~~vLD~GcG~G~~t~~ll~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d  148 (254)
T d1xtpa_          73 HVHDVDIEGSRNFIA-SLPG--HGTSRALDCGAGIGRITKNLLTK-LYATTDLLEPVKHMLEEAKRELAGMPVGKFILAS  148 (254)
T ss_dssp             GGHHHHHHHHHHHHH-TSTT--CCCSEEEEETCTTTHHHHHTHHH-HCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESC
T ss_pred             ccchhhHHHHHHHHh-hCCC--CCCCeEEEecccCChhhHHHHhh-cCceEEEEcCCHHHHHhhhccccccccceeEEcc
Confidence            443333433334344 4444  247799999999765   44332 13589999999999983 4444332     2222


Q ss_pred             CCCCCCCCCCCCCcceEEEeeee
Q 027661          196 LNLNPKLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       196 LN~~p~LPFeDnSFDaVtcsvSV  218 (220)
                      +   .++++++++||+|+|..++
T Consensus       149 ~---~~~~~~~~~fD~I~~~~vl  168 (254)
T d1xtpa_         149 M---ETATLPPNTYDLIVIQWTA  168 (254)
T ss_dssp             G---GGCCCCSSCEEEEEEESCG
T ss_pred             c---cccccCCCccceEEeeccc
Confidence            2   3678999999999998765

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.05  E-value=1.3e-06  Score=72.30  Aligned_cols=66  Identities=14%  Similarity=0.242  Sum_probs=45.2

Q ss_pred             CCeEeeeccchh---hccCCCCCC-CcEEEecCCHHHHhh-CcCcch------hhhccCCCCCCCCCCCCCcceEEEeee
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQ-DRIVGMGMNEEELKR-NPVLTE------YVVQDLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~-~~VVGLGmN~eELaa-N~rL~~------~~VqDLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      +.+|||+|||.+   ..+.+.+.. .+|+|+|+|+++++. +.++..      +...|..   ++||+ ++||+|+|...
T Consensus        28 ~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~---~~~~~-~~fD~v~~~~~  103 (281)
T d2gh1a1          28 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT---EIELN-DKYDIAICHAF  103 (281)
T ss_dssp             CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTT---TCCCS-SCEEEEEEESC
T ss_pred             cCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccc---ccccc-CCceEEEEehh
Confidence            679999999955   335554443 589999999999983 433322      2223433   56776 47999999876


Q ss_pred             e
Q 027661          218 T  218 (220)
Q Consensus       218 V  218 (220)
                      +
T Consensus       104 l  104 (281)
T d2gh1a1         104 L  104 (281)
T ss_dssp             G
T ss_pred             h
Confidence            4

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.2e-07  Score=75.20  Aligned_cols=86  Identities=14%  Similarity=0.049  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCC-CCcEEEecCCHHHHh-hCcCcchhhhccC---C----
Q 027661          130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELK-RNPVLTEYVVQDL---N----  197 (220)
Q Consensus       130 ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~-~~~VVGLGmN~eELa-aN~rL~~~~VqDL---N----  197 (220)
                      ..+.+.++-...+    +||++|||+|||.+.   .|..-++ .++|+|+|.++++++ +...+.+.....+   |    
T Consensus        62 ~~a~~le~L~~~l----~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~  137 (224)
T d1i1na_          62 MHAYALELLFDQL----HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV  137 (224)
T ss_dssp             HHHHHHHHTTTTS----CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE
T ss_pred             HHHHHHHHHhhcc----CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEE
Confidence            3455655444334    369999999999442   2333333 379999999999998 4666654322211   1    


Q ss_pred             -CC-CCCCCCCCCcceEEEeeeec
Q 027661          198 -LN-PKLPFEDNSFDVITNVCKTH  219 (220)
Q Consensus       198 -~~-p~LPFeDnSFDaVtcsvSVd  219 (220)
                       .+ ..+++++++||+|+|..+++
T Consensus       138 ~gD~~~~~~~~~~fD~I~~~~~~~  161 (224)
T d1i1na_         138 VGDGRMGYAEEAPYDAIHVGAAAP  161 (224)
T ss_dssp             ESCGGGCCGGGCCEEEEEECSBBS
T ss_pred             Eeecccccchhhhhhhhhhhcchh
Confidence             11 35678899999999988764

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.04  E-value=3.6e-07  Score=75.35  Aligned_cols=65  Identities=14%  Similarity=0.180  Sum_probs=42.7

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcch---------hhhccCCCC---CCCCCCCCCcceE
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTE---------YVVQDLNLN---PKLPFEDNSFDVI  212 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~---------~~VqDLN~~---p~LPFeDnSFDaV  212 (220)
                      +.+|||||||.+.+   |.+. + .+|+|+|+|++||+ ++.+..+         +.+.+.+..   ..+|+. ++||+|
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~-g-~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fd~v  133 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEE-G-FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAG-DGFDAV  133 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHT-T-CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCT-TCEEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHc-C-CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCC-CCceEE
Confidence            67999999998887   4332 2 48999999999998 3333221         112333322   244554 589999


Q ss_pred             EEee
Q 027661          213 TNVC  216 (220)
Q Consensus       213 tcsv  216 (220)
                      +|..
T Consensus       134 ~~~~  137 (292)
T d1xvaa_         134 ICLG  137 (292)
T ss_dssp             EECS
T ss_pred             EEec
Confidence            9965

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.5e-06  Score=67.98  Aligned_cols=48  Identities=15%  Similarity=0.220  Sum_probs=36.4

Q ss_pred             HHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh
Q 027661          132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       132 ~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa  183 (220)
                      ..|.+++.+.+..  .+|.+|||+|||.+.+   |.+ .+ -+|+|+|+++++++
T Consensus        31 ~~l~~~~~~~l~~--~~~~rvLd~GCG~G~~a~~LA~-~G-~~V~gvD~S~~ai~   81 (229)
T d2bzga1          31 QLLKKHLDTFLKG--KSGLRVFFPLCGKAVEMKWFAD-RG-HSVVGVEISELGIQ   81 (229)
T ss_dssp             HHHHHHHHHHHTT--CCSCEEEETTCTTCTHHHHHHH-TT-CEEEEECSCHHHHH
T ss_pred             HHHHHHHHHhcCC--CCCCEEEEeCCCCcHHHHHHHh-CC-CcEEEEeCCHHHHH
Confidence            5566777776654  3588999999997666   443 22 49999999999997

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.3e-06  Score=71.01  Aligned_cols=72  Identities=10%  Similarity=0.028  Sum_probs=46.7

Q ss_pred             CCCCeEeeeccchhhc-------cCCCCC--CCcEEEecCCHHHHhh-CcCcchh-hh-------ccCC-----CCCCCC
Q 027661          147 TPGVSILDLCSSWVSH-------FPPGYK--QDRIVGMGMNEEELKR-NPVLTEY-VV-------QDLN-----LNPKLP  203 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH-------LP~~v~--~~~VVGLGmN~eELaa-N~rL~~~-~V-------qDLN-----~~p~LP  203 (220)
                      +++.+|||+|||.+..       +.+..+  ..+++|+|.|++||+. +.++.+. ..       ++.+     .....+
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK  118 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence            3456899999997653       222111  1478999999999983 5544331 11       1111     112458


Q ss_pred             CCCCCcceEEEeeee
Q 027661          204 FEDNSFDVITNVCKT  218 (220)
Q Consensus       204 FeDnSFDaVtcsvSV  218 (220)
                      +++++||+|+|..++
T Consensus       119 ~~~~~fD~I~~~~~l  133 (280)
T d1jqea_         119 KELQKWDFIHMIQML  133 (280)
T ss_dssp             SSCCCEEEEEEESCG
T ss_pred             CCCCceeEEEEccce
Confidence            899999999998775

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.86  E-value=2.2e-06  Score=72.16  Aligned_cols=69  Identities=17%  Similarity=0.221  Sum_probs=48.7

Q ss_pred             CCCCeEeeeccchhh--c-cCCCCCC-CcEEEecCCHHHHh-hCcCcchhh----hccCCCCCCCCCCCCCcceEEEe
Q 027661          147 TPGVSILDLCSSWVS--H-FPPGYKQ-DRIVGMGMNEEELK-RNPVLTEYV----VQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccSWvS--H-LP~~v~~-~~VVGLGmN~eELa-aN~rL~~~~----VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      +||++|||+|||+++  + |...+++ ++|+++|++++.++ +..++.++.    ++-.+.+..-.+++++||+|++-
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld  161 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD  161 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeec
Confidence            579999999999663  2 4444443 79999999999999 466666542    22233333334778999999874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.84  E-value=2.7e-06  Score=71.69  Aligned_cols=103  Identities=12%  Similarity=0.001  Sum_probs=64.6

Q ss_pred             cCCCCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCC-CcEEEecCCHHHH
Q 027661          107 RFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQ-DRIVGMGMNEEEL  182 (220)
Q Consensus       107 R~DesdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~-~~VVGLGmN~eEL  182 (220)
                      -+-++.+..+-.-||-.+=|=+.-++.+..  .--+    +||++|||+|||+++   +|...+++ ++|+|+|++++++
T Consensus        68 ~~~p~~~d~~~~~~r~~qiiypkd~~~Ii~--~l~i----~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~  141 (266)
T d1o54a_          68 ILIPSLIDEIMNMKRRTQIVYPKDSSFIAM--MLDV----KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFA  141 (266)
T ss_dssp             EECCCHHHHHHTCCC-CCCCCHHHHHHHHH--HTTC----CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHH
T ss_pred             EECCCHHHHHhhccCCccccchHHHHHHHH--hhCC----CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHH
Confidence            334444444445555544444433333311  1112    369999999999774   67666654 8999999999999


Q ss_pred             h-hCcCcchhhh----ccCCCCCCCCCCCCCcceEEEe
Q 027661          183 K-RNPVLTEYVV----QDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       183 a-aN~rL~~~~V----qDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      + ++..+..+-+    .-.+.+...+|++.+||+|+.-
T Consensus       142 ~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d  179 (266)
T d1o54a_         142 KLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLD  179 (266)
T ss_dssp             HHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEEC
T ss_pred             HHHHHHHHHhccccCcEEEeccccccccccceeeeEec
Confidence            9 4666665422    2223334567889999999864

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3.3e-06  Score=67.74  Aligned_cols=66  Identities=18%  Similarity=0.114  Sum_probs=44.1

Q ss_pred             CCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchhh--hccCCCC---CCCCCCCCCcceEEE
Q 027661          148 PGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYV--VQDLNLN---PKLPFEDNSFDVITN  214 (220)
Q Consensus       148 pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~--VqDLN~~---p~LPFeDnSFDaVtc  214 (220)
                      +|.+|||||||++   .++.+. ...+|+|+|+|+++++. +.+..+..  +..+..+   ...++++++||.|++
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~-~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  127 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCeEEEeeccchHHHHHHHHc-CCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceee
Confidence            4889999999965   445443 34689999999999994 55554421  1111111   245778899998874

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=8.3e-07  Score=76.01  Aligned_cols=81  Identities=11%  Similarity=0.036  Sum_probs=51.5

Q ss_pred             HHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh-------hhccC-----
Q 027661          133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY-------VVQDL-----  196 (220)
Q Consensus       133 ~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~-------~VqDL-----  196 (220)
                      .+.+..+..=.   +||++||||||||+.+   +....+.++|+|+|+++++++ +..++.++       .....     
T Consensus       139 ~~~~~~~~~~l---~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~  215 (328)
T d1nw3a_         139 LVAQMIDEIKM---TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE  215 (328)
T ss_dssp             HHHHHHHHSCC---CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred             HHHHHHHHcCC---CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence            34444444422   4699999999998876   334445578999999999988 34444332       11111     


Q ss_pred             CCC-CCCCCCCCCcce-EEEee
Q 027661          197 NLN-PKLPFEDNSFDV-ITNVC  216 (220)
Q Consensus       197 N~~-p~LPFeDnSFDa-Vtcsv  216 (220)
                      +.+ .++||.++.||+ |+++.
T Consensus       216 ~gd~~~~~~~~~~~~advi~~~  237 (328)
T d1nw3a_         216 RGDFLSEEWRERIANTSVIFVN  237 (328)
T ss_dssp             ECCTTSHHHHHHHHHCSEEEEC
T ss_pred             ECcccccccccccCcceEEEEc
Confidence            112 367899999987 55543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.4e-06  Score=69.15  Aligned_cols=68  Identities=12%  Similarity=0.123  Sum_probs=43.8

Q ss_pred             CCCeEeeeccchhhc--cCCCCCCCcEEEecCCHHHHhhCcCcch----hhhccCCCC-CCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPVLTE----YVVQDLNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH--LP~~v~~~~VVGLGmN~eELaaN~rL~~----~~VqDLN~~-p~LPFeDnSFDaVtcs  215 (220)
                      +|.+|||||||++.-  +....+..+|+|+|.|+.+..+......    ..+.-++.+ .++++++++||+|+|-
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse  109 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISE  109 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEEC
T ss_pred             CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEe
Confidence            488999999997554  2222345699999999987642111111    112223333 4688899999999984

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.60  E-value=9.1e-06  Score=68.53  Aligned_cols=69  Identities=12%  Similarity=0.058  Sum_probs=42.1

Q ss_pred             CCCeEeeeccchhhc--cCCCCCCCcEEEecCCHHHHhhCcCcchh----hhccCCC-CCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPVLTEY----VVQDLNL-NPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH--LP~~v~~~~VVGLGmN~eELaaN~rL~~~----~VqDLN~-~p~LPFeDnSFDaVtcsv  216 (220)
                      +|.+|||||||.+..  +....+..+|+|+|.|+....++......    .+.-++. ..++++++++||.|+|..
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~  113 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEW  113 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECC
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEe
Confidence            489999999996544  32333446999999996321122211111    1111222 247889999999999853

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=5.4e-06  Score=69.75  Aligned_cols=81  Identities=12%  Similarity=0.093  Sum_probs=48.6

Q ss_pred             HHHHhhCCCC--CCCCCeEeeeccchhhc--cCCCCCCCcEEEecCCHHHHhhCcCcchh----hhccCCCC-CCCCCCC
Q 027661          136 KYYSEVFPPS--NTPGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPVLTEY----VVQDLNLN-PKLPFED  206 (220)
Q Consensus       136 ~lY~~~lp~~--~~pG~~VLDLccSWvSH--LP~~v~~~~VVGLGmN~eELaaN~rL~~~----~VqDLN~~-p~LPFeD  206 (220)
                      +.|++.|-..  -.+|.+|||||||.+..  +....+..+|+|+|.|+....+.......    .+.-++.+ ..+++++
T Consensus        19 ~~y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~   98 (316)
T d1oria_          19 LTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPV   98 (316)
T ss_dssp             HHHHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred             HHHHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHccccc
Confidence            4465554321  12588999999997554  22223446899999997654432221111    12222222 4688999


Q ss_pred             CCcceEEEee
Q 027661          207 NSFDVITNVC  216 (220)
Q Consensus       207 nSFDaVtcsv  216 (220)
                      ++||+|+|..
T Consensus        99 ~~~D~ivs~~  108 (316)
T d1oria_          99 EKVDIIISEW  108 (316)
T ss_dssp             SCEEEEEECC
T ss_pred             ceeEEEeeee
Confidence            9999999853

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.39  E-value=1.5e-05  Score=66.71  Aligned_cols=68  Identities=15%  Similarity=0.146  Sum_probs=42.9

Q ss_pred             CCCeEeeeccchhhc--cCCCCCCCcEEEecCCHHHHhh-CcCc--chhhhccCCCCCCCCCCCCCcceEEEee
Q 027661          148 PGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKR-NPVL--TEYVVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       148 pG~~VLDLccSWvSH--LP~~v~~~~VVGLGmN~eELaa-N~rL--~~~~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      ||.+|||+|||.+.-  .....+ .+|+|+|+++++++. +.+.  +..-++-++.+..-++++++||.|+|..
T Consensus       120 ~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani  192 (254)
T d2nxca1         120 PGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANL  192 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEEC
T ss_pred             ccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcc
Confidence            489999999995543  111122 589999999999983 3322  2211111222333356788999999864

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=1.8e-05  Score=68.57  Aligned_cols=99  Identities=9%  Similarity=0.099  Sum_probs=56.7

Q ss_pred             CCCcccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCC-CcEEEecCCHHHHh-h
Q 027661          110 ESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQ-DRIVGMGMNEEELK-R  184 (220)
Q Consensus       110 esdD~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~-~~VVGLGmN~eELa-a  184 (220)
                      ++.+.....-||-.+=|=..=++.+-.+ - -|    +||++|||+|||.++   +|...+++ |+|+|+|+++++++ +
T Consensus        66 Pt~~d~~~~~~r~tqiiypkD~~~Il~~-l-~i----~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A  139 (324)
T d2b25a1          66 PALEDYVVLMKRGTAITFPKDINMILSM-M-DI----NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLA  139 (324)
T ss_dssp             CCHHHHHHHSCCSSCCCCHHHHHHHHHH-H-TC----CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHH
T ss_pred             CCHHHHhhccCCCCcccccccHHHHHHH-h-CC----CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHH
Confidence            3444444556666555555444444332 1 23    359999999999654   46666654 89999999999998 4


Q ss_pred             CcCcchhhhc--------------cCCCC-CC--CCCCCCCcceEEE
Q 027661          185 NPVLTEYVVQ--------------DLNLN-PK--LPFEDNSFDVITN  214 (220)
Q Consensus       185 N~rL~~~~Vq--------------DLN~~-p~--LPFeDnSFDaVtc  214 (220)
                      ...+.++...              -.+.+ ..  -.+++.+||+|++
T Consensus       140 ~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L  186 (324)
T d2b25a1         140 KKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL  186 (324)
T ss_dssp             HHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE
T ss_pred             HHHHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee
Confidence            6666654221              01111 11  1356789999986

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=2.5e-05  Score=63.15  Aligned_cols=69  Identities=10%  Similarity=0.112  Sum_probs=46.3

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc---CCCC-CCCC--CCCCCcceEEEeee
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD---LNLN-PKLP--FEDNSFDVITNVCK  217 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~-p~LP--FeDnSFDaVtcsvS  217 (220)
                      +-.|||||||.+.   ||........++|+|+++..+.. +.+..+.-..+   ++.+ ..|+  |++++||.|.+.+.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence            4589999999554   45554445699999999999983 55444432221   2222 2344  89999999988653

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=4.1e-05  Score=61.62  Aligned_cols=72  Identities=19%  Similarity=0.147  Sum_probs=50.8

Q ss_pred             CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhh--hccCCCCC------CCCCCCCCcceEEE
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYV--VQDLNLNP------KLPFEDNSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~--VqDLN~~p------~LPFeDnSFDaVtc  214 (220)
                      +||..|||++||-+-|   +-+.++.++|+|+|.++++|+ ++.++..|-  +.-+|.+.      --.+..++||+|+.
T Consensus        22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~  101 (192)
T d1m6ya2          22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILM  101 (192)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeee
Confidence            4789999999998887   333344479999999999999 477776652  22222221      11456789999998


Q ss_pred             eeee
Q 027661          215 VCKT  218 (220)
Q Consensus       215 svSV  218 (220)
                      -.||
T Consensus       102 DlGv  105 (192)
T d1m6ya2         102 DLGV  105 (192)
T ss_dssp             ECSC
T ss_pred             ccch
Confidence            7665

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.19  E-value=4.6e-05  Score=60.91  Aligned_cols=65  Identities=12%  Similarity=0.086  Sum_probs=40.6

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhh--ccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVV--QDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~V--qDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      .|.+|||||||++.-   +. ..+..+|+|+|+|++.++ ++..+...-+  .-++.+. ..+ +..||+|+|-
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~-~~~-~~~fD~Vi~n  116 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGAL-LLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV-SEF-NSRVDIVIMN  116 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG-GGC-CCCCSEEEEC
T ss_pred             CCCEEEECcCcchHHHHHHH-HcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECch-hhh-CCcCcEEEEc
Confidence            388999999997754   22 234468999999999888 3444443321  1112221 112 5679999873

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.01  E-value=4.6e-05  Score=61.52  Aligned_cols=69  Identities=14%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhccC---CCC-CCCC--CCCCCcceEEEeee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDL---NLN-PKLP--FEDNSFDVITNVCK  217 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqDL---N~~-p~LP--FeDnSFDaVtcsvS  217 (220)
                      +-.|||||||.+.+   +........++|+|+++..+. +..+..+.-.+++   +.+ ..|+  |+++|+|.|.|.+.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence            34799999996665   444334458999999999988 3554444322221   111 1233  78999999998763

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=7.1e-05  Score=63.50  Aligned_cols=67  Identities=12%  Similarity=0.130  Sum_probs=43.4

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCCCCCCCCCCCcceEEEe
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~p~LPFeDnSFDaVtcs  215 (220)
                      +.+|||||||.+.-   +....+..+|+|.|+|++-|+ ++.....+-+++   +..+.--|+.++.||.|+|.
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN  182 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSN  182 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred             ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEec
Confidence            67999999994322   222233359999999999998 444444432222   22233336678899999884

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=96.94  E-value=0.00015  Score=59.61  Aligned_cols=71  Identities=14%  Similarity=0.158  Sum_probs=45.3

Q ss_pred             CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHhh-CcCcchh-hhccCCCCC-CCCCCCCCcceEEEeeeec
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-NPVLTEY-VVQDLNLNP-KLPFEDNSFDVITNVCKTH  219 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELaa-N~rL~~~-~VqDLN~~p-~LPFeDnSFDaVtcsvSVd  219 (220)
                      +||++|||++||++..   |..-.  ++|++++.+++..+. +.++.++ -+.-.+.+- ....++..||+|+|+.++.
T Consensus        69 ~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~  145 (224)
T d1vbfa_          69 HKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAP  145 (224)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred             cccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchh
Confidence            4699999999995422   33212  689999999999983 4444432 111112221 2234568899999988764

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=96.85  E-value=0.00022  Score=55.34  Aligned_cols=82  Identities=15%  Similarity=0.102  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc-cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh----ccCCCC---
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV----QDLNLN---  199 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH-LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V----qDLN~~---  199 (220)
                      -.+++|-+.-...+++    |.+|||+|||.+.- +.---...+|+++|.|++.++. +..+...-+    ...+.+   
T Consensus        26 ~v~e~lf~~l~~~~~~----g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~  101 (171)
T d1ws6a1          26 RLRKALFDYLRLRYPR----RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFL  101 (171)
T ss_dssp             HHHHHHHHHHHHHCTT----CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHH
T ss_pred             HHHHHHHHHhhccccC----CCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhccc
Confidence            3677777777777775    88999999996554 1100123589999999999983 444443312    111111   


Q ss_pred             CCCCCCCCCcceEEE
Q 027661          200 PKLPFEDNSFDVITN  214 (220)
Q Consensus       200 p~LPFeDnSFDaVtc  214 (220)
                      +.+...+.+||.|++
T Consensus       102 ~~~~~~~~~fD~If~  116 (171)
T d1ws6a1         102 PEAKAQGERFTVAFM  116 (171)
T ss_dssp             HHHHHTTCCEEEEEE
T ss_pred             ccccccCCccceeEE
Confidence            233456778999986

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.78  E-value=0.0002  Score=58.07  Aligned_cols=62  Identities=10%  Similarity=0.164  Sum_probs=40.7

Q ss_pred             CCCeEeeeccchhhc--cCCCCCCCcEEEecCCHHHHhh-CcCcc--hhhhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKR-NPVLT--EYVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH--LP~~v~~~~VVGLGmN~eELaa-N~rL~--~~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      .|.+|||||||++.-  .....+..+|+|+|.+++.++. +..+.  ++...|+.   ++   ++.||.|+|-
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~---~l---~~~fD~Vi~N  114 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVS---EI---SGKYDTWIMN  114 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGG---GC---CCCEEEEEEC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehh---hc---CCcceEEEeC
Confidence            388999999997643  2222344689999999999883 33332  33334442   22   3689999874

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.71  E-value=0.00018  Score=61.09  Aligned_cols=72  Identities=18%  Similarity=0.281  Sum_probs=46.9

Q ss_pred             HHhhCCCCCCCCCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHhh---CcCcchh--hhccCCCC-----CCCCC
Q 027661          138 YSEVFPPSNTPGVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELKR---NPVLTEY--VVQDLNLN-----PKLPF  204 (220)
Q Consensus       138 Y~~~lp~~~~pG~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELaa---N~rL~~~--~VqDLN~~-----p~LPF  204 (220)
                      .++.+.    +|.+|||+|||.   ..++... +..+|+|+|+|++.++.   |-+++..  .++-.+.+     ..++.
T Consensus       139 ~~~~~~----~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~  213 (324)
T d2as0a2         139 LEKWVQ----PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK  213 (324)
T ss_dssp             HGGGCC----TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHhhcC----CCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHh
Confidence            356665    489999999994   4444332 33689999999999983   4433322  11112222     24567


Q ss_pred             CCCCcceEEE
Q 027661          205 EDNSFDVITN  214 (220)
Q Consensus       205 eDnSFDaVtc  214 (220)
                      .+..||+|+|
T Consensus       214 ~~~~fD~Vi~  223 (324)
T d2as0a2         214 KGEKFDIVVL  223 (324)
T ss_dssp             TTCCEEEEEE
T ss_pred             ccCCCCchhc
Confidence            8899999997

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.65  E-value=8.5e-05  Score=60.78  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=48.8

Q ss_pred             CCCCeEeeeccc------hhhccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhcc---CCCC-CCCCCCCCCcceEEEe
Q 027661          147 TPGVSILDLCSS------WVSHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQD---LNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccS------WvSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~VqD---LN~~-p~LPFeDnSFDaVtcs  215 (220)
                      +||++|||++||      ..+++..    ++|++++.+++... ++.++.++-..+   .+.+ .....+++.||+|+++
T Consensus        77 ~~g~~VLeIGsGsGY~taila~l~g----~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~  152 (215)
T d1jg1a_          77 KPGMNILEVGTGSGWNAALISEIVK----TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVT  152 (215)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHC----SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEEC
T ss_pred             CccceEEEecCCCChhHHHHHHhhC----ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEee
Confidence            359999999999      3344432    57999999998888 577777653322   2222 2445668899999999


Q ss_pred             eeec
Q 027661          216 CKTH  219 (220)
Q Consensus       216 vSVd  219 (220)
                      .++.
T Consensus       153 ~a~~  156 (215)
T d1jg1a_         153 AGAP  156 (215)
T ss_dssp             SBBS
T ss_pred             cccc
Confidence            8875

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.63  E-value=0.00045  Score=56.34  Aligned_cols=85  Identities=20%  Similarity=0.197  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhhCCCCCCCCCeEeeeccchh------hccCC--CC-CCCcEEEecCCHHHHh-hCcCcchhhh-------
Q 027661          131 IAALTKYYSEVFPPSNTPGVSILDLCSSWV------SHFPP--GY-KQDRIVGMGMNEEELK-RNPVLTEYVV-------  193 (220)
Q Consensus       131 i~~LT~lY~~~lp~~~~pG~~VLDLccSWv------SHLP~--~v-~~~~VVGLGmN~eELa-aN~rL~~~~V-------  193 (220)
                      .+++.++-...+    +||.+|||++||.+      +++-.  .+ ...+|++++.+++.++ +..++.....       
T Consensus        67 ~a~~l~~L~~~l----~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n  142 (223)
T d1r18a_          67 HAFALEYLRDHL----KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  142 (223)
T ss_dssp             HHHHHHHTTTTC----CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhhcc----CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccE
Confidence            455555433334    35999999999933      44422  21 2268999999999888 3555443211       


Q ss_pred             -ccCCCC-CCCCCCCCCcceEEEeeeec
Q 027661          194 -QDLNLN-PKLPFEDNSFDVITNVCKTH  219 (220)
Q Consensus       194 -qDLN~~-p~LPFeDnSFDaVtcsvSVd  219 (220)
                       .-...+ .+...+++.||+|+|+.+++
T Consensus       143 v~~~~~d~~~~~~~~~~fD~Iiv~~a~~  170 (223)
T d1r18a_         143 LLIVEGDGRKGYPPNAPYNAIHVGAAAP  170 (223)
T ss_dssp             EEEEESCGGGCCGGGCSEEEEEECSCBS
T ss_pred             EEEEecccccccccccceeeEEEEeech
Confidence             111112 23445678999999998875

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=96.59  E-value=0.00017  Score=58.09  Aligned_cols=64  Identities=13%  Similarity=-0.015  Sum_probs=38.8

Q ss_pred             CCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcchh--------hhccCCCCCCCCCCCCCcceEEEee
Q 027661          149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTEY--------VVQDLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       149 G~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~~--------~VqDLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      ..+|||||||.+..   +.+.....+++|+|+ +++++ ++.++.+.        ...|+-     .....+||+|+|..
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~-----~~~~~~~D~v~~~~  154 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFF-----EPLPRKADAIILSF  154 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTT-----SCCSSCEEEEEEES
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccch-----hhcccchhheeecc
Confidence            56999999995443   444444468999998 55665 24444332        112221     12235799999876


Q ss_pred             ee
Q 027661          217 KT  218 (220)
Q Consensus       217 SV  218 (220)
                      .+
T Consensus       155 vl  156 (253)
T d1tw3a2         155 VL  156 (253)
T ss_dssp             CG
T ss_pred             cc
Confidence            54

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.00019  Score=64.21  Aligned_cols=44  Identities=14%  Similarity=0.032  Sum_probs=33.9

Q ss_pred             CCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-hCcCcch
Q 027661          147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-RNPVLTE  190 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-aN~rL~~  190 (220)
                      +||++||||||||+..   +....+.++|+|+|+++++++ ++.+..+
T Consensus       215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e  262 (406)
T d1u2za_         215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEE  262 (406)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHH
Confidence            4699999999997765   444444568999999999998 4555544

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.42  E-value=9.6e-05  Score=62.97  Aligned_cols=64  Identities=23%  Similarity=0.318  Sum_probs=42.6

Q ss_pred             CCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhcc---CCCC-----CCCCCCCCCcceEEE
Q 027661          149 GVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQD---LNLN-----PKLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~-----p~LPFeDnSFDaVtc  214 (220)
                      |.+|||||||   ...|+..  +..+|+++|+|++.|+. +..+...-+.+   +..+     ..++...+.||+|+|
T Consensus       146 g~rVLDl~~gtG~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeeeccCCCCcHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            8899999999   4445543  34699999999999983 33332221111   1122     245667889999997

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.07  E-value=0.002  Score=53.46  Aligned_cols=66  Identities=17%  Similarity=0.274  Sum_probs=43.3

Q ss_pred             CCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh---hCcCcchh--hhccCCCCC-CCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK---RNPVLTEY--VVQDLNLNP-KLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa---aN~rL~~~--~VqDLN~~p-~LPFeDnSFDaVtcs  215 (220)
                      +|.+||||+||++..   +.. .+..+|+++|+|++.++   .|-+++..  .+.-+|.+. +++ ..+.||.|++.
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~-~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~  181 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAV-YGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMG  181 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHH-HTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEEC
T ss_pred             CccEEEECcceEcHHHHHHHH-hCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEEC
Confidence            499999999996654   332 13369999999998877   25554432  233344443 333 35789999874

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=95.94  E-value=0.0014  Score=53.36  Aligned_cols=67  Identities=9%  Similarity=-0.081  Sum_probs=38.2

Q ss_pred             CCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHh-hCcCcchhhhc----cCCCCCCCCCCCCCcceEEEeee
Q 027661          149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQ----DLNLNPKLPFEDNSFDVITNVCK  217 (220)
Q Consensus       149 G~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~Vq----DLN~~p~LPFeDnSFDaVtcsvS  217 (220)
                      ..+|||||||.+.   ++.+.....+++|+|+ ++.+. ++.++.+.-+.    -...+..-|.+ ++||+|+|..-
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p-~~~D~v~~~~v  156 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP-VTADVVLLSFV  156 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS-CCEEEEEEESC
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc-ccchhhhcccc
Confidence            5699999999443   3433333359999998 55665 34444332111    11112222333 46999998753

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.0021  Score=50.09  Aligned_cols=80  Identities=13%  Similarity=0.086  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh---ccCCCC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV---QDLNLN  199 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V---qDLN~~  199 (220)
                      +.++++|-+.....+.     |.+||||+||.++-    +-.  +..+|+.+|.|.+-++. +..+....+   +-++.+
T Consensus        28 ~~vre~lfn~l~~~~~-----~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d  100 (183)
T d2fpoa1          28 DRVRETLFNWLAPVIV-----DAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSN  100 (183)
T ss_dssp             HHHHHHHHHHHHHHHT-----TCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred             HHHHHHHHhhhhcccc-----hhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccceeeeeec
Confidence            5677788777777775     78999999996654    222  34699999999999883 333433212   112222


Q ss_pred             --CCCCCCCCCcceEEE
Q 027661          200 --PKLPFEDNSFDVITN  214 (220)
Q Consensus       200 --p~LPFeDnSFDaVtc  214 (220)
                        -.|.-.+..||.|.+
T Consensus       101 ~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1         101 AMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             HHHHHSSCCCCEEEEEE
T ss_pred             ccccccccccccCEEEE
Confidence              123345678998876

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0066  Score=50.50  Aligned_cols=97  Identities=18%  Similarity=0.217  Sum_probs=62.7

Q ss_pred             ccCcCCCCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCCCCCCcEEEecCCHHHHh-h--CcC
Q 027661          114 SLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELK-R--NPV  187 (220)
Q Consensus       114 ~~FY~~PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~v~~~~VVGLGmN~eELa-a--N~r  187 (220)
                      -.|.=.|.--..+-..+-+.|.+.-.+.+..  +++.+||||+||.+..   |.+..  .+|+|++.|++.++ +  |-+
T Consensus       180 ~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~--~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~  255 (358)
T d1uwva2         180 LRLTFSPRDFIQVNAGVNQKMVARALEWLDV--QPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNAR  255 (358)
T ss_dssp             EEEECCSSSCCCSBHHHHHHHHHHHHHHHTC--CTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHH
T ss_pred             EEEEECCchhhccchhhhhHHHHHHHHhhcc--CCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHH
Confidence            3344444444455667777777776777754  3478999999995544   65533  69999999999887 2  433


Q ss_pred             cch-----hhhccCCCC-CCCCCCCCCcceEEE
Q 027661          188 LTE-----YVVQDLNLN-PKLPFEDNSFDVITN  214 (220)
Q Consensus       188 L~~-----~~VqDLN~~-p~LPFeDnSFDaVtc  214 (220)
                      ++.     +...+.... ..++...+.||+|+.
T Consensus       256 ~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vil  288 (358)
T d1uwva2         256 LNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLL  288 (358)
T ss_dssp             HTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             hcccccceeeecchhhhhhhhhhhhccCceEEe
Confidence            332     222333332 456677788999875

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.68  E-value=0.0012  Score=49.87  Aligned_cols=64  Identities=14%  Similarity=0.088  Sum_probs=40.8

Q ss_pred             CCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhh-CcCcchhhh----ccCCCCC--CCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKR-NPVLTEYVV----QDLNLNP--KLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaa-N~rL~~~~V----qDLN~~p--~LPFeDnSFDaVtc  214 (220)
                      |.+||||+||.++-    +-.  +..+|+++|.|.+.++. ...+....+    +-++.+.  -|+...++||.|++
T Consensus        15 g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~   89 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL   89 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHh--CcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEe
Confidence            88999999995543    212  33699999999998872 222222211    2233331  34566789999876

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0017  Score=53.30  Aligned_cols=64  Identities=6%  Similarity=-0.082  Sum_probs=39.2

Q ss_pred             CCCeEeeeccch-------hhccCCCCCCCcEEEecCCHHHHh-hCcCcch-----h--hh-ccCCCCC---CCCCCCCC
Q 027661          148 PGVSILDLCSSW-------VSHFPPGYKQDRIVGMGMNEEELK-RNPVLTE-----Y--VV-QDLNLNP---KLPFEDNS  208 (220)
Q Consensus       148 pG~~VLDLccSW-------vSHLP~~v~~~~VVGLGmN~eELa-aN~rL~~-----~--~V-qDLN~~p---~LPFeDnS  208 (220)
                      +..+|||||||.       ...+|.    .+|+|.|.+++.|+ ++..+..     .  ++ ++.+...   -....+.+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~----~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNG----WYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEII  136 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHC----CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCC----ccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCc
Confidence            356999999993       233443    49999999999998 3332222     1  11 2222221   12346778


Q ss_pred             cceEEEe
Q 027661          209 FDVITNV  215 (220)
Q Consensus       209 FDaVtcs  215 (220)
                      ||.|+|-
T Consensus       137 fD~ivsN  143 (250)
T d2h00a1         137 YDFCMCN  143 (250)
T ss_dssp             BSEEEEC
T ss_pred             eeEEEec
Confidence            9999983

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.51  E-value=0.0011  Score=56.30  Aligned_cols=69  Identities=17%  Similarity=0.189  Sum_probs=48.6

Q ss_pred             CCCCeEeeeccchh---hccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhcc---CCCC-CCCCCCCCCcceEEEe
Q 027661          147 TPGVSILDLCSSWV---SHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQD---LNLN-PKLPFEDNSFDVITNV  215 (220)
Q Consensus       147 ~pG~~VLDLccSWv---SHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~VqD---LN~~-p~LPFeDnSFDaVtcs  215 (220)
                      +||.+|||+||+-+   .|+.+... .+.|+..|.+++-++. ..++....+.+   ++.+ ..++..+..||.|++=
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvD  192 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD  192 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEc
Confidence            47999999999933   46654443 3799999999999985 55555543322   3333 3556778899999874

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.21  E-value=0.011  Score=44.67  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=42.6

Q ss_pred             HHHHHHhhCCCCCCCCCeEeeeccchhhc---cCCC-CCCCcEEEecCCHHHHhhCcCcchhhhccCCCCCCCCCCCCCc
Q 027661          134 LTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSF  209 (220)
Q Consensus       134 LT~lY~~~lp~~~~pG~~VLDLccSWvSH---LP~~-v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p~LPFeDnSF  209 (220)
                      |.++--+++..  .+|.+|||.|||.+.-   +.+. .....+.|.|.++..+..-.+..     .++.+.........|
T Consensus         7 i~~~m~~l~~~--~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~-----~~~~~~~~~~~~~~f   79 (223)
T d2ih2a1           7 VVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAE-----GILADFLLWEPGEAF   79 (223)
T ss_dssp             HHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEE-----EEESCGGGCCCSSCE
T ss_pred             HHHHHHHhcCC--CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccce-----eeeeehhcccccccc
Confidence            44545555554  3588999999996643   1111 11247999999987765322211     122222222344678


Q ss_pred             ceEEEe
Q 027661          210 DVITNV  215 (220)
Q Consensus       210 DaVtcs  215 (220)
                      |.+++-
T Consensus        80 d~ii~n   85 (223)
T d2ih2a1          80 DLILGN   85 (223)
T ss_dssp             EEEEEC
T ss_pred             ceeccc
Confidence            888764

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0019  Score=54.23  Aligned_cols=69  Identities=20%  Similarity=0.304  Sum_probs=45.0

Q ss_pred             CCCCeEeeeccc---hhhccCCCCC-CCcEEEecCCHHHHhh-CcCcchhhhccC---CCC-CCCCCCC---CCcceEEE
Q 027661          147 TPGVSILDLCSS---WVSHFPPGYK-QDRIVGMGMNEEELKR-NPVLTEYVVQDL---NLN-PKLPFED---NSFDVITN  214 (220)
Q Consensus       147 ~pG~~VLDLccS---WvSHLP~~v~-~~~VVGLGmN~eELaa-N~rL~~~~VqDL---N~~-p~LPFeD---nSFDaVtc  214 (220)
                      ++|.+|||+|||   -..|+.+-++ .++|+..|.|+.-++. ...+..+-+.+.   +.+ ..++-.+   ..||.|++
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~  172 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL  172 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEee
Confidence            469999999999   4566654333 3799999999998885 666665543332   222 1222222   56999987


Q ss_pred             e
Q 027661          215 V  215 (220)
Q Consensus       215 s  215 (220)
                      -
T Consensus       173 D  173 (293)
T d2b9ea1         173 D  173 (293)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.00  E-value=0.0089  Score=49.24  Aligned_cols=68  Identities=16%  Similarity=0.133  Sum_probs=40.5

Q ss_pred             CCCeEeeeccchhhccC-------C-CCCCCcEEEecCCHHHHh-h--CcCcchhhhccCCCCCCCCCCCCCcceEEEe
Q 027661          148 PGVSILDLCSSWVSHFP-------P-GYKQDRIVGMGMNEEELK-R--NPVLTEYVVQDLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       148 pG~~VLDLccSWvSHLP-------~-~v~~~~VVGLGmN~eELa-a--N~rL~~~~VqDLN~~p~LPFeDnSFDaVtcs  215 (220)
                      ++.+|||.|||.+.-+-       + .....+++|.|+|+..++ +  |-.+........+.+.-.......||+|++-
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N  195 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  195 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence            47899999999665431       1 112248999999998887 2  3222221112222222233456789999874

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.0022  Score=53.54  Aligned_cols=70  Identities=23%  Similarity=0.283  Sum_probs=44.5

Q ss_pred             CCCCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHhh-CcCcchhhhc-----cCCCCCCCCCCCCCcceEEEee
Q 027661          147 TPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR-NPVLTEYVVQ-----DLNLNPKLPFEDNSFDVITNVC  216 (220)
Q Consensus       147 ~pG~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~~Vq-----DLN~~p~LPFeDnSFDaVtcsv  216 (220)
                      ++|.+|||+|++-+   .|+.+-...++|+..|.|+.-++. ..++..+-+.     ........+.....||.|++=+
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da  179 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  179 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence            47999999999943   344443334799999999998874 5555544221     1111112234567899999743

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.31  E-value=0.006  Score=52.49  Aligned_cols=64  Identities=13%  Similarity=0.176  Sum_probs=40.0

Q ss_pred             CCeEeeeccch---hhccCCCCCCCcEEEecCCHHHHh-h--CcCcchh-------hhccCCCC-CCCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSW---VSHFPPGYKQDRIVGMGMNEEELK-R--NPVLTEY-------VVQDLNLN-PKLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSW---vSHLP~~v~~~~VVGLGmN~eELa-a--N~rL~~~-------~VqDLN~~-p~LPFeDnSFDaVtc  214 (220)
                      |.+||||+||.   ..++..  ...+|+++|.|+..|+ +  |-.++..       ++.|...- .++-...+.||+|||
T Consensus       133 ~~rVLdlf~~tG~~sl~aa~--~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil  210 (309)
T d2igta1         133 PLKVLNLFGYTGVASLVAAA--AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  210 (309)
T ss_dssp             CCEEEEETCTTCHHHHHHHH--TTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CCeEEEecCCCcHHHHHHHh--CCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence            78999999994   444433  2358999999999998 2  4444321       11221111 022234578999998

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=94.22  E-value=0.0024  Score=54.46  Aligned_cols=65  Identities=11%  Similarity=0.011  Sum_probs=39.7

Q ss_pred             CCeEeeeccchh---hccCCCCCCCcEEEecCCHHHHh---hCcCcchhh---hccCCCC-----CCCCCCCCCcceEEE
Q 027661          149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK---RNPVLTEYV---VQDLNLN-----PKLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccSWv---SHLP~~v~~~~VVGLGmN~eELa---aN~rL~~~~---VqDLN~~-----p~LPFeDnSFDaVtc  214 (220)
                      |.+|||||||.+   .|... -+..+|+++|+|+..++   .|-+++..-   +.-+..+     ..+.-+...||.|||
T Consensus       145 g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~  223 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII  223 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence            889999999944   44332 23468999999998877   244333311   1111122     122335678999997

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=92.73  E-value=0.13  Score=42.89  Aligned_cols=78  Identities=6%  Similarity=0.028  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchh------hccCCCCCCCcEEEecCCHHHHh-hCcCcchhhh------c
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV------SHFPPGYKQDRIVGMGMNEEELK-RNPVLTEYVV------Q  194 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWv------SHLP~~v~~~~VVGLGmN~eELa-aN~rL~~~~V------q  194 (220)
                      +--++.+.++....=+      ..|||+|||.+      .+.|    ..+|+|.|.|++-++ ++.....+-+      +
T Consensus        96 E~lv~~~~~~~~~~~~------~~vld~g~GsG~i~~~la~~~----~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~  165 (271)
T d1nv8a_          96 EELVELALELIRKYGI------KTVADIGTGSGAIGVSVAKFS----DAIVFATDVSSKAVEIARKNAERHGVSDRFFVR  165 (271)
T ss_dssp             HHHHHHHHHHHHHHTC------CEEEEESCTTSHHHHHHHHHS----SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             hhhhhhhhhhhccccc------cEEEEeeeeeehhhhhhhhcc----cceeeechhhhhHHHHHHHHHHHcCCCceeEEe
Confidence            4456666666554432      38999999933      2344    258999999999998 3332222211      1


Q ss_pred             cCCCCCCCCCCCCCcceEEEe
Q 027661          195 DLNLNPKLPFEDNSFDVITNV  215 (220)
Q Consensus       195 DLN~~p~LPFeDnSFDaVtcs  215 (220)
                      .-...-.++...+.||.|++-
T Consensus       166 ~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         166 KGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             ESSTTGGGGGGTTTCCEEEEC
T ss_pred             ecccccccccccCcccEEEEc
Confidence            111111233344789999873

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=92.16  E-value=0.067  Score=41.12  Aligned_cols=80  Identities=15%  Similarity=0.143  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhh-CcCcc-----hhhhccCC
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKR-NPVLT-----EYVVQDLN  197 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaa-N~rL~-----~~~VqDLN  197 (220)
                      +..+++|-+.....+.     |.+||||+||.++-    +-.  +..+|+.+|.|.+-++. +..+.     .....-.+
T Consensus        28 ~~vrealFn~l~~~~~-----~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~  100 (183)
T d2ifta1          28 DRVKETLFNWLMPYIH-----QSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVIN  100 (183)
T ss_dssp             CHHHHHHHHHHHHHHT-----TCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEEC
T ss_pred             HHHHHHHHHHhhhhcc-----cceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhccccccccccc
Confidence            4567777777776664     78999999996665    333  34699999999988762 22221     11111111


Q ss_pred             CC----CCCCCCCCCcceEEE
Q 027661          198 LN----PKLPFEDNSFDVITN  214 (220)
Q Consensus       198 ~~----p~LPFeDnSFDaVtc  214 (220)
                      .+    .+.+..+..||.|.+
T Consensus       101 ~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1         101 QSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             SCHHHHTTSCCSSCCEEEEEE
T ss_pred             ccccccccccccCCcccEEEe
Confidence            11    234555667998865

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.79  E-value=0.03  Score=44.56  Aligned_cols=90  Identities=18%  Similarity=0.231  Sum_probs=56.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccch---hhccCCCCC-CCcEEEecCCHHHHh-hCcCcchhhhc
Q 027661          120 PRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSW---VSHFPPGYK-QDRIVGMGMNEEELK-RNPVLTEYVVQ  194 (220)
Q Consensus       120 PRfVtHIDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSW---vSHLP~~v~-~~~VVGLGmN~eELa-aN~rL~~~~Vq  194 (220)
                      .++-.+|.+..-+-|..+-+..=|.      +||++||+.   ...+...+. .++|+++|++++.++ +...+...-+.
T Consensus        34 ~~~~m~i~~~~G~lL~~lv~~~kpk------~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~  107 (214)
T d2cl5a1          34 KEWAMNVGDAKGQIMDAVIREYSPS------LVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQ  107 (214)
T ss_dssp             TCCCCSCHHHHHHHHHHHHHHHCCS------EEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCG
T ss_pred             cCCccccCHHHHHHHHHHHHhhCCC------EEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCC
Confidence            3444677777777777777777664      899999872   233444333 279999999999888 34444332211


Q ss_pred             ----cCCCC-----CCC--CCCCCCcceEEEe
Q 027661          195 ----DLNLN-----PKL--PFEDNSFDVITNV  215 (220)
Q Consensus       195 ----DLN~~-----p~L--PFeDnSFDaVtcs  215 (220)
                          -+..+     ++|  .+..++||.|.+-
T Consensus       108 ~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD  139 (214)
T d2cl5a1         108 DKVTILNGASQDLIPQLKKKYDVDTLDMVFLD  139 (214)
T ss_dssp             GGEEEEESCHHHHGGGHHHHSCCCCEEEEEEC
T ss_pred             ccceeeeccccccccchhhcccccccceeeec
Confidence                11111     334  3677899999864

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.27  E-value=0.16  Score=39.26  Aligned_cols=35  Identities=9%  Similarity=0.079  Sum_probs=24.2

Q ss_pred             CCeEeeeccchhhc-------cCC----CCCCCcEEEecCCHHHHh
Q 027661          149 GVSILDLCSSWVSH-------FPP----GYKQDRIVGMGMNEEELK  183 (220)
Q Consensus       149 G~~VLDLccSWvSH-------LP~----~v~~~~VVGLGmN~eELa  183 (220)
                      --+||+.+||.+-.       +.+    .-..-+|+|.|+|+..|+
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~   70 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLE   70 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHH
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhh
Confidence            45999999995432       211    111137999999999997

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=90.89  E-value=0.058  Score=44.18  Aligned_cols=88  Identities=6%  Similarity=0.108  Sum_probs=59.2

Q ss_pred             CCCccCC--CCHHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhh---ccCCCCCCCcEEEecCCHHHHhh-CcCcchh-
Q 027661          119 TPRFVTH--IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-NPVLTEY-  191 (220)
Q Consensus       119 ~PRfVtH--IDd~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvS---HLP~~v~~~~VVGLGmN~eELaa-N~rL~~~-  191 (220)
                      ..||.+|  +|+..++++.+.    +..  +++..||++|||++.   +|.+.  ..+|++++.++++.+. +.++..+ 
T Consensus         4 ~~k~GQnFL~d~~ii~kIv~~----~~~--~~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~~~   75 (245)
T d1yuba_           4 NIKYSQNFLTSEKVLNQIIKQ----LNL--KETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKLNT   75 (245)
T ss_dssp             CCCSCCCBCCCTTTHHHHHHH----CCC--CSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTTCS
T ss_pred             CCCCCCcccCCHHHHHHHHHh----cCC--CCCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhhcc
Confidence            4788888  588888887654    222  358899999999543   34432  2589999999988874 6666543 


Q ss_pred             hhccCCCC-CCCCCCCCCcceEEE
Q 027661          192 VVQDLNLN-PKLPFEDNSFDVITN  214 (220)
Q Consensus       192 ~VqDLN~~-p~LPFeDnSFDaVtc  214 (220)
                      -+.-+|.+ .++++++..++.|+.
T Consensus        76 n~~ii~~D~l~~~~~~~~~~~vv~   99 (245)
T d1yuba_          76 RVTLIHQDILQFQFPNKQRYKIVG   99 (245)
T ss_dssp             EEEECCSCCTTTTCCCSSEEEEEE
T ss_pred             chhhhhhhhhccccccceeeeEee
Confidence            23455555 466777777765553

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.53  E-value=0.24  Score=38.04  Aligned_cols=50  Identities=22%  Similarity=0.177  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhh
Q 027661          128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKR  184 (220)
Q Consensus       128 d~ai~~LT~lY~~~lp~~~~pG~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaa  184 (220)
                      +.++++|=+.-...+     .|.+|||||||.++-    +-.  +..+|+++|.|.+-++.
T Consensus        26 ~~vrealFn~l~~~~-----~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~   79 (182)
T d2fhpa1          26 DKVKESIFNMIGPYF-----DGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKV   79 (182)
T ss_dssp             HHHHHHHHHHHCSCC-----SSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-----CCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHH
Confidence            467777755544333     389999999995544    222  33589999999998883

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.15  E-value=0.28  Score=38.33  Aligned_cols=69  Identities=20%  Similarity=0.199  Sum_probs=44.3

Q ss_pred             CCCCeEeeeccchhhc----cCCCCCCCcEEEecCCHHHHhh-CcCcchh--hhccCCCCC--CC-CCCCCCcceEEEee
Q 027661          147 TPGVSILDLCSSWVSH----FPPGYKQDRIVGMGMNEEELKR-NPVLTEY--VVQDLNLNP--KL-PFEDNSFDVITNVC  216 (220)
Q Consensus       147 ~pG~~VLDLccSWvSH----LP~~v~~~~VVGLGmN~eELaa-N~rL~~~--~VqDLN~~p--~L-PFeDnSFDaVtcsv  216 (220)
                      ++|+.++|.++|-+-|    |-.   .++|+|+|..++.++. +....++  +++.--.+.  .+ .+..+.||.|+.-.
T Consensus        17 ~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DL   93 (182)
T d1wg8a2          17 RPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADL   93 (182)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEEC
T ss_pred             CCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEc
Confidence            3699999999998888    432   4799999999999984 4333322  111111111  11 23457899999766


Q ss_pred             ee
Q 027661          217 KT  218 (220)
Q Consensus       217 SV  218 (220)
                      ||
T Consensus        94 Gv   95 (182)
T d1wg8a2          94 GV   95 (182)
T ss_dssp             SC
T ss_pred             cC
Confidence            65

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=85.72  E-value=0.35  Score=40.82  Aligned_cols=85  Identities=13%  Similarity=0.070  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCeEeeeccc---hhhccCCCCCCCcEEEecCCHHHHhhCcCcchhhhccCCCC---CCC
Q 027661          129 PAIAALTKYYSEVFPPSNTPGVSILDLCSS---WVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLN---PKL  202 (220)
Q Consensus       129 ~ai~~LT~lY~~~lp~~~~pG~~VLDLccS---WvSHLP~~v~~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~---p~L  202 (220)
                      .+...|.++-.+.+-   +|+++|+|||||   |.-.+....+-..|.|.++--. +...|.+-+....++...   ..+
T Consensus        50 R~~~Kl~~~~~~~~~---~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d-~~e~P~~~~~~~~ni~~~~~~~dv  125 (257)
T d2p41a1          50 RGSAKLRWFVERNLV---TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP-GHEEPIPMSTYGWNLVRLQSGVDV  125 (257)
T ss_dssp             THHHHHHHHHHTTSS---CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCST-TSCCCCCCCSTTGGGEEEECSCCT
T ss_pred             hHHHHHHHHHHhcCc---cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCc-cccCCccccccccccccchhhhhH
Confidence            455666666666543   357899999999   6655544332235666665322 233455544433332211   111


Q ss_pred             -CCCCCCcceEEEeee
Q 027661          203 -PFEDNSFDVITNVCK  217 (220)
Q Consensus       203 -PFeDnSFDaVtcsvS  217 (220)
                       -.++...|.|+|-.+
T Consensus       126 ~~l~~~~~D~vlcDm~  141 (257)
T d2p41a1         126 FFIPPERCDTLLCDIG  141 (257)
T ss_dssp             TTSCCCCCSEEEECCC
T ss_pred             HhcCCCcCCEEEeeCC
Confidence             235678999999654

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=84.02  E-value=0.12  Score=40.20  Aligned_cols=68  Identities=15%  Similarity=0.270  Sum_probs=38.0

Q ss_pred             CCCeEeeeccc---hhhccCCCCC-CCcEEEecCCHHHHhhCcCcchhhhccCCCCC-----CCCCCCCCcceEEEeeee
Q 027661          148 PGVSILDLCSS---WVSHFPPGYK-QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNP-----KLPFEDNSFDVITNVCKT  218 (220)
Q Consensus       148 pG~~VLDLccS---WvSHLP~~v~-~~~VVGLGmN~eELaaN~rL~~~~VqDLN~~p-----~LPFeDnSFDaVtcsvSV  218 (220)
                      ||.+||||||+   |.-.+-+.++ .+.|+|+|+++-+--.+.   .++..|++...     .--+....||.|++-.+.
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~---~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap   98 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGV---DFLQGDFRDELVMKALLERVGDSKVQVVMSDMAP   98 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTE---EEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCc---eEeecccccchhhhhhhhhccCcceeEEEecccc
Confidence            58999999999   6554333222 379999998763211111   11222332221     111245679999986554

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=80.11  E-value=0.67  Score=36.84  Aligned_cols=62  Identities=11%  Similarity=0.118  Sum_probs=36.2

Q ss_pred             CCeEeeeccc-------hhhccCCCCCCCcEEEecCCHHHHhh-CcCcchh---hhccCCCCCCCCCCCCCcceEEE
Q 027661          149 GVSILDLCSS-------WVSHFPPGYKQDRIVGMGMNEEELKR-NPVLTEY---VVQDLNLNPKLPFEDNSFDVITN  214 (220)
Q Consensus       149 G~~VLDLccS-------WvSHLP~~v~~~~VVGLGmN~eELaa-N~rL~~~---~VqDLN~~p~LPFeDnSFDaVtc  214 (220)
                      +.+|||+|||       +..++|+    .+|+.+|-+..=..- +....+-   -+.-.|...+--..+.+||+|||
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~----~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~s  138 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPE----AHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVIS  138 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTT----SEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEEC
T ss_pred             CCceeeeeccCCceeeehhhhccc----ceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehh
Confidence            5699999999       5556776    389999999765541 2111110   01111111222234678999986