Citrus Sinensis ID: 027662

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
MEVQSEVQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEYVPCHERVASKLNWEMEQLGYTQDYDINISR
ccccccccccccccEEEEccccccccHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEcccHHHHHHHHHHHccEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHcccccccccccEEEcccHHHHHHHHHHccccccccccccccHHHHccccccccccccc
ccccccEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHcccEEEEEEcHHHcHHHHccccccEEEEEccHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHcccccHHHHcEEEEcccHHHHHHHHHHcccccccccccccEHHHHccccccccccccc
MEVQSEVQLSKFKRICvfcgssqgkksSYQDAAIELGKELVSRNidlvygggsiGLMGLVSQAvhdggrhvigvipktlmpreltgetvGEVKAVADMHQRKAEMAKHSDafialpggygtLEELLEVITWAQlgihdkpvgllnVDGYYNSLLSFIDKAveegfispsarqiiVSAPTVKELVKKLEEYVPCHERVASKLNWEMEQlgytqdydinisr
mevqsevqlskfkricvfcgssqgkkssYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGvipktlmprelTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEYVPCHERVasklnwemeqlgytqdydinisr
MEVQSEVQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEYVPCHERVASKLNWEMEQLGYTQDYDINISR
*********SKFKRICVFCGS*******YQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVA***********HSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEYVPCHERVASKLNWEMEQLGYTQDYDI****
**************ICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEYVPCHERVASKLNWEMEQLGYT*********
********LSKFKRICVFCGS********QDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEYVPCHERVASKLNWEMEQLGYTQDYDINISR
******VQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEYVPCHERVASKLNWEMEQLGYTQDYDI****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEVQSEVQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLEEYVPCHERVASKLNWEMEQLGYTQDYDINISR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query220 2.2.26 [Sep-21-2011]
Q8L8B8215 Cytokinin riboside 5'-mon yes no 0.968 0.990 0.892 1e-111
Q9LFH3215 Cytokinin riboside 5'-mon no no 0.968 0.990 0.873 1e-107
Q8RUN2213 Cytokinin riboside 5'-mon no no 0.945 0.976 0.870 1e-103
B9F166244 Probable cytokinin ribosi yes no 0.977 0.881 0.816 1e-103
Q0JBP5250 Probable cytokinin ribosi yes no 0.940 0.828 0.830 1e-100
Q7XDB8204 Probable cytokinin ribosi no no 0.913 0.985 0.855 2e-97
Q8H7U8211 Probable cytokinin ribosi no no 0.913 0.952 0.820 2e-95
Q8GW29217 Cytokinin riboside 5'-mon no no 0.913 0.926 0.806 2e-93
Q9LYV8201 Probable cytokinin ribosi no no 0.854 0.935 0.851 4e-89
Q5ZC82242 Cytokinin riboside 5'-mon no no 0.845 0.768 0.795 3e-85
>sp|Q8L8B8|LOG3_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 SV=1 Back     alignment and function desciption
 Score =  400 bits (1028), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/214 (89%), Positives = 206/214 (96%), Gaps = 1/214 (0%)

Query: 1   MEVQSE-VQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGL 59
           ME++ E +Q SKF+RICVFCGSSQGKKSSYQDAA++LG ELVSRNIDLVYGGGSIGLMGL
Sbjct: 1   MEIKGESMQKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGL 60

Query: 60  VSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGY 119
           VSQAVHDGGRHVIG+IPKTLMPRELTGETVGEV+AVADMHQRKAEMAKHSDAFIALPGGY
Sbjct: 61  VSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKHSDAFIALPGGY 120

Query: 120 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT 179
           GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISP+AR+IIVSAPT
Sbjct: 121 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPT 180

Query: 180 VKELVKKLEEYVPCHERVASKLNWEMEQLGYTQD 213
            KELVKKLEEY PCHERVA+KL WEME++GY+ +
Sbjct: 181 AKELVKKLEEYAPCHERVATKLCWEMERIGYSSE 214
Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 2EC: .EC: nEC: 1
>sp|Q9LFH3|LOG4_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG4 OS=Arabidopsis thaliana GN=LOG4 PE=1 SV=1 Back     alignment and function description
>sp|Q8RUN2|LOG1_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1 OS=Arabidopsis thaliana GN=LOG1 PE=1 SV=1 Back     alignment and function description
>sp|B9F166|LOGL2_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2 OS=Oryza sativa subsp. japonica GN=LOGL2 PE=3 SV=1 Back     alignment and function description
>sp|Q0JBP5|LOGL6_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL6 OS=Oryza sativa subsp. japonica GN=LOGL6 PE=2 SV=1 Back     alignment and function description
>sp|Q7XDB8|LOGLA_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL10 OS=Oryza sativa subsp. japonica GN=LOGL10 PE=2 SV=1 Back     alignment and function description
>sp|Q8H7U8|LOGL3_ORYSJ Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL3 OS=Oryza sativa subsp. japonica GN=LOGL3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GW29|LOG7_ARATH Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 OS=Arabidopsis thaliana GN=LOG7 PE=1 SV=2 Back     alignment and function description
>sp|Q9LYV8|LOG6_ARATH Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG6 OS=Arabidopsis thaliana GN=LOG6 PE=3 SV=2 Back     alignment and function description
>sp|Q5ZC82|LOG_ORYSJ Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG OS=Oryza sativa subsp. japonica GN=LOG PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
224069464211 predicted protein [Populus trichocarpa] 0.95 0.990 0.937 1e-112
449440109213 PREDICTED: cytokinin riboside 5'-monopho 0.95 0.981 0.937 1e-112
359481376218 PREDICTED: cytokinin riboside 5'-monopho 0.986 0.995 0.898 1e-110
356572448219 PREDICTED: cytokinin riboside 5'-monopho 0.986 0.990 0.894 1e-110
224140193211 predicted protein [Populus trichocarpa] 0.945 0.985 0.932 1e-110
357510695260 hypothetical protein MTR_7g101290 [Medic 0.963 0.815 0.906 1e-109
359806146219 uncharacterized protein LOC100787375 [Gl 0.986 0.990 0.889 1e-109
30687072215 cytokinin riboside 5'-monophosphate phos 0.968 0.990 0.892 1e-109
357440413219 hypothetical protein MTR_1g064260 [Medic 0.990 0.995 0.886 1e-109
444327158215 lysine decarboxylase [Cucumis sativus] 0.918 0.939 0.950 1e-109
>gi|224069464|ref|XP_002326355.1| predicted protein [Populus trichocarpa] gi|222833548|gb|EEE72025.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/209 (93%), Positives = 205/209 (98%)

Query: 9   LSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGG 68
           LSKFKRICVFCGSSQGKK+SYQ AAI+LG ELVSRNIDLVYGGGSIGLMGLVSQAVHDGG
Sbjct: 2   LSKFKRICVFCGSSQGKKTSYQVAAIDLGNELVSRNIDLVYGGGSIGLMGLVSQAVHDGG 61

Query: 69  RHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEV 128
           RHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEV
Sbjct: 62  RHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEV 121

Query: 129 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKLE 188
           ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGF+SPSAR II+SAPT KELVKKLE
Sbjct: 122 ITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFVSPSARNIILSAPTAKELVKKLE 181

Query: 189 EYVPCHERVASKLNWEMEQLGYTQDYDIN 217
           EYVPCHERVASKL+WE+EQLGY+Q+YDI+
Sbjct: 182 EYVPCHERVASKLSWEIEQLGYSQNYDIS 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449440109|ref|XP_004137827.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359481376|ref|XP_002276279.2| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like [Vitis vinifera] gi|297741608|emb|CBI32740.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356572448|ref|XP_003554380.1| PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like [Glycine max] Back     alignment and taxonomy information
>gi|224140193|ref|XP_002323469.1| predicted protein [Populus trichocarpa] gi|222868099|gb|EEF05230.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357510695|ref|XP_003625636.1| hypothetical protein MTR_7g101290 [Medicago truncatula] gi|87240936|gb|ABD32794.1| Conserved hypothetical protein 730 [Medicago truncatula] gi|355500651|gb|AES81854.1| hypothetical protein MTR_7g101290 [Medicago truncatula] Back     alignment and taxonomy information
>gi|359806146|ref|NP_001241195.1| uncharacterized protein LOC100787375 [Glycine max] gi|255636635|gb|ACU18655.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|30687072|ref|NP_181258.2| cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Arabidopsis thaliana] gi|75272473|sp|Q8L8B8.1|LOG3_ARATH RecName: Full=Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3; AltName: Full=Protein LONELY GUY 3 gi|21805708|gb|AAM76759.1| hypothetical protein [Arabidopsis thaliana] gi|61742647|gb|AAX55144.1| hypothetical protein At2g37210 [Arabidopsis thaliana] gi|330254273|gb|AEC09367.1| cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357440413|ref|XP_003590484.1| hypothetical protein MTR_1g064260 [Medicago truncatula] gi|355479532|gb|AES60735.1| hypothetical protein MTR_1g064260 [Medicago truncatula] Back     alignment and taxonomy information
>gi|444327158|gb|AGE00883.1| lysine decarboxylase [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
TAIR|locus:2084051215 LOG4 "AT3G53450" [Arabidopsis 0.968 0.990 0.873 4.1e-97
TAIR|locus:2828223213 LOG1 "AT2G28305" [Arabidopsis 0.959 0.990 0.858 7.8e-94
TAIR|locus:2164280217 LOG7 "AT5G06300" [Arabidopsis 0.940 0.953 0.783 2.4e-85
TAIR|locus:2143473201 LOG6 "AT5G03270" [Arabidopsis 0.854 0.935 0.851 5.2e-81
TAIR|locus:2132821228 LOG5 "AT4G35190" [Arabidopsis 0.918 0.885 0.722 1e-77
UNIPROTKB|Q5ZC82242 LOG "Cytokinin riboside 5'-mon 0.845 0.768 0.795 1.3e-77
TAIR|locus:2039175213 LOG2 "AT2G35990" [Arabidopsis 0.936 0.967 0.684 3.1e-76
TAIR|locus:2143029216 LOG8 "LONELY GUY 8" [Arabidops 0.918 0.935 0.673 5.1e-74
TIGR_CMR|GSU_2766196 GSU_2766 "decarboxylase family 0.868 0.974 0.505 2.6e-47
TIGR_CMR|BA_5294192 BA_5294 "decarboxylase family 0.809 0.927 0.471 9.3e-43
TAIR|locus:2084051 LOG4 "AT3G53450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 187/214 (87%), Positives = 201/214 (93%)

Query:     1 MEVQSE-VQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGL 59
             MEV +E +Q SKF RICVFCGSSQGKKSSYQDAA++LG ELV RNIDLVYGGGSIGLMGL
Sbjct:     1 MEVNNETMQKSKFGRICVFCGSSQGKKSSYQDAAVDLGNELVLRNIDLVYGGGSIGLMGL 60

Query:    60 VSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGY 119
             VSQAVHDGGRHVIGVIPKTLMPRELTGETVGEV+AVADMHQRKAEMA+HSDAFIALPGGY
Sbjct:    61 VSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVRAVADMHQRKAEMARHSDAFIALPGGY 120

Query:   120 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT 179
             GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFIS +ARQII+SAPT
Sbjct:   121 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISTNARQIIISAPT 180

Query:   180 VKELVKKLEEYVPCHERVASKLNWEMEQLGYTQD 213
              KELVKKLEEY PCHE VA+KL WE+E++ Y+ +
Sbjct:   181 AKELVKKLEEYSPCHESVATKLCWEIERIDYSSE 214
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2828223 LOG1 "AT2G28305" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164280 LOG7 "AT5G06300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143473 LOG6 "AT5G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132821 LOG5 "AT4G35190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZC82 LOG "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2039175 LOG2 "AT2G35990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143029 LOG8 "LONELY GUY 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2766 GSU_2766 "decarboxylase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5294 BA_5294 "decarboxylase family protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XDB8LOGLA_ORYSJ3, ., 2, ., 2, ., n, 10.85570.91360.9852nono
Q8L8B8LOG3_ARATH3, ., 2, ., 2, ., n, 10.89250.96810.9906yesno
B7E7M8LOGL9_ORYSJ3, ., 2, ., 2, ., n, 10.70150.86810.8414nono
Q8RUN2LOG1_ARATH3, ., 2, ., 2, ., n, 10.87010.94540.9765nono
Q8GW29LOG7_ARATH3, ., 2, ., 2, ., n, 10.80690.91360.9262nono
Q8H7U8LOGL3_ORYSJ3, ., 2, ., 2, ., n, 10.82080.91360.9526nono
Q9LYV8LOG6_ARATH3, ., 2, ., 2, ., n, 10.85100.85450.9353nono
Q9LFH3LOG4_ARATH3, ., 2, ., 2, ., n, 10.87380.96810.9906nono
O06986YVDD_BACSUNo assigned EC number0.42130.80900.9319yesno
Q8LBB7LOG5_ARATH3, ., 2, ., 2, ., n, 10.72270.91810.8859nono
P48636Y4923_PSEAENo assigned EC number0.46960.82270.9282yesno
Q0JBP5LOGL6_ORYSJ3, ., 2, ., 2, ., n, 10.83090.94090.828yesno
B9F166LOGL2_ORYSJ3, ., 2, ., 2, ., n, 10.81650.97720.8811yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.2.n10.994
3rd Layer3.2.20.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_scaffold_28000079
hypothetical protein (211 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
pfam03641130 pfam03641, Lysine_decarbox, Possible lysine decarb 3e-68
TIGR00730178 TIGR00730, TIGR00730, TIGR00730 family protein 2e-62
COG1611205 COG1611, COG1611, Predicted Rossmann fold nucleoti 9e-53
TIGR00725159 TIGR00725, TIGR00725, TIGR00725 family protein 3e-08
>gnl|CDD|217655 pfam03641, Lysine_decarbox, Possible lysine decarboxylase Back     alignment and domain information 
 Score =  205 bits (523), Expect = 3e-68
 Identities = 72/130 (55%), Positives = 93/130 (71%)

Query: 57  MGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALP 116
           MG V+    + G  VIG+IP  L P E+    V E+  V DMH+RKA MA+ +DAF+ALP
Sbjct: 1   MGAVADGALEAGGRVIGIIPNILAPEEIPNPIVTELIIVPDMHERKAAMARLADAFVALP 60

Query: 117 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVS 176
           GG+GTLEEL E++TW QLGIH KP+ LLN +GYY+ LL FID  VEEGFISP+AR++I+ 
Sbjct: 61  GGFGTLEELFEILTWIQLGIHQKPIILLNPNGYYDPLLEFIDHMVEEGFISPAARELIIV 120

Query: 177 APTVKELVKK 186
               +E V+K
Sbjct: 121 VDDPEEAVEK 130

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. Length = 130
>gnl|CDD|129813 TIGR00730, TIGR00730, TIGR00730 family protein Back     alignment and domain information
>gnl|CDD|224527 COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|129808 TIGR00725, TIGR00725, TIGR00725 family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 220
TIGR00730178 conserved hypothetical protein, DprA/Smf-related, 100.0
COG1611205 Predicted Rossmann fold nucleotide-binding protein 100.0
TIGR00725159 conserved hypothetical protein, DprA/Smf-related, 100.0
PF03641133 Lysine_decarbox: Possible lysine decarboxylase; In 100.0
TIGR00732220 dprA DNA protecting protein DprA. Disruption of th 99.67
PF02481212 DNA_processg_A: DNA recombination-mediator protein 99.38
PRK10736374 hypothetical protein; Provisional 99.33
COG0758350 Smf Predicted Rossmann fold nucleotide-binding pro 99.11
PF12694145 MoCo_carrier: Putative molybdenum carrier; InterPr 96.56
KOG3614 1381 consensus Ca2+/Mg2+-permeable cation channels (LTR 95.28
PF05014113 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer 94.59
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 94.32
PF06908177 DUF1273: Protein of unknown function (DUF1273); In 93.96
COG3660329 Predicted nucleoside-diphosphate-sugar epimerase [ 93.41
PF06258311 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP 92.21
PF11071141 DUF2872: Protein of unknown function (DUF2872); In 92.08
PF1068671 DUF2493: Protein of unknown function (DUF2493); In 91.23
PRK10565508 putative carbohydrate kinase; Provisional 91.19
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 90.95
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 90.89
PLN02605382 monogalactosyldiacylglycerol synthase 90.31
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 90.2
cd03784401 GT1_Gtf_like This family includes the Gtfs, a grou 89.87
PRK13609380 diacylglycerol glucosyltransferase; Provisional 89.61
TIGR00661321 MJ1255 conserved hypothetical protein. This model 88.93
PRK13608391 diacylglycerol glucosyltransferase; Provisional 88.68
PRK13660182 hypothetical protein; Provisional 88.48
TIGR01426392 MGT glycosyltransferase, MGT family. This model de 87.86
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 87.31
TIGR03646144 YtoQ_fam YtoQ family protein. Members of this fami 87.29
TIGR00215385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 86.3
PRK00025380 lpxB lipid-A-disaccharide synthase; Reviewed 85.84
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 84.24
PF04101167 Glyco_tran_28_C: Glycosyltransferase family 28 C-t 84.02
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2 Back     alignment and domain information 
Probab=100.00  E-value=6e-54  Score=357.37  Aligned_cols=178  Identities=46%  Similarity=0.852  Sum_probs=170.3

Q ss_pred             ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCcee
Q 027662           13 KRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEV   92 (220)
Q Consensus        13 ~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~~~   92 (220)
                      ++|||||||+.++++.|++.|++||++||++|+.||||||..|+|++++++|+++||+|+||+|..+..++.+++.++++
T Consensus         1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~   80 (178)
T TIGR00730         1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL   80 (178)
T ss_pred             CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence            48999999999999999999999999999999999999996699999999999999999999999887677777888888


Q ss_pred             eecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccccc
Q 027662           93 KAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQ  172 (220)
Q Consensus        93 ~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~~~  172 (220)
                      +++++|++||.+|++.||+||+||||+|||+|++++|+|.|+++|+||++++|.+|||+++++|+++|+++||++++..+
T Consensus        81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~  160 (178)
T TIGR00730        81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK  160 (178)
T ss_pred             EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEcCCHHHHHHHHHhh
Q 027662          173 IIVSAPTVKELVKKLEEY  190 (220)
Q Consensus       173 ~i~~~~~~ee~~~~l~~~  190 (220)
                      .+.+++|++|++++|+++
T Consensus       161 ~~~~~d~~~e~~~~i~~~  178 (178)
T TIGR00730       161 LIHVVSRPDELIEQVQNY  178 (178)
T ss_pred             cEEEcCCHHHHHHHHHhC
Confidence            999999999999999763

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1 Back     alignment and domain information
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway Back     alignment and domain information
>TIGR00732 dprA DNA protecting protein DprA Back     alignment and domain information
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins Back     alignment and domain information
>PRK10736 hypothetical protein; Provisional Back     alignment and domain information
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion] Back     alignment and domain information
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices Back     alignment and domain information
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2 Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain Back     alignment and domain information
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins Back     alignment and domain information
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis Back     alignment and domain information
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61 Back     alignment and domain information
>PRK10565 putative carbohydrate kinase; Provisional Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PRK13660 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01426 MGT glycosyltransferase, MGT family Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>TIGR03646 YtoQ_fam YtoQ family protein Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
2a33_A215 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 1e-101
1ydh_A216 X-Ray Structure Of A Lysine Decarboxylase-Like Prot 6e-64
1t35_A191 Crystal Structure Of A Hypothetical Protein Yvdd- A 2e-36
3qua_A199 Crystal Structure Of A Putative Uncharacterized Pro 1e-30
3sbx_A189 Crystal Structure Of A Putative Uncharacterized Pro 1e-21
1wek_A217 Crystal Structure Of The Conserved Hypothetical Pro 1e-05
1rcu_A195 X-Ray Structure Of Tm1055 Northeast Structural Geno 6e-05
>pdb|2A33|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At2g37210 Length = 215 Back     alignment and structure 
Iteration: 1

 Score =  363 bits (933), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/206 (88%), Positives = 195/206 (94%)
Query: 8   QLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDG 67
           Q SKF+RICVFCGSSQGKKSSYQDAA++LG ELVSRNIDLVYGGGSIGL GLVSQAVHDG
Sbjct: 9   QKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLXGLVSQAVHDG 68
Query: 68  GRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLE 127
           GRHVIG+IPKTL PRELTGETVGEV+AVAD HQRKAE AKHSDAFIALPGGYGTLEELLE
Sbjct: 69  GRHVIGIIPKTLXPRELTGETVGEVRAVADXHQRKAEXAKHSDAFIALPGGYGTLEELLE 128
Query: 128 VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPTVKELVKKL 187
           VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISP+AR+IIVSAPT KELVKKL
Sbjct: 129 VITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKL 188
Query: 188 EEYVPCHERVASKLNWEMEQLGYTQD 213
           EEY PCHERVA+KL WE E++GY+ +
Sbjct: 189 EEYAPCHERVATKLCWEXERIGYSSE 214
>pdb|1YDH|A Chain A, X-Ray Structure Of A Lysine Decarboxylase-Like Protein From Arabidopsis Thaliana Gene At5g11950 Length = 216 Back     alignment and structure
>pdb|1T35|A Chain A, Crystal Structure Of A Hypothetical Protein Yvdd- A Putative Lysine Decarboxylase Length = 191 Back     alignment and structure
>pdb|3QUA|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein And Possible Molybdenum Cofactor Protein From Mycobacterium Smegmatis Length = 199 Back     alignment and structure
>pdb|3SBX|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Marinum Bound To Adenosine 5'-Monophosphate Amp Length = 189 Back     alignment and structure
>pdb|1WEK|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein Tt1465 From Thermus Thermophilus Hb8 Length = 217 Back     alignment and structure
>pdb|1RCU|A Chain A, X-Ray Structure Of Tm1055 Northeast Structural Genomics Consortium Target Vt76 Length = 195 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
2a33_A215 Hypothetical protein; structural genomics, protein 1e-124
1ydh_A216 AT5G11950; structural genomics, protein structure 1e-122
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 1e-111
3qua_A199 Putative uncharacterized protein; structural genom 1e-106
3sbx_A189 Putative uncharacterized protein; structural genom 1e-105
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 1e-70
1rcu_A195 Conserved hypothetical protein VT76; structural ge 5e-68
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 8e-68
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 4e-55
3gh1_A 462 Predicted nucleotide-binding protein; structural g 1e-28
3bq9_A 460 Predicted rossmann fold nucleotide-binding domain 1e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Length = 215 Back     alignment and structure
 Score =  349 bits (898), Expect = e-124
 Identities = 191/214 (89%), Positives = 206/214 (96%), Gaps = 1/214 (0%)

Query: 1   MEVQSE-VQLSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGL 59
           ME++ E +Q SKF+RICVFCGSSQGKKSSYQDAA++LG ELVSRNIDLVYGGGSIGLMGL
Sbjct: 1   MEIKGESMQKSKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGSIGLMGL 60

Query: 60  VSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALPGGY 119
           VSQAVHDGGRHVIG+IPKTLMPRELTGETVGEV+AVADMHQRKAEMAKHSDAFIALPGGY
Sbjct: 61  VSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKHSDAFIALPGGY 120

Query: 120 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSARQIIVSAPT 179
           GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISP+AR+IIVSAPT
Sbjct: 121 GTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPT 180

Query: 180 VKELVKKLEEYVPCHERVASKLNWEMEQLGYTQD 213
            KELVKKLEEY PCHERVA+KL WEME++GY+ +
Sbjct: 181 AKELVKKLEEYAPCHERVATKLCWEMERIGYSSE 214
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Length = 216 Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Length = 191 Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Length = 199 Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Length = 189 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Length = 171 Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Length = 195 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Length = 217 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Length = 176 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Length = 462 Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Length = 460 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
1ydh_A216 AT5G11950; structural genomics, protein structure 100.0
2a33_A215 Hypothetical protein; structural genomics, protein 100.0
3sbx_A189 Putative uncharacterized protein; structural genom 100.0
3qua_A199 Putative uncharacterized protein; structural genom 100.0
1t35_A191 Hypothetical protein YVDD, putative lysine decarbo 100.0
1wek_A217 Hypothetical protein TT1465; rossman fold, structu 100.0
1weh_A171 Conserved hypothetical protein TT1887; rossman fol 100.0
3gh1_A462 Predicted nucleotide-binding protein; structural g 100.0
3bq9_A460 Predicted rossmann fold nucleotide-binding domain 100.0
1rcu_A195 Conserved hypothetical protein VT76; structural ge 100.0
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 100.0
3maj_A382 DNA processing chain A; MCSG, PSI-2, structural ge 99.45
3uqz_A288 DNA processing protein DPRA; SAM and rossmann fold 99.37
2nx2_A181 Hypothetical protein YPSA; structural genomics, un 97.77
3imk_A158 Putative molybdenum carrier protein; YP_461806.1, 97.61
2khz_A165 C-MYC-responsive protein RCL; flexible loop, nucle 95.01
2f62_A161 Nucleoside 2-deoxyribosyltransferase; SGPP, struct 94.64
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 94.32
3ehd_A162 Uncharacterized conserved protein; PSI,MCSG,PF0501 94.24
4fyk_A152 Deoxyribonucleoside 5'-monophosphate N-glycosidas; 93.19
1f8y_A157 Nucleoside 2-deoxyribosyltransferase; active site, 91.49
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 90.69
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 90.28
3h4t_A404 Glycosyltransferase GTFA, glycosyltransferase; van 90.14
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 88.88
3hbm_A282 UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je 88.62
2jzc_A224 UDP-N-acetylglucosamine transferase subunit ALG13; 88.6
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 88.55
2iya_A424 OLEI, oleandomycin glycosyltransferase; carbohydra 87.94
1rrv_A416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 87.32
1iir_A415 Glycosyltransferase GTFB; rossmann fold; 1.80A {Am 86.28
1s2d_A167 Purine trans deoxyribosylase; ribosylate intermedi 85.21
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 84.97
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 84.24
3rpz_A279 ADP/ATP-dependent NAD(P)H-hydrate dehydratase; str 83.99
3ufx_B397 Succinyl-COA synthetase beta subunit; ATP-grAsp fo 81.67
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A Back     alignment and structure
Probab=100.00  E-value=5.5e-58  Score=390.83  Aligned_cols=201  Identities=67%  Similarity=1.179  Sum_probs=176.5

Q ss_pred             hcccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCC
Q 027662            9 LSKFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGET   88 (220)
Q Consensus         9 ~~~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~   88 (220)
                      .++|++|||||||+.+.++.|++.|++||++||++|+.||||||+.|+|+|+++||+++||+||||+|+.+.+.|..++.
T Consensus         6 ~~~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~~~~   85 (216)
T 1ydh_A            6 RSRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGET   85 (216)
T ss_dssp             CCSCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSSC
T ss_pred             CCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCcccHhHHHHHHHHHcCCcEEEEechhcCccccccCC
Confidence            45677899999999988899999999999999999999999999779999999999999999999999988888888899


Q ss_pred             CceeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCc
Q 027662           89 VGEVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISP  168 (220)
Q Consensus        89 ~~~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~  168 (220)
                      +++++++++|++||.+|+++||+||+||||+|||+|+||+|||.|+++|+|||+|+|.+|||+++++|+++|+++|||++
T Consensus        86 ~~~~~~~~~~~~Rk~~~~~~sda~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~  165 (216)
T 1ydh_A           86 VGDVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKP  165 (216)
T ss_dssp             CSEEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCH
T ss_pred             CCcccccCCHHHHHHHHHHhCCEEEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccEEEcCCHHHHHHHHHhhcCCcccccccccccccccc
Q 027662          169 SARQIIVSAPTVKELVKKLEEYVPCHERVASKLNWEMEQLG  209 (220)
Q Consensus       169 ~~~~~i~~~~~~ee~~~~l~~~~~~~~~~~~~~~w~~~~~~  209 (220)
                      ++.+++.+++|++|+++.|+++.+.+.+...+++|..++++
T Consensus       166 ~~~~~~~~~d~~ee~~~~l~~~~~~~~~~~~~~~~~~~~~~  206 (216)
T 1ydh_A          166 GARNIVVSAPTAKELMEKMEEYTPSHMHVASHESWKVEELG  206 (216)
T ss_dssp             HHHTTEEEESSHHHHHHHHHHCC------------------
T ss_pred             HHcCeEEEeCCHHHHHHHHHHhcccccccccccccchhhcc
Confidence            99999999999999999999999888888889999988754
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A Back     alignment and structure
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M} Back     alignment and structure
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str} Back     alignment and structure
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1 Back     alignment and structure
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1 Back     alignment and structure
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A Back     alignment and structure
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica} Back     alignment and structure
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1 Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Back     alignment and structure
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Back     alignment and structure
>3uqz_A DNA processing protein DPRA; SAM and rossmann fold, DNA processing protein A, DNA binding; HET: DNA SO4; 2.70A {Streptococcus pneumoniae} Back     alignment and structure
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2 Back     alignment and structure
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB} Back     alignment and structure
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A* Back     alignment and structure
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A* Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis} Back     alignment and structure
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A* Back     alignment and structure
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A* Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Back     alignment and structure
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A* Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3rpz_A ADP/ATP-dependent NAD(P)H-hydrate dehydratase; structural genomics, PSI-biology; HET: AMP NPW; 1.51A {Bacillus subtilis} PDB: 3rph_A* 3rq2_A* 3rq5_A* 3rq6_A* 3rq8_A* 3rqh_A* 3rqq_A* 3rqx_A* 1kyh_A Back     alignment and structure
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 220
d2q4oa1183 c.129.1.1 (A:8-190) Hypothetical protein At2g37210 3e-61
d1ydhb_181 c.129.1.1 (B:) Hypothetical protein At5g11950 {Tha 5e-60
d1t35a_179 c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus 2e-56
d1rcua_170 c.129.1.1 (A:) Hypothetical protein TM1055 {Thermo 3e-39
d1weka_208 c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA16 4e-39
d1weha_171 c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA02 1e-35
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 181 Back     information, alignment and structure
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Length = 170 Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Length = 208 Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
d1ydhb_181 Hypothetical protein At5g11950 {Thale cress (Arabi 100.0
d2q4oa1183 Hypothetical protein At2g37210/T2N18.3 {Thale cres 100.0
d1t35a_179 Hypothetical protein YvdD {Bacillus subtilis [TaxI 100.0
d1weka_208 Hypothetical protein TT1465 (TTHA1644) {Thermus th 100.0
d1weha_171 Hypothetical protein TT1887 (TTHA0294) {Thermus th 100.0
d1rcua_170 Hypothetical protein TM1055 {Thermotoga maritima [ 100.0
d2nx2a1177 Hypothetical protein YpsA {Bacillus subtilis [TaxI 96.79
d1s2da_167 Purine transdeoxyribosylase {Lactobacillus helveti 93.82
d1f8ya_156 Nucleoside 2-deoxyribosyltransferase {Lactobacillu 92.47
d2f62a1152 Nucleoside 2-deoxyribosyltransferase {Trypanosoma 88.47
d1rrva_401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 85.93
d1kyha_275 Hypothetical protein YxkO {Bacillus subtilis [TaxI 82.89
d1iira_401 UDP-glucosyltransferase GtfB {Amycolatopsis orient 82.54
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2e-56  Score=369.83  Aligned_cols=180  Identities=69%  Similarity=1.220  Sum_probs=174.9

Q ss_pred             ccceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcChHHHHHHHHHhcCCeEEEEeCCcccCCCCCCCCCc
Q 027662           11 KFKRICVFCGSSQGKKSSYQDAAIELGKELVSRNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVG   90 (220)
Q Consensus        11 ~~~~I~V~ggS~~~~~~~~~~~A~~lG~~LA~~G~~lv~GGg~~GlM~a~a~gA~~~GG~viGi~P~~~~~~e~~~~~~~   90 (220)
                      ||++|||||||+.++++.|++.|++||+.||++||.||||||+.|+|+|+++||+++||+|+||+|..+.+.+..++.++
T Consensus         1 ~~k~v~Vf~gs~~~~~~~~~~~a~~lg~~La~~g~~lv~GGG~~GlMga~a~ga~~~gg~viGv~~~~l~~~e~~~~~~~   80 (181)
T d1ydhb_           1 RFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVG   80 (181)
T ss_dssp             CCSEEEEECCSCCCSSTHHHHHHHHHHHHHHHTTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSCCCS
T ss_pred             CCcEEEEEccCCCCcCCHHHHHHHHHHHHHHHCCCeEEECCCchHHHHHHHHhHhhcCCcccccchhhhhhhhcCCcccC
Confidence            68899999999999999999999999999999999999999999999999999999999999999998888888888899


Q ss_pred             eeeecCCHHHHHHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHhCCCCCcEEEEeCCCcchHHHHHHHHHHHcCCCCccc
Q 027662           91 EVKAVADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPSA  170 (220)
Q Consensus        91 ~~~~~~~m~~Rk~~m~~~sDa~VvlpGG~GTL~El~~~~~~~qlg~~~kPiill~~~g~w~~l~~~l~~~~~~g~i~~~~  170 (220)
                      +++.+++|++||..|++.|||||+||||+|||+|++++|+|.|++.|+||++++|.+|||+++++|+++++++||+++++
T Consensus        81 ~~~~~~~~~~Rk~~m~~~sdafIvlPGG~GTLdEl~e~l~l~ql~~~~kpiiiln~~gfw~~l~~~l~~~~~~g~i~~~~  160 (181)
T d1ydhb_          81 DVRVVADMHERKAAMAQEAEAFIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGA  160 (181)
T ss_dssp             EEEEESSHHHHHHHHHHHCSEEEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHHTSSCHHH
T ss_pred             cceeeccHHHHHHHHHHhCeeEEEeCCccchHHHHHHHHHHHHhcccCCCeEEEecCccHHHHHHHHHHHHHCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEcCCHHHHHHHHHhh
Q 027662          171 RQIIVSAPTVKELVKKLEEY  190 (220)
Q Consensus       171 ~~~i~~~~~~ee~~~~l~~~  190 (220)
                      .+.+.+++||+|++++|++|
T Consensus       161 ~~~~~~~d~~ee~~~~l~~~  180 (181)
T d1ydhb_         161 RNIVVSAPTAKELMEKMEEY  180 (181)
T ss_dssp             HTTEEEESSHHHHHHHHHHC
T ss_pred             cCeEEEeCCHHHHHHHHHhh
Confidence            99999999999999999886
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1weka_ c.129.1.1 (A:) Hypothetical protein TT1465 (TTHA1644) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1weha_ c.129.1.1 (A:) Hypothetical protein TT1887 (TTHA0294) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rcua_ c.129.1.1 (A:) Hypothetical protein TM1055 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2nx2a1 c.129.1.2 (A:1-177) Hypothetical protein YpsA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]} Back     information, alignment and structure
>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]} Back     information, alignment and structure
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1kyha_ c.72.1.4 (A:) Hypothetical protein YxkO {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure