Citrus Sinensis ID: 027664

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Secondary Structure (PSIPRED)
cEEcccEEEEcccccccccccccccccccccHHHHHccccccccEEEEEEcccHHHHHHHHHHHcccEEEEEccccccHHHHHHHccccEEEEcccHHHHHHHHccccEEEEcccccccHHHHHHcHHcccEEEEEccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEccccccHHHHHHHHcHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHccccEEEEcccccHHHHHHccccEEEEcccccccHHHHHHHHcccccEEEEcccccccccccHHHEcccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHcccEEEEEEEcHHcccccc
Coil and Loop (DISEMBL)
mvadehfvvripegapldatapllcagitvysplrfygldkpgmhvgvvGLGGLGHVAVKFAKAMGVKVTVistspskkseAVERLgadsflvsrDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGklvllgapekplelpafplltgrkivggsligglkETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Flexible Loop (DISEMBL)
mvadehfvvripegapldatapLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTvistspskkseaverlgadsflvsRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Low Complexity Region (SEG)
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMhvgvvglgglghvavKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Disordered region (IsUnstruct)
*****HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVI*******************************MGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA*******
Disordered Region (DISOPRED)
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID**NT*****
Disordered Region (DISEMBL)
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Disordered Region (DISPRO)
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q9ZRF1	359	Probable mannitol dehydro	N/A	no	0.986	0.604	0.829	4e-94
P42754	337	Mannitol dehydrogenase (F	N/A	no	0.990	0.646	0.770	2e-89
Q6V4H0	360	8-hydroxygeraniol dehydro	N/A	no	0.990	0.605	0.770	4e-88
P93257	361	Probable mannitol dehydro	N/A	no	0.990	0.603	0.761	7e-86
Q02971	357	Cinnamyl alcohol dehydrog	yes	no	1.0	0.616	0.759	1e-84
Q38707	365	Mannitol dehydrogenase OS	N/A	no	0.990	0.597	0.701	3e-83
Q2KNL6	360	Geraniol dehydrogenase 1	N/A	no	0.986	0.602	0.709	2e-82
Q02972	359	Cinnamyl alcohol dehydrog	no	no	1.0	0.612	0.754	3e-81
P42734	360	Probable cinnamyl alcohol	no	no	0.981	0.6	0.685	8e-78
Q43138	363	Probable mannitol dehydro	N/A	no	0.990	0.600	0.714	5e-77

>sp|Q9ZRF1|MTDH_FRAAN Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1

 Score =  343 bits (881), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 180/217 (82%), Positives = 198/217 (91%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHF+VRIP+  PLD  APLLCAGIT YSPLR++GLDKPGMHVGVVGLGGLGHVAVK
Sbjct: 140 MVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGMHVGVVGLGGLGHVAVK 199

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMGVKVTVISTSP K+ EA++ LGADSFLVSRDQD+MQAA+GTMDGIIDTVSA HPL
Sbjct: 200 FAKAMGVKVTVISTSPKKEEEALKHLGADSFLVSRDQDQMQAAIGTMDGIIDTVSAQHPL 259

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLIGLL S GKLV++GAPEKPLELP FPLL GRK+V GS IGG+KETQEMIDFAA+HNI
Sbjct: 260 LPLIGLLNSHGKLVMVGAPEKPLELPVFPLLMGRKMVAGSGIGGMKETQEMIDFAARHNI 319

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVIP DY+NTAMERL KADVRYRFVID+ NT+K
Sbjct: 320 TADIEVIPIDYLNTAMERLVKADVRYRFVIDIGNTLK 356

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.
Fragaria ananassa (taxid: 3747)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5EC: 5

>sp|P42754|MTDH_PETCR Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1

 Score =  328 bits (841), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 168/218 (77%), Positives = 191/218 (87%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVAD+HFV+R PE  PLD+ APLLCAGIT YSPLR++GLDKPG  VGVVGLGGLGHVAVK
Sbjct: 119 MVADQHFVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDKPGTKVGVVGLGGLGHVAVK 178

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            AKA G  VTVISTS SKK EA+E+LGAD FLVS D D+MQAA GT+ GIIDTVSA+HP+
Sbjct: 179 MAKAFGAHVTVISTSESKKQEALEKLGADEFLVSSDSDQMQAATGTLHGIIDTVSALHPV 238

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+GLLK  GKLV++GAPEKPLELP FPLL GRK++ GS IGGLKETQEM+DFAA+HNI
Sbjct: 239 VPLLGLLKVNGKLVMVGAPEKPLELPVFPLLMGRKVLAGSNIGGLKETQEMLDFAAQHNI 298

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
            AD+EVIP DYVNTAMERL K+DVRYRFVIDVANT+K+
Sbjct: 299 TADVEVIPVDYVNTAMERLVKSDVRYRFVIDVANTIKT 336

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.

Petroselinum crispum (taxid: 4043)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q6V4H0|10HGO_CATRO 8-hydroxygeraniol dehydrogenase OS=Catharanthus roseus GN=10HGO PE=1 SV=1

 Score =  324 bits (830), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 168/218 (77%), Positives = 194/218 (88%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHFV+R PE  P+D  APLLCAGIT YSPLR++GLDKPG HVGVVGLGGLGHVAVK
Sbjct: 142 MVADEHFVIRWPENLPMDIGAPLLCAGITTYSPLRYFGLDKPGTHVGVVGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KVTVISTS SKK EA+E+LGADSFLVSRD ++M+AA  ++DGIIDTVSA+HP+
Sbjct: 202 FAKAFGAKVTVISTSESKKQEALEKLGADSFLVSRDPEQMKAAAASLDGIIDTVSAIHPI 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           MPL+ +LKS GKL+L+GAPEKPLELP+FPL+ GRKI+ GS IGGLKETQEMIDFAAKHN+
Sbjct: 262 MPLLSILKSHGKLILVGAPEKPLELPSFPLIAGRKIIAGSAIGGLKETQEMIDFAAKHNV 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
             D+E++  DYVNTAMERL KADV+YRFVIDVANT+KS
Sbjct: 322 LPDVELVSMDYVNTAMERLLKADVKYRFVIDVANTLKS 359

Dehydrogenase involved in the biosynthesis of oxogeranial from hydroxygeraniol, a precursor of the terpenoid indole alkaloids such as vinblastine and vincristine.

Catharanthus roseus (taxid: 4058)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 2

EC: 4

>sp|P93257|MTDH_MESCR Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1

 Score =  316 bits (810), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 166/218 (76%), Positives = 196/218 (89%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV +EHF VRIP+   LDATAPLLCAG+TVYSPL+ + LDKPG+H+GVVGLGGLGH+AVK
Sbjct: 143 MVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           F KA G KVTVISTSP+KK EAV RLGADSF+VSR+ ++MQ+AMGT+DGIIDTVSA HPL
Sbjct: 203 FGKAFGAKVTVISTSPNKKDEAVNRLGADSFVVSREPEQMQSAMGTLDGIIDTVSAAHPL 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+GLLKSQGK++++G P+KPLELP FPLL GRKI+ GS IGG+KETQEMIDFAAKH+I
Sbjct: 263 LPLLGLLKSQGKMIMVGVPDKPLELPVFPLLQGRKILAGSCIGGMKETQEMIDFAAKHDI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
           ++DIEV+P DYVNTAMERL K DVRYRFVIDVANT+K+
Sbjct: 323 KSDIEVVPMDYVNTAMERLLKGDVRYRFVIDVANTLKA 360

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q02971|CADH7_ARATH Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2

 Score =  312 bits (799), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/220 (75%), Positives = 195/220 (88%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV  E F++RIP+  PLD  APLLCAG+TVYSP++++GLDKPGMH+GVVGLGGLGHVAVK
Sbjct: 138 MVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVAVK 197

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMG KVTVISTS  K+ EAV RLGAD+FLVSRD  +M+ AMGTMDGIIDTVSA HPL
Sbjct: 198 FAKAMGTKVTVISTSERKRDEAVTRLGADAFLVSRDPKQMKDAMGTMDGIIDTVSATHPL 257

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+GLLK++GKLV++GAP +PLELP FPL+ GRK+V GS++GG+KETQEM+D A KHNI
Sbjct: 258 LPLLGLLKNKGKLVMVGAPAEPLELPVFPLIFGRKMVVGSMVGGIKETQEMVDLAGKHNI 317

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
            ADIE+I ADYVNTAMERLAKADV+YRFVIDVANTMK TP
Sbjct: 318 TADIELISADYVNTAMERLAKADVKYRFVIDVANTMKPTP 357

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|Q38707|MTDH_APIGR Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1

 Score =  308 bits (788), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 153/218 (70%), Positives = 184/218 (84%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHF++R P+  PLD+ APLLCAGIT YSPL++YGLDKPG  +GVVGLGGLGHVAVK
Sbjct: 142 MVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKPGTKIGVVGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            AKA G +VTVI  S SK+ EA+E+LGADSFL++ DQ++M+ A  ++DGIIDTV   HPL
Sbjct: 202 MAKAFGAQVTVIDISESKRKEALEKLGADSFLLNSDQEQMKGARSSLDGIIDTVPVNHPL 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
            PL  LLK  GKLV++GAPEKP ELP F LL GRK++GG++ GG+KETQEM+DFAAKHNI
Sbjct: 262 APLFDLLKPNGKLVMVGAPEKPFELPVFSLLKGRKLLGGTINGGIKETQEMLDFAAKHNI 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
            AD+EVIP DYVNTAMERL K+DVRYRFVID+ANTM++
Sbjct: 322 TADVEVIPMDYVNTAMERLVKSDVRYRFVIDIANTMRT 359

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.

Apium graveolens (taxid: 4045)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q2KNL6|GEDH1_OCIBA Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1

 Score =  304 bits (779), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/217 (70%), Positives = 185/217 (85%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHF++R PE  PLDA APLLCAGIT YSPL+++GLDKPG+ VGV GLGGLGHVAVK
Sbjct: 142 MVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KVTVISTS SKK EA++ LG D F+VS D  +MQAA+GT+DGIIDTVSA HP+
Sbjct: 202 FAKAFGTKVTVISTSLSKKEEAMQHLGVDEFVVSTDPQQMQAAVGTLDGIIDTVSAPHPI 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+ LLK  GKL+++G P+KPL+LP FPL+ GR+ + GS IGGLKETQEMIDFAAK+NI
Sbjct: 262 VPLLSLLKPHGKLIVVGLPDKPLQLPVFPLIQGRRTIAGSGIGGLKETQEMIDFAAKNNI 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            AD+EVIP DY+NTAM+RL K+DV+YRFVIDV  ++K
Sbjct: 322 VADVEVIPIDYINTAMDRLLKSDVKYRFVIDVEKSLK 358

Involved in the production of citral, a mixture of geranial and neral with a strong lemony scent. Reversibly oxidizes geraniol and nerol in equal efficiency. Also active, although at a lower efficiency, with cinnamyl alcohol.

Ocimum basilicum (taxid: 39350)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

>sp|Q02972|CADH8_ARATH Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1

 Score =  301 bits (770), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 166/220 (75%), Positives = 191/220 (86%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV +E FV+RIP+  PLDA APLLCAGITVYSP++++GLDKPGMH+GVVGLGGLGHV VK
Sbjct: 138 MVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVK 197

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMG KVTVISTS  K+ EA+ RLGAD+FLVSRD  +++ AMGTMDGIIDTVSA H L
Sbjct: 198 FAKAMGTKVTVISTSEKKRDEAINRLGADAFLVSRDPKQIKDAMGTMDGIIDTVSATHSL 257

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+GLLK +GKLV++GAPEKPLELP  PL+  RK+V GS+IGG+KETQEMID A KHNI
Sbjct: 258 LPLLGLLKHKGKLVMVGAPEKPLELPVMPLIFERKMVMGSMIGGIKETQEMIDMAGKHNI 317

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
            ADIE+I ADYVNTAMERL KADVRYRFVIDVANT+K  P
Sbjct: 318 TADIELISADYVNTAMERLEKADVRYRFVIDVANTLKPNP 357

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|P42734|CADH9_ARATH Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=2 SV=2

 Score =  289 bits (740), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 148/216 (68%), Positives = 179/216 (82%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V D+ FV+R PE  P D+ APLLCAGITVYSP+++YG+ + G H+GV GLGGLGHVAVK
Sbjct: 142 IVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             KA G+KVTVIS+S +K  EA+  LGADSFLV+ D  +M+AA+GTMD IIDT+SAVH L
Sbjct: 202 IGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQKMKAAIGTMDYIIDTISAVHAL 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
            PL+GLLK  GKL+ LG PEKPLELP FPL+ GRK+VGGS +GG+KETQEM+DF AKHNI
Sbjct: 262 YPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGGSDVGGMKETQEMLDFCAKHNI 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
            ADIE+I  D +NTAMERLAK+DVRYRFVIDVAN++
Sbjct: 322 TADIELIKMDEINTAMERLAKSDVRYRFVIDVANSL 357

Involved in lignin biosynthesis. May catalyze the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|Q43138|MTDH3_STYHU Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1

 Score =  286 bits (733), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 158/221 (71%), Positives = 188/221 (85%), Gaps = 3/221 (1%)

Query: 1   MVADEHFVVRIPEGAPLDAT-APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAV 59
           MV DEHFV RIPEG PLD   +  LC G + +SPL++YGLDKPG+HVGVVGLGGLGH+  
Sbjct: 143 MVVDEHFVTRIPEGLPLDGCGSSSLCWGYS-HSPLKYYGLDKPGLHVGVVGLGGLGHMVA 201

Query: 60  KFAKAMGVKVTVISTSP-SKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH 118
           KFAK  G+K+TVISTSP +KK EA++ LGADSFLVSRD D+M+A   T+DGIIDTVSA H
Sbjct: 202 KFAKTHGLKITVISTSPPTKKEEAIKNLGADSFLVSRDPDQMEAPKETLDGIIDTVSADH 261

Query: 119 PLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
            ++PLIGLLKS GKLVL+GA EKPLELP FPL+ GRK+VGG+L+GGLKETQEMIDF+ KH
Sbjct: 262 SIVPLIGLLKSHGKLVLIGAIEKPLELPPFPLILGRKLVGGTLVGGLKETQEMIDFSPKH 321

Query: 179 NIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 219
           N++ +IEV+P DYVN AM+RLAKADV+YRFVIDVANT+K T
Sbjct: 322 NVKPEIEVVPMDYVNIAMQRLAKADVKYRFVIDVANTLKPT 362

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.

Stylosanthes humilis (taxid: 35628)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
356560957	344	PREDICTED: probable mannitol dehydrogena	0.986	0.630	0.783	7e-98
224138226	362	cinnamyl alcohol dehydrogenase-like prot	0.986	0.599	0.847	8e-98
118489566	362	unknown [Populus trichocarpa x Populus d	0.986	0.599	0.847	2e-97
255587709	362	alcohol dehydrogenase, putative [Ricinus	0.986	0.599	0.843	2e-97
255587478	359	alcohol dehydrogenase, putative [Ricinus	0.990	0.607	0.830	3e-97
224104051	360	cinnamyl alcohol dehydrogenase-like prot	0.986	0.602	0.857	1e-95
307634614	360	cinnamyl alcohol dehydrogenase [Salvia m	0.995	0.608	0.803	2e-95
224144875	360	cinnamyl alcohol dehydrogenase-like prot	0.986	0.602	0.847	4e-95
224104043	360	cinnamyl alcohol dehydrogenase-like prot	0.986	0.602	0.847	5e-95
332384183	361	cinnamyl alcohol dehydrogenase 3 [Camell	0.986	0.601	0.824	5e-94

>gi|356560957|ref|XP_003548752.1| PREDICTED: probable mannitol dehydrogenase-like [Glycine max]

 Score =  362 bits (928), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 170/217 (78%), Positives = 193/217 (88%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHFV+RIP+   LDATAPL+CAGITVYSPLR+YGLDKP +HVGVVGL GLGH+AVK
Sbjct: 127 MVADEHFVIRIPDSLALDATAPLICAGITVYSPLRYYGLDKPDLHVGVVGLSGLGHMAVK 186

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KV VISTSPSKK EA++ LGADSFL++RDQD+MQ  MG +DGIIDTVSAVHPL
Sbjct: 187 FAKAFGAKVIVISTSPSKKDEAIQHLGADSFLLNRDQDQMQGTMGALDGIIDTVSAVHPL 246

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLIGLLKS GK+V++ APE+PLELP FPLL G+ IV GSLIGGLKETQEMIDFAAKHN+
Sbjct: 247 LPLIGLLKSHGKIVMVDAPERPLELPVFPLLAGKHIVAGSLIGGLKETQEMIDFAAKHNV 306

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
           + DIEVIP DYVNTAMERL K DV+YRFVID+ NT+K
Sbjct: 307 KPDIEVIPMDYVNTAMERLLKEDVKYRFVIDIGNTLK 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138226|ref|XP_002322761.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa] gi|222867391|gb|EEF04522.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa]

 Score =  362 bits (928), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 184/217 (84%), Positives = 201/217 (92%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHF+VRIP   PLDA APLLCAGITVYSPLR++GLDKPGMHVG+VGLGGLGHVAVK
Sbjct: 143 MVADEHFIVRIPNNLPLDAGAPLLCAGITVYSPLRYFGLDKPGMHVGIVGLGGLGHVAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FA+AMGVKVTVISTSP+KK EA+E LGADSFLVSRDQD+MQAAMGT+DGIIDTVSAVHPL
Sbjct: 203 FARAMGVKVTVISTSPNKKQEALENLGADSFLVSRDQDQMQAAMGTLDGIIDTVSAVHPL 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+ LLKS GKLVL+GAPEKPLELP FPL+TGRK VGGS +GG+KETQEMIDFAAKHNI
Sbjct: 263 LPLVALLKSHGKLVLVGAPEKPLELPVFPLITGRKTVGGSCVGGIKETQEMIDFAAKHNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVIP DYVNTAMER+ KADVRYRFVIDV  T+K
Sbjct: 323 TADIEVIPMDYVNTAMERVLKADVRYRFVIDVGKTLK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489566|gb|ABK96585.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 184/217 (84%), Positives = 200/217 (92%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHF+VRIP   PLDA APLLCAGITVYSPLR++GLDKPGMHVG+VGLGGLGHVAVK
Sbjct: 143 MVADEHFIVRIPNNLPLDAGAPLLCAGITVYSPLRYFGLDKPGMHVGIVGLGGLGHVAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FA+AMGVKVTVISTSP+KK EA+E LGADSFLVSRDQD+MQAAMGT+DGIIDTVSAVHPL
Sbjct: 203 FARAMGVKVTVISTSPNKKQEALENLGADSFLVSRDQDQMQAAMGTLDGIIDTVSAVHPL 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+ LLKS GKLVL+GAPEKPLELP FPL+TGRK VGGS  GG+KETQEMIDFAAKHNI
Sbjct: 263 LPLVALLKSHGKLVLVGAPEKPLELPVFPLITGRKTVGGSCFGGIKETQEMIDFAAKHNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVIP DYVNTAMER+ KADVRYRFVIDV  T+K
Sbjct: 323 TADIEVIPMDYVNTAMERVLKADVRYRFVIDVGKTLK 359

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587709|ref|XP_002534367.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223525426|gb|EEF28018.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  360 bits (924), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 204/217 (94%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV+DEHFVVRIP+  PLDATAPLLCAGITVYSPL++YGLDKPGM +GVVGLGGLGH+AVK
Sbjct: 143 MVSDEHFVVRIPDNLPLDATAPLLCAGITVYSPLKYYGLDKPGMQLGVVGLGGLGHMAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMG KVTVISTSP+KK EA+ERLGADSFLVSRDQD+M+ A+GTMDGIIDTVSA+HPL
Sbjct: 203 FAKAMGAKVTVISTSPNKKQEAIERLGADSFLVSRDQDQMKGAIGTMDGIIDTVSAMHPL 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
            PLIGLLKS GKLVL+GAPEKPLELPAFPL+ GRK+VGGS IGG+KETQEMIDFAAKH+I
Sbjct: 263 SPLIGLLKSDGKLVLVGAPEKPLELPAFPLIGGRKLVGGSCIGGMKETQEMIDFAAKHSI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVIPA+YVNTAMER+ KADVRYRFVID+ NT+K
Sbjct: 323 TADIEVIPANYVNTAMERMLKADVRYRFVIDIGNTLK 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587478|ref|XP_002534286.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223525574|gb|EEF28097.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  360 bits (923), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 181/218 (83%), Positives = 202/218 (92%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVA+EHFVVRIP+  PLDATAPLLCAGITVYSPL++YGLDKPG  + VVGLGGLGH+AVK
Sbjct: 140 MVANEHFVVRIPDNLPLDATAPLLCAGITVYSPLKYYGLDKPGTQLAVVGLGGLGHMAVK 199

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMG KVTVISTSP+KK EA+ERLGADSFLV+RDQD+M+ AMGTMDGIIDTVSA+H L
Sbjct: 200 FAKAMGAKVTVISTSPNKKQEAIERLGADSFLVTRDQDQMKGAMGTMDGIIDTVSAMHLL 259

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLIGLLKS GKLVL+GAPEKPLELPAFPLL GRK+VGGS IGG+KETQEM+DFAAKH+I
Sbjct: 260 LPLIGLLKSHGKLVLVGAPEKPLELPAFPLLAGRKMVGGSGIGGMKETQEMLDFAAKHSI 319

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
            ADIEVIP DYVNTAMER+ KADVRYRFVID+ NT+KS
Sbjct: 320 TADIEVIPVDYVNTAMERMLKADVRYRFVIDIGNTLKS 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104051|ref|XP_002313297.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa] gi|222849705|gb|EEE87252.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 186/217 (85%), Positives = 200/217 (92%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV DEHFVVRIP+  PLDA APLLCAGITVYSPLRF+ LDKPGMHVGVVGLGGLGHVAVK
Sbjct: 143 MVTDEHFVVRIPDNLPLDAAAPLLCAGITVYSPLRFFNLDKPGMHVGVVGLGGLGHVAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMGVKVTVISTSP KK EA+E LGADSFLVSRDQDEMQAAMGTMDG+IDTVSA+HP+
Sbjct: 203 FAKAMGVKVTVISTSPKKKQEALEHLGADSFLVSRDQDEMQAAMGTMDGVIDTVSAIHPI 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLI LLK+QGKLVL+GAPEKPLELP FPL+ GRKIVGGS IGG+KETQEMIDFAAK+NI
Sbjct: 263 LPLISLLKTQGKLVLVGAPEKPLELPVFPLIMGRKIVGGSCIGGMKETQEMIDFAAKNNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVI  DYVNTAMERL+K DVRYRFVID+ NTMK
Sbjct: 323 TADIEVISMDYVNTAMERLSKTDVRYRFVIDIGNTMK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307634614|gb|ADN78309.1| cinnamyl alcohol dehydrogenase [Salvia miltiorrhiza]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 176/219 (80%), Positives = 201/219 (91%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVA+EHF+VRIP+  PLD+ APLLCAGIT YSP+R++GLDKPGMH+GVVGLGGLGHVAVK
Sbjct: 142 MVAEEHFIVRIPDNMPLDSAAPLLCAGITTYSPMRYFGLDKPGMHIGVVGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KVTVISTSP+KK EA+  LGADSFL+S+D DEMQAAMGTMDGIIDTVSA HPL
Sbjct: 202 FAKAFGSKVTVISTSPNKKDEALSNLGADSFLISKDADEMQAAMGTMDGIIDTVSAYHPL 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           MPLIGLLK+ GKLV+LGAP+KPLELP FPLL GRK++ GS IGG+KETQEMIDFAAKHNI
Sbjct: 262 MPLIGLLKAHGKLVMLGAPDKPLELPVFPLLAGRKMISGSGIGGMKETQEMIDFAAKHNI 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 219
           +ADIE+I ADYVNTA+ERLAKADV+YRFVIDVANT++ +
Sbjct: 322 KADIELISADYVNTALERLAKADVKYRFVIDVANTLQQS 360

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144875|ref|XP_002336182.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa] gi|222831876|gb|EEE70353.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa]

 Score =  353 bits (905), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 184/217 (84%), Positives = 200/217 (92%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV DEHFV+RIP+  PLDA APLLCAGITVYSPLRF+ LDKPGMHVGVVGLGGLGHVAVK
Sbjct: 143 MVTDEHFVIRIPDNLPLDAAAPLLCAGITVYSPLRFFNLDKPGMHVGVVGLGGLGHVAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMGVKVTVISTSP KK EA+E LGADSFLVSRDQDEMQAA+GTMDG+IDTVSA+HP+
Sbjct: 203 FAKAMGVKVTVISTSPKKKQEALEHLGADSFLVSRDQDEMQAAVGTMDGVIDTVSAIHPI 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLI LLK+QGKLVL+GAPEKPLELP FPL+ GRKIVGGS IGG+KETQEMIDFAAK+NI
Sbjct: 263 LPLISLLKTQGKLVLVGAPEKPLELPVFPLIMGRKIVGGSTIGGMKETQEMIDFAAKNNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVI  DYVNTAMERL+K DVRYRFVID+ NTMK
Sbjct: 323 TADIEVISMDYVNTAMERLSKTDVRYRFVIDIGNTMK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104043|ref|XP_002313294.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa] gi|222849702|gb|EEE87249.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa]

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 184/217 (84%), Positives = 200/217 (92%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV DEHFV+RIP+  PLDA APLLCAGITVYSPLRF+ LDKPGMHVGVVGLGGLGHVAVK
Sbjct: 143 MVTDEHFVIRIPDNLPLDAAAPLLCAGITVYSPLRFFNLDKPGMHVGVVGLGGLGHVAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMGVKVTVISTSP KK EA+E LGADSFLVSRDQDEMQAA+GTMDG+IDTVSA+HP+
Sbjct: 203 FAKAMGVKVTVISTSPKKKQEALEHLGADSFLVSRDQDEMQAAVGTMDGVIDTVSAIHPI 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLI LLK+QGKLVL+GAPEKPLELP FPL+ GRKIVGGS IGG+KETQEMIDFAAK+NI
Sbjct: 263 LPLISLLKTQGKLVLVGAPEKPLELPVFPLIMGRKIVGGSTIGGMKETQEMIDFAAKNNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVI  DYVNTAMERL+K DVRYRFVID+ NTMK
Sbjct: 323 TADIEVISMDYVNTAMERLSKTDVRYRFVIDIGNTMK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332384183|gb|AEE69008.1| cinnamyl alcohol dehydrogenase 3 [Camellia sinensis]

 Score =  349 bits (895), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 179/217 (82%), Positives = 195/217 (89%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHFV+RIP+  PLDA+APLLCAGIT YSPL+ +GLD+PGMHVGVVGLGGLGH AVK
Sbjct: 143 MVADEHFVIRIPDSLPLDASAPLLCAGITTYSPLKHFGLDQPGMHVGVVGLGGLGHAAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA GVKVTVISTSP+KK EA+ERLGADSFL SRD  +MQ  MGTMDGIIDTVSA HPL
Sbjct: 203 FAKAFGVKVTVISTSPNKKKEAIERLGADSFLDSRDPTQMQVVMGTMDGIIDTVSAPHPL 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLIGLLKS GKL+L+GAPEKPLELP FPLL GRKIV GS IGG+KETQEMIDFAAKHNI
Sbjct: 263 LPLIGLLKSHGKLILVGAPEKPLELPVFPLLMGRKIVAGSCIGGIKETQEMIDFAAKHNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVIP DYVNTA+ERL KADVRYRFVID+ NT+K
Sbjct: 323 TADIEVIPMDYVNTALERLVKADVRYRFVIDIGNTLK 359

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2005527	357	ELI3-1 "elicitor-activated gen	1.0	0.616	0.695	2e-79
TAIR|locus:2005528	359	ELI3-2 "elicitor-activated gen	1.0	0.612	0.695	1.3e-77
TAIR|locus:2136278	360	CAD9 "cinnamyl alcohol dehydro	0.995	0.608	0.622	1.3e-68
TAIR|locus:2120968	363	CAD6 "cinnamyl alcohol dehydro	0.995	0.603	0.593	2.8e-66
TAIR|locus:2052516	376	CAD2 "cinnamyl alcohol dehydro	0.981	0.574	0.589	1.1e-62
TAIR|locus:2052494	375	CAD3 "cinnamyl alcohol dehydro	0.981	0.576	0.585	4.8e-62
UNIPROTKB|Q0JA75	379	CAD7 "Cinnamyl alcohol dehydro	0.990	0.575	0.548	1.3e-59
TIGR_CMR|GSU_3125	352	GSU_3125 "alcohol dehydrogenas	0.963	0.602	0.490	4.1e-49
UNIPROTKB|O24562	367	CAD "Probable cinnamyl alcohol	0.977	0.585	0.488	2.9e-48
TAIR|locus:2124311	357	CAD5 "cinnamyl alcohol dehydro	0.959	0.591	0.478	2.9e-48

TAIR|locus:2005527 ELI3-1 "elicitor-activated gene 3-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 153/220 (69%), Positives = 180/220 (81%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             MV  E F++RIP+  PLD  APLLCAG+TVYSP++++GLDKPGM               K
Sbjct:   138 MVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVAVK 197

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             FAKAMG KVTVISTS  K+ EAV RLGAD+FLVSRD  +M+ AMGTMDGIIDTVSA HPL
Sbjct:   198 FAKAMGTKVTVISTSERKRDEAVTRLGADAFLVSRDPKQMKDAMGTMDGIIDTVSATHPL 257

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
             +PL+GLLK++GKLV++GAP +PLELP FPL+ GRK+V GS++GG+KETQEM+D A KHNI
Sbjct:   258 LPLLGLLKNKGKLVMVGAPAEPLELPVFPLIFGRKMVVGSMVGGIKETQEMVDLAGKHNI 317

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
              ADIE+I ADYVNTAMERLAKADV+YRFVIDVANTMK TP
Sbjct:   318 TADIELISADYVNTAMERLAKADVKYRFVIDVANTMKPTP 357

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IEP

TAIR|locus:2005528 ELI3-2 "elicitor-activated gene 3-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 153/220 (69%), Positives = 177/220 (80%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             MV +E FV+RIP+  PLDA APLLCAGITVYSP++++GLDKPGM               K
Sbjct:   138 MVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVK 197

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             FAKAMG KVTVISTS  K+ EA+ RLGAD+FLVSRD  +++ AMGTMDGIIDTVSA H L
Sbjct:   198 FAKAMGTKVTVISTSEKKRDEAINRLGADAFLVSRDPKQIKDAMGTMDGIIDTVSATHSL 257

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
             +PL+GLLK +GKLV++GAPEKPLELP  PL+  RK+V GS+IGG+KETQEMID A KHNI
Sbjct:   258 LPLLGLLKHKGKLVMVGAPEKPLELPVMPLIFERKMVMGSMIGGIKETQEMIDMAGKHNI 317

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
              ADIE+I ADYVNTAMERL KADVRYRFVIDVANT+K  P
Sbjct:   318 TADIELISADYVNTAMERLEKADVRYRFVIDVANTLKPNP 357

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046029 "mannitol dehydrogenase activity" evidence=IDA

GO:0047681 "aryl-alcohol dehydrogenase (NADP+) activity" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2136278 CAD9 "cinnamyl alcohol dehydrogenase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 137/220 (62%), Positives = 167/220 (75%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             +V D+ FV+R PE  P D+ APLLCAGITVYSP+++YG+ + G                K
Sbjct:   142 IVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVK 201

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
               KA G+KVTVIS+S +K  EA+  LGADSFLV+ D  +M+AA+GTMD IIDT+SAVH L
Sbjct:   202 IGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQKMKAAIGTMDYIIDTISAVHAL 261

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
              PL+GLLK  GKL+ LG PEKPLELP FPL+ GRK+VGGS +GG+KETQEM+DF AKHNI
Sbjct:   262 YPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGGSDVGGMKETQEMLDFCAKHNI 321

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
              ADIE+I  D +NTAMERLAK+DVRYRFVIDVAN++ S P
Sbjct:   322 TADIELIKMDEINTAMERLAKSDVRYRFVIDVANSL-SPP 360

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IMP

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2120968 CAD6 "cinnamyl alcohol dehydrogenase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 130/219 (59%), Positives = 166/219 (75%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             +V DE + V+IP   PL + APLLCAGI++YSP++++GL  P                 +
Sbjct:   143 IVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIVGLGGLGHIGVR 202

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             FAKA G KVTV+S++  K  +A++ LGAD FLVS D+D+M+AAMGTMDGIIDTVSA H +
Sbjct:   203 FAKAFGTKVTVVSSTTGKSKDALDTLGADGFLVSTDEDQMKAAMGTMDGIIDTVSASHSI 262

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
              PLIGLLKS GKLVLLGA EKP ++ AF L+ GRK + GS IGG++ETQEMIDFAA+H I
Sbjct:   263 SPLIGLLKSNGKLVLLGATEKPFDISAFSLILGRKSIAGSGIGGMQETQEMIDFAAEHGI 322

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 219
             +A+IE+I  DYVNTAM+RLAK DVRYRFVID++NT+ +T
Sbjct:   323 KAEIEIISMDYVNTAMDRLAKGDVRYRFVIDISNTLAAT 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IEP

TAIR|locus:2052516 CAD2 "cinnamyl alcohol dehydrogenase homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
 Identities = 128/217 (58%), Positives = 160/217 (73%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKP-GMXXXXXXXXXXXXXXX 59
             +V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K  G                
Sbjct:   137 IVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAV 196

Query:    60 KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
             K  KA G++VTVIS S  K+ EA++RLGADSFLV+ D  +M+ A+GTMD IIDTVSA H 
Sbjct:   197 KIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA 256

Query:   120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHN 179
             L+PL  LLK  GKLV LG PEKPL+LP F L+ GRK+VGGS IGG+KETQEM++F AKH 
Sbjct:   257 LLPLFSLLKVNGKLVALGLPEKPLDLPIFSLVLGRKMVGGSQIGGMKETQEMLEFCAKHK 316

Query:   180 IRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
             I +DIE+I    +N+AM+RLAK+DVRYRFVIDVAN++
Sbjct:   317 IVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSL 353

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IC

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

TAIR|locus:2052494 CAD3 "cinnamyl alcohol dehydrogenase homolog 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
 Identities = 127/217 (58%), Positives = 159/217 (73%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKP-GMXXXXXXXXXXXXXXX 59
             +V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K  G                
Sbjct:   136 IVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAV 195

Query:    60 KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
             K  KA G++VTVIS S  K+ EA++RLGADSFLV+ D  +M+ A+GTMD IIDTVSA H 
Sbjct:   196 KIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA 255

Query:   120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHN 179
             L+PL  LLK  GKLV LG  EKPL+LP FPL+ GRK+VGGS IGG+KETQEM++F AKH 
Sbjct:   256 LLPLFSLLKVSGKLVALGLLEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHK 315

Query:   180 IRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
             I +DIE+I    +N+AM+RL K+DVRYRFVIDVAN++
Sbjct:   316 IVSDIELIKMSDINSAMDRLVKSDVRYRFVIDVANSL 352

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IC

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

UNIPROTKB|Q0JA75 CAD7 "Cinnamyl alcohol dehydrogenase 7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 124/226 (54%), Positives = 160/226 (70%)

Query:     1 MVADEHFVVRIPEGA--------PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXX 52
             +V  + FVVR P  A        PLD+ APLLCAG+TVY+P+R +GL + G         
Sbjct:   153 VVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLG 212

Query:    53 XXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 112
                    KFA+A G++VTVISTSP K+ EA+ERLGAD F+VS +  EM+AAMGTM GII+
Sbjct:   213 GLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFIVSTNASEMKAAMGTMHGIIN 272

Query:   113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMI 172
             T SA   +   + LLK +GK++L+G PEKPL++P F L+ G KI+ GS +G + ETQEMI
Sbjct:   273 TASASTSMHSYLALLKPKGKMILVGLPEKPLQIPTFALVGGGKILAGSCMGSISETQEMI 332

Query:   173 DFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
             DFAA+H + ADIE+I AD VNTAMERLAK DVRYRFV+D+ NT++S
Sbjct:   333 DFAAEHGVAADIELIGADEVNTAMERLAKGDVRYRFVVDIGNTLRS 378

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IMP

TIGR_CMR|GSU_3125 GSU_3125 "alcohol dehydrogenase, zinc-containing" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 105/214 (49%), Positives = 139/214 (64%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             +V DE FV+ +P    L   APLLCAGIT YSP+R +G D  G                K
Sbjct:   138 IVVDERFVLHVPATLDLAGVAPLLCAGITTYSPIRRWG-DIRGKKAGVVGLGGLGHMGVK 196

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             FA+A G +V V +TSP KK +A+ RLGA   +VS + +EMQ   GT D I+DT++A H +
Sbjct:   197 FARAFGAQVVVFTTSPGKKEDAL-RLGAHEVIVSTNAEEMQQHAGTFDFILDTIAADHDI 255

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
                + +L   G + L+GAPEKPLE+ AF LL GR+ + GS+IGG+ ETQEM+DF  +HNI
Sbjct:   256 NAYLNMLGRDGTITLVGAPEKPLEVSAFALLFGRRSLSGSIIGGIAETQEMLDFCGQHNI 315

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVAN 214
              AD+EVIP   +N A ERL K+DV+YRF ID+A+
Sbjct:   316 TADVEVIPIQKINEAYERLLKSDVKYRFSIDMAS 349

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

UNIPROTKB|O24562 CAD "Probable cinnamyl alcohol dehydrogenase" [Zea mays (taxid:4577)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 105/215 (48%), Positives = 137/215 (63%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             MV D+ FVV+IP G   +  APLLCAG+TVYSPL+ +GL  PG+               K
Sbjct:   139 MVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLTNPGLRGGILGLGGVGHMGVK 198

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
              AKAMG  VTVIS+S  K++EA++ LGAD++LVS D   M AA  ++D IIDTV   HPL
Sbjct:   199 VAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPL 258

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
              P + LLK  GKLVLLG   +PL   +  ++ GRK + GS IG + ET E++ F     +
Sbjct:   259 EPYLALLKLDGKLVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGL 318

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 215
              + IEV+   YVN A+ERL + DVRYRFV+DVA +
Sbjct:   319 TSQIEVVKMGYVNEALERLERNDVRYRFVVDVAGS 353

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IMP

TAIR|locus:2124311 CAD5 "cinnamyl alcohol dehydrogenase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 101/211 (47%), Positives = 136/211 (64%)

Query:     2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
             V  + FVV+IPEG  ++  APLLCAG+TVYSPL  +GL +PG+               K 
Sbjct:   140 VVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKI 199

Query:    62 AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM 121
             AKAMG  VTVIS+S  K+ EA++ LGAD +++  DQ +M     ++D +IDTV   H L 
Sbjct:   200 AKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALE 259

Query:   122 PLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIR 181
             P + LLK  GKL+L+G    PL+     L+ GRK++ GS IG +KET+EM++F  +  + 
Sbjct:   260 PYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGLS 319

Query:   182 ADIEVIPADYVNTAMERLAKADVRYRFVIDV 212
             + IEV+  DYVNTA ERL K DVRYRFV+DV
Sbjct:   320 SIIEVVKMDYVNTAFERLEKNDVRYRFVVDV 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA;IMP

GO:0009809 "lignin biosynthetic process" evidence=IGI;IMP;TAS

GO:0005829 "cytosol" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42754	MTDH_PETCR	1, ., 1, ., 1, ., 2, 5, 5	0.7706	0.9909	0.6468	N/A	no
P93257	MTDH_MESCR	1, ., 1, ., 1, ., 2, 5, 5	0.7614	0.9909	0.6038	N/A	no
Q0J6T3	CADH5_ORYSJ	1, ., 1, ., 1, ., 1, 9, 5	0.6774	0.9818	0.6101	yes	no
Q43138	MTDH3_STYHU	1, ., 1, ., 1, ., 2, 5, 5	0.7149	0.9909	0.6005	N/A	no
Q2KNL6	GEDH1_OCIBA	1, ., 1, ., 1, ., 1, 8, 3	0.7096	0.9863	0.6027	N/A	no
P0CH36	ADHC1_MYCS2	1, ., 1, ., 1, ., 2	0.5514	0.9636	0.6074	yes	no
P0CH37	ADHC2_MYCS2	1, ., 1, ., 1, ., 2	0.5514	0.9636	0.6074	yes	no
Q9ZRF1	MTDH_FRAAN	1, ., 1, ., 1, ., 2, 5, 5	0.8294	0.9863	0.6044	N/A	no
Q6V4H0	10HGO_CATRO	1, ., 1, ., 1, ., 3, 2, 4	0.7706	0.9909	0.6055	N/A	no
Q02971	CADH7_ARATH	1, ., 1, ., 1, ., 1, 9, 5	0.7590	1.0	0.6162	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: CADL4 cinnamyl alcohol dehydrogenase-like protein (362 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	1e-123
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-121
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	1e-99
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	3e-89
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	4e-88
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-71
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	4e-49
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	3e-44
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	5e-30
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	2e-29
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	4e-25
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	2e-24
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	3e-23
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-18
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	2e-17
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	3e-17
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	4e-17
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	2e-16
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	3e-15
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	3e-14
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-12
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	1e-11
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	5e-11
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	4e-10
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	5e-10
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-09
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-09
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	3e-09
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	4e-09
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	5e-09
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	5e-09
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	7e-09
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-08
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	2e-08
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	2e-08
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	3e-08
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	4e-08
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	1e-07
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	1e-07
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-07
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	2e-07
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	3e-07
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	9e-07
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	9e-07
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	3e-06
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	6e-06
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	1e-05
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	1e-05
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	2e-05
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	3e-05
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	3e-05
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	3e-05
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	3e-05
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	4e-05
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	5e-05
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	5e-05
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	6e-05
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	7e-05
smart00829	287	smart00829, PKS_ER, Enoylreductase	8e-05
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	9e-05
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	1e-04
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	2e-04
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	2e-04
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	3e-04
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	4e-04
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	4e-04
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	5e-04
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	5e-04
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	6e-04
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	6e-04
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	9e-04
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	9e-04
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	0.001
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	0.001
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	0.001
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	0.002
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	0.002
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	0.002
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	0.003
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	0.003

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score =  353 bits (907), Expect = e-123
 Identities = 155/216 (71%), Positives = 185/216 (85%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V D+HFV+R P+  PLDA APLLCAGITVYSP+++YG+ +PG H+GV GLGGLGHVAVK
Sbjct: 142 IVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             KA G+KVTVIS+S +K+ EA+ RLGADSFLVS D ++M+AA+GTMD IIDTVSAVH L
Sbjct: 202 IGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHAL 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
            PL+GLLK  GKL+ LG PEKPLELP FPL+ GRK+VGGS IGG+KETQEM+DF AKHNI
Sbjct: 262 GPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSDIGGIKETQEMLDFCAKHNI 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
            ADIE+I  D +NTAMERLAK+DVRYRFVIDVAN++
Sbjct: 322 TADIELIRMDEINTAMERLAKSDVRYRFVIDVANSL 357

Length = 360

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  346 bits (889), Expect = e-121
 Identities = 132/211 (62%), Positives = 161/211 (76%), Gaps = 2/211 (0%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V DE FV +IPEG    A APLLCAGITVYSPL+  G+  PG  VGVVG+GGLGH+AVK
Sbjct: 129 IVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNGV-GPGKRVGVVGIGGLGHLAVK 187

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA+G +VT  S SPSKK +A  +LGAD F+ ++D + M+ A G++D IIDTVSA H L
Sbjct: 188 FAKALGAEVTAFSRSPSKKEDA-LKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDL 246

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
            P + LLK  G LVL+GAPE+PL +P FPL+ GRK V GSLIGG KETQEM+DFAA+H I
Sbjct: 247 DPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSLIGGRKETQEMLDFAAEHGI 306

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVID 211
           +  +EVIP D +N A+ERL K DVRYRFV+D
Sbjct: 307 KPWVEVIPMDGINEALERLEKGDVRYRFVLD 337

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score =  293 bits (751), Expect = 1e-99
 Identities = 140/217 (64%), Positives = 174/217 (80%), Gaps = 1/217 (0%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK-PGMHVGVVGLGGLGHVAV 59
           +V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K  G  +GV GLGGLGH+AV
Sbjct: 136 IVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAV 195

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           K  KA G++VTVIS S  K+ EA++RLGADSFLV+ D  +M+ A+GTMD IIDTVSA H 
Sbjct: 196 KIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA 255

Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHN 179
           L+PL  LLK  GKLV LG PEKPL+LP FPL+ GRK+VGGS IGG+KETQEM++F AKH 
Sbjct: 256 LLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHK 315

Query: 180 IRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
           I +DIE+I    +N+AM+RLAK+DVRYRFVIDVAN++
Sbjct: 316 IVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSL 352

Length = 375

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score =  266 bits (682), Expect = 3e-89
 Identities = 119/213 (55%), Positives = 152/213 (71%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV D+ FVV+IPEG   +  APLLCAG+TVYSPL  +GL + G+  G++GLGG+GH+ VK
Sbjct: 139 MVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVK 198

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            AKAMG  VTVIS+S  K+ EA+E LGAD +LVS D  EMQ A  ++D IIDTV   HPL
Sbjct: 199 IAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHPL 258

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
            P + LLK  GKL+L+G    PL+     L+ GRK++ GS IG +KET+EM++F  +  +
Sbjct: 259 EPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFIGSMKETEEMLEFCKEKGL 318

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVA 213
            + IEV+  DYVNTA ERL K DVRYRFV+DVA
Sbjct: 319 TSMIEVVKMDYVNTAFERLEKNDVRYRFVVDVA 351

Length = 357

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  262 bits (672), Expect = 4e-88
 Identities = 97/211 (45%), Positives = 132/211 (62%), Gaps = 3/211 (1%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVAD  + V +P+G PL   APLLCAGITVYS LR  G  +PG  V V+G+GGLGH+AV+
Sbjct: 122 MVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRDAGP-RPGERVAVLGIGGLGHLAVQ 180

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           +A+AMG +   I+ SP K+  A  +LGAD  + S  + + QAA G  D I+ TV +    
Sbjct: 181 YARAMGFETVAITRSPDKRELA-RKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAA 239

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELP-AFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHN 179
              +G L+  G++VL+G PE P   P  FPL+  R+ + GS  GG  + QE +DFAA+  
Sbjct: 240 EAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGK 299

Query: 180 IRADIEVIPADYVNTAMERLAKADVRYRFVI 210
           ++  IE  P D  N A ER+ K DVR+RFV+
Sbjct: 300 VKPMIETFPLDQANEAYERMEKGDVRFRFVL 330

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  220 bits (562), Expect = 2e-71
 Identities = 97/214 (45%), Positives = 126/214 (58%), Gaps = 6/214 (2%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V    +VV+IPEG  L   APLLCAGIT Y  L+   + KPG  V VVG GGLGH+AV+
Sbjct: 126 VVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANV-KPGKWVAVVGAGGLGHMAVQ 184

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           +AKAMG +V  I+ S  K  E  ++LGAD  + S D D ++A     D IIDTV     L
Sbjct: 185 YAKAMGAEVIAITRSEEKL-ELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGP-ATL 242

Query: 121 MPLIGLLKSQGKLVLLGAP--EKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
            P +  L+  G LVL+G P       LPAF L+     + GSL+G   + +E +DFAA+ 
Sbjct: 243 EPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEG 302

Query: 179 NIRADI-EVIPADYVNTAMERLAKADVRYRFVID 211
            I+ +I E IP D +N A ER+ K  VR R VID
Sbjct: 303 KIKPEILETIPLDEINEAYERMEKGKVRGRAVID 336

Length = 339

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  162 bits (413), Expect = 4e-49
 Identities = 75/214 (35%), Positives = 117/214 (54%), Gaps = 8/214 (3%)

Query: 1   MVADEHFVVRIPEGAPLDAT--APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVA 58
           M+A    + RIP+   LDA   APLLCAG+T ++ LR  G  KPG  V V G+GGLGH+A
Sbjct: 123 MLAPAEALARIPDD--LDAAEAAPLLCAGVTTFNALRNSGA-KPGDLVAVQGIGGLGHLA 179

Query: 59  VKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQA--AMGTMDGIIDTVSA 116
           V++A  MG +   IS    K   A + LGA  ++ +  +D  +A   +G    I+ T   
Sbjct: 180 VQYAAKMGFRTVAISRGSDKADLARK-LGAHHYIDTSKEDVAEALQELGGAKLILATAPN 238

Query: 117 VHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAA 176
              +  L+G L  +GKL++LGA  +P+ +    L+ GRK + G   G   ++++ + F+A
Sbjct: 239 AKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKFSA 298

Query: 177 KHNIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
            H +R  +E  P +  N A +R+     R+R V+
Sbjct: 299 LHGVRPMVETFPLEKANEAYDRMMSGKARFRVVL 332

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  150 bits (382), Expect = 3e-44
 Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 11/220 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAV 59
            +AD  +V  IP+G   +  APLLCAG+TVY  L+  GL KPG  V + G GG LGH+ V
Sbjct: 125 AIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKAGL-KPGDWVVISGAGGGLGHLGV 183

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTM--DGIIDTV 114
           ++AKAMG++V  I     K  E  + LGAD+F+  +  D    ++   G      ++ T 
Sbjct: 184 QYAKAMGLRVIAIDVGDEKL-ELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTA 242

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPL-LTGRKIVGGSLIGGLKETQEMI 172
            +       +  L+  G LV +G P    + L  F L L G  IVG SL+G  ++ QE +
Sbjct: 243 VSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVG-SLVGTRQDLQEAL 301

Query: 173 DFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV 212
           +FAA+  ++  I+V+P + +N   E++ +  +  R V+D 
Sbjct: 302 EFAARGKVKPHIQVVPLEDLNEVFEKMEEGKIAGRVVVDF 341

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  113 bits (284), Expect = 5e-30
 Identities = 66/212 (31%), Positives = 99/212 (46%), Gaps = 11/212 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADE F   IPE    +  APLLCAGI  Y  L+  GL KPG  +G+ G G   H+A++
Sbjct: 127 MVADERFAYPIPEDYDDEEAAPLLCAGIIGYRALKLAGL-KPGQRLGLYGFGASAHLALQ 185

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            A+  G +V   + S   +  A E LGAD    S D          +D  I        +
Sbjct: 186 IARYQGAEVFAFTRSGEHQELARE-LGADWAGDSDDLPP-----EPLDAAIIFAPVGALV 239

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
              +  +K  G++VL G       +PAF   LL G K +        ++ +E +  AA+ 
Sbjct: 240 PAALRAVKKGGRVVLAGIHMSD--IPAFDYELLWGEKTIRSVANLTRQDGEEFLKLAAEI 297

Query: 179 NIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
            I+ ++E  P +  N A++ L +  +R   V+
Sbjct: 298 PIKPEVETYPLEEANEALQDLKEGRIRGAAVL 329

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  111 bits (280), Expect = 2e-29
 Identities = 66/216 (30%), Positives = 97/216 (44%), Gaps = 11/216 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK-PGMHVGVVGLGGLGHVAVK 60
           V     V       P++A APL  AG+T Y  ++       PG  V V+G+GGLGH+AV+
Sbjct: 127 VPSRRLVKLPRGLDPVEA-APLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQ 185

Query: 61  FAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTV 114
             +A+    V  +  S      A ERLGAD  L + D D ++       G     +ID V
Sbjct: 186 ILRALTPATVIAVDRSEEALKLA-ERLGADHVLNASD-DVVEEVRELTGGRGADAVIDFV 243

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDF 174
            +   L     LL   G+ V++G       LP   L+     V GSL G   E  E++  
Sbjct: 244 GSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEISVIGSLWGTRAELVEVVAL 302

Query: 175 AAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
           A    ++ +I   P +  N A++RL +  V  R V+
Sbjct: 303 AESGKVKVEITKFPLEDANEALDRLREGRVTGRAVL 338

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  100 bits (251), Expect = 4e-25
 Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 12/217 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V    ++V  P G      A L C+G+T YS ++          V ++G GGLG +A+  
Sbjct: 136 VPHSRYLV-DPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALAL 194

Query: 62  AKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE----MQAAMGTMDGIIDTVSA 116
            KA+G   + V+    +K  EA +  GAD  +   D D     ++AA G +D +ID V+ 
Sbjct: 195 LKALGPANIIVVDIDEAKL-EAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNN 253

Query: 117 VHPLMPLIGLLKSQGKLVLLG--APEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDF 174
                    +L   GKLVL+G    E  L LP  PL      + GS +G L+E +E++  
Sbjct: 254 SATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPL--RALTIQGSYVGSLEELRELVAL 311

Query: 175 AAKHNI-RADIEVIPADYVNTAMERLAKADVRYRFVI 210
           A    +    +   P   VN A++ L    V  R V+
Sbjct: 312 AKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVL 348

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 97.0 bits (242), Expect = 2e-24
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 6/179 (3%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V     +V +P+G  L+  A L     T Y  LR  G+ KPG  V V+G GG+G +A +
Sbjct: 93  VVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQ 152

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGT----MDGIIDTVSA 116
            AKA G +V V   S  K  E  + LGAD  +  +++D  +    T     D +ID V  
Sbjct: 153 LAKAAGARVIVTDRSDEKL-ELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG 211

Query: 117 VHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKI-VGGSLIGGLKETQEMIDF 174
              L   + LL+  G++V++G       L     L  +++ + GS  G  ++ +E +D 
Sbjct: 212 PETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTREDFEEALDL 270

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 95.0 bits (237), Expect = 3e-23
 Identities = 65/221 (29%), Positives = 93/221 (42%), Gaps = 19/221 (8%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V     +V +P+G P    A    A +T Y  +   G  KPG  V V+GLGGLG  AV+ 
Sbjct: 125 VVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQI 184

Query: 62  AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTV------- 114
           AKAMG  V  +     K   A E LGAD  L S D          + G  D +       
Sbjct: 185 AKAMGAAVIAVDIKEEKLELAKE-LGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQ 243

Query: 115 ----SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQE 170
                A          +K  G++V++G     L +    L+     + GS  G  ++  E
Sbjct: 244 PTFEDAQK-------AVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPE 296

Query: 171 MIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
           ++D  AK  +   +E  P D +   +ERL K  V+ R V+ 
Sbjct: 297 VLDLIAKGKLDPQVETRPLDEIPEVLERLHKGKVKGRVVLV 337

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 57/212 (26%), Positives = 90/212 (42%), Gaps = 9/212 (4%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
           V     +   P     +  A L  AG+T +  L   G  K G  V + G  GG+G  AV+
Sbjct: 104 VVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQ 163

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD-EMQAAMGTMDGIIDTVSAVHP 119
            AKA G +  VI+T+ +  ++ +  LGAD  +     D E  AA G +D ++DTV     
Sbjct: 164 LAKARGAR--VIATASAANADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGG-ET 220

Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHN 179
           L   + L+K  G+LV +  P    +      +    +        L E  E+++      
Sbjct: 221 LARSLALVKPGGRLVSIAGPPPAEQAAKRRGVRAGFVFVEPDGEQLAELAELVE---AGK 277

Query: 180 IRADI-EVIPADYVNTAMERLAKADVRYRFVI 210
           +R  +  V P +    A ERL     R + V+
Sbjct: 278 LRPVVDRVFPLEDAAEAHERLESGHARGKVVL 309

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 60/217 (27%), Positives = 114/217 (52%), Gaps = 13/217 (5%)

Query: 2   VADEHFVVRIPEG-APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            AD  + V++PEG  P  A++ + CAG+T Y  ++  G+ KPG  + + G GGLG++A++
Sbjct: 125 TAD--YAVKVPEGLDPAQASS-ITCAGVTTYKAIKVSGI-KPGQWIAIYGAGGLGNLALQ 180

Query: 61  FAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD----EMQAAMGTMDGIIDTVS 115
           +AK     KV  +  +  K + A E +GAD  + S+  +     +Q   G     + T  
Sbjct: 181 YAKNVFNAKVIAVDINDDKLALAKE-VGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAV 239

Query: 116 AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL-LTGRKIVGGSLIGGLKETQEMIDF 174
           A       +  +++ G++V +G P + ++L    L L G ++V GSL+G  ++ +E   F
Sbjct: 240 AKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEVV-GSLVGTRQDLEEAFQF 298

Query: 175 AAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
            A+  +   +++ P + +N   + + +  ++ R VID
Sbjct: 299 GAEGKVVPKVQLRPLEDINDIFDEMEQGKIQGRMVID 335

Length = 338

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 74.3 bits (183), Expect = 3e-17
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 6/131 (4%)

Query: 53  GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTM-- 107
           G+G  AV+ AKA+G    +      +K E  + LGAD  +  RD+D    ++   G    
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDEDFVERVRELTGGRGV 60

Query: 108 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KPLELPAFPLLTGRKIVGGSLIGGLK 166
           D +ID V A   L   + LL+  G++V++G P   P+  P   LL     + GSL GG +
Sbjct: 61  DVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGGGRE 120

Query: 167 ETQEMIDFAAK 177
           E +E ++  A 
Sbjct: 121 EFEEALELLAS 131

Length = 131

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 78.1 bits (193), Expect = 4e-17
 Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 8/214 (3%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
              E  +V++P+    ++ A   C   T    L+  G+ K G  V V G  GG+G  A++
Sbjct: 123 KVPERSLVKLPDNVSDESAALAACVVGTAVHALKRAGV-KKGDTVLVTGAGGGVGIHAIQ 181

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            AKA+G +V  ++ SP K  + ++ LGAD  +      E    +G  D +I+ V +   +
Sbjct: 182 LAKALGARVIAVTRSPEKL-KILKELGADYVIDGSKFSEDVKKLGGADVVIELVGS-PTI 239

Query: 121 MPLIGLLKSQGKLVLLG--APEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
              +  L   G+LVL+G   P+     P   +L   +I+ GS+     + +E +    + 
Sbjct: 240 EESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRII-GSISATKADVEEALKLVKEG 298

Query: 179 NIRADIE-VIPADYVNTAMERLAKADVRYRFVID 211
            I+  I+ V+  + +N A+E L    V  R V+ 
Sbjct: 299 KIKPVIDRVVSLEDINEALEDLKSGKVVGRIVLK 332

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 76.5 bits (189), Expect = 2e-16
 Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 16/218 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  E  +V+I   APL+    L C   T    +      +PG  V V GLGG+G  A++
Sbjct: 144 TVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQ 203

Query: 61  FAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTV 114
            AKA G  ++  +  +P K   A ++ GA  F+  ++ D++  A+     G  D   + V
Sbjct: 204 GAKAAGAGRIIAVDINPEKLELA-KKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECV 262

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPE--KPLELPAFPLLTGRKIVGGSLIGGLK---ETQ 169
             V  +   +      G  V++G     + +    F L+TGR    GS  GG +   +  
Sbjct: 263 GNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWK-GSAFGGARPRSDIP 321

Query: 170 EMIDFAAKHNIRAD---IEVIPADYVNTAMERLAKADV 204
            ++D      +  D      IP + +N A + + +   
Sbjct: 322 RLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKS 359

Length = 366

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 72.8 bits (179), Expect = 3e-15
 Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 18/228 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAV 59
           +V    ++V +P+G   +  A L  AG+T +  L      KPG  V V G  GG+G  A+
Sbjct: 101 VVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAI 160

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTM-----DGIIDTV 114
           + AKA+G  V V   S S+K E ++ LGAD  +  R++D ++           D ++DTV
Sbjct: 161 QLAKALGATV-VAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGRKIVGGSLIGGL------K 166
                    +  L   G+LV +GA     P+ L   PLL  R  + G  +G        +
Sbjct: 220 GG-DTFAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAE 278

Query: 167 ETQEMIDFAAKHNIRADI-EVIP-ADYVNTAMERLAKADVRYRFVIDV 212
              E+ D  A   ++  I  V P A+    A   L +     + V+ V
Sbjct: 279 ALAELFDLLASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV 326

Length = 326

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 69.9 bits (172), Expect = 3e-14
 Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 13/194 (6%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVK 60
           VA E  + + PEG   +  A L  AG+T    LR  G  KPG  V + G  GG+G  AV+
Sbjct: 103 VAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQ 162

Query: 61  FAKAMGVKVTVI-STSPSKKSEAVERLGADSFLVSRDQD--EMQAAMGTMDGIIDTVSAV 117
            AKA+G  VT + ST   + +E V  LGAD  +    +D   + A     D I D V   
Sbjct: 163 IAKALGAHVTGVCST---RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNS 219

Query: 118 HP-LMPLIGLLKSQGKLVLLGAPEK-----PLELPAFPLLTGRKIVGGSLIGGLKETQEM 171
              L      LK  G+ V +G          L LP      GR++         ++ +++
Sbjct: 220 PFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQL 279

Query: 172 IDFAAKHNIRADIE 185
            +   +  ++  I+
Sbjct: 280 AELVEEGKLKPVID 293

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 42/192 (21%), Positives = 77/192 (40%), Gaps = 13/192 (6%)

Query: 2   VADEHFVVRIPEGAPLDATA--PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAV 59
           V  +  + ++P+G   +A A    L      ++        +PG  V VVG G +G +A+
Sbjct: 129 VPADFNLAKLPDGIDEEAAALTEPLATAYHGHA---ERAAVRPGGTVVVVGAGPIGLLAI 185

Query: 60  KFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDT 113
             AK +G   V V+  SP +   A E  GAD  +   + D     +    G     +I+ 
Sbjct: 186 ALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRK--IVGGSLIGGLKETQEM 171
           V +   L   +  L+  G +V++G            L+  ++  + G     G ++ +  
Sbjct: 246 VGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERA 305

Query: 172 IDFAAKHNIRAD 183
           +D  A   I  +
Sbjct: 306 LDLLASGKIDPE 317

Length = 350

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 15/224 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V     +  +PE      +A L CAG T Y  L+     +PG  V V+G+GG+G  A++
Sbjct: 146 AVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQ 205

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTM--DGIIDTVS 115
            AKA G    +      +K    + LGA   + +  +D    ++   G    D +++ + 
Sbjct: 206 LAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEALG 265

Query: 116 AVHPLMPLIGLLKSQGKLVL--LGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEM-- 171
                   + +++  G+ V+  L       E+P   L+     + GS   G +  Q++  
Sbjct: 266 KPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSY--GARPRQDLPE 323

Query: 172 -IDFAAKHNIRADIEV---IPADYVNTAMERLAKADVRYRFVID 211
            +  AA   +  +  V      + +N A E L K  +  R +++
Sbjct: 324 LVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 60.8 bits (148), Expect = 5e-11
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 12/214 (5%)

Query: 4   DEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFA 62
               +V++P     +    + C    VY  LR  G+ K G  V V G  GG+G  A++ A
Sbjct: 125 KVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRAGV-KKGETVLVTGAGGGVGIHAIQVA 183

Query: 63  KAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP 122
           KA+G KV  +++S SK  + V +  AD  +V     E    +G  D +I+TV     L  
Sbjct: 184 KALGAKVIAVTSSESKA-KIVSKY-ADYVIVGSKFSEEVKKIGGADIVIETV-GTPTLEE 240

Query: 123 LIGLLKSQGKLVLLG----APEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
            +  L   GK++ +G    +P   L L  + +L   +I+ G +    ++ +E +   A+ 
Sbjct: 241 SLRSLNMGGKIIQIGNVDPSPTYSLRL-GYIILKDIEII-GHISATKRDVEEALKLVAEG 298

Query: 179 NIRADIEV-IPADYVNTAMERLAKADVRYRFVID 211
            I+  I   +    ++ A+E L       + ++ 
Sbjct: 299 KIKPVIGAEVSLSEIDKALEELKDKSRIGKILVK 332

Length = 334

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 17/159 (10%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVG-----VVGLGGLGH 56
           V D   V+ +P+    +  A L CAG+T Y  L      K  +  G       G GG+G 
Sbjct: 101 VVDARAVLPLPDSLSFEEAAALPCAGLTAYQALF----KKLRIEAGRTILITGGAGGVGS 156

Query: 57  VAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----II 111
            AV+ AK  G  + VI+T   +  E V+ LGAD  +   D+D  +       G     ++
Sbjct: 157 FAVQLAKRAG--LRVITTCSKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVL 214

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL 150
           DTV        L   L   G LV +         P F  
Sbjct: 215 DTVGGETAAA-LAPTLAFNGHLVCIQGRPDASPDPPFTR 252

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 57.9 bits (141), Expect = 5e-10
 Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 29/200 (14%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V  E  +VR P+    +  A L CAG+T ++ L   G  KPG  V V G GG+   A++F
Sbjct: 120 VLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQF 179

Query: 62  AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA------MGTMDGIIDT-- 113
           AKA G +V + ++S  +K E  + LGAD  +  R   +             +D +++   
Sbjct: 180 AKAAGARV-IATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGG 238

Query: 114 -------VSAVHP--LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGG 164
                  + AV P  ++ LIG L                 +   PLLT    + G  +G 
Sbjct: 239 PGTLAQSIKAVAPGGVISLIGFLSGFE-----------APVLLLPLLTKGATLRGIAVGS 287

Query: 165 LKETQEMIDFAAKHNIRADI 184
             + + M      H IR  I
Sbjct: 288 RAQFEAMNRAIEAHRIRPVI 307

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 36/234 (15%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V DE++V +I   APL+    L C   T Y         +PG  V V GLG +G  A+ 
Sbjct: 143 TVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIM 202

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQD----EMQAAM----------- 104
            AK  G  ++  +  +  K  +A +  GA  F+  +D D    E+   M           
Sbjct: 203 GAKIAGASRIIGVDINEDKFEKA-KEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFEC 261

Query: 105 -GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRKIVGGSLI 162
            G  D + + + +              G  V++G P    L +  F L+ GR    GS  
Sbjct: 262 TGNADLMNEALESTK---------LGWGVSVVVGVPPGAELSIRPFQLILGRT-WKGSFF 311

Query: 163 GGLKETQEMIDFAAKH-NIRADIE-----VIPADYVNTAMERLAKADVRYRFVI 210
           GG K   ++    +K+ N + D++     V+P + +N   + L K+    R VI
Sbjct: 312 GGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFD-LMKSGECIRTVI 364

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAV 59
           +V     V  +P+G   +  A L     T Y  L      +PG  V V+G  GG+G  AV
Sbjct: 98  VVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAV 157

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD 98
           + AKA+G +V   ++S  +K      LGAD  +  RD D
Sbjct: 158 QLAKALGARVIAAASSE-EKLALARALGADHVIDYRDPD 195

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 9/172 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  E  VV+I +  PLD  A L C   T    +      +PG  V V+G GG+G  A++
Sbjct: 141 TVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQ 200

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGI-----IDTV 114
            A+  G  ++  +   P K  E   R GA   + + + D ++A     DG       + V
Sbjct: 201 GARIAGASRIIAVDPVPEKL-ELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAV 259

Query: 115 SAVHPLMPLIGLLKSQGKLVLLG--APEKPLELPAFPLLTGRKIVGGSLIGG 164
                +   + + +  G  V++G   P + + LPA  L    K + GSL G 
Sbjct: 260 GRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGS 311

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 21/185 (11%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLC-----AGITVYSPLRFYGLDKPGMHVGVVGLGGLG 55
            V  E  VV++ +  PL+  APL C     AG  V + L+     +PG  + V G G +G
Sbjct: 145 AVVHERNVVKVDKDVPLELLAPLGCGIQTGAG-AVLNVLK----PRPGSSIAVFGAGAVG 199

Query: 56  HVAVKFAKAMGVK-VTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGT-MDGI 110
             AV  AK  G   +  +    S+   A E LGA   +  +++D    ++   G  +D  
Sbjct: 200 LAAVMAAKIAGCTTIIAVDIVDSRLELAKE-LGATHVINPKEEDLVAAIREITGGGVDYA 258

Query: 111 IDTVSAVHPLMPLIGLLKSQGKLVLLGAP--EKPLELPAFPLLT-GRKIVGGSLIGGLKE 167
           +DT      +   +  L  +G L L+GAP     + L    LL  G+ I G  +I G   
Sbjct: 259 LDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRG--VIEGDSV 316

Query: 168 TQEMI 172
            QE I
Sbjct: 317 PQEFI 321

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 10/158 (6%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
           V     +V +P+G   +  A L    +T Y  L      K G  V V G  G +GH AV+
Sbjct: 104 VVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQ 163

Query: 61  FAKAMGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTV 114
            A+  G    VI+T S ++ +E V + GAD+    R +D     +    G     II+ +
Sbjct: 164 LARWAG--ARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVL 221

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT 152
           + V+ L   + +L   G++V+ G+      +P  PL+ 
Sbjct: 222 ANVN-LAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMA 258

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 14/210 (6%)

Query: 8   VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV 67
           VV+I +  PL+  A   CA +T    +      +PG  V VVGLGG+G  A+  A A G 
Sbjct: 157 VVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGA 216

Query: 68  -KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ----AAMGTMDGIIDTVSAVHPLMP 122
            +V  +  +  K + A E LGA + + + D + ++       G +D   +   +V  L  
Sbjct: 217 SQVVAVDLNEDKLALARE-LGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALET 275

Query: 123 LIGLLKSQGKLVLLG--APEKPLELPAFPLLTGRKIVGGSLIGGLKETQEM---IDFAAK 177
              + +  G  V  G   PE  L +PA  L+   + + GS +G     +++   +     
Sbjct: 276 AYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLS 335

Query: 178 HNIRAD---IEVIPADYVNTAMERLAKADV 204
             +  D      +P D +N   +RLA  + 
Sbjct: 336 GRLPVDKLLTHRLPLDEINEGFDRLAAGEA 365

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 8   VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG- 66
           +VR+P+  P +  AP  CA  TV + L   G    G  V V G G LG  AV  AK  G 
Sbjct: 143 IVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGA 202

Query: 67  VKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMD 108
            +V VI  SP +  E     GAD+ +   +  + Q      D
Sbjct: 203 RRVIVIDGSPERL-ELAREFGADATIDIDELPDPQRRAIVRD 243

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 54/229 (23%), Positives = 83/229 (36%), Gaps = 38/229 (16%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V  E  + +I   APL+    + C   T Y          PG    V GLGG+G   +  
Sbjct: 143 VVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMG 202

Query: 62  AKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQD--------EMQA--------AM 104
            KA G  ++  +  +  K  +A + LGA   +  RDQD        EM           +
Sbjct: 203 CKAAGASRIIAVDINKDKFEKAKQ-LGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVI 261

Query: 105 GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE--KPLELPAFPLLTGRKIVGGSLI 162
           G+ D +   + A              G  V++G P       L    LLTGR I  G++ 
Sbjct: 262 GSADTLKQALDATR---------LGGGTSVVVGVPPSGTEATLDPNDLLTGRTIK-GTVF 311

Query: 163 GGLKETQEMI----DFAAKHNIRAD---IEVIPADYVNTAMERLAKADV 204
           GG K    +      +  K     D     V+P + +N   + +   + 
Sbjct: 312 GGWKSKDSVPKLVALYRQK-KFPLDELITHVLPFEEINDGFDLMRSGES 359

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 21/160 (13%)

Query: 8   VVRIPEGAPLDATA---PLLCAGITVY-SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAK 63
           +++IP+    +  A   P   A   V  + +        G  V V+G G +G +A+++ K
Sbjct: 127 LIKIPDHVDYEEAAMIEPAAVALHAVRLAGI------TLGDTVVVIGAGTIGLLAIQWLK 180

Query: 64  AMGVK-VTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVSAV 117
            +G K V  +     +K      LGAD  +  +++D  +      +G     +I+   + 
Sbjct: 181 ILGAKRVIAVDID-DEKLAVARELGADDTINPKEEDV-EKVRELTEGRGADLVIEAAGSP 238

Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIV 157
             +   + L +  GK+VL+G P   + L         KI+
Sbjct: 239 ATIEQALALARPGGKVVLVGIPYGDVTLSEEAF---EKIL 275

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 6/146 (4%)

Query: 9   VRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK 68
           VR+P+       A L C   T +  L      KPG  V V G GG+G  AV  A A+G +
Sbjct: 132 VRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGAR 191

Query: 69  VTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTVSAVHPLMPL 123
           V  +     K   A E LGA + + + + +++ AA+     G     +D +         
Sbjct: 192 VIAVDIDDDKLELARE-LGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIPETCRNS 250

Query: 124 IGLLKSQGKLVLLGAPEKPLELPAFP 149
           +  L+ +G+ V +G         A P
Sbjct: 251 VASLRKRGRHVQVGLTLGEEAGVALP 276

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 9/166 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
                 V+ +PEG  L   A L     TV+S L   G  K G  V +  G  G+G  A++
Sbjct: 99  AVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQ 158

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVS 115
            AKA G +V   + S  +K  A E LGAD  +  R++D ++       G     I+D V 
Sbjct: 159 LAKAFGARVFTTAGSD-EKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVG 217

Query: 116 AVHPLMPLIGLLKSQGKLVLLGAPE-KPLELPAFPLLTGRKIVGGS 160
             + L   I  L   G++V +G    +  EL   PLL  R  + GS
Sbjct: 218 GSY-LNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGS 262

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV-GLGGLGHVAV 59
            V D   +   P    +   A L   GIT +  L      + G  V +  G GG+GHVAV
Sbjct: 103 AVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAV 162

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGAD 89
           + AKA G +  V +T+ S+K+     LGAD
Sbjct: 163 QLAKAAGAR--VYATASSEKAAFARSLGAD 190

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 11/191 (5%)

Query: 4   DEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFA 62
           D  ++V +PEG        L+   +T Y  L        G  V + G  GG+G   ++ A
Sbjct: 101 DAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELA 160

Query: 63  KAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD--EMQAAMGTMDGIIDTVSAVHPL 120
              G    V  T+  +   A+  LGA + +  R +D        G +D + D V      
Sbjct: 161 LLAG--AEVYGTASERNHAALRELGA-TPIDYRTKDWLPAMLTPGGVDVVFDGVGGES-Y 216

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
                 L   G LV  G     L+        G  +   + +  L         A  + +
Sbjct: 217 EESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLL----PTGRRATFYYV 272

Query: 181 RADIEVIPADY 191
             D    P  +
Sbjct: 273 WRDRAEDPKLF 283

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 24/187 (12%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAV 59
           +V  E  + +IP+    +  A L  A +T Y  L+  GL  PG  V V G  G  G  AV
Sbjct: 122 IVVPEKNLFKIPDSISDELAASLPVAALTAYHALKTAGL-GPGETVVVFGASGNTGIFAV 180

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           + AK MG +V  +S     + + ++  GAD  +   D DE++  +  +  + D V  ++ 
Sbjct: 181 QLAKMMGAEVIAVS-----RKDWLKEFGADEVV---DYDEVEEKVKEITKMADVV--INS 230

Query: 120 LMPLI-----GLLKSQGKLVLLGA---PEKPLELPAFPLLTGRKI-VGGSLIGGLKETQE 170
           L          +L   G+LV  G     E  L+L     L  ++I + GS  G  KE  E
Sbjct: 231 LGSSFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSD---LYSKQISIIGSTGGTRKELLE 287

Query: 171 MIDFAAK 177
           ++  A  
Sbjct: 288 LVKIAKD 294

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 60/233 (25%), Positives = 91/233 (39%), Gaps = 52/233 (22%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLC-------AGITVYSPLRFYGLDKPGMHVGVVGLGGL 54
           V     V +I   APLD    L C       A   V          K G  V + GLG +
Sbjct: 147 VVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKV-------KKGSTVAIFGLGAV 199

Query: 55  GHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQD----EMQAAM----- 104
           G    + A+  G  ++  +  +PSK  +A ++ G   F+  +D D    E+ A M     
Sbjct: 200 GLAVAEGARIRGASRIIGVDLNPSKFEQA-KKFGVTEFVNPKDHDKPVQEVIAEMTGGGV 258

Query: 105 -------GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGRK 155
                  G +D +I     VH            G  VLLG P K       P  LL GR 
Sbjct: 259 DYSFECTGNIDAMISAFECVHD---------GWGVTVLLGVPHKDAVFSTHPMNLLNGRT 309

Query: 156 IVGGSLIGGLKETQEMIDFAAKHNIRADIEV-------IPADYVNTAMERLAK 201
           +  G+L GG K   ++ +   K+ ++ ++E+       +P   +N A + L K
Sbjct: 310 LK-GTLFGGYKPKTDLPNLVEKY-MKKELELEKFITHELPFSEINKAFDLLLK 360

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 51/199 (25%), Positives = 75/199 (37%), Gaps = 16/199 (8%)

Query: 7   FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG 66
           F  R+P G      APLLCAGI  Y  L    L  PG  +G+ G GG  H+  + A A G
Sbjct: 131 FAYRLPTGYDDVELAPLLCAGIIGYRALLRASL-PPGGRLGLYGFGGSAHLTAQVALAQG 189

Query: 67  VKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGL 126
             V V++   + +  A+  LGA S                +D  I    A   + P +  
Sbjct: 190 ATVHVMTRGAAARRLALA-LGAASA-----GGAYDTPPEPLDAAILFAPAGGLVPPALEA 243

Query: 127 LKSQGKLVLLG-----APEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIR 181
           L   G L + G      P    +   F     R +   +        +E ++ AA+H +R
Sbjct: 244 LDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNTRADA----REFLELAAQHGVR 299

Query: 182 ADIEVIPADYVNTAMERLA 200
                 P    + A+  L 
Sbjct: 300 VTTHTYPLSEADRALRDLK 318

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 51/192 (26%), Positives = 83/192 (43%), Gaps = 15/192 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
           +V   + V ++P+  PL+  A   PL  A    +  +R  G  KPG    V+G G +G +
Sbjct: 133 VVVPAYHVHKLPDNVPLEEAALVEPLAVA----WHAVRRSGF-KPGDTALVLGAGPIGLL 187

Query: 58  AVKFAKAMGVKVTVIS-TSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGII 111
            +   KA G    ++S  S +++ E  E LGA   L   + D +         G +D   
Sbjct: 188 TILALKAAGASKIIVSEPSEARR-ELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSF 246

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEM 171
           D       L   I  L+ +G  V +   EKP+      L+   K + GS+    ++ +E+
Sbjct: 247 DCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFEEV 306

Query: 172 IDFAAKHNIRAD 183
           ID  A   I A+
Sbjct: 307 IDLLASGKIDAE 318

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 48.2 bits (116), Expect = 9e-07
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
           V     ++ +PEG  L   A L     T +  L   G  K G  V +  G  G+G  A++
Sbjct: 99  VVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQ 158

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVS 115
            AKA+G +V   + S   K EA   LGAD  +  R +D  +       G     I+D V 
Sbjct: 159 LAKALGARVIATAGSEE-KLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVG 217

Query: 116 AVHPLMPLIGLLKSQGKLVLLG 137
             + L   +  L   G+LVL+G
Sbjct: 218 GDY-LARNLRALAPDGRLVLIG 238

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 18/143 (12%)

Query: 2   VADEHFVVRIPEGAPLD--ATAPLLCAGITVYSPLRFYGLD----KPGMHVGVVGLGGLG 55
           V   + +V +P+G P +  A   L    +         G+     + G  V VVGLG +G
Sbjct: 59  VVPANLLVPLPDGLPPERAALTALAATALN--------GVRDAEPRLGERVAVVGLGLVG 110

Query: 56  HVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTV 114
            +A + AKA G    V+   P   + E  E LG  +  V+ D  +     G  D +I+  
Sbjct: 111 LLAAQLAKAAGA-REVVGVDPDAARRELAEALGP-ADPVAADTADEIGGRG-ADVVIEAS 167

Query: 115 SAVHPLMPLIGLLKSQGKLVLLG 137
            +   L   + LL+ +G++VL+G
Sbjct: 168 GSPSALETALRLLRDRGRVVLVG 190

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           M+  E  ++ +P+       A LLC   T Y  LR  G+      V VVG G +G  A+ 
Sbjct: 123 MLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVGV-SGRDTVLVVGAGPVGLGALM 181

Query: 61  FAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTV 114
            A+A+G +  VI   PS ++ E  + LGAD F+++  QD++Q       G      I+  
Sbjct: 182 LARALGAE-DVIGVDPSPERLELAKALGAD-FVINSGQDDVQEIRELTSGAGADVAIECS 239

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDF 174
                    +  ++  G+LVL+G   +     +  L+  ++ + GS    + + +E  +F
Sbjct: 240 GNTAARRLALEAVRPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEF 299

Query: 175 AAKHNIRAD 183
            A+H +  D
Sbjct: 300 LARHKLEVD 308

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 12/159 (7%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVK 60
           +     VV++P+G      A L    +T Y  L      +PG  V +      +G  A++
Sbjct: 104 LVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQ 163

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVS 115
            A A G  V   + +  K+   +  LGA   +V+ ++D +   +    G     + D V 
Sbjct: 164 IANAAGATVIATTRTSEKRDALLA-LGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVG 222

Query: 116 AVHPLMP-LIGLLKSQGKLVLLGAPEKPLELPAFPLLTG 153
              P    L   L   G LV+ GA     E   FPL   
Sbjct: 223 G--PQFAKLADALAPGGTLVVYGAL--SGEPTPFPLKAA 257

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 17/147 (11%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
                 V  +P+G   +  A      +T Y  L   G  +PG  V V    GG+G  A +
Sbjct: 98  NVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQ 157

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EM-QAAMGTMDGIIDTVSA 116
             K +   VTV+ T+ + K EA++  G    +  R QD   E+ + +   +D ++D    
Sbjct: 158 LCKTVPN-VTVVGTASASKHEALKENGVTHVIDYRTQDYVEEVKKISPEGVDIVLD---- 212

Query: 117 VHPLMP-----LIGLLKSQGKLVLLGA 138
              L          LLK  G+LV+ GA
Sbjct: 213 --ALGGEDTRKSYDLLKPMGRLVVYGA 237

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 8/144 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAV 59
           +VA    ++ +P+    +  A L    +T +  L  Y    PG  V        +G + +
Sbjct: 97  VVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLI 156

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTV 114
           + AK +G K   +     +  E ++ LGAD  + S  +D  Q              +D V
Sbjct: 157 QLAKLLGFKTINVVRRDEQVEE-LKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAV 215

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGA 138
                   L   L+  G LV  G 
Sbjct: 216 GGESAT-RLARSLRPGGTLVNYGL 238

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
           VA +  V+ IP+G   +  A +  A +T +  L+ +G  K G  V +  G  G+G  A +
Sbjct: 100 VAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQ 159

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM 100
            A+  G   T+I+TS  +K +  ++L A   ++ R  DE 
Sbjct: 160 LAEKYGA-ATIITTSSEEKVDFCKKLAA--IILIRYPDEE 196

Length = 334

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 10/140 (7%)

Query: 3   ADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKF 61
           A+  + V  P      AT P  C+  T  + L   G+   G  V V G  GG+G   V+ 
Sbjct: 141 AENAYPVNSPLSDVELATFP--CSYSTAENMLERAGV-GAGETVLVTGASGGVGSALVQL 197

Query: 62  AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV--HP 119
           AK  G  V  +    + K EAV  LGAD+  + RD   +  A       +D V+ V   P
Sbjct: 198 AKRRGAIVIAV-AGAA-KEEAVRALGADTV-ILRDAPLLADAKALGGEPVDVVADVVGGP 254

Query: 120 LMP-LIGLLKSQGKLVLLGA 138
           L P L+ LL+  G+ V  GA
Sbjct: 255 LFPDLLRLLRPGGRYVTAGA 274

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 43  GMHVGVVGLGGLG-HVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ 101
           G  V +VGLG +G  +A + AKA G++V  +  S       V+ +           DE+ 
Sbjct: 134 GKTVLIVGLGDIGREIA-RRAKAFGMRVIGVRRSGRPAPPVVDEV--------YTPDELD 184

Query: 102 AAMGTMDGII 111
             +   D ++
Sbjct: 185 ELLPEADYVV 194

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 4/110 (3%)

Query: 48  VVGLGGLGHVAVKFAKAMGVKVTVISTS--PSKKSEAVERLGADSFLVSRDQDEMQAAMG 105
           V+G G +G +A    +  G +V V++    P  K++ VE LGA     S+        +G
Sbjct: 178 VLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVG 237

Query: 106 TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTG 153
             D II+           +  L   G ++L G P      E+    L   
Sbjct: 238 EFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRD 287

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 13/175 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  E  VV+I +  PLD    + C   T +         +PG  V V+G+GG+G  AV+
Sbjct: 144 TVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNIADVRPGDTVVVMGIGGVGINAVQ 203

Query: 61  FAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQDEMQAAM----GTM-DGIIDTV 114
            A   G +  VI+  P + K E   + GA     S + + +Q       G   D  I TV
Sbjct: 204 GAAVAGAR-KVIAVDPVEFKREQALKFGATHAFASME-EAVQLVRELTNGQGADKTIITV 261

Query: 115 SAVHPLM--PLIGLLKSQGKLVL--LGAPEK-PLELPAFPLLTGRKIVGGSLIGG 164
             V        +   +  G++V+  LG      +++  F L   +K + G+L GG
Sbjct: 262 GEVDGEHIAEALSATRKGGRVVVTGLGPMADVDVKVNLFELTLLQKELQGTLFGG 316

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 15/143 (10%)

Query: 8   VVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKA 64
           V+++P+    +  A   PL C      +  R  G+ KPG  V V+G G +G +    AKA
Sbjct: 133 VLKLPDNVSFEEAALVEPLAC----CINAQRKAGI-KPGDTVLVIGAGPIGLLHAMLAKA 187

Query: 65  MG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVSAVH 118
            G  KV V   +  +   A ++LGAD  + + ++D ++      DG     +I    +  
Sbjct: 188 SGARKVIVSDLNEFRLEFA-KKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVATGSPE 246

Query: 119 PLMPLIGLLKSQGKLVLLGAPEK 141
                + L++  G+++  G   K
Sbjct: 247 AQAQALELVRKGGRILFFGGLPK 269

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 14/169 (8%)

Query: 2   VADEHFVVRI-PEGAPLDATAPLL-CAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVA 58
           ++D   + ++ P  APL A   +L   G+T Y  L   G  K G  V V    G +G V 
Sbjct: 108 ISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVV 167

Query: 59  VKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD--EM--QAAMGTMDGIIDTV 114
            + AK  G +V  I+    K     E LG D+ +  + +D  +   +A    +D   + V
Sbjct: 168 GQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENV 227

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGA------PEKPLELPAFPLLTGRKIV 157
                L  ++ LL    ++ + GA      PE P      PLL  +++ 
Sbjct: 228 GGEV-LDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLR 275

Length = 340

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 41  KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM 100
             G  V VVG G +G   ++ AKA G +V V+     +  E    LGAD  +   D+D  
Sbjct: 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERL-EFARELGADDTINVGDEDVA 216

Query: 101 QAAMGTMDG-----IIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELP 146
                  DG     +ID       +   + L+   G++VL+G  + P+  P
Sbjct: 217 ARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFP 267

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 41.7 bits (99), Expect = 6e-05
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV 83
          + P    G +  G  VG++GLG +G    +  KA G+KV      P  ++EA+
Sbjct: 23 WRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMKVIAYDRYPKAEAEAL 75

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 15/164 (9%)

Query: 8   VVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKA 64
           +  +PE   L+A A   PL  A   V          +PG  V V G G +G +A + AK 
Sbjct: 131 LHELPENLSLEAAALTEPLAVAVHAVAERSGI----RPGDTVVVFGPGPIGLLAAQVAKL 186

Query: 65  MGVKVTVISTSPSKKSEAV-ERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVSAVH 118
            G  V V+ T   +    V + LGAD+      +D  +      DG     +I+   AV 
Sbjct: 187 QGATVVVVGTEKDEVRLDVAKELGADAVNGGE-EDLAELVNEITDGDGADVVIECSGAVP 245

Query: 119 PLMPLIGLLKSQGKLVLLG-APEKPLELPAFPLLTGRKIVGGSL 161
            L   + LL+  G++V +G        +    ++     V GS 
Sbjct: 246 ALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSR 289

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 42.0 bits (100), Expect = 8e-05
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 14/103 (13%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-----KPGMHVGV-VGLGGLG 55
           V D   VV IP+G   +  A +    +T Y     Y L      +PG  V +    GG+G
Sbjct: 63  VTDARLVVPIPDGWSFEEAATVPVVFLTAY-----YALVDLARLRPGESVLIHAAAGGVG 117

Query: 56  HVAVKFAKAMGVKVTVISTSPSKKSEAVERLG--ADSFLVSRD 96
             A++ A+ +G +V   + SP K+ + +  LG   D    SRD
Sbjct: 118 QAAIQLARHLGAEVFATAGSPEKR-DFLRALGIPDDHIFSSRD 159

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 42.0 bits (100), Expect = 9e-05
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 8   VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMG 66
           +V++P+G   +  A LL  G+T +  LR     KPG  V V    GG+G +  ++AKA+G
Sbjct: 102 LVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALG 161

Query: 67  VKVTVIST-SPSKKSEAVERLGADSFLVSRDQD 98
              TVI T S  +K+E     GAD  +  RD+D
Sbjct: 162 --ATVIGTVSSEEKAELARAAGADHVINYRDED 192

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 21/186 (11%)

Query: 2   VADEHFVVRIPEGAPLD--ATAP--LLCAGITVYS----PLRFYGLDKPGMHVGVVGLGG 53
           VAD     +IP+    +  AT P  L+ A + ++     PL             V+  GG
Sbjct: 104 VADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGG 163

Query: 54  ---LGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD----QDEMQAAMGT 106
              +G +A++ AK  G K  VI+T+  K  + V+ LGAD+     D    +D   A  G 
Sbjct: 164 SSSVGTLAIQLAKLAGYK--VITTASPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGK 221

Query: 107 MDGIIDTVSAVHPLMPLIGLLKS--QGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGG 164
           +   +D +S           L     GKLV L    +  E      +  + ++G ++ G 
Sbjct: 222 LRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEETEPR--KGVKVKFVLGYTVFGE 279

Query: 165 LKETQE 170
           + E +E
Sbjct: 280 IPEDRE 285

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-----KPGMHVGVV-GLGGL 54
           +  D   VV+IP+    +  A L  A +T Y     Y L      + G  V +    GG+
Sbjct: 67  VRVDARLVVKIPDSLSFEEAATLPVAYLTAY-----YALVDLARLQKGESVLIHAAAGGV 121

Query: 55  GHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADSFLVSRD 96
           G  A++ A+ +G +V     S  K+    E  G  D    SRD
Sbjct: 122 GQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRD 164

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 62/219 (28%), Positives = 91/219 (41%), Gaps = 28/219 (12%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V DE  V +I   APL+    + C   T Y          PG    V GLGG+G  A+  
Sbjct: 150 VVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMG 209

Query: 62  AKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQD----EMQAAM--GTMD------ 108
            KA G  ++  +  +  K ++A E LGA   +  +D      E+   M  G +D      
Sbjct: 210 CKAAGASRIIAVDINKDKFAKAKE-LGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVI 268

Query: 109 GIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGRKIVGGSLIGGLK 166
           G +DT+ A      L    +  G  V++G P     L   P  LLTGR    G++ GG K
Sbjct: 269 GRLDTMKAA-----LASCHEGYGVSVIVGVPPSSQNLSINPMLLLTGR-TWKGAVFGGWK 322

Query: 167 ETQEM----IDFAAKH-NIRADI-EVIPADYVNTAMERL 199
               +     D+ AK  N+   I   +P + +N   + L
Sbjct: 323 SKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLL 361

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 20/221 (9%)

Query: 5   EHFVVRIPEGAPLD--ATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKF 61
              ++ IP+    +  A APL    +T +  L      +PG  V V G G G+G  A++ 
Sbjct: 129 ARNLLPIPDNLSFEEAAAAPL--TFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQI 186

Query: 62  AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM------QAAMGTMDGIIDTVS 115
           AK  G  V   + S  K   A E LGAD +++   +++             +D +++ V 
Sbjct: 187 AKLFGATVIATAGSEDKLERAKE-LGAD-YVIDYRKEDFVREVRELTGKRGVDVVVEHVG 244

Query: 116 AVHPLMPLIGLLKSQGKLVLLGA---PEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMI 172
           A       +  L   G+LV  GA    E P++L          I+ GS +G   E  E +
Sbjct: 245 AAT-WEKSLKSLARGGRLVTCGATTGYEAPIDL-RHVFWRQLSIL-GSTMGTKAELDEAL 301

Query: 173 DFAAKHNIRADIE-VIPADYVNTAMERLAKADVRYRFVIDV 212
               +  ++  I+ V P +    A  RL   +   + V+  
Sbjct: 302 RLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 40/143 (27%), Positives = 54/143 (37%), Gaps = 6/143 (4%)

Query: 8   VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV 67
           +V +P+  P    AP  CA  TV + L   G D  G  V VVG G LG  A   A A G 
Sbjct: 87  IVPVPDDLPDAVAAPAGCATATVMAALEAAG-DLKGRRVLVVGAGMLGLTAAAAAAAAGA 145

Query: 68  KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM---GTMDGIIDTVSAVHPLMPLI 124
              V +     + E     GA +        E Q  +     +D  ++   A   +   +
Sbjct: 146 ARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACL 205

Query: 125 GLLKSQGKLVLLG--APEKPLEL 145
             L   G  VL G   P  P+ L
Sbjct: 206 ESLDVGGTAVLAGSVFPGGPVAL 228

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 49/192 (25%), Positives = 79/192 (41%), Gaps = 24/192 (12%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-KPGMHVGVVGLGGLGHVAVK 60
           V D   VV+I   APL   + L C G++      +   + + G  V + GLG +G    +
Sbjct: 158 VLDSACVVKIDPNAPLKKMSLLSC-GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAE 216

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDE------MQAAMGTMD----- 108
            A+A G  K+  +  +P K  +  E +G   F+  +D D+       +   G +D     
Sbjct: 217 GARARGASKIIGVDINPEKFEKGKE-MGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275

Query: 109 -GIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGRKIVGGSLIGGL 165
            G ++ +         +      G  VLLG    P  LP  P  L  GR I  GS+ G  
Sbjct: 276 AGNVEVLREA-----FLSTHDGWGLTVLLGIHPTPKMLPLHPMELFDGRSIT-GSVFGDF 329

Query: 166 KETQEMIDFAAK 177
           K   ++ + A +
Sbjct: 330 KGKSQLPNLAKQ 341

Length = 381

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 29  TVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA 88
             + PL F G D  G  +G++G G +G    + AK  G++  ++  S ++K EA + LGA
Sbjct: 136 VAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMR--ILYYSRTRKPEAEKELGA 193

Query: 89  D 89
           +
Sbjct: 194 E 194

Length = 333

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 41  KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD 96
           K G  V V+G GG+G   V+ AKAMG  V  I   P  K E ++  GAD  L  +D
Sbjct: 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE-KLEMMKGFGADLTLNPKD 219

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVK 60
           VAD   +  +P+G  L+A   ++  G T    L    L  PG  V V    GGLG + V+
Sbjct: 103 VADVDSLHPVPDGLDLEAAVAVVHDGRTALGLLDLATL-TPGDVVLVTAAAGGLGSLLVQ 161

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGAD 89
            AKA G  V   +  P  K+  V  LGAD
Sbjct: 162 LAKAAGATVVGAAGGP-AKTALVRALGAD 189

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 8   VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV 67
           V +I   APLD    L C   T Y  +      +PG  V V GLG +G   ++ AKA G 
Sbjct: 152 VAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGA 211

Query: 68  -KVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAMGTM-DGIID 112
            ++  I  +P K  E  ++ GA   +  +D D+ +Q  +  M DG +D
Sbjct: 212 SRIIGIDINPDKF-ELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVD 258

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 33  PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD 89
              F G +  G  VG+VGLG +G    K  +A G+K  V+    ++K E  E LG  
Sbjct: 130 WAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGMK--VLYYDRTRKPEPEEDLGFR 184

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 39.0 bits (91), Expect = 9e-04
 Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 18/212 (8%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V  E  + +I   APL+    L C   T    +      + G  V V GLGG+G   ++ 
Sbjct: 145 VVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQG 204

Query: 62  AKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDE--MQAAMGTMDGIID-TVSAV 117
           A+     ++  I  +P+ K E  ++LGA   +   D D+   +  +   DG +D +   +
Sbjct: 205 ARMAKASRIIAIDINPA-KFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263

Query: 118 HPLMPLIGLL----KSQGKLVLLGAPEKPLELPA--FPLLTGRKIVGGSLIGGLK---ET 168
             +  +   L    K  G+ +++G      E+    F L+TGR +  GS  GG+K   E 
Sbjct: 264 GNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVTGR-VWRGSAFGGVKGRTEL 322

Query: 169 QEMIDFAAKHNIRAD---IEVIPADYVNTAME 197
             +++   K  I  D      +P + +N A +
Sbjct: 323 PGIVEQYMKGEIALDDFVTHTMPLEDINEAFD 354

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 41  KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM 100
            PG  V V+G G LG +  +     G  V ++    S+K     RLG ++ L    + E 
Sbjct: 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVG-RHSEKLALARRLGVETVLPDEAESEG 212

Query: 101 QA------AMGTMDGIIDTVSAVHP 119
                   A G+  G+   +  V P
Sbjct: 213 GGFDVVVEATGSPSGLELALRLVRP 237

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVG--VV---GLGGLGH 56
           V  E+ V + P+    +  A L  AG+T +S L   G   P    G  V+   G GG+G 
Sbjct: 118 VVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGT 177

Query: 57  VAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQA--AMGTMDGIIDTV 114
            A++  KA G  VT   T  +     V+ LGAD  +   ++D  +     G  D I+DTV
Sbjct: 178 FAIQLLKAWGAHVTT--TCSTDAIPLVKSLGADDVIDYNNEDFEEELTERGKFDVILDTV 235

Query: 115 -SAVHPLMPLIGLLKSQGKLVLLGAPE 140
                     + LLK  G  V L +P 
Sbjct: 236 GGDTEKWA--LKLLKKGGTYVTLVSPL 260

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 34  LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE 84
             F G +  G  VG++GLG +G    K  KA G+KV        ++   V+
Sbjct: 133 KAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD 183

Length = 324

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV-GLGGLGHVAV 59
            V      V +PE  P     PLL +G+T    L   G  K G  V V    GG G  AV
Sbjct: 100 QVVPARHAVPVPELKP--EVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAV 157

Query: 60  KFAKAMGVKVTVIST-SPSKKSEAVERLGAD 89
           + AK  G    VI T S  +K+E ++ LG D
Sbjct: 158 QLAKLAG--CHVIGTCSSDEKAEFLKSLGCD 186

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 7/104 (6%)

Query: 50  GLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA-VERLGADSFLVSRDQD---EMQA-AM 104
           G GG+G +A++ AK +   +TVI+T+   +S A V+ LGAD  +++  QD   +++A  +
Sbjct: 158 GAGGVGSIAIQLAKQLT-GLTVIATASRPESIAWVKELGAD-HVINHHQDLAEQLEALGI 215

Query: 105 GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF 148
             +D I            +  L+  QG + L+  P++PL+L   
Sbjct: 216 EPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQEPLDLGPL 259

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)

Query: 43  GMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKSEAVERLGADSFLVSRDQ--DE 99
           G +V ++G G +G +A++ A A+G K VT I  +  +K    + LGA     SR+    +
Sbjct: 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS-EKLALAKSLGAMQTFNSREMSAPQ 219

Query: 100 MQAAMGTM--DGIIDTVSAVHPLMPL-IGLLKSQGKLVLLGAPEKPLELPA 147
           +Q+ +  +  D +I   + V   + L I +   + +L L+G     L L +
Sbjct: 220 IQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTS 270

Length = 347

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAV 59
           +     ++  +P+G      A L  AG+T    LR  G    G  V V G  GG+G  AV
Sbjct: 92  VAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGG-PLLGRRVLVTGASGGVGRFAV 150

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           + A   G  V  +  SP  ++E +  LGA   +V       + +   +D ++D+V     
Sbjct: 151 QLAALAGAHVVAVVGSP-ARAEGLRELGAAEVVVGGS----ELSGAPVDLVVDSVGG-PQ 204

Query: 120 LMPLIGLLKSQGKLVLLGA 138
           L   + LL   G +V +G+
Sbjct: 205 LARALELLAPGGTVVSVGS 223

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 32  SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER-LGAD 89
           +PL F G +  G  +G++G+G +G    + AKA G+K  ++  +  + SE  E+ LGA 
Sbjct: 133 APLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMK--ILYYNRHRLSEETEKELGAT 189

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.98
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.98
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.98
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.98
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.97
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.97
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.97
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.97
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.97
PLN02827	378	Alcohol dehydrogenase-like	99.97
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.97
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.97
PLN02740	381	Alcohol dehydrogenase-like	99.97
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	99.97
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.97
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.97
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.96
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.96
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.96
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.96
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.96
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.96
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.96
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.96
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.96
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.96
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.96
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.95
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.95
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.95
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.95
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.95
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.95
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.95
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.95
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.95
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.95
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.94
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.94
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.94
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.94
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.94
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.94
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.94
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.94
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.94
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.94
PRK10083	339	putative oxidoreductase; Provisional	99.93
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.93
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.93
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.93
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.93
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.93
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.93
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.93
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.93
PTZ00354	334	alcohol dehydrogenase; Provisional	99.93
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.93
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.93
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.93
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.93
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.93
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.93
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.93
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.92
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.92
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.92
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.92
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.92
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.92
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.92
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.92
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.92
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.92
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.92
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.92
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.92
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.92
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.92
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.91
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.91
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.91
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.91
PLN02702	364	L-idonate 5-dehydrogenase	99.91
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.91
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.91
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.9
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.9
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.9
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.9
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.9
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.9
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.9
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.9
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.9
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.9
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.9
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.89
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.89
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.89
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.88
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.88
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.88
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.88
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.88
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.88
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.87
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.87
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.87
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.87
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.87
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.86
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.86
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.86
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.86
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.85
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.82
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.69
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.69
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.61
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.04
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.0
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.96
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.95
PLN02494	477	adenosylhomocysteinase	98.92
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.89
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.81
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.8
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.68
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.55
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.46
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.44
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.42
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	98.27
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.25
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.19
PRK08324	681	short chain dehydrogenase; Validated	98.16
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.14
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	98.13
PLN03209	576	translocon at the inner envelope of chloroplast su	98.13
PRK12742	237	oxidoreductase; Provisional	98.1
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.09
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.07
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.07
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.06
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.04
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.03
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.0
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.97
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.97
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.96
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.96
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.95
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.95
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
PRK06182	273	short chain dehydrogenase; Validated	97.93
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.91
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.88
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.85
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.85
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.85
PRK08265	261	short chain dehydrogenase; Provisional	97.84
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.84
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.83
PRK05993	277	short chain dehydrogenase; Provisional	97.81
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.81
PRK05872	296	short chain dehydrogenase; Provisional	97.81
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.8
PRK08618	325	ornithine cyclodeaminase; Validated	97.8
PRK07060	245	short chain dehydrogenase; Provisional	97.8
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	97.8
PRK06057	255	short chain dehydrogenase; Provisional	97.78
PRK08339	263	short chain dehydrogenase; Provisional	97.78
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.78
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.77
PRK06139	330	short chain dehydrogenase; Provisional	97.76
PRK07109	334	short chain dehydrogenase; Provisional	97.72
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.72
PRK12939	250	short chain dehydrogenase; Provisional	97.71
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.7
PRK12829	264	short chain dehydrogenase; Provisional	97.7
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.69
PRK12367	245	short chain dehydrogenase; Provisional	97.68
PLN00203	519	glutamyl-tRNA reductase	97.67
PRK06484	520	short chain dehydrogenase; Validated	97.67
PRK07806	248	short chain dehydrogenase; Provisional	97.67
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.66
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.64
PRK05866	293	short chain dehydrogenase; Provisional	97.64
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.64
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.64
PRK05693	274	short chain dehydrogenase; Provisional	97.63
PRK07340	304	ornithine cyclodeaminase; Validated	97.63
PRK06141	314	ornithine cyclodeaminase; Validated	97.63
PRK07825	273	short chain dehydrogenase; Provisional	97.62
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.61
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.6
PRK07814	263	short chain dehydrogenase; Provisional	97.6
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.59
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.59
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.58
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.58
PRK06500	249	short chain dehydrogenase; Provisional	97.58
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.57
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.57
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.56
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.56
PRK07574	385	formate dehydrogenase; Provisional	97.56
PRK07063	260	short chain dehydrogenase; Provisional	97.56
PRK07062	265	short chain dehydrogenase; Provisional	97.55
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.55
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.54
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.54
PRK07832	272	short chain dehydrogenase; Provisional	97.53
PRK06196	315	oxidoreductase; Provisional	97.53
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.52
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.51
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.5
PRK06180	277	short chain dehydrogenase; Provisional	97.5
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.5
PLN03139	386	formate dehydrogenase; Provisional	97.49
PRK07576	264	short chain dehydrogenase; Provisional	97.49
PRK05867	253	short chain dehydrogenase; Provisional	97.49
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.49
PRK06949	258	short chain dehydrogenase; Provisional	97.48
PRK07326	237	short chain dehydrogenase; Provisional	97.48
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.47
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.47
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.47
PRK05717	255	oxidoreductase; Validated	97.47
PRK09291	257	short chain dehydrogenase; Provisional	97.46
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	97.46
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.46
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.46
PRK05854	313	short chain dehydrogenase; Provisional	97.46
PRK06194	287	hypothetical protein; Provisional	97.46
PRK07831	262	short chain dehydrogenase; Provisional	97.45
PRK06483	236	dihydromonapterin reductase; Provisional	97.45
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.44
PRK06484	520	short chain dehydrogenase; Validated	97.44
PLN02253	280	xanthoxin dehydrogenase	97.43
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.43
PRK07890	258	short chain dehydrogenase; Provisional	97.43
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.42
PRK12828	239	short chain dehydrogenase; Provisional	97.42
PRK08263	275	short chain dehydrogenase; Provisional	97.41
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.41
PRK07478	254	short chain dehydrogenase; Provisional	97.4
PRK06128	300	oxidoreductase; Provisional	97.4
PRK05876	275	short chain dehydrogenase; Provisional	97.4
PRK09242	257	tropinone reductase; Provisional	97.4
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.39
PRK09186	256	flagellin modification protein A; Provisional	97.39
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.38
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.38
PRK05884	223	short chain dehydrogenase; Provisional	97.37
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.37
PRK07677	252	short chain dehydrogenase; Provisional	97.37
PLN02928	347	oxidoreductase family protein	97.37
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.37
PRK14982	340	acyl-ACP reductase; Provisional	97.36
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.36
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.36
PRK06125	259	short chain dehydrogenase; Provisional	97.36
PRK13243	333	glyoxylate reductase; Reviewed	97.35
CHL00194	317	ycf39 Ycf39; Provisional	97.35
PRK08177	225	short chain dehydrogenase; Provisional	97.34
PRK06138	252	short chain dehydrogenase; Provisional	97.33
PRK08291	330	ectoine utilization protein EutC; Validated	97.32
PRK04148	134	hypothetical protein; Provisional	97.32
PRK07024	257	short chain dehydrogenase; Provisional	97.32
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.31
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	97.3
PRK08267	260	short chain dehydrogenase; Provisional	97.3
PRK07774	250	short chain dehydrogenase; Provisional	97.3
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	97.3
PRK08643	256	acetoin reductase; Validated	97.29
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.29
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.29
PRK07067	257	sorbitol dehydrogenase; Provisional	97.29
PRK08589	272	short chain dehydrogenase; Validated	97.29
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.29
PRK09072	263	short chain dehydrogenase; Provisional	97.29
PRK08862	227	short chain dehydrogenase; Provisional	97.28
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.28
PRK07402	196	precorrin-6B methylase; Provisional	97.27
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.27
COG2910	211	Putative NADH-flavin reductase [General function p	97.26
PRK10538	248	malonic semialdehyde reductase; Provisional	97.26
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.25
PRK06181	263	short chain dehydrogenase; Provisional	97.24
PRK04457	262	spermidine synthase; Provisional	97.24
PRK07904	253	short chain dehydrogenase; Provisional	97.24
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.24
PRK06197	306	short chain dehydrogenase; Provisional	97.24
PRK08017	256	oxidoreductase; Provisional	97.23
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.23
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	97.23
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.23
PRK05875	276	short chain dehydrogenase; Provisional	97.23
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.23
PRK07035	252	short chain dehydrogenase; Provisional	97.23
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.23
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.22
PRK06841	255	short chain dehydrogenase; Provisional	97.22
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.22
TIGR00438	188	rrmJ cell division protein FtsJ.	97.21
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.21
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.2
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	97.2
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.19
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.19
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.19
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	97.19
PLN02896	353	cinnamyl-alcohol dehydrogenase	97.18
PRK12480	330	D-lactate dehydrogenase; Provisional	97.18
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	97.18
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.18
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.18
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.18
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.17
PRK06482	276	short chain dehydrogenase; Provisional	97.17
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	97.17
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.17
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.17
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.16
PRK10258	251	biotin biosynthesis protein BioC; Provisional	97.15
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	97.15
PRK06172	253	short chain dehydrogenase; Provisional	97.14
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.14
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.14
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.12
PRK07985	294	oxidoreductase; Provisional	97.12
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	97.12
PRK07074	257	short chain dehydrogenase; Provisional	97.11
PRK06932	314	glycerate dehydrogenase; Provisional	97.11
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	97.1
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.1
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.1
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.1
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	97.1
PRK08251	248	short chain dehydrogenase; Provisional	97.09
PRK12937	245	short chain dehydrogenase; Provisional	97.09
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.09
PRK06198	260	short chain dehydrogenase; Provisional	97.09
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.08
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.08
PRK08264	238	short chain dehydrogenase; Validated	97.08
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	97.08
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	97.08
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.08
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.07
PLN02780	320	ketoreductase/ oxidoreductase	97.07
PRK06720	169	hypothetical protein; Provisional	97.07
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.06
PRK12747	252	short chain dehydrogenase; Provisional	97.06
PRK06940	275	short chain dehydrogenase; Provisional	97.06
PRK07454	241	short chain dehydrogenase; Provisional	97.06
PRK08703	239	short chain dehydrogenase; Provisional	97.06
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.05
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.05
PRK06179	270	short chain dehydrogenase; Provisional	97.05
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.05
PRK08328	231	hypothetical protein; Provisional	97.04
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	97.04
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	97.04
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.04
PRK06436	303	glycerate dehydrogenase; Provisional	97.03
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	97.02
PRK06823	315	ornithine cyclodeaminase; Validated	97.02
PRK08628	258	short chain dehydrogenase; Provisional	97.02
PRK06914	280	short chain dehydrogenase; Provisional	97.01
PRK05650	270	short chain dehydrogenase; Provisional	97.01
PLN03075	296	nicotianamine synthase; Provisional	97.0
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.0
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	97.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.0
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.99
PRK09135	249	pteridine reductase; Provisional	96.99
PRK07791	286	short chain dehydrogenase; Provisional	96.99
PRK07775	274	short chain dehydrogenase; Provisional	96.99
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.99
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.98
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.98
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.98
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	96.97
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	96.97
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.96
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.96
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.95
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.95
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.95
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	96.95
PRK06487	317	glycerate dehydrogenase; Provisional	96.95
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.95
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.95
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.94
PRK08278	273	short chain dehydrogenase; Provisional	96.93
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.93
PRK08317	241	hypothetical protein; Provisional	96.93
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	96.92
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.92
PRK06114	254	short chain dehydrogenase; Provisional	96.9
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	96.9
PRK07102	243	short chain dehydrogenase; Provisional	96.9
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.89
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.89
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.89
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.89
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.88
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.88
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	96.88
PRK07856	252	short chain dehydrogenase; Provisional	96.88
PRK06398	258	aldose dehydrogenase; Validated	96.88
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	96.88
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.87
PRK06101	240	short chain dehydrogenase; Provisional	96.87
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.87
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.86
PRK08303	305	short chain dehydrogenase; Provisional	96.86
KOG0725	270	consensus Reductases with broad range of substrate	96.85
PRK00811	283	spermidine synthase; Provisional	96.85
PRK06953	222	short chain dehydrogenase; Provisional	96.85
PLN02366	308	spermidine synthase	96.85
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.85
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.84
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.84
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.83
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	96.83
PRK08605	332	D-lactate dehydrogenase; Validated	96.82
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.81
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	96.81
PRK06046	326	alanine dehydrogenase; Validated	96.81
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.8
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.79
PRK07577	234	short chain dehydrogenase; Provisional	96.79
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.79
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.79
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.78
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.78
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.77
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.77
PLN02686	367	cinnamoyl-CoA reductase	96.76
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	96.76
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.75
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.75
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.75
COG4122	219	Predicted O-methyltransferase [General function pr	96.75
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	96.74
PLN02650	351	dihydroflavonol-4-reductase	96.74
PRK12746	254	short chain dehydrogenase; Provisional	96.74
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.74
PRK10669	558	putative cation:proton antiport protein; Provision	96.74
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.74
PLN02214	342	cinnamoyl-CoA reductase	96.73
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.73
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.73
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.73
PRK05855	582	short chain dehydrogenase; Validated	96.72
PRK07069	251	short chain dehydrogenase; Validated	96.72
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.71
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.7
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	96.7
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.7
PRK08226	263	short chain dehydrogenase; Provisional	96.7
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.7
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	96.7
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	96.69
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	96.69
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.69
PRK08219	227	short chain dehydrogenase; Provisional	96.69
PRK14967	223	putative methyltransferase; Provisional	96.69
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.68
PRK11207	197	tellurite resistance protein TehB; Provisional	96.68
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.67
PLN02244	340	tocopherol O-methyltransferase	96.67
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.66
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.66
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.66
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.66
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.66
PLN02427	386	UDP-apiose/xylose synthase	96.65
COG3268	382	Uncharacterized conserved protein [Function unknow	96.64
PRK09134	258	short chain dehydrogenase; Provisional	96.64
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.63
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.63
PRK10637	457	cysG siroheme synthase; Provisional	96.63
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	96.63
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.62
PRK04266	226	fibrillarin; Provisional	96.62

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.5e-38  Score=245.63  Aligned_cols=210  Identities=47%  Similarity=0.710  Sum_probs=193.5

Q ss_pred             CcccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         1 ~~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      +++|+.++++||+++++++||++.|++.|.|+++++.. ++||++|+|+|.|++|.+++|+|+++|++|+++++++++++
T Consensus       126 v~v~~~~~~~iP~~~d~~~aApllCaGiT~y~alk~~~-~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e  204 (339)
T COG1064         126 VVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKAN-VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLE  204 (339)
T ss_pred             EEEchHHeEECCCCCChhhhhhhhcCeeeEeeehhhcC-CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHH
Confidence            46899999999999999999999999999999999865 79999999999999999999999999999999999998876


Q ss_pred             HHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC-CC-CCCCchhhhcCCeEEE
Q 027664           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KP-LELPAFPLLTGRKIVG  158 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~-~~~~~~~~~~~~~~~~  158 (220)
                      .+ +++|++++++..+++..+...+.+|+++|+++ +..++.+++.|+++|+++++|... .. ..++.+.++.+++++.
T Consensus       205 ~a-~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~  282 (339)
T COG1064         205 LA-KKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIV  282 (339)
T ss_pred             HH-HHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEE
Confidence            66 78999999997766666555556999999999 668999999999999999999985 44 5688888999999999


Q ss_pred             EEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          159 GSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      |+..++..++++++++..+|+++|.+ +.++++++++|++.|++++..||+|+++.
T Consensus       283 GS~~g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~  338 (339)
T COG1064         283 GSLVGTRADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDMS  338 (339)
T ss_pred             EEecCCHHHHHHHHHHHHhCCceeeEEeeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence            99999999999999999999999999 79999999999999999999999999875

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9.9e-36  Score=223.69  Aligned_cols=215  Identities=60%  Similarity=0.935  Sum_probs=200.2

Q ss_pred             CcccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         1 ~~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      +++++.++++||++++.+.||++.|++.|+|.+|.+.+ +.||+++-|.|+|++|.+++|+||++|.+|++++++..+++
T Consensus       141 ~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g-~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kke  219 (360)
T KOG0023|consen  141 AVVDEVFAIKIPENLPLASAAPLLCAGITVYSPLKRSG-LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKE  219 (360)
T ss_pred             EEEeeeeEEECCCCCChhhccchhhcceEEeehhHHcC-CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHH
Confidence            36789999999999999999999999999999999887 78999999999977999999999999999999999998899


Q ss_pred             HHHHHcCCCEEEcCC-CHHHHHHhcCCccEEEEcCC--CcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEE
Q 027664           81 EAVERLGADSFLVSR-DQDEMQAAMGTMDGIIDTVS--AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIV  157 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~d~v~d~~g--~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  157 (220)
                      ++.+.||++..++.. +++.++++.+-.|.++|++.  ....++.++..++.+|++|++|.+..+..++.+++..+.+.+
T Consensus       220 ea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I  299 (360)
T KOG0023|consen  220 EAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSI  299 (360)
T ss_pred             HHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEE
Confidence            999999999998887 67778877777788888777  555799999999999999999999888999999999999999


Q ss_pred             EEEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 027664          158 GGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~~  216 (220)
                      .|+..+++.+.++++++.++|.+++.++..+++++++||++|++++..+|.|+++..+.
T Consensus       300 ~GS~vG~~ket~E~Ldf~a~~~ik~~IE~v~~~~v~~a~erm~kgdV~yRfVvD~s~~~  358 (360)
T KOG0023|consen  300 KGSIVGSRKETQEALDFVARGLIKSPIELVKLSEVNEAYERMEKGDVRYRFVVDVSKSL  358 (360)
T ss_pred             EeeccccHHHHHHHHHHHHcCCCcCceEEEehhHHHHHHHHHHhcCeeEEEEEEccccc
Confidence            99999999999999999999999999999999999999999999999999999998653

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=1.6e-34  Score=231.85  Aligned_cols=215  Identities=72%  Similarity=1.149  Sum_probs=189.5

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++|+++|+++++.+.|+|+++.....+++|++|+|.|+|++|++++|+|+.+|++|++++.+++++.+
T Consensus       143 ~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~  222 (360)
T PLN02586        143 VVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDE  222 (360)
T ss_pred             EEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhh
Confidence            57888999999999999999999999999999977766689999999999999999999999999999988888777777


Q ss_pred             HHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEe
Q 027664           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSL  161 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  161 (220)
                      +++++|++.++++.+.+.+++..+++|++||++|....++.++++++++|+++.+|......+++...++.++..+.+++
T Consensus       223 ~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~  302 (360)
T PLN02586        223 AINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSD  302 (360)
T ss_pred             HHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcC
Confidence            77889999999877665566666689999999998667889999999999999999765556777777788888898988


Q ss_pred             cCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 027664          162 IGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       162 ~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~~  216 (220)
                      .++..+++.+++++++|++++.+++|+|+++++||+.+.+++..||+|+.+.+++
T Consensus       303 ~~~~~~~~~~~~li~~g~i~~~~~~~~l~~~~~A~~~~~~~~~~gkvvi~~~~~~  357 (360)
T PLN02586        303 IGGIKETQEMLDFCAKHNITADIELIRMDEINTAMERLAKSDVRYRFVIDVANSL  357 (360)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCcEEEEeHHHHHHHHHHHHcCCCcEEEEEEccccc
Confidence            8778889999999999999987788999999999999999988899999985543

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=6.1e-34  Score=229.29  Aligned_cols=214  Identities=65%  Similarity=1.068  Sum_probs=187.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcC-CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL-DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~-~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++|+++++.+.|+|+++..... .++|++|+|.|+|++|++++|+|+++|++|++++.+++++.
T Consensus       137 ~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~  216 (375)
T PLN02178        137 VVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKER  216 (375)
T ss_pred             EEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhH
Confidence            57888999999999999999999999999999876653 36899999999999999999999999999999888876655


Q ss_pred             HHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEE
Q 027664           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGS  160 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  160 (220)
                      ++++++|+++++++.+.+.+.+.++++|++|||+|.+..+..++++++++|+++.+|......+++...++.+++++.|+
T Consensus       217 ~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~  296 (375)
T PLN02178        217 EAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGS  296 (375)
T ss_pred             HHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEe
Confidence            66688999999987665555555568999999999876789999999999999999986555677778888899999999


Q ss_pred             ecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeCCc
Q 027664          161 LIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       161 ~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~  215 (220)
                      +.+...+++++++++++|++++.+++|+|+++++||+.+.+++..||+|+.+.++
T Consensus       297 ~~~~~~~~~~~~~l~~~g~i~~~i~~~~l~~~~~A~~~~~~~~~~gkvvi~~~~~  351 (375)
T PLN02178        297 QIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANS  351 (375)
T ss_pred             CccCHHHHHHHHHHHHhCCCcccEEEEeHHHHHHHHHHHHcCCCceEEEEEeccc
Confidence            9888889999999999999998888899999999999999998889999998543

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9.3e-34  Score=213.53  Aligned_cols=210  Identities=22%  Similarity=0.272  Sum_probs=183.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      +.++++|+|+||++|++++|.+. ...++++|.++.+ +++|++|||+|+|++|+.+...||++|+ +|++++..+.|++
T Consensus       131 ~~~~dfc~KLPd~vs~eeGAl~e-PLsV~~HAcr~~~-vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle  208 (354)
T KOG0024|consen  131 VHPADFCYKLPDNVSFEEGALIE-PLSVGVHACRRAG-VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLE  208 (354)
T ss_pred             EechHheeeCCCCCchhhccccc-chhhhhhhhhhcC-cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHH
Confidence            56899999999999999998655 4899999998776 8999999999999999999999999999 9999999998887


Q ss_pred             HHHHHcCCCEEEcCCCH---HHHHH----hcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhh
Q 027664           81 EAVERLGADSFLVSRDQ---DEMQA----AMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~---~~~~~----~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  151 (220)
                      .+ +++|++.+.+....   +.+.+    ..+  .+|++|||+|....++.++.+++.+|++++.|......+|+..++.
T Consensus       209 ~A-k~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~  287 (354)
T KOG0024|consen  209 LA-KKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVA  287 (354)
T ss_pred             HH-HHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhh
Confidence            76 56999988766552   22222    222  4999999999988899999999999999999988888999999999


Q ss_pred             cCCeEEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCC-ceeEEEEeCC
Q 027664          152 TGRKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADV-RYRFVIDVAN  214 (220)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~-~gk~vv~~~~  214 (220)
                      .+++.+.|++.+...+|+.+++++++|++...  + ++|+++++.|||+.+.+++. .-|+++..++
T Consensus       288 ~kE~~~~g~fry~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~  354 (354)
T KOG0024|consen  288 LKEVDLRGSFRYCNGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE  354 (354)
T ss_pred             hheeeeeeeeeeccccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence            99999999999998899999999999998865  5 89999999999999988774 3688887653

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=3e-33  Score=224.45  Aligned_cols=214  Identities=55%  Similarity=0.922  Sum_probs=190.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      ++|...++++|+++++++++++++.+.|||+++......++|++++|+|+|++|++++|+|+++|+++++++.+++++..
T Consensus       140 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~  219 (357)
T PLN02514        140 VVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREE  219 (357)
T ss_pred             EEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            56788999999999999999999999999999987776679999999999999999999999999999999888888777


Q ss_pred             HHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEe
Q 027664           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSL  161 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  161 (220)
                      +++.+|++.++++.+.+.+.+.++++|++|||+|....+..++++++++|+++.+|......+++...++.+++++.|++
T Consensus       220 ~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  299 (357)
T PLN02514        220 ALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSF  299 (357)
T ss_pred             HHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEe
Confidence            77789998888776655566666689999999997657889999999999999999876556777778888999999999


Q ss_pred             cCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeCCc
Q 027664          162 IGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       162 ~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~  215 (220)
                      .....+++++++++++|++.+.+++|+++++.+||+.+++++..||+++.++.+
T Consensus       300 ~~~~~~~~~~~~~~~~g~l~~~i~~~~l~~~~~A~~~~~~~~~~gk~v~~~~~~  353 (357)
T PLN02514        300 IGSMKETEEMLEFCKEKGLTSMIEVVKMDYVNTAFERLEKNDVRYRFVVDVAGS  353 (357)
T ss_pred             cCCHHHHHHHHHHHHhCCCcCcEEEEcHHHHHHHHHHHHcCCCceeEEEEcccc
Confidence            888889999999999999887678899999999999999998889999998654

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=221.81  Aligned_cols=209  Identities=29%  Similarity=0.456  Sum_probs=178.7

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||+++++++|||+++.....+++|++|||+|+ |++|.+++|+||++|+.+++++.++++.+
T Consensus       102 ~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~  181 (326)
T COG0604         102 VVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE  181 (326)
T ss_pred             EecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH
Confidence            57899999999999999999999999999999999888999999999996 99999999999999988888888877777


Q ss_pred             HHHHHcCCCEEEcCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhhcC
Q 027664           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~  153 (220)
                       +++++|+++++++.+.   +.++++++  ++|+|||++|+. .+...+++++++|+++.+|...+  ...++...++.+
T Consensus       182 -~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~-~~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~  259 (326)
T COG0604         182 -LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGD-TFAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGK  259 (326)
T ss_pred             -HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCHH-HHHHHHHHhccCCEEEEEecCCCCCccccCHHHHhhc
Confidence             6789999999998875   35666665  699999999998 68899999999999999999873  355666777888


Q ss_pred             CeEEEEEecCCH------HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHc-CCCceeEEEEe
Q 027664          154 RKIVGGSLIGGL------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAK-ADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~~~~~~~~~~------~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~-~~~~gk~vv~~  212 (220)
                      .+...+......      +.+.++.+++++|.+++.+ .+|+|++..++...... ++..||+|+++
T Consensus       260 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~  326 (326)
T COG0604         260 RLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV  326 (326)
T ss_pred             cEEEEEecceecchHHHHHHHHHHHHHHHcCCCcceeccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence            888888776533      5577799999999999999 79999996555544433 47789999974

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-31  Score=212.00  Aligned_cols=207  Identities=20%  Similarity=0.260  Sum_probs=173.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      +++++.++++|+++++++++ +...+.++|+++.+.. ..+|++|+|+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       131 ~v~~~~~~~~P~~l~~~~aa-~~~~~~~a~~al~~~~-~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~  208 (343)
T PRK09880        131 VVDTAQCIPYPEKADEKVMA-FAEPLAVAIHAAHQAG-DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLS  208 (343)
T ss_pred             EechHHeEECCCCCCHHHHH-hhcHHHHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence            57888999999999987655 5567789999998776 4689999999999999999999999999 6888888887776


Q ss_pred             HHHHHcCCCEEEcCCCHHH--HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEE
Q 027664           81 EAVERLGADSFLVSRDQDE--MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVG  158 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~--~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  158 (220)
                      .+ +++|+++++++.+.+.  +.+..+++|++|||+|.+..++.++++++++|+++.+|......+++...++.+++++.
T Consensus       209 ~a-~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~  287 (343)
T PRK09880        209 LA-REMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLK  287 (343)
T ss_pred             HH-HHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEE
Confidence            55 7899999998876432  11222369999999998767889999999999999999866556777788889999999


Q ss_pred             EEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          159 GSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +++.. ..+++.+++++++|++++.  + ++|+++++++|++.+.+++..||+++.+
T Consensus       288 g~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        288 GSFRF-TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             EEeec-cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence            98754 4678999999999999863  4 8999999999999999887779999864

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.98  E-value=3.6e-31  Score=211.62  Aligned_cols=204  Identities=20%  Similarity=0.180  Sum_probs=171.1

Q ss_pred             eCCCCCCcc-ccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC
Q 027664           10 RIPEGAPLD-ATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG   87 (220)
Q Consensus        10 ~ip~~~s~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g   87 (220)
                      ++|++++++ +||++++++.|||+++.....+++|++|||+|+ |++|++++|+|+++|++|++++.++++++.+.+.+|
T Consensus       125 ~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lG  204 (348)
T PLN03154        125 QLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLG  204 (348)
T ss_pred             cCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcC
Confidence            459999986 688999999999999987777899999999998 999999999999999999999888877766644799


Q ss_pred             CCEEEcCCCH----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CC-----CCchhhhcCCeE
Q 027664           88 ADSFLVSRDQ----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LE-----LPAFPLLTGRKI  156 (220)
Q Consensus        88 ~~~~~~~~~~----~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~-----~~~~~~~~~~~~  156 (220)
                      ++.++++.+.    +.+++.++ ++|++|||+|+. .+..++++++++|+++.+|...+. .+     ++...++.++++
T Consensus       205 a~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~  283 (348)
T PLN03154        205 FDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGD-MLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIR  283 (348)
T ss_pred             CCEEEECCCcccHHHHHHHHCCCCcEEEEECCCHH-HHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccce
Confidence            9999988642    23444444 799999999986 789999999999999999976432 11     245567888999


Q ss_pred             EEEEecCC-----HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          157 VGGSLIGG-----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       157 ~~~~~~~~-----~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      +.|++.+.     .+.++++++++++|++++.+ .+|+|+++++|++.+++++..||+|+++.+
T Consensus       284 i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~~~  347 (348)
T PLN03154        284 MQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIEDMSEGLESAPAALVGLFSGKNVGKQVIRVAK  347 (348)
T ss_pred             EEEEEHHHHHHHHHHHHHHHHHHHHCCCccCceecccCHHHHHHHHHHHHcCCCCceEEEEecC
Confidence            99987643     24578899999999999887 689999999999999999999999999864

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.98  E-value=4.8e-31  Score=212.83  Aligned_cols=208  Identities=25%  Similarity=0.411  Sum_probs=177.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++|+++++.+.|||+++.....+++|++|+|.|+|++|++++|+|+..|+ +|++++.++++++
T Consensus       151 ~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~  230 (371)
T cd08281         151 VVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLA  230 (371)
T ss_pred             EecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence            567889999999999999999999999999998666668999999999999999999999999999 6988888887766


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~  154 (220)
                      .+ +++|++.++++.+.+   .+++.++ ++|++|||+|....++.++++++++|+++.+|....  ..+++...++.++
T Consensus       231 ~a-~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~  309 (371)
T cd08281         231 LA-RELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEE  309 (371)
T ss_pred             HH-HHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcC
Confidence            55 789999999887654   3444444 799999999987678999999999999999997643  3466777788999


Q ss_pred             eEEEEEecCC---HHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          155 KIVGGSLIGG---LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       155 ~~~~~~~~~~---~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      +++.|++...   ..+++.+++++++|++++.  + ++|+|+++++||+.+++++..+|+|+
T Consensus       310 ~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~  371 (371)
T cd08281         310 RTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL  371 (371)
T ss_pred             CEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence            9999988653   5678899999999999864  4 79999999999999999988777653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.98  E-value=1.6e-31  Score=194.92  Aligned_cols=213  Identities=21%  Similarity=0.259  Sum_probs=180.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .+|...++++|+.+++.+||++...++|||..++++..+++|++|||+.+ |++|+++.|+++..|+.+|.+..+.++++
T Consensus       106 ~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~  185 (336)
T KOG1197|consen  106 TVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHE  185 (336)
T ss_pred             cccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHH
Confidence            47888999999999999999999999999999999999999999999975 99999999999999999999999998887


Q ss_pred             HHHHHcCCCEEEcCCCHHH---HHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQDE---MQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~---~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ ++.|+++.++++.++.   +.++++  |+|+++|.+|.+ .+...+++|++.|.+|.+|...+. ..++...+-.++
T Consensus       186 ~a-kenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~d-t~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~  263 (336)
T KOG1197|consen  186 IA-KENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSVGKD-TFAKSLAALKPMGKMVSFGNASGLIDPIPLNQLSPKA  263 (336)
T ss_pred             HH-HhcCCcceeeccchhHHHHHHhccCCCCceeeeccccch-hhHHHHHHhccCceEEEeccccCCCCCeehhhcChhh
Confidence            76 7899999999998865   455564  899999999998 699999999999999999987764 345555555555


Q ss_pred             eEEEEEe----cCCHHHH----HHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 027664          155 KIVGGSL----IGGLKET----QEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       155 ~~~~~~~----~~~~~~~----~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~~  216 (220)
                      +++..-.    ......|    ..++..+.+|.++++| ++|||+++.+|+..+++.+..||+++-+.++.
T Consensus       264 l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~~ypls~vadA~~diesrktvGkvlLlp~~~~  334 (336)
T KOG1197|consen  264 LQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDHVYPLSKVADAHADIESRKTVGKVLLLPGPEK  334 (336)
T ss_pred             hhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceeeeeecchHHHHHHHHHHHhhhccceEEEeCCccc
Confidence            5543321    1222333    4466778899999999 89999999999999999999999999987664

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.98  E-value=9e-31  Score=208.94  Aligned_cols=207  Identities=25%  Similarity=0.347  Sum_probs=176.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++|+++++++.|||+++.... +++|++|+|+|+|++|++++|+|+++|++ |++++.++++++
T Consensus       124 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~  202 (339)
T cd08239         124 LVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVG-VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLE  202 (339)
T ss_pred             EechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            5678899999999999999999999999999997765 78999999999999999999999999997 999888887766


Q ss_pred             HHHHHcCCCEEEcCCCHH--HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCc-hhhhcCCe
Q 027664           81 EAVERLGADSFLVSRDQD--EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA-FPLLTGRK  155 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~--~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~  155 (220)
                      .+ +++|++.++++.+.+  .+.+.++  ++|++|||+|+...+..++++++++|+++.+|.... ..++. ..++.+++
T Consensus       203 ~~-~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~  280 (339)
T cd08239         203 LA-KALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGE-LTIEVSNDLIRKQR  280 (339)
T ss_pred             HH-HHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCC-cccCcHHHHHhCCC
Confidence            55 789999999886643  3334443  799999999988666889999999999999997543 23333 45678999


Q ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          156 IVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++.|++....++++++++++.+|++++.  + ++|+++++++||+.++++. .||+|+++
T Consensus       281 ~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~-~gKvvi~~  339 (339)
T cd08239         281 TLIGSWYFSVPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE-SGKVVFVF  339 (339)
T ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCC-ceEEEEeC
Confidence            9999998888889999999999998753  4 7999999999999998875 69999875

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.97  E-value=1.9e-30  Score=206.04  Aligned_cols=202  Identities=25%  Similarity=0.309  Sum_probs=174.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      ++|+..++++|+++++++++++++.+.|||+++.. ..+++|++|||+|+|++|++++|+|+..|++|++++.++++++.
T Consensus       126 ~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~  204 (329)
T TIGR02822       126 TVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLR-ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRL  204 (329)
T ss_pred             EeccccEEECCCCCCHHHhHHHhccchHHHHHHHh-cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence            57888999999999999999999999999999976 45899999999999999999999999999999999988877655


Q ss_pred             HHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCCeEEEEE
Q 027664           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRKIVGGS  160 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~  160 (220)
                       ++++|+++++++.+..     .+++|+++++.+....+..++++++++|+++.+|...+. ..++...++.+++++.++
T Consensus       205 -a~~~Ga~~vi~~~~~~-----~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~  278 (329)
T TIGR02822       205 -ALALGAASAGGAYDTP-----PEPLDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSV  278 (329)
T ss_pred             -HHHhCCceeccccccC-----cccceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEe
Confidence             4889999998754321     237899999988777889999999999999999975432 456666778889999999


Q ss_pred             ecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEE
Q 027664          161 LIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       161 ~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      +.....++..+++++++|++++..++|+|+++++||+.+.+++..||+|+
T Consensus       279 ~~~~~~~~~~~~~l~~~g~i~~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       279 TSNTRADAREFLELAAQHGVRVTTHTYPLSEADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             ecCCHHHHHHHHHHHHhCCCeeEEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence            88777889999999999999754489999999999999999998899987

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.97  E-value=2.2e-30  Score=196.91  Aligned_cols=207  Identities=26%  Similarity=0.415  Sum_probs=184.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++++.++++++++.+++.++.+.|+..|.+.+..+..++++|++|.|.|.|++|++++|-|+..|+ ++|+++.+++|++
T Consensus       145 vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~  224 (366)
T COG1062         145 VVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLE  224 (366)
T ss_pred             eecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHH
Confidence            678999999999999999999999999999998888889999999999999999999999999999 9999999998876


Q ss_pred             HHHHHcCCCEEEcCCCH----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhhcC
Q 027664           81 EAVERLGADSFLVSRDQ----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~----~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~  153 (220)
                      .+ ++||+++++|+.+.    +.+.++++ |+|++|||+|+...+++++.++.++|+.+.+|....  .++.+++.++..
T Consensus       225 ~A-~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g  303 (366)
T COG1062         225 LA-KKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG  303 (366)
T ss_pred             HH-HhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeecc
Confidence            66 78999999999875    24566777 999999999999899999999999999999998764  356777777777


Q ss_pred             CeEEEEEecCC---HHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          154 RKIVGGSLIGG---LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       154 ~~~~~~~~~~~---~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                       .+|.|++++.   +.+++.+++++.+|+++..  + +.++|+||+|||+.|.+++.. |.|+.
T Consensus       304 -r~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi~  365 (366)
T COG1062         304 -RVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVIR  365 (366)
T ss_pred             -ceEEEEeecCCccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee-eEEec
Confidence             9999998863   5889999999999999975  4 799999999999999999874 66654

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=3.8e-30  Score=202.99  Aligned_cols=210  Identities=26%  Similarity=0.337  Sum_probs=165.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhc------CCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYG------LDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST   74 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~------~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~   74 (220)
                      ++|+..++++|+++++.+||++|.++.|||+++....      ++++|++|||+|+ |++|++++|+|++.|+..++++.
T Consensus       111 v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~  190 (347)
T KOG1198|consen  111 VVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTAC  190 (347)
T ss_pred             EcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEc
Confidence            6788999999999999999999999999999999988      8899999999986 89999999999999964444555


Q ss_pred             CccchHHHHHHcCCCEEEcCCCHHHHHHhc---C-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchh
Q 027664           75 SPSKKSEAVERLGADSFLVSRDQDEMQAAM---G-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFP  149 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~  149 (220)
                      +.++ .++++++|+++++|+++++.++...   + +||+||||+|+. .......++..+|+...++...+. .+.....
T Consensus       191 s~e~-~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg~~-~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~  268 (347)
T KOG1198|consen  191 SKEK-LELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVGGS-TLTKSLSCLLKGGGGAYIGLVGDELANYKLDD  268 (347)
T ss_pred             ccch-HHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCCCC-ccccchhhhccCCceEEEEecccccccccccc
Confidence            5444 4566899999999999976555443   2 899999999997 577777888887765555444321 1111110


Q ss_pred             ------------h-hcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          150 ------------L-LTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       150 ------------~-~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                                  . ..+...+.+......+.++.+.+++++|++++.+ +.||++++++|++.+.++...||+++.+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~  346 (347)
T KOG1198|consen  269 LWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGKIKPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKD  346 (347)
T ss_pred             chhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCcccCCcceeeeHHHHHHHHHHHhhcCCcceEEEEec
Confidence                        0 1111222333445668899999999999999998 89999999999999999888999999875

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.97  E-value=8.4e-30  Score=204.03  Aligned_cols=208  Identities=23%  Similarity=0.256  Sum_probs=178.5

Q ss_pred             cccccceEeCCC------CCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664            2 VADEHFVVRIPE------GAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus         2 ~v~~~~~~~ip~------~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      .+|++.++++|+      ++++++++++++.+.++|+++... .+++|++|+|+|+|++|++++|+|++.|++|++++.+
T Consensus       121 ~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~~~-~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~  199 (349)
T TIGR03201       121 VVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQA-GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDID  199 (349)
T ss_pred             EechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence            467888999999      899999999999999999998764 4799999999999999999999999999999999888


Q ss_pred             ccchHHHHHHcCCCEEEcCCCH---H---HHHHhcC--Ccc----EEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCC
Q 027664           76 PSKKSEAVERLGADSFLVSRDQ---D---EMQAAMG--TMD----GIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL  143 (220)
Q Consensus        76 ~~~~~~~~~~~g~~~~~~~~~~---~---~~~~~~~--~~d----~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~  143 (220)
                      +++++.+ +++|+++++++.+.   +   .++++++  ++|    ++|||+|+...++.++++++++|+++.+|......
T Consensus       200 ~~~~~~~-~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~  278 (349)
T TIGR03201       200 PEKLEMM-KGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKT  278 (349)
T ss_pred             HHHHHHH-HHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCc
Confidence            8877666 78999999987553   2   2344443  665    89999998767788999999999999999876556


Q ss_pred             CCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccc--eEEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          144 ELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRAD--IEVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++...++.++.++.|.+.....+++.+++++++|++++.  +++|+|+++++||+.+.+++..+|++++
T Consensus       279 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~g~i~~~~~i~~~~l~~~~~A~~~~~~~~~~~k~~~~  348 (349)
T TIGR03201       279 EYRLSNLMAFHARALGNWGCPPDRYPAALDLVLDGKIQLGPFVERRPLDQIEHVFAAAHHHKLKRRAILT  348 (349)
T ss_pred             ccCHHHHhhcccEEEEEecCCHHHHHHHHHHHHcCCCCcccceEEecHHHHHHHHHHHHcCCccceEEec
Confidence            6777777788889999987777889999999999999864  3789999999999999999888999885

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.97  E-value=7.4e-30  Score=205.01  Aligned_cols=208  Identities=25%  Similarity=0.323  Sum_probs=175.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      .+|++.++++|+++++++|+++++.+.++|+++.....+++|++|||+|+|++|++++|+|+..|+ +|++++.++++++
T Consensus       136 ~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~  215 (358)
T TIGR03451       136 LVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLE  215 (358)
T ss_pred             EEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            467889999999999999999999999999887766678999999999999999999999999999 5888888887666


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC--CCCCchhhhcC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--LELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~  153 (220)
                      .+ +++|++.++++.+.+   .+.+.++  ++|++|||+|++..+..++++++++|+++.+|.....  .+++...++.+
T Consensus       216 ~~-~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~  294 (358)
T TIGR03451       216 WA-REFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGR  294 (358)
T ss_pred             HH-HHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhc
Confidence            55 789999999886643   3445544  7999999999866789999999999999999986543  45666678889


Q ss_pred             CeEEEEEecC---CHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          154 RKIVGGSLIG---GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       154 ~~~~~~~~~~---~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      +.++.+++..   ...+++.+++++++|++++.  + ++|+++++++|++.+++++.. |+++.
T Consensus       295 ~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~~  357 (358)
T TIGR03451       295 GGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL-RSVVE  357 (358)
T ss_pred             CCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcc-eeEEe
Confidence            9999988643   35778999999999999864  4 899999999999999888764 77764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02827 Alcohol dehydrogenase-like

Probab=99.97  E-value=1.6e-29  Score=204.13  Aligned_cols=210  Identities=23%  Similarity=0.312  Sum_probs=174.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      .+|+..++++|+++++++++++++++.++|+++.....+++|++|||+|+|++|++++|+|+++|+ .|++++.++++++
T Consensus       153 ~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~  232 (378)
T PLN02827        153 VVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAE  232 (378)
T ss_pred             EechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            568889999999999999999999989999877665668999999999999999999999999999 5777776776665


Q ss_pred             HHHHHcCCCEEEcCCCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCCCCCCCc-hhhhc
Q 027664           81 EAVERLGADSFLVSRDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKPLELPA-FPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~-----~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~  152 (220)
                      .+ +++|++.++++.+.     +.+++.++ ++|++|||+|....+..+++.++++ |+++.+|.......+.. ..++.
T Consensus       233 ~a-~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~  311 (378)
T PLN02827        233 KA-KTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFL  311 (378)
T ss_pred             HH-HHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHh
Confidence            55 78999999987642     23444444 7999999999876789999999998 99999998654444433 35778


Q ss_pred             CCeEEEEEecCC---HHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          153 GRKIVGGSLIGG---LKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       153 ~~~~~~~~~~~~---~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      +++++.|++...   ..+++.+++++++|++++  .+ ++|+|+++++|++.+++++. +|+||.+.
T Consensus       312 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~vi~~~  377 (378)
T PLN02827        312 SGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-LRCVIHMP  377 (378)
T ss_pred             cCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEEEEec
Confidence            999999987643   357889999999999998  45 89999999999999998876 79999874

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.97  E-value=6.3e-29  Score=198.25  Aligned_cols=210  Identities=19%  Similarity=0.183  Sum_probs=171.2

Q ss_pred             cccc-cceEeCC-CCCCcc-ccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664            2 VADE-HFVVRIP-EGAPLD-ATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~v~~-~~~~~ip-~~~s~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ++|+ ..++++| ++++++ +++++++++.|||+++....++++|++|||+|+ |++|++++|+|+.+|++|++++++++
T Consensus       108 ~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~  187 (338)
T cd08295         108 LIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDE  187 (338)
T ss_pred             EecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            5677 7899995 678887 799999999999999987777899999999997 99999999999999999999998887


Q ss_pred             chHHHHHHcCCCEEEcCCCH----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-C-----CCC
Q 027664           78 KKSEAVERLGADSFLVSRDQ----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-L-----ELP  146 (220)
Q Consensus        78 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~-----~~~  146 (220)
                      +.+.+.+.+|+++++++.+.    +.+++..+ ++|++||++|+. .+..++++++++|+++.+|..... .     ..+
T Consensus       188 ~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  266 (338)
T cd08295         188 KVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGK-MLDAVLLNMNLHGRIAACGMISQYNLEWPEGVRN  266 (338)
T ss_pred             HHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCHH-HHHHHHHHhccCcEEEEecccccCCCCCCCCccC
Confidence            77666444999999986542    23444443 899999999985 689999999999999999865432 1     123


Q ss_pred             chhhhcCCeEEEEEecCCH-----HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          147 AFPLLTGRKIVGGSLIGGL-----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ...++.+++++.++.....     +.++++++++.+|++++.+ ..|+++++++|++.+++++..||+|+++
T Consensus       267 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         267 LLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDIADGLESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             HHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEceeecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence            3456777888888655432     3467889999999999876 6899999999999999998889999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.97  E-value=1.1e-28  Score=198.90  Aligned_cols=208  Identities=23%  Similarity=0.354  Sum_probs=169.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++++++++++.|||+++.....+++|++|||+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       145 ~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~  224 (368)
T TIGR02818       145 VVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFE  224 (368)
T ss_pred             EechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            567889999999999999999999999999998766668999999999999999999999999999 7999988887766


Q ss_pred             HHHHHcCCCEEEcCCC--H---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCC--CCCCCchhhh
Q 027664           81 EAVERLGADSFLVSRD--Q---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~--~---~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|++.++++.+  .   +.+.++++ ++|++|||+|.+..+..++++++++ |+++.+|....  ...+....++
T Consensus       225 ~a-~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~  303 (368)
T TIGR02818       225 LA-KKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLV  303 (368)
T ss_pred             HH-HHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHh
Confidence            66 7899999998764  2   23445544 8999999999876788999999886 99999997643  2344444444


Q ss_pred             cCCeEEEEEecC---CHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          152 TGRKIVGGSLIG---GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~~~~~~~~---~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      . +..+.++...   ...++.++++++.+|++++.  + ++|+|+++++|++.+++++. .|+++.+
T Consensus       304 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~v~~  368 (368)
T TIGR02818       304 T-GRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTVIHY  368 (368)
T ss_pred             c-cceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEEeeC
Confidence            3 3456676543   34678999999999998753  4 89999999999999987764 7998864

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PLN02740 Alcohol dehydrogenase-like

Probab=99.97  E-value=1e-28  Score=199.84  Aligned_cols=207  Identities=24%  Similarity=0.357  Sum_probs=171.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++++.+++.+.|||+++.....+++|++|||+|+|++|++++|+|+.+|+ +|++++.++++++
T Consensus       158 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~  237 (381)
T PLN02740        158 VLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFE  237 (381)
T ss_pred             EEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHH
Confidence            567889999999999999999999999999987666668999999999999999999999999999 6999988887776


Q ss_pred             HHHHHcCCCEEEcCCCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCCC--CCCCchhhh
Q 027664           81 EAVERLGADSFLVSRDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~-----~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +++|++.++++.+.     +.+++.++ ++|++|||+|.+..+..++.+++++ |+++.+|.....  ..++...+ 
T Consensus       238 ~a-~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~-  315 (381)
T PLN02740        238 KG-KEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMEL-  315 (381)
T ss_pred             HH-HHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHH-
Confidence            66 78999999987652     23445544 7999999999876789999999996 999999986543  23333333 


Q ss_pred             cCCeEEEEEecCC---HHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          152 TGRKIVGGSLIGG---LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~~~~~~~~~---~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .+++++.|++.+.   ..+++++++++.+|.+++.  + ++|+|+++++|++.+.+++. .|++|+
T Consensus       316 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~~~  380 (381)
T PLN02740        316 FDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCLLH  380 (381)
T ss_pred             hcCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEEEe
Confidence            3678898887643   3578999999999998763  5 89999999999999988765 699886

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=5.4e-29  Score=186.83  Aligned_cols=207  Identities=26%  Similarity=0.386  Sum_probs=181.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      +++...+.+|+++.+++.++.+.|...|+|.|.-+...+++|+++.|+|-|++|+++++-||+.|+ ++|.++-++++.+
T Consensus       152 Vv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~  231 (375)
T KOG0022|consen  152 VVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFE  231 (375)
T ss_pred             EeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHH
Confidence            678899999999999999999999999999998888889999999999999999999999999999 9999999998887


Q ss_pred             HHHHHcCCCEEEcCCCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCCC--CCCCchhhh
Q 027664           81 EAVERLGADSFLVSRDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~-----~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +.+|+++++|+.+.     +.+.++++ |+|+.|||+|+.+.+++++.+.++| |+-+.+|.....  +++.++.++
T Consensus       232 ~a-k~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~  310 (375)
T KOG0022|consen  232 KA-KEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLV  310 (375)
T ss_pred             HH-HhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhc
Confidence            76 78999999999852     45667776 8999999999999999999999888 999999987653  666777755


Q ss_pred             cCCeEEEEEecCC---HHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          152 TGRKIVGGSLIGG---LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~~~~~~~~~---~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      . +.++.|+.++.   .++++.+++.+.+++++..  + |++||++|++||+.|.+++.. |-|+.
T Consensus       311 ~-GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi-R~vl~  374 (375)
T KOG0022|consen  311 T-GRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSI-RCVLW  374 (375)
T ss_pred             c-ccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceE-EEEEe
Confidence            5 66788877665   4788999999999988865  5 999999999999999999875 66654

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.97  E-value=1.6e-28  Score=196.54  Aligned_cols=208  Identities=21%  Similarity=0.262  Sum_probs=168.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      .+|++.++++|+++++++|+.+. ...++++++... .+++|++|+|+|+|++|++++|+|+++|++ |+++++++++++
T Consensus       122 ~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~~~~-~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~  199 (347)
T PRK10309        122 VVKRKNLFALPTDMPIEDGAFIE-PITVGLHAFHLA-QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLA  199 (347)
T ss_pred             EeehHHeEECcCCCCHHHhhhhh-HHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            46788999999999999998763 345577776544 478999999999999999999999999996 677888877766


Q ss_pred             HHHHHcCCCEEEcCCCH--HHHHHhcC--Ccc-EEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCc---hhhhc
Q 027664           81 EAVERLGADSFLVSRDQ--DEMQAAMG--TMD-GIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA---FPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~--~~~~~~~~--~~d-~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~---~~~~~  152 (220)
                      .+ +++|++.++++.+.  +.+.+.+.  ++| ++|||+|....+..++++++++|+++.+|...+..+++.   ..++.
T Consensus       200 ~~-~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~  278 (347)
T PRK10309        200 LA-KSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFGKILR  278 (347)
T ss_pred             HH-HHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCcccChhhhhHHhh
Confidence            55 78999999887653  33444443  688 999999987678999999999999999997665433332   35678


Q ss_pred             CCeEEEEEecCC-----HHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          153 GRKIVGGSLIGG-----LKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       153 ~~~~~~~~~~~~-----~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +++++.|++.+.     ..+++.+++++++|.+++  .+ ++|+|+++++|++.+.++...||+|+++
T Consensus       279 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  346 (347)
T PRK10309        279 KELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI  346 (347)
T ss_pred             cCcEEEEEeccccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence            899999987542     367889999999999864  35 8999999999999999888789999976

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.97  E-value=1.1e-28  Score=195.77  Aligned_cols=207  Identities=21%  Similarity=0.250  Sum_probs=168.9

Q ss_pred             ccccceEeC----CCCCCcccc-ccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc
Q 027664            3 ADEHFVVRI----PEGAPLDAT-APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus         3 v~~~~~~~i----p~~~s~~~a-a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      ++.+.+.++    |+++++++| +++++.+.|||+++.....+++|++|||+|+ |++|++++|+|+..|++|+++++++
T Consensus        94 ~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~  173 (325)
T TIGR02825        94 SDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD  173 (325)
T ss_pred             echhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            456666666    999999987 6899999999999877777899999999996 9999999999999999999999888


Q ss_pred             cchHHHHHHcCCCEEEcCCCHH----HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-----CCC--
Q 027664           77 SKKSEAVERLGADSFLVSRDQD----EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-----PLE--  144 (220)
Q Consensus        77 ~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~--  144 (220)
                      ++.+.+ +++|++.++++.+.+    .++...+ ++|++|||+|+. .+..++++++++|+++.+|....     ...  
T Consensus       174 ~~~~~~-~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~  251 (325)
T TIGR02825       174 EKVAYL-KKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGE-FSNTVIGQMKKFGRIAICGAISTYNRTGPLPPG  251 (325)
T ss_pred             HHHHHH-HHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCHH-HHHHHHHHhCcCcEEEEecchhhcccCCCCCCC
Confidence            776666 789999999877532    2333443 799999999987 57999999999999999986532     111  


Q ss_pred             CCchhhhcCCeEEEEEecCC------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          145 LPAFPLLTGRKIVGGSLIGG------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .....+..+++++.++....      .+.++++++++++|++++.+ ..|+++++++|++.+++++..||+|++
T Consensus       252 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       252 PPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKEYVIEGFENMPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             cchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccceeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence            12334566788888876432      24678899999999999876 789999999999999999888999873

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=2.9e-28  Score=194.06  Aligned_cols=207  Identities=34%  Similarity=0.608  Sum_probs=180.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      .++...++++|+++++++++++++.+.|+|+++... .++++++|+|+|+|++|++++++|+++|++|+++++++++++.
T Consensus       124 ~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~-~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~  202 (333)
T cd08296         124 LAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNS-GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADL  202 (333)
T ss_pred             EEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHHhc-CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence            467788999999999999999999999999999777 6899999999999999999999999999999999998877666


Q ss_pred             HHHHcCCCEEEcCCCHHH---HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEE
Q 027664           82 AVERLGADSFLVSRDQDE---MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVG  158 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~~---~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  158 (220)
                      + +++|+++++++.+.+.   +.+. +++|+++|++|....+..++++++++|+++.+|......+++...++.+++++.
T Consensus       203 ~-~~~g~~~~i~~~~~~~~~~~~~~-~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~  280 (333)
T cd08296         203 A-RKLGAHHYIDTSKEDVAEALQEL-GGAKLILATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIH  280 (333)
T ss_pred             H-HHcCCcEEecCCCccHHHHHHhc-CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEE
Confidence            6 7899999998776433   2333 479999999976657889999999999999999876556677777789999999


Q ss_pred             EEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          159 GSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      +...+...++..++++++++.+.+.++.|+++++.+||+.+++++.+||+|++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         281 GWPSGTALDSEDTLKFSALHGVRPMVETFPLEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             EeCcCCHHHHHHHHHHHHhCCCCceEEEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence            99877778899999999999888767889999999999999999989999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.96  E-value=4.4e-28  Score=195.42  Aligned_cols=207  Identities=24%  Similarity=0.383  Sum_probs=168.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      +++++.++++|+++++++++++++.+.|+|+++.....+++|++|||+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       146 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~  225 (368)
T cd08300         146 VVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFE  225 (368)
T ss_pred             EEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            467889999999999999999999999999988666668999999999999999999999999999 7999999988776


Q ss_pred             HHHHHcCCCEEEcCCCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCC--CCCCCchhhh
Q 027664           81 EAVERLGADSFLVSRDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~-----~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|+++++++.+.     +.+.++++ ++|++|||+|....+..++++++++ |+++.+|...+  ....+...+.
T Consensus       226 ~~-~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~  304 (368)
T cd08300         226 LA-KKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV  304 (368)
T ss_pred             HH-HHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh
Confidence            55 78999999987653     22444444 7999999999866789999999886 99999997642  2333443333


Q ss_pred             cCCeEEEEEecC---CHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          152 TGRKIVGGSLIG---GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~~~~~~~~---~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                       +...+.++...   ...+++++++++.+|++++.  + ++|+|+++++||+.+.+++. .|++++
T Consensus       305 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~~~  368 (368)
T cd08300         305 -TGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTVVK  368 (368)
T ss_pred             -hcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence             33455565432   35678899999999999864  4 89999999999999987764 688874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.96  E-value=5e-28  Score=194.86  Aligned_cols=207  Identities=25%  Similarity=0.407  Sum_probs=170.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++++++++.|||+++.....+++|++|+|+|+|++|++++|+|+++|+ +|+++++++++++
T Consensus       144 ~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~  223 (365)
T cd08277         144 VVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFE  223 (365)
T ss_pred             EEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            467789999999999999999999999999987666668999999999999999999999999999 7988888887766


Q ss_pred             HHHHHcCCCEEEcCCCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCC-CCCCCchhhhc
Q 027664           81 EAVERLGADSFLVSRDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK-PLELPAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~-----~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~  152 (220)
                      .+ +.+|++++++..+.     +.+++.++ ++|++|||+|....+..++++++++ |+++.+|...+ ..+++...++.
T Consensus       224 ~~-~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~  302 (365)
T cd08277         224 KA-KEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL  302 (365)
T ss_pred             HH-HHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh
Confidence            55 78999999887642     23444443 7999999999766788999999885 99999998653 34555555554


Q ss_pred             CCeEEEEEecCC---HHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          153 GRKIVGGSLIGG---LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       153 ~~~~~~~~~~~~---~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                       ++++.|++.+.   ..++++++++++++.++..  + ++|+|+++++|++.+++++ ..|++++
T Consensus       303 -~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~k~~i~  365 (365)
T cd08277         303 -GRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGE-CIRTVIT  365 (365)
T ss_pred             -CCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCC-CceEeeC
Confidence             78888887653   4578999999999987743  4 7999999999999998877 4688763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.96  E-value=1.1e-27  Score=193.24  Aligned_cols=206  Identities=24%  Similarity=0.412  Sum_probs=170.7

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++++..++++|+++++++++++++.+.|+|+++.....+++|++|+|+|+|++|++++|+|+.+|+ +|+++++++++++
T Consensus       147 ~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~  226 (369)
T cd08301         147 VVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFE  226 (369)
T ss_pred             EEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            467889999999999999999999999999987766678999999999999999999999999999 8999998888776


Q ss_pred             HHHHHcCCCEEEcCCCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCCC--CCCCchhhh
Q 027664           81 EAVERLGADSFLVSRDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~-----~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +++|++.++++.+.     +.+++.++ ++|++|||+|....+..++.+++++ |+++.+|....+  .+++...++
T Consensus       227 ~~-~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~  305 (369)
T cd08301         227 QA-KKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLL  305 (369)
T ss_pred             HH-HHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHh
Confidence            66 78999999887642     22444444 7999999999876788899999996 999999987543  344444444


Q ss_pred             cCCeEEEEEecCC---HHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          152 TGRKIVGGSLIGG---LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       152 ~~~~~~~~~~~~~---~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                       +++++.|++...   ..+++++++++.+|.++..  + ++|+|+++++||+.+++++. .|+++
T Consensus       306 -~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~k~~~  368 (369)
T cd08301         306 -NGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGEC-LRCIL  368 (369)
T ss_pred             -cCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCc-eeEEe
Confidence             688999987643   3578899999999988754  4 89999999999999998886 58876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.96  E-value=4.3e-28  Score=193.47  Aligned_cols=204  Identities=16%  Similarity=0.205  Sum_probs=157.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhc--CCCCCCEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCcc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYG--LDKPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPS   77 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~--~~~~~~~vlI~G~g~~G~~~~~la~~-~g~-~vi~~~~~~~   77 (220)
                      ++|+++++++|+++|+++|| +.....++|+++....  .+++|++|+|.|+|++|++++|++++ .|+ +|++++.+++
T Consensus       122 ~v~~~~~~~vP~~l~~~~aa-~~~~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~  200 (341)
T cd08237         122 FLPPDRLVKLPDNVDPEVAA-FTELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQE  200 (341)
T ss_pred             EEchHHeEECCCCCChHHhh-hhchHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHh
Confidence            57889999999999998877 4457788898886432  35789999999999999999999986 665 8999998887


Q ss_pred             chHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCC---cccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCC
Q 027664           78 KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA---VHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGR  154 (220)
Q Consensus        78 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  154 (220)
                      |++.+ +..+.+..++    + ..+ ..++|++|||+|+   +..++.++++++++|+++.+|....+.+++...++.++
T Consensus       201 k~~~a-~~~~~~~~~~----~-~~~-~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~  273 (341)
T cd08237         201 KLDLF-SFADETYLID----D-IPE-DLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKG  273 (341)
T ss_pred             HHHHH-hhcCceeehh----h-hhh-ccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhhCc
Confidence            77665 4566543322    1 111 1279999999994   34688999999999999999976555667777788999


Q ss_pred             eEEEEEecCCHHHHHHHHHHHHcC-----CCccce-EEeecccHHHHHHHHHcCC--CceeEEEEeC
Q 027664          155 KIVGGSLIGGLKETQEMIDFAAKH-----NIRADI-EVIPADYVNTAMERLAKAD--VRYRFVIDVA  213 (220)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~g-----~i~~~~-~~~~~~~~~~a~~~~~~~~--~~gk~vv~~~  213 (220)
                      +++.|+......+++++++++++|     .+.+.+ ++|+++++.++.+.++...  ..||+|++++
T Consensus       274 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~gKvvi~~~  340 (341)
T cd08237         274 LTLVGSSRSTREDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWGKTVMEWE  340 (341)
T ss_pred             eEEEEecccCHHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcceEEEEee
Confidence            999999877778899999999998     355556 7899865555444444332  5699999874

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.96  E-value=1.1e-27  Score=192.04  Aligned_cols=207  Identities=26%  Similarity=0.367  Sum_probs=174.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++.+ ..+.|||+++. ...+++|++|+|+|+|++|++++|+|+..|+ +|++++.++++.+
T Consensus       134 ~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~-~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~  211 (351)
T cd08233         134 VVPAYHVHKLPDNVPLEEAALV-EPLAVAWHAVR-RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRE  211 (351)
T ss_pred             EechHHeEECcCCCCHHHhhhc-cHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            4677899999999999998765 67789999994 4557999999999999999999999999999 8888888887766


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCe
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRK  155 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      .+ +++|++.++++.+.+   .+.+.++  ++|++|||+|....+..++++++++|+++.+|......+++...++.+++
T Consensus       212 ~~-~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  290 (351)
T cd08233         212 LA-EELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEK  290 (351)
T ss_pred             HH-HHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCc
Confidence            55 679999999887643   3444443  59999999997657889999999999999999876556777778888999


Q ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccH-HHHHHHHHcCCCc-eeEEEE
Q 027664          156 IVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYV-NTAMERLAKADVR-YRFVID  211 (220)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~-~~a~~~~~~~~~~-gk~vv~  211 (220)
                      ++.+.+.+..++++++++++++|++++.  + ++|+++++ ++|++.+.+++.. +|+|+.
T Consensus       291 ~i~g~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~  351 (351)
T cd08233         291 TLTGSICYTREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS  351 (351)
T ss_pred             EEEEEeccCcchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9999987777889999999999999753  4 79999996 7999999888864 999873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=2.8e-27  Score=188.68  Aligned_cols=208  Identities=63%  Similarity=1.009  Sum_probs=181.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      .++.+.++++|+++++++++.+++.+.+||+++.... +++|++++|.|+|++|++++++++..|++++++++++++.+.
T Consensus       130 ~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~-~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~  208 (337)
T cd05283         130 VVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNG-VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKED  208 (337)
T ss_pred             EechhheEECCCCCCHHHhhhhhhHHHHHHHHHHhcC-CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence            4677899999999999999999999999999998876 799999999888999999999999999999999988877766


Q ss_pred             HHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEe
Q 027664           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSL  161 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  161 (220)
                      + +.+|++.+++..+.+..+...+++|++|||+|.......++++++++|+++.+|.......++...++.++.++.++.
T Consensus       209 ~-~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~  287 (337)
T cd05283         209 A-LKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSL  287 (337)
T ss_pred             H-HHcCCcEEecCcchhhhhhccCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEec
Confidence            6 679999988877655444444589999999998755889999999999999998765544566777788999999998


Q ss_pred             cCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          162 IGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       162 ~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      ....++++.+++++++|++++.++.|+++++++||+.+.+++..||+|++
T Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         288 IGGRKETQEMLDFAAEHGIKPWVEVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             ccCHHHHHHHHHHHHhCCCccceEEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence            88889999999999999998767889999999999999999988998874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.96  E-value=1.7e-27  Score=189.27  Aligned_cols=209  Identities=18%  Similarity=0.214  Sum_probs=168.5

Q ss_pred             ccccc---ceEeCCCCCC--c---cccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEE
Q 027664            2 VADEH---FVVRIPEGAP--L---DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI   72 (220)
Q Consensus         2 ~v~~~---~~~~ip~~~s--~---~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~   72 (220)
                      +++..   .++++|++++  +   ..++++++.++|||+++.....+++|++|||+|+ |++|++++|+|+..|++|+++
T Consensus        95 ~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~  174 (329)
T cd08294          95 VSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGC  174 (329)
T ss_pred             EECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEE
Confidence            45677   9999999998  2   2234688999999999977777899999999996 999999999999999999999


Q ss_pred             eCCccchHHHHHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CC---
Q 027664           73 STSPSKKSEAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PL---  143 (220)
Q Consensus        73 ~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~---  143 (220)
                      ++++++.+.+ +++|+++++++.+.+   .+++.++ ++|++||++|+. .+..++++++++|+++.+|....  ..   
T Consensus       175 ~~s~~~~~~l-~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~  252 (329)
T cd08294         175 AGSDDKVAWL-KELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGGE-FSSTVLSHMNDFGRVAVCGSISTYNDKEPK  252 (329)
T ss_pred             eCCHHHHHHH-HHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCHH-HHHHHHHhhccCCEEEEEcchhccCCCCCC
Confidence            9888777666 679999999987643   3444443 799999999985 68999999999999999985422  11   


Q ss_pred             --CCCchhhhcCCeEEEEEecCCH-----HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          144 --ELPAFPLLTGRKIVGGSLIGGL-----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       144 --~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                        ......+..+++++.++....+     +.++++++++++|++++.+ .+|+++++++|++.+++++..||+|+++
T Consensus       253 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         253 KGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYREHVTEGFENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             cCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCCcccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence              2223356778888888765432     3367788999999998766 6899999999999999998889999863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.96  E-value=3e-27  Score=188.54  Aligned_cols=210  Identities=26%  Similarity=0.349  Sum_probs=169.0

Q ss_pred             cccccceEe-CCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccch
Q 027664            2 VADEHFVVR-IPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKK   79 (220)
Q Consensus         2 ~v~~~~~~~-ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~   79 (220)
                      .+|.+++++ +|+++ ..+++++...+.+++++.......+++.+|+|+|+|++|++++++++..|+ +|++++.+++|+
T Consensus       128 ~vp~~~~~~~~pd~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl  206 (350)
T COG1063         128 RVPADFNLAKLPDGI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL  206 (350)
T ss_pred             EeccccCeecCCCCC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence            456555555 48888 566667888889997774444334666699999999999999999999999 888888888887


Q ss_pred             HHHHHHcCCCEEEcCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCC-CCCchhhhcC
Q 027664           80 SEAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTG  153 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~  153 (220)
                      +.+++..+++.+++..++   ..+.+.++  ++|++|||+|....+..+++.++++|+++.+|...... .++...++.+
T Consensus       207 ~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~k  286 (350)
T COG1063         207 ELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSK  286 (350)
T ss_pred             HHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhc
Confidence            777544777877776553   23445554  69999999998878999999999999999999987665 6778889999


Q ss_pred             CeEEEEEec-CCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCC-ceeEEEEe
Q 027664          154 RKIVGGSLI-GGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADV-RYRFVIDV  212 (220)
Q Consensus       154 ~~~~~~~~~-~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~-~gk~vv~~  212 (220)
                      ++++.|+.. ....+++.+++++++|++++.  + +.++++++++|++.+.+... ..|+++.+
T Consensus       287 el~l~gs~~~~~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         287 ELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             ccEEEeccCCCCcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            999999965 555789999999999999976  3 78999999999999988654 46888764

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.96  E-value=1.2e-27  Score=188.41  Aligned_cols=197  Identities=18%  Similarity=0.172  Sum_probs=156.7

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      ++|++.++++|++++++. +.++ .+.|||+++.+..  .++++++|+|+|++|++++|+|+++|++ |++++.++++++
T Consensus       108 ~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~~~--~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~  183 (308)
T TIGR01202       108 VTPASRVCRLDPALGPQG-ALLA-LAATARHAVAGAE--VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRD  183 (308)
T ss_pred             EcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHhcc--cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence            578899999999999764 4444 4689999987642  4688999999999999999999999996 445555544433


Q ss_pred             HHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEE
Q 027664           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGS  160 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  160 (220)
                      .+    +...++|+.+.     ..+++|++|||+|++..++.++++++++|+++.+|......+++...++.+++++.++
T Consensus       184 ~a----~~~~~i~~~~~-----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~  254 (308)
T TIGR01202       184 GA----TGYEVLDPEKD-----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIA  254 (308)
T ss_pred             hh----hhccccChhhc-----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCcccccchhhhcceEEEEe
Confidence            32    22344554321     2247999999999976789999999999999999987655667777778889999998


Q ss_pred             ecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          161 LIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       161 ~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .....++++.+++++++|++++.  + ++|+|+++++|++.+.++...+|++++
T Consensus       255 ~~~~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       255 AEWQPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             cccchhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence            87777889999999999999874  4 899999999999988776667899874

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.96  E-value=3.2e-27  Score=187.39  Aligned_cols=205  Identities=17%  Similarity=0.220  Sum_probs=166.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEE-c-cchhHHHHHHHHHHCCCeEEEEeCCccch
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV-G-LGGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~-G-~g~~G~~~~~la~~~g~~vi~~~~~~~~~   79 (220)
                      ++|++.++++|+++++++++++++.+.|||.++... .+ +++.++|+ | +|++|++++|+|+.+|++|++++.+++++
T Consensus       104 ~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~-~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~  181 (324)
T cd08291         104 VADAQQCLPLPDGVSFEQGASSFVNPLTALGMLETA-RE-EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQV  181 (324)
T ss_pred             eecHHHeEECCCCCCHHHHhhhcccHHHHHHHHHhh-cc-CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            578889999999999999999999999998655433 33 55566665 4 59999999999999999999999888777


Q ss_pred             HHHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-C-CCCchhhhc
Q 027664           80 SEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-L-ELPAFPLLT  152 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~-~~~~~~~~~  152 (220)
                      +.+ +++|+++++++.+.+   .+++.++  ++|++|||+|+. .....+++++++|+++.+|..... . .++...++.
T Consensus       182 ~~~-~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  259 (324)
T cd08291         182 DLL-KKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGG-LTGQILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIF  259 (324)
T ss_pred             HHH-HHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCcH-HHHHHHHhhCCCCEEEEEEecCCCCcccCCHHHHhh
Confidence            666 679999999877643   3444443  799999999987 467789999999999999875432 2 355666788


Q ss_pred             CCeEEEEEecCC------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          153 GRKIVGGSLIGG------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       153 ~~~~~~~~~~~~------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      +++++.+++...      .++++.++++++ +.+++.+ ++|+|+++++|++.+.+++..||+++.
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~  324 (324)
T cd08291         260 KNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TELKTTFASRYPLALTLEAIAFYSKNMSTGKKLLI  324 (324)
T ss_pred             cCcEEEEEEHHHhhcccCHHHHHHHHHHHh-CccccceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence            999998887543      346778888888 8898887 899999999999999998888999873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.95  E-value=7.3e-27  Score=187.94  Aligned_cols=209  Identities=25%  Similarity=0.303  Sum_probs=172.6

Q ss_pred             ccccc-ceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccch
Q 027664            2 VADEH-FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKK   79 (220)
Q Consensus         2 ~v~~~-~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~   79 (220)
                      .++++ .++++|+++++++++++++.+.|||+++.....+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++.
T Consensus       136 ~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~  215 (361)
T cd08231         136 YLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERL  215 (361)
T ss_pred             EecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence            35564 7999999999999999989999999999888866799999999999999999999999999 999998887766


Q ss_pred             HHHHHHcCCCEEEcCCCH------HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchh
Q 027664           80 SEAVERLGADSFLVSRDQ------DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFP  149 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~------~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~  149 (220)
                      ..+ +++|++.++++.+.      ..+.+.++  ++|++|||+|+...+..++++++++|+++.+|....  ..++++..
T Consensus       216 ~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  294 (361)
T cd08231         216 ELA-REFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPER  294 (361)
T ss_pred             HHH-HHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHH
Confidence            555 78999988877642      13445543  799999999876568899999999999999997643  23455556


Q ss_pred             hhcCCeEEEEEecCCHHHHHHHHHHHHcC--CCc--cce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          150 LLTGRKIVGGSLIGGLKETQEMIDFAAKH--NIR--ADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~g--~i~--~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++.+++++.+++..+.++++++++++.++  .+.  +.+ ++|+++++++|++.+++++ .+|+|+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~~k~vi~~  361 (361)
T cd08231         295 IVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGT-ALKVVIDP  361 (361)
T ss_pred             HhhcccEEEEcccCCchhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCC-ceEEEeCC
Confidence            68899999999887778899999999887  443  334 7899999999999998877 48999863

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.95  E-value=5.1e-27  Score=188.44  Aligned_cols=205  Identities=21%  Similarity=0.290  Sum_probs=157.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhh------cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeC-
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY------GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST-   74 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~------~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~-   74 (220)
                      +++++.++++|++++ +. +++.....+++.++...      ..+++|++|+|+|+|++|++++|+|++.|++|+++++ 
T Consensus       128 ~~~~~~~~~~P~~~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~  205 (355)
T cd08230         128 VDDPEYLVKVPPSLA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR  205 (355)
T ss_pred             EeccccEEECCCCCC-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            578899999999999 44 44555555555444322      1246899999999999999999999999999999887 


Q ss_pred             --CccchHHHHHHcCCCEEEcCCCHHHH-HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCC---
Q 027664           75 --SPSKKSEAVERLGADSFLVSRDQDEM-QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELP---  146 (220)
Q Consensus        75 --~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~---  146 (220)
                        ++++++ +++++|++. +++.+.+.. ....+++|++|||+|.+..+..++++++++|+++.+|...+  ..+++   
T Consensus       206 ~~~~~~~~-~~~~~Ga~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~  283 (355)
T cd08230         206 DPPDPKAD-IVEELGATY-VNSSKTPVAEVKLVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGE  283 (355)
T ss_pred             CCCHHHHH-HHHHcCCEE-ecCCccchhhhhhcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhh
Confidence              444544 557899987 455443211 12234899999999987678999999999999999998665  23444   


Q ss_pred             -chhhhcCCeEEEEEecCCHHHHHHHHHHHHcCC------Cccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          147 -AFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHN------IRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~------i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                       ...++.+++++.|++..+.++++++++++.++.      +.+.+ ++|+++++++||+.++++.  +|+++++
T Consensus       284 ~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~K~v~~~  355 (355)
T cd08230         284 LNRDLVLGNKALVGSVNANKRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--IKVVIEW  355 (355)
T ss_pred             hhhhHhhcCcEEEEecCCchhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC--eEEEeeC
Confidence             345788999999998877788999999998876      44445 8999999999999886544  6999864

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.95  E-value=1.3e-26  Score=185.07  Aligned_cols=209  Identities=32%  Similarity=0.456  Sum_probs=176.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhh-cCCCCCCEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccch
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKK   79 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~   79 (220)
                      .++++.++++|+++++++++++++.+.|||+++... ..+.++++|||+|+|++|++++++|+..| .+|++++.++++.
T Consensus       126 ~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~  205 (340)
T cd05284         126 LVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEAL  205 (340)
T ss_pred             EecHHHeEECCCCCCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHH
Confidence            467789999999999999999999999999999876 45788999999999779999999999999 7999998888777


Q ss_pred             HHHHHHcCCCEEEcCCCH--HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCe
Q 027664           80 SEAVERLGADSFLVSRDQ--DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRK  155 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~--~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      +.+ +++|+++++++.+.  +.+++..+  ++|+++||+|+....+.++++++++|+++.+|.... ..++....+.++.
T Consensus       206 ~~~-~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-~~~~~~~~~~~~~  283 (340)
T cd05284         206 KLA-ERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEI  283 (340)
T ss_pred             HHH-HHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-CccCHHHhhhcce
Confidence            666 78999999887764  33444443  699999999975578899999999999999986553 3444444467889


Q ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          156 IVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++.+........++.+++++++|.+.+.++.|+++++++|++.+.+++..||+++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~~~  340 (340)
T cd05284         284 SVIGSLWGTRAELVEVVALAESGKVKVEITKFPLEDANEALDRLREGRVTGRAVLVP  340 (340)
T ss_pred             EEEEEecccHHHHHHHHHHHHhCCCCcceEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence            998887767788899999999999987668899999999999999988889998753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.95  E-value=2.5e-27  Score=184.26  Aligned_cols=189  Identities=23%  Similarity=0.271  Sum_probs=157.1

Q ss_pred             ccccc-ceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccch
Q 027664            2 VADEH-FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKK   79 (220)
Q Consensus         2 ~v~~~-~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~   79 (220)
                      ++|++ .++++|+++++++++++++.+.|+|++++... ..+|++|+|+|+|++|++++|+|+++|++ |++++.+++++
T Consensus        80 ~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~-~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~  158 (280)
T TIGR03366        80 HLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAG-DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR  158 (280)
T ss_pred             EecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhcc-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence            46776 69999999999999999999999999998776 46999999999999999999999999995 88887676655


Q ss_pred             HHHHHHcCCCEEEcCCCH-HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC--CCCCCCchhhhcCC
Q 027664           80 SEAVERLGADSFLVSRDQ-DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE--KPLELPAFPLLTGR  154 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~-~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~  154 (220)
                       ++++++|++.++++.+. +.+.+.++  ++|++|||+|.+..++.++++++++|+++.+|...  .+.++++..++.++
T Consensus       159 -~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~  237 (280)
T TIGR03366       159 -ELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRW  237 (280)
T ss_pred             -HHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCC
Confidence             45578999998886553 33444443  79999999998777899999999999999999753  24577788889999


Q ss_pred             eEEEEEecCCHHHHHHHHHHHHcC--CCcc--ce-EEeecccH
Q 027664          155 KIVGGSLIGGLKETQEMIDFAAKH--NIRA--DI-EVIPADYV  192 (220)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~g--~i~~--~~-~~~~~~~~  192 (220)
                      +++.|++.++.++++++++++.++  +++.  .+ ++|+++++
T Consensus       238 ~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       238 LTIRGVHNYEPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             cEEEecCCCCHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            999999988888999999999985  4443  24 78998863

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.95  E-value=3.1e-26  Score=183.20  Aligned_cols=210  Identities=15%  Similarity=0.176  Sum_probs=161.5

Q ss_pred             cccccceEeCCCCCCccc----cccccchhhhhhhHHHhhcCCCCC--CEEEEEcc-chhHHHHHHHHHHCCC-eEEEEe
Q 027664            2 VADEHFVVRIPEGAPLDA----TAPLLCAGITVYSPLRFYGLDKPG--MHVGVVGL-GGLGHVAVKFAKAMGV-KVTVIS   73 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~----aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~G~-g~~G~~~~~la~~~g~-~vi~~~   73 (220)
                      +++++.++++|+++++++    +++++.++.|||+++.....+++|  ++|||+|+ |++|++++|+|+++|+ +|++++
T Consensus       108 ~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~  187 (345)
T cd08293         108 VLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGIC  187 (345)
T ss_pred             EecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEc
Confidence            578899999999865443    456788899999999777667776  99999997 9999999999999999 899999


Q ss_pred             CCccchHHHHHHcCCCEEEcCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC---CCC--
Q 027664           74 TSPSKKSEAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK---PLE--  144 (220)
Q Consensus        74 ~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~~--  144 (220)
                      .++++.+.+.+.+|++.++++.+.   +.+++.++ ++|++|||+|+. .+..++++++++|+++.+|....   ...  
T Consensus       188 ~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~  266 (345)
T cd08293         188 GSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGGE-ISDTVISQMNENSHIILCGQISQYNKDVPYP  266 (345)
T ss_pred             CCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCcH-HHHHHHHHhccCCEEEEEeeeecccCccCcc
Confidence            998887777556999999988764   33445444 899999999987 57899999999999999985321   111  


Q ss_pred             --CCc--hhh-hcCCeEEEEEecCC-----HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          145 --LPA--FPL-LTGRKIVGGSLIGG-----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       145 --~~~--~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                        +..  ..+ ..+++++.+.....     .+.++.+++++++|.+++.+ ..++++++++|++.+.+++..||+|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         267 PPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             ccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCccceeEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence              111  111 22344443332211     23467788899999998776 5679999999999999988889999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.95  E-value=2.9e-26  Score=171.67  Aligned_cols=211  Identities=23%  Similarity=0.218  Sum_probs=173.3

Q ss_pred             ccccceEeCCCCCCc--cccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccch
Q 027664            3 ADEHFVVRIPEGAPL--DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         3 v~~~~~~~ip~~~s~--~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~   79 (220)
                      ++.+.+.|++++.-+  .....+..++.|||.+|.+++..++|++|+|-|| |++|..+.|+||..|++|+.++..++|.
T Consensus       109 ~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~  188 (340)
T COG2130         109 SDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKC  188 (340)
T ss_pred             echhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHH
Confidence            455667777654321  2223688899999999999999999999999987 9999999999999999999999999998


Q ss_pred             HHHHHHcCCCEEEcCCCHHHHH---Hhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC---C-CC---CCch
Q 027664           80 SEAVERLGADSFLVSRDQDEMQ---AAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK---P-LE---LPAF  148 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~~~~~---~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~-~~---~~~~  148 (220)
                      ..+...+|.|.++|+..++.-+   +.. +|+|+.||++|++ .++..+..|+..+|++.+|..+.   + ..   -...
T Consensus       189 ~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVGg~-v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~  267 (340)
T COG2130         189 DFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGGE-VLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLP  267 (340)
T ss_pred             HHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCCch-HHHHHHHhhccccceeeeeehhhcCCCCCCCCcchhh
Confidence            8887779999999999875433   332 4999999999998 79999999999999999998753   1 11   1223


Q ss_pred             hhhcCCeEEEEEecCC------HHHHHHHHHHHHcCCCccceE-EeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          149 PLLTGRKIVGGSLIGG------LKETQEMIDFAAKHNIRADIE-VIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       149 ~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~g~i~~~~~-~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      .++.+.+++.|+....      .+..+++..++.+|+|+.... .-.||++++||.-+.+++.+||.|+++.+
T Consensus       268 ~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti~dGlEnaP~Af~gLl~G~N~GK~vvKv~~  340 (340)
T COG2130         268 LLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVDGLENAPEAFIGLLSGKNFGKLVVKVAD  340 (340)
T ss_pred             HHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEeeehhhhhccHHHHHHHhcCCccceEEEEecC
Confidence            4577799999987722      255788999999999999874 44699999999999999999999999853

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.95  E-value=5.3e-26  Score=181.38  Aligned_cols=210  Identities=25%  Similarity=0.481  Sum_probs=174.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHH-CCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKA-MGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~-~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|++++++++++++..+.|||+++. ...+++|++|+|+|+|++|++++++|++ .|++|+++++++++++
T Consensus       123 ~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~-~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~  201 (338)
T PRK09422        123 IVTADYAVKVPEGLDPAQASSITCAGVTTYKAIK-VSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLA  201 (338)
T ss_pred             EEchHHeEeCCCCCCHHHeehhhcchhHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHH
Confidence            3567789999999999999999999999999984 4458999999999999999999999998 5999999999988877


Q ss_pred             HHHHHcCCCEEEcCCC-H---HHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeE
Q 027664           81 EAVERLGADSFLVSRD-Q---DEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKI  156 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~-~---~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      .+ +++|++.++++.+ .   +.+.+..+++|.++++.++...+..++++++.+|+++.+|......+++...+..+..+
T Consensus       202 ~~-~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  280 (338)
T PRK09422        202 LA-KEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIE  280 (338)
T ss_pred             HH-HHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecHHHHhhcCcE
Confidence            77 7899999988754 2   33444555789666555555578999999999999999987654455566666778888


Q ss_pred             EEEEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          157 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      +.++.....++++.+++++++|.+.+.++.++++++++|++.+.++...||+++.+.
T Consensus       281 ~~~~~~~~~~~~~~~~~l~~~g~l~~~v~~~~~~~~~~a~~~~~~~~~~gkvvv~~~  337 (338)
T PRK09422        281 VVGSLVGTRQDLEEAFQFGAEGKVVPKVQLRPLEDINDIFDEMEQGKIQGRMVIDFT  337 (338)
T ss_pred             EEEecCCCHHHHHHHHHHHHhCCCCccEEEEcHHHHHHHHHHHHcCCccceEEEecC
Confidence            888776667889999999999998776677899999999999999888899998764

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.95  E-value=3.7e-26  Score=186.50  Aligned_cols=209  Identities=18%  Similarity=0.224  Sum_probs=163.0

Q ss_pred             ceEeCCCCCCccccccc-c--chhhhhhhHHH--------hhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCC---eEEE
Q 027664            7 FVVRIPEGAPLDATAPL-L--CAGITVYSPLR--------FYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGV---KVTV   71 (220)
Q Consensus         7 ~~~~ip~~~s~~~aa~~-~--~~~~ta~~~l~--------~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~---~vi~   71 (220)
                      .++++|+++++++|+.+ +  +. .+++.++.        ....+++|++|+|+|+ |++|++++|+|++.|+   +|++
T Consensus       130 ~~~~lP~~l~~~~aal~epl~~~-~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~  208 (410)
T cd08238         130 DCLLIYEGDGYAEASLVEPLSCV-IGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVV  208 (410)
T ss_pred             CeEECCCCCCHHHHhhcchHHHH-HHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEE
Confidence            58999999999998854 2  22 22333322        3345789999999985 9999999999999754   7999


Q ss_pred             EeCCccchHHHHHHc--------CCC-EEEcCCC-H---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664           72 ISTSPSKKSEAVERL--------GAD-SFLVSRD-Q---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus        72 ~~~~~~~~~~~~~~~--------g~~-~~~~~~~-~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      ++.++++++.+ +++        |++ .++++.+ .   +.++++++  ++|++||++|....+..++++++++|+++.+
T Consensus       209 ~~~~~~r~~~a-~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         209 TDVNDERLARA-QRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             EcCCHHHHHHH-HHhccccccccCceEEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEE
Confidence            99998887766 455        665 5677643 2   23455554  7999999999877889999999999988776


Q ss_pred             CCC-CC--CCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          137 GAP-EK--PLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       137 g~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      +.. ..  ..+++...++.+++++.|++.....+++++++++++|++++.  + ++|+|+++++|++.+. ++..||+|+
T Consensus       288 ~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl  366 (410)
T cd08238         288 AGPVDKNFSAPLNFYNVHYNNTHYVGTSGGNTDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGGKKLI  366 (410)
T ss_pred             EccCCCCccccccHHHhhhcCcEEEEeCCCCHHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCceEEE
Confidence            442 22  246677788899999999988788899999999999999984  4 8999999999999999 667799999


Q ss_pred             EeCCcccc
Q 027664          211 DVANTMKS  218 (220)
Q Consensus       211 ~~~~~~~~  218 (220)
                      .++..++.
T Consensus       367 ~~~~~~~~  374 (410)
T cd08238         367 YTQKPLPL  374 (410)
T ss_pred             ECCCCCCC
Confidence            98665443

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.95  E-value=5.6e-26  Score=184.72  Aligned_cols=208  Identities=20%  Similarity=0.252  Sum_probs=174.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhh--cCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~   78 (220)
                      .++...++++|+++++++++.+++.+.|||+++...  ..++++++|+|+|+ |++|++++++|++.|+++++++.++++
T Consensus       151 ~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~  230 (393)
T cd08246         151 LVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEK  230 (393)
T ss_pred             EechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence            467789999999999999999999999999998765  45789999999997 999999999999999998888888877


Q ss_pred             hHHHHHHcCCCEEEcCCCH-------------------------HHHHHhcC---CccEEEEcCCCcccHHHHHhccccC
Q 027664           79 KSEAVERLGADSFLVSRDQ-------------------------DEMQAAMG---TMDGIIDTVSAVHPLMPLIGLLKSQ  130 (220)
Q Consensus        79 ~~~~~~~~g~~~~~~~~~~-------------------------~~~~~~~~---~~d~v~d~~g~~~~~~~~~~~l~~~  130 (220)
                      ++.+ +++|++.++++.+.                         +.+.++++   ++|++|||+|.. .+..++++++++
T Consensus       231 ~~~~-~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~-~~~~~~~~l~~~  308 (393)
T cd08246         231 AEYC-RALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRA-TFPTSVFVCDRG  308 (393)
T ss_pred             HHHH-HHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchH-hHHHHHHHhccC
Confidence            7666 67999988876331                         12334443   699999999985 688999999999


Q ss_pred             CEEEEeCCCCC-CCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcC-CCcee
Q 027664          131 GKLVLLGAPEK-PLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKA-DVRYR  207 (220)
Q Consensus       131 G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~-~~~gk  207 (220)
                      |+++.+|.... ...++...+..++.++.+.+....+++..++++++++.+.+.+ ++|+++++++|++.+.++ ...||
T Consensus       309 G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~~gk  388 (393)
T cd08246         309 GMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFANDREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMHRNQHHVGN  388 (393)
T ss_pred             CEEEEEcccCCCCCCCcHHHHhhheeEEEecccCcHHHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHHhCccccce
Confidence            99999986543 2455666677788889998887778899999999999998766 899999999999999988 67789


Q ss_pred             EEEE
Q 027664          208 FVID  211 (220)
Q Consensus       208 ~vv~  211 (220)
                      +++-
T Consensus       389 vvv~  392 (393)
T cd08246         389 MAVL  392 (393)
T ss_pred             EEEe
Confidence            8863

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.95  E-value=6.4e-26  Score=179.81  Aligned_cols=207  Identities=20%  Similarity=0.279  Sum_probs=172.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .+++..++++|+++++++++++++.+.++|+++.. ..+++|++|+|+|+ |.+|++++|+|+++|+++++++.++++++
T Consensus       100 ~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~-~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~  178 (324)
T cd08292         100 VAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDF-LGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVA  178 (324)
T ss_pred             EEchHHeEECCCCCCHHHhhhccccHHHHHHHHHh-hCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHH
Confidence            46778999999999999999999999999998865 55899999999987 99999999999999999999999988877


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      .+ +.+|++.++++.+.+   .+.+.++  ++|++|||+|+. ....++++++++|+++.+|.... ..+++....+.++
T Consensus       179 ~~-~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  256 (324)
T cd08292         179 EL-RALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGGK-LAGELLSLLGEGGTLVSFGSMSGEPMQISSGDLIFKQ  256 (324)
T ss_pred             HH-HhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCCh-hHHHHHHhhcCCcEEEEEecCCCCCCcCCHHHHhhCC
Confidence            77 458999888877643   3444444  799999999987 67899999999999999987533 3455555567789


Q ss_pred             eEEEEEecCC----------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          155 KIVGGSLIGG----------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~~~~~~~~~----------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++.++....          ...++.+++++.+|.+.+.+ +.|+++++++|++.+.++...+|++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         257 ATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLPVEAVFDLGDAAKAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             CEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCccccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence            9998876542          24578889999999998666 799999999999999888777898864

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.94  E-value=1.3e-25  Score=182.75  Aligned_cols=214  Identities=21%  Similarity=0.259  Sum_probs=178.7

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHh--hcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRF--YGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~   78 (220)
                      .++++.++++|+++++++++.+.+.+.+||+++..  ...+.+|++++|+|+ |++|++++++|+++|+++++++.++++
T Consensus       147 ~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~  226 (398)
T TIGR01751       147 LVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEK  226 (398)
T ss_pred             EechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHH
Confidence            46778899999999999999999999999999865  355789999999997 999999999999999998888888776


Q ss_pred             hHHHHHHcCCCEEEcCCCH-------------------------HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCC
Q 027664           79 KSEAVERLGADSFLVSRDQ-------------------------DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQG  131 (220)
Q Consensus        79 ~~~~~~~~g~~~~~~~~~~-------------------------~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G  131 (220)
                      ++.+ +++|++.++|+.+.                         +.+.+.++  ++|++|||+|.. .+...+++++++|
T Consensus       227 ~~~~-~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~-~~~~~~~~l~~~G  304 (398)
T TIGR01751       227 AEYC-RELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRA-TFPTSVFVCRRGG  304 (398)
T ss_pred             HHHH-HHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHH-HHHHHHHhhccCC
Confidence            6655 67999999986532                         11223333  699999999975 6888999999999


Q ss_pred             EEEEeCCCCCC-CCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEE
Q 027664          132 KLVLLGAPEKP-LELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFV  209 (220)
Q Consensus       132 ~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~v  209 (220)
                      +++.+|..... .+++...++.++.++.+......+++++++++++++.+.+.+ +++++++++++++.+.+++..||+|
T Consensus       305 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvv  384 (398)
T TIGR01751       305 MVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFANLREAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVHRNHHQGNVA  384 (398)
T ss_pred             EEEEEccccCCCCCcCHHHHhhcccEEEccccCcHHHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHHcCCCCceEE
Confidence            99999876542 455666667778888888777777788999999999998767 8999999999999999999889999


Q ss_pred             EEeCCccc
Q 027664          210 IDVANTMK  217 (220)
Q Consensus       210 v~~~~~~~  217 (220)
                      +.++.+.+
T Consensus       385 v~~~~~~~  392 (398)
T TIGR01751       385 VLVLAPRP  392 (398)
T ss_pred             EEeCCCCC
Confidence            99986654

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.94  E-value=1.2e-25  Score=180.19  Aligned_cols=209  Identities=28%  Similarity=0.374  Sum_probs=174.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++++++.+.|||++++....++++++|+|+|+|++|++++|+|+..|+ +|++++.++++..
T Consensus       135 ~~~~~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~  214 (350)
T cd08240         135 IVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLE  214 (350)
T ss_pred             EecHHHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            456678899999999999999999999999999888766789999999889999999999999999 7888888777666


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeE
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKI  156 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      .+ +++|++.+++..+.+   .+.+..+ ++|++||++|....+..++++++++|+++.+|........+......++.+
T Consensus       215 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~  293 (350)
T cd08240         215 AA-KAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALT  293 (350)
T ss_pred             HH-HHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCCcccHHHHhhcCcE
Confidence            65 779998888876532   3343333 799999999975578999999999999999987654433444445558889


Q ss_pred             EEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          157 VGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      +.+.+....+++..+++++++|.+.+.+ ..|+++++++|++.+.+++..+|++++
T Consensus       294 i~~~~~~~~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  349 (350)
T cd08240         294 IQGSYVGSLEELRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLK  349 (350)
T ss_pred             EEEcccCCHHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence            9988877778899999999999988655 789999999999999988888999875

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.94  E-value=1.7e-25  Score=178.74  Aligned_cols=209  Identities=34%  Similarity=0.603  Sum_probs=178.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++++.++++|++++++++++++..+.|||+++... .+++++++||+|+ +.+|++++++|++.|++|++++.++++.+
T Consensus       126 ~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~~-~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~  204 (341)
T cd08297         126 IADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKA-GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLE  204 (341)
T ss_pred             EeccccEEECCCCCCHHHHHHHHcchHHHHHHHHhc-CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence            467789999999999999999999999999998776 5899999999997 67999999999999999999999988777


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +.+|++.++++.+.+   .+.+..  +++|+++||.+.......++++++.+|+++.+|..... .+++...+..++
T Consensus       205 ~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  283 (341)
T cd08297         205 LA-KELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRG  283 (341)
T ss_pred             HH-HHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcc
Confidence            66 679999998877643   344443  37999999887666788999999999999999876543 355556667889


Q ss_pred             eEEEEEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          155 KIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .++.+......++++.++++++++.+.+.++.|++++++++++.+..+...||+++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         284 ITIVGSLVGTRQDLQEALEFAARGKVKPHIQVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             cEEEEeccCCHHHHHHHHHHHHcCCCcceeEEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            9998877666788999999999999987668899999999999999988889999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.94  E-value=2.2e-25  Score=180.57  Aligned_cols=209  Identities=16%  Similarity=0.203  Sum_probs=156.2

Q ss_pred             cccc--cceEeCCCCCCc----cccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEE-eC
Q 027664            2 VADE--HFVVRIPEGAPL----DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVI-ST   74 (220)
Q Consensus         2 ~v~~--~~~~~ip~~~s~----~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~-~~   74 (220)
                      ++|+  .+++++|++++.    ++++++.+.+.++|+++... .+++|++|+|.|+|++|++++|+|+.+|++++++ +.
T Consensus       140 ~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~~~~-~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~  218 (393)
T TIGR02819       140 MVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGAVTA-GVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDL  218 (393)
T ss_pred             EechhhCceEECCCcccccccccceeeeccHHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            4554  369999998754    45678888999999998764 5799999999889999999999999999975554 44


Q ss_pred             CccchHHHHHHcCCCEEEcCCCH---HHHHHhcC--CccEEEEcCCCc--------------ccHHHHHhccccCCEEEE
Q 027664           75 SPSKKSEAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAV--------------HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~--~~d~v~d~~g~~--------------~~~~~~~~~l~~~G~~v~  135 (220)
                      +++++ ++++++|++.+....+.   +.+.+.++  ++|++|||+|.+              ..++.++++++++|+++.
T Consensus       219 ~~~r~-~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~  297 (393)
T TIGR02819       219 NPARL-AQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI  297 (393)
T ss_pred             CHHHH-HHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence            55454 45578999754332222   33555554  799999999986              368999999999999999


Q ss_pred             eCCCC-CCC------------CCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccc--e--EEeecccHHHHHHH
Q 027664          136 LGAPE-KPL------------ELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I--EVIPADYVNTAMER  198 (220)
Q Consensus       136 ~g~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~--~~~~~~~~~~a~~~  198 (220)
                      +|... +..            ++.....+.+++++.+......+.+..+++++.+|++++.  +  ++|+|+++++||+.
T Consensus       298 ~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~  377 (393)
T TIGR02819       298 PGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQTPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAE  377 (393)
T ss_pred             eeecCCcccccccccccccccccchHHhhccCceEEeccCChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHH
Confidence            99863 211            2223344566677776543333444789999999999863  3  68999999999999


Q ss_pred             HHcCCCceeEEEEeC
Q 027664          199 LAKADVRYRFVIDVA  213 (220)
Q Consensus       199 ~~~~~~~gk~vv~~~  213 (220)
                      +.++. .+|+++.++
T Consensus       378 ~~~~~-~~Kvvi~~~  391 (393)
T TIGR02819       378 FDAGA-AKKFVIDPH  391 (393)
T ss_pred             HhhCC-ceEEEEeCC
Confidence            98775 489999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=2.2e-25  Score=178.60  Aligned_cols=207  Identities=22%  Similarity=0.262  Sum_probs=172.5

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++++++.+.|||+++. ...+++|++++|+|+ |++|++++++|++.|++++.++.++ +++
T Consensus       138 ~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~~-~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~  215 (350)
T cd08274         138 VVPAENAYPVNSPLSDVELATFPCSYSTAENMLE-RAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEE  215 (350)
T ss_pred             EecHHHceeCCCCCCHHHHHhcccHHHHHHHHHh-hcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhH
Confidence            4677889999999999999999999999999984 455899999999998 9999999999999999998888665 555


Q ss_pred             HHHHHcCCCEEEcCCCHHHH-HHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCCeE
Q 027664           81 EAVERLGADSFLVSRDQDEM-QAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRKI  156 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~-~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~  156 (220)
                      .+ +.+|++.+++..+.... ...+  +++|++|||+|+. .++.++++++++|+++.+|..... ..++...++.++.+
T Consensus       216 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  293 (350)
T cd08274         216 AV-RALGADTVILRDAPLLADAKALGGEPVDVVADVVGGP-LFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLT  293 (350)
T ss_pred             HH-HhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCHH-HHHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceE
Confidence            55 78998766654432211 2222  2799999999986 689999999999999999866443 46666677889999


Q ss_pred             EEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          157 VGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +.++.......++++++++.++.+.+.+ +.|+++++++|++.+..+...+|+|+++
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         294 LFGSTLGTREVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             EEEeecCCHHHHHHHHHHHHCCCcccccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            9998887788899999999999998766 8899999999999999888789998863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.94  E-value=3.1e-25  Score=176.84  Aligned_cols=210  Identities=32%  Similarity=0.430  Sum_probs=179.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      .++.+.++++|++++++++++++..+.|||+++.....+++++++||.|+|.+|++++++|+..|++|++++.++++.+.
T Consensus       125 ~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~  204 (338)
T cd08254         125 VVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLEL  204 (338)
T ss_pred             EechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            46678899999999999999999999999999988877899999999888999999999999999999999998877766


Q ss_pred             HHHHcCCCEEEcCCCHH---HHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEE
Q 027664           82 AVERLGADSFLVSRDQD---EMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIV  157 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~---~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  157 (220)
                      + +.+|++.+++..+..   .+.... +++|+++||+|....++.++++++++|+++.+|.......++...+..++.++
T Consensus       205 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  283 (338)
T cd08254         205 A-KELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRI  283 (338)
T ss_pred             H-HHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHHHHhhCccEE
Confidence            6 678998888766532   231222 27999999998766788999999999999999876544556666778888889


Q ss_pred             EEEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          158 GGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .+++....+.+..++++++++.+.+.++.+++++++++++.+.+++..+|+|+++
T Consensus       284 ~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         284 IGSFGGTPEDLPEVLDLIAKGKLDPQVETRPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             EEeccCCHHHHHHHHHHHHcCCCcccceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            9888777788999999999999886678899999999999999998889999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.94  E-value=9e-25  Score=162.35  Aligned_cols=211  Identities=20%  Similarity=0.268  Sum_probs=174.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      +.+++.++++++.++++.||++....+|||.+|.+.-.+++|++|+-.|+ +.+|++++|+|+++|++-+.++++....+
T Consensus       120 v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie  199 (354)
T KOG0025|consen  120 VFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE  199 (354)
T ss_pred             eecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence            46788999999999999999999999999999999888999999999998 99999999999999999998888877655


Q ss_pred             HHH---HHcCCCEEEcCCCHH--HHHHh---cCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhh
Q 027664           81 EAV---ERLGADSFLVSRDQD--EMQAA---MGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLL  151 (220)
Q Consensus        81 ~~~---~~~g~~~~~~~~~~~--~~~~~---~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~  151 (220)
                      +++   +.+|+++++...+..  ...+.   ..++.+.|||+|+.+ .....+.|.+||.++.+|.+.. +.+++...+.
T Consensus       200 el~~~Lk~lGA~~ViTeeel~~~~~~k~~~~~~~prLalNcVGGks-a~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lI  278 (354)
T KOG0025|consen  200 ELKKQLKSLGATEVITEEELRDRKMKKFKGDNPRPRLALNCVGGKS-ATEIARYLERGGTMVTYGGMSKQPVTVPTSLLI  278 (354)
T ss_pred             HHHHHHHHcCCceEecHHHhcchhhhhhhccCCCceEEEeccCchh-HHHHHHHHhcCceEEEecCccCCCcccccchhe
Confidence            553   467999998544321  12222   227999999999984 6788899999999999999875 5888888999


Q ss_pred             cCCeEEEEEecCCH-----------HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcC-CCceeEEEEeC
Q 027664          152 TGRKIVGGSLIGGL-----------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKA-DVRYRFVIDVA  213 (220)
Q Consensus       152 ~~~~~~~~~~~~~~-----------~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~-~~~gk~vv~~~  213 (220)
                      .|.+.+.|+|...|           +.+.++.++++.|+++.+. +..+|++...|++...+. ...||-++.++
T Consensus       279 FKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e  353 (354)
T KOG0025|consen  279 FKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNCEKVPLADHKTALDAALSKFGKSGKQIIVLE  353 (354)
T ss_pred             eccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence            99999999998654           3367788999999999876 788999999999855443 33467776653

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.94  E-value=8e-25  Score=176.31  Aligned_cols=208  Identities=24%  Similarity=0.358  Sum_probs=169.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++++++++.||+.++.....++++++|+|+|+|++|++++|+|++.|+ ++++++.++++.+
T Consensus       146 ~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~  225 (365)
T cd08278         146 VVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLE  225 (365)
T ss_pred             EecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            467789999999999999999999999999998777778999999999889999999999999999 5777777776655


Q ss_pred             HHHHHcCCCEEEcCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC--CCCCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE--KPLELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~---~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~  154 (220)
                       +.+.+|++.++++.+.   +.+.+..+ ++|+++||+|....+..++++++++|+++.+|...  ....++...++.++
T Consensus       226 -~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  304 (365)
T cd08278         226 -LAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSG  304 (365)
T ss_pred             -HHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcC
Confidence             4478999999887653   23444333 79999999997667899999999999999998753  23456666666788


Q ss_pred             eEEEEEecCC---HHHHHHHHHHHHcCCCcc-ce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          155 KIVGGSLIGG---LKETQEMIDFAAKHNIRA-DI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~~~~~~~~~---~~~~~~~~~~i~~g~i~~-~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++.++....   .+.++.+++++++|.+.+ .+ ..|+++++++|++.+++++. .|++++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~~~~~-~k~~~~  365 (365)
T cd08278         305 KTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTFYPFEDINQAIADSESGKV-IKPVLR  365 (365)
T ss_pred             ceEEEeecCCcChHHHHHHHHHHHHcCCCChHHheEEecHHHHHHHHHHHHCCCc-eEEEEC
Confidence            8888775432   355688899999999865 34 78999999999999988765 487763

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=5.6e-25  Score=177.39  Aligned_cols=209  Identities=23%  Similarity=0.405  Sum_probs=172.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.++++++..+.|||+++.....+.++++|+|+|+|++|++++++|++.|++ +++++.++++.+
T Consensus       147 ~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~  226 (367)
T cd08263         147 VVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLA  226 (367)
T ss_pred             EechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            4567899999999999999999999999999998887788999999998899999999999999997 888888877666


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhhcC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~  153 (220)
                      .+ +.+|++.++++.+.+   .+.+..  .++|++|||+|+......++++++++|+++.+|....  ...++...++.+
T Consensus       227 ~~-~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  305 (367)
T cd08263         227 KA-KELGATHTVNAAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRR  305 (367)
T ss_pred             HH-HHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhC
Confidence            55 779999999876543   344443  2799999999986457889999999999999986543  234555555578


Q ss_pred             CeEEEEEecCC-HHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          154 RKIVGGSLIGG-LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       154 ~~~~~~~~~~~-~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      +.++.++.... .+.++.++++++++.+.+.  + +.|++++++++++.+++++..||+|+.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         306 GIKIIGSYGARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             CeEEEecCCCCcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence            88887765433 4678899999999998864  3 789999999999999998888999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=1.3e-24  Score=173.82  Aligned_cols=204  Identities=23%  Similarity=0.284  Sum_probs=172.6

Q ss_pred             ceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc
Q 027664            7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL   86 (220)
Q Consensus         7 ~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~   86 (220)
                      .++++|++++++++++++..+.|||+++.....+.++++++|+|+|++|++++++|+..|++|++++.++++++.+ +.+
T Consensus       130 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~-~~~  208 (345)
T cd08260         130 NLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELA-REL  208 (345)
T ss_pred             ceEECCCCCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HHh
Confidence            8999999999999999999999999998766678899999999999999999999999999999999998887777 679


Q ss_pred             CCCEEEcCCC-HHH---HHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC---CCCCchhhhcCCeEEE
Q 027664           87 GADSFLVSRD-QDE---MQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP---LELPAFPLLTGRKIVG  158 (220)
Q Consensus        87 g~~~~~~~~~-~~~---~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~~~~~~~~~~~  158 (220)
                      |++.++++.+ .+.   +.+... ++|++|||+|....+...+++++++|+++.+|.....   ..++...+..++.++.
T Consensus       209 g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~  288 (345)
T cd08260         209 GAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIV  288 (345)
T ss_pred             CCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEE
Confidence            9999998876 332   333333 7999999999655688899999999999999876432   3445555567888888


Q ss_pred             EEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          159 GSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      +........++.++++++++.+.+.  + +.++++++++|++.++++...+|+|++
T Consensus       289 ~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~  344 (345)
T cd08260         289 GSHGMPAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT  344 (345)
T ss_pred             eCCcCCHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence            8877777889999999999998753  4 789999999999999998888998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.94  E-value=6.7e-25  Score=175.94  Aligned_cols=205  Identities=18%  Similarity=0.247  Sum_probs=163.0

Q ss_pred             cceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHH
Q 027664            6 HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE   84 (220)
Q Consensus         6 ~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~   84 (220)
                      ..++++|+++++++++.++..+.||++++... .+++|++|||+|+|++|++++|+|+++|+ .+++++.++++. .+.+
T Consensus       131 ~~~~~lP~~~~~~~aa~~~~~~~ta~~~~~~~-~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~-~~~~  208 (351)
T cd08285         131 ANLAPLPDGLTDEQAVMLPDMMSTGFHGAELA-NIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRV-ELAK  208 (351)
T ss_pred             CceEECCCCCCHHHhhhhccchhhHHHHHHcc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHH-HHHH
Confidence            37999999999999999999999999997544 57999999999989999999999999999 577777777655 4447


Q ss_pred             HcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC--CCCCc--hhhhcCCe
Q 027664           85 RLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--LELPA--FPLLTGRK  155 (220)
Q Consensus        85 ~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~--~~~~~~~~  155 (220)
                      ++|++.++++.+.+   .+.+...  ++|++|||+|+...+..++++++++|+++.+|.....  ..++.  +....+..
T Consensus       209 ~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  288 (351)
T cd08285         209 EYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHK  288 (351)
T ss_pred             HcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhcccc
Confidence            89999999876543   3444443  7999999999866789999999999999999876543  23332  22234566


Q ss_pred             EEEEEecC-CHHHHHHHHHHHHcCCCccc---e-EEeecccHHHHHHHHHcCCC-ceeEEEEe
Q 027664          156 IVGGSLIG-GLKETQEMIDFAAKHNIRAD---I-EVIPADYVNTAMERLAKADV-RYRFVIDV  212 (220)
Q Consensus       156 ~~~~~~~~-~~~~~~~~~~~i~~g~i~~~---~-~~~~~~~~~~a~~~~~~~~~-~gk~vv~~  212 (220)
                      ++.+.+.. ..++++++++++++|++++.   + +.++++++++|++.+++++. ..|+++++
T Consensus       289 ~i~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         289 TINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             EEEEeecCCccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence            66665543 45678899999999999982   3 46999999999999998874 68999864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK10083 putative oxidoreductase; Provisional

Probab=99.93  E-value=1.4e-24  Score=173.26  Aligned_cols=209  Identities=18%  Similarity=0.158  Sum_probs=162.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHH-CCCe-EEEEeCCccch
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKA-MGVK-VTVISTSPSKK   79 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~-~g~~-vi~~~~~~~~~   79 (220)
                      .++...++++|+++++++++ +...+.+++.+.. ..++++|++|+|+|+|++|++++|+|+. +|++ ++++++++++.
T Consensus       122 ~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~~~-~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~  199 (339)
T PRK10083        122 VVPAKNAHRIPDAIADQYAV-MVEPFTIAANVTG-RTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERL  199 (339)
T ss_pred             EechHHeEECcCCCCHHHHh-hhchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence            46778899999999998876 5567777886554 4458999999999999999999999996 6995 66666666555


Q ss_pred             HHHHHHcCCCEEEcCCCHHHHHHhcC---CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeE
Q 027664           80 SEAVERLGADSFLVSRDQDEMQAAMG---TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKI  156 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~~~~~~~~~---~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      + +++++|++.++++.+.+..+.+.+   ++|++|||+|.+..+..++++++++|+++.+|.......++...+..++++
T Consensus       200 ~-~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  278 (339)
T PRK10083        200 A-LAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELS  278 (339)
T ss_pred             H-HHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCceecHHHHhhcceE
Confidence            4 447899999998765433333322   467999999976578999999999999999987654334445555667788


Q ss_pred             EEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCC-CceeEEEEeCC
Q 027664          157 VGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKAD-VRYRFVIDVAN  214 (220)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~-~~gk~vv~~~~  214 (220)
                      +.+... ....++.+++++++|++.+.  + +.|+++++++|++.++++. ..+|+++.+.+
T Consensus       279 ~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~  339 (339)
T PRK10083        279 IFSSRL-NANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE  339 (339)
T ss_pred             EEEEec-ChhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence            777654 44678999999999999873  4 8999999999999998654 45899998764

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=2e-24  Score=172.20  Aligned_cols=207  Identities=22%  Similarity=0.281  Sum_probs=168.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      .++++ ++++|+++++++++++ ..+.++++++ ....+.+|++|||+|+|.+|.+++|+|+.+|++|++++.++++...
T Consensus       122 ~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~  198 (337)
T cd08261         122 VVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEF  198 (337)
T ss_pred             Eechh-eEECCCCCCHHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHH
Confidence            45677 9999999999999876 5677888887 4556899999999988999999999999999999999888777665


Q ss_pred             HHHHcCCCEEEcCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeE
Q 027664           82 AVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKI  156 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      + +++|+++++++.+.   +.+.+..+  ++|++|||+|+...+..++++++++|+++.+|.......++...+..++++
T Consensus       199 ~-~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~  277 (337)
T cd08261         199 A-RELGADDTINVGDEDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELT  277 (337)
T ss_pred             H-HHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccCHHHHHhCCCE
Confidence            5 78899999987764   33444443  699999999876578899999999999999986654444555555667778


Q ss_pred             EEEEecCCHHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCC-CceeEEEEe
Q 027664          157 VGGSLIGGLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKAD-VRYRFVIDV  212 (220)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~-~~gk~vv~~  212 (220)
                      +.+......+.++.+++++++|.+.+  .+ ..+++++++++++.+.+++ ..+|+|+++
T Consensus       278 ~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         278 ILGSRNATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             EEEeccCChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            87776555667889999999999987  45 7999999999999999874 668999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.93  E-value=1.9e-24  Score=171.30  Aligned_cols=208  Identities=23%  Similarity=0.248  Sum_probs=170.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++...++++|+++++++++++++.+.|||. +.....++++++++|+|+ |++|++++++|+..|++|+++++++++.+
T Consensus       103 ~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~  181 (324)
T cd08244         103 VADVDSLHPVPDGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTA  181 (324)
T ss_pred             EEchHHeEeCCCCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            4677899999999999999999999999964 444556899999999996 99999999999999999999998888776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +.+|++.+++..+.+   .+.+..+  ++|+++||+|+. ....++++++++|+++.+|..... ..++....+.++
T Consensus       182 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  259 (324)
T cd08244         182 LV-RALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGGA-IGRAALALLAPGGRFLTYGWASGEWTALDEDDARRRG  259 (324)
T ss_pred             HH-HHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCChH-hHHHHHHHhccCcEEEEEecCCCCCCccCHHHHhhCC
Confidence            66 789998888876543   3333333  799999999987 578899999999999999876532 344545567788


Q ss_pred             eEEEEEecCC------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          155 KIVGGSLIGG------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~~~~~~~~~------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .++.+.....      .+.++.+++++.++.+.+.+ +.|+++++++|++.+.+++..+|+++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         260 VTVVGLLGVQAERGGLRALEARALAEAAAGRLVPVVGQTFPLERAAEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             cEEEEeecccCCHHHHHHHHHHHHHHHHCCCccCccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence            8888776533      24577788999999987666 8999999999999999988889999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=3e-24  Score=171.54  Aligned_cols=207  Identities=19%  Similarity=0.228  Sum_probs=163.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++ ++..+.+||+++ ...++++|++|+|+|+|++|.+++|+|+.+|++ +++++.++++. 
T Consensus       123 ~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~-~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-  199 (341)
T cd08262         123 LLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV-RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERR-  199 (341)
T ss_pred             EechHHeEECCCCCCHHHhh-hhhhHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-
Confidence            56778999999999999876 677888999986 455689999999998899999999999999996 55555555554 


Q ss_pred             HHHHHcCCCEEEcCCCHHH------HHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhc
Q 027664           81 EAVERLGADSFLVSRDQDE------MQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~------~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  152 (220)
                      .+.+.+|+++++++.+.+.      +....  +++|++|||+|+...+..++++++++|+++.+|.........+.....
T Consensus       200 ~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~  279 (341)
T cd08262         200 ALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESDNIEPALAIR  279 (341)
T ss_pred             HHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCCccCHHHHhh
Confidence            4557899988888765321      22222  269999999998546788999999999999998764333333333355


Q ss_pred             CCeEEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          153 GRKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      ++.++.+......+.++.+++++++|.+.+.  + +.|++++++++++.+.+++..+|+|++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         280 KELTLQFSLGYTPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             cceEEEEEecccHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            7778877766666788999999999999853  3 789999999999999998888999874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.93  E-value=1.4e-24  Score=172.93  Aligned_cols=206  Identities=23%  Similarity=0.322  Sum_probs=170.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++.+++.+.++|+++... .++++++++|+|+ |.+|++++++++..|+++++++.++++++
T Consensus       123 ~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~  201 (334)
T PRK13771        123 KVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAK  201 (334)
T ss_pred             ecchhceEECCCCCCHHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            467788999999999999999999999999999877 6899999999998 99999999999999999999999888776


Q ss_pred             HHHHHcCCCEEEcCCC-HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCC--CCCchhhhcCCeEE
Q 027664           81 EAVERLGADSFLVSRD-QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL--ELPAFPLLTGRKIV  157 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~~~~~  157 (220)
                      .+ +.+ ++++++..+ .+.+++. +++|+++||+|+. ....++++++++|+++.+|......  .......+.++.++
T Consensus       202 ~~-~~~-~~~~~~~~~~~~~v~~~-~~~d~~ld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  277 (334)
T PRK13771        202 IV-SKY-ADYVIVGSKFSEEVKKI-GGADIVIETVGTP-TLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEI  277 (334)
T ss_pred             HH-HHH-HHHhcCchhHHHHHHhc-CCCcEEEEcCChH-HHHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEE
Confidence            66 566 666666542 1233333 4799999999986 5889999999999999998754322  23333446678888


Q ss_pred             EEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          158 GGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .+......++++.+++++++|.+++.+ +.|+++++++|++.+.++...+|+++.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  333 (334)
T PRK13771        278 IGHISATKRDVEEALKLVAEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVKP  333 (334)
T ss_pred             EEecCCCHHHHHHHHHHHHcCCCcceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence            887766778899999999999998666 7999999999999999888789999865

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.93  E-value=1.7e-24  Score=172.93  Aligned_cols=209  Identities=20%  Similarity=0.276  Sum_probs=170.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc----
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP----   76 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~----   76 (220)
                      .++.+.++++|+++++++++++++.+.|||+++.....+++|++|||+|+ |++|++++|+|++.|+++++++.++    
T Consensus       106 ~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~  185 (341)
T cd08290         106 VVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLE  185 (341)
T ss_pred             eccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcch
Confidence            46778999999999999999999999999999987777899999999987 9999999999999999999888876    


Q ss_pred             cchHHHHHHcCCCEEEcCCCH---H---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCch
Q 027664           77 SKKSEAVERLGADSFLVSRDQ---D---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAF  148 (220)
Q Consensus        77 ~~~~~~~~~~g~~~~~~~~~~---~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~  148 (220)
                      ++++.+ +.+|+++++++.+.   +   .+....+ ++|++|||+|+. .....+++++++|+++.+|.... ...++..
T Consensus       186 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  263 (341)
T cd08290         186 ELKERL-KALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVGGK-SATELARLLSPGGTMVTYGGMSGQPVTVPTS  263 (341)
T ss_pred             hHHHHH-HhcCCCEEEeCcccccccHHHHHHHHcCCCceEEEECcCcH-hHHHHHHHhCCCCEEEEEeccCCCCcccCHH
Confidence            345555 67999999887653   2   2333333 699999999987 57788999999999999986443 2445555


Q ss_pred             hhhcCCeEEEEEecCCH----------HHHHHHHHHHHcCCCccce-EEe---ecccHHHHHHHHHcCCCceeEEEEe
Q 027664          149 PLLTGRKIVGGSLIGGL----------KETQEMIDFAAKHNIRADI-EVI---PADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       149 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~g~i~~~~-~~~---~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ..+.++.++.+......          ..++.+++++.+|.+.+.+ ..+   ++++++++++.+.++...+|+|+.+
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         264 LLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAPPVEKVTDDPLEEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             HHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCCcccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence            56788889888765322          2477788999999998765 677   9999999999999888889999864

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.93  E-value=2.8e-24  Score=173.17  Aligned_cols=206  Identities=22%  Similarity=0.372  Sum_probs=167.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++.+++.+.+||+++.....+++|++|||+|+|++|++++++|+++|++ +++++.++++.+
T Consensus       143 ~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~  222 (365)
T cd05279         143 VVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFE  222 (365)
T ss_pred             EecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            4677899999999999999999999999999987777789999999998899999999999999995 666666776666


Q ss_pred             HHHHHcCCCEEEcCCCH--H---HHHHhc-CCccEEEEcCCCcccHHHHHhccc-cCCEEEEeCCCC--CCCCCCchhhh
Q 027664           81 EAVERLGADSFLVSRDQ--D---EMQAAM-GTMDGIIDTVSAVHPLMPLIGLLK-SQGKLVLLGAPE--KPLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~--~---~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~-~~G~~v~~g~~~--~~~~~~~~~~~  151 (220)
                      .+ +++|++.+++..+.  +   .+.+.. +++|++||++|....+..++++++ ++|+++.+|...  ....++...+ 
T Consensus       223 ~~-~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-  300 (365)
T cd05279         223 KA-KQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-  300 (365)
T ss_pred             HH-HHhCCCeecccccccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-
Confidence            55 78999988887654  2   233333 389999999987557889999999 999999998754  3456666666 


Q ss_pred             cCCeEEEEEecC---CHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          152 TGRKIVGGSLIG---GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       152 ~~~~~~~~~~~~---~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      .++.++.|.+..   ..+.+..++++++++.+++.  + ++|+++++++|++.+++++. .|+++
T Consensus       301 ~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~~~~~  364 (365)
T cd05279         301 LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGES-IRTIL  364 (365)
T ss_pred             hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCc-eeeee
Confidence            677788877543   34678889999999998864  3 88999999999999887665 46665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.93  E-value=2.3e-24  Score=170.74  Aligned_cols=208  Identities=19%  Similarity=0.238  Sum_probs=172.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++.+++.+.+||+++.....+.+|++|+|+|+ |.+|++++++|+++|+++++++.++++++
T Consensus        98 ~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~  177 (323)
T cd05282          98 VAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVE  177 (323)
T ss_pred             ecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHH
Confidence            45677899999999999999999999999999888877899999999997 89999999999999999999999988877


Q ss_pred             HHHHHcCCCEEEcCCCHHH---HHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQDE---MQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~---~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +++|++.++++.+.+.   +.+.++  ++|++|||+|+. .....+++++++|+++.+|..... ..++...+..++
T Consensus       178 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  255 (323)
T cd05282         178 EL-KALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGGE-SATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFIFKD  255 (323)
T ss_pred             HH-HhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHhhCCCCEEEEEccCCCCCCCCCHHHHhhcC
Confidence            66 7899999998776433   334443  799999999987 467889999999999999876542 445555555588


Q ss_pred             eEEEEEecCCH----------HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          155 KIVGGSLIGGL----------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~~~~~~~~~~----------~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++.+......          +.++.+++++.+|.+.+.+ +.|+++++++|++.+..++..+|+|++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  323 (323)
T cd05282         256 ITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAEQPGRGGKVLLT  323 (323)
T ss_pred             ceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccCccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence            88888765432          3477788999999988765 899999999999999988877898863

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.93  E-value=4.1e-24  Score=170.97  Aligned_cols=208  Identities=19%  Similarity=0.267  Sum_probs=167.6

Q ss_pred             cccc--ceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccch
Q 027664            3 ADEH--FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKK   79 (220)
Q Consensus         3 v~~~--~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~   79 (220)
                      ++++  .++++|+++++++++.+++.+++||.++.....+.++++++|.|+|++|.+++|+|+..| .++++++.++++.
T Consensus       125 v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~  204 (345)
T cd08286         125 IPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRL  204 (345)
T ss_pred             cccccCceEECCCCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence            3444  899999999999999999999999987666666899999999989999999999999999 6888877766554


Q ss_pred             HHHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCC
Q 027664           80 SEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGR  154 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  154 (220)
                      . +.+++|++.++++.+.+   .+.+...  ++|++|||+|....++.++++++++|+++.+|.......+++..++.++
T Consensus       205 ~-~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~  283 (345)
T cd08286         205 E-VAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKLWIKN  283 (345)
T ss_pred             H-HHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHHHhhcC
Confidence            4 55789999998876533   3344433  7999999998765788899999999999999876544566666667889


Q ss_pred             eEEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCC--ceeEEEEe
Q 027664          155 KIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADV--RYRFVIDV  212 (220)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~--~gk~vv~~  212 (220)
                      .++.+.... ...++.++++++++.+.+.  + ++|++++++++++.+.....  ..|+++++
T Consensus       284 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         284 ITITTGLVD-TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             cEEEeecCc-hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence            898876542 3567888999999998753  3 78999999999999987643  36998864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.93  E-value=3.2e-24  Score=170.63  Aligned_cols=213  Identities=22%  Similarity=0.292  Sum_probs=173.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++++.+.+||+++.....+++|++++|+|+ |.+|++++++|++.|+++++++.++++++
T Consensus       100 ~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~  179 (334)
T PTZ00354        100 VAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVD  179 (334)
T ss_pred             EecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            46778899999999999999999999999999988777899999999996 99999999999999999888888887777


Q ss_pred             HHHHHcCCCEEEcCCCHH----HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CC-CCchhhhc
Q 027664           81 EAVERLGADSFLVSRDQD----EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LE-LPAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~----~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~-~~~~~~~~  152 (220)
                      .+ +.+|++.++++.+.+    .+.+..+  ++|++|||+|+. .+..++++++++|+++.+|...+. .. ++...++.
T Consensus       180 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~  257 (334)
T PTZ00354        180 FC-KKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGS-YLSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLR  257 (334)
T ss_pred             HH-HHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCchH-HHHHHHHHhccCCeEEEEecCCCCcccccCHHHHHh
Confidence            66 679998888876533    2334442  799999999876 688999999999999999865432 22 66666667


Q ss_pred             CCeEEEEEecCCH----------HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 027664          153 GRKIVGGSLIGGL----------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       153 ~~~~~~~~~~~~~----------~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~~  216 (220)
                      +..++.++.....          +.++.+++++.++.+.+.+ +.+++++++++++.+..++..+|+|+.+.+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~~~~  332 (334)
T PTZ00354        258 KRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVNEPL  332 (334)
T ss_pred             hCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhCCCCceEEEecCCCC
Confidence            7778777654331          2246778889999988766 88999999999999998887899999987654

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.93  E-value=5.7e-24  Score=169.75  Aligned_cols=206  Identities=21%  Similarity=0.264  Sum_probs=166.5

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      +++++.++++|+++++++|+. ...+.++|+++.....+ ++++|||.|+|.+|++++|+|+++|+ ++++++.++++.+
T Consensus       127 ~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~  204 (339)
T cd08232         127 VVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLA  204 (339)
T ss_pred             EechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            567789999999999999875 67888999999887765 89999998889999999999999999 8888888776665


Q ss_pred             HHHHHcCCCEEEcCCCHHHHHHhc---CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEE
Q 027664           81 EAVERLGADSFLVSRDQDEMQAAM---GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIV  157 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~---~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  157 (220)
                       +++++|++.++++.+.+ +.+..   +++|+++||+|....++..+++++++|+++.+|........+...++.++.++
T Consensus       205 -~~~~~g~~~vi~~~~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  282 (339)
T cd08232         205 -VARAMGADETVNLARDP-LAAYAADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDL  282 (339)
T ss_pred             -HHHHcCCCEEEcCCchh-hhhhhccCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccCcHHHHhhcceEE
Confidence             55788999998876544 32322   26999999999755688999999999999999865533444444556678888


Q ss_pred             EEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          158 GGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .+.... .+.++.+++++++|.+++.  + ++|+++++++|++.+.+++..||+|+++
T Consensus       283 ~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  339 (339)
T cd08232         283 RGSFRF-DDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF  339 (339)
T ss_pred             EEEecC-HHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence            877643 4568889999999988643  4 7899999999999999888789999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=4.7e-24  Score=167.74  Aligned_cols=203  Identities=23%  Similarity=0.326  Sum_probs=167.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++++.+.|||+++...... +|++++|+|+ |++|.++++++++.|++|+.+++++++.+
T Consensus        93 ~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  171 (305)
T cd08270          93 AVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAE  171 (305)
T ss_pred             EEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            467789999999999999999999999999999888754 6999999998 99999999999999999999998887776


Q ss_pred             HHHHHcCCCEEEcCCCHHHHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhc--CCeE
Q 027664           81 EAVERLGADSFLVSRDQDEMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLT--GRKI  156 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~--~~~~  156 (220)
                      .+ +++|++..++..+     +.. +++|+++||+|+. ....++++++.+|+++.+|..... ..++...+..  ++.+
T Consensus       172 ~~-~~~g~~~~~~~~~-----~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  244 (305)
T cd08270         172 GL-RELGAAEVVVGGS-----ELSGAPVDLVVDSVGGP-QLARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGGRR  244 (305)
T ss_pred             HH-HHcCCcEEEeccc-----cccCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEEeccCCCcccccHHHHhcccccce
Confidence            66 5699876654322     112 3799999999987 688999999999999999875432 3344444444  5788


Q ss_pred             EEEEecCC----HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          157 VGGSLIGG----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       157 ~~~~~~~~----~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +.++....    ...++.+++++.++++.+.+ ++++++++++|++.+.+++..||+|+.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  305 (305)
T cd08270         245 LYTFFLYDGEPLAADLARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALLARRFRGKAVLDV  305 (305)
T ss_pred             EEEEEccCHHHHHHHHHHHHHHHHCCCccceeccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            88877653    35678889999999998766 7999999999999999888889999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.93  E-value=4e-25  Score=188.63  Aligned_cols=213  Identities=20%  Similarity=0.244  Sum_probs=176.3

Q ss_pred             CcccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCccch
Q 027664            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         1 ~~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~g~~G~~~~~la~~~g~~vi~~~~~~~~~   79 (220)
                      +.++.+.++.+|++.++++|++.|+.|.|+|+|+...+..++|+++||++ +|++|++++.+|.++|++|+.++.+.+++
T Consensus      1511 ~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~VFTTVGSaEKR 1590 (2376)
T KOG1202|consen 1511 VLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTVFTTVGSAEKR 1590 (2376)
T ss_pred             hhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEEEEecCcHHHH
Confidence            35677889999999999999999999999999999999999999999996 59999999999999999999999999999


Q ss_pred             HHHHHHcC---CCEEEcCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhh
Q 027664           80 SEAVERLG---ADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPL  150 (220)
Q Consensus        80 ~~~~~~~g---~~~~~~~~~~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~  150 (220)
                      +.+++.++   .+.+-|.++.   .-+.+-++  |+|+|+++..+. .++..++||+.+||+..+|-..- .-+...+.+
T Consensus      1591 efL~~rFPqLqe~~~~NSRdtsFEq~vl~~T~GrGVdlVLNSLaeE-kLQASiRCLa~~GRFLEIGKfDLSqNspLGMav 1669 (2376)
T KOG1202|consen 1591 EFLLKRFPQLQETNFANSRDTSFEQHVLWHTKGRGVDLVLNSLAEE-KLQASIRCLALHGRFLEIGKFDLSQNSPLGMAV 1669 (2376)
T ss_pred             HHHHHhchhhhhhcccccccccHHHHHHHHhcCCCeeeehhhhhHH-HHHHHHHHHHhcCeeeeecceecccCCcchhhh
Confidence            99988776   3555555553   33444443  899999999987 59999999999999999986542 222334456


Q ss_pred             hcCCeEEEEEecC-----CHHHHHHHHHHHHcC----CCccce-EEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          151 LTGRKIVGGSLIG-----GLKETQEMIDFAAKH----NIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       151 ~~~~~~~~~~~~~-----~~~~~~~~~~~i~~g----~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      +.+|.+++|....     ..+++.++..++++|    .++|.. ++|+-+++++||++|.+++.+||+|+++-.
T Consensus      1670 fLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikvr~ 1743 (2376)
T KOG1202|consen 1670 FLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKVRA 1743 (2376)
T ss_pred             hhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEEcc
Confidence            8899999997653     346677777776655    566666 899999999999999999999999998843

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.93  E-value=6.5e-24  Score=172.15  Aligned_cols=207  Identities=18%  Similarity=0.182  Sum_probs=166.8

Q ss_pred             cccc--ceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccch
Q 027664            3 ADEH--FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKK   79 (220)
Q Consensus         3 v~~~--~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~   79 (220)
                      ++++  .++++|+++++++|++++..+.|||+++ ....+++|++|+|+|+|++|++++++|++.|+ ++++++.++++.
T Consensus       144 v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~  222 (386)
T cd08283         144 VPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL  222 (386)
T ss_pred             cccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence            4445  7899999999999999999999999999 55668999999999989999999999999998 699998888776


Q ss_pred             HHHHHHcCCCEEEcCCCHH----HHHHhcC--CccEEEEcCCCc---------------------ccHHHHHhccccCCE
Q 027664           80 SEAVERLGADSFLVSRDQD----EMQAAMG--TMDGIIDTVSAV---------------------HPLMPLIGLLKSQGK  132 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~~----~~~~~~~--~~d~v~d~~g~~---------------------~~~~~~~~~l~~~G~  132 (220)
                      +.+ ++++...++++.+.+    .+.++.+  ++|++|||+|+.                     ..+..++++++++|+
T Consensus       223 ~~~-~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~  301 (386)
T cd08283         223 EMA-RSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGT  301 (386)
T ss_pred             HHH-HHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCE
Confidence            665 556333566665432    2344443  799999999753                     246788999999999


Q ss_pred             EEEeCCCCCC-CCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCC-Ccee
Q 027664          133 LVLLGAPEKP-LELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKAD-VRYR  207 (220)
Q Consensus       133 ~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~-~~gk  207 (220)
                      ++.+|..... ..++...++.++.++.+......+.++.+++++.++++.+.  + +.|+++++++|++.+.++. ..+|
T Consensus       302 iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k  381 (386)
T cd08283         302 VSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIK  381 (386)
T ss_pred             EEEEcCCCCCcCccCHHHHHhCCcEEEeccCCchHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEE
Confidence            9999876542 34455456788889888876666788999999999999864  4 7899999999999998876 4589


Q ss_pred             EEEE
Q 027664          208 FVID  211 (220)
Q Consensus       208 ~vv~  211 (220)
                      ++++
T Consensus       382 ~~~~  385 (386)
T cd08283         382 VVLK  385 (386)
T ss_pred             EEec
Confidence            9985

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.93  E-value=5.2e-24  Score=169.37  Aligned_cols=207  Identities=45%  Similarity=0.744  Sum_probs=173.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      .++++.++++|+++++++++.+++.+.+||+++.. ..+.++++++|+|+|.+|++++++|+..|++|+++++++++.+.
T Consensus       123 ~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~  201 (330)
T cd08245         123 VADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKREL  201 (330)
T ss_pred             EEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46778899999999999999999999999999877 45799999999998889999999999999999999999888776


Q ss_pred             HHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCCeEEEEE
Q 027664           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRKIVGGS  160 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~  160 (220)
                      + +++|++.+++..+.+......+++|+++||++.......++++++.+|+++.++..... ..+....++.++.++.++
T Consensus       202 ~-~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (330)
T cd08245         202 A-RKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGS  280 (330)
T ss_pred             H-HHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEe
Confidence            6 67898888876554433333347999999988766788999999999999999865433 233345577788889888


Q ss_pred             ecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEE
Q 027664          161 LIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       161 ~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      .......++.+++++.++.+.+.++.|++++++++++.+.++...+|+|+
T Consensus       281 ~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         281 THGGRADLQEALDFAAEGKVKPMIETFPLDQANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             ccCCHHHHHHHHHHHHcCCCcceEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence            87777889999999999999875689999999999999998888888874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.93  E-value=1e-23  Score=167.16  Aligned_cols=208  Identities=22%  Similarity=0.240  Sum_probs=166.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcC--CCCCC-EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL--DKPGM-HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~--~~~~~-~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      .++++.++++|+++++++++.+++.+.+++.++.....  +.+++ +|+|+|+ |++|.+++++|+++|+++++++.+++
T Consensus       102 ~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~  181 (323)
T TIGR02823       102 RVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAE  181 (323)
T ss_pred             EEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            46778999999999999999999999999988755433  67888 9999997 99999999999999999998888887


Q ss_pred             chHHHHHHcCCCEEEcCCCHH-HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCC
Q 027664           78 KKSEAVERLGADSFLVSRDQD-EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGR  154 (220)
Q Consensus        78 ~~~~~~~~~g~~~~~~~~~~~-~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      +++.+ +++|++.+++..+.+ .++.... ++|+++||+|+. .+..++++++++|+++.+|.... ..+.+...++.++
T Consensus       182 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  259 (323)
T TIGR02823       182 EEDYL-KELGASEVIDREDLSPPGKPLEKERWAGAVDTVGGH-TLANVLAQLKYGGAVAACGLAGGPDLPTTVLPFILRG  259 (323)
T ss_pred             HHHHH-HhcCCcEEEccccHHHHHHHhcCCCceEEEECccHH-HHHHHHHHhCCCCEEEEEcccCCCCccccHHHHhhcc
Confidence            77655 789998888776543 2333433 699999999987 68899999999999999997643 2333435555788


Q ss_pred             eEEEEEecCC------HHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          155 KIVGGSLIGG------LKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~~~~~~~~~------~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++.+.....      ...++.+.+++.++.+.+..+.|+++++++|++.+.+++..+|++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~k~vv~  322 (323)
T TIGR02823       260 VSLLGIDSVYCPMALREAAWQRLATDLKPRNLESITREITLEELPEALEQILAGQHRGRTVVD  322 (323)
T ss_pred             eEEEEEeccccCchhHHHHHHHHHHHhhcCCCcCceeeecHHHHHHHHHHHhCCCccceEEEe
Confidence            8888865321      12355666777788876545899999999999999998888999875

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.93  E-value=9.5e-24  Score=168.77  Aligned_cols=205  Identities=23%  Similarity=0.264  Sum_probs=164.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      +++++.++++|+++++++++.+ ..+.+|++++ ....+++|++++|.|+|++|.+++|+|+++|++ |+++++++++..
T Consensus       124 ~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~  201 (343)
T cd05285         124 NHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLE  201 (343)
T ss_pred             EecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            4677889999999999999876 5778898887 455689999999998899999999999999997 888887776665


Q ss_pred             HHHHHcCCCEEEcCCCHH------HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhc
Q 027664           81 EAVERLGADSFLVSRDQD------EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~------~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  152 (220)
                      .+ +++|++.++++.+.+      .+.+..+  ++|++|||+|....++..+++++++|+++.+|.......++...+..
T Consensus       202 ~~-~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  280 (343)
T cd05285         202 FA-KELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASL  280 (343)
T ss_pred             HH-HHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHhh
Confidence            55 678999998876533      3444443  69999999998656889999999999999998654434444455667


Q ss_pred             CCeEEEEEecCCHHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCC-CceeEEE
Q 027664          153 GRKIVGGSLIGGLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKAD-VRYRFVI  210 (220)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~-~~gk~vv  210 (220)
                      +++.+.++.... +.++.++++++++.+.+  .+ ++|+++++.+|++.+.+++ ..+|+++
T Consensus       281 ~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~  341 (343)
T cd05285         281 REIDIRGVFRYA-NTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI  341 (343)
T ss_pred             CCcEEEEeccCh-HHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence            788888776443 67888999999998753  34 7899999999999998875 3489988

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.92  E-value=6.4e-24  Score=169.93  Aligned_cols=209  Identities=20%  Similarity=0.265  Sum_probs=165.9

Q ss_pred             ccccc--ceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccc
Q 027664            2 VADEH--FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSK   78 (220)
Q Consensus         2 ~v~~~--~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~   78 (220)
                      +++++  .++++|+++++++++++++.+.|||+++ ....++++++|||.|+|.+|++++|+|+.+|+ +++++..++++
T Consensus       126 ~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~  204 (347)
T cd05278         126 RVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPER  204 (347)
T ss_pred             EecchhCeEEECCCCCCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            34555  8999999999999999999999999998 45568999999998889999999999999997 88888776655


Q ss_pred             hHHHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCC-Cchhhhc
Q 027664           79 KSEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLEL-PAFPLLT  152 (220)
Q Consensus        79 ~~~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~  152 (220)
                      .+ .++.+|++.++++.+.+   .+++..+  ++|++|||+|....+...+++++++|+++.+|........ .....+.
T Consensus       205 ~~-~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  283 (347)
T cd05278         205 LD-LAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFG  283 (347)
T ss_pred             HH-HHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhh
Confidence            44 55788999998877643   3444433  7999999999854788999999999999999865443211 2222346


Q ss_pred             CCeEEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCC-ceeEEEEe
Q 027664          153 GRKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADV-RYRFVIDV  212 (220)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~-~gk~vv~~  212 (220)
                      ++.++.+......+.++.+++++.+|.+.+.  + ..|+++++++|++.+..++. .+|+++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         284 KNLTFKTGLVPVRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             ceeEEEeeccCchhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence            7778777665556788999999999999863  3 78999999999999988776 68988763

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=6.9e-24  Score=167.95  Aligned_cols=200  Identities=19%  Similarity=0.228  Sum_probs=160.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      .++++.++++|+++++++++.+ ....+++.++. ...++++++|+|+|+|.+|++++|+|+.+|++|++++.++++++.
T Consensus       117 ~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~~~-~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~  194 (319)
T cd08242         117 TLPLENLHVVPDLVPDEQAVFA-EPLAAALEILE-QVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLAL  194 (319)
T ss_pred             EechHHeEECcCCCCHHHhhhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence            4677889999999999888753 44456666654 455799999999998999999999999999999999888877766


Q ss_pred             HHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEe
Q 027664           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSL  161 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  161 (220)
                      + +++|++.++++.+.    .-.+++|++|||+|+...+..+.++++++|+++..+.......++...+..++.++.+..
T Consensus       195 ~-~~~g~~~~~~~~~~----~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~  269 (319)
T cd08242         195 A-RRLGVETVLPDEAE----SEGGGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSR  269 (319)
T ss_pred             H-HHcCCcEEeCcccc----ccCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCccCHHHheecceEEEEEe
Confidence            6 56999888776432    111379999999998657888999999999999877655555666666778888888876


Q ss_pred             cCCHHHHHHHHHHHHcCCCc--cce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          162 IGGLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       162 ~~~~~~~~~~~~~i~~g~i~--~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ...   ++.+++++++|+++  +.+ +.|+++++++|++.+.++. .+|+|+++
T Consensus       270 ~~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~k~vi~~  319 (319)
T cd08242         270 CGP---FAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPG-ALKVLLRP  319 (319)
T ss_pred             ccc---HHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCC-ceEEEeCC
Confidence            543   77888999999995  335 8999999999999998776 48998863

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.92  E-value=5.7e-24  Score=169.53  Aligned_cols=206  Identities=17%  Similarity=0.253  Sum_probs=162.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCC-----CCEEEEEcc-chhHHHHHHHHHHC-CCeEEEEeC
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKP-----GMHVGVVGL-GGLGHVAVKFAKAM-GVKVTVIST   74 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~vlI~G~-g~~G~~~~~la~~~-g~~vi~~~~   74 (220)
                      .++++.++++|+++++++++++++.+.|||+++....++++     |++|||+|+ |++|++++|+|++. |++|++++.
T Consensus       103 ~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~  182 (336)
T TIGR02817       103 LVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATAS  182 (336)
T ss_pred             EEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcC
Confidence            56778899999999999999999999999999977766776     999999996 99999999999998 999999999


Q ss_pred             CccchHHHHHHcCCCEEEcCCC--HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhh
Q 027664           75 SPSKKSEAVERLGADSFLVSRD--QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  151 (220)
                      ++++.+.+ +++|+++++++..  ...+++..+ ++|+++|++++.......+++++++|+++.++..   ..++...+.
T Consensus       183 ~~~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~---~~~~~~~~~  258 (336)
T TIGR02817       183 RPESQEWV-LELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDP---AELDISPFK  258 (336)
T ss_pred             cHHHHHHH-HHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEccc---ccccchhhh
Confidence            88877666 7899999987544  233444433 7999999987655788999999999999988532   233444444


Q ss_pred             cCCeEEEEEecC-----C-------HHHHHHHHHHHHcCCCccce-EEe---ecccHHHHHHHHHcCCCceeEEEE
Q 027664          152 TGRKIVGGSLIG-----G-------LKETQEMIDFAAKHNIRADI-EVI---PADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~~~~~~~~-----~-------~~~~~~~~~~i~~g~i~~~~-~~~---~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++.++.+....     .       ...++.+++++.+|.+++.+ +.+   +++++++|++.+.+++..||+++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       259 RKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             hcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence            455555542221     0       13468889999999988765 455   468999999999998888998874

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.92  E-value=8.8e-24  Score=167.06  Aligned_cols=207  Identities=22%  Similarity=0.253  Sum_probs=166.7

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .+++..++++|+++++++++++++.+.+||+++.....+++|++|+|+|+ |++|++++|+|++.|++|+.++.++++++
T Consensus       102 ~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~  181 (320)
T cd08243         102 LVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAA  181 (320)
T ss_pred             EcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            46778899999999999999999999999999988877899999999997 99999999999999999999999987776


Q ss_pred             HHHHHcCCCEEEcCCC--HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCC---CCchhh--hcC
Q 027664           81 EAVERLGADSFLVSRD--QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLE---LPAFPL--LTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~---~~~~~~--~~~  153 (220)
                      .+ +.+|++++++...  .+.+.+..+++|+++||+|+. .+..++++++++|+++.+|.......   ......  +.+
T Consensus       182 ~~-~~~g~~~~~~~~~~~~~~i~~~~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~  259 (320)
T cd08243         182 LL-KELGADEVVIDDGAIAEQLRAAPGGFDKVLELVGTA-TLKDSLRHLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGV  259 (320)
T ss_pred             HH-HhcCCcEEEecCccHHHHHHHhCCCceEEEECCChH-HHHHHHHHhccCCEEEEEccCCCCcccCCcchhhhhhhcc
Confidence            66 7799988875432  223444434899999999986 68899999999999999987543211   122222  256


Q ss_pred             CeEEEEEecCC--HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          154 RKIVGGSLIGG--LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       154 ~~~~~~~~~~~--~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      +.++.+.....  ...++.+++++.++.+++.+ +.|+++++++|++.+.+++..+|+|+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         260 NLTLTGSSSGDVPQTPLQELFDFVAAGHLDIPPSKVFTFDEIVEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             ceEEEecchhhhhHHHHHHHHHHHHCCceecccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence            67777665433  24578888999999988655 78999999999999998887788875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.92  E-value=1.9e-23  Score=167.53  Aligned_cols=204  Identities=18%  Similarity=0.209  Sum_probs=161.2

Q ss_pred             cccc-ceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            3 ADEH-FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         3 v~~~-~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      ++++ .++++|+++++++++.+ ..+.++|+++ ....+++|++|+|.|+|.+|++++++|+++|++ ++++++++++. 
T Consensus       136 ~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-  212 (350)
T cd08256         136 FPKEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERL-  212 (350)
T ss_pred             cccccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHH-
Confidence            4555 57899999999999988 8889999998 445689999999977799999999999999995 55666666555 


Q ss_pred             HHHHHcCCCEEEcCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhh-hcCC
Q 027664           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL-LTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~  154 (220)
                      .+.+++|++.++++.+.   +.+.+.++  ++|++|||+|....+..++++++++|+++.+|......+++...+ ..++
T Consensus       213 ~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  292 (350)
T cd08256         213 ALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSIIGDRKE  292 (350)
T ss_pred             HHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccChhHhhcccc
Confidence            55578999988887653   34445443  699999999965468889999999999999987654444443333 3567


Q ss_pred             eEEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          155 KIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      +++.++.... ..+.++++++++|.+++.  + +.|+++++++|++.+++++..+|+++
T Consensus       293 ~~i~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         293 LDVLGSHLGP-YCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             cEEEEeccCc-hhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence            7787776543 468889999999999873  4 89999999999999998887788874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.92  E-value=1.1e-23  Score=168.31  Aligned_cols=200  Identities=21%  Similarity=0.305  Sum_probs=165.5

Q ss_pred             eEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchHHHHHHc
Q 027664            8 VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKSEAVERL   86 (220)
Q Consensus         8 ~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~~~~~~~   86 (220)
                      ++++|+++++.+++.+ ..+.+||+++... .+++|++|+|+|+|.+|.+++|+|+..|++ +++++.++++.+.+ +.+
T Consensus       133 ~~~lP~~~~~~~aa~~-~~~~~a~~~l~~~-~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~-~~~  209 (343)
T cd08235         133 VLKLPDNVSFEEAALV-EPLACCINAQRKA-GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFA-KKL  209 (343)
T ss_pred             EEECCCCCCHHHHHhh-hHHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHh
Confidence            9999999999999865 7889999999766 689999999998899999999999999998 88888887777666 678


Q ss_pred             CCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC--CCCCchhhhcCCeEEEE
Q 027664           87 GADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--LELPAFPLLTGRKIVGG  159 (220)
Q Consensus        87 g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~~~~~~~  159 (220)
                      |.++++++.+.+   .+.+..+  ++|++|||++....+...+++++++|+++.+|.....  ..++......++..+.+
T Consensus       210 g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~  289 (343)
T cd08235         210 GADYTIDAAEEDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITG  289 (343)
T ss_pred             CCcEEecCCccCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEE
Confidence            999988877643   3444443  6999999999765688899999999999999865432  34444556678888888


Q ss_pred             EecCCHHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          160 SLIGGLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      ........++.++++++++.+.+  .+ ..|++++++++++.+.+++ .+|+|+.
T Consensus       290 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi~  343 (343)
T cd08235         290 SYAASPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVIT  343 (343)
T ss_pred             EecCChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEeC
Confidence            87777778899999999999874  24 7899999999999999988 8999863

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.92  E-value=1.2e-23  Score=166.78  Aligned_cols=209  Identities=22%  Similarity=0.246  Sum_probs=163.5

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCC--C-CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD--K-PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~--~-~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      .++++.++++|+++++++++++++.+.++|+++......  . .+++|+|+|+ |++|++++++|+..|++|++++.+++
T Consensus       103 ~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~  182 (325)
T cd05280         103 RVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEE  182 (325)
T ss_pred             EEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            467889999999999999999999999999998765432  4 3579999997 99999999999999999999999988


Q ss_pred             chHHHHHHcCCCEEEcCCCHH--HHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcC
Q 027664           78 KKSEAVERLGADSFLVSRDQD--EMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTG  153 (220)
Q Consensus        78 ~~~~~~~~~g~~~~~~~~~~~--~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~  153 (220)
                      +++.+ +.+|++++++..+..  ..+... +++|++|||+|.. .+..++++++++|+++.+|.... +..++...++.+
T Consensus       183 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~  260 (325)
T cd05280         183 QADYL-KSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGD-VLANLLKQTKYGGVVASCGNAAGPELTTTVLPFILR  260 (325)
T ss_pred             HHHHH-HhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchH-HHHHHHHhhcCCCEEEEEecCCCCccccccchheee
Confidence            77766 679999988866532  222233 3799999999986 68999999999999999987543 234455555578


Q ss_pred             CeEEEEEecCC--H----HHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          154 RKIVGGSLIGG--L----KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~~~~~~~~~--~----~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +.++.+.....  .    ..++.+.+++.++...+...+|++++++++++.+.+++..||+|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         261 GVSLLGIDSVNCPMELRKQVWQKLATEWKPDLLEIVVREISLEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             eeEEEEEEeecCchhHHHHHHHHHHHHHhcCCccceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence            88888765432  1    22344555556664433338999999999999999998889999863

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.92  E-value=1.9e-23  Score=167.04  Aligned_cols=202  Identities=19%  Similarity=0.268  Sum_probs=164.0

Q ss_pred             cceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHH
Q 027664            6 HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE   84 (220)
Q Consensus         6 ~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~   84 (220)
                      ..++++|+++++++++++++.+.|||+++.. ..+.++++|+|+|+|++|++++++|+.+|+ ++++++.++++... .+
T Consensus       132 ~~~~~~p~~l~~~~a~~l~~~~~ta~~~~~~-~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~-~~  209 (344)
T cd08284         132 GTLLKLPDGLSDEAALLLGDILPTGYFGAKR-AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLER-AA  209 (344)
T ss_pred             CceEECCCCCCHHHhhhhcCchHHHHhhhHh-cCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHH-HH
Confidence            4999999999999999999999999999976 457899999999889999999999999997 88888666665544 46


Q ss_pred             HcCCCEEEcCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCCeEEE
Q 027664           85 RLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGRKIVG  158 (220)
Q Consensus        85 ~~g~~~~~~~~~~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~  158 (220)
                      ++|+. .++....   ..+.+..+  ++|++|||+|....+...+++++++|+++.+|.... .........+.++.++.
T Consensus       210 ~~g~~-~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~  288 (344)
T cd08284         210 ALGAE-PINFEDAEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLR  288 (344)
T ss_pred             HhCCe-EEecCCcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEE
Confidence            78875 3555442   33444443  799999999976578899999999999999997653 23445556677888887


Q ss_pred             EEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          159 GSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      +......+.++.+++++.++.+.+.  + ++|++++++++++.+.+++. +|+|+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~Vi~  343 (344)
T cd08284         289 FGRCPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKV-LKVVLD  343 (344)
T ss_pred             EecCCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCc-eEEEec
Confidence            6655556788999999999998852  4 78999999999999988777 999875

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.92  E-value=1.4e-23  Score=166.84  Aligned_cols=201  Identities=29%  Similarity=0.384  Sum_probs=166.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      .++.+.++++|+++++.+++.+++.+.|||+++ ...+++++++++|+|+|++|+++++++++.|++|++++.++++++.
T Consensus       128 ~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~  206 (329)
T cd08298         128 VADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQEL  206 (329)
T ss_pred             EecchhEEECCCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHH
Confidence            467788999999999999999999999999999 5666899999999999999999999999999999999999877766


Q ss_pred             HHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCCeEEEEE
Q 027664           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRKIVGGS  160 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~  160 (220)
                      + +.+|++.+++....     ..+++|+++++.+....+...+++++++|+++.+|..... ..++.. .+.++..+.++
T Consensus       207 ~-~~~g~~~~~~~~~~-----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~i~~~  279 (329)
T cd08298         207 A-RELGADWAGDSDDL-----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYE-LLWGEKTIRSV  279 (329)
T ss_pred             H-HHhCCcEEeccCcc-----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchh-hhhCceEEEEe
Confidence            6 78999887766432     1237999999977666789999999999999998854322 122222 24567778777


Q ss_pred             ecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEE
Q 027664          161 LIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       161 ~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      .......++.++++++++.+++.++.|+++++++|++.+++++..||+|+
T Consensus       280 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         280 ANLTRQDGEEFLKLAAEIPIKPEVETYPLEEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             cCCCHHHHHHHHHHHHcCCCCceEEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence            77777788999999999998875689999999999999999888888874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.92  E-value=1.7e-23  Score=168.56  Aligned_cols=207  Identities=23%  Similarity=0.360  Sum_probs=169.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++.+++.+.+||.++.....+.++++++|+|+|++|++++++|+..|++ |++++.++++.+
T Consensus       142 ~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~  221 (363)
T cd08279         142 VVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLE  221 (363)
T ss_pred             EeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence            4677899999999999999999999999999987777789999999998899999999999999995 888888887766


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhhcC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~  153 (220)
                      .+ +.+|++++++....+   .+.+..  +++|+++||+++...+...+++++++|+++.+|....  ...++...+..+
T Consensus       222 ~~-~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  300 (363)
T cd08279         222 LA-RRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLS  300 (363)
T ss_pred             HH-HHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhc
Confidence            55 789999988876533   344444  3799999999976578899999999999999986542  355666666667


Q ss_pred             CeEEEEEec---CCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEE
Q 027664          154 RKIVGGSLI---GGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFV  209 (220)
Q Consensus       154 ~~~~~~~~~---~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~v  209 (220)
                      +..+.+++.   ...+.++++++++.++.+.+.  + ++|+++++++|++.+.+++..+.++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         301 EKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             CcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            777777654   235778899999999999863  4 7899999999999998887654443

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.92  E-value=8e-24  Score=167.95  Aligned_cols=209  Identities=20%  Similarity=0.273  Sum_probs=160.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcC---CCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL---DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~---~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      .++++.++++|+++++++++.+++.+.||+.++.....   ...+++|+|+|+ |++|++++|+|+++|++|++++++++
T Consensus       103 ~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~  182 (326)
T cd08289         103 RVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKAD  182 (326)
T ss_pred             EEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHH
Confidence            46778999999999999999999999999988764322   345789999998 99999999999999999999999988


Q ss_pred             chHHHHHHcCCCEEEcCCCH--HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcC
Q 027664           78 KKSEAVERLGADSFLVSRDQ--DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTG  153 (220)
Q Consensus        78 ~~~~~~~~~g~~~~~~~~~~--~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~  153 (220)
                      +++.+ +++|++.+++..+.  +.+.+..+ ++|++|||+|+. .+...+++++++|+++.+|.... ..+++...++.+
T Consensus       183 ~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~  260 (326)
T cd08289         183 AADYL-KKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGK-TLAYLLSTLQYGGSVAVSGLTGGGEVETTVFPFILR  260 (326)
T ss_pred             HHHHH-HHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHH-HHHHHHHHhhcCCEEEEEeecCCCCCCcchhhhhhc
Confidence            87766 77999888887653  23333433 799999999985 68999999999999999997643 234445566688


Q ss_pred             CeEEEEEecCC--HHHHHHHHHHHHc----CCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          154 RKIVGGSLIGG--LKETQEMIDFAAK----HNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~~~~~~~~~--~~~~~~~~~~i~~----g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +.++.+.....  .......+..+..    +.+...+ ++|+++++++|++.+.+++..+|+++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         261 GVNLLGIDSVECPMELRRRIWRRLATDLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             cceEEEEEeEecCchHHHHHHHHHHhhcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence            88888874321  1222223332221    2222334 8999999999999999998889999863

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.92  E-value=2.2e-23  Score=168.27  Aligned_cols=207  Identities=22%  Similarity=0.354  Sum_probs=163.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      +++++.++++|+++++++++++++.+.++|+++.....+++|++|+|+|+|++|++++++|++.|+ +|+++++++++++
T Consensus       150 ~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~  229 (373)
T cd08299         150 VVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFA  229 (373)
T ss_pred             EecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            568889999999999999999999999999987666668999999999989999999999999999 8999998888777


Q ss_pred             HHHHHcCCCEEEcCCCH-----HHHHHhc-CCccEEEEcCCCcccHHHHHhcc-ccCCEEEEeCCCCCC--CCCCchhhh
Q 027664           81 EAVERLGADSFLVSRDQ-----DEMQAAM-GTMDGIIDTVSAVHPLMPLIGLL-KSQGKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~-----~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +.+|++++++..+.     +.+.+.+ +++|+++||+|.+..+..++..+ +.+|+++.+|.....  .++.... +
T Consensus       230 ~a-~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~-~  307 (373)
T cd08299         230 KA-KELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPML-L  307 (373)
T ss_pred             HH-HHcCCceEecccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHHH-H
Confidence            66 78999999887542     2233443 37999999999765677766655 579999999976532  3333332 3


Q ss_pred             cCCeEEEEEecCC---HHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          152 TGRKIVGGSLIGG---LKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~~~~~~~~~---~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++.++.+++...   ..++.++++.+.++.+++  .+ ++|+++++++|++.+++++. .|+++.
T Consensus       308 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~~~~  372 (373)
T cd08299         308 LTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRTVLT  372 (373)
T ss_pred             hcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceEEEe
Confidence            4667888876643   256777777777776553  34 89999999999999887764 577775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=3.8e-23  Score=164.54  Aligned_cols=208  Identities=30%  Similarity=0.387  Sum_probs=176.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      .++.+.++++|+++++.+++.+++.+.+||+++.....+++|++++|+|+|++|+++++++++.|++|++++.++++++.
T Consensus       120 ~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~  199 (336)
T cd08276         120 VLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLER  199 (336)
T ss_pred             EecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            35678899999999999999999999999999988777899999999988999999999999999999999988877776


Q ss_pred             HHHHcCCCEEEcCCC-H---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCC
Q 027664           82 AVERLGADSFLVSRD-Q---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR  154 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~-~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      + +.+|.+.+++... .   +.+.+..+  ++|+++|+++.. ....++++++++|+++.+|..... ........+.++
T Consensus       200 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  277 (336)
T cd08276         200 A-KALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGPG-TLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKG  277 (336)
T ss_pred             H-HHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEECCChH-HHHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcc
Confidence            6 4589888887654 2   23445543  799999999866 688999999999999999875543 345566778899


Q ss_pred             eEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          155 KIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++.+........++.+++++.++.+.+.. +.+++++++++++.+.+++..+|++++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  335 (336)
T cd08276         278 ATLRGIAVGSRAQFEAMNRAIEAHRIRPVIDRVFPFEEAKEAYRYLESGSHFGKVVIR  335 (336)
T ss_pred             eEEEEEecCcHHHHHHHHHHHHcCCcccccCcEEeHHHHHHHHHHHHhCCCCceEEEe
Confidence            999998877777889999999999887655 899999999999999988878899875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.92  E-value=1.4e-23  Score=166.75  Aligned_cols=208  Identities=25%  Similarity=0.264  Sum_probs=166.5

Q ss_pred             cccc-cceEeCCCCCC--cccccc-ccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc
Q 027664            2 VADE-HFVVRIPEGAP--LDATAP-LLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus         2 ~v~~-~~~~~ip~~~s--~~~aa~-~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      .++. +.++++|++++  +.++++ +++.+.|||+++.....+.++++|+|+|+ |++|++++|+|+..|++|+++++++
T Consensus       101 ~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~  180 (329)
T cd05288         101 VVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSD  180 (329)
T ss_pred             EecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4567 88999999995  545555 89999999999987777889999999996 9999999999999999999999888


Q ss_pred             cchHHHHHHcCCCEEEcCCCHHH---HHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCC------CC
Q 027664           77 SKKSEAVERLGADSFLVSRDQDE---MQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLE------LP  146 (220)
Q Consensus        77 ~~~~~~~~~~g~~~~~~~~~~~~---~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~------~~  146 (220)
                      ++.+.+.+.+|++.++++.+.+.   +.+.. +++|++|||+|.. .+..++++++++|+++.+|.......      ++
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  259 (329)
T cd05288         181 EKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGGE-ILDAALTLLNKGGRIALCGAISQYNATEPPGPKN  259 (329)
T ss_pred             HHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcchHH-HHHHHHHhcCCCceEEEEeeccCccccccccccc
Confidence            77776644489988888776432   33333 3799999999986 68899999999999999986543211      23


Q ss_pred             chhhhcCCeEEEEEecCCH-----HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          147 AFPLLTGRKIVGGSLIGGL-----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      ....+.++.++.+......     +.+.++++++.+|.+++.. ..+++++++++++.+.+++..+|+++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         260 LGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDVVEGLENAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             HHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccccccccHHHHHHHHHHHhcCCCccceeC
Confidence            4455678888888765432     4577888999999998765 77899999999999998887788874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.92  E-value=4.8e-23  Score=166.54  Aligned_cols=202  Identities=21%  Similarity=0.192  Sum_probs=161.2

Q ss_pred             ceEeCCCCCCcc---ccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHH
Q 027664            7 FVVRIPEGAPLD---ATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA   82 (220)
Q Consensus         7 ~~~~ip~~~s~~---~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~   82 (220)
                      .++++|++++++   ++++++..+.|+|+++ ....+++|++|+|.|+|++|++++|+|++.|+ +|++++.++++.+.+
T Consensus       139 ~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~  217 (375)
T cd08282         139 NLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLA  217 (375)
T ss_pred             cEEECCCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            899999999998   5678888999999998 45568999999999889999999999999998 788877777665544


Q ss_pred             HHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcc-----------cHHHHHhccccCCEEEEeCCCCC------
Q 027664           83 VERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVH-----------PLMPLIGLLKSQGKLVLLGAPEK------  141 (220)
Q Consensus        83 ~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~-----------~~~~~~~~l~~~G~~v~~g~~~~------  141 (220)
                       +++|++ .+++.+.+   .+.+.++ ++|+++||+|...           .+..++++++++|+++.+|....      
T Consensus       218 -~~~g~~-~v~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~  295 (375)
T cd08282         218 -ESIGAI-PIDFSDGDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAG  295 (375)
T ss_pred             -HHcCCe-EeccCcccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccc
Confidence             689984 45665433   3344443 7999999999762           37889999999999998876431      


Q ss_pred             -------CCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          142 -------PLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       142 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                             ...++...++.++..+.+......+.++.+++++.++.+++.  + ++|+++++++|++.+.+++ .+|+|++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~kvvv~  374 (375)
T cd08282         296 DAAAKQGELSFDFGLLWAKGLSFGTGQAPVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL-ETKVVIK  374 (375)
T ss_pred             cccccCccccccHHHHHhcCcEEEEecCCchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC-ceEEEeC
Confidence                   123455556777777777766556778889999999999873  5 8999999999999999888 8999875


Q ss_pred             e
Q 027664          212 V  212 (220)
Q Consensus       212 ~  212 (220)
                      +
T Consensus       375 ~  375 (375)
T cd08282         375 P  375 (375)
T ss_pred             C
Confidence            3

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.92  E-value=3.3e-23  Score=165.62  Aligned_cols=206  Identities=22%  Similarity=0.333  Sum_probs=164.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++++ ..+.+||+++. ...++++++|+|+|+|.+|.+++|+|+.+|++ ++++++++++.+
T Consensus       121 ~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~  198 (343)
T cd08236         121 SVPARNLIKIPDHVDYEEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLA  198 (343)
T ss_pred             EechHHeEECcCCCCHHHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            4678899999999999999877 67789999987 44578999999998899999999999999996 988888877666


Q ss_pred             HHHHHcCCCEEEcCCCHH--HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCC---CchhhhcC
Q 027664           81 EAVERLGADSFLVSRDQD--EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLEL---PAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~--~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~---~~~~~~~~  153 (220)
                      .+ +.+|++.++++.+..  .+.+..+  ++|++|||+|....+..++++++++|+++.+|...+...+   +...++.+
T Consensus       199 ~l-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  277 (343)
T cd08236         199 VA-RELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRK  277 (343)
T ss_pred             HH-HHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhc
Confidence            55 778998888876543  3333433  5999999998765688999999999999999866543222   23344577


Q ss_pred             CeEEEEEecCC-----HHHHHHHHHHHHcCCCc--cce-EEeecccHHHHHHHHHc-CCCceeEEE
Q 027664          154 RKIVGGSLIGG-----LKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAK-ADVRYRFVI  210 (220)
Q Consensus       154 ~~~~~~~~~~~-----~~~~~~~~~~i~~g~i~--~~~-~~~~~~~~~~a~~~~~~-~~~~gk~vv  210 (220)
                      +.++.++....     .+.++.++++++++.+.  +.+ ..+++++++++++.+.+ +...+|+|+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         278 ELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             CcEEEEEeeccccccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            88888876543     46688899999999986  334 78999999999999998 556678764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.91  E-value=6.6e-23  Score=162.96  Aligned_cols=206  Identities=25%  Similarity=0.346  Sum_probs=168.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++...++++|+++++++++++++.+.+||+++.. ..+.++++++|+|+ |++|++++++++..|++|+.+++++++.+
T Consensus       123 ~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~  201 (332)
T cd08259         123 KVPERSLVKLPDNVSDESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLK  201 (332)
T ss_pred             EechhheEECCCCCCHHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence            46778899999999999999999999999999987 66899999999997 99999999999999999999998877666


Q ss_pred             HHHHHcCCCEEEcCCC-HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCC-CCCchhhhcCCeEEE
Q 027664           81 EAVERLGADSFLVSRD-QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTGRKIVG  158 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~  158 (220)
                      .+ +.++.+.+++..+ .+.+.+.. ++|++++|+|.. ....++++++++|+++.+|...... .+.......++.++.
T Consensus       202 ~~-~~~~~~~~~~~~~~~~~~~~~~-~~d~v~~~~g~~-~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~  278 (332)
T cd08259         202 IL-KELGADYVIDGSKFSEDVKKLG-GADVVIELVGSP-TIEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRII  278 (332)
T ss_pred             HH-HHcCCcEEEecHHHHHHHHhcc-CCCEEEECCChH-HHHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEE
Confidence            55 6788887776543 12222222 799999999987 4888999999999999998765432 223333445677777


Q ss_pred             EEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          159 GSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      +.......+++.+++++.+|.+.+.+ +.|+++++++|++.+.+++..+|++++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         279 GSISATKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             EecCCCHHHHHHHHHHHHcCCCccceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence            77666678899999999999988766 799999999999999988888998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.91  E-value=3.9e-23  Score=164.15  Aligned_cols=207  Identities=21%  Similarity=0.257  Sum_probs=162.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++++.+.++|.++.....+++|++++|+|+ |.+|++++++++.+|++++.++.+++++.
T Consensus       100 ~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~  179 (327)
T PRK10754        100 NVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQ  179 (327)
T ss_pred             EcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            46778899999999999999999999999999887777899999999985 99999999999999999999998888776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +.+|++.+++..+.+   .+.+.++  ++|++|||+|+. .....+++++++|+++.+|..... ..++...+..++
T Consensus       180 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  257 (327)
T PRK10754        180 RA-KKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGKD-TWEASLDCLQRRGLMVSFGNASGPVTGVNLGILNQKG  257 (327)
T ss_pred             HH-HHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcHH-HHHHHHHHhccCCEEEEEccCCCCCCCcCHHHHhccC
Confidence            66 779998888776533   3444444  799999999986 688899999999999999876432 223332222222


Q ss_pred             e------EEEEEecCCH----HHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          155 K------IVGGSLIGGL----KETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~------~~~~~~~~~~----~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .      .+.+.. .+.    ..++.+++++.+|.+.+.  + +.|++++++++++.++++...+|+|+.
T Consensus       258 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  326 (327)
T PRK10754        258 SLYVTRPSLQGYI-TTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLI  326 (327)
T ss_pred             ceEEecceeeccc-CCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence            1      122221 122    234568899999999854  3 899999999999999998888999985

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.91  E-value=1.2e-22  Score=162.51  Aligned_cols=203  Identities=19%  Similarity=0.274  Sum_probs=160.8

Q ss_pred             cceEeCCCCCCccccc-----cccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccch
Q 027664            6 HFVVRIPEGAPLDATA-----PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKK   79 (220)
Q Consensus         6 ~~~~~ip~~~s~~~aa-----~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~   79 (220)
                      +.++++|++++++.+.     ++...+.+|++++.. ..+++|++++|.|+|++|++++|+|++.|++ ++++++++++.
T Consensus       128 ~~~~~lP~~l~~~~~~~~~~~~l~~~~~~a~~~~~~-~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~  206 (345)
T cd08287         128 GTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAAVS-AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQ  206 (345)
T ss_pred             CceEECCCCCChhhhhhhhhHhhhcHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence            3899999999882221     223678889988864 4578999999988899999999999999995 66666666554


Q ss_pred             HHHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCC
Q 027664           80 SEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGR  154 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  154 (220)
                       ++.+.+|++.++++.+.+   .+.+..+  ++|+++||+|+...+..++++++++|+++.+|.......++....+.++
T Consensus       207 -~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~  285 (345)
T cd08287         207 -ALAREFGATDIVAERGEEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRELFFRN  285 (345)
T ss_pred             -HHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCHHHHHhcc
Confidence             455789999999887643   3444443  7999999998766789999999999999999876544455554567889


Q ss_pred             eEEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          155 KIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++.+......+.++++++++.+|.+.+.  + +.++++++++|++.+..+.. .|++++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~k~~~~  344 (345)
T cd08287         286 VGLAGGPAPVRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRA-IKVLLR  344 (345)
T ss_pred             eEEEEecCCcHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCc-eEEEeC
Confidence            99988766666789999999999999863  3 78999999999999887665 499885

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.91  E-value=6.5e-23  Score=162.74  Aligned_cols=198  Identities=24%  Similarity=0.320  Sum_probs=162.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++++++.+.+||+++.. ..+++|++++|+|+ |++|++++++|+++|++|+++++    .+
T Consensus       123 ~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~  197 (325)
T cd08264         123 VVPEKNLFKIPDSISDELAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KD  197 (325)
T ss_pred             EcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH----HH
Confidence            46778899999999999999999999999999876 56899999999997 99999999999999999888763    23


Q ss_pred             HHHHHcCCCEEEcCCCH-HHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC-CCCCCCchhhhcCCeEEE
Q 027664           81 EAVERLGADSFLVSRDQ-DEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KPLELPAFPLLTGRKIVG  158 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~-~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~  158 (220)
                      .+ +.+|++++++..+. +.+++..+++|+++||+|.. .+..++++++++|+++.+|... ....++...+..++.++.
T Consensus       198 ~~-~~~g~~~~~~~~~~~~~l~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~  275 (325)
T cd08264         198 WL-KEFGADEVVDYDEVEEKVKEITKMADVVINSLGSS-FWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISII  275 (325)
T ss_pred             HH-HHhCCCeeecchHHHHHHHHHhCCCCEEEECCCHH-HHHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEE
Confidence            44 67899888876542 33444447899999999985 7899999999999999998742 235566667777888899


Q ss_pred             EEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeE
Q 027664          159 GSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRF  208 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~  208 (220)
                      +...+..+.++.+++++.+.+  ..+ +.|+++++++|++.+.++...+|+
T Consensus       276 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~kv  324 (325)
T cd08264         276 GSTGGTRKELLELVKIAKDLK--VKVWKTFKLEEAKEALKELFSKERDGRI  324 (325)
T ss_pred             EccCCCHHHHHHHHHHHHcCC--ceeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence            988777888999999986444  334 889999999999999887766665

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.91  E-value=3.2e-22  Score=161.22  Aligned_cols=206  Identities=20%  Similarity=0.259  Sum_probs=158.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      .++.+.++++|++++++++++. ....++++++ ....+.++++++|+|+|++|++++|+|++.|++ +++++.++++.+
T Consensus       143 ~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~  220 (364)
T PLN02702        143 VHPADLCFKLPENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLS  220 (364)
T ss_pred             EcchHHeEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            4677889999999999988752 2344577777 444578999999999899999999999999995 666666655544


Q ss_pred             HHHHHcCCCEEEcCCC--H---HHHHHh---c-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhh
Q 027664           81 EAVERLGADSFLVSRD--Q---DEMQAA---M-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~--~---~~~~~~---~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  151 (220)
                       +++.+|++.++++..  .   +.+.++   . +++|++|||+|+...+..++++++++|+++.+|.......+....+.
T Consensus       221 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  299 (364)
T PLN02702        221 -VAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAA  299 (364)
T ss_pred             -HHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCCcccHHHHH
Confidence             557899988776431  1   223333   2 37999999999755789999999999999999865444444566678


Q ss_pred             cCCeEEEEEecCCHHHHHHHHHHHHcCCCcc--ce-EEeec--ccHHHHHHHHHcCCCceeEEEE
Q 027664          152 TGRKIVGGSLIGGLKETQEMIDFAAKHNIRA--DI-EVIPA--DYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~--~~-~~~~~--~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .+++++.+++.. ...++.++++++++.+.+  .+ ++|++  +++++|++.+.+++..+|+++.
T Consensus       300 ~~~~~i~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        300 AREVDVVGVFRY-RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN  363 (364)
T ss_pred             hCccEEEEeccC-hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence            888999887754 457888999999999863  34 77665  7999999999888777999985

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.91  E-value=2.3e-22  Score=163.01  Aligned_cols=206  Identities=20%  Similarity=0.263  Sum_probs=161.2

Q ss_pred             cccccceEeCCCCC-------CccccccccchhhhhhhHHHhh-cCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEE
Q 027664            2 VADEHFVVRIPEGA-------PLDATAPLLCAGITVYSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVI   72 (220)
Q Consensus         2 ~v~~~~~~~ip~~~-------s~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~   72 (220)
                      .++++.++++|+++       +++ +++++..+.+||+++... ..+++|++|+|+|+|++|++++|+|+..|+ +|+++
T Consensus       156 ~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~  234 (384)
T cd08265         156 AVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAF  234 (384)
T ss_pred             EechHHeEECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            46778899999863       444 566778889999998655 568999999999889999999999999999 78888


Q ss_pred             eCCccchHHHHHHcCCCEEEcCCCH------HHHHHhcC--CccEEEEcCCCc-ccHHHHHhccccCCEEEEeCCCCCCC
Q 027664           73 STSPSKKSEAVERLGADSFLVSRDQ------DEMQAAMG--TMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLGAPEKPL  143 (220)
Q Consensus        73 ~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~--~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~~~~~~  143 (220)
                      +.++++ .++++++|++.++++.+.      +.+.+.++  ++|+++||+|.. ..+..++++++++|+++.+|......
T Consensus       235 ~~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~  313 (384)
T cd08265         235 EISEER-RNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTV  313 (384)
T ss_pred             cCCHHH-HHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCC
Confidence            888775 455578999998887632      23444443  799999999963 35788899999999999998755444


Q ss_pred             CCCchhhhcCCeEEEEEecC-CHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          144 ELPAFPLLTGRKIVGGSLIG-GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      .+....+..+..++.+.... ....++++++++++|.+.+.  + +.|+++++++|++.+.++ ..+|+|+
T Consensus       314 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~-~~~kvvv  383 (384)
T cd08265         314 PLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASER-TDGKITI  383 (384)
T ss_pred             cccHHHHhhCceEEEEeeccCCcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcC-CCceEEe
Confidence            44555566677788877642 23468889999999999864  4 789999999999997655 4688875

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.91  E-value=1.8e-22  Score=161.21  Aligned_cols=208  Identities=22%  Similarity=0.212  Sum_probs=158.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCC----------CCCCEEEEEcc-chhHHHHHHHHHHCCCeEE
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD----------KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVT   70 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~----------~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi   70 (220)
                      .++.+.++++|+++++++++++++.+.|||+++.....+          .++++++|+|+ |++|++++++|++.|++|+
T Consensus       104 ~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~  183 (339)
T cd08249         104 VADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVI  183 (339)
T ss_pred             EechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCeEE
Confidence            467788999999999999999999999999998766444          68999999997 9999999999999999998


Q ss_pred             EEeCCccchHHHHHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhcccc--CCEEEEeCCCCCCCC
Q 027664           71 VISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKS--QGKLVLLGAPEKPLE  144 (220)
Q Consensus        71 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~--~G~~v~~g~~~~~~~  144 (220)
                      .++ ++++++.+ +.+|+++++++.+.+   .+++..+ ++|++||++|.+..+..+++++++  +|+++.+|.......
T Consensus       184 ~~~-~~~~~~~~-~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~~  261 (339)
T cd08249         184 TTA-SPKNFDLV-KSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEETE  261 (339)
T ss_pred             EEE-CcccHHHH-HhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCcccc
Confidence            887 45666655 789999998876643   3444433 799999999985578999999999  999999987643221


Q ss_pred             CCchhhhcCCeEEEEEe-------cCCHHHHHHHHHHHHcCCCccce-EEee--cccHHHHHHHHHcCC-CceeEEEEe
Q 027664          145 LPAFPLLTGRKIVGGSL-------IGGLKETQEMIDFAAKHNIRADI-EVIP--ADYVNTAMERLAKAD-VRYRFVIDV  212 (220)
Q Consensus       145 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~g~i~~~~-~~~~--~~~~~~a~~~~~~~~-~~gk~vv~~  212 (220)
                      +. ..............       ......++.++++++++.+.+.. ..++  ++++++|++.+.+++ ..+|+|+++
T Consensus       262 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         262 PR-KGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             CC-CCceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence            11 11111111111110       01124577788999999998765 6777  999999999999888 789999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.90  E-value=2.8e-22  Score=159.69  Aligned_cols=209  Identities=22%  Similarity=0.281  Sum_probs=173.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++++.+.++++++.....+.++++++|+|+ +.+|++++++++..|++++.+++++++.+
T Consensus       126 ~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~  205 (342)
T cd08266         126 AVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLE  205 (342)
T ss_pred             EechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            45677899999999999999999999999999877777889999999997 79999999999999999999998887776


Q ss_pred             HHHHHcCCCEEEcCCCHHH---HHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQDE---MQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~---~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +.++.+.+++..+.+.   +.+..  +++|++++++|.. .+...+++++++|+++.+|..... ...+....+.++
T Consensus       206 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~  283 (342)
T cd08266         206 RA-KELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGAA-TWEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQ  283 (342)
T ss_pred             HH-HHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCcHH-HHHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcc
Confidence            65 5678777777665433   33332  2799999999986 588899999999999999876542 334444557788


Q ss_pred             eEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          155 KIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .++.+........+..++++++++.+.+.+ +.|+++++++|++.+..+...+|+++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  342 (342)
T cd08266         284 LSILGSTMGTKAELDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLTP  342 (342)
T ss_pred             eEEEEEecCCHHHHHHHHHHHHcCCcccceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            899998887778899999999999988766 8999999999999999887779999863

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.90  E-value=2.7e-22  Score=160.28  Aligned_cols=207  Identities=17%  Similarity=0.205  Sum_probs=159.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++.+ ..+.+++++... . ..+|++|+|.|+|++|.+++|+|++.|+ +|++++.++++. 
T Consensus       126 ~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~~~~-~-~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-  201 (341)
T PRK05396        126 VIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHTALS-F-DLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRL-  201 (341)
T ss_pred             EechHHeEECcCCCCHHHhHhh-hHHHHHHHHHHc-C-CCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH-
Confidence            4677889999999999888744 455555555433 2 3689999998889999999999999999 677776666555 


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCe
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRK  155 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      .+++++|++.++++.+.+   .+.++.+  ++|++|||.|....++.++++++++|+++.+|......+++...+..++.
T Consensus       202 ~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  281 (341)
T PRK05396        202 ELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKVIFKGL  281 (341)
T ss_pred             HHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCcccHHHHhhcce
Confidence            445789999998876543   3444443  79999999997667889999999999999998765544555566777888


Q ss_pred             EEEEEecCC-HHHHHHHHHHHHcC-CCccce-EEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          156 IVGGSLIGG-LKETQEMIDFAAKH-NIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       156 ~~~~~~~~~-~~~~~~~~~~i~~g-~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      ++.++.... ...+..+++++.++ ++.+.+ +.++++++++|++.+.++. .||++++++
T Consensus       282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-~gk~vv~~~  341 (341)
T PRK05396        282 TIKGIYGREMFETWYKMSALLQSGLDLSPIITHRFPIDDFQKGFEAMRSGQ-SGKVILDWD  341 (341)
T ss_pred             EEEEEEccCccchHHHHHHHHHcCCChhHheEEEEeHHHHHHHHHHHhcCC-CceEEEecC
Confidence            888765322 24456788888888 444445 8999999999999998877 799999764

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.90  E-value=3.6e-22  Score=157.43  Aligned_cols=209  Identities=25%  Similarity=0.331  Sum_probs=168.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|++++++++++++..+.++++++.....+.+|++|+|+|+ |++|++++++++.+|++|++++.++++.+
T Consensus        96 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~  175 (320)
T cd05286          96 VVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAE  175 (320)
T ss_pred             EecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            46678899999999999999999999999999887777899999999996 99999999999999999999998888777


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +.+|++.+++..+.+   .+....+  ++|+++||+|+. ....++++++++|+++.+|..... ..++...+..++
T Consensus       176 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  253 (320)
T cd05286         176 LA-RAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGKD-TFEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGS  253 (320)
T ss_pred             HH-HHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCcH-hHHHHHHhhccCcEEEEEecCCCCCCccCHHHHHhcC
Confidence            66 679998888766533   3444443  799999999986 688999999999999999875433 234444444677


Q ss_pred             eEEEEEec----CCH----HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          155 KIVGGSLI----GGL----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~~~~~~~----~~~----~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .++.+...    ...    +.+..+++++.++.+.+.+ +.|++++++++++.+..+...+|+++.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~  320 (320)
T cd05286         254 LFLTRPSLFHYIATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQAHRDLESRKTTGKLLLIP  320 (320)
T ss_pred             cEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCcccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            77765432    112    2345678888899888666 7899999999999999888888998753

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.90  E-value=4e-22  Score=158.89  Aligned_cols=207  Identities=19%  Similarity=0.259  Sum_probs=165.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCC-----CCEEEEEcc-chhHHHHHHHHHHCC-CeEEEEeC
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKP-----GMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVIST   74 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~vlI~G~-g~~G~~~~~la~~~g-~~vi~~~~   74 (220)
                      .++.+.++++|+++++++++.+++.+.++|+++.....+.+     |++|+|+|+ |++|++++++|+..| ++|++++.
T Consensus       104 ~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~  183 (336)
T cd08252         104 LVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATAS  183 (336)
T ss_pred             EEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcC
Confidence            46778899999999999999999999999999876666776     999999996 999999999999999 89999999


Q ss_pred             CccchHHHHHHcCCCEEEcCCCH--HHHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhh
Q 027664           75 SPSKKSEAVERLGADSFLVSRDQ--DEMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  151 (220)
                      ++++.+.+ +.+|++.+++..+.  +.+.... +++|++|||+|....+..++++++++|+++.+|...  ..++...+.
T Consensus       184 ~~~~~~~~-~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--~~~~~~~~~  260 (336)
T cd08252         184 RPESIAWV-KELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--EPLDLGPLK  260 (336)
T ss_pred             ChhhHHHH-HhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--Ccccchhhh
Confidence            88777666 67999888887641  2233333 379999999997557889999999999999998653  334444444


Q ss_pred             cCCeEEEEEecCC------------HHHHHHHHHHHHcCCCccce----EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          152 TGRKIVGGSLIGG------------LKETQEMIDFAAKHNIRADI----EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~~~~~~~~~------------~~~~~~~~~~i~~g~i~~~~----~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++.++.+.....            ...++.+++++.+|.+.+..    ..++++++++|++.+.++...+|++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         261 SKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             cccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence            6677776644321            13477888999999988653    357999999999999988888898863

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.90  E-value=3.3e-22  Score=157.67  Aligned_cols=204  Identities=21%  Similarity=0.289  Sum_probs=161.1

Q ss_pred             cccccceEeCCCCCCcccccccc-chhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccch
Q 027664            2 VADEHFVVRIPEGAPLDATAPLL-CAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKK   79 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~-~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~   79 (220)
                      .++++.++++|+++  .. ++++ ..+.++++++. ...++++++++|+|+|.+|.+++++|++.|++ ++++.++++++
T Consensus        92 ~v~~~~~~~lP~~~--~~-~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~  167 (312)
T cd08269          92 LADADHAVPLPSLL--DG-QAFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARL  167 (312)
T ss_pred             EEchhheEECCCch--hh-hHHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH
Confidence            46788999999998  23 3344 77788998887 55689999999998899999999999999998 98888887666


Q ss_pred             HHHHHHcCCCEEEcCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcC
Q 027664           80 SEAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTG  153 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~  153 (220)
                      + +.+.+|++.+++....   +.+.+...  ++|+++||+|........+++++++|+++.+|.... ...+++..+..+
T Consensus       168 ~-~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~  246 (312)
T cd08269         168 A-LARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNWK  246 (312)
T ss_pred             H-HHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCHHHHhhc
Confidence            5 5578999888876543   33444443  799999999876568889999999999999986542 244555566778


Q ss_pred             CeEEEEEecCC----HHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCC-ceeEEE
Q 027664          154 RKIVGGSLIGG----LKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADV-RYRFVI  210 (220)
Q Consensus       154 ~~~~~~~~~~~----~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~-~gk~vv  210 (220)
                      +..+.++....    .+.++.++++++++.+.+  .+ +.|++++++++++.+.+++. ++|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         247 GIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI  311 (312)
T ss_pred             CCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence            88877765433    257888999999999886  24 78999999999999998865 588876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.90  E-value=5.6e-22  Score=157.26  Aligned_cols=209  Identities=22%  Similarity=0.234  Sum_probs=164.5

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHH---hhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR---FYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      .++.+.++++|++++++++++++..+++++.++.   .....+++++++|+|+ |++|++++|+|+++|++|++++.+++
T Consensus       103 ~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~  182 (324)
T cd08288         103 RVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPE  182 (324)
T ss_pred             EEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4677889999999999999999999999987764   3443236789999997 99999999999999999999998888


Q ss_pred             chHHHHHHcCCCEEEcCCCHH-HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCC
Q 027664           78 KKSEAVERLGADSFLVSRDQD-EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGR  154 (220)
Q Consensus        78 ~~~~~~~~~g~~~~~~~~~~~-~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      +++.+ +++|+++++++.+.. .+..... ++|.++|++++. .+..++..++.+|+++.+|.... ...++...++.++
T Consensus       183 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~  260 (324)
T cd08288         183 EADYL-RSLGASEIIDRAELSEPGRPLQKERWAGAVDTVGGH-TLANVLAQTRYGGAVAACGLAGGADLPTTVMPFILRG  260 (324)
T ss_pred             HHHHH-HhcCCCEEEEcchhhHhhhhhccCcccEEEECCcHH-HHHHHHHHhcCCCEEEEEEecCCCCCCcchhhhhccc
Confidence            77666 789999999876533 2333433 689999999975 57788888999999999987532 2334444555788


Q ss_pred             eEEEEEecCC------HHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          155 KIVGGSLIGG------LKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~~~~~~~~~------~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .++.+.....      .+.++.+.+++.++.+.+..+.++++++++|++.+.+++..+|+++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         261 VTLLGIDSVMAPIERRRAAWARLARDLDPALLEALTREIPLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             cEEEEEEeecccchhhHHHHHHHHHHHhcCCccccceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence            8888864321      234666777888888876458999999999999999998889999863

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd05281 TDH Threonine dehydrogenase

Probab=99.90  E-value=4.9e-22  Score=158.77  Aligned_cols=206  Identities=18%  Similarity=0.251  Sum_probs=159.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      +++.+.++++|++++++.+ +++..+.++++++.  ...++|++|+|.|+|.+|++++|+|+..|+ +|++++.++++. 
T Consensus       126 ~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~-  201 (341)
T cd05281         126 VVPEENLWKNDKDIPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRL-  201 (341)
T ss_pred             EechHHcEECcCCCCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-
Confidence            5677889999999998544 57777788887765  235789999998889999999999999999 788886666555 


Q ss_pred             HHHHHcCCCEEEcCCCHH--HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCch-hhhcCCe
Q 027664           81 EAVERLGADSFLVSRDQD--EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF-PLLTGRK  155 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~--~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~  155 (220)
                      .+.+++|++++++....+  .+.+..+  ++|++|||+|.......++++++++|+++.+|.......++.. .+..++.
T Consensus       202 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  281 (341)
T cd05281         202 ELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGL  281 (341)
T ss_pred             HHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCcccccchhhhccce
Confidence            454689998888765432  3444443  7999999998766688999999999999999865543333322 3566777


Q ss_pred             EEEEEecCC-HHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          156 IVGGSLIGG-LKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~~~~~~~~~-~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .+.+..... .+.+..+++++.+|.+.+  .+ +.++++++++|++.+.+++ .||+|+++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~~  341 (341)
T cd05281         282 TVQGITGRKMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLYP  341 (341)
T ss_pred             EEEEEecCCcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEecC
Confidence            777765322 356778899999999864  34 7899999999999999988 89999863

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.90  E-value=6.5e-22  Score=158.02  Aligned_cols=206  Identities=16%  Similarity=0.179  Sum_probs=158.7

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      .++++.++++|++++++++ +++..+.++++++  .....+|++++|.|+|++|.+++|+++.+|++ |+++..++++. 
T Consensus       124 ~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~-  199 (340)
T TIGR00692       124 VVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRL-  199 (340)
T ss_pred             EeehHHcEECcCCCChHhh-hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH-
Confidence            4567889999999998654 5778888888876  23367899999988899999999999999996 87775555444 


Q ss_pred             HHHHHcCCCEEEcCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCch-hhhcCC
Q 027664           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF-PLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~  154 (220)
                      .+.+.+|++.++++.+.   +.+.+..+  ++|++|||+|+...+...+++++++|+++.+|.......++.. .+..++
T Consensus       200 ~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  279 (340)
T TIGR00692       200 ELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKG  279 (340)
T ss_pred             HHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCCcccchhhhhhhcc
Confidence            45578999888877653   33444443  7999999998766788999999999999999876433333333 456677


Q ss_pred             eEEEEEecC-CHHHHHHHHHHHHcCCCc--cce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          155 KIVGGSLIG-GLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~~~~~~~~-~~~~~~~~~~~i~~g~i~--~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .++.+.... ..+.+.++++++.+|.++  +.+ +.+++++++++++.+.+++. ||+|+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-gkvvv~~  340 (340)
T TIGR00692       280 LTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQT-GKVILSL  340 (340)
T ss_pred             eEEEEEecCCchhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCC-ceEEEeC
Confidence            777776532 234578899999999987  334 89999999999999988774 9999864

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.90  E-value=1.4e-22  Score=151.60  Aligned_cols=192  Identities=19%  Similarity=0.185  Sum_probs=162.2

Q ss_pred             cccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH
Q 027664           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  100 (220)
                      ++..+++|||..+.+....++|++|+|-|| |.+|+++.|+|+.+|++|+..+.++++...+.+++|.+..+||.++..+
T Consensus       133 ~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~  212 (343)
T KOG1196|consen  133 LLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDL  212 (343)
T ss_pred             ccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccCccCH
Confidence            678899999999999988899999999987 9999999999999999999999999999999889999999999887333


Q ss_pred             HHh-----cCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC---CCC---CCchhhhcCCeEEEEEecCCH----
Q 027664          101 QAA-----MGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK---PLE---LPAFPLLTGRKIVGGSLIGGL----  165 (220)
Q Consensus       101 ~~~-----~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~----  165 (220)
                      .+.     .+|+|+.||-+|+. .++..+..|+..|+++.+|..+.   +.+   -+...++.|++.+.|+...+.    
T Consensus       213 ~~aL~r~~P~GIDiYfeNVGG~-~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~  291 (343)
T KOG1196|consen  213 SAALKRCFPEGIDIYFENVGGK-MLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKY  291 (343)
T ss_pred             HHHHHHhCCCcceEEEeccCcH-HHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhh
Confidence            222     24999999999998 69999999999999999998753   111   122456888999999765432    


Q ss_pred             -HHHHHHHHHHHcCCCccceE-EeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          166 -KETQEMIDFAAKHNIRADIE-VIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       166 -~~~~~~~~~i~~g~i~~~~~-~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                       +.+..+.+++++|+|+..-+ .-.|+..++||.-|.+++..||-++++..
T Consensus       292 ~k~ld~l~~~ikegKI~y~edi~~Glen~P~A~vglf~GkNvGKqiv~va~  342 (343)
T KOG1196|consen  292 PKFLDFLLPYIKEGKITYVEDIADGLENGPSALVGLFHGKNVGKQLVKVAR  342 (343)
T ss_pred             HHHHHHHHHHHhcCceEEehhHHHHHhccHHHHHHHhccCcccceEEEeec
Confidence             44678889999999998753 34599999999999999999999998864

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.90  E-value=5e-22  Score=157.88  Aligned_cols=205  Identities=22%  Similarity=0.283  Sum_probs=163.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|++  +.++++++..+.+||+++.....++++++++|+|+ |.+|++++++++..|++|+++++++++..
T Consensus       101 ~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~  178 (329)
T cd08250         101 VVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAE  178 (329)
T ss_pred             EechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHH
Confidence            4677889999997  45778899999999999988777899999999996 99999999999999999999998887776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-----------CCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-----------LEL  145 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----------~~~  145 (220)
                      .+ +.+|++.+++..+.+   .+.... +++|++|||+|+. ....++++++++|+++.+|.....           ..+
T Consensus       179 ~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~  256 (329)
T cd08250         179 FL-KSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVGGE-MFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATL  256 (329)
T ss_pred             HH-HHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECCcHH-HHHHHHHHhccCCeEEEEecccCCcccCcccccccccc
Confidence            66 679988888765532   233333 3799999999975 688999999999999999875431           111


Q ss_pred             CchhhhcCCeEEEEEecCC-----HHHHHHHHHHHHcCCCccce---EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          146 PAFPLLTGRKIVGGSLIGG-----LKETQEMIDFAAKHNIRADI---EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~g~i~~~~---~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                       ....+.++.++.++....     .+.+..+++++.+|.+.+.+   +.++++++++|++.+.+++..+|++++
T Consensus       257 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         257 -PPKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             -cHHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence             223467788888876542     24567888999999988742   569999999999999988877898863

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.90  E-value=7.7e-22  Score=157.13  Aligned_cols=204  Identities=21%  Similarity=0.254  Sum_probs=162.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++.+ ..+.++++++ ....+++|++++|+|+|.+|.+++++|++.|++ +++++.++++.+
T Consensus       121 ~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~  198 (334)
T cd08234         121 VVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLE  198 (334)
T ss_pred             EecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            4677889999999999998765 7778889888 455689999999998899999999999999997 888888877766


Q ss_pred             HHHHHcCCCEEEcCCCHHHH--HHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhhcCCe
Q 027664           81 EAVERLGADSFLVSRDQDEM--QAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGRK  155 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~--~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~  155 (220)
                      .+ +++|++.++++.+.+..  +... +++|++|||+|.......++++++++|+++.+|....  ..++....+..++.
T Consensus       199 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  277 (334)
T cd08234         199 LA-KKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKEL  277 (334)
T ss_pred             HH-HHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCc
Confidence            55 77898888877654321  2222 3799999999876578889999999999999987543  34455555555778


Q ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          156 IVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      ++.+... ..+.++.+++++.++.+.+.  + .+|++++++++++.+.+ ...+|+|+
T Consensus       278 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi  333 (334)
T cd08234         278 TIIGSFI-NPYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV  333 (334)
T ss_pred             EEEEecc-CHHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence            8877764 34668889999999998753  3 78999999999999998 66789886

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.89  E-value=7.9e-22  Score=155.92  Aligned_cols=209  Identities=25%  Similarity=0.335  Sum_probs=167.5

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++++++.+.+||+++.....+.+|++++|+|+ |++|++++++++..|++|+++++++++.+
T Consensus       104 ~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  183 (325)
T cd08253         104 VVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAE  183 (325)
T ss_pred             EecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            45677899999999999999999999999999988677899999999996 99999999999999999999999887776


Q ss_pred             HHHHHcCCCEEEcCCCHHH---HHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCe
Q 027664           81 EAVERLGADSFLVSRDQDE---MQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRK  155 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~---~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      .+ +.+|++.+++....+.   +.+...  ++|+++||+|.. .....+++++++|+++.+|.......++...++.++.
T Consensus       184 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~  261 (325)
T cd08253         184 LV-RQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANV-NLAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEA  261 (325)
T ss_pred             HH-HHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECCchH-HHHHHHHhhCCCCEEEEEeecCCcCCCChhHHHhcCc
Confidence            66 6789888887765432   333332  799999999987 5788889999999999998754333444445556777


Q ss_pred             EEEEEecCC--H----HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          156 IVGGSLIGG--L----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~~~~~~~~~--~----~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++.+...+.  .    +.++.+.+++.++.+.+.. +.|++++++++++.+.++...+|+++++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  325 (325)
T cd08253         262 SIRGVLLYTATPEERAAAAEAIAAGLADGALRPVIAREYPLEEAAAAHEAVESGGAIGKVVLDP  325 (325)
T ss_pred             eEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            776654332  1    2355566778888887665 7899999999999999888889998753

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.89  E-value=3.6e-22  Score=155.12  Aligned_cols=203  Identities=24%  Similarity=0.328  Sum_probs=155.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++.+ +.+.+||+++.. ..++++++++|+|+|++|++++++|+++|++ |+++++++++..
T Consensus        59 ~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~~~-~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~  136 (277)
T cd08255          59 VVPANLLVPLPDGLPPERAALT-ALAATALNGVRD-AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRE  136 (277)
T ss_pred             EcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHH
Confidence            4677899999999999999988 789999999864 5589999999999899999999999999997 999988887776


Q ss_pred             HHHHHcC-CCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEE
Q 027664           81 EAVERLG-ADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGG  159 (220)
Q Consensus        81 ~~~~~~g-~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  159 (220)
                       .++++| .+.+++..+..   .-.+++|++|||++........+++++++|+++.+|............+..+..++.+
T Consensus       137 -~~~~~g~~~~~~~~~~~~---~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~  212 (277)
T cd08255         137 -LAEALGPADPVAADTADE---IGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRLPIRS  212 (277)
T ss_pred             -HHHHcCCCccccccchhh---hcCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCccccHHHHHhccCeEEe
Confidence             557788 55555432211   0123799999999876678899999999999999987654311111233445556555


Q ss_pred             EecCC------------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcC-CCceeEEE
Q 027664          160 SLIGG------------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKA-DVRYRFVI  210 (220)
Q Consensus       160 ~~~~~------------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~-~~~gk~vv  210 (220)
                      .....            .+.++++++++.++.+.+.+ +.|+++++++|++.+.++ ....|+++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         213 SQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             ecccccccccccccccccccHHHHHHHHHcCCccccccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence            54321            14578899999999988766 889999999999999877 33467653

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.89  E-value=1.4e-21  Score=154.22  Aligned_cols=207  Identities=29%  Similarity=0.347  Sum_probs=167.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++++.++++|++++++++++++..+.++|+++.....+.++++++|+|+ |++|++++++++..|++++++++++++..
T Consensus        99 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~  178 (323)
T cd05276          99 VVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLE  178 (323)
T ss_pred             EcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            45778899999999999999999999999999887777899999999997 99999999999999999999998887776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      .+ +.+|++.+++....+   .+.+..  +++|++||++|+. .....+++++++|+++.+|.... ...++...++.++
T Consensus       179 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~  256 (323)
T cd05276         179 AC-RALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGGD-YLARNLRALAPDGRLVLIGLLGGAKAELDLAPLLRKR  256 (323)
T ss_pred             HH-HHcCCCEEEeCCchhHHHHHHHHhCCCCeEEEEECCchH-HHHHHHHhhccCCEEEEEecCCCCCCCCchHHHHHhC
Confidence            66 678888888776543   233333  2799999999987 47888999999999999987543 2344555556788


Q ss_pred             eEEEEEecCCH----------HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          155 KIVGGSLIGGL----------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       155 ~~~~~~~~~~~----------~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      .++.++.....          ..+.++++++.++.+.+.. +.|++++++++++.+.++...+|+++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         257 LTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRPVIDKVFPLEEAAEAHRRMESNEHIGKIVL  323 (323)
T ss_pred             CeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            88888765432          2246677888899887655 89999999999999998877788763

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>smart00829 PKS_ER Enoylreductase

Probab=99.88  E-value=2.3e-21  Score=150.74  Aligned_cols=206  Identities=24%  Similarity=0.349  Sum_probs=161.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++++.+.++|.++.....+.+|++|+|+|+ |.+|++++++++..|++|+++++++++..
T Consensus        64 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  143 (288)
T smart00829       64 RTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRD  143 (288)
T ss_pred             EccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            46778999999999999999999999999999866667899999999996 99999999999999999999998888777


Q ss_pred             HHHHHcCC--CEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhh
Q 027664           81 EAVERLGA--DSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~--~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|+  +.++++.+.+   .+.+..+  ++|.++|++|+. .....+++++++|+++.+|....  ...++... +
T Consensus       144 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~  220 (288)
T smart00829      144 FL-RELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLAGE-FLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAP-F  220 (288)
T ss_pred             HH-HHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEeCCCHH-HHHHHHHhccCCcEEEEEcCcCCccccccchhh-h
Confidence            66 67897  7777765543   2333333  799999999965 68889999999999999986532  22333333 4


Q ss_pred             cCCeEEEEEecC----C----HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          152 TGRKIVGGSLIG----G----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       152 ~~~~~~~~~~~~----~----~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      .++.++.+....    .    .+.+..+++++.++++.+.. +.|++++++++++.+..+...+|+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv  288 (288)
T smart00829      221 RRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQQGKHIGKVVL  288 (288)
T ss_pred             cCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHhcCCCcceEeC
Confidence            455666554331    1    13466788889899887654 88999999999999998877678763

Enoylreductase in Polyketide synthases.

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.88  E-value=7.7e-21  Score=152.32  Aligned_cols=207  Identities=29%  Similarity=0.335  Sum_probs=158.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCC----CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKP----GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~----~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      .++++.++++|+++++++++.+++.+.++|+++.....+.+    |++++|+|+ |++|+++++++++.|++|+++.++ 
T Consensus       118 ~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-  196 (350)
T cd08248         118 VVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-  196 (350)
T ss_pred             EecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-
Confidence            46778999999999999999999999999999887766654    999999996 999999999999999998888765 


Q ss_pred             cchHHHHHHcCCCEEEcCCCHHHHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC--C--CCC--c-
Q 027664           77 SKKSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--L--ELP--A-  147 (220)
Q Consensus        77 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~--~~~--~-  147 (220)
                      ++ .++.+.+|.+.+++..+.+..+.+.  +++|++|||+|.. ....++++++++|+++.+|.....  .  ...  . 
T Consensus       197 ~~-~~~~~~~g~~~~~~~~~~~~~~~l~~~~~vd~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  274 (350)
T cd08248         197 DA-IPLVKSLGADDVIDYNNEDFEEELTERGKFDVILDTVGGD-TEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGML  274 (350)
T ss_pred             ch-HHHHHHhCCceEEECCChhHHHHHHhcCCCCEEEECCChH-HHHHHHHHhccCCEEEEecCCcccccccccccchhh
Confidence            34 4455788998888876644444433  3799999999987 689999999999999999854311  0  110  0 


Q ss_pred             -h--hhhc-------CCeEE-EEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          148 -F--PLLT-------GRKIV-GGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       148 -~--~~~~-------~~~~~-~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                       .  .+..       +.... .+........+..+++++.+|.+.+.+ +.|++++++++++.+.+++..+|++++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  350 (350)
T cd08248         275 KSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKIKPVIDKVFPFEEVPEAYEKVESGHARGKTVIK  350 (350)
T ss_pred             hhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCEecccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence             0  0110       11111 112223456789999999999987666 899999999999999888777888763

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.88  E-value=5.6e-21  Score=151.27  Aligned_cols=205  Identities=26%  Similarity=0.330  Sum_probs=163.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .+++..++++|+++++.++++++..+.+||+++.....+++|++++|+|+ |++|++++++++..|++|+.++++ ++.+
T Consensus       104 ~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~  182 (326)
T cd08272         104 VVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAA  182 (326)
T ss_pred             EecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHH
Confidence            45678899999999999999999999999999877777899999999996 999999999999999999998887 6666


Q ss_pred             HHHHHcCCCEEEcCCCH--HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeE
Q 027664           81 EAVERLGADSFLVSRDQ--DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKI  156 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~--~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      .+ +.+|.+.+++....  +.+.+...  ++|.++||+|+. .....+++++++|+++.+|... ..  .......++.+
T Consensus       183 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~~~~~-~~--~~~~~~~~~~~  257 (326)
T cd08272         183 FA-RSLGADPIIYYRETVVEYVAEHTGGRGFDVVFDTVGGE-TLDASFEAVALYGRVVSILGGA-TH--DLAPLSFRNAT  257 (326)
T ss_pred             HH-HHcCCCEEEecchhHHHHHHHhcCCCCCcEEEECCChH-HHHHHHHHhccCCEEEEEecCC-cc--chhhHhhhcce
Confidence            55 77999888876543  22333333  699999999986 5888999999999999997653 22  22223356777


Q ss_pred             EEEEecCC-----------HHHHHHHHHHHHcCCCccce--EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          157 VGGSLIGG-----------LKETQEMIDFAAKHNIRADI--EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       157 ~~~~~~~~-----------~~~~~~~~~~i~~g~i~~~~--~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +.+.....           ...+..+++++.++.+.+.+  +.|++++++++++.+.+++..+|+++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         258 YSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             EEEEEcccccccccchhhHHHHHHHHHHHHHCCCcccccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence            76665322           34577788899999887653  8899999999999998887778998863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.88  E-value=7.9e-21  Score=150.29  Aligned_cols=209  Identities=30%  Similarity=0.346  Sum_probs=168.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++...++++|+++++.++++++..+.++|+++.....++++++++|+|+ |++|.+++++++..|++|+++.+++++.+
T Consensus        99 ~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  178 (325)
T TIGR02824        99 AVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCA  178 (325)
T ss_pred             EecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            45677899999999999999999999999999877777899999999996 99999999999999999999998887766


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      .+ +.+|++.+++....+   .+.....  ++|++++|+|.. ....++++++++|+++.+|.... ...++...++.++
T Consensus       179 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  256 (325)
T TIGR02824       179 AC-EALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGS-YLNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKR  256 (325)
T ss_pred             HH-HHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECCchH-HHHHHHHhhccCcEEEEEecCCCCcCCCChHHHHhcC
Confidence            55 778988887765543   2333333  699999999986 68889999999999999987542 2345555556889


Q ss_pred             eEEEEEecCCH----------HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          155 KIVGGSLIGGL----------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~~~~~~~~~~----------~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .++.+......          ..+..+++++.++.+.+.+ +.|++++++++++.+.++...+|+++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  325 (325)
T TIGR02824       257 LTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDAAQAHALMESGDHIGKIVLTV  325 (325)
T ss_pred             CEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccCccccEEeHHHHHHHHHHHHhCCCcceEEEeC
Confidence            89888764331          2245577888899887655 7899999999999999888788998753

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08251 polyketide_synthase polyketide synthase

Probab=99.88  E-value=4.2e-21  Score=150.54  Aligned_cols=205  Identities=20%  Similarity=0.265  Sum_probs=160.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++++.++++|++++++++++++..+.+||+++. ...+++|++++|+|+ |.+|++++|++++.|+++++++.++++++
T Consensus        81 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~-~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  159 (303)
T cd08251          81 TVPEDQVVRKPASLSFEEACALPVVFLTVIDAFA-RAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLE  159 (303)
T ss_pred             EccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHH-hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            4677899999999999999999999999999986 456899999999976 99999999999999999999998887776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhhcC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~  153 (220)
                      .+ +.+|++.+++....+   .+.+..+  ++|.++|++++. .....+++++++|+++.+|....  ...+.... +.+
T Consensus       160 ~~-~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~-~~~  236 (303)
T cd08251         160 YL-KQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSGE-AIQKGLNCLAPGGRYVEIAMTALKSAPSVDLSV-LSN  236 (303)
T ss_pred             HH-HHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcHH-HHHHHHHHhccCcEEEEEeccCCCccCccChhH-hhc
Confidence            66 779998888876533   3444443  799999999875 68889999999999999876532  12233322 222


Q ss_pred             CeEEEEEec-----CCH----HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          154 RKIVGGSLI-----GGL----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       154 ~~~~~~~~~-----~~~----~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      +..+.....     ...    +.+.++++++.+|.+++.. +.|++++++++++.+.+++..+|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         237 NQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             CceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccCCCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            333322221     111    3467788899999988665 88999999999999998888888874

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.88  E-value=6.6e-21  Score=150.55  Aligned_cols=208  Identities=29%  Similarity=0.402  Sum_probs=167.5

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++++...+.+||+++.....+.++++++|+|+ |++|++++++++..|++|+.++.++++.+
T Consensus        99 ~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  178 (323)
T cd08241          99 VVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLA  178 (323)
T ss_pred             EcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHH
Confidence            35677899999999999999999999999999886667899999999997 99999999999999999999999887776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCC-CCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLE-LPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~~  154 (220)
                      .+ +.+|++.+++....+   .+....+  ++|.++||+|.. ....++++++++|+++.+|....... +.....+.++
T Consensus       179 ~~-~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g~~-~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~  256 (323)
T cd08241         179 LA-RALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGD-VFEASLRSLAWGGRLLVIGFASGEIPQIPANLLLLKN  256 (323)
T ss_pred             HH-HHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECccHH-HHHHHHHhhccCCEEEEEccCCCCcCcCCHHHHhhcC
Confidence            66 678888887766533   3444433  799999999985 68889999999999999987543322 3343456678


Q ss_pred             eEEEEEecCC---------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          155 KIVGGSLIGG---------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~~~~~~~~~---------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++.+.....         ...+..+++++.++.+.+.+ +.|++++++++++.+.++...+|++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~  323 (323)
T cd08241         257 ISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRPHVSAVFPLEQAAEALRALADRKATGKVVLT  323 (323)
T ss_pred             cEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcccccceEEcHHHHHHHHHHHHhCCCCCcEEeC
Confidence            8888765432         14567788999999887665 789999999999999888777888763

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.87  E-value=4.5e-21  Score=151.03  Aligned_cols=175  Identities=23%  Similarity=0.271  Sum_probs=143.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeC-CccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST-SPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~-~~~~~~   80 (220)
                      .++++.++++|+++++++++ ++..+.++|+++.....++++++|+|.|+|.+|.+++|+|+..|++|+.+.. +.+.+.
T Consensus       125 ~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~  203 (306)
T cd08258         125 LVPEESLHELPENLSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRL  203 (306)
T ss_pred             EcchHHeEECcCCCCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHH
Confidence            46778999999999999887 7778889999987777789999999988899999999999999999887743 333344


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      .+.+.+|++.+ ++...+   .+.+..+  ++|++|||+|....+...+++++++|+++.+|.... ...++...++.++
T Consensus       204 ~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  282 (306)
T cd08258         204 DVAKELGADAV-NGGEEDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKE  282 (306)
T ss_pred             HHHHHhCCccc-CCCcCCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcC
Confidence            55577898877 665433   3444433  799999999876578889999999999999998652 3566777788899


Q ss_pred             eEEEEEecCCHHHHHHHHHHHHcC
Q 027664          155 KIVGGSLIGGLKETQEMIDFAAKH  178 (220)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~g  178 (220)
                      +++.|++.++.++++.+++++++|
T Consensus       283 ~~i~g~~~~~~~~~~~~~~~~~~~  306 (306)
T cd08258         283 LSVIGSRSSTPASWETALRLLASG  306 (306)
T ss_pred             cEEEEEecCchHhHHHHHHHHhcC
Confidence            999999999999999999998875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.87  E-value=1.1e-20  Score=147.13  Aligned_cols=206  Identities=21%  Similarity=0.282  Sum_probs=161.5

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++.+++.+.+++.++.....+++|++++|+|+ |++|++++++++..|++++.++.++++..
T Consensus        68 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~  147 (293)
T cd05195          68 RVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKRE  147 (293)
T ss_pred             EechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            46778899999999999999999999999999877777899999999985 99999999999999999999999887766


Q ss_pred             HHHHHcC--CCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC--CCCCchhhh
Q 027664           81 EAVERLG--ADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g--~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +.++  ++.+++..+.+   .+.+...  ++|.++||+|+. .++.++++++++|+++.+|.....  ..+.... +
T Consensus       148 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~  224 (293)
T cd05195         148 FL-RELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGE-LLRASWRCLAPFGRFVEIGKRDILSNSKLGMRP-F  224 (293)
T ss_pred             HH-HHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCCCch-HHHHHHHhcccCceEEEeeccccccCCccchhh-h
Confidence            66 4566  67777765543   3444432  799999999988 789999999999999999865432  1222222 3


Q ss_pred             cCCeEEEEEecCC---------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          152 TGRKIVGGSLIGG---------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       152 ~~~~~~~~~~~~~---------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      .++..+.......         .+.+..+.+++.++++.+.. +.+++++++++++.+..++..+|+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         225 LRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             ccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcccCCCeeechhhHHHHHHHHhcCCCCceecC
Confidence            3455555543211         13467788899999988765 78999999999999998887788763

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.87  E-value=1.3e-20  Score=148.89  Aligned_cols=206  Identities=28%  Similarity=0.330  Sum_probs=153.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++.+++.+.+||+++.....+++|++++|+|+ |++|++++++|+..|++|++++.+ ++..
T Consensus       103 ~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~  181 (319)
T cd08267         103 VAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAE  181 (319)
T ss_pred             EechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHH
Confidence            35677899999999999999999999999999988887899999999997 999999999999999999988865 5554


Q ss_pred             HHHHHcCCCEEEcCCCHHHHHHhc--CCccEEEEcCCCc-ccHHHHHhccccCCEEEEeCCCCCCCCCC-----chhhh-
Q 027664           81 EAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLGAPEKPLELP-----AFPLL-  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~--~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-----~~~~~-  151 (220)
                      .+ +.+|.+.+++....+......  +++|+++||+|+. .........++++|+++.+|.........     ..... 
T Consensus       182 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~  260 (319)
T cd08267         182 LV-RSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGG  260 (319)
T ss_pred             HH-HHcCCCEeecCCCCCcchhccCCCCCcEEEECCCchHHHHHHhhhccCCCCEEEEeccccccccccccccchhhccc
Confidence            44 789988888765433222222  2799999999953 12333444599999999998754321111     11111 


Q ss_pred             cCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          152 TGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      .+........ ...+.+..+++++.++.+.+.+ +.|+++++++|++.+.+++..+|+++
T Consensus       261 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~vvv  319 (319)
T cd08267         261 GRRLKFFLAK-PNAEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRLKSGRARGKVVI  319 (319)
T ss_pred             cceEEEEEec-CCHHHHHHHHHHHHCCCeeeeeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence            1222222221 2367788999999999988766 89999999999999998777778763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.87  E-value=1.9e-20  Score=148.89  Aligned_cols=205  Identities=23%  Similarity=0.278  Sum_probs=155.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++++.+.+||+++.....+.+|++++|+|+ |++|++++++++..|++|+.++. +++..
T Consensus        99 ~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~  177 (331)
T cd08273          99 NLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHA  177 (331)
T ss_pred             EechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHH
Confidence            45678899999999999999999999999999988777899999999997 99999999999999999998887 55554


Q ss_pred             HHHHHcCCCEEEcCCCHHHHH-Hhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCC--CC--c-------
Q 027664           81 EAVERLGADSFLVSRDQDEMQ-AAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLE--LP--A-------  147 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~-~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~--~~--~-------  147 (220)
                      .+ +.+|++. ++....+..+ ... +++|.++||+|+.. ...++++++.+|+++.+|.......  ..  +       
T Consensus       178 ~~-~~~g~~~-~~~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~  254 (331)
T cd08273         178 AL-RELGATP-IDYRTKDWLPAMLTPGGVDVVFDGVGGES-YEESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSLLAR  254 (331)
T ss_pred             HH-HHcCCeE-EcCCCcchhhhhccCCCceEEEECCchHH-HHHHHHHhcCCCEEEEEccCCCCCCccccccchhhhhhh
Confidence            44 6788654 4443322221 222 37999999999884 8899999999999999987643211  11  1       


Q ss_pred             -----hhhhcCCeEEEEEecC-------CHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          148 -----FPLLTGRKIVGGSLIG-------GLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       148 -----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                           ...+.+..++.+....       ..+.++.+++++.+|.+.+.+ +.+++++++++++.+.++...||+|+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         255 LAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             hhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence                 0112223333332221       125678889999999998766 89999999999999988887788875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.87  E-value=1.1e-20  Score=148.48  Aligned_cols=202  Identities=26%  Similarity=0.359  Sum_probs=160.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++...++++|+++++.+++.+++.+.++|+++.....+.++++++|+|+ |.+|++++++++..|+++++++.++ +..
T Consensus       104 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~  182 (309)
T cd05289         104 VVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NAD  182 (309)
T ss_pred             EecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHH
Confidence            45677889999999999999999999999999988877899999999997 9999999999999999999888776 554


Q ss_pred             HHHHHcCCCEEEcCCCHHHHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEE
Q 027664           81 EAVERLGADSFLVSRDQDEMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGG  159 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  159 (220)
                      .+ +.+|.+.+++....+..+... +++|.++||+|+. ....++++++++|+++.+|.......    ....++.++..
T Consensus       183 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~----~~~~~~~~~~~  256 (309)
T cd05289         183 FL-RSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGE-TLARSLALVKPGGRLVSIAGPPPAEQ----AAKRRGVRAGF  256 (309)
T ss_pred             HH-HHcCCCEEEeCCCCchhhccCCCCceEEEECCchH-HHHHHHHHHhcCcEEEEEcCCCcchh----hhhhccceEEE
Confidence            44 778988888765533222122 3799999999987 68899999999999999986543211    22344555555


Q ss_pred             EecCC-HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          160 SLIGG-LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       160 ~~~~~-~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                      ..... ...+..++++++++.+.+.+ +.|++++++++++.+..++..+|+++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  309 (309)
T cd05289         257 VFVEPDGEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERLESGHARGKVVL  309 (309)
T ss_pred             EEecccHHHHHHHHHHHHCCCEEEeeccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence            43322 56788899999999987665 89999999999999998877778763

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.86  E-value=2e-20  Score=150.16  Aligned_cols=203  Identities=23%  Similarity=0.245  Sum_probs=151.2

Q ss_pred             ceEeCCCCCCccccccccchhhhhhhHHHhhc-CCCCCCEEEEEcc-chhHHHHHHHHHHC-CC-eEEEEeCCccchHHH
Q 027664            7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYG-LDKPGMHVGVVGL-GGLGHVAVKFAKAM-GV-KVTVISTSPSKKSEA   82 (220)
Q Consensus         7 ~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~vlI~G~-g~~G~~~~~la~~~-g~-~vi~~~~~~~~~~~~   82 (220)
                      .++++|+++++++++.++..+.|||+++.... .+++|++++|+|+ |.+|++++++|+.. |. +++.+.. +++...+
T Consensus       115 ~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~-~~~~~~~  193 (352)
T cd08247         115 SITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCS-SRSAELN  193 (352)
T ss_pred             eeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeC-hhHHHHH
Confidence            68999999999999999999999999998876 6899999999998 79999999999987 55 5666654 4444444


Q ss_pred             HHHcCCCEEEcCCCHH---H----HHHhc--CCccEEEEcCCCcccHHHHHhccc---cCCEEEEeCCCCC-CCC-----
Q 027664           83 VERLGADSFLVSRDQD---E----MQAAM--GTMDGIIDTVSAVHPLMPLIGLLK---SQGKLVLLGAPEK-PLE-----  144 (220)
Q Consensus        83 ~~~~g~~~~~~~~~~~---~----~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~---~~G~~v~~g~~~~-~~~-----  144 (220)
                       +++|++.+++..+.+   .    ++..+  +++|++|||+|+......++++++   ++|+++.++.... ...     
T Consensus       194 -~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~  272 (352)
T cd08247         194 -KKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFN  272 (352)
T ss_pred             -HHhCCCEEEecCCCcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhh
Confidence             789998888865433   1    23333  379999999998546788899999   9999998743221 111     


Q ss_pred             ------CCch----hhhcCCeEEEEEec-CCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          145 ------LPAF----PLLTGRKIVGGSLI-GGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       145 ------~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                            ....    ....+...+..... ...+.++.+++++.+|.+.+.+ +.++++++++|++.+++++..||++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~  351 (352)
T cd08247         273 SWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGKVVIK  351 (352)
T ss_pred             hccccchhhhhhhhhhcCCCcceEEEEecCCHHHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHHcCCCCCcEEEe
Confidence                  0001    11122223332221 1235678889999999988766 899999999999999988888999875

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.86  E-value=3.8e-20  Score=146.59  Aligned_cols=208  Identities=23%  Similarity=0.305  Sum_probs=165.5

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++++.+.++|+++.....+.++++++|+|+ |.+|++++++++..|++++.++.+.++.+
T Consensus       104 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~  183 (328)
T cd08268         104 LVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRD  183 (328)
T ss_pred             EechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            45778899999999999999999999999999987777889999999997 99999999999999999999998887776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +.+|.+.+++....+   .+.+...  ++|++++++|+. ....++++++++|+++.+|..... ..++....+.++
T Consensus       184 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  261 (328)
T cd08268         184 AL-LALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGP-QFAKLADALAPGGTLVVYGALSGEPTPFPLKAALKKS  261 (328)
T ss_pred             HH-HHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCchH-hHHHHHHhhccCCEEEEEEeCCCCCCCCchHHHhhcC
Confidence            66 678888888766533   2333333  799999999986 688899999999999999865432 234444356778


Q ss_pred             eEEEEEecCC----HH----HHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEE
Q 027664          155 KIVGGSLIGG----LK----ETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~~~~~~~~~----~~----~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~  211 (220)
                      .++.+.....    ..    .++.+.+++.++.+.+.. ..|++++++++++.+..++..+|++++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~  327 (328)
T cd08268         262 LTFRGYSLDEITLDPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVEAHRYLESGQQIGKIVVT  327 (328)
T ss_pred             CEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcCCcccEEcHHHHHHHHHHHHcCCCCceEEEe
Confidence            8877765432    22    345556667788887655 789999999999999888877899875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.86  E-value=3.2e-20  Score=147.03  Aligned_cols=208  Identities=25%  Similarity=0.387  Sum_probs=158.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      .++++.++++|+++++.+++++++.+.++++++.....+.+|++++|+|+ |.+|++++++++..|++++++. ++++.+
T Consensus       101 ~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~-~~~~~~  179 (325)
T cd08271         101 VVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFE  179 (325)
T ss_pred             EeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE-cHHHHH
Confidence            45678899999999999999999999999999988877899999999998 8999999999999999988876 555555


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCc--hhhhcC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA--FPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~--~~~~~~  153 (220)
                      .+ +.+|++.+++.....   .+.+..+  ++|.+++|+++. .....+++++++|+++.++..........  .....+
T Consensus       180 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~  257 (325)
T cd08271         180 YV-KSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGE-TAAALAPTLAFNGHLVCIQGRPDASPDPPFTRALSVH  257 (325)
T ss_pred             HH-HHcCCcEEecCCCccHHHHHHHHcCCCCCcEEEECCCcH-hHHHHHHhhccCCEEEEEcCCCCCcchhHHhhcceEE
Confidence            44 678998888766532   3444433  799999999987 46778999999999999875432211111  111223


Q ss_pred             CeEEEEEecCC--------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          154 RKIVGGSLIGG--------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~~~~~~~~~--------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++.+.+.....        .+.+.++++++.++.+.+.. +.|+++++.++++.+.++...+|+++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         258 EVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIEVLPFEQLPEALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             EEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeeccceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence            33333332211        13356788899999887654 8899999999999999888788998763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.86  E-value=3.4e-20  Score=143.12  Aligned_cols=172  Identities=32%  Similarity=0.423  Sum_probs=141.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      .++.+.++++|+++++++++.++..+.+||+++.....+.++++|+|+|+|++|++++++++..|.+|++++.++++.+.
T Consensus        94 ~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~  173 (271)
T cd05188          94 VVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLEL  173 (271)
T ss_pred             EechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence            46778999999999999999999999999999988887789999999998559999999999999999999998877665


Q ss_pred             HHHHcCCCEEEcCCCHHHHHH--h-c-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCC-CchhhhcCCeE
Q 027664           82 AVERLGADSFLVSRDQDEMQA--A-M-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLEL-PAFPLLTGRKI  156 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~~~~~--~-~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~  156 (220)
                      + +.+|.+.+++..+.+....  . . +++|+++|+++.......++++++++|+++.+|........ .....+.++++
T Consensus       174 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~  252 (271)
T cd05188         174 A-KELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELT  252 (271)
T ss_pred             H-HHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceE
Confidence            5 6788888887665433222  2 2 37999999999844688899999999999999876644322 24556889999


Q ss_pred             EEEEecCCHHHHHHHHHH
Q 027664          157 VGGSLIGGLKETQEMIDF  174 (220)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~  174 (220)
                      +.++..+.+.+++.++++
T Consensus       253 ~~~~~~~~~~~~~~~~~~  270 (271)
T cd05188         253 IIGSTGGTREDFEEALDL  270 (271)
T ss_pred             EEEeecCCHHHHHHHHhh
Confidence            999998888888887765

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.85  E-value=2.1e-19  Score=143.00  Aligned_cols=208  Identities=25%  Similarity=0.324  Sum_probs=159.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCccch
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSKK   79 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~-g~~vi~~~~~~~~~   79 (220)
                      .++.+.++++|+++++++++.+++.+.++|+++.....++++++|+|+|+ |.+|++++++++.. +..++.. ..+++.
T Consensus        98 ~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~~~~~~-~~~~~~  176 (337)
T cd08275          98 NVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNVTVVGT-ASASKH  176 (337)
T ss_pred             EecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCcEEEEe-CCHHHH
Confidence            35677899999999999999999999999999887777899999999997 99999999999998 3333322 223344


Q ss_pred             HHHHHHcCCCEEEcCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-------------
Q 027664           80 SEAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-------------  142 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~---~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-------------  142 (220)
                      ..+ +.+|++.+++....   +.+....+ ++|+++||+|+. ....++++++++|+++.+|.....             
T Consensus       177 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  254 (337)
T cd08275         177 EAL-KENGVTHVIDYRTQDYVEEVKKISPEGVDIVLDALGGE-DTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKK  254 (337)
T ss_pred             HHH-HHcCCcEEeeCCCCcHHHHHHHHhCCCceEEEECCcHH-HHHHHHHhhccCcEEEEEeecCCcCcccccccccccc
Confidence            444 67898888876653   23444433 799999999987 578899999999999999865421             


Q ss_pred             ----CCCCchhhhcCCeEEEEEecCC--------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEE
Q 027664          143 ----LELPAFPLLTGRKIVGGSLIGG--------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFV  209 (220)
Q Consensus       143 ----~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~v  209 (220)
                          ..+.....+.++.++.++....        ...+.++++++.++.+.+.. +.|++++++++++.+.+++..+|++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv  334 (337)
T cd08275         255 WWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQSRKNIGKVV  334 (337)
T ss_pred             cccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCceeeEEcHHHHHHHHHHHHcCCCcceEE
Confidence                1122234567788887765421        12366788889999888766 8899999999999999888789998


Q ss_pred             EEe
Q 027664          210 IDV  212 (220)
Q Consensus       210 v~~  212 (220)
                      +++
T Consensus       335 ~~~  337 (337)
T cd08275         335 LTP  337 (337)
T ss_pred             EeC
Confidence            864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.82  E-value=1.1e-19  Score=125.53  Aligned_cols=124  Identities=31%  Similarity=0.484  Sum_probs=109.8

Q ss_pred             hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhcc
Q 027664           53 GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLL  127 (220)
Q Consensus        53 ~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l  127 (220)
                      ++|++++|+|++.|++|++++.++++++.+ +++|+++++++++.+   .++++++  ++|+||||+|....++.++.++
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~-~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l   79 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELA-KELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLL   79 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHH-HHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHH-HhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHh
Confidence            589999999999999999999998776555 789999999998753   5666665  6999999999777899999999


Q ss_pred             ccCCEEEEeCCCC-CCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHc
Q 027664          128 KSQGKLVLLGAPE-KPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK  177 (220)
Q Consensus       128 ~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  177 (220)
                      +++|+++.+|... ...+++...++.+++++.|++.++.++++++++++++
T Consensus        80 ~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~la~  130 (130)
T PF00107_consen   80 RPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQEALQLLAQ  130 (130)
T ss_dssp             EEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHHHHH-
T ss_pred             ccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHHHhcC
Confidence            9999999999988 5578899999999999999999999999999988764

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.69  E-value=6e-16  Score=124.47  Aligned_cols=173  Identities=15%  Similarity=0.074  Sum_probs=134.4

Q ss_pred             hhHHHhh-cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccE
Q 027664           31 YSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        31 ~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~  109 (220)
                      +.++.+. +...+|++|+|+|+|++|+.+++.++.+|++|++++.++.+.+.+ +.+|++.+ +      ..+...++|+
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A-~~~G~~~~-~------~~e~v~~aDV  260 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQA-AMEGYEVM-T------MEEAVKEGDI  260 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHH-HhcCCEEc-c------HHHHHcCCCE
Confidence            4444443 334689999999999999999999999999999998888776655 67888533 2      1223357899


Q ss_pred             EEEcCCCcccHHHH-HhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHH-HHH--HHHHHHHcCCC-ccc-
Q 027664          110 IIDTVSAVHPLMPL-IGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLK-ETQ--EMIDFAAKHNI-RAD-  183 (220)
Q Consensus       110 v~d~~g~~~~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~i~~g~i-~~~-  183 (220)
                      ||+|+|....+... ++.++++|+++.+|..  +.+++...+..+++++.+++.+... +++  ..+.++++|++ +.. 
T Consensus       261 VI~atG~~~~i~~~~l~~mk~GgilvnvG~~--~~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl~~  338 (413)
T cd00401         261 FVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--DVEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLVNLGC  338 (413)
T ss_pred             EEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--CCccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCCCCcc
Confidence            99999988777765 9999999999999954  5678888888899999998876533 455  68999999998 433 


Q ss_pred             -e-EE-----eecc-cHHHHHHHHHcCCCc-eeEEEEeC
Q 027664          184 -I-EV-----IPAD-YVNTAMERLAKADVR-YRFVIDVA  213 (220)
Q Consensus       184 -~-~~-----~~~~-~~~~a~~~~~~~~~~-gk~vv~~~  213 (220)
                       + |.     ++|+ ++.++++.+.++... .|+++.+.
T Consensus       339 ~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~  377 (413)
T cd00401         339 ATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK  377 (413)
T ss_pred             cCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence             3 66     8899 999999999876543 57776664

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.69  E-value=4.1e-17  Score=112.11  Aligned_cols=117  Identities=30%  Similarity=0.420  Sum_probs=78.7

Q ss_pred             cCCCEEEcCCCHHHHHHhcCCccEEEEcCC--CcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecC
Q 027664           86 LGADSFLVSRDQDEMQAAMGTMDGIIDTVS--AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIG  163 (220)
Q Consensus        86 ~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g--~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (220)
                      ||+++++|+++.+.  ...+++|+||||+|  ....+..+.+++ ++|+++.++.     .........+...+......
T Consensus         1 LGAd~vidy~~~~~--~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-----~~~~~~~~~~~~~~~~~~~~   72 (127)
T PF13602_consen    1 LGADEVIDYRDTDF--AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-----DLPSFARRLKGRSIRYSFLF   72 (127)
T ss_dssp             CT-SEEEETTCSHH--HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-----HHHHHHHHHHCHHCEEECCC
T ss_pred             CCcCEEecCCCccc--cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-----cccchhhhhcccceEEEEEE
Confidence            68999999996555  22458999999999  554457777888 9999999974     11111111222222222222


Q ss_pred             -------CHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEE
Q 027664          164 -------GLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       164 -------~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv  210 (220)
                             ..+.++++.+++++|++++.+ ++|||+++++|++.+++++..||+||
T Consensus        73 ~~~~~~~~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   73 SVDPNAIRAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             -H--HHHHHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             ecCCCchHHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence                   234599999999999999999 79999999999999999999999996

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.61  E-value=3.8e-14  Score=116.89  Aligned_cols=142  Identities=20%  Similarity=0.185  Sum_probs=109.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCH-------------HH---HHH-
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQ-------------DE---MQA-  102 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~-------------~~---~~~-  102 (220)
                      .++++|+|+|+|++|+++++.|+.+|++|++++.++++++++ +++|++.+ +|..+.             +.   ..+ 
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a-eslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV-ESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            579999999999999999999999999999999999887766 67999854 554321             11   111 


Q ss_pred             hc---CCccEEEEcCCCcc-----c-HHHHHhccccCCEEEEeCCCC-CC--CCCCchhhhc-CCeEEEEEecCCHHHHH
Q 027664          103 AM---GTMDGIIDTVSAVH-----P-LMPLIGLLKSQGKLVLLGAPE-KP--LELPAFPLLT-GRKIVGGSLIGGLKETQ  169 (220)
Q Consensus       103 ~~---~~~d~v~d~~g~~~-----~-~~~~~~~l~~~G~~v~~g~~~-~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~  169 (220)
                      +.   +++|++|+|+|.+.     . .+++++.++++|+++.+|... +.  .+.+...++. +++++.|.+....+...
T Consensus       242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~p~  321 (509)
T PRK09424        242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRLPT  321 (509)
T ss_pred             HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhHHH
Confidence            12   47999999999642     4 489999999999999999853 33  3444556665 89999998866644445


Q ss_pred             HHHHHHHcCCCccc
Q 027664          170 EMIDFAAKHNIRAD  183 (220)
Q Consensus       170 ~~~~~i~~g~i~~~  183 (220)
                      +..+++.++.++..
T Consensus       322 ~As~lla~~~i~l~  335 (509)
T PRK09424        322 QSSQLYGTNLVNLL  335 (509)
T ss_pred             HHHHHHHhCCccHH
Confidence            68999999887643

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.04  E-value=2.2e-09  Score=83.28  Aligned_cols=166  Identities=19%  Similarity=0.216  Sum_probs=99.5

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHH---cCCCEE-EcCCCHHHHHHh--c-CCccE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVER---LGADSF-LVSRDQDEMQAA--M-GTMDG  109 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~~~~--~-~~~d~  109 (220)
                      .+++|++||.+|+|+ |..+.++++..|.  +|++++.+++..+.+.+.   ++.+.+ +...+   +.++  . +.||+
T Consensus        74 ~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d---~~~l~~~~~~fD~  149 (272)
T PRK11873         74 ELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGE---IEALPVADNSVDV  149 (272)
T ss_pred             cCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcc---hhhCCCCCCceeE
Confidence            468999999999987 8888888888775  699999998876665432   333222 11111   2222  2 37999


Q ss_pred             EEEc-CC-----CcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHc-CCCcc
Q 027664          110 IIDT-VS-----AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK-HNIRA  182 (220)
Q Consensus       110 v~d~-~g-----~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-g~i~~  182 (220)
                      |+.. +.     ....+..+.+.|++||+++..+..... ..  ...+.+...+.+..........++.+++.+ |....
T Consensus       150 Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v  226 (272)
T PRK11873        150 IISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG-EL--PEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI  226 (272)
T ss_pred             EEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC-CC--CHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence            9843 32     123578999999999999987764322 11  111222222222111111234455566665 43333


Q ss_pred             ce---EEeecccHHHHHHHH--HcCCCceeEEEE
Q 027664          183 DI---EVIPADYVNTAMERL--AKADVRYRFVID  211 (220)
Q Consensus       183 ~~---~~~~~~~~~~a~~~~--~~~~~~gk~vv~  211 (220)
                      .+   +.++++++.++++.+  .++...++.+..
T Consensus       227 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  260 (272)
T PRK11873        227 TIQPKREYRIPDAREFLEDWGIAPGRQLDGYIVS  260 (272)
T ss_pred             EEEeccceecccHHHHHHHhccccccccCceEEE
Confidence            33   568899999999988  555544555543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.00  E-value=1.2e-08  Score=82.80  Aligned_cols=107  Identities=17%  Similarity=0.185  Sum_probs=81.1

Q ss_pred             hhhhhHHHhhcCC-CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCC
Q 027664           28 ITVYSPLRFYGLD-KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGT  106 (220)
Q Consensus        28 ~ta~~~l~~~~~~-~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  106 (220)
                      ..+|.++.+...+ ..|++|+|+|.|.+|..+++.++.+|++|++++.++.+..++ ...|++ +.+      +.+...+
T Consensus       196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A-~~~G~~-v~~------l~eal~~  267 (425)
T PRK05476        196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQA-AMDGFR-VMT------MEEAAEL  267 (425)
T ss_pred             hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHH-HhcCCE-ecC------HHHHHhC
Confidence            3345666655333 389999999999999999999999999999999887765554 344654 221      2333458


Q ss_pred             ccEEEEcCCCcccHH-HHHhccccCCEEEEeCCCCCC
Q 027664          107 MDGIIDTVSAVHPLM-PLIGLLKSQGKLVLLGAPEKP  142 (220)
Q Consensus       107 ~d~v~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~  142 (220)
                      +|++|+|+|....+. ..+..+++++.++..|.....
T Consensus       268 aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~E  304 (425)
T PRK05476        268 GDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNE  304 (425)
T ss_pred             CCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCc
Confidence            999999999876665 678899999999999876643

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.96  E-value=6.8e-08  Score=75.60  Aligned_cols=110  Identities=19%  Similarity=0.244  Sum_probs=81.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  121 (220)
                      .+++++|+|.|.+|+.+++.++.+|++|++++++.++..++ +.+|++.+ .   .+.+.+...++|+||+|++......
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~-~~~G~~~~-~---~~~l~~~l~~aDiVI~t~p~~~i~~  225 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARI-TEMGLSPF-H---LSELAEEVGKIDIIFNTIPALVLTK  225 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHcCCeee-c---HHHHHHHhCCCCEEEECCChhhhhH
Confidence            68999999999999999999999999999999997765555 56776533 1   2334455568999999998654446


Q ss_pred             HHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEE
Q 027664          122 PLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVG  158 (220)
Q Consensus       122 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  158 (220)
                      ..++.+++++.++.++...+...+  .....++.+..
T Consensus       226 ~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~  260 (296)
T PRK08306        226 EVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKAL  260 (296)
T ss_pred             HHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEE
Confidence            677889999999999877655444  22233444444

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.95  E-value=2.1e-08  Score=83.02  Aligned_cols=121  Identities=24%  Similarity=0.257  Sum_probs=84.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCC-------------HHH-------
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRD-------------QDE-------   99 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~-------------~~~-------   99 (220)
                      .++++++|+|+|.+|+++++.++.+|++|++++.+.++++.+ +.+|++.+ ++..+             .+.       
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a-~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV-QSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            367899999999999999999999999999999998876666 67998653 33211             111       


Q ss_pred             HHHhcCCccEEEEcC---CCcc---cHHHHHhccccCCEEEEeCCCCCC-CCCC-chhhhc--CCeEEEEEec
Q 027664          100 MQAAMGTMDGIIDTV---SAVH---PLMPLIGLLKSQGKLVLLGAPEKP-LELP-AFPLLT--GRKIVGGSLI  162 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~---g~~~---~~~~~~~~l~~~G~~v~~g~~~~~-~~~~-~~~~~~--~~~~~~~~~~  162 (220)
                      ..+...++|++|+|+   |.+.   ..++.++.+++|+.++.++...+. .+.. +.+.+.  .++.+.+...
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~n  313 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYTD  313 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEEEeeCC
Confidence            112224899999999   6543   467889999999999998876542 2222 112222  3466666544

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN02494 adenosylhomocysteinase

Probab=98.92  E-value=4.7e-08  Score=79.82  Aligned_cols=102  Identities=17%  Similarity=0.158  Sum_probs=77.6

Q ss_pred             hhHHHhhcC-CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccE
Q 027664           31 YSPLRFYGL-DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        31 ~~~l~~~~~-~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~  109 (220)
                      +.++.+... .-.|++++|+|.|.+|..+++.++.+|++|+++..++.+..++ ...|+..+    .   +.+.....|+
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-~~~G~~vv----~---leEal~~ADV  312 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA-LMEGYQVL----T---LEDVVSEADI  312 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-HhcCCeec----c---HHHHHhhCCE
Confidence            444444422 3579999999999999999999999999999998887665444 34566422    1   2233347899


Q ss_pred             EEEcCCCcccH-HHHHhccccCCEEEEeCCCC
Q 027664          110 IIDTVSAVHPL-MPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 v~d~~g~~~~~-~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +++|.|+...+ ...++.|++++.++.+|...
T Consensus       313 VI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~  344 (477)
T PLN02494        313 FVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD  344 (477)
T ss_pred             EEECCCCccchHHHHHhcCCCCCEEEEcCCCC
Confidence            99999987654 78999999999999998754

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.89  E-value=1.1e-07  Score=76.78  Aligned_cols=100  Identities=20%  Similarity=0.244  Sum_probs=76.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCC---C--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVS---A--  116 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g---~--  116 (220)
                      ++.+|+|+|+|.+|+.+++.++.+|++|++++++.++.+.+.+.++........+.+.+.+....+|++|+|++   .  
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~  245 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA  245 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence            34569999999999999999999999999999988777777666665433344445556666678999999983   2  


Q ss_pred             cc-cHHHHHhccccCCEEEEeCCCCC
Q 027664          117 VH-PLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       117 ~~-~~~~~~~~l~~~G~~v~~g~~~~  141 (220)
                      +. .....++.+++++.++.++...+
T Consensus       246 p~lit~~~l~~mk~g~vIvDva~d~G  271 (370)
T TIGR00518       246 PKLVSNSLVAQMKPGAVIVDVAIDQG  271 (370)
T ss_pred             CcCcCHHHHhcCCCCCEEEEEecCCC
Confidence            21 13677888999999999887643

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.81  E-value=2.5e-08  Score=78.68  Aligned_cols=108  Identities=20%  Similarity=0.256  Sum_probs=78.9

Q ss_pred             ceEeCCCCCCccccccccchhhhhhhHHHhhcCC---CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHH
Q 027664            7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD---KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA   82 (220)
Q Consensus         7 ~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~---~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~   82 (220)
                      .++++|+.++.+.+++.. +...++.++......   .++.+|+|+|+|.+|..+++.++..|+ +|+++.++.++...+
T Consensus       140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l  218 (311)
T cd05213         140 KAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL  218 (311)
T ss_pred             HHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            456778888888877544 344555565544321   378999999999999999999988886 888898888877778


Q ss_pred             HHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           83 VERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        83 ~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      ++.+|.. +++.   +.+.+....+|+||.|++.+..
T Consensus       219 a~~~g~~-~~~~---~~~~~~l~~aDvVi~at~~~~~  251 (311)
T cd05213         219 AKELGGN-AVPL---DELLELLNEADVVISATGAPHY  251 (311)
T ss_pred             HHHcCCe-EEeH---HHHHHHHhcCCEEEECCCCCch
Confidence            7888874 3332   2233444578999999998854

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.80  E-value=1.3e-07  Score=76.54  Aligned_cols=102  Identities=22%  Similarity=0.185  Sum_probs=76.6

Q ss_pred             hhHHHhh-cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccE
Q 027664           31 YSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        31 ~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~  109 (220)
                      +.++.+. +....|++|+|+|.|.+|+.+++.++.+|++|++++.++.+..++ ...|+. +.+      +.+...+.|+
T Consensus       182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-~~~G~~-v~~------leeal~~aDV  253 (406)
T TIGR00936       182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-AMDGFR-VMT------MEEAAKIGDI  253 (406)
T ss_pred             HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-HhcCCE-eCC------HHHHHhcCCE
Confidence            3444343 223689999999999999999999999999999998887665444 445653 221      1223357899


Q ss_pred             EEEcCCCcccHHH-HHhccccCCEEEEeCCCC
Q 027664          110 IIDTVSAVHPLMP-LIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 v~d~~g~~~~~~~-~~~~l~~~G~~v~~g~~~  140 (220)
                      +|+++|+...+.. .+..+++++.++.+|...
T Consensus       254 VItaTG~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       254 FITATGNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             EEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence            9999998876664 888999999999998754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.68  E-value=9.4e-08  Score=81.59  Aligned_cols=119  Identities=24%  Similarity=0.255  Sum_probs=75.5

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc---------------------cchHHHHHHcCCCEEEcCCC-H
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP---------------------SKKSEAVERLGADSFLVSRD-Q   97 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~---------------------~~~~~~~~~~g~~~~~~~~~-~   97 (220)
                      .++|++|+|+|+|+.|+++++.++..|++|++++..+                     .+.+ .++++|++..++... .
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~-~~~~~Gv~~~~~~~~~~  212 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQ-RILDLGVEVRLGVRVGE  212 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHH-HHHHCCCEEEeCCEECC
Confidence            5789999999999999999999999999999887532                     1223 345789877766433 2


Q ss_pred             H-HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEE
Q 027664           98 D-EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGS  160 (220)
Q Consensus        98 ~-~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  160 (220)
                      + .......++|+||+++|........+.....+|.+..++......... .....+++.+.|.
T Consensus       213 ~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~-~~~~gk~v~ViGg  275 (564)
T PRK12771        213 DITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGE-PPFLGKRVVVIGG  275 (564)
T ss_pred             cCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccC-CcCCCCCEEEECC
Confidence            1 122333479999999998654444444455556655544322111111 2233456666663

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.55  E-value=2.6e-06  Score=66.39  Aligned_cols=99  Identities=19%  Similarity=0.313  Sum_probs=73.4

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  121 (220)
                      .|++++|+|.|.+|..+++.++.+|++|++..++.++...+ ..+|...+    ..+.+.+....+|+||+|++....-.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~-~~~g~~~~----~~~~l~~~l~~aDiVint~P~~ii~~  224 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI-TEMGLIPF----PLNKLEEKVAEIDIVINTIPALVLTA  224 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHCCCeee----cHHHHHHHhccCCEEEECCChHHhCH
Confidence            57899999999999999999999999999999987665554 34554322    22334455568999999997652234


Q ss_pred             HHHhccccCCEEEEeCCCCCCCCC
Q 027664          122 PLIGLLKSQGKLVLLGAPEKPLEL  145 (220)
Q Consensus       122 ~~~~~l~~~G~~v~~g~~~~~~~~  145 (220)
                      ..++.++++..++.++...+...|
T Consensus       225 ~~l~~~k~~aliIDlas~Pg~tdf  248 (287)
T TIGR02853       225 DVLSKLPKHAVIIDLASKPGGTDF  248 (287)
T ss_pred             HHHhcCCCCeEEEEeCcCCCCCCH
Confidence            567788888888888776554444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.46  E-value=5.4e-07  Score=62.33  Aligned_cols=96  Identities=20%  Similarity=0.349  Sum_probs=66.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCC--EEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGAD--SFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      -.+.+++|+|+|++|.+++..+...|+ +++++.++.++.+.+.+.++..  ..+...+   +.+....+|++|+|++..
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~---~~~~~~~~DivI~aT~~~   86 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED---LEEALQEADIVINATPSG   86 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG---HCHHHHTESEEEE-SSTT
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH---HHHHHhhCCeEEEecCCC
Confidence            358999999999999999999999999 6999999999888888887432  2333332   223345899999999876


Q ss_pred             cc--HHHHHhcccc-CCEEEEeCCC
Q 027664          118 HP--LMPLIGLLKS-QGKLVLLGAP  139 (220)
Q Consensus       118 ~~--~~~~~~~l~~-~G~~v~~g~~  139 (220)
                      ..  ....+....+ -+.++.++.+
T Consensus        87 ~~~i~~~~~~~~~~~~~~v~Dla~P  111 (135)
T PF01488_consen   87 MPIITEEMLKKASKKLRLVIDLAVP  111 (135)
T ss_dssp             STSSTHHHHTTTCHHCSEEEES-SS
T ss_pred             CcccCHHHHHHHHhhhhceeccccC
Confidence            32  1223332222 2577777653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.44  E-value=5.7e-07  Score=74.02  Aligned_cols=106  Identities=24%  Similarity=0.339  Sum_probs=72.1

Q ss_pred             EeCCCCCCccccccccchhhhhhhHHHhhcC---CCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHH
Q 027664            9 VRIPEGAPLDATAPLLCAGITVYSPLRFYGL---DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE   84 (220)
Q Consensus         9 ~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~---~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~   84 (220)
                      +++|+.+..+.+. .......++.++.....   -.++++|+|+|+|.+|..+++.++..|+ +|+++.++.++...+++
T Consensus       146 ~~~~k~v~~~t~i-~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~  224 (423)
T PRK00045        146 FSVAKRVRTETGI-GAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAE  224 (423)
T ss_pred             HHHHhhHhhhcCC-CCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            3455555444332 22233444555544332   2578999999999999999999999998 89999998877777777


Q ss_pred             HcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           85 RLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        85 ~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      .+|.+ +++.   +...+...++|+||+|+|.+..
T Consensus       225 ~~g~~-~~~~---~~~~~~l~~aDvVI~aT~s~~~  255 (423)
T PRK00045        225 EFGGE-AIPL---DELPEALAEADIVISSTGAPHP  255 (423)
T ss_pred             HcCCc-EeeH---HHHHHHhccCCEEEECCCCCCc
Confidence            88764 3322   2233444589999999998643

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.42  E-value=3.5e-06  Score=69.26  Aligned_cols=93  Identities=17%  Similarity=0.225  Sum_probs=73.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      .-.|++++|+|.|.+|..+++.++.+|++|+++..++.+..++ ...|+..+    +   +.+.....|+++.++|....
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A-~~~G~~~~----~---leell~~ADIVI~atGt~~i  322 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQA-AMEGYQVV----T---LEDVVETADIFVTATGNKDI  322 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHH-HhcCceec----c---HHHHHhcCCEEEECCCcccc
Confidence            3579999999999999999999999999999988776654444 33465322    1   33445689999999998766


Q ss_pred             HH-HHHhccccCCEEEEeCCCC
Q 027664          120 LM-PLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       120 ~~-~~~~~l~~~G~~v~~g~~~  140 (220)
                      +. ..+..|++++.++.+|...
T Consensus       323 I~~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        323 ITLEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             cCHHHHhccCCCcEEEEcCCCc
Confidence            64 7899999999999998764

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=98.27  E-value=6.7e-06  Score=61.36  Aligned_cols=75  Identities=17%  Similarity=0.306  Sum_probs=61.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC----CCEEEcCCCHHHH----HHhc---CCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----ADSFLVSRDQDEM----QAAM---GTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~----~~~~---~~~d~  109 (220)
                      .++.++|.|+ +++|.++++.+...|++|+.+.++.+++++++.+++    ....+|..+.+.+    ..+.   +.+|+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            4578999998 899999999999999999999999999999999998    2445677776543    3332   36999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      .++-+|-
T Consensus        85 LvNNAGl   91 (246)
T COG4221          85 LVNNAGL   91 (246)
T ss_pred             EEecCCC
Confidence            9998875

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.25  E-value=1.1e-05  Score=66.44  Aligned_cols=75  Identities=20%  Similarity=0.400  Sum_probs=58.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      .++++++|+|+|.+|..+++.++..|+ +|+++.++.++...+++.+|.. .++.   +...+...++|+||.|++.+..
T Consensus       178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~-~i~~---~~l~~~l~~aDvVi~aT~s~~~  253 (417)
T TIGR01035       178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGE-AVKF---EDLEEYLAEADIVISSTGAPHP  253 (417)
T ss_pred             ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCe-EeeH---HHHHHHHhhCCEEEECCCCCCc
Confidence            678999999999999999999999995 8999999987767677777764 2222   2333444589999999987653

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.19  E-value=1.8e-05  Score=63.59  Aligned_cols=97  Identities=24%  Similarity=0.247  Sum_probs=74.5

Q ss_pred             CEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccchHHHHHHc--CC-CEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERL--GA-DSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      .+|||+|+|.+|+.+++.+.+.| .+|++.+++.++..++...-  +. ...+|..+.+.+.++..++|+||+|.+....
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            46899999999999999988888 59999999988877774432  22 4556777777888888888999999998755


Q ss_pred             HHHHHhccccCCEEEEeCCCC
Q 027664          120 LMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +..+-.|++.+=.++.+....
T Consensus        82 ~~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          82 LTILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             HHHHHHHHHhCCCEEEcccCC
Confidence            544556666666777766544

>PRK08324 short chain dehydrogenase; Validated

Probab=98.16  E-value=1.7e-05  Score=69.34  Aligned_cols=75  Identities=25%  Similarity=0.331  Sum_probs=56.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-----CEEEcCCCHHHHHHh-------cCCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-----DSFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~-------~~~~d  108 (220)
                      +|+++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++.     ....|..+.+.+.+.       .+++|
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD  500 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD  500 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999996 9999999999999999999999998776666555543     122355555444332       24799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|+++|.
T Consensus       501 vvI~~AG~  508 (681)
T PRK08324        501 IVVSNAGI  508 (681)
T ss_pred             EEEECCCC
Confidence            99999983

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.14  E-value=1.7e-05  Score=57.61  Aligned_cols=92  Identities=26%  Similarity=0.320  Sum_probs=67.5

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCcc----c
Q 027664           46 VGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVH----P  119 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~----~  119 (220)
                      |+|.|+ |.+|..+++.+...|.+|+++++++++.+.   ..+++.+ .|..+.+.+.+...++|.||.++|...    .
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~~   77 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVDA   77 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcccccc
Confidence            689998 999999999999999999999999886665   3344433 355566777777779999999998532    2


Q ss_pred             HHHHHhccccCC--EEEEeCCCC
Q 027664          120 LMPLIGLLKSQG--KLVLLGAPE  140 (220)
Q Consensus       120 ~~~~~~~l~~~G--~~v~~g~~~  140 (220)
                      ....++.++..|  +++.++...
T Consensus        78 ~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   78 AKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETT
T ss_pred             cccccccccccccccceeeeccc
Confidence            445555554443  677665443

...

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=98.13  E-value=1.3e-05  Score=58.19  Aligned_cols=75  Identities=16%  Similarity=0.182  Sum_probs=58.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC--CCEEEcCCCHHHHH----HhcC---CccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG--ADSFLVSRDQDEMQ----AAMG---TMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~----~~~~---~~d~v~  111 (220)
                      .|.+|||.|+ +++|+..++-....|-+||++.++++++++.+....  .+.+.|..+.+..+    ++.+   ..++++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvli   83 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLI   83 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchheee
Confidence            5789999986 899999999999999999999999999998866655  25566666654333    3322   678899


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|-
T Consensus        84 NNAGI   88 (245)
T COG3967          84 NNAGI   88 (245)
T ss_pred             ecccc
Confidence            88874

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=98.13  E-value=4.1e-05  Score=64.64  Aligned_cols=78  Identities=21%  Similarity=0.233  Sum_probs=58.9

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc--------C------CCE-EEcCCCHHHHHHh
Q 027664           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--------G------ADS-FLVSRDQDEMQAA  103 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~--------g------~~~-~~~~~~~~~~~~~  103 (220)
                      .+.|+++||.|+ |.+|..+++.+...|.+|++++++.++...+.+.+        |      +.. ..|..+.+.+.+.
T Consensus        77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            568899999997 99999999988888999999999887665543321        1      111 2355566667666


Q ss_pred             cCCccEEEEcCCCc
Q 027664          104 MGTMDGIIDTVSAV  117 (220)
Q Consensus       104 ~~~~d~v~d~~g~~  117 (220)
                      .+++|+||.++|..
T Consensus       157 LggiDiVVn~AG~~  170 (576)
T PLN03209        157 LGNASVVICCIGAS  170 (576)
T ss_pred             hcCCCEEEEccccc
Confidence            67899999999853

>PRK12742 oxidoreductase; Provisional

Probab=98.10  E-value=5.8e-05  Score=57.11  Aligned_cols=75  Identities=21%  Similarity=0.286  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-ccchHHHHHHcCCCEE-EcCCCHHHHHHhc---CCccEEEEcCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVERLGADSF-LVSRDQDEMQAAM---GTMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~-~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~---~~~d~v~d~~g  115 (220)
                      .++++||.|+ |++|..+++.+...|++|+.+.++ .++.+++.+.++...+ .|..+.+.+.+..   +++|++++++|
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag   84 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNAG   84 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECCC
Confidence            4789999997 999999999988899998877653 4444455455565433 3555554444332   36999999987


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        85 ~   85 (237)
T PRK12742         85 I   85 (237)
T ss_pred             C
Confidence            5

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.09  E-value=2.6e-05  Score=56.59  Aligned_cols=121  Identities=19%  Similarity=0.312  Sum_probs=81.4

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--  118 (220)
                      -.|++|.|+|.|.+|..+++.++.+|++|++.+++....... ...+..    ..+   ++++....|+|+.+.....  
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-~~~~~~----~~~---l~ell~~aDiv~~~~plt~~T  105 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-DEFGVE----YVS---LDELLAQADIVSLHLPLTPET  105 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-HHTTEE----ESS---HHHHHHH-SEEEE-SSSSTTT
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhc-ccccce----eee---hhhhcchhhhhhhhhcccccc
Confidence            468999999999999999999999999999999998644322 334431    222   3334446799998887421  


Q ss_pred             ---cHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHH
Q 027664          119 ---PLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVN  193 (220)
Q Consensus       119 ---~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~  193 (220)
                         .=...+..|+++..+|.++-..                        .-+-+.+++++++|++.--. ++|.-|..+
T Consensus       106 ~~li~~~~l~~mk~ga~lvN~aRG~------------------------~vde~aL~~aL~~g~i~ga~lDV~~~EP~~  160 (178)
T PF02826_consen  106 RGLINAEFLAKMKPGAVLVNVARGE------------------------LVDEDALLDALESGKIAGAALDVFEPEPLP  160 (178)
T ss_dssp             TTSBSHHHHHTSTTTEEEEESSSGG------------------------GB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred             ceeeeeeeeeccccceEEEeccchh------------------------hhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence               1246788999999888875321                        12356788889999988543 666655444

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=4e-05  Score=56.21  Aligned_cols=98  Identities=29%  Similarity=0.304  Sum_probs=70.8

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHH---HHHcCCCEE-EcCCCHHHHHHhc--CCccEE
Q 027664           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA---VERLGADSF-LVSRDQDEMQAAM--GTMDGI  110 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~---~~~~g~~~~-~~~~~~~~~~~~~--~~~d~v  110 (220)
                      ...++++++||-+|+| .|..++-+++..| +|+.+.+.++-.+.+   ++.+|...+ +...|-  ..-+.  ..||.+
T Consensus        67 ~L~~~~g~~VLEIGtG-sGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG--~~G~~~~aPyD~I  142 (209)
T COG2518          67 LLELKPGDRVLEIGTG-SGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDG--SKGWPEEAPYDRI  142 (209)
T ss_pred             HhCCCCCCeEEEECCC-chHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc--ccCCCCCCCcCEE
Confidence            3447999999999997 4999999999888 999998887643333   345676333 222221  11111  279999


Q ss_pred             EEcCCCcccHHHHHhccccCCEEEEeCC
Q 027664          111 IDTVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       111 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      +-+.+.+..-+.+++.|++||+++..-.
T Consensus       143 ~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         143 IVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence            9888887777899999999999987543

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.07  E-value=8.4e-05  Score=53.20  Aligned_cols=100  Identities=19%  Similarity=0.263  Sum_probs=69.9

Q ss_pred             cccccccchhhhhhhHHHhhcCCCCCCEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCC
Q 027664           18 DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD   96 (220)
Q Consensus        18 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~-~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~   96 (220)
                      ....-.|+...++...+.....--.|++++|+|+|. +|..++..++..|++|+++.++.+                   
T Consensus        19 ~~~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~-------------------   79 (168)
T cd01080          19 GRPGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK-------------------   79 (168)
T ss_pred             CCCCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch-------------------
Confidence            334556776666666666554336889999999986 599999999999999888877632                   


Q ss_pred             HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664           97 QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        97 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                        .+.+....+|+||-|++.+..+..  +.++++-.++.++.+.
T Consensus        80 --~l~~~l~~aDiVIsat~~~~ii~~--~~~~~~~viIDla~pr  119 (168)
T cd01080          80 --NLKEHTKQADIVIVAVGKPGLVKG--DMVKPGAVVIDVGINR  119 (168)
T ss_pred             --hHHHHHhhCCEEEEcCCCCceecH--HHccCCeEEEEccCCC
Confidence              122334578999999998754333  2456666777777654

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.06  E-value=7.4e-05  Score=52.67  Aligned_cols=96  Identities=20%  Similarity=0.267  Sum_probs=65.8

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      ...-.|++++|.|=|.+|.-+++.++.+|++|+++...+-+..++. .-|....       .+.+.....|+++-++|+.
T Consensus        18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-~dGf~v~-------~~~~a~~~adi~vtaTG~~   89 (162)
T PF00670_consen   18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-MDGFEVM-------TLEEALRDADIFVTATGNK   89 (162)
T ss_dssp             -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-HTT-EEE--------HHHHTTT-SEEEE-SSSS
T ss_pred             ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-hcCcEec-------CHHHHHhhCCEEEECCCCc
Confidence            3346799999999999999999999999999999999987665552 3455322       2445566889999999997


Q ss_pred             ccH-HHHHhccccCCEEEEeCCCCC
Q 027664          118 HPL-MPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       118 ~~~-~~~~~~l~~~G~~v~~g~~~~  141 (220)
                      ..+ .+-+..|+++..++.+|....
T Consensus        90 ~vi~~e~~~~mkdgail~n~Gh~d~  114 (162)
T PF00670_consen   90 DVITGEHFRQMKDGAILANAGHFDV  114 (162)
T ss_dssp             SSB-HHHHHHS-TTEEEEESSSSTT
T ss_pred             cccCHHHHHHhcCCeEEeccCcCce
Confidence            643 577888988888888875543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.04  E-value=4.2e-05  Score=58.98  Aligned_cols=99  Identities=19%  Similarity=0.232  Sum_probs=79.2

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCC---Cc--
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVS---AV--  117 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g---~~--  117 (220)
                      ..+|.|+|+|.+|.-++.+|..+|++|++.+.+.+|+.++...++.....-++....+++...+.|++|.++-   ..  
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaP  247 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAP  247 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCc
Confidence            3558888999999999999999999999999999998888666666533446667777777778999998762   21  


Q ss_pred             -ccHHHHHhccccCCEEEEeCCCCC
Q 027664          118 -HPLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       118 -~~~~~~~~~l~~~G~~v~~g~~~~  141 (220)
                       -..++.++.|++|+.++.+....+
T Consensus       248 kLvt~e~vk~MkpGsVivDVAiDqG  272 (371)
T COG0686         248 KLVTREMVKQMKPGSVIVDVAIDQG  272 (371)
T ss_pred             eehhHHHHHhcCCCcEEEEEEEcCC
Confidence             135788999999999999887654

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.03  E-value=7.2e-05  Score=56.62  Aligned_cols=99  Identities=21%  Similarity=0.341  Sum_probs=67.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC---CCEE--EcCCCHHHHHHh-------cCCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---ADSF--LVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g---~~~~--~~~~~~~~~~~~-------~~~~d  108 (220)
                      ++++++|.|+ |.+|..+++.+...|++|+.+++++++.+.+.+.+.   ..+.  .|..+.+.+.+.       .+++|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4689999997 999999999999999999999998876655533332   1122  244444433222       23689


Q ss_pred             EEEEcCCCcc-----------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          109 GIIDTVSAVH-----------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       109 ~v~d~~g~~~-----------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .++.++|...                       ..+..+.+++++|+++.++...
T Consensus        84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~  138 (238)
T PRK05786         84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMS  138 (238)
T ss_pred             EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecch
Confidence            9999887421                       1234455666788898887654

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.00  E-value=0.00015  Score=58.92  Aligned_cols=114  Identities=25%  Similarity=0.202  Sum_probs=74.4

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-CCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~   99 (220)
                      .++..+....+..+.....+++|++||.+|+| .|..+..+++..|++|++++.+++..+.+.+... ...-+...+   
T Consensus       146 ~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D---  221 (383)
T PRK11705        146 DTLEEAQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQD---  221 (383)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECc---
Confidence            34444444445544444457899999999986 5778888898889999999999887766654432 111111111   


Q ss_pred             HHHhcCCccEEEE-----cCCC---cccHHHHHhccccCCEEEEeCC
Q 027664          100 MQAAMGTMDGIID-----TVSA---VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       100 ~~~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ...+.+.||.|+.     .+|.   ...+..+.+.|+++|.++....
T Consensus       222 ~~~l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        222 YRDLNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             hhhcCCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            2223347998863     3443   2346788889999999987643

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.97  E-value=3.7e-05  Score=58.75  Aligned_cols=77  Identities=14%  Similarity=0.229  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-----E--EcCCCHHHHHHh----c---C
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-----F--LVSRDQDEMQAA----M---G  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-----~--~~~~~~~~~~~~----~---~  105 (220)
                      ..+.++||.|| +++|...+..+...|.+++.+.++.++++++.+++.-.+     +  +|..+.+.+..+    .   .
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~   83 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG   83 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence            56789999998 899999999999999999999999999988877765211     2  355555443332    1   2


Q ss_pred             CccEEEEcCCCc
Q 027664          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~v~d~~g~~  117 (220)
                      .+|+.++++|-.
T Consensus        84 ~IdvLVNNAG~g   95 (265)
T COG0300          84 PIDVLVNNAGFG   95 (265)
T ss_pred             cccEEEECCCcC
Confidence            699999999863

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.97  E-value=0.00016  Score=53.34  Aligned_cols=97  Identities=16%  Similarity=0.215  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHH---HHcC-CCE--EEcCCCHHHHHHhcCCccEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAV---ERLG-ADS--FLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~---~~~g-~~~--~~~~~~~~~~~~~~~~~d~v  110 (220)
                      .+.++++|+.+|+|. |.+++.+++..+  .+|+.++.+++..+.+.   +.++ .+.  ++..+..+.+....+.+|.|
T Consensus        37 ~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V  115 (198)
T PRK00377         37 RLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI  115 (198)
T ss_pred             CCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence            378999999999987 998999888764  48999999987655442   3355 222  22222223333333579999


Q ss_pred             EEcCCCc---ccHHHHHhccccCCEEEEe
Q 027664          111 IDTVSAV---HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       111 ~d~~g~~---~~~~~~~~~l~~~G~~v~~  136 (220)
                      |...+..   ..+..+.+.|+++|+++..
T Consensus       116 ~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377        116 FIGGGSEKLKEIISASWEIIKKGGRIVID  144 (198)
T ss_pred             EECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence            9865432   2467788899999999863

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.96  E-value=7.1e-05  Score=49.73  Aligned_cols=94  Identities=28%  Similarity=0.325  Sum_probs=63.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHH-HCCCeEEEEeCCccchHHHHHHc---CC--CEEEcCCCHHHHHHhcCCccEEEEcC-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAK-AMGVKVTVISTSPSKKSEAVERL---GA--DSFLVSRDQDEMQAAMGTMDGIIDTV-  114 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~-~~g~~vi~~~~~~~~~~~~~~~~---g~--~~~~~~~~~~~~~~~~~~~d~v~d~~-  114 (220)
                      |+.+||-+|+|. |..++.+++ ..+++|++++.+++..+.+.+..   +.  ...+...+........+.||+|+... 
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~   79 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGF   79 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSG
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCC
Confidence            688999999974 888888888 47889999999998776665555   21  21122222211222334799999766 


Q ss_pred             CCc---c------cHHHHHhccccCCEEEEe
Q 027664          115 SAV---H------PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       115 g~~---~------~~~~~~~~l~~~G~~v~~  136 (220)
                      ...   .      .++.+.+.|+++|+++..
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   80 TLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence            221   1      257788999999999864

...

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.96  E-value=2.7e-05  Score=59.85  Aligned_cols=111  Identities=21%  Similarity=0.212  Sum_probs=74.5

Q ss_pred             hhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCCEEEcCCCHHHHHHhc
Q 027664           28 ITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADSFLVSRDQDEMQAAM  104 (220)
Q Consensus        28 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~  104 (220)
                      ...+..+.....+++|+++|=+||| -|.+++.+|+..|++|+.++-+++....+.+   ..|.+.-+.. .....+.+.
T Consensus        58 ~~k~~~~~~kl~L~~G~~lLDiGCG-WG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v-~l~d~rd~~  135 (283)
T COG2230          58 RAKLDLILEKLGLKPGMTLLDIGCG-WGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEV-RLQDYRDFE  135 (283)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCC-hhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEE-Eeccccccc
Confidence            3344444444558999999999997 4888899999999999999999987655533   3454300000 011223333


Q ss_pred             CCccEE-----EEcCCCc---ccHHHHHhccccCCEEEEeCCCC
Q 027664          105 GTMDGI-----IDTVSAV---HPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       105 ~~~d~v-----~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +.||-|     |+-+|..   ..+..+.+.|+++|++.+-....
T Consensus       136 e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         136 EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence            457776     4566652   34778889999999998776554

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.95  E-value=0.00025  Score=52.18  Aligned_cols=77  Identities=21%  Similarity=0.269  Sum_probs=56.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCCE-EEcCCCHHHHHHhcCCccEEEEcCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADS-FLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      .+.+++|+|+ |.+|..++..+...|.+|+++.++.++.+.+.+.+    +... ..+..+.+.+.+...++|+||.+++
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~  106 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGA  106 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCC
Confidence            5789999997 99999998888888999999999887776665544    2221 2234445555555668999999987


Q ss_pred             Ccc
Q 027664          116 AVH  118 (220)
Q Consensus       116 ~~~  118 (220)
                      ...
T Consensus       107 ~g~  109 (194)
T cd01078         107 AGV  109 (194)
T ss_pred             CCc
Confidence            664

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.95  E-value=0.0001  Score=56.54  Aligned_cols=124  Identities=24%  Similarity=0.279  Sum_probs=76.3

Q ss_pred             cccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHH
Q 027664            4 DEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA   82 (220)
Q Consensus         4 ~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~   82 (220)
                      +...+++++++++|..+. .+.+. .+...+...  +.++++||.+|+|. |..++.+++ .|+ +|++++.++...+.+
T Consensus        85 ~~~~~i~i~p~~afgtg~-h~tt~-~~l~~l~~~--~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis~~~l~~A  158 (250)
T PRK00517         85 PDEINIELDPGMAFGTGT-HPTTR-LCLEALEKL--VLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDIDPQAVEAA  158 (250)
T ss_pred             CCeEEEEECCCCccCCCC-CHHHH-HHHHHHHhh--cCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECCHHHHHHH
Confidence            455677888888877654 22221 122223322  46889999999986 877776554 577 699999998776655


Q ss_pred             HHHc---CCCEEEcCCCHHHHHHhcCCccEEEEcCCCc---ccHHHHHhccccCCEEEEeCCC
Q 027664           83 VERL---GADSFLVSRDQDEMQAAMGTMDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus        83 ~~~~---g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      .+..   +....+.....      ...||+|+-.....   ..+..+.+.|+++|+++..|..
T Consensus       159 ~~n~~~~~~~~~~~~~~~------~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        159 RENAELNGVELNVYLPQG------DLKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             HHHHHHcCCCceEEEccC------CCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            4433   22111110000      01589998655432   2356788899999999998654

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=0.00017  Score=55.90  Aligned_cols=97  Identities=16%  Similarity=0.283  Sum_probs=72.7

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~-~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ...||+.......+....---.|++++|+|.|. +|.-+++++...|++|+++.+...                     .
T Consensus       136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~  194 (286)
T PRK14175        136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------D  194 (286)
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------h
Confidence            356777777777776665335799999999865 999999999999999998876421                     1


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +.+....+|+||-++|.+..+..  +.++++-.++.+|...
T Consensus       195 l~~~~~~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~  233 (286)
T PRK14175        195 MASYLKDADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP  233 (286)
T ss_pred             HHHHHhhCCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence            33444578999999999865544  4578888888888754

>PRK06182 short chain dehydrogenase; Validated

Probab=97.93  E-value=0.00022  Score=55.25  Aligned_cols=74  Identities=22%  Similarity=0.301  Sum_probs=53.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHh-------cCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      ++++++|.|+ |++|..+++.+...|.+|++++++.++...+. ..+...+ .|..+.+.+.+.       .+++|++++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            4678999997 99999999988888999999999877655442 3344322 465665544332       237999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        81 ~ag~   84 (273)
T PRK06182         81 NAGY   84 (273)
T ss_pred             CCCc
Confidence            9985

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.91  E-value=0.00013  Score=59.81  Aligned_cols=76  Identities=16%  Similarity=0.218  Sum_probs=58.5

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      -.+.+++|+|+|.+|.+++..+...|+ +++++.++.++.+.+...++...++.   .+.+.+....+|+||.|++.+..
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~---~~~l~~~l~~aDiVI~aT~a~~~  255 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHY---LSELPQLIKKADIIIAAVNVLEY  255 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEec---HHHHHHHhccCCEEEECcCCCCe
Confidence            467899999999999999999999997 89999999888777877776222222   23334445679999999998754

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.88  E-value=0.00029  Score=50.67  Aligned_cols=96  Identities=21%  Similarity=0.253  Sum_probs=66.9

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccchHH---HHHHcCCC--EEEcCCCHHHHHHhcCCccEEEEc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSE---AVERLGAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~---~~~~~g~~--~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      +++|+.++=+||| .|..+++++.... .+|+++++++++.+.   .+++||.+  .++....++.+.+.. .+|.+|--
T Consensus        32 ~~~g~~l~DIGaG-tGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIG  109 (187)
T COG2242          32 PRPGDRLWDIGAG-TGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIG  109 (187)
T ss_pred             CCCCCEEEEeCCC-ccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEEC
Confidence            7899988888986 3777788885543 499999999876443   44567765  334444455554333 79999854


Q ss_pred             CCC--cccHHHHHhccccCCEEEEeC
Q 027664          114 VSA--VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       114 ~g~--~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      -|.  +..++.++..|+++|++|.-.
T Consensus       110 Gg~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         110 GGGNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             CCCCHHHHHHHHHHHcCcCCeEEEEe
Confidence            432  235788999999999998754

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.85  E-value=0.00012  Score=59.79  Aligned_cols=92  Identities=18%  Similarity=0.250  Sum_probs=64.4

Q ss_pred             EEEEccchhHHHHHHHHHHCC-C-eEEEEeCCccchHHHHHHc-C--C-CEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMG-V-KVTVISTSPSKKSEAVERL-G--A-DSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g-~-~vi~~~~~~~~~~~~~~~~-g--~-~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      |+|+|+|.+|..+++.+...+ . +|++.+++.++.+++.+.+ +  . ...+|..+.+.+.++..+.|+|++|+|....
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~   80 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFG   80 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchh
Confidence            688999999999998877665 4 8999999998877776542 2  2 3335666777788888889999999997644


Q ss_pred             HHHHHhccccCCEEEEeC
Q 027664          120 LMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~g  137 (220)
                      ...+-.|+..+-.++...
T Consensus        81 ~~v~~~~i~~g~~yvD~~   98 (386)
T PF03435_consen   81 EPVARACIEAGVHYVDTS   98 (386)
T ss_dssp             HHHHHHHHHHT-EEEESS
T ss_pred             HHHHHHHHHhCCCeeccc
Confidence            555666777788888843

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.85  E-value=0.00026  Score=50.02  Aligned_cols=105  Identities=22%  Similarity=0.272  Sum_probs=67.6

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHhcCCccE
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~d~  109 (220)
                      .++.....-..+.+++|+|+|.+|...++.+...| .+|++++++.++.+.+.+.++... .....+   ..+..+++|+
T Consensus         8 ~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv   84 (155)
T cd01065           8 RALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLD---LEELLAEADL   84 (155)
T ss_pred             HHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecc---hhhccccCCE
Confidence            34444432145788999999999999998888886 589999998877777766666421 011112   2222458999


Q ss_pred             EEEcCCCccc----HHHHHhccccCCEEEEeCCC
Q 027664          110 IIDTVSAVHP----LMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       110 v~d~~g~~~~----~~~~~~~l~~~G~~v~~g~~  139 (220)
                      |+.|++....    .......++++..++.++..
T Consensus        85 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~  118 (155)
T cd01065          85 IINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN  118 (155)
T ss_pred             EEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence            9999987632    11112345666667766543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.85  E-value=0.00018  Score=58.30  Aligned_cols=96  Identities=27%  Similarity=0.426  Sum_probs=70.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      -.+.++||+|+|-+|..++..+...|. +|++..++.++-+++++++|+..+    ..+.+......+|+||-|+|.+..
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~----~l~el~~~l~~~DvVissTsa~~~  251 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAV----ALEELLEALAEADVVISSTSAPHP  251 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeee----cHHHHHHhhhhCCEEEEecCCCcc
Confidence            467899999999999999999999997 899999999999999999995433    334455556689999999998753


Q ss_pred             H---HHHHhccccC-C-EEEEeCCCC
Q 027664          120 L---MPLIGLLKSQ-G-KLVLLGAPE  140 (220)
Q Consensus       120 ~---~~~~~~l~~~-G-~~v~~g~~~  140 (220)
                      +   ...-..+... . -++.++.+.
T Consensus       252 ii~~~~ve~a~~~r~~~livDiavPR  277 (414)
T COG0373         252 IITREMVERALKIRKRLLIVDIAVPR  277 (414)
T ss_pred             ccCHHHHHHHHhcccCeEEEEecCCC
Confidence            2   2233333332 2 355666544

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.84  E-value=0.00038  Score=53.59  Aligned_cols=75  Identities=17%  Similarity=0.253  Sum_probs=55.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC--E-EEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD--S-FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~--~-~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .+++++|.|+ |++|..+++.+...|++|++++++.++.+++.+.++..  . ..|..+++.+.++       .+.+|++
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l   84 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL   84 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4689999997 99999999988888999999999887666666665532  1 2355555443332       2478999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      +.++|.
T Consensus        85 v~~ag~   90 (261)
T PRK08265         85 VNLACT   90 (261)
T ss_pred             EECCCC
Confidence            999874

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.84  E-value=0.00028  Score=58.85  Aligned_cols=75  Identities=17%  Similarity=0.259  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc--cchHHHHHHcCCCE-EEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP--SKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~--~~~~~~~~~~g~~~-~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +++++||.|+ |++|..+++.+...|++|++++++.  ++...+.+.++... ..|..+.+.++++       .+++|++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~v  288 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIV  288 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            5789999997 9999999998888999999888743  23344444555432 3466665544332       1368999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      |+++|.
T Consensus       289 i~~AG~  294 (450)
T PRK08261        289 VHNAGI  294 (450)
T ss_pred             EECCCc
Confidence            999984

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.83  E-value=0.00034  Score=51.30  Aligned_cols=106  Identities=18%  Similarity=0.210  Sum_probs=73.9

Q ss_pred             CCCEEEEEcc--chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-CEEEcCCCHHHHH-------HhcC-CccEE
Q 027664           42 PGMHVGVVGL--GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQ-------AAMG-TMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~--g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~-------~~~~-~~d~v  110 (220)
                      ..+.|||.|+  |++|.+++.-...-|+.|+++.++-++..++..++|. ..-+|.++++.+.       +..+ ..|+.
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            4577999985  8999999988888899999999999988888777885 3445666655433       3233 68999


Q ss_pred             EEcCCCccc------------------------HHHHH--hccccCCEEEEeCCCCCCCCCCc
Q 027664          111 IDTVSAVHP------------------------LMPLI--GLLKSQGKLVLLGAPEKPLELPA  147 (220)
Q Consensus       111 ~d~~g~~~~------------------------~~~~~--~~l~~~G~~v~~g~~~~~~~~~~  147 (220)
                      ++-+|.+=.                        +.+++  .+.+..|+||.+|...+-.++++
T Consensus        86 ~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf  148 (289)
T KOG1209|consen   86 YNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPF  148 (289)
T ss_pred             EcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccch
Confidence            987775300                        11111  23467799999988765444443

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.81  E-value=0.00042  Score=53.91  Aligned_cols=74  Identities=15%  Similarity=0.248  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHh-------c-CCccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------M-GTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~-------~-~~~d~v~  111 (220)
                      .+++++|.|+ |++|..+++.+...|.+|++++++.++...+. ..+.+.+ .|..+.+.+++.       . +.+|+++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE-AEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            4678999997 99999999988888999999999887666553 3454433 455565433221       1 3689999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        82 ~~Ag~   86 (277)
T PRK05993         82 NNGAY   86 (277)
T ss_pred             ECCCc
Confidence            99864

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.81  E-value=0.00027  Score=55.38  Aligned_cols=76  Identities=14%  Similarity=0.318  Sum_probs=52.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc---cchHHHHHHcCC---C---EEEcCCCHHHHHHhcCCccEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP---SKKSEAVERLGA---D---SFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~---~~~~~~~~~~g~---~---~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      ..+++++|.|+|++|.+++..+...|+ +|+++.++.   ++.+++.+.+..   .   ...+..+.+.+.+....+|++
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil  203 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL  203 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence            357899999999999999888888899 599999886   455555444421   1   123333333444444578999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++|++-
T Consensus       204 INaTp~  209 (289)
T PRK12548        204 VNATLV  209 (289)
T ss_pred             EEeCCC
Confidence            999853

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.81  E-value=0.00018  Score=56.49  Aligned_cols=75  Identities=24%  Similarity=0.349  Sum_probs=56.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--CEE---EcCCCHHHHHHh-------cCCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSF---LVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~~~---~~~~~~~~~~~~-------~~~~d  108 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++.  +..   .|..+.+.+.+.       .+++|
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   87 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID   87 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999997 9999999999988999999999998877777666652  211   455665443332       24799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++++++|.
T Consensus        88 ~vI~nAG~   95 (296)
T PRK05872         88 VVVANAGI   95 (296)
T ss_pred             EEEECCCc
Confidence            99999985

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.80  E-value=9.5e-05  Score=57.67  Aligned_cols=76  Identities=26%  Similarity=0.262  Sum_probs=54.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCC-EEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      .+++++|+|+|+.|.+++..+...|+ +|+++.++.++.+.+++.++.. .+......+.+......+|+||+|++..
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            57899999999999999998889998 8999999988887777666431 1111111122223335799999998764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.80  E-value=0.00028  Score=56.25  Aligned_cols=101  Identities=19%  Similarity=0.263  Sum_probs=70.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHH-HHCCC-eEEEEeCCccchHHHHHHc----CCCEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFA-KAMGV-KVTVISTSPSKKSEAVERL----GADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la-~~~g~-~vi~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      +..+++.|+|+|..|...+..+ ...++ +|.+..+++++.+.+.+.+    +.+.. ...+   .++.....|+|+.|+
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~-~~~~---~~~~~~~aDiVi~aT  200 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIY-VVNS---ADEAIEEADIIVTVT  200 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEE-EeCC---HHHHHhcCCEEEEcc
Confidence            5668899999999998777544 45687 8888888888877776544    33311 1222   233345799999999


Q ss_pred             CCcccHHHHHhccccCCEEEEeCCCCC-CCCCCc
Q 027664          115 SAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPA  147 (220)
Q Consensus       115 g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~  147 (220)
                      +....+- . ..+++|-++..+|.... ..+++.
T Consensus       201 ~s~~p~i-~-~~l~~G~hV~~iGs~~p~~~E~~~  232 (325)
T PRK08618        201 NAKTPVF-S-EKLKKGVHINAVGSFMPDMQELPS  232 (325)
T ss_pred             CCCCcch-H-HhcCCCcEEEecCCCCcccccCCH
Confidence            8875433 3 88899999999987643 244454

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.80  E-value=0.00021  Score=54.31  Aligned_cols=75  Identities=21%  Similarity=0.401  Sum_probs=56.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhc---CCccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAM---GTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~---~~~d~v~d~~g~  116 (220)
                      .+++++|.|+ |.+|..+++.+...|.+|++++++.++.+++.+..+...+ .|..+.+.+.+..   +++|++|+++|.
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag~   87 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAGI   87 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            5688999997 8999999999988999999999987766666555555333 4556655444433   369999999985

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.80  E-value=0.00023  Score=54.93  Aligned_cols=107  Identities=18%  Similarity=0.334  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcC-CC-EE---EcCCCHHHHHHh-------c
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLG-AD-SF---LVSRDQDEMQAA-------M  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g-~~-~~---~~~~~~~~~~~~-------~  104 (220)
                      -.|+.|+|.|| +++|..++.-.-..|++++.+++...+++...+   +.+ .+ ..   .|-.+.+.++++       .
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            36789999998 899999998888889999999988877665533   233 23 11   244555444332       2


Q ss_pred             CCccEEEEcCCCcc-------------------------cHHHHHhccccC--CEEEEeCCCCCCCCCCc
Q 027664          105 GTMDGIIDTVSAVH-------------------------PLMPLIGLLKSQ--GKLVLLGAPEKPLELPA  147 (220)
Q Consensus       105 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~--G~~v~~g~~~~~~~~~~  147 (220)
                      +++|+.++-+|-..                         ....++..|++.  |+|+.++...+....+.
T Consensus        90 g~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~  159 (282)
T KOG1205|consen   90 GRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPF  159 (282)
T ss_pred             CCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCc
Confidence            48999998877531                         124455666543  99999988776544443

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.78  E-value=0.00024  Score=54.44  Aligned_cols=75  Identities=21%  Similarity=0.269  Sum_probs=55.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHh-------cCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      .|++++|.|+ |++|..+++.+...|++|++++++..+.+...+.++... ..|..+++.+++.       .+++|+++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   85 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFN   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5789999997 999999999888889999999988766555555555432 2455565444332       237899999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        86 ~ag~   89 (255)
T PRK06057         86 NAGI   89 (255)
T ss_pred             CCCc
Confidence            9874

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.78  E-value=0.00069  Score=52.28  Aligned_cols=75  Identities=15%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCC---EEEcCCCHHHHHHhc------CCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GAD---SFLVSRDQDEMQAAM------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~------~~~  107 (220)
                      .++++||.|+ +++|..+++.+...|++|++++++.++.+.+.+.+    +.+   ...|..+++.++++.      +++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            4789999997 89999999988889999999999877665554433    321   223555554333321      369


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        87 D~lv~nag~   95 (263)
T PRK08339         87 DIFFFSTGG   95 (263)
T ss_pred             cEEEECCCC
Confidence            999999875

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.78  E-value=0.00016  Score=56.01  Aligned_cols=87  Identities=17%  Similarity=0.310  Sum_probs=58.4

Q ss_pred             hhhHHHhhc--CCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcC
Q 027664           30 VYSPLRFYG--LDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMG  105 (220)
Q Consensus        30 a~~~l~~~~--~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~  105 (220)
                      .+.+|....  ...++++++|+|+|+.+.+++..++..|+ +++++.++.++.+++++.++.... +............ 
T Consensus       111 ~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~-  189 (283)
T COG0169         111 FLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLE-  189 (283)
T ss_pred             HHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccccccccccc-
Confidence            344455432  22458999999999999999999999997 899999999988888777663211 0111111111110 


Q ss_pred             CccEEEEcCCCc
Q 027664          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~v~d~~g~~  117 (220)
                      .+|++++|++-.
T Consensus       190 ~~dliINaTp~G  201 (283)
T COG0169         190 EADLLINATPVG  201 (283)
T ss_pred             ccCEEEECCCCC
Confidence            589999998753

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.77  E-value=0.00026  Score=55.19  Aligned_cols=95  Identities=21%  Similarity=0.249  Sum_probs=62.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      ..+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+++.++....+.. +. ...+....+|+|++|++....
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~-~~~~~~~~~DivInaTp~g~~  198 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-DL-ELQEELADFDLIINATSAGMS  198 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-cc-cchhccccCCEEEECCcCCCC
Confidence            457889999999999999999999995 999999998887777666542210111 00 112223579999999976421


Q ss_pred             H-----HHHHhccccCCEEEEeC
Q 027664          120 L-----MPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       120 ~-----~~~~~~l~~~G~~v~~g  137 (220)
                      -     ......+.++..++.+-
T Consensus       199 ~~~~~~~~~~~~l~~~~~v~Div  221 (278)
T PRK00258        199 GELPLPPLPLSLLRPGTIVYDMI  221 (278)
T ss_pred             CCCCCCCCCHHHcCCCCEEEEee
Confidence            0     11234556666666553

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.76  E-value=0.00026  Score=56.58  Aligned_cols=75  Identities=21%  Similarity=0.332  Sum_probs=55.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++++++.+++.+.   .|.+.   ..|..+.+.++++       .+++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   85 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI   85 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            5689999997 9999999999988999999999988776655443   34432   2355665544433       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus        86 D~lVnnAG~   94 (330)
T PRK06139         86 DVWVNNVGV   94 (330)
T ss_pred             CEEEECCCc
Confidence            999999984

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.72  E-value=0.00079  Score=53.92  Aligned_cols=75  Identities=19%  Similarity=0.310  Sum_probs=54.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |++|..+++.+...|++|+++++++++.+.+.++   .|.+.   ..|..+.+.+++.       .+++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i   86 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI   86 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            4678999997 9999999998888899999999987765554333   34322   2355565544432       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus        87 D~lInnAg~   95 (334)
T PRK07109         87 DTWVNNAMV   95 (334)
T ss_pred             CEEEECCCc
Confidence            999999985

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.72  E-value=0.00046  Score=51.20  Aligned_cols=115  Identities=16%  Similarity=0.081  Sum_probs=71.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc-chHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      .|.+|||+|+|.+|..-++.+...|++|++++.... ....+.+......+  ..+..  .....++++||-|++.+..-
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~--~~~~~--~~dl~~~~lVi~at~d~~ln   83 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWL--ARCFD--ADILEGAFLVIAATDDEELN   83 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEE--eCCCC--HHHhCCcEEEEECCCCHHHH
Confidence            468999999999999999999999999998887653 23333222222221  11111  12235899999999987544


Q ss_pred             HHHHhccccCCEEEEeCCCCCCCCCCchhhhcC-CeEEEEE
Q 027664          121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG-RKIVGGS  160 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~  160 (220)
                      .......+..|.+|..........|..+..+.+ .+++.-+
T Consensus        84 ~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iais  124 (205)
T TIGR01470        84 RRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAIS  124 (205)
T ss_pred             HHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEE
Confidence            556666677788886654443334443333333 4555443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.71  E-value=0.00059  Score=51.95  Aligned_cols=76  Identities=21%  Similarity=0.278  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHhc-------CC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++++|.|+ |++|..++..+...|++|+++.+++++.....+.+   +..   ...|..+.+.++++.       ++
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35789999997 99999999988888999999988876555443332   221   123555554443321       47


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|.++|.
T Consensus        85 id~vi~~ag~   94 (250)
T PRK12939         85 LDGLVNNAGI   94 (250)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.70  E-value=0.00018  Score=56.17  Aligned_cols=72  Identities=21%  Similarity=0.407  Sum_probs=52.4

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCC----CEEEcCCCHHHHHHhcCCccEEEEcCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA----DSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      ..+++|+|+|+|+.|.+++..+...|+ +|+++.++.++.+.+.+.++.    ..+....   .+.+....+|+|++|++
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~---~~~~~~~~aDiVInaTp  201 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGS---DLAAALAAADGLVHATP  201 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEecc---chHhhhCCCCEEEECCc
Confidence            356889999999999999999999998 899999998887777665531    1222111   12223357999999964

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.70  E-value=0.00035  Score=53.66  Aligned_cols=77  Identities=19%  Similarity=0.316  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC----EEEcCCCHHHHHHh-------cCCcc
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD----SFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~-------~~~~d  108 (220)
                      .++.++||.|+ |.+|..+++.+...|.+|+.+.++.+..+.+.+..+-.    ...|..+++.+.+.       .+++|
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   88 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLD   88 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            57789999997 99999999988889999999999876655554433211    22355555443322       24799


Q ss_pred             EEEEcCCCc
Q 027664          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~v~d~~g~~  117 (220)
                      +||.++|..
T Consensus        89 ~vi~~ag~~   97 (264)
T PRK12829         89 VLVNNAGIA   97 (264)
T ss_pred             EEEECCCCC
Confidence            999998854

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.69  E-value=0.00075  Score=52.52  Aligned_cols=94  Identities=18%  Similarity=0.222  Sum_probs=63.4

Q ss_pred             cchhhhhhhHHHhhcCCCCCCEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHH
Q 027664           24 LCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQA  102 (220)
Q Consensus        24 ~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~-~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  102 (220)
                      +++-......++..+.--.|++++|+|.|. +|..+++++...|++|+++.+...   .                  +.+
T Consensus       140 p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---~------------------L~~  198 (283)
T PRK14192        140 SATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---N------------------LPE  198 (283)
T ss_pred             CCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---h------------------HHH
Confidence            333333333444444335789999999976 999999999999998777765321   1                  122


Q ss_pred             hcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          103 AMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       103 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ....+|+++.|+|.+..+.  .+.++++-.++.+|...
T Consensus       199 ~~~~aDIvI~AtG~~~~v~--~~~lk~gavViDvg~n~  234 (283)
T PRK14192        199 LVKQADIIVGAVGKPELIK--KDWIKQGAVVVDAGFHP  234 (283)
T ss_pred             HhccCCEEEEccCCCCcCC--HHHcCCCCEEEEEEEee
Confidence            2247899999998775333  35688888888887543

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.00037  Score=53.25  Aligned_cols=75  Identities=21%  Similarity=0.296  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-CEEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+++++|.|+ |++|..+++.+...|++|++++++............. ....|..+.+.+.+..+++|++++++|.
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~   89 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGI   89 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence            4689999997 8999999998888999999998876222111111111 1234556666666666689999999975

>PLN00203 glutamyl-tRNA reductase

Probab=97.67  E-value=0.00064  Score=57.31  Aligned_cols=98  Identities=24%  Similarity=0.354  Sum_probs=65.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP-  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  119 (220)
                      .+.+|+|+|+|.+|.++++.+...|+ +|+++.++.++.+.+...++...+ .....+...+....+|+||.|++.+.. 
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i-~~~~~~dl~~al~~aDVVIsAT~s~~pv  343 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEI-IYKPLDEMLACAAEADVVFTSTSSETPL  343 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCce-EeecHhhHHHHHhcCCEEEEccCCCCCe
Confidence            36889999999999999999989998 899999998888887766642111 112222333444689999999977543 


Q ss_pred             -HHHHHhcccc----CC---EEEEeCCCC
Q 027664          120 -LMPLIGLLKS----QG---KLVLLGAPE  140 (220)
Q Consensus       120 -~~~~~~~l~~----~G---~~v~~g~~~  140 (220)
                       ....+..+.+    .|   .++.++.+.
T Consensus       344 I~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        344 FLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             eCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence             2333433322    12   466776654

>PRK06484 short chain dehydrogenase; Validated

Probab=97.67  E-value=0.00099  Score=56.58  Aligned_cols=99  Identities=20%  Similarity=0.316  Sum_probs=69.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ +++|..+++.+...|++|++++++.++.+.+.+.++..   ...|..+++.++++       .+.+|++
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l  347 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVL  347 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5788999997 99999999988889999999999887777776656542   22455555443332       2469999


Q ss_pred             EEcCCCcc---c-----------------------HHHHHhccccCCEEEEeCCCC
Q 027664          111 IDTVSAVH---P-----------------------LMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 ~d~~g~~~---~-----------------------~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      |+++|...   .                       .+.++..++++|+++.++...
T Consensus       348 i~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~  403 (520)
T PRK06484        348 VNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIA  403 (520)
T ss_pred             EECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            99987421   0                       122344556679999887654

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.67  E-value=0.00067  Score=51.67  Aligned_cols=97  Identities=21%  Similarity=0.295  Sum_probs=61.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-chHHHHHH---cCCC---EEEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVER---LGAD---SFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~~~~---~g~~---~~~~~~~~~~~~~~~-------~~  106 (220)
                      .+++++|.|+ |.+|..++..+...|.+|+++.++.+ +.+.+.+.   .+.+   ...|..+.+.+.+..       ++
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            4678999997 99999999888888999998887653 23333222   2322   123555555443221       36


Q ss_pred             ccEEEEcCCCcc-------------------cHHHHHhccccCCEEEEeCC
Q 027664          107 MDGIIDTVSAVH-------------------PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       107 ~d~v~d~~g~~~-------------------~~~~~~~~l~~~G~~v~~g~  138 (220)
                      +|+++.++|...                   .++.+...+.++|+++.++.
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            899998886421                   12344455556688887765

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.66  E-value=0.00048  Score=45.19  Aligned_cols=90  Identities=22%  Similarity=0.241  Sum_probs=61.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  121 (220)
                      .|.+|||+|+|.+|..-++.+...|++|++++...   ... +  +.-.... ..   .++...++++||-+.+.+..-+
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~-~--~~i~~~~-~~---~~~~l~~~~lV~~at~d~~~n~   75 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFS-E--GLIQLIR-RE---FEEDLDGADLVFAATDDPELNE   75 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHH-H--TSCEEEE-SS----GGGCTTESEEEE-SS-HHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhh-h--hHHHHHh-hh---HHHHHhhheEEEecCCCHHHHH
Confidence            57899999999999999999999999999999886   222 1  2111211 11   1233468999999999876555


Q ss_pred             HHHhccccCCEEEEeCCCCC
Q 027664          122 PLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       122 ~~~~~l~~~G~~v~~g~~~~  141 (220)
                      ......+..|.++.......
T Consensus        76 ~i~~~a~~~~i~vn~~D~p~   95 (103)
T PF13241_consen   76 AIYADARARGILVNVVDDPE   95 (103)
T ss_dssp             HHHHHHHHTTSEEEETT-CC
T ss_pred             HHHHHHhhCCEEEEECCCcC
Confidence            66667777899998866543

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.64  E-value=0.00021  Score=53.07  Aligned_cols=98  Identities=31%  Similarity=0.314  Sum_probs=62.1

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHH---HcCCCE-EEcCCCHHHHHHhcCCccEEE
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVE---RLGADS-FLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~---~~g~~~-~~~~~~~~~~~~~~~~~d~v~  111 (220)
                      ..+++|++||-+|+| .|..++-+++..|.  +|+.+...++-.+.+.+   .++.+. .+...+-..--.....||.++
T Consensus        68 L~l~pg~~VLeIGtG-sGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~  146 (209)
T PF01135_consen   68 LDLKPGDRVLEIGTG-SGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRII  146 (209)
T ss_dssp             TTC-TT-EEEEES-T-TSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEE
T ss_pred             HhcCCCCEEEEecCC-CcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEE
Confidence            348999999999987 48888888888775  68888888764444333   345432 222222111111123799999


Q ss_pred             EcCCCcccHHHHHhccccCCEEEEe
Q 027664          112 DTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       112 d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      -+.+-+......++.|+.||+++..
T Consensus       147 v~~a~~~ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  147 VTAAVPEIPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             ESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred             EeeccchHHHHHHHhcCCCcEEEEE
Confidence            8887776678899999999999974

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.64  E-value=0.00029  Score=55.33  Aligned_cols=75  Identities=21%  Similarity=0.351  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |++|..+++.+...|.+|++++++.++.+++.+.+   +.+.   ..|..+.+.+.+.       .+.+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999997 99999999888888999999999987665554432   3221   1344454433322       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus       119 d~li~~AG~  127 (293)
T PRK05866        119 DILINNAGR  127 (293)
T ss_pred             CEEEECCCC
Confidence            999999875

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.64  E-value=0.0013  Score=44.36  Aligned_cols=97  Identities=19%  Similarity=0.278  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccchHHHHH---HcCCC--EEEcCCCHHHHHHhcCCccEEEEc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~---~~g~~--~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      +.++++++-+|+|. |..+..+++..+ .+++.++.++...+.+.+   .++.+  .++..+-........+.+|+|+-.
T Consensus        17 ~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~   95 (124)
T TIGR02469        17 LRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG   95 (124)
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence            56788999999976 888889998875 599999998876555432   33432  122111111122223479999865


Q ss_pred             CCCc---ccHHHHHhccccCCEEEEeC
Q 027664          114 VSAV---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       114 ~g~~---~~~~~~~~~l~~~G~~v~~g  137 (220)
                      .+..   ..++.+.+.|+++|+++...
T Consensus        96 ~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        96 GSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            4332   24778899999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.64  E-value=6.9e-05  Score=58.04  Aligned_cols=97  Identities=30%  Similarity=0.302  Sum_probs=58.2

Q ss_pred             hhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCC--EEEcCCCHHHHHHhcCCccEE
Q 027664           36 FYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        36 ~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~--~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      ....+++|++||-+|+| -|..+..+++..|++|++++.+++..+.+.+   ..|..  ..+...+   .+++...||.|
T Consensus        56 ~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D---~~~~~~~fD~I  131 (273)
T PF02353_consen   56 EKLGLKPGDRVLDIGCG-WGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQD---YRDLPGKFDRI  131 (273)
T ss_dssp             TTTT--TT-EEEEES-T-TSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES----GGG---S-SEE
T ss_pred             HHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEee---ccccCCCCCEE
Confidence            33458999999999998 5788888999899999999999887665532   34431  1122222   22333488987


Q ss_pred             E-----EcCCCc---ccHHHHHhccccCCEEEEe
Q 027664          111 I-----DTVSAV---HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       111 ~-----d~~g~~---~~~~~~~~~l~~~G~~v~~  136 (220)
                      +     +.+|..   ..++.+.+.|+|||++++-
T Consensus       132 vSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  132 VSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             EEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             EEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            5     455543   2367888999999999754

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.63  E-value=0.00053  Score=53.15  Aligned_cols=72  Identities=19%  Similarity=0.231  Sum_probs=52.5

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHh-------cCCccEEEEcC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------MGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~-------~~~~d~v~d~~  114 (220)
                      +++||.|+ |++|..+++.+...|++|++++++.++...+ ...+...+ .|..+.+.+.+.       .+++|++++++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEAL-AAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            47899997 9999999998888899999999887665544 33454333 466665544332       13799999999


Q ss_pred             CC
Q 027664          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      |.
T Consensus        81 g~   82 (274)
T PRK05693         81 GY   82 (274)
T ss_pred             CC
Confidence            84

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.63  E-value=0.00077  Score=53.19  Aligned_cols=107  Identities=16%  Similarity=0.154  Sum_probs=73.5

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCccchHHHHHHcCCC--EEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERLGAD--SFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~-~~g~-~vi~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      ....+++|+|+|..|.+.++.+. ..+. +|.+..++.++.+.+++.++..  .+. .   +.+++...++|+|+.|++.
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~---~~~~~av~~aDiVitaT~s  198 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-P---LDGEAIPEAVDLVVTATTS  198 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-E---CCHHHHhhcCCEEEEccCC
Confidence            56788999999999999988775 4676 8999999988888877776421  111 1   1233344689999999987


Q ss_pred             cccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCC
Q 027664          117 VHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGR  154 (220)
Q Consensus       117 ~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      ...+-..  .+++|-++..+|.... ..+++.. ++.+.
T Consensus       199 ~~Pl~~~--~~~~g~hi~~iGs~~p~~~El~~~-~~~~a  234 (304)
T PRK07340        199 RTPVYPE--AARAGRLVVAVGAFTPDMAELAPR-TVRGS  234 (304)
T ss_pred             CCceeCc--cCCCCCEEEecCCCCCCcccCCHH-HHhhC
Confidence            6543333  3788889999987653 3455543 34443

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.63  E-value=0.0021  Score=51.02  Aligned_cols=95  Identities=25%  Similarity=0.252  Sum_probs=64.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCccchHHHHHHcC---CCEEEcCCCHHHHHHhcCCccEEEEcCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERLG---ADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~-~~g~-~vi~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      ....+++|+|+|.+|...+..+. ..+. +|.+..++.++.+.+++.+.   ..... ..+   ..+...+.|+|+.|++
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~-~~~---~~~av~~aDIVi~aT~  198 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV-VTD---LEAAVRQADIISCATL  198 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE-eCC---HHHHHhcCCEEEEeeC
Confidence            56789999999999999986444 3665 89999999888888877653   22111 112   3333457999999888


Q ss_pred             CcccHHHHHhccccCCEEEEeCCCC
Q 027664          116 AVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ....+- -.+.++++-.+..+|...
T Consensus       199 s~~pvl-~~~~l~~g~~i~~ig~~~  222 (314)
T PRK06141        199 STEPLV-RGEWLKPGTHLDLVGNFT  222 (314)
T ss_pred             CCCCEe-cHHHcCCCCEEEeeCCCC
Confidence            653311 124677777777776543

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.62  E-value=0.00049  Score=53.29  Aligned_cols=75  Identities=21%  Similarity=0.352  Sum_probs=54.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-CCE-EEcCCCHHHHHH-------hcCCccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADS-FLVSRDQDEMQA-------AMGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~-------~~~~~d~v~  111 (220)
                      .+.++||.|+ |++|..+++.+...|++|+++++++++...+.+.++ ... ..|..+.+.+.+       ..+++|+++
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLV   83 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3678999997 999999998888889999999998877666655555 322 235555543322       224799999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        84 ~~ag~   88 (273)
T PRK07825         84 NNAGV   88 (273)
T ss_pred             ECCCc
Confidence            99884

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.61  E-value=0.00051  Score=52.89  Aligned_cols=75  Identities=23%  Similarity=0.276  Sum_probs=54.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +++++||.|+ |++|..+++.+...|++|+++++++++.+.+.+.++..   ...|..+.+.+++.       .+.+|++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   84 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCF   84 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            5789999997 89999999988888999999999887776665555431   12344444333222       2479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        85 i~~ag~   90 (263)
T PRK06200         85 VGNAGI   90 (263)
T ss_pred             EECCCC
Confidence            999884

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.60  E-value=0.0011  Score=52.65  Aligned_cols=97  Identities=24%  Similarity=0.209  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHH---HcCCCEEE-cCCCHHHHHHhcCCccEEEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVE---RLGADSFL-VSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~---~~g~~~~~-~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .++++++||.+|+| .|..++.+++..+.  .|++++.+++..+.+.+   .+|.+.+. ...+........+.||+|+.
T Consensus        77 ~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~  155 (322)
T PRK13943         77 GLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFV  155 (322)
T ss_pred             CCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEE
Confidence            36889999999998 59999999998764  68999988865444332   35554322 11221111011136999999


Q ss_pred             cCCCcccHHHHHhccccCCEEEEe
Q 027664          113 TVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       113 ~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      +.+.........+.++++|+++..
T Consensus       156 ~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        156 TVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CCchHHhHHHHHHhcCCCCEEEEE
Confidence            888665567788999999998764

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.60  E-value=0.00046  Score=53.17  Aligned_cols=75  Identities=19%  Similarity=0.257  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC--E-EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD--S-FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~--~-~~~~~~~~~~~~~-------~~~~  107 (220)
                      +++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+   +..  . ..|..+.+.+.+.       .+++
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   88 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRL   88 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 89999999988889999999999876655544332   221  1 2455555444322       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus        89 d~vi~~Ag~   97 (263)
T PRK07814         89 DIVVNNVGG   97 (263)
T ss_pred             CEEEECCCC
Confidence            999999874

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.59  E-value=0.001  Score=52.13  Aligned_cols=98  Identities=26%  Similarity=0.231  Sum_probs=61.6

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHc---CCCEEEcCCCHHHHHHhcCCccEEEEcCC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL---GADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      ..++++||-+|+|. |..++.+++ .|+ +|++++.++...+.+.+..   +....+.....+......++||+|+....
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~  234 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL  234 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC
Confidence            36789999999987 877776665 566 8999999987665554332   22111110001111112247999986443


Q ss_pred             Cc---ccHHHHHhccccCCEEEEeCCC
Q 027664          116 AV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       116 ~~---~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ..   ..+..+.+.|+++|.++..|..
T Consensus       235 ~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       235 AEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            32   2356678999999999988754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.59  E-value=0.00079  Score=53.71  Aligned_cols=95  Identities=17%  Similarity=0.253  Sum_probs=65.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCccchHHHHHHc----CCCEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERL----GADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~-~~g~-~vi~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      +...+++|+|+|..|.+.+..+. ..+. +|.+..++.++.+.+++.+    |.+ +....   .+++.....|+|+.|+
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~~---~~~~av~~aDiVvtaT  202 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAAT---DPRAAMSGADIIVTTT  202 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEeC---CHHHHhccCCEEEEec
Confidence            45678999999999988887665 5786 8999999988877776655    332 21122   2334445899999999


Q ss_pred             CCcccHHHHHhccccCCEEEEeCCCC
Q 027664          115 SAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       115 g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +....+ ...+.++++-.+..+|...
T Consensus       203 ~s~~p~-i~~~~l~~g~~i~~vg~~~  227 (326)
T TIGR02992       203 PSETPI-LHAEWLEPGQHVTAMGSDA  227 (326)
T ss_pred             CCCCcE-ecHHHcCCCcEEEeeCCCC
Confidence            875422 1123577777877777543

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.58  E-value=0.00073  Score=52.67  Aligned_cols=75  Identities=20%  Similarity=0.331  Sum_probs=51.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcC----CCEEEcCCCHHHHHHhcCCccEEEEcCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG----ADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      ..+++++|+|+|+.|.+++..+...|+ +++++.++.++.+.+++.+.    ...+ ...+..........+|+|++|++
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~-~~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAV-VGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceE-EecCHhHHHHHHhhcCEEEEcCC
Confidence            357899999999999999988888998 88899999888777766543    1111 11111111222346899999986


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      -
T Consensus       204 ~  204 (283)
T PRK14027        204 M  204 (283)
T ss_pred             C
Confidence            4

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.58  E-value=0.0017  Score=49.70  Aligned_cols=75  Identities=21%  Similarity=0.317  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|.+|+++++++++.+.+.+.+   +..   ...|..+.+.+.+.       .+++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999997 99999999888888999999999887665554433   322   22355555444332       2379


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.++|.
T Consensus        83 d~vi~~a~~   91 (258)
T PRK12429         83 DILVNNAGI   91 (258)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.58  E-value=0.00077  Score=51.32  Aligned_cols=75  Identities=21%  Similarity=0.336  Sum_probs=54.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHH-------hcCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQA-------AMGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~-------~~~~~d~v  110 (220)
                      ++++++|.|+ |.+|..+++.+...|++|++++++.++.....++++....   .|..+.+.+..       ..+++|++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAV   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4678999997 9999999998888999999999887666666556664321   24444333222       22479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      |.++|.
T Consensus        85 i~~ag~   90 (249)
T PRK06500         85 FINAGV   90 (249)
T ss_pred             EECCCC
Confidence            999874

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.57  E-value=0.0017  Score=47.96  Aligned_cols=80  Identities=21%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhc-CCccEEEEcCCCccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-GTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~d~v~d~~g~~~~  119 (220)
                      -.|++++|.|.|.+|..+++.+...|++|++++.+.++.+++.+.+++.. ++..      ++. ..+|+++-|+.+...
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~-v~~~------~l~~~~~Dv~vp~A~~~~I   98 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATV-VAPE------EIYSVDADVFAPCALGGVI   98 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEE-Ecch------hhccccCCEEEeccccccc
Confidence            46789999999999999999999999999999888877777766666542 2321      111 257888866654433


Q ss_pred             HHHHHhcc
Q 027664          120 LMPLIGLL  127 (220)
Q Consensus       120 ~~~~~~~l  127 (220)
                      -...+..+
T Consensus        99 ~~~~~~~l  106 (200)
T cd01075          99 NDDTIPQL  106 (200)
T ss_pred             CHHHHHHc
Confidence            34444445

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.57  E-value=0.0011  Score=51.82  Aligned_cols=86  Identities=15%  Similarity=0.249  Sum_probs=53.1

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCcc---chHHHHHHcCCC-----EEEcCCCHHHHH
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS---KKSEAVERLGAD-----SFLVSRDQDEMQ  101 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~---~~~~~~~~~g~~-----~~~~~~~~~~~~  101 (220)
                      ..++...+.-..+++++|+|+|+.+.+++..+...|+ +++++.++.+   +.+.+++.++..     .+....+.+.+.
T Consensus       112 ~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~  191 (288)
T PRK12749        112 IRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFA  191 (288)
T ss_pred             HHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhh
Confidence            3445433322367899999999889887776777898 8999999853   555565555321     111111111122


Q ss_pred             HhcCCccEEEEcCCC
Q 027664          102 AAMGTMDGIIDTVSA  116 (220)
Q Consensus       102 ~~~~~~d~v~d~~g~  116 (220)
                      +....+|+|++|+.-
T Consensus       192 ~~~~~aDivINaTp~  206 (288)
T PRK12749        192 EALASADILTNGTKV  206 (288)
T ss_pred             hhcccCCEEEECCCC
Confidence            333479999999864

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.56  E-value=0.00022  Score=51.29  Aligned_cols=97  Identities=22%  Similarity=0.279  Sum_probs=64.7

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEc-CC-----------------C--HHHHHH
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV-SR-----------------D--QDEMQA  102 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~-~~-----------------~--~~~~~~  102 (220)
                      ..+|+|.|+|.+|+.++.+++.+|+++++.+...++..+. +.++...+.. +.                 .  ...+.+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~   98 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL-ESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE   98 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH-HHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh-hcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence            3789999999999999999999999999999998766655 4555533322 10                 1  112333


Q ss_pred             hcCCccEEEEcC--CCcc----cHHHHHhccccCCEEEEeCCCC
Q 027664          103 AMGTMDGIIDTV--SAVH----PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       103 ~~~~~d~v~d~~--g~~~----~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ....+|+++-+.  ++..    ..++.++.|+++..++.+....
T Consensus        99 ~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~  142 (168)
T PF01262_consen   99 FIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ  142 (168)
T ss_dssp             HHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred             HHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence            334789998543  2211    2367788999999999887644

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.56  E-value=0.002  Score=51.16  Aligned_cols=136  Identities=24%  Similarity=0.299  Sum_probs=88.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcC-CCccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTV-SAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~-g~~~~  119 (220)
                      -.|+++-|+|-|.+|+++++.++.+|.+|+..+++..  .+..+.+++.++    +   +.++....|++.-.+ .++++
T Consensus       144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~~~~y~----~---l~ell~~sDii~l~~Plt~~T  214 (324)
T COG1052         144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKELGARYV----D---LDELLAESDIISLHCPLTPET  214 (324)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhcCceec----c---HHHHHHhCCEEEEeCCCChHH
Confidence            3589999999999999999999999999999998874  333344555443    2   334444678876544 44432


Q ss_pred             H----HHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccH--
Q 027664          120 L----MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYV--  192 (220)
Q Consensus       120 ~----~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~--  192 (220)
                      .    ...+..|++++.+|.++-..                        .-+-+.+++++++|++.-.- ++|..|..  
T Consensus       215 ~hLin~~~l~~mk~ga~lVNtaRG~------------------------~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~  270 (324)
T COG1052         215 RHLINAEELAKMKPGAILVNTARGG------------------------LVDEQALIDALKSGKIAGAGLDVFENEPALF  270 (324)
T ss_pred             hhhcCHHHHHhCCCCeEEEECCCcc------------------------ccCHHHHHHHHHhCCcceEEeeecCCCCCCC
Confidence            2    35678899999999886422                        12456777777888777543 66665554  


Q ss_pred             HHHHHHHHcCCCceeEEEEe
Q 027664          193 NTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       193 ~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +..+..+.+.   .++++.+
T Consensus       271 d~~l~~l~~~---~~vvltP  287 (324)
T COG1052         271 DHPLLRLDNF---PNVVLTP  287 (324)
T ss_pred             ChhHhhccCC---CCEEEcc
Confidence            2344333322   3455554

>PRK07574 formate dehydrogenase; Provisional

Probab=97.56  E-value=0.0031  Score=51.28  Aligned_cols=90  Identities=20%  Similarity=0.259  Sum_probs=64.4

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL-  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~-  120 (220)
                      .|++|.|+|.|.+|..+++.++.+|.+|++.+++.... ...+.+++...   .+   ++++....|+|+-++...... 
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~-~~~~~~g~~~~---~~---l~ell~~aDvV~l~lPlt~~T~  263 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPE-EVEQELGLTYH---VS---FDSLVSVCDVVTIHCPLHPETE  263 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCch-hhHhhcCceec---CC---HHHHhhcCCEEEEcCCCCHHHH
Confidence            56789999999999999999999999999999875332 22234454321   12   445556789999888753222 


Q ss_pred             ----HHHHhccccCCEEEEeCC
Q 027664          121 ----MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ----~~~~~~l~~~G~~v~~g~  138 (220)
                          ...+..|+++..++.++-
T Consensus       264 ~li~~~~l~~mk~ga~lIN~aR  285 (385)
T PRK07574        264 HLFDADVLSRMKRGSYLVNTAR  285 (385)
T ss_pred             HHhCHHHHhcCCCCcEEEECCC
Confidence                346778888888888764

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.56  E-value=0.00054  Score=52.65  Aligned_cols=75  Identities=20%  Similarity=0.277  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-----CCC---EEEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GAD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-----g~~---~~~~~~~~~~~~~~-------~~  105 (220)
                      .+++++|.|+ |++|..+++.+...|++|+.+++++++.++..+.+     +..   ...|..+++.+.++       .+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4688999997 99999999988889999999999877666554443     211   12345554433322       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|+++.++|.
T Consensus        86 ~id~li~~ag~   96 (260)
T PRK07063         86 PLDVLVNNAGI   96 (260)
T ss_pred             CCcEEEECCCc
Confidence            79999999884

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.00058  Score=52.62  Aligned_cols=75  Identities=21%  Similarity=0.298  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----C-CC---EEEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----G-AD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g-~~---~~~~~~~~~~~~~~-------~~  105 (220)
                      .+++++|.|+ +++|..+++.+...|++|+.++++.++.+...+.+    + ..   ...|..+.+.++++       .+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            5789999997 89999999988889999999999877655543332    1 11   12355565444332       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus        87 ~id~li~~Ag~   97 (265)
T PRK07062         87 GVDMLVNNAGQ   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.55  E-value=0.00032  Score=51.98  Aligned_cols=34  Identities=29%  Similarity=0.581  Sum_probs=30.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      .+.+|+|+|+|++|..+++.+...|+ ++++++..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            45789999999999999999999999 88888866

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.54  E-value=0.00083  Score=51.71  Aligned_cols=75  Identities=27%  Similarity=0.285  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHH----Hh---cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQ----AA---MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~----~~---~~~~d~v  110 (220)
                      ++++++|.|+ |++|..+++.+...|++|++++++.++.+++....+..   ...|..+.+.+.    +.   .+.+|++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   83 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCL   83 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4789999997 89999999988889999999998877666654443321   113445543332    22   2478999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      +++.|.
T Consensus        84 i~~Ag~   89 (262)
T TIGR03325        84 IPNAGI   89 (262)
T ss_pred             EECCCC
Confidence            999873

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.54  E-value=0.00089  Score=54.86  Aligned_cols=75  Identities=19%  Similarity=0.251  Sum_probs=54.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC--C-CEEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG--A-DSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g--~-~~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+++++|.|+ |++|..+++.+...|++|+++++++++........+  . ....|..+.+.+.+..+++|++|.++|.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAGi  255 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHGI  255 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCCc
Confidence            5789999997 999999998888889999999887665433322211  1 1224566666676666789999998874

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.002  Score=49.89  Aligned_cols=72  Identities=22%  Similarity=0.309  Sum_probs=50.2

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC----EEEcCCCHHHHHHh-------cCCccE
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD----SFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~----~~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      +++|.|+ |++|..+++.+...|++|+++.+++++.+...++   .+..    ...|..+.+.+.+.       .+++|+
T Consensus         2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   81 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDV   81 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            6899997 9999999998888899999998887665544333   2322    22455555433322       236999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus        82 lv~~ag~   88 (272)
T PRK07832         82 VMNIAGI   88 (272)
T ss_pred             EEECCCC
Confidence            9999985

>PRK06196 oxidoreductase; Provisional

Probab=97.53  E-value=0.00077  Score=53.45  Aligned_cols=75  Identities=23%  Similarity=0.303  Sum_probs=54.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-CCE-EEcCCCHHHHHHhc-------CCccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADS-FLVSRDQDEMQAAM-------GTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~~-------~~~d~v~  111 (220)
                      .+++++|.|+ |++|..++..+...|++|++++++.++.++..+.+. ... ..|..+.+.++++.       +++|++|
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li  104 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILI  104 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            5689999997 999999998888889999999998776665544432 221 23555555443322       3799999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus       105 ~nAg~  109 (315)
T PRK06196        105 NNAGV  109 (315)
T ss_pred             ECCCC
Confidence            99874

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.52  E-value=0.00051  Score=59.82  Aligned_cols=76  Identities=22%  Similarity=0.316  Sum_probs=56.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc--------------------chHHHHHHcCCCEEEcCCCH-H-H
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS--------------------KKSEAVERLGADSFLVSRDQ-D-E   99 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~--------------------~~~~~~~~~g~~~~~~~~~~-~-~   99 (220)
                      .+++|+|+|+|+.|+.++..++..|.+|+++...+.                    +..+..+.+|++..++..-. + .
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~  388 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT  388 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence            489999999999999999999999999998887653                    12234467787766554321 1 2


Q ss_pred             HHHhcCCccEEEEcCCCc
Q 027664          100 MQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~  117 (220)
                      +..+..++|.||.++|..
T Consensus       389 ~~~l~~~~DaV~latGa~  406 (639)
T PRK12809        389 FSDLTSEYDAVFIGVGTY  406 (639)
T ss_pred             HHHHHhcCCEEEEeCCCC
Confidence            334445899999999975

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.51  E-value=0.0026  Score=48.00  Aligned_cols=102  Identities=15%  Similarity=0.225  Sum_probs=63.5

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe---EEEEeCC----ccch-------HHHHHHcCCCEEEcCCC
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK---VTVISTS----PSKK-------SEAVERLGADSFLVSRD   96 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~---vi~~~~~----~~~~-------~~~~~~~g~~~~~~~~~   96 (220)
                      ..+++..+.--.+.+++|+|+|+.|..++..+...|++   +++++++    .++.       +.+.+.++... .+   
T Consensus        13 ~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~~---   88 (226)
T cd05311          13 LNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-TG---   88 (226)
T ss_pred             HHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-cc---
Confidence            34455544224678999999999999999888888985   8888887    3332       23334433211 11   


Q ss_pred             HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeC
Q 027664           97 QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus        97 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      . .+.+...++|++|++++....-...++.+.+...++.+.
T Consensus        89 ~-~l~~~l~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls  128 (226)
T cd05311          89 G-TLKEALKGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA  128 (226)
T ss_pred             C-CHHHHHhcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC
Confidence            1 122233469999999984322245667777776666554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.50  E-value=0.00075  Score=51.41  Aligned_cols=75  Identities=19%  Similarity=0.278  Sum_probs=53.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC--C---CEEEcCCCHHHHHHh-------cCCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG--A---DSFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g--~---~~~~~~~~~~~~~~~-------~~~~d  108 (220)
                      .++++||.|+ |.+|..+++.+...|.+|++++++.++.+.+.+.+.  .   -...|..+.+.++..       .+.+|
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   83 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD   83 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4678999997 999999998888889999999999876665544443  1   112344554444332       23789


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|.++|.
T Consensus        84 ~vi~~ag~   91 (251)
T PRK07231         84 ILVNNAGT   91 (251)
T ss_pred             EEEECCCC
Confidence            99999875

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.001  Score=51.74  Aligned_cols=75  Identities=19%  Similarity=0.240  Sum_probs=53.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHhc-------CCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+..+..   ...|..+.+.+.+..       +++|++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~v   82 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVL   82 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            3578999997 99999999988888999999999887665554433321   123555554433321       368999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        83 v~~ag~   88 (277)
T PRK06180         83 VNNAGY   88 (277)
T ss_pred             EECCCc
Confidence            999886

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.50  E-value=0.0011  Score=55.83  Aligned_cols=72  Identities=18%  Similarity=0.245  Sum_probs=53.5

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCC-HHHHHHhcCCccEEEEcCCCc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD-QDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      +.++++|+|+|.|.+|++++++++..|++|++.+..+.+...+ +++|+..+ .... .+.+    ..+|+|+.+.|-+
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l-~~~g~~~~-~~~~~~~~l----~~~D~VV~SpGi~   81 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPH-AERGVATV-STSDAVQQI----ADYALVVTSPGFR   81 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HhCCCEEE-cCcchHhHh----hcCCEEEECCCCC
Confidence            4578999999999999999999999999999988776555443 55777443 2222 2222    3679999998875

>PLN03139 formate dehydrogenase; Provisional

Probab=97.49  E-value=0.003  Score=51.34  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=63.5

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL-  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~-  120 (220)
                      .|++|.|+|.|.+|..+++.++.+|.+|++.+++....+ ..+..|+..+   .   .+.++....|+|+-++...... 
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~-~~~~~g~~~~---~---~l~ell~~sDvV~l~lPlt~~T~  270 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE-LEKETGAKFE---E---DLDAMLPKCDVVVINTPLTEKTR  270 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh-hHhhcCceec---C---CHHHHHhhCCEEEEeCCCCHHHH
Confidence            678999999999999999999999999999887653322 2234554321   1   2444445689998888753211 


Q ss_pred             ----HHHHhccccCCEEEEeCC
Q 027664          121 ----MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ----~~~~~~l~~~G~~v~~g~  138 (220)
                          ...+..|+++..++.++-
T Consensus       271 ~li~~~~l~~mk~ga~lIN~aR  292 (386)
T PLN03139        271 GMFNKERIAKMKKGVLIVNNAR  292 (386)
T ss_pred             HHhCHHHHhhCCCCeEEEECCC
Confidence                346778888888888764

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.00056  Score=52.78  Aligned_cols=76  Identities=29%  Similarity=0.348  Sum_probs=52.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      .+++++||.|+ |++|..+++.+...|++|+.++++.++.....+.+   +..   ..+|..+++.+.+.       .++
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~   86 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP   86 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999997 99999999988889999999998876554443332   221   12355555444332       136


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|.+.|.
T Consensus        87 iD~vi~~ag~   96 (264)
T PRK07576         87 IDVLVSGAAG   96 (264)
T ss_pred             CCEEEECCCC
Confidence            8999998863

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.00073  Score=51.73  Aligned_cols=75  Identities=12%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|+++.++.++.+.+.+.+   +.+   ...|..+.+.++++       .+++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4789999997 99999999988889999999999877665554433   221   12355555443332       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |+++.+.|.
T Consensus        88 d~lv~~ag~   96 (253)
T PRK05867         88 DIAVCNAGI   96 (253)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.49  E-value=0.0023  Score=50.70  Aligned_cols=88  Identities=20%  Similarity=0.310  Sum_probs=64.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL-  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~-  120 (220)
                      .|++|.|+|.|.+|..+++.++.+|.+|++.+++.++..      +.....   ....+.++....|+|+.++...... 
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~------~~~~~~---~~~~l~e~l~~aDvvv~~lPlt~~T~  205 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP------GVQSFA---GREELSAFLSQTRVLINLLPNTPETV  205 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC------Cceeec---ccccHHHHHhcCCEEEECCCCCHHHH
Confidence            678999999999999999999999999999987653221      222221   1223555666889999998754321 


Q ss_pred             ----HHHHhccccCCEEEEeCC
Q 027664          121 ----MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ----~~~~~~l~~~G~~v~~g~  138 (220)
                          ...++.|+++..++.+|-
T Consensus       206 ~li~~~~l~~mk~ga~lIN~aR  227 (312)
T PRK15469        206 GIINQQLLEQLPDGAYLLNLAR  227 (312)
T ss_pred             HHhHHHHHhcCCCCcEEEECCC
Confidence                346788999998888864

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.00074  Score=51.73  Aligned_cols=76  Identities=25%  Similarity=0.300  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC---CEEEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA---DSFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~---~~~~~~~~~~~~~~~-------~~~  106 (220)
                      ..+++++|.|+ |.+|..+++.+...|++|+++.++.++.+.+...+   +.   ....|..+.+.+++.       .+.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            45789999997 99999999988888999999999887665554332   21   122344454433332       237


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        87 ~d~li~~ag~   96 (258)
T PRK06949         87 IDILVNNSGV   96 (258)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.00075  Score=51.01  Aligned_cols=75  Identities=24%  Similarity=0.304  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC----CCE-EEcCCCHHHHHHh-------cCCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----ADS-FLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g----~~~-~~~~~~~~~~~~~-------~~~~d  108 (220)
                      .+.+++|.|+ |.+|..+++.+...|++|+++++++++..++.+.+.    ... ..|..+.+.+.+.       .+++|
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD   84 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4688999997 999999998887789999999988776655555443    111 1244444433222       13799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|++.|.
T Consensus        85 ~vi~~ag~   92 (237)
T PRK07326         85 VLIANAGV   92 (237)
T ss_pred             EEEECCCC
Confidence            99999875

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.47  E-value=0.00092  Score=51.88  Aligned_cols=103  Identities=21%  Similarity=0.128  Sum_probs=64.9

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC---CEEEcCCCHHHHHHhcCCc
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---DSFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~  107 (220)
                      ..++........+++++|+|+|++|.+++..+...|.+|+++.++.++.+.+.+.++.   ...+..   +.  .....+
T Consensus       105 ~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~---~~--~~~~~~  179 (270)
T TIGR00507       105 VSDLERLIPLRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSM---DE--LPLHRV  179 (270)
T ss_pred             HHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEech---hh--hcccCc
Confidence            3444443323457899999999999999988888899999999988777666655432   122211   11  112368


Q ss_pred             cEEEEcCCCcc--cHH---HHHhccccCCEEEEeCC
Q 027664          108 DGIIDTVSAVH--PLM---PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       108 d~v~d~~g~~~--~~~---~~~~~l~~~G~~v~~g~  138 (220)
                      |++++|++...  ...   .....++++..++.+..
T Consensus       180 DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y  215 (270)
T TIGR00507       180 DLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVY  215 (270)
T ss_pred             cEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEecc
Confidence            99999998641  111   11344666666666643

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.47  E-value=0.00038  Score=51.51  Aligned_cols=114  Identities=13%  Similarity=0.042  Sum_probs=66.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccc-hHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      .|.+|||+|+|.+|...+..+...|++|+++.+...+ ...+.+. +. ..+.....  ......++|+||-|++.++ .
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~-~~-i~~~~~~~--~~~~l~~adlViaaT~d~e-l   83 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEE-GK-IRWKQKEF--EPSDIVDAFLVIAATNDPR-V   83 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhC-CC-EEEEecCC--ChhhcCCceEEEEcCCCHH-H
Confidence            5789999999999999998888899999988764321 2222221 21 11211111  1122347899999999885 4


Q ss_pred             HHHHhccccCCEEEEeCCCCCCCCCCchhhhcC-CeEEEEE
Q 027664          121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG-RKIVGGS  160 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~  160 (220)
                      +..+...+..+.++..........|..+..+.+ .+++.-+
T Consensus        84 N~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIs  124 (202)
T PRK06718         84 NEQVKEDLPENALFNVITDAESGNVVFPSALHRGKLTISVS  124 (202)
T ss_pred             HHHHHHHHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEE
Confidence            444443334456666654443344444433333 4554443

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.47  E-value=0.00058  Score=57.21  Aligned_cols=77  Identities=22%  Similarity=0.382  Sum_probs=54.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc--------------------chHHHHHHcCCCEEEcCCCH-H-H
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS--------------------KKSEAVERLGADSFLVSRDQ-D-E   99 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~--------------------~~~~~~~~~g~~~~~~~~~~-~-~   99 (220)
                      .+++|+|+|+|+.|+.++..++..|.+|++....+.                    +..+..+++|++..++.... + .
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~  219 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS  219 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence            578999999999999999999999999988876542                    12233467887765543221 1 2


Q ss_pred             HHHhcCCccEEEEcCCCcc
Q 027664          100 MQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~  118 (220)
                      +.....++|.||.++|...
T Consensus       220 ~~~~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       220 LDDLLEDYDAVFLGVGTYR  238 (467)
T ss_pred             HHHHHhcCCEEEEEeCCCC
Confidence            2333347999999999853

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK05717 oxidoreductase; Validated

Probab=97.47  E-value=0.0012  Score=50.58  Aligned_cols=76  Identities=20%  Similarity=0.312  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHH----hc---CCccE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQA----AM---GTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~----~~---~~~d~  109 (220)
                      ..|++++|.|+ |.+|..++..+...|++|++++++..+.....+.++..   ...|..+.+.+.+    ..   +.+|+
T Consensus         8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   87 (255)
T PRK05717          8 HNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA   87 (255)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            35788999997 99999999888888999999988766555554555432   1234555443322    22   36899


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +|.++|.
T Consensus        88 li~~ag~   94 (255)
T PRK05717         88 LVCNAAI   94 (255)
T ss_pred             EEECCCc
Confidence            9999874

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.001  Score=50.94  Aligned_cols=74  Identities=15%  Similarity=0.127  Sum_probs=53.0

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCC---EEEcCCCHHHHHHhcC-CccEEEEcC
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAAMG-TMDGIIDTV  114 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~~~~~-~~d~v~d~~  114 (220)
                      ++++||.|+ |.+|..+++.+...|++|++++++..+...+..   ..+..   ...|..+.+.+.+... ++|++|.++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a   81 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA   81 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence            467999997 999999999998999999999988655444322   22221   1235566666655544 899999998


Q ss_pred             CC
Q 027664          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      |.
T Consensus        82 g~   83 (257)
T PRK09291         82 GI   83 (257)
T ss_pred             Cc
Confidence            74

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=97.46  E-value=0.0011  Score=51.28  Aligned_cols=80  Identities=18%  Similarity=0.268  Sum_probs=56.3

Q ss_pred             hhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCC
Q 027664           28 ITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGT  106 (220)
Q Consensus        28 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  106 (220)
                      .....+++..+ ...+++++|+|+|+.+.+++..+...|+ +|+++.++.++.+.+++.++...    .  +...  ...
T Consensus       108 ~Gf~~~L~~~~-~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~----~--~~~~--~~~  178 (272)
T PRK12550        108 IAIAKLLASYQ-VPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEW----R--PDLG--GIE  178 (272)
T ss_pred             HHHHHHHHhcC-CCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcc----h--hhcc--ccc
Confidence            33344555443 3456789999999999999998888998 79999999888777766664221    1  1110  135


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++|++-
T Consensus       179 ~dlvINaTp~  188 (272)
T PRK12550        179 ADILVNVTPI  188 (272)
T ss_pred             CCEEEECCcc
Confidence            8999999863

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.46  E-value=0.00091  Score=51.21  Aligned_cols=75  Identities=25%  Similarity=0.388  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHhc-------CCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++.+++++...+.+.+   |...   ..|..+.+.++++.       +.+
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   88 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI   88 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            5789999997 99999999888888999999998876554443332   2211   13555554444332       369


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.++|.
T Consensus        89 d~li~~ag~   97 (255)
T PRK07523         89 DILVNNAGM   97 (255)
T ss_pred             CEEEECCCC
Confidence            999999985

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.46  E-value=0.0014  Score=50.74  Aligned_cols=95  Identities=19%  Similarity=0.202  Sum_probs=71.1

Q ss_pred             cccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH
Q 027664           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  100 (220)
                      ..||+..+....+...+---.|++++|+|- ..+|.-++++++..|+.|+++...-.                     .+
T Consensus       138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~---------------------~l  196 (285)
T PRK10792        138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK---------------------NL  196 (285)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC---------------------CH
Confidence            467777777777776653246999999997 56999999999999999988765421                     13


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ++....+|+++.++|.+..+..  +.++++-.++.+|..
T Consensus       197 ~~~~~~ADIvi~avG~p~~v~~--~~vk~gavVIDvGin  233 (285)
T PRK10792        197 RHHVRNADLLVVAVGKPGFIPG--EWIKPGAIVIDVGIN  233 (285)
T ss_pred             HHHHhhCCEEEEcCCCcccccH--HHcCCCcEEEEcccc
Confidence            3444578999999998864433  678889899898854

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.00075  Score=53.52  Aligned_cols=75  Identities=21%  Similarity=0.213  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-----CCC---EEEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GAD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-----g~~---~~~~~~~~~~~~~~-------~~  105 (220)
                      .|++++|.|+ +++|..+++.+...|++|+.++++.++.+++.+++     +..   ...|..+.+.++++       .+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            4689999997 89999999888888999999999887665554433     111   12355565444332       23


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      .+|++|+++|.
T Consensus        93 ~iD~li~nAG~  103 (313)
T PRK05854         93 PIHLLINNAGV  103 (313)
T ss_pred             CccEEEECCcc
Confidence            69999998874

>PRK06194 hypothetical protein; Provisional

Probab=97.46  E-value=0.00089  Score=52.22  Aligned_cols=75  Identities=20%  Similarity=0.343  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHhc-------CCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~-------~~~  107 (220)
                      .+.++||.|+ |++|..+++.+...|++|++++++.++.++..+.+   +...   ..|..+.+.+.++.       +++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999997 99999999888888999999998876555544333   3221   23455554443332       368


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.++|.
T Consensus        85 d~vi~~Ag~   93 (287)
T PRK06194         85 HLLFNNAGV   93 (287)
T ss_pred             CEEEECCCC
Confidence            999999986

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.0015  Score=50.25  Aligned_cols=77  Identities=19%  Similarity=0.322  Sum_probs=53.6

Q ss_pred             CCCCCEEEEEcc-c-hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH----cCCCEE----EcCCCHHHHHHh------
Q 027664           40 DKPGMHVGVVGL-G-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LGADSF----LVSRDQDEMQAA------  103 (220)
Q Consensus        40 ~~~~~~vlI~G~-g-~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~----~g~~~~----~~~~~~~~~~~~------  103 (220)
                      +..+++++|.|+ | ++|..+++.+...|++|++++++.++.+...+.    ++...+    .|..+.+.+.++      
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            456789999996 6 799999999999999999988877655444332    342222    355555433322      


Q ss_pred             -cCCccEEEEcCCC
Q 027664          104 -MGTMDGIIDTVSA  116 (220)
Q Consensus       104 -~~~~d~v~d~~g~  116 (220)
                       .+.+|++|+++|.
T Consensus        94 ~~g~id~li~~ag~  107 (262)
T PRK07831         94 RLGRLDVLVNNAGL  107 (262)
T ss_pred             HcCCCCEEEECCCC
Confidence             2478999999984

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.45  E-value=0.0014  Score=49.64  Aligned_cols=74  Identities=16%  Similarity=0.119  Sum_probs=51.1

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHH----h---cCCccEEEEc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQA----A---MGTMDGIIDT  113 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~----~---~~~~d~v~d~  113 (220)
                      ++++||.|+ |++|..+++.+...|++|+++++++++.....+..+... ..|..+.+.+++    .   .+++|+++.+
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~   81 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHN   81 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEEC
Confidence            468999997 899999999888889999999988654433334455422 234445443322    2   2369999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        82 ag~   84 (236)
T PRK06483         82 ASD   84 (236)
T ss_pred             Ccc
Confidence            874

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.44  E-value=0.0026  Score=47.54  Aligned_cols=98  Identities=30%  Similarity=0.301  Sum_probs=63.8

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHHH---cCCCE--EEcCCCHHHHHHhcCCccE
Q 027664           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVER---LGADS--FLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~---~g~~~--~~~~~~~~~~~~~~~~~d~  109 (220)
                      ...++++++||-+|+|. |..+..+++..+  .+|+.++.+++..+.+.+.   +|.+.  ++..+-.+.. ...+.||.
T Consensus        71 ~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~~fD~  148 (212)
T PRK13942         71 LLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENAPYDR  148 (212)
T ss_pred             HcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCCCcCE
Confidence            33478999999999874 777778887765  4899999998765544333   34321  1211111111 01137999


Q ss_pred             EEEcCCCcccHHHHHhccccCCEEEEe
Q 027664          110 IIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       110 v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      |+-............+.|++||+++..
T Consensus       149 I~~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        149 IYVTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             EEECCCcccchHHHHHhhCCCcEEEEE
Confidence            875544454677889999999998875

>PRK06484 short chain dehydrogenase; Validated

Probab=97.44  E-value=0.001  Score=56.47  Aligned_cols=76  Identities=22%  Similarity=0.377  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHh-------cCCccE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      .+++++||.|+ +++|..+++.+...|++|+.++++.++.+.+.++++..   ...|..+++.++++       .+++|+
T Consensus         3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            35789999997 89999999988889999999999888777776666643   23455565444332       247999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus        83 li~nag~   89 (520)
T PRK06484         83 LVNNAGV   89 (520)
T ss_pred             EEECCCc
Confidence            9999874

>PLN02253 xanthoxin dehydrogenase

Probab=97.43  E-value=0.0013  Score=51.14  Aligned_cols=75  Identities=21%  Similarity=0.311  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC----C-EEEcCCCHHHHHHhc-------CCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----D-SFLVSRDQDEMQAAM-------GTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~----~-~~~~~~~~~~~~~~~-------~~~d  108 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.+..+.+.+.++.    . ...|..+.+.++++.       +++|
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id   96 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLD   96 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            4688999997 9999999988888899999998876655555444431    1 124555554443322       3799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++++++|.
T Consensus        97 ~li~~Ag~  104 (280)
T PLN02253         97 IMVNNAGL  104 (280)
T ss_pred             EEEECCCc
Confidence            99999874

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.43  E-value=0.0023  Score=49.66  Aligned_cols=96  Identities=19%  Similarity=0.259  Sum_probs=70.4

Q ss_pred             cccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH
Q 027664           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  100 (220)
                      ..||+.......++..+---.|++++|+|. +.+|.-++.++...|++|+++.....                     .+
T Consensus       137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~---------------------~l  195 (285)
T PRK14189        137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR---------------------DL  195 (285)
T ss_pred             CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC---------------------CH
Confidence            467776666666666553357999999997 55699999999999999987543211                     13


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .+.....|+++-++|.+..+..  +.++++..++.+|...
T Consensus       196 ~~~~~~ADIVV~avG~~~~i~~--~~ik~gavVIDVGin~  233 (285)
T PRK14189        196 AAHTRQADIVVAAVGKRNVLTA--DMVKPGATVIDVGMNR  233 (285)
T ss_pred             HHHhhhCCEEEEcCCCcCccCH--HHcCCCCEEEEccccc
Confidence            3444578999999998865443  7899999999998643

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.00087  Score=51.33  Aligned_cols=76  Identities=21%  Similarity=0.308  Sum_probs=53.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      ..+++++|.|+ |++|..+++.+...|.+|+++++++++.+.+.+.+   +..   ...|..+.+.++..       .+.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR   82 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            45788999997 99999999988889999999998876655554433   221   22455554433322       246


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|.+.|.
T Consensus        83 ~d~vi~~ag~   92 (258)
T PRK07890         83 VDALVNNAFR   92 (258)
T ss_pred             ccEEEECCcc
Confidence            8999999874

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.42  E-value=0.0014  Score=49.89  Aligned_cols=75  Identities=24%  Similarity=0.449  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC---EEEcCCCHHHHHH----h---cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQA----A---MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~----~---~~~~  107 (220)
                      +++++||.|+ |++|..+++.+...|++|+.++++.++.....+.   .+..   ...|..+.+.+++    .   .+++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4788999997 9999999998888899999999887655444332   2332   2234444433322    2   1368


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.++|.
T Consensus        84 d~vi~~ag~   92 (253)
T PRK08217         84 NGLINNAGI   92 (253)
T ss_pred             CEEEECCCc
Confidence            999999873

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.001  Score=50.20  Aligned_cols=75  Identities=23%  Similarity=0.388  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCEE-EcCCCHHHHHHh-------cCCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADSF-LVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~~-~~~~~~~~~~~~-------~~~~d~  109 (220)
                      +++++||.|+ |.+|..+++.+...|++|+.++++.++.....+.+   +...+ .|..+.+.+.+.       .+++|+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   85 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDA   85 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCE
Confidence            4789999997 99999999888888999999999776543332222   33222 344444333222       237999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      ++++.|.
T Consensus        86 vi~~ag~   92 (239)
T PRK12828         86 LVNIAGA   92 (239)
T ss_pred             EEECCcc
Confidence            9998874

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.41  E-value=0.0034  Score=48.72  Aligned_cols=74  Identities=19%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccEEE
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~v~  111 (220)
                      ++++||.|+ |.+|..+++.+...|.+|+.++++.++...+.+.++...   -.|..+.+.+.+.       .+++|+++
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi   82 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV   82 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999997 999999998888889999999998776665544443211   2344454433222       24789999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      .++|.
T Consensus        83 ~~ag~   87 (275)
T PRK08263         83 NNAGY   87 (275)
T ss_pred             ECCCC
Confidence            99985

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.41  E-value=0.0012  Score=49.34  Aligned_cols=97  Identities=19%  Similarity=0.159  Sum_probs=63.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE--------------c--CCCHHHHH-Hh
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL--------------V--SRDQDEMQ-AA  103 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~--------------~--~~~~~~~~-~~  103 (220)
                      .++.+||+.|+| .|.-++.+|. .|.+|++++.++...+.+.++.+.....              +  ..+..... ..
T Consensus        33 ~~~~rvLd~GCG-~G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCG-KSLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCC-chhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            577899999998 4888888875 6999999999998777654444432110              0  00000000 11


Q ss_pred             cCCccEEEEcCCC--------cccHHHHHhccccCCEEEEeCCC
Q 027664          104 MGTMDGIIDTVSA--------VHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       104 ~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      .+.||.++|+..-        ...++.+.++|++||+++..+..
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            2358999997542        12467888999999987766553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.0012  Score=50.61  Aligned_cols=75  Identities=23%  Similarity=0.317  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |++|..+++.+...|++|+.+++++++.+.+.+++   +.+.   ..|..+.+.++++       .+++
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999997 89999999888888999999999877666554433   3221   1244554433322       2379


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |+++.++|.
T Consensus        85 d~li~~ag~   93 (254)
T PRK07478         85 DIAFNNAGT   93 (254)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK06128 oxidoreductase; Provisional

Probab=97.40  E-value=0.0048  Score=48.60  Aligned_cols=99  Identities=13%  Similarity=0.190  Sum_probs=62.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc--hHH---HHHHcCCCEE---EcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK--KSE---AVERLGADSF---LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~--~~~---~~~~~g~~~~---~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |++|..++..+...|++|+++..+.+.  .+.   ..+..+....   .|..+.+.++++       .+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  133 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG  133 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence            4689999997 999999998888889999887665321  122   2223343221   344554433322       24


Q ss_pred             CccEEEEcCCCcc--------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          106 TMDGIIDTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~v~d~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ++|++|.++|...                          ..+.+...+.++|+++.++...
T Consensus       134 ~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~  194 (300)
T PRK06128        134 GLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQ  194 (300)
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCcc
Confidence            7999999987420                          1123344556778998876643

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.0011  Score=51.57  Aligned_cols=75  Identities=21%  Similarity=0.314  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..++..+...|++|++++++.++.++..+.+   +.+.   ..|..+.+.+.++       .+.+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV   84 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999997 99999999988889999999998876665554433   3221   2355555444332       2368


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus        85 d~li~nAg~   93 (275)
T PRK05876         85 DVVFSNAGI   93 (275)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK09242 tropinone reductase; Provisional

Probab=97.40  E-value=0.0011  Score=50.85  Aligned_cols=75  Identities=13%  Similarity=0.250  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-----CCCE---EEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-----g~~~---~~~~~~~~~~~~~-------~~  105 (220)
                      .+++++|.|+ |++|..+++.+...|++|++++++.++.+++.+++     +.+.   ..|..+++.++++       .+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999997 99999999988889999999999877665554433     2111   1344454433222       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|+++.+.|.
T Consensus        88 ~id~li~~ag~   98 (257)
T PRK09242         88 GLHILVNNAGG   98 (257)
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.39  E-value=0.00081  Score=53.79  Aligned_cols=77  Identities=22%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCcc---------------------chHHH---HHHcCCCEEE----
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS---------------------KKSEA---VERLGADSFL----   92 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~---------------------~~~~~---~~~~g~~~~~----   92 (220)
                      .+.+|+|+|+|++|..++..+...|. ++++++...-                     |.+.+   ++++..+..+    
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~  102 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV  102 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence            45789999999999999999999999 7877776531                     11111   1222221111    


Q ss_pred             cCCCHHHHHHhcCCccEEEEcCCCcc
Q 027664           93 VSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        93 ~~~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      ..-..+.+.++..++|+|+||+.+..
T Consensus       103 ~~~~~~~~~~~~~~~DlVid~~D~~~  128 (338)
T PRK12475        103 TDVTVEELEELVKEVDLIIDATDNFD  128 (338)
T ss_pred             ccCCHHHHHHHhcCCCEEEEcCCCHH
Confidence            11123445566678999999998764

>PRK09186 flagellin modification protein A; Provisional

Probab=97.39  E-value=0.0012  Score=50.54  Aligned_cols=74  Identities=23%  Similarity=0.305  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CC---CE-EEcCCCHHHHHHhc-------C
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GA---DS-FLVSRDQDEMQAAM-------G  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~---~~-~~~~~~~~~~~~~~-------~  105 (220)
                      .++++||.|+ |.+|..++..+...|++|+.+.++.++.+++.+.+    +.   .. ..|..+.+.+.++.       +
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4789999997 89999999988889999999998877665554443    21   12 23555555443322       3


Q ss_pred             CccEEEEcCC
Q 027664          106 TMDGIIDTVS  115 (220)
Q Consensus       106 ~~d~v~d~~g  115 (220)
                      ++|+++.+++
T Consensus        83 ~id~vi~~A~   92 (256)
T PRK09186         83 KIDGAVNCAY   92 (256)
T ss_pred             CccEEEECCc
Confidence            5899999985

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.38  E-value=0.001  Score=52.89  Aligned_cols=74  Identities=20%  Similarity=0.250  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-----CE-EEcCCCHHHHHHhc-------CCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-----DS-FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-----~~-~~~~~~~~~~~~~~-------~~~  107 (220)
                      .+++++|.|+ |++|..+++.+...|++|++++++.++.+.+.+.++.     .. ..|..+.+.++++.       +++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   84 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL   84 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence            4678999997 9999999988888899999999987766665555421     11 23555544433321       259


Q ss_pred             cEEEEcCC
Q 027664          108 DGIIDTVS  115 (220)
Q Consensus       108 d~v~d~~g  115 (220)
                      |++|+++|
T Consensus        85 D~li~nAg   92 (322)
T PRK07453         85 DALVCNAA   92 (322)
T ss_pred             cEEEECCc
Confidence            99999987

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.38  E-value=0.0025  Score=49.81  Aligned_cols=96  Identities=18%  Similarity=0.141  Sum_probs=71.6

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ..+||+.......+...+---.|++|.|+|. +.+|.-++.++...|++|++..+....                     
T Consensus       137 ~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~---------------------  195 (301)
T PRK14194        137 VLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTD---------------------  195 (301)
T ss_pred             CCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCC---------------------
Confidence            3567777777777766653357999999997 599999999999999999988655321                     


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +++.....|+|+-++|.+..+...+  +++|..++.+|..
T Consensus       196 l~e~~~~ADIVIsavg~~~~v~~~~--ik~GaiVIDvgin  233 (301)
T PRK14194        196 AKALCRQADIVVAAVGRPRLIDADW--LKPGAVVIDVGIN  233 (301)
T ss_pred             HHHHHhcCCEEEEecCChhcccHhh--ccCCcEEEEeccc
Confidence            3333446799999999886555443  8888888888754

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.0014  Score=49.22  Aligned_cols=71  Identities=23%  Similarity=0.272  Sum_probs=52.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhc----CCccEEEEcCC
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAM----GTMDGIIDTVS  115 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~----~~~d~v~d~~g  115 (220)
                      +++|.|+ |++|..+++.+...|.+|+.+.++.++.+.+.+.++...+ .|..+.+.++++.    +.+|+++++.|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCC
Confidence            4889987 9999999998888899999999988776666555554332 4555655544432    36899999875

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.37  E-value=0.0025  Score=49.44  Aligned_cols=96  Identities=16%  Similarity=0.189  Sum_probs=69.8

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ..+||+..+....+...+---.|++|+|+|.| .+|.-++.++...|+.|++......                     .
T Consensus       135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~---------------------~  193 (285)
T PRK14191        135 GFVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTK---------------------D  193 (285)
T ss_pred             CCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcH---------------------H
Confidence            34677766666666665532479999999975 9999999999999999887643221                     1


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +.+....+|+++-++|.+..+.  -+.+++|..++.+|..
T Consensus       194 l~~~~~~ADIvV~AvG~p~~i~--~~~vk~GavVIDvGi~  231 (285)
T PRK14191        194 LSFYTQNADIVCVGVGKPDLIK--ASMVKKGAVVVDIGIN  231 (285)
T ss_pred             HHHHHHhCCEEEEecCCCCcCC--HHHcCCCcEEEEeecc
Confidence            2334457899999999886443  3467888899998864

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.0012  Score=50.44  Aligned_cols=74  Identities=20%  Similarity=0.313  Sum_probs=51.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC-EE--EcCCCHHHHHHh-------cCCcc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD-SF--LVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~-~~--~~~~~~~~~~~~-------~~~~d  108 (220)
                      |+++||.|+ |++|..+++.+...|.+|++++++.++.+.+.+.+   +.. ..  .|..+++.++++       .+++|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            468999997 89999999988889999999998876655543332   221 12  245555444332       24789


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++++++|.
T Consensus        81 ~lI~~ag~   88 (252)
T PRK07677         81 ALINNAAG   88 (252)
T ss_pred             EEEECCCC
Confidence            99999874

>PLN02928 oxidoreductase family protein

Probab=97.37  E-value=0.0032  Score=50.63  Aligned_cols=95  Identities=19%  Similarity=0.235  Sum_probs=63.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-----CCEEEc-CCCHHHHHHhcCCccEEEEcCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-----ADSFLV-SRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-----~~~~~~-~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      .|+++.|+|.|.+|..+++.++.+|.+|++.+++..+...  ..++     .....+ ......+.++....|+|+-+++
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lP  235 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPE--DGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCT  235 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhh--hhhccccccccccccccCcccCHHHHHhhCCEEEECCC
Confidence            5789999999999999999999999999999886432111  1111     001110 0112234555567899999886


Q ss_pred             Ccc----c-HHHHHhccccCCEEEEeCC
Q 027664          116 AVH----P-LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       116 ~~~----~-~~~~~~~l~~~G~~v~~g~  138 (220)
                      ...    . -...++.|+++..+|.++-
T Consensus       236 lt~~T~~li~~~~l~~Mk~ga~lINvaR  263 (347)
T PLN02928        236 LTKETAGIVNDEFLSSMKKGALLVNIAR  263 (347)
T ss_pred             CChHhhcccCHHHHhcCCCCeEEEECCC
Confidence            422    1 2467789999999988864

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.37  E-value=0.0034  Score=44.54  Aligned_cols=114  Identities=14%  Similarity=0.033  Sum_probs=64.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      -.|.+|+|+|+|.+|..-++.+...|++|+++.  ++..+++ +.++.-. +.....+  .....++|+|+-++++++ .
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l-~~l~~i~-~~~~~~~--~~dl~~a~lViaaT~d~e-~   83 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEM-KELPYIT-WKQKTFS--NDDIKDAHLIYAATNQHA-V   83 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHH-HhccCcE-EEecccC--hhcCCCceEEEECCCCHH-H
Confidence            367899999999999999998888999998884  3333444 3344211 2211111  112347899999998875 5


Q ss_pred             HHHHhccccCCEEEEeCCCCCCCCCCchhh-hcCCeEEEEEe
Q 027664          121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPL-LTGRKIVGGSL  161 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~~~  161 (220)
                      +..+...++.+.++.........++..+.. -...+.+.-+.
T Consensus        84 N~~i~~~a~~~~~vn~~d~~~~~~f~~pa~v~~~~l~iaisT  125 (157)
T PRK06719         84 NMMVKQAAHDFQWVNVVSDGTESSFHTPGVIRNDEYVVTIST  125 (157)
T ss_pred             HHHHHHHHHHCCcEEECCCCCcCcEEeeeEEEECCeEEEEEC
Confidence            554444443344444433222233333322 33345554433

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.36  E-value=0.0021  Score=51.22  Aligned_cols=94  Identities=19%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHH-HCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~-~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      -.+++|+|+|+ |.+|..+++.+. ..|+ +++.+.++.++...+.++++...+      ..+.+.....|+|+.+++.+
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i------~~l~~~l~~aDiVv~~ts~~  226 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKI------LSLEEALPEADIVVWVASMP  226 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccH------HhHHHHHccCCEEEECCcCC
Confidence            36789999998 899999987775 4576 888888887777666555542111      12344455899999999875


Q ss_pred             ccHHHHHhccccCCEEEEeCCCC
Q 027664          118 HPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       118 ~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ..+..-...++++-.++.++.+.
T Consensus       227 ~~~~I~~~~l~~~~~viDiAvPR  249 (340)
T PRK14982        227 KGVEIDPETLKKPCLMIDGGYPK  249 (340)
T ss_pred             cCCcCCHHHhCCCeEEEEecCCC
Confidence            44322224557777888887764

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.36  E-value=0.0022  Score=41.26  Aligned_cols=86  Identities=21%  Similarity=0.358  Sum_probs=58.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCC---CeEEEE-eCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMG---VKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g---~~vi~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      ++.|+|+|.+|.+.+.-+...|   .+|+.+ .+++++.+++.++++..... .+..+.+    +..|+||-|+.... +
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~----~~advvilav~p~~-~   74 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATA-DDNEEAA----QEADVVILAVKPQQ-L   74 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEES-EEHHHHH----HHTSEEEE-S-GGG-H
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcccccc-CChHHhh----ccCCEEEEEECHHH-H
Confidence            4678899999999999888888   688855 89998888888888864332 1222222    25799999998764 5


Q ss_pred             HHHHhc---cccCCEEEEe
Q 027664          121 MPLIGL---LKSQGKLVLL  136 (220)
Q Consensus       121 ~~~~~~---l~~~G~~v~~  136 (220)
                      ...+..   ..++..++.+
T Consensus        75 ~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   75 PEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             HHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHhhccCCCEEEEe
Confidence            444443   4455555554

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.36  E-value=0.0032  Score=46.76  Aligned_cols=96  Identities=28%  Similarity=0.301  Sum_probs=62.9

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHH---HcCCC---EEEcCCCHHHHHHhcCCccEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      .++++++||-+|+|. |..+..+++..+  .+|+.++.+++..+.+.+   ..+..   .++..+-.+.+. ..+.||.|
T Consensus        69 ~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I  146 (205)
T PRK13944         69 EPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAI  146 (205)
T ss_pred             CCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEE
Confidence            368899999999874 777777777764  489999999875554433   33432   222211111111 12479999


Q ss_pred             EEcCCCcccHHHHHhccccCCEEEEe
Q 027664          111 IDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       111 ~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      +-+.......+.+.+.|++||+++..
T Consensus       147 i~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        147 IVTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             EEccCcchhhHHHHHhcCcCcEEEEE
Confidence            86655444567888999999999864

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0013  Score=50.53  Aligned_cols=75  Identities=20%  Similarity=0.323  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCC---EEEcCCCHHHHHHhc---CCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GAD---SFLVSRDQDEMQAAM---GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~---~~~d~v  110 (220)
                      .+++++|.|+ |++|..+++.+...|++|++++++.++.+.+.+.+    +..   ...|..+.+.+.++.   +.+|++
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~l   85 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDIL   85 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEE
Confidence            4789999997 89999999888888999999999877655543332    221   113445555444432   479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      +.+.|.
T Consensus        86 v~~ag~   91 (259)
T PRK06125         86 VNNAGA   91 (259)
T ss_pred             EECCCC
Confidence            999875

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.35  E-value=0.0042  Score=49.70  Aligned_cols=88  Identities=23%  Similarity=0.367  Sum_probs=63.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..+++.++.+|.+|++.+++....  .....+..    ..+   +.+.....|+|+-++....   
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~~~~----~~~---l~ell~~aDiV~l~lP~t~~T~  219 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE--AEKELGAE----YRP---LEELLRESDFVSLHVPLTKETY  219 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh--hHHHcCCE----ecC---HHHHHhhCCEEEEeCCCChHHh
Confidence            57899999999999999999999999999998875432  22334432    112   3344456899998887532   


Q ss_pred             -cH-HHHHhccccCCEEEEeCC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g~  138 (220)
                       .+ ...+..|+++..++.++-
T Consensus       220 ~~i~~~~~~~mk~ga~lIN~aR  241 (333)
T PRK13243        220 HMINEERLKLMKPTAILVNTAR  241 (333)
T ss_pred             hccCHHHHhcCCCCeEEEECcC
Confidence             12 356788888888888754

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.35  E-value=0.0015  Score=51.82  Aligned_cols=71  Identities=23%  Similarity=0.280  Sum_probs=53.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHhcCCccEEEEcCCC
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      +|+|.|+ |-+|..+++.+...|.+|++++++.++...+ ...+++.+. |..+.+.+.+...++|+||++++.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~   74 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL-KEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS   74 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH-hhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence            6899997 9999999988888899999999886543332 334554432 445666676766789999998764

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0018  Score=48.59  Aligned_cols=72  Identities=19%  Similarity=0.219  Sum_probs=50.4

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-CC-EEEcCCCHHHHHHh----cC-CccEEEEcCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-AD-SFLVSRDQDEMQAA----MG-TMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~----~~-~~d~v~d~~g  115 (220)
                      ++++|.|+ |++|..+++.+...|.+|+++++++++.+.+ +.++ .. ...|..+.+.++++    .+ ++|++|.++|
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTAL-QALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHH-HhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            46899997 9999999988888899999999988766554 3332 22 22455555444333    22 6999999886


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        81 ~   81 (225)
T PRK08177         81 I   81 (225)
T ss_pred             c
Confidence            4

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.33  E-value=0.0013  Score=50.09  Aligned_cols=75  Identities=17%  Similarity=0.287  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc--CCC--E-EEcCCCHHHHHHh-------cCCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--GAD--S-FLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~--g~~--~-~~~~~~~~~~~~~-------~~~~d  108 (220)
                      ++++++|.|+ |.+|..+++.+...|++|+.+.++.++.......+  +..  . ..|..+.+.+++.       .+++|
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   83 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLD   83 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4678999997 99999999877778999999998876555544433  221  1 1344554444332       24799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      +++.++|.
T Consensus        84 ~vi~~ag~   91 (252)
T PRK06138         84 VLVNNAGF   91 (252)
T ss_pred             EEEECCCC
Confidence            99999985

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.32  E-value=0.0035  Score=50.12  Aligned_cols=95  Identities=19%  Similarity=0.299  Sum_probs=62.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCccchHHHHHHc----CCCEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVERL----GADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~-~g~-~vi~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      +...+++|+|+|..|.+.+..+.. .+. +|.+..++.++.+.+++.+    |.. +....+   +++.....|+|+.|+
T Consensus       130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~-v~~~~d---~~~al~~aDiVi~aT  205 (330)
T PRK08291        130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIP-VTVARD---VHEAVAGADIIVTTT  205 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCce-EEEeCC---HHHHHccCCEEEEee
Confidence            445789999999999887776654 676 8999999988877776654    332 111222   333345789999998


Q ss_pred             CCcccHHHHHhccccCCEEEEeCCCC
Q 027664          115 SAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       115 g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +....+-.. ..++++-++..+|...
T Consensus       206 ~s~~p~i~~-~~l~~g~~v~~vg~d~  230 (330)
T PRK08291        206 PSEEPILKA-EWLHPGLHVTAMGSDA  230 (330)
T ss_pred             CCCCcEecH-HHcCCCceEEeeCCCC
Confidence            875432211 3467777777776543

>PRK04148 hypothetical protein; Provisional

Probab=97.32  E-value=0.007  Score=41.45  Aligned_cols=88  Identities=17%  Similarity=0.139  Sum_probs=59.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      .++.+++++|.| .|..+++.+...|.+|++++.++...+.+ +..+.+.+.+.--. .-.++-+++|+++.+-..++..
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a-~~~~~~~v~dDlf~-p~~~~y~~a~liysirpp~el~   91 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKA-KKLGLNAFVDDLFN-PNLEIYKNAKLIYSIRPPRDLQ   91 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHH-HHhCCeEEECcCCC-CCHHHHhcCCEEEEeCCCHHHH
Confidence            456889999999 78766666668899999999999877666 55665444332111 1112334889999888887655


Q ss_pred             HHHHhccccCC
Q 027664          121 MPLIGLLKSQG  131 (220)
Q Consensus       121 ~~~~~~l~~~G  131 (220)
                      ..+++.-++-|
T Consensus        92 ~~~~~la~~~~  102 (134)
T PRK04148         92 PFILELAKKIN  102 (134)
T ss_pred             HHHHHHHHHcC
Confidence            55555554433

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0022  Score=49.17  Aligned_cols=74  Identities=20%  Similarity=0.263  Sum_probs=51.9

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC----C-EEEcCCCHHHHHHh-------cCCccE
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----D-SFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~----~-~~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      +.++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+..    . ...|..+.+.+.+.       .+.+|+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~   81 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV   81 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            468999997 9999999988888899999999987766655544421    1 12355554444332       235899


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      ++.++|.
T Consensus        82 lv~~ag~   88 (257)
T PRK07024         82 VIANAGI   88 (257)
T ss_pred             EEECCCc
Confidence            9999874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.31  E-value=0.0011  Score=49.48  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=29.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      ...+|+|+|+|++|..+++.+...|. ++++++..
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45779999999999999999988999 78888876

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.30  E-value=0.0023  Score=49.64  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCccc---hHHHHHHcCCCE--EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSK---KSEAVERLGADS--FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g--~~G~~~~~la~~~g~~vi~~~~~~~~---~~~~~~~~g~~~--~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ +  ++|.++++.+...|++|+++.+++..   .+++.+.+|...  ..|..+.+.++++       .+.
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK   85 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            5789999997 4  89999999888899999998776422   223333345322  2355555444332       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        86 iD~lVnnAG~   95 (271)
T PRK06505         86 LDFVVHAIGF   95 (271)
T ss_pred             CCEEEECCcc
Confidence            9999999874

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0014  Score=50.40  Aligned_cols=73  Identities=21%  Similarity=0.262  Sum_probs=52.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC---CC-EEEcCCCHHHHHHh--------cCCccEE
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---AD-SFLVSRDQDEMQAA--------MGTMDGI  110 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g---~~-~~~~~~~~~~~~~~--------~~~~d~v  110 (220)
                      +++||.|+ |.+|..+++.+...|++|++++++.++.+++.+..+   .. ...|..+.+.+.+.        .+++|++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v   81 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL   81 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence            47899997 999999998888889999999998877666655443   11 12455554433322        2468999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      +.++|.
T Consensus        82 i~~ag~   87 (260)
T PRK08267         82 FNNAGI   87 (260)
T ss_pred             EECCCC
Confidence            999985

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.30  E-value=0.0019  Score=49.14  Aligned_cols=75  Identities=19%  Similarity=0.305  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |.+|..+++.+...|.+|+++.++++....+.+.+   +..   ...|..+.+.+++.       .+++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   84 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI   84 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            4678999997 99999999888888999999998876544443322   211   22455554433322       2369


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.++|.
T Consensus        85 d~vi~~ag~   93 (250)
T PRK07774         85 DYLVNNAAI   93 (250)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.30  E-value=0.0071  Score=46.51  Aligned_cols=75  Identities=16%  Similarity=0.270  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCc---cchHHHHHHc-CCC---EEEcCCCHHHHHHh-------c
Q 027664           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSP---SKKSEAVERL-GAD---SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~---~~~~~~~~~~-g~~---~~~~~~~~~~~~~~-------~  104 (220)
                      .+++++|.|+   +++|.++++.+...|++|+.+.++.   ++.+++.+.+ +..   ...|..+++.++++       .
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   85 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV   85 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence            5789999996   5999999988888899999886542   3344454444 211   22355555433322       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++++++|.
T Consensus        86 g~ld~lv~nag~   97 (257)
T PRK08594         86 GVIHGVAHCIAF   97 (257)
T ss_pred             CCccEEEECccc
Confidence            469999998873

>PRK08643 acetoin reductase; Validated

Probab=97.29  E-value=0.0016  Score=49.86  Aligned_cols=74  Identities=22%  Similarity=0.338  Sum_probs=51.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCCcc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~~d  108 (220)
                      ++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +..   ...|..+++.+++.       .+++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            568999997 99999999988888999999998876655543332   221   12345554433322       24799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|.++|.
T Consensus        82 ~vi~~ag~   89 (256)
T PRK08643         82 VVVNNAGV   89 (256)
T ss_pred             EEEECCCC
Confidence            99999875

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.29  E-value=0.0018  Score=49.68  Aligned_cols=76  Identities=22%  Similarity=0.308  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      .+++++||.|+ |.+|..+++.+...|++|++++++.++.+...+.+   +..   ...|..+.+.+++.       .++
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35789999997 99999999888888999999999876655443322   221   22355555444322       237


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|.++.++|.
T Consensus        90 id~vi~~ag~   99 (259)
T PRK08213         90 VDILVNNAGA   99 (259)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.29  E-value=0.0028  Score=48.56  Aligned_cols=75  Identities=17%  Similarity=0.286  Sum_probs=49.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHh-------cCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      .+++++|.|+ |++|..+++.+...|++|+++.++.+......+..+... ..|..+++.++++       .+++|++|.
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~   85 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVN   85 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999997 999999999888889999887665433222222223322 2355565444332       247999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        86 ~ag~   89 (255)
T PRK06463         86 NAGI   89 (255)
T ss_pred             CCCc
Confidence            9875

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.29  E-value=0.0022  Score=49.18  Aligned_cols=75  Identities=20%  Similarity=0.319  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |.+|..+++.+...|.+|+.++++.++.+.+.+.++..   ...|-.+.+.+.++       .+.+|++
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   84 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDIL   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4678999997 99999999988888999999999887766665555421   12244444433322       2368999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      +.+.|.
T Consensus        85 i~~ag~   90 (257)
T PRK07067         85 FNNAAL   90 (257)
T ss_pred             EECCCc
Confidence            998874

>PRK08589 short chain dehydrogenase; Validated

Probab=97.29  E-value=0.0019  Score=50.13  Aligned_cols=74  Identities=16%  Similarity=0.305  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC---CEEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA---DSFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~---~~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ +++|..+++.+...|++|++++++ ++.+...+.+   +.   ....|..+.+.+.++       .+++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            5789999997 899999998888889999999988 5544443333   32   122455554433322       2468


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        84 d~li~~Ag~   92 (272)
T PRK08589         84 DVLFNNAGV   92 (272)
T ss_pred             CEEEECCCC
Confidence            999999874

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.29  E-value=0.0026  Score=47.62  Aligned_cols=98  Identities=30%  Similarity=0.333  Sum_probs=62.3

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHH---HcCCCEE-EcCCCHHHHHHhcCCccEEE
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVE---RLGADSF-LVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~---~~g~~~~-~~~~~~~~~~~~~~~~d~v~  111 (220)
                      ..++++++||-+|+|. |..++.+++..+.  +|+.++.+++..+.+.+   .+|.+.+ +...+..........||+|+
T Consensus        73 l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii  151 (215)
T TIGR00080        73 LELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIY  151 (215)
T ss_pred             hCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEE
Confidence            3478999999999874 7777788887654  69999988775544433   3343211 11111111001113799987


Q ss_pred             EcCCCcccHHHHHhccccCCEEEEe
Q 027664          112 DTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       112 d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      -..........+.+.|++||+++..
T Consensus       152 ~~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       152 VTAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             EcCCcccccHHHHHhcCcCcEEEEE
Confidence            5544444567888999999998865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0021  Score=49.51  Aligned_cols=75  Identities=19%  Similarity=0.289  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc--C--CCE-EEcCCCHHHHHHh------cCCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--G--ADS-FLVSRDQDEMQAA------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~--g--~~~-~~~~~~~~~~~~~------~~~~d~  109 (220)
                      ++.++||.|+ |++|..+++.+...|++|+++++++++.+.+.+.+  +  ... ..|..+.+.+.++      .+.+|+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~   83 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV   83 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence            4678999997 99999999888888999999999877666554443  1  111 1344444433322      247899


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      ++.++|.
T Consensus        84 lv~~ag~   90 (263)
T PRK09072         84 LINNAGV   90 (263)
T ss_pred             EEECCCC
Confidence            9999875

>PRK08862 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0023  Score=48.28  Aligned_cols=74  Identities=11%  Similarity=0.126  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cC-C
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MG-T  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~-~  106 (220)
                      .+++++|.|+ +++|..++.-+...|++|+.+.++.++.+++.+.+   +.+   ...|..+.+.++++       .+ .
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4688999997 89999999888888999999999887766554332   432   12344454433322       24 6


Q ss_pred             ccEEEEcCC
Q 027664          107 MDGIIDTVS  115 (220)
Q Consensus       107 ~d~v~d~~g  115 (220)
                      +|++|.+.|
T Consensus        84 iD~li~nag   92 (227)
T PRK08862         84 PDVLVNNWT   92 (227)
T ss_pred             CCEEEECCc
Confidence            999999986

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.28  E-value=0.0018  Score=48.90  Aligned_cols=71  Identities=23%  Similarity=0.401  Sum_probs=54.2

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           46 VGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      |+|.|+ |.+|..+++.+...+.+|.+..++... .....+..|++.+ .|+.+.+.+.+...|+|.||.+++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            689998 999999999888888899999998742 2223356788654 3556677787878899999999984

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.27  E-value=0.0091  Score=43.95  Aligned_cols=100  Identities=16%  Similarity=0.130  Sum_probs=60.2

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHH---HcCCCE--EEcCCCHHHHHHhcCCccEE
Q 027664           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVE---RLGADS--FLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~---~~g~~~--~~~~~~~~~~~~~~~~~d~v  110 (220)
                      ...++++++||-.|+|. |..++.+++.. +.+|++++.+++..+.+.+   .++.+.  ++..+..+.+..+...+|.+
T Consensus        35 ~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v  113 (196)
T PRK07402         35 QLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRV  113 (196)
T ss_pred             hcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEE
Confidence            33467889988888763 66666667654 4699999999876555433   344432  22222222232333344554


Q ss_pred             EEcCCC--cccHHHHHhccccCCEEEEeC
Q 027664          111 IDTVSA--VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 ~d~~g~--~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      +-..+.  ...++.+.+.|++||+++...
T Consensus       114 ~~~~~~~~~~~l~~~~~~LkpgG~li~~~  142 (196)
T PRK07402        114 CIEGGRPIKEILQAVWQYLKPGGRLVATA  142 (196)
T ss_pred             EEECCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence            332232  235678888999999998874

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.27  E-value=0.0033  Score=49.77  Aligned_cols=91  Identities=18%  Similarity=0.243  Sum_probs=60.5

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc-
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP-  119 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  119 (220)
                      ..+|.|+|+|.+|...+..++..|.  +|++.++++++.+.+ +..|....... +   ..+.....|+||.|++.... 
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a-~~~g~~~~~~~-~---~~~~~~~aDvViiavp~~~~~   80 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA-RELGLGDRVTT-S---AAEAVKGADLVILCVPVGASG   80 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH-HhCCCCceecC-C---HHHHhcCCCEEEECCCHHHHH
Confidence            3579999999999999998888884  888898887766555 45664221111 1   12233578999999986531 


Q ss_pred             --HHHHHhccccCCEEEEeCC
Q 027664          120 --LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 --~~~~~~~l~~~G~~v~~g~  138 (220)
                        +......++++..++.+|.
T Consensus        81 ~v~~~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         81 AVAAEIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             HHHHHHHhhCCCCCEEEeCcc
Confidence              2333345666776766654

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.26  E-value=0.0026  Score=45.68  Aligned_cols=92  Identities=23%  Similarity=0.364  Sum_probs=62.7

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--CEEEcCCCHHHHHHhcCCccEEEEcCCCc--c-
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSFLVSRDQDEMQAAMGTMDGIIDTVSAV--H-  118 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~d~v~d~~g~~--~-  118 (220)
                      +|-|+|+ |-+|...++=|+.+|-.|+++++++++.... +..-+  ..++   +.+.+.+...|+|+||++.|..  . 
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-~~~~i~q~Dif---d~~~~a~~l~g~DaVIsA~~~~~~~~   77 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-QGVTILQKDIF---DLTSLASDLAGHDAVISAFGAGASDN   77 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-ccceeeccccc---ChhhhHhhhcCCceEEEeccCCCCCh
Confidence            5778887 9999999999999999999999999876432 11111  1122   2233344556999999998864  1 


Q ss_pred             ------cHHHHHhccccC--CEEEEeCCCC
Q 027664          119 ------PLMPLIGLLKSQ--GKLVLLGAPE  140 (220)
Q Consensus       119 ------~~~~~~~~l~~~--G~~v~~g~~~  140 (220)
                            ..+.++..++..  -|+..+|..+
T Consensus        78 ~~~~~k~~~~li~~l~~agv~RllVVGGAG  107 (211)
T COG2910          78 DELHSKSIEALIEALKGAGVPRLLVVGGAG  107 (211)
T ss_pred             hHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence                  123466667663  4788887654

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.26  E-value=0.0027  Score=48.41  Aligned_cols=72  Identities=19%  Similarity=0.276  Sum_probs=51.6

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccEEEEc
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGIIDT  113 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~v~d~  113 (220)
                      +++|.|+ |++|..++..+...|++|+++++++++.+.+...++.+.   ..|..+.+.+++.       .+++|.++.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~   81 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6899997 999999999888889999999998876666555444321   1345554433322       2379999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        82 ag~   84 (248)
T PRK10538         82 AGL   84 (248)
T ss_pred             CCc
Confidence            874

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.25  E-value=0.0018  Score=48.99  Aligned_cols=75  Identities=21%  Similarity=0.356  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+.+++|.|+ |.+|..++..+...|.+|++++++.++.++..+.+   +...   ..|..+.+.+.+.       .+++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            3578999997 89999999888888999999999876554443332   2211   2244444433322       1379


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.++|.
T Consensus        86 d~vi~~ag~   94 (239)
T PRK07666         86 DILINNAGI   94 (239)
T ss_pred             cEEEEcCcc
Confidence            999999875

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.002  Score=49.54  Aligned_cols=74  Identities=14%  Similarity=0.265  Sum_probs=50.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE---EEcCCCHHHHHHh-------cCCcc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~-------~~~~d  108 (220)
                      +.++||.|+ |.+|..+++.+...|.+|+.++++..+.+.+.+.   .+...   ..|..+.+.+.+.       .+++|
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            357999997 9999999998888899999999887654444332   23221   2344454433322       13789


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|.++|.
T Consensus        81 ~vi~~ag~   88 (263)
T PRK06181         81 ILVNNAGI   88 (263)
T ss_pred             EEEECCCc
Confidence            99999875

>PRK04457 spermidine synthase; Provisional

Probab=97.24  E-value=0.0072  Score=46.68  Aligned_cols=95  Identities=18%  Similarity=0.225  Sum_probs=62.4

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCC----C--EEEcCCCHHHHHHhcCCccEEE-E
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGA----D--SFLVSRDQDEMQAAMGTMDGII-D  112 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~----~--~~~~~~~~~~~~~~~~~~d~v~-d  112 (220)
                      .+.++||++|+|+ |..+..+++.. +.++++++.+++-.+.+.+.++.    +  .++..+-.+.+....+.||+|+ |
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            4567899999874 77777777776 45999999998766665554442    1  1222222334444445799986 4


Q ss_pred             cCCC---------cccHHHHHhccccCCEEEEe
Q 027664          113 TVSA---------VHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       113 ~~g~---------~~~~~~~~~~l~~~G~~v~~  136 (220)
                      +...         .+.++.+.+.|+++|.++.-
T Consensus       144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            4221         23467788999999999873

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0029  Score=48.52  Aligned_cols=77  Identities=18%  Similarity=0.196  Sum_probs=50.7

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCccc-hHHHHHHc---CC-C-E--EEcCCCHHH----HHHhc-
Q 027664           40 DKPGMHVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSK-KSEAVERL---GA-D-S--FLVSRDQDE----MQAAM-  104 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~la~~~-g~~vi~~~~~~~~-~~~~~~~~---g~-~-~--~~~~~~~~~----~~~~~-  104 (220)
                      +..+++++|.|+ |++|..+++-+... |++|+++++++++ .+.+.+++   +. + .  ..|..+.+.    +++.. 
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~   84 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA   84 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence            456788999997 99999999876666 4899999998775 44443333   22 1 1  234444433    23222 


Q ss_pred             -CCccEEEEcCCC
Q 027664          105 -GTMDGIIDTVSA  116 (220)
Q Consensus       105 -~~~d~v~d~~g~  116 (220)
                       +++|+++.+.|.
T Consensus        85 ~g~id~li~~ag~   97 (253)
T PRK07904         85 GGDVDVAIVAFGL   97 (253)
T ss_pred             cCCCCEEEEeeec
Confidence             479999988765

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.24  E-value=0.0023  Score=52.17  Aligned_cols=77  Identities=23%  Similarity=0.365  Sum_probs=50.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------ccchHHHHHHc----CCCEEEcCC--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS-------------------PSKKSEAVERL----GADSFLVSR--   95 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~-------------------~~~~~~~~~~~----g~~~~~~~~--   95 (220)
                      .+.+|+|+|+|++|..++..+...|+ ++++++..                   ..|.+.+++.+    +...+....  
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  213 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER  213 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            56789999999999999999999999 78888876                   22333332222    211111111  


Q ss_pred             -CHHHHHHhcCCccEEEEcCCCcc
Q 027664           96 -DQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        96 -~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                       +.+.+.++..++|+|+||+.+..
T Consensus       214 ~~~~~~~~~~~~~D~Vv~~~d~~~  237 (376)
T PRK08762        214 VTSDNVEALLQDVDVVVDGADNFP  237 (376)
T ss_pred             CChHHHHHHHhCCCEEEECCCCHH
Confidence             12334455568999999999864

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.24  E-value=0.0015  Score=51.61  Aligned_cols=76  Identities=26%  Similarity=0.300  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-----CCC---EEEcCCCHHHHHHh-------c
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GAD---SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-----g~~---~~~~~~~~~~~~~~-------~  104 (220)
                      ..+++++|.|+ |++|..+++.+...|++|++++++.++.+.+.+.+     +..   ...|..+.+.++++       .
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            35789999997 99999999888888999999998876554433322     111   12355554443332       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++|.++|.
T Consensus        94 ~~iD~li~nAg~  105 (306)
T PRK06197         94 PRIDLLINNAGV  105 (306)
T ss_pred             CCCCEEEECCcc
Confidence            369999999874

>PRK08017 oxidoreductase; Provisional

Probab=97.23  E-value=0.0033  Score=48.09  Aligned_cols=72  Identities=19%  Similarity=0.288  Sum_probs=51.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHH----h---c-CCccEEEEc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQA----A---M-GTMDGIIDT  113 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~----~---~-~~~d~v~d~  113 (220)
                      ++++|.|+ |.+|..+++.+...|.+|+++.++.++.+.+ +..++..+ .|..+.+.+.+    .   . +.+|.++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM-NSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH-HhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            57999998 9999999999888899999999988766555 44565433 35555433322    1   2 368888988


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      .|.
T Consensus        82 ag~   84 (256)
T PRK08017         82 AGF   84 (256)
T ss_pred             CCC
Confidence            774

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.23  E-value=0.0019  Score=49.59  Aligned_cols=75  Identities=16%  Similarity=0.312  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCEE---EcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSF---LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|.+|+++.+++++.+++.+.   .+.+..   .|..+.+.+.+.       .+++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999998 9999999998888999999999988655544433   333221   244454433322       2368


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |+++.++|.
T Consensus        86 d~vi~~ag~   94 (262)
T PRK13394         86 DILVSNAGI   94 (262)
T ss_pred             CEEEECCcc
Confidence            999999875

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=97.23  E-value=0.0028  Score=51.05  Aligned_cols=75  Identities=21%  Similarity=0.245  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC----CC-EEEcCCCHHHHHHhcC--CccEEEEc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----AD-SFLVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g----~~-~~~~~~~~~~~~~~~~--~~d~v~d~  113 (220)
                      .|++|||.|+ |.+|..+++.+...|.+|++++++........+.++    .. ...|..+.+.+.++..  ++|+||.+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~   82 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL   82 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence            4688999997 999999999888889999999877654332222222    22 2235555555655544  58999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      ++.
T Consensus        83 A~~   85 (349)
T TIGR02622        83 AAQ   85 (349)
T ss_pred             Ccc
Confidence            974

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.23  E-value=0.0016  Score=48.77  Aligned_cols=95  Identities=17%  Similarity=0.119  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE---------cCCCH----HHHHH----
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL---------VSRDQ----DEMQA----  102 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~---------~~~~~----~~~~~----  102 (220)
                      ..++.+||+.|+| .|.-++.+|. .|.+|++++.++...+.+.++.+.....         ...+.    ..+.+    
T Consensus        35 ~~~~~rvL~~gCG-~G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         35 LPAGSRVLVPLCG-KSLDMLWLAE-QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCCeEEEeCCC-ChHhHHHHHh-CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            3567899999997 4787777775 6999999999998777664444432110         00000    00111    


Q ss_pred             hcCCccEEEEcCCC--------cccHHHHHhccccCCEEEEe
Q 027664          103 AMGTMDGIIDTVSA--------VHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       103 ~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~  136 (220)
                      ..+.||.|+|...-        ...+..+.++|++||++.++
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            11368999986631        12467788999999875543

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0029  Score=49.05  Aligned_cols=75  Identities=21%  Similarity=0.349  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-----CC-EE--EcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-----AD-SF--LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-----~~-~~--~~~~~~~~~~~~-------~~  105 (220)
                      +++++||.|+ |.+|..+++.+...|.+|+.+.++.++.+...+.+.     .. .+  .|..+++.+.+.       .+
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG   85 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4689999997 999999999888899999999988765544433321     11 11  244444433322       13


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++|.++|.
T Consensus        86 ~~d~li~~ag~   96 (276)
T PRK05875         86 RLHGVVHCAGG   96 (276)
T ss_pred             CCCEEEECCCc
Confidence            78999999873

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.23  E-value=0.007  Score=42.92  Aligned_cols=98  Identities=18%  Similarity=0.284  Sum_probs=62.4

Q ss_pred             cccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHH
Q 027664           20 TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD   98 (220)
Q Consensus        20 aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~   98 (220)
                      -..+||+....+..++..+---.|++++|+|. ..+|.-+..+++..|+.|+.........+                  
T Consensus        13 ~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~------------------   74 (160)
T PF02882_consen   13 PGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ------------------   74 (160)
T ss_dssp             TSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH------------------
T ss_pred             CCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc------------------
Confidence            34577777777777777654468999999996 68999999999999999988766643332                  


Q ss_pred             HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664           99 EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        99 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                         +.....|+|+-++|.+..+.  .+.++++..++.+|...
T Consensus        75 ---~~~~~ADIVVsa~G~~~~i~--~~~ik~gavVIDvG~~~  111 (160)
T PF02882_consen   75 ---EITRRADIVVSAVGKPNLIK--ADWIKPGAVVIDVGINY  111 (160)
T ss_dssp             ---HHHTTSSEEEE-SSSTT-B---GGGS-TTEEEEE--CEE
T ss_pred             ---ceeeeccEEeeeeccccccc--cccccCCcEEEecCCcc
Confidence               22346789999999875433  34678888888887643

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.0023  Score=48.87  Aligned_cols=75  Identities=20%  Similarity=0.295  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |++|..+++.+...|.+|+.++++.++.+.+.+.+   +..   ...|..+.+.+.++       .+.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   86 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL   86 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999997 99999999988888999999998876555544432   221   11344554433322       2368


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |+++.+.|.
T Consensus        87 d~li~~ag~   95 (252)
T PRK07035         87 DILVNNAAA   95 (252)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.23  E-value=0.006  Score=44.60  Aligned_cols=96  Identities=24%  Similarity=0.262  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHH---HHcCCCEE-EcCCCHHHHHHhcCCccEEEEcC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAV---ERLGADSF-LVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~---~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      ++++.+||-+|+|. |..++.+++.. +.+|+.++.+++..+.+.   +..+.+.+ +-..+...... .+.||+|+-..
T Consensus        43 l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         43 LPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence            56689999999863 66666666644 569999999987554432   33444321 11122222212 33799998533


Q ss_pred             CC--cccHHHHHhccccCCEEEEeC
Q 027664          115 SA--VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       115 g~--~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      ..  +..+..+.+.++++|+++.+-
T Consensus       121 ~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        121 VASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            22  234667889999999999874

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.22  E-value=0.0034  Score=57.00  Aligned_cols=96  Identities=19%  Similarity=0.224  Sum_probs=69.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHC-CCe-------------EEEEeCCccchHHHHHHc-CCC-EEEcCCCHHHHHHhcC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAM-GVK-------------VTVISTSPSKKSEAVERL-GAD-SFLVSRDQDEMQAAMG  105 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~-g~~-------------vi~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~  105 (220)
                      ..++|+|+|+|.+|...+..+... +++             |++.+.+.++.+++.+.+ +++ ..+|..+.+.+.++..
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            456899999999999999877543 434             666776766666665555 432 3456777777777666


Q ss_pred             CccEEEEcCCCcccHHHHHhccccCCEEEEeC
Q 027664          106 TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       106 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      ++|+|+.|++...+...+..+++.+-+++...
T Consensus       648 ~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek  679 (1042)
T PLN02819        648 QVDVVISLLPASCHAVVAKACIELKKHLVTAS  679 (1042)
T ss_pred             CCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence            79999999998766777777887777776654

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0036  Score=47.87  Aligned_cols=74  Identities=22%  Similarity=0.349  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC----CEEEcCCCHHHHHHh-------cCCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----DSFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      .++++||.|+ |.+|..+++.+...|++|+.+.++.+... ....+..    ....|..+.+.+.++       .+++|+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAE-VAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4789999997 99999999888888999999988765332 2233321    122355554433332       237899


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      ++.++|.
T Consensus        93 vi~~ag~   99 (255)
T PRK06841         93 LVNSAGV   99 (255)
T ss_pred             EEECCCC
Confidence            9999985

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.22  E-value=0.0039  Score=48.36  Aligned_cols=96  Identities=17%  Similarity=0.214  Sum_probs=70.6

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ...||+.......+...+---.|++++|+|- .-+|.-++.++...|+.|+++...-..                     
T Consensus       142 ~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~---------------------  200 (287)
T PRK14176        142 GLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDD---------------------  200 (287)
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCC---------------------
Confidence            3567776666776766653247999999997 569999999999999999877643211                     


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +++.+..+|+++-++|.+..+  --+.+++|-.++.+|..
T Consensus       201 l~~~~~~ADIvv~AvG~p~~i--~~~~vk~gavVIDvGin  238 (287)
T PRK14176        201 LKKYTLDADILVVATGVKHLI--KADMVKEGAVIFDVGIT  238 (287)
T ss_pred             HHHHHhhCCEEEEccCCcccc--CHHHcCCCcEEEEeccc
Confidence            233445789999999988644  34578888888898864

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.21  E-value=0.0048  Score=45.12  Aligned_cols=97  Identities=21%  Similarity=0.212  Sum_probs=58.2

Q ss_pred             hhcCCCCCCEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccchHHHHHHcCCCEE-EcCCCHH---HHHHhc--CCcc
Q 027664           36 FYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADSF-LVSRDQD---EMQAAM--GTMD  108 (220)
Q Consensus        36 ~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~---~~~~~~--~~~d  108 (220)
                      +...+++|++||.+|+|+-+.......+..+ .+|++++.++..     +..+++.+ .|..+.+   .+.+..  +++|
T Consensus        26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D  100 (188)
T TIGR00438        26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVD  100 (188)
T ss_pred             HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence            3445689999999999865554433333333 389999998753     11234322 2333322   222222  3799


Q ss_pred             EEEE-cC----CC------------cccHHHHHhccccCCEEEEeC
Q 027664          109 GIID-TV----SA------------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       109 ~v~d-~~----g~------------~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      +|+. ..    |.            ...+..+.+.|+++|+++...
T Consensus       101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438       101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            9994 32    22            124566788999999999864

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.21  E-value=0.001  Score=45.24  Aligned_cols=88  Identities=17%  Similarity=0.313  Sum_probs=53.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc-cchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      +.-+|-|+|+|-+|..+...++..|..|..+.... +..+++...++...+.+      ..+..+.+|++|-|+..+ .+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~------~~~~~~~aDlv~iavpDd-aI   81 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILD------LEEILRDADLVFIAVPDD-AI   81 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----------TTGGGCC-SEEEE-S-CC-HH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccc------cccccccCCEEEEEechH-HH
Confidence            34578999999999999999999999988876543 34455544444433332      223345799999999988 57


Q ss_pred             HHHHhccccC-----CEEEEe
Q 027664          121 MPLIGLLKSQ-----GKLVLL  136 (220)
Q Consensus       121 ~~~~~~l~~~-----G~~v~~  136 (220)
                      ......|...     |+++.-
T Consensus        82 ~~va~~La~~~~~~~g~iVvH  102 (127)
T PF10727_consen   82 AEVAEQLAQYGAWRPGQIVVH  102 (127)
T ss_dssp             HHHHHHHHCC--S-TT-EEEE
T ss_pred             HHHHHHHHHhccCCCCcEEEE
Confidence            7776666554     555543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.20  E-value=0.005  Score=46.08  Aligned_cols=116  Identities=12%  Similarity=-0.034  Sum_probs=68.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc-chHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      ++.+|||+|+|.++.-=+..+...|++|++++..-. ....+. ..|.-..+ ..+.+  .....++++||-|++.+..-
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~-~~~~i~~~-~r~~~--~~dl~g~~LViaATdD~~vN   99 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLK-KYGNLKLI-KGNYD--KEFIKDKHLIVIATDDEKLN   99 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHH-hCCCEEEE-eCCCC--hHHhCCCcEEEECCCCHHHH
Confidence            578999999999998888888889999998887643 223332 22221111 11111  11235899999999987533


Q ss_pred             HHHHhccccCCEEEEeCCCCCCCCCCchhhhcC-CeEEEEEe
Q 027664          121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG-RKIVGGSL  161 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~  161 (220)
                      +......+..|.++.........+|-.+.++.+ .+++.-+.
T Consensus       100 ~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST  141 (223)
T PRK05562        100 NKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNT  141 (223)
T ss_pred             HHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEEC
Confidence            344444455576666544333344444433333 45554443

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=97.20  E-value=0.0036  Score=49.91  Aligned_cols=75  Identities=16%  Similarity=0.195  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCC--CeEEEEeCCccchHHHHHHcC---CCEE-EcCCCHHHHHHhcCCccEEEEcC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERLG---ADSF-LVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~~g---~~~~-~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      .|.++||.|+ |.+|..+++.+...|  .+|++.+++..+...+.+.+.   ...+ .|..+.+.+.+...++|+||.++
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~A   82 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA   82 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECc
Confidence            4688999997 999999998776665  588888876554433333332   2111 35566666766667899999998


Q ss_pred             CC
Q 027664          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      |.
T Consensus        83 g~   84 (324)
T TIGR03589        83 AL   84 (324)
T ss_pred             cc
Confidence            74

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.19  E-value=0.0045  Score=46.91  Aligned_cols=75  Identities=24%  Similarity=0.331  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      ++.+++|.|+ |.+|..++..+...|..|+...++.++.+.+...++...   ..|-.+.+.++++       .+++|.+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDIL   84 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4678999997 999999998888889988888887766666545444321   1344444443332       2479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      |.++|.
T Consensus        85 i~~ag~   90 (245)
T PRK12936         85 VNNAGI   90 (245)
T ss_pred             EECCCC
Confidence            999884

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.19  E-value=0.0025  Score=48.98  Aligned_cols=72  Identities=19%  Similarity=0.289  Sum_probs=50.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC--EEEcCCCHHHHHHh-------cCCccEEE
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD--SFLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~--~~~~~~~~~~~~~~-------~~~~d~v~  111 (220)
                      ++||.|+ +++|..+++.+...|++|+.+++++++.++..+++   +..  ...|..+.+.++++       .+++|+++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li   81 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV   81 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            6899997 89999999888888999999998877655554433   211  12344554443332       24799999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      ++.|.
T Consensus        82 ~naG~   86 (259)
T PRK08340         82 WNAGN   86 (259)
T ss_pred             ECCCC
Confidence            99874

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.19  E-value=0.0077  Score=45.57  Aligned_cols=99  Identities=26%  Similarity=0.347  Sum_probs=70.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCC---CEE-EcCCCHHHHHHhcC-CccEEEEc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA---DSF-LVSRDQDEMQAAMG-TMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~---~~~-~~~~~~~~~~~~~~-~~d~v~d~  113 (220)
                      ..+|.+||=+|+| +|-++..+++..|- +|++++-+++-+....++..-   ..+ +...+.+.+. +.+ .||+|.-+
T Consensus        49 ~~~g~~vLDva~G-TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~  126 (238)
T COG2226          49 IKPGDKVLDVACG-TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTIS  126 (238)
T ss_pred             CCCCCEEEEecCC-ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEee
Confidence            4589999999887 59999999999886 999999999877766555431   111 1122322222 223 79998766


Q ss_pred             CCC------cccHHHHHhccccCCEEEEeCCCC
Q 027664          114 VSA------VHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       114 ~g~------~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .|-      +..+.++.+.|+|||+++.+....
T Consensus       127 fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         127 FGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             ehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            664      235788999999999999987654

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.19  E-value=0.007  Score=47.14  Aligned_cols=76  Identities=26%  Similarity=0.259  Sum_probs=56.8

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-E-------cCCCHH----HHHHhc---
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-L-------VSRDQD----EMQAAM---  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~-------~~~~~~----~~~~~~---  104 (220)
                      ++..+++|.|+ .++|++.+.-++..|++|.++.++.++.+++++.++.... .       |-.+.+    .++++.   
T Consensus        31 k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~  110 (331)
T KOG1210|consen   31 KPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLE  110 (331)
T ss_pred             CccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhcc
Confidence            45578999975 8999999999999999999999999999999888874221 1       111112    223332   


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      ..+|.+|.|+|.
T Consensus       111 ~~~d~l~~cAG~  122 (331)
T KOG1210|consen  111 GPIDNLFCCAGV  122 (331)
T ss_pred             CCcceEEEecCc
Confidence            379999999997

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=97.18  E-value=0.0032  Score=50.79  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=53.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc--C--CCEE-EcCCCHHHHHHhcCCccEEEEcC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--G--ADSF-LVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~--g--~~~~-~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      ..+.+|||.|+ |.+|..+++.+...|.+|++++++.++...+...+  +  ...+ .|..+.+.+.+...++|+||.++
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   87 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA   87 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence            45788999997 99999999988888999999888765544433332  1  1111 24445555666666899999998


Q ss_pred             CC
Q 027664          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      +.
T Consensus        88 ~~   89 (353)
T PLN02896         88 AS   89 (353)
T ss_pred             cc
Confidence            74

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.18  E-value=0.0078  Score=48.11  Aligned_cols=86  Identities=22%  Similarity=0.291  Sum_probs=60.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~--  119 (220)
                      .|.+|.|+|.|.+|..+++.++.+|.+|++.+++.......     ..    ..  ..+.+.....|+|+-+++....  
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----~~----~~--~~l~ell~~aDiVil~lP~t~~t~  213 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----LT----YK--DSVKEAIKDADIISLHVPANKESY  213 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----hh----cc--CCHHHHHhcCCEEEEeCCCcHHHH
Confidence            56789999999999999999999999999999876432111     11    11  1234455678999999876421  


Q ss_pred             ---HHHHHhccccCCEEEEeCC
Q 027664          120 ---LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ---~~~~~~~l~~~G~~v~~g~  138 (220)
                         -...+..++++..++.++-
T Consensus       214 ~li~~~~l~~mk~gavlIN~aR  235 (330)
T PRK12480        214 HLFDKAMFDHVKKGAILVNAAR  235 (330)
T ss_pred             HHHhHHHHhcCCCCcEEEEcCC
Confidence               2345678888888887753

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=97.18  E-value=0.0043  Score=49.94  Aligned_cols=87  Identities=14%  Similarity=0.051  Sum_probs=56.9

Q ss_pred             hhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHH----HHHHcC------CCEE-EcCCC
Q 027664           29 TVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSE----AVERLG------ADSF-LVSRD   96 (220)
Q Consensus        29 ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~----~~~~~g------~~~~-~~~~~   96 (220)
                      |||.-++.-.. -.+++|||.|+ |-+|..++..+...|.+|+++++.......    +....+      ...+ .|..+
T Consensus         2 ~~~~~~~~~~~-~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (348)
T PRK15181          2 TAYEELRTKLV-LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK   80 (348)
T ss_pred             chhhhhhhccc-ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCC
Confidence            56766654443 44578999997 999999999988889999999875432211    111111      1112 24444


Q ss_pred             HHHHHHhcCCccEEEEcCCC
Q 027664           97 QDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        97 ~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+.+.+...++|+||.+++.
T Consensus        81 ~~~l~~~~~~~d~ViHlAa~  100 (348)
T PRK15181         81 FTDCQKACKNVDYVLHQAAL  100 (348)
T ss_pred             HHHHHHHhhCCCEEEECccc
Confidence            55555655689999999863

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.18  E-value=0.0047  Score=48.29  Aligned_cols=95  Identities=17%  Similarity=0.197  Sum_probs=69.7

Q ss_pred             cccchhhhhhhHHHhhcCCCCCCEEEEEc-cchhHHHHHHHHHHCCCeEEEEe-CCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~g~~G~~~~~la~~~g~~vi~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ..||+..+....+...+---.|++|+|+| .+.+|.-++.++...|+.|++.. ++.+                      
T Consensus       137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~----------------------  194 (296)
T PRK14188        137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD----------------------  194 (296)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC----------------------
Confidence            46777666666666655335799999999 59999999999999999999884 4321                      


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +.+.....|+|+-|+|.+..+...  .+++|..++.+|...
T Consensus       195 l~e~~~~ADIVIsavg~~~~v~~~--~lk~GavVIDvGin~  233 (296)
T PRK14188        195 LPAVCRRADILVAAVGRPEMVKGD--WIKPGATVIDVGINR  233 (296)
T ss_pred             HHHHHhcCCEEEEecCChhhcchh--eecCCCEEEEcCCcc
Confidence            223334679999999988654443  388888888888643

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.18  E-value=0.0028  Score=50.43  Aligned_cols=75  Identities=20%  Similarity=0.227  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---C----CCE-EEcCCCHHHHHHhcCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G----ADS-FLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g----~~~-~~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .++++||.|+ |.+|..++..+...|.+|+++.++..+.......+   +    ... ..|..+.+.+.+...++|+||.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            4689999997 99999999988888999988877765433321111   1    111 1244555566666668999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        84 ~A~~   87 (325)
T PLN02989         84 TASP   87 (325)
T ss_pred             eCCC
Confidence            9874

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.18  E-value=0.0041  Score=47.60  Aligned_cols=75  Identities=20%  Similarity=0.270  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-chHHHHHHcCCC---EEEcCCCHHHHHHh-------cCCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~~~~~g~~---~~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      .++++||.|+ +++|..+++.+...|++|+++.+++. +.....+..+.+   ...|..+.+.++++       .+++|+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~   86 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDI   86 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999997 89999999988889999998876542 122222334432   22455565544332       247999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      ++++.|.
T Consensus        87 lv~~ag~   93 (251)
T PRK12481         87 LINNAGI   93 (251)
T ss_pred             EEECCCc
Confidence            9999874

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.17  E-value=0.0025  Score=48.74  Aligned_cols=75  Identities=20%  Similarity=0.381  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|+.++++.++.....+++   +...   ..|-.+.+.+.++       .+++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   87 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI   87 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999997 99999999888888999999998876655543333   2211   1344554433332       2369


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |+++.+.|.
T Consensus        88 d~vi~~ag~   96 (254)
T PRK08085         88 DVLINNAGI   96 (254)
T ss_pred             CEEEECCCc
Confidence            999999984

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0036  Score=48.54  Aligned_cols=73  Identities=19%  Similarity=0.256  Sum_probs=51.9

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccEEEE
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      +++||.|+ |.+|..+++.+...|.+|+++.++.++.+.+.+..+...   ..|..+.+.+.+.       .+++|++|.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   82 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS   82 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            57999997 999999998888889999999998876666544433221   2355555443322       236899999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        83 ~ag~   86 (276)
T PRK06482         83 NAGY   86 (276)
T ss_pred             CCCC
Confidence            9875

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.17  E-value=0.0032  Score=48.93  Aligned_cols=99  Identities=17%  Similarity=0.218  Sum_probs=64.8

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCc---cchHHHHHHcCCC--EEEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSP---SKKSEAVERLGAD--SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~---~~~~~~~~~~g~~--~~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+   +++|.++++.+...|++|+++.++.   ++.+++.+.++..  ...|..+.+.++++       .+.
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~   83 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGK   83 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4789999996   4899999988888899999988774   2333343444532  22455665443332       247


Q ss_pred             ccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          107 MDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +|++++++|...                             ..+..+..+.++|+++.++...
T Consensus        84 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~  146 (274)
T PRK08415         84 IDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLG  146 (274)
T ss_pred             CCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCC
Confidence            999999988410                             0133445666779998876543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.17  E-value=0.0025  Score=46.01  Aligned_cols=32  Identities=28%  Similarity=0.534  Sum_probs=27.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~   76 (220)
                      +|+|+|+|++|..+++.+...|. +++.++...
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999998888899 788888765

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.17  E-value=0.0027  Score=48.25  Aligned_cols=75  Identities=23%  Similarity=0.328  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE---EEcCCCHHHHHHhc-------CCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |.+|..++..+...|.+|++++++.++.....+.   .+.+.   ..|..+.+.+.+..       +.+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   84 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL   84 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4678999997 9999999988888899999999986544433222   22211   12445544443322       368


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.+.|.
T Consensus        85 d~vi~~ag~   93 (251)
T PRK12826         85 DILVANAGI   93 (251)
T ss_pred             CEEEECCCC
Confidence            999999865

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.16  E-value=0.002  Score=51.62  Aligned_cols=77  Identities=26%  Similarity=0.390  Sum_probs=50.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCcc---------------------chHHH---HHHcCCCEEEcC--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS---------------------KKSEA---VERLGADSFLVS--   94 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~---------------------~~~~~---~~~~g~~~~~~~--   94 (220)
                      ...+|+|+|+|++|..+++.+...|. ++++++...-                     |.+.+   .+++..+.-+..  
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~  102 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV  102 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            45789999999999999999999999 8888887531                     11111   122322111111  


Q ss_pred             --CCHHHHHHhcCCccEEEEcCCCcc
Q 027664           95 --RDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        95 --~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                        -..+.+.++..++|+|+||+.+..
T Consensus       103 ~~~~~~~~~~~~~~~DlVid~~Dn~~  128 (339)
T PRK07688        103 QDVTAEELEELVTGVDLIIDATDNFE  128 (339)
T ss_pred             ccCCHHHHHHHHcCCCEEEEcCCCHH
Confidence              113344555678999999999864

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=97.15  E-value=0.018  Score=44.06  Aligned_cols=155  Identities=17%  Similarity=0.176  Sum_probs=83.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCC----
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA----  116 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~----  116 (220)
                      .++.+||-+|+|. |..+..+++ .|.+++.++.+++..+.+.+.......+.. +.+.+.-..+.||+|+....-    
T Consensus        41 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~-d~~~~~~~~~~fD~V~s~~~l~~~~  117 (251)
T PRK10258         41 RKFTHVLDAGCGP-GWMSRYWRE-RGSQVTALDLSPPMLAQARQKDAADHYLAG-DIESLPLATATFDLAWSNLAVQWCG  117 (251)
T ss_pred             cCCCeEEEeeCCC-CHHHHHHHH-cCCeEEEEECCHHHHHHHHhhCCCCCEEEc-CcccCcCCCCcEEEEEECchhhhcC
Confidence            4578899999875 666655554 588999999998776666443332222211 111111111369999854321    


Q ss_pred             --cccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcC-CeEEEEEecCCHHHHHHHHHHHHcCCCccce--EEeeccc
Q 027664          117 --VHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG-RKIVGGSLIGGLKETQEMIDFAAKHNIRADI--EVIPADY  191 (220)
Q Consensus       117 --~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~--~~~~~~~  191 (220)
                        ...+..+.+.++++|.++......+...- ....+.. ..........+.+++...+   ..-.+....  .++.+++
T Consensus       118 d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~e-l~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~~~~~~~~f~~  193 (251)
T PRK10258        118 NLSTALRELYRVVRPGGVVAFTTLVQGSLPE-LHQAWQAVDERPHANRFLPPDAIEQAL---NGWRYQHHIQPITLWFDD  193 (251)
T ss_pred             CHHHHHHHHHHHcCCCeEEEEEeCCCCchHH-HHHHHHHhccCCccccCCCHHHHHHHH---HhCCceeeeeEEEEECCC
Confidence              12467788999999999987554322110 0111100 0001111222334444333   332333333  4567888


Q ss_pred             HHHHHHHHHcC
Q 027664          192 VNTAMERLAKA  202 (220)
Q Consensus       192 ~~~a~~~~~~~  202 (220)
                      ..+.++.++.-
T Consensus       194 ~~~~l~~lk~~  204 (251)
T PRK10258        194 ALSAMRSLKGI  204 (251)
T ss_pred             HHHHHHHHHHh
Confidence            88888877643

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.15  E-value=0.0034  Score=48.51  Aligned_cols=75  Identities=21%  Similarity=0.322  Sum_probs=54.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---C-C-CEEEcCCCHHHH-------HHhcCCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G-A-DSFLVSRDQDEM-------QAAMGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g-~-~~~~~~~~~~~~-------~~~~~~~d  108 (220)
                      .|+.|||.|+ +++|.+.++-...+|++++..+.+.+-.++..+..   | + .+..|-++.+++       ++..+.+|
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~  116 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDVD  116 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCce
Confidence            6889999997 79999998877777999999998877655554443   3 2 455666765543       33345799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++++-+|-
T Consensus       117 ILVNNAGI  124 (300)
T KOG1201|consen  117 ILVNNAGI  124 (300)
T ss_pred             EEEecccc
Confidence            99998875

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0022  Score=48.97  Aligned_cols=75  Identities=21%  Similarity=0.245  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |++|..+++.+...|++|+.++++.++.+.+.+.   .+..   ...|..+.+.+.++       .+.+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   85 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL   85 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            4689999997 9999999988888899999999987654443332   2321   12344444433322       2468


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |+++.+.|.
T Consensus        86 d~li~~ag~   94 (253)
T PRK06172         86 DYAFNNAGI   94 (253)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.14  E-value=0.0033  Score=48.21  Aligned_cols=74  Identities=16%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHH---HHcCCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~---~~~g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|+++.++ ++.+.+.   ...+.+   ...|..+.+.+.++       .+++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   92 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKI   92 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 999999999888899999998887 3333332   223322   22355555444332       2368


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |+++.+.|.
T Consensus        93 d~li~~ag~  101 (258)
T PRK06935         93 DILVNNAGT  101 (258)
T ss_pred             CEEEECCCC
Confidence            999999875

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.14  E-value=0.0054  Score=45.90  Aligned_cols=37  Identities=32%  Similarity=0.393  Sum_probs=32.4

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ..|.+|.|.|.|.+|..+++++...|++++.+.++..
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            4689999999999999999999999998777776655

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.12  E-value=0.0034  Score=48.42  Aligned_cols=75  Identities=17%  Similarity=0.265  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ +++|..++..+...|++|+++.++.++.+.....+   +..   ...|-.+.+.++++       .+++
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI   88 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            5788999997 89999999887788999999988876655443333   322   12455554443332       2469


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |+++.++|.
T Consensus        89 d~li~~ag~   97 (265)
T PRK07097         89 DILVNNAGI   97 (265)
T ss_pred             CEEEECCCC
Confidence            999999885

>PRK07985 oxidoreductase; Provisional

Probab=97.12  E-value=0.012  Score=46.32  Aligned_cols=76  Identities=16%  Similarity=0.105  Sum_probs=48.8

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc--chHHHH---HHcCCC---EEEcCCCHHHHHHh-------c
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS--KKSEAV---ERLGAD---SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~--~~~~~~---~~~g~~---~~~~~~~~~~~~~~-------~  104 (220)
                      ..++++||.|+ |++|..+++.+...|++|+++.++.+  ..+++.   +..+..   ...|..+.+.+.++       .
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35688999997 99999999888888999988765432  222222   223322   22355554433322       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|+++.+.|.
T Consensus       127 g~id~lv~~Ag~  138 (294)
T PRK07985        127 GGLDIMALVAGK  138 (294)
T ss_pred             CCCCEEEECCCC
Confidence            478999998874

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=97.12  E-value=0.0018  Score=46.04  Aligned_cols=74  Identities=23%  Similarity=0.337  Sum_probs=47.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCC--ccchHHHHHHc---CCCEE---EcCCCHHHHHHh-------cCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTS--PSKKSEAVERL---GADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~-~vi~~~~~--~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~-------~~~  106 (220)
                      ++++|.|+ +++|..+++.+...|. +|+.+.++  .++.+++..++   +....   .|..+.+.++++       .+.
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46899997 9999999987776677 77777777  44444443333   43211   234444433332       247


Q ss_pred             ccEEEEcCCCc
Q 027664          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~v~d~~g~~  117 (220)
                      +|++|.+.|..
T Consensus        81 ld~li~~ag~~   91 (167)
T PF00106_consen   81 LDILINNAGIF   91 (167)
T ss_dssp             ESEEEEECSCT
T ss_pred             ccccccccccc
Confidence            99999998863

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.0039  Score=47.77  Aligned_cols=74  Identities=22%  Similarity=0.284  Sum_probs=52.1

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC---CCE-EEcCCCHHHHHHhc-------CCccEE
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---ADS-FLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g---~~~-~~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      +++++|.|+ |.+|..++..+...|++|++++++.++.+.+.+.+.   +.. ..|..+.+.+....       +++|++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL   81 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            468999997 999999998887889999999988776665554442   211 23455554443221       369999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      +.+.|.
T Consensus        82 i~~ag~   87 (257)
T PRK07074         82 VANAGA   87 (257)
T ss_pred             EECCCC
Confidence            999975

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.11  E-value=0.0042  Score=49.26  Aligned_cols=84  Identities=20%  Similarity=0.259  Sum_probs=59.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc-c-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH-P-  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~-  119 (220)
                      .|+++.|+|-|.+|..+++.++.+|.+|+...+....      .....    +.   .+.++....|+|.-+++-.. + 
T Consensus       146 ~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~------~~~~~----~~---~l~ell~~sDiv~l~~Plt~~T~  212 (314)
T PRK06932        146 RGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS------VCREG----YT---PFEEVLKQADIVTLHCPLTETTQ  212 (314)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc------ccccc----cC---CHHHHHHhCCEEEEcCCCChHHh
Confidence            4789999999999999999999999999988654311      11110    11   24445557899988776321 1 


Q ss_pred             ---HHHHHhccccCCEEEEeCC
Q 027664          120 ---LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ---~~~~~~~l~~~G~~v~~g~  138 (220)
                         =...++.|+++..++.++-
T Consensus       213 ~li~~~~l~~mk~ga~lIN~aR  234 (314)
T PRK06932        213 NLINAETLALMKPTAFLINTGR  234 (314)
T ss_pred             cccCHHHHHhCCCCeEEEECCC
Confidence               1457788999999988864

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=97.10  E-value=0.0042  Score=49.33  Aligned_cols=75  Identities=21%  Similarity=0.253  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---C----CCEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G----ADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g----~~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .|++|||.|+ |.+|..+++.+...|.+|+++.++.++.+......   +    ...+ .|..+.+.+.+...++|+||.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            4789999997 99999999888888999998888765433221111   1    1111 233444556666668999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      +++.
T Consensus        84 ~A~~   87 (322)
T PLN02986         84 TASP   87 (322)
T ss_pred             eCCC
Confidence            9874

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.10  E-value=0.0025  Score=47.07  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=29.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      ...+|+|.|+|++|..+++.+...|. +++.++..
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            34779999999999999999988999 78888877

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.10  E-value=0.015  Score=43.26  Aligned_cols=118  Identities=14%  Similarity=0.058  Sum_probs=74.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc-cchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      -.|++|||+|+|.+|.-=+.++...|++|+++.... ++...+....+.+.+    +...-.....++++||=|++++..
T Consensus        10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~----~~~~~~~~~~~~~lviaAt~d~~l   85 (210)
T COG1648          10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWI----EREFDAEDLDDAFLVIAATDDEEL   85 (210)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchh----hcccChhhhcCceEEEEeCCCHHH
Confidence            367899999999999999999999999999988886 333333333332211    111111112258999999998754


Q ss_pred             HHHHHhccccCCEEEEeCCCCCCCCCCchhhhc-CCeEEEEEec
Q 027664          120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT-GRKIVGGSLI  162 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~  162 (220)
                      -+.....++..+.+|..........+..+..+. +.+.+.-+..
T Consensus        86 n~~i~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~  129 (210)
T COG1648          86 NERIAKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTG  129 (210)
T ss_pred             HHHHHHHHHHhCCceeccCCcccCceecceeeccCCeEEEEECC
Confidence            456667777788888876655444444443333 3445444433

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.10  E-value=0.0048  Score=46.96  Aligned_cols=75  Identities=23%  Similarity=0.275  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-chHHHHHHcCCC---EEEcCCCHHHHHH----h---cCCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGAD---SFLVSRDQDEMQA----A---MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~~~~~g~~---~~~~~~~~~~~~~----~---~~~~d~  109 (220)
                      .++++||.|+ |++|..+++.+...|++|+.++++.. +.....+.++..   ...|..+.+.+.+    .   .+++|+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   83 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDI   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999997 89999999888888999999987652 112222334422   1234455443332    2   247999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus        84 li~~ag~   90 (248)
T TIGR01832        84 LVNNAGI   90 (248)
T ss_pred             EEECCCC
Confidence            9999875

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.10  E-value=0.0041  Score=48.28  Aligned_cols=77  Identities=16%  Similarity=0.216  Sum_probs=51.4

Q ss_pred             CCCCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCc---cchHHHHHHcCCC--EEEcCCCHHHHHHh-------c
Q 027664           40 DKPGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSP---SKKSEAVERLGAD--SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        40 ~~~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~---~~~~~~~~~~g~~--~~~~~~~~~~~~~~-------~  104 (220)
                      +..++++||.|+   +++|..+++.+...|++|+.+.+++   ++.+++.++++..  ...|-.+.+.++++       .
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   86 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW   86 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence            456789999986   5899999988888999998887653   2334444445532  22455554443332       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +.+|++++++|.
T Consensus        87 g~iD~lv~nAG~   98 (272)
T PRK08159         87 GKLDFVVHAIGF   98 (272)
T ss_pred             CCCcEEEECCcc
Confidence            369999999873

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0036  Score=47.61  Aligned_cols=74  Identities=20%  Similarity=0.294  Sum_probs=50.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-----CCC---EEEcCCCHHHHHH----h---cCC
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GAD---SFLVSRDQDEMQA----A---MGT  106 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-----g~~---~~~~~~~~~~~~~----~---~~~  106 (220)
                      +++++|.|+ |++|..+++.+...|.+|+++++++++...+...+     +..   ...|..+.+.+.+    +   .++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            568999997 99999999877778999999999877655543322     211   1235555443322    2   247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|.++|.
T Consensus        82 id~vi~~ag~   91 (248)
T PRK08251         82 LDRVIVNAGI   91 (248)
T ss_pred             CCEEEECCCc
Confidence            9999999873

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.022  Score=43.11  Aligned_cols=75  Identities=19%  Similarity=0.223  Sum_probs=48.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHHH---HcCCC-E--EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVE---RLGAD-S--FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~~---~~g~~-~--~~~~~~~~~~~~~-------~~~  106 (220)
                      ++++++|.|+ |++|..+++.+...|.+++.+.++... .....+   ..+.. .  ..|..+.+.+.+.       .++
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGR   83 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5688999997 999999999988899998877765432 222222   22321 1  1244444433322       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|.++|.
T Consensus        84 id~vi~~ag~   93 (245)
T PRK12937         84 IDVLVNNAGV   93 (245)
T ss_pred             CCEEEECCCC
Confidence            9999999884

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.09  E-value=0.0038  Score=49.63  Aligned_cols=120  Identities=17%  Similarity=0.252  Sum_probs=75.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc-cc--
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV-HP--  119 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~--  119 (220)
                      |+++-|+|.|.+|..+++.++.+|.+|++.++...+-  .....+.   .-   .+.+.++....|++.-.+.-. ++  
T Consensus       142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~--~~~~~~~---~~---~~~Ld~lL~~sDiv~lh~PlT~eT~g  213 (324)
T COG0111         142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE--RAGVDGV---VG---VDSLDELLAEADILTLHLPLTPETRG  213 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh--hhccccc---ee---cccHHHHHhhCCEEEEcCCCCcchhc
Confidence            7899999999999999999999999999999943321  1111121   11   122444445678887666532 11  


Q ss_pred             --HHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccc-eEEeecccHHH
Q 027664          120 --LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRAD-IEVIPADYVNT  194 (220)
Q Consensus       120 --~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~-~~~~~~~~~~~  194 (220)
                        =...+..|++|..++.++-..                        .-+.+.+++++.+|++.-- +++|+-|-.++
T Consensus       214 ~i~~~~~a~MK~gailIN~aRG~------------------------vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~  267 (324)
T COG0111         214 LINAEELAKMKPGAILINAARGG------------------------VVDEDALLAALDSGKIAGAALDVFEEEPLPA  267 (324)
T ss_pred             ccCHHHHhhCCCCeEEEECCCcc------------------------eecHHHHHHHHHcCCcceEEecCCCCCCCCC
Confidence              135667787777777664311                        1245667777778877743 35555443333

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.0035  Score=48.08  Aligned_cols=76  Identities=18%  Similarity=0.274  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCe-EEEEeCCccchHHHHH---HcCCC---EEEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVK-VTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~-vi~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~~~-------~~  105 (220)
                      ..+++++|.|+ |++|..+++.+...|++ |++++++.++......   ..+..   ...|..+.+.+.+.       .+
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG   83 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            35688999997 99999999988889997 9988887654443322   23332   22355555444332       13


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|.+|++.|.
T Consensus        84 ~id~li~~ag~   94 (260)
T PRK06198         84 RLDALVNAAGL   94 (260)
T ss_pred             CCCEEEECCCc
Confidence            79999999985

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.08  E-value=0.012  Score=46.68  Aligned_cols=85  Identities=28%  Similarity=0.346  Sum_probs=60.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc-cc-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV-HP-  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~-  119 (220)
                      .|+++.|+|-|.+|..+++.++.+|.+|+..++.....     ..+..    +.   .+.++....|+|.-++.-. ++ 
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-----~~~~~----~~---~l~ell~~sDvv~lh~Plt~~T~  211 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-----NEEYE----RV---SLEELLKTSDIISIHAPLNEKTK  211 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc-----ccCce----ee---cHHHHhhcCCEEEEeCCCCchhh
Confidence            57899999999999999999999999999998764211     11221    11   2445555679998777532 21 


Q ss_pred             ---HHHHHhccccCCEEEEeCC
Q 027664          120 ---LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ---~~~~~~~l~~~G~~v~~g~  138 (220)
                         =...++.|+++..++.++-
T Consensus       212 ~li~~~~~~~Mk~~a~lIN~aR  233 (311)
T PRK08410        212 NLIAYKELKLLKDGAILINVGR  233 (311)
T ss_pred             cccCHHHHHhCCCCeEEEECCC
Confidence               2467889999999998864

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.08  E-value=0.0045  Score=46.40  Aligned_cols=93  Identities=29%  Similarity=0.351  Sum_probs=61.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCCEEEcCCCH--HHHHHhcCCccEEEE----
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADSFLVSRDQ--DEMQAAMGTMDGIID----  112 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~--~~~~~~~~~~d~v~d----  112 (220)
                      +|.+||=+|||+ |+++.-+|+. |++|+.++-+++-.+.+..   +-|..  +|+...  +.+.+..+.||+|+.    
T Consensus        59 ~g~~vLDvGCGg-G~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVl  134 (243)
T COG2227          59 PGLRVLDVGCGG-GILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVL  134 (243)
T ss_pred             CCCeEEEecCCc-cHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHH
Confidence            788999999863 6666666655 8999999999876655531   12222  445442  233333357999974    


Q ss_pred             -cCCCcc-cHHHHHhccccCCEEEEeCC
Q 027664          113 -TVSAVH-PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 -~~g~~~-~~~~~~~~l~~~G~~v~~g~  138 (220)
                       =+..+. .+..+.++++|+|.+.....
T Consensus       135 EHv~dp~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         135 EHVPDPESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             HccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence             244433 35668889999999988754

>PRK08264 short chain dehydrogenase; Validated

Probab=97.08  E-value=0.0037  Score=47.29  Aligned_cols=71  Identities=25%  Similarity=0.316  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcC--CCE-EEcCCCHHHHHHhc---CCccEEEEc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG--ADS-FLVSRDQDEMQAAM---GTMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g--~~~-~~~~~~~~~~~~~~---~~~d~v~d~  113 (220)
                      .+++++|.|+ |.+|..+++.+...|. +|+.++++.++...    .+  +.. ..|..+.+.+.+..   +.+|++|.+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   80 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNN   80 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence            5678999997 9999999998888999 99999988754332    22  221 23555555554443   368999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        81 ag~   83 (238)
T PRK08264         81 AGI   83 (238)
T ss_pred             CCc
Confidence            986

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=97.08  E-value=0.0035  Score=48.02  Aligned_cols=75  Identities=19%  Similarity=0.310  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |++|..++..+...|++++.++++.++.+.+...   .+.+   ...|..+.+.++++       .+++
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~   89 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV   89 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999997 9999999988888899999998887665544332   2322   12355555443332       2478


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |+++.++|.
T Consensus        90 d~li~~ag~   98 (255)
T PRK06113         90 DILVNNAGG   98 (255)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.08  E-value=0.006  Score=46.91  Aligned_cols=75  Identities=21%  Similarity=0.340  Sum_probs=50.1

Q ss_pred             CCCEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCccc---hHHHHHHcCCCEE--EcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGLG---GLGHVAVKFAKAMGVKVTVISTSPSK---KSEAVERLGADSF--LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~g---~~G~~~~~la~~~g~~vi~~~~~~~~---~~~~~~~~g~~~~--~~~~~~~~~~~~-------~~~  106 (220)
                      .|+++||.|++   ++|.++++.+...|++|+++.++.+.   .+++.++++....  .|..+.+.++++       .+.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   88 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR   88 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence            57899999963   89999998888889999998877532   2334344443222  354554433322       246


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        89 ld~lv~nAg~   98 (258)
T PRK07533         89 LDFLLHSIAF   98 (258)
T ss_pred             CCEEEEcCcc
Confidence            8999999874

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.08  E-value=0.0045  Score=48.25  Aligned_cols=127  Identities=25%  Similarity=0.294  Sum_probs=73.8

Q ss_pred             cceEeCCCCCCccccccccchhhhhh--hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHH
Q 027664            6 HFVVRIPEGAPLDATAPLLCAGITVY--SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA   82 (220)
Q Consensus         6 ~~~~~ip~~~s~~~aa~~~~~~~ta~--~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~   82 (220)
                      ..++++++.+.|    +......|++  .++.+.  +++|.+||=+|+|+ |.+++..++. |+ +|++++..+...+..
T Consensus       130 ~~~i~lDPGlAF----GTG~HpTT~lcL~~Le~~--~~~g~~vlDvGcGS-GILaIAa~kL-GA~~v~g~DiDp~AV~aa  201 (300)
T COG2264         130 ELNIELDPGLAF----GTGTHPTTSLCLEALEKL--LKKGKTVLDVGCGS-GILAIAAAKL-GAKKVVGVDIDPQAVEAA  201 (300)
T ss_pred             ceEEEEcccccc----CCCCChhHHHHHHHHHHh--hcCCCEEEEecCCh-hHHHHHHHHc-CCceEEEecCCHHHHHHH
Confidence            344555555544    3444545543  233333  47999999999873 7777665554 87 799999887665444


Q ss_pred             HHHc---CCCEEEcCCCHHHHHHhc-CCccEEEEcCCCc---ccHHHHHhccccCCEEEEeCCCC
Q 027664           83 VERL---GADSFLVSRDQDEMQAAM-GTMDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        83 ~~~~---g~~~~~~~~~~~~~~~~~-~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +...   +.+............... +.||+|+--.=..   .......+.++++|++++.|...
T Consensus       202 ~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl~  266 (300)
T COG2264         202 RENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGILE  266 (300)
T ss_pred             HHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeehH
Confidence            3322   232110000011112222 3799987443222   12466788999999999998755

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.07  E-value=0.0036  Score=47.88  Aligned_cols=76  Identities=25%  Similarity=0.333  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCC--CE-EEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA--DS-FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~--~~-~~~~~~~~~~~~~-------~~~  106 (220)
                      -.+++++|.|+ |.+|..+++.+...|++|+.+.++.+....+.+.   .+.  .. ..|..+.+.+.+.       .+.
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            35789999997 9999999988878899999999987655444332   232  11 2344554433322       236


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|.++.++|.
T Consensus        89 id~vi~~ag~   98 (256)
T PRK06124         89 LDILVNNVGA   98 (256)
T ss_pred             CCEEEECCCC
Confidence            8999999885

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.07  E-value=0.0028  Score=50.46  Aligned_cols=75  Identities=13%  Similarity=0.257  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----C-CC---EEEcCCC--HHHH---HHhcC--
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----G-AD---SFLVSRD--QDEM---QAAMG--  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g-~~---~~~~~~~--~~~~---~~~~~--  105 (220)
                      .|++++|.|+ |++|...++.+...|++|+.+++++++.++..+++    + ..   ...|..+  .+..   .+..+  
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            5889999997 89999999877778999999999988776654433    1 11   1234332  2222   22223  


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      .+|++++++|.
T Consensus       132 didilVnnAG~  142 (320)
T PLN02780        132 DVGVLINNVGV  142 (320)
T ss_pred             CccEEEEecCc
Confidence            45689998874

>PRK06720 hypothetical protein; Provisional

Probab=97.07  E-value=0.0051  Score=44.19  Aligned_cols=75  Identities=20%  Similarity=0.257  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      +++.++|.|+ +++|..++..+...|++|++++++.+..+...+.+   +..   ...|..+.+.++++       .+++
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i   94 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI   94 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5788999997 78999999888888999999998766544333332   322   12344443333221       2368


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        95 DilVnnAG~  103 (169)
T PRK06720         95 DMLFQNAGL  103 (169)
T ss_pred             CEEEECCCc
Confidence            888888774

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.06  E-value=0.0041  Score=48.29  Aligned_cols=75  Identities=23%  Similarity=0.341  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +...   ..|..+.+.+.++       .+++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   88 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPC   88 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999997 99999999988888999999998876554443332   3221   2344444433322       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.++|.
T Consensus        89 d~li~~ag~   97 (278)
T PRK08277         89 DILINGAGG   97 (278)
T ss_pred             CEEEECCCC
Confidence            999999883

>PRK12747 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.01  Score=45.32  Aligned_cols=100  Identities=15%  Similarity=0.204  Sum_probs=60.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCccchHHHHHHc---CCCE---EEcCCCHHHH----HHh------
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVERL---GADS---FLVSRDQDEM----QAA------  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~-~~~~~~~~~~~~~---g~~~---~~~~~~~~~~----~~~------  103 (220)
                      .++++||.|+ |++|..+++.+...|++|++.. ++.++.+....++   +...   ..|..+.+.+    .++      
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN   82 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence            4688999997 8999999998888999998875 4434433332222   2211   1233332211    111      


Q ss_pred             -cC--CccEEEEcCCCcc----------cH---------------HHHHhccccCCEEEEeCCCCC
Q 027664          104 -MG--TMDGIIDTVSAVH----------PL---------------MPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       104 -~~--~~d~v~d~~g~~~----------~~---------------~~~~~~l~~~G~~v~~g~~~~  141 (220)
                       .+  ++|++++++|...          .+               +.++..+++.|+++.++....
T Consensus        83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~  148 (252)
T PRK12747         83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAAT  148 (252)
T ss_pred             hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccc
Confidence             12  6999999987420          01               224455666789998876543

>PRK06940 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0051  Score=47.79  Aligned_cols=73  Identities=23%  Similarity=0.385  Sum_probs=49.7

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh------cCCccEE
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA------MGTMDGI  110 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~------~~~~d~v  110 (220)
                      ++.++|.|+|++|..++..+. .|.+|+.++++.++.+++.+.+   +.+   ...|..+.+.+.++      .+++|++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l   80 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGL   80 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence            457888999899999998774 7999999998876655443333   322   12355555433322      1479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        81 i~nAG~   86 (275)
T PRK06940         81 VHTAGV   86 (275)
T ss_pred             EECCCc
Confidence            999985

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0044  Score=46.97  Aligned_cols=76  Identities=13%  Similarity=0.220  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      ..+++++|.|+ |.+|..++..+...|.+|+++++++++.+.+.+.+   +..   ...|..+.+.+.+.       .++
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            34578999997 99999999988888999999999876655443322   221   12344454433222       236


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|+++.++|.
T Consensus        84 id~lv~~ag~   93 (241)
T PRK07454         84 PDVLINNAGM   93 (241)
T ss_pred             CCEEEECCCc
Confidence            9999999985

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0054  Score=46.43  Aligned_cols=75  Identities=23%  Similarity=0.323  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---C---CC-EEEcCCC--HHH-------HHHhc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G---AD-SFLVSRD--QDE-------MQAAM  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g---~~-~~~~~~~--~~~-------~~~~~  104 (220)
                      ++++++|.|+ |++|..+++.+...|.+|++++++.++.+.+.+.+   +   .. .-.|..+  .+.       +.+..
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~   84 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEAT   84 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHh
Confidence            4678999997 99999999888888999999999887655543332   2   11 1123221  111       11212


Q ss_pred             -CCccEEEEcCCC
Q 027664          105 -GTMDGIIDTVSA  116 (220)
Q Consensus       105 -~~~d~v~d~~g~  116 (220)
                       +.+|++|.++|.
T Consensus        85 ~~~id~vi~~ag~   97 (239)
T PRK08703         85 QGKLDGIVHCAGY   97 (239)
T ss_pred             CCCCCEEEEeccc
Confidence             468999999984

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.05  E-value=0.0095  Score=39.94  Aligned_cols=87  Identities=17%  Similarity=0.312  Sum_probs=59.2

Q ss_pred             EEEEEccchhHHHHHHHHHHC--CCeEEEEeCC-ccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM--GVKVTVISTS-PSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  121 (220)
                      ++.|+|+|.+|......++..  +.+++.+... +++.+.+.+.+|.. .+  .+.+.+.+. ..+|+|+-|+......+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~--~~~~~ll~~-~~~D~V~I~tp~~~h~~   77 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-VY--TDLEELLAD-EDVDAVIIATPPSSHAE   77 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-EE--SSHHHHHHH-TTESEEEEESSGGGHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-ch--hHHHHHHHh-hcCCEEEEecCCcchHH
Confidence            578999999998888666554  4477755544 44566666778877 33  333322221 27999999999987777


Q ss_pred             HHHhccccCCEEEE
Q 027664          122 PLIGLLKSQGKLVL  135 (220)
Q Consensus       122 ~~~~~l~~~G~~v~  135 (220)
                      .+..+++.|-.+..
T Consensus        78 ~~~~~l~~g~~v~~   91 (120)
T PF01408_consen   78 IAKKALEAGKHVLV   91 (120)
T ss_dssp             HHHHHHHTTSEEEE
T ss_pred             HHHHHHHcCCEEEE
Confidence            78888877765443

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.05  E-value=0.0028  Score=55.48  Aligned_cols=77  Identities=22%  Similarity=0.360  Sum_probs=52.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc--------------------chHHHHHHcCCCEEEcCCC-HH-
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS--------------------KKSEAVERLGADSFLVSRD-QD-   98 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~--------------------~~~~~~~~~g~~~~~~~~~-~~-   98 (220)
                      ..+++|+|+|+|+.|+.++..+...|.+|+++...+.                    +.....+.+|++...+..- .+ 
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            3588999999999999999999999999998886542                    0122235667654433211 11 


Q ss_pred             HHHHhcCCccEEEEcCCCc
Q 027664           99 EMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        99 ~~~~~~~~~d~v~d~~g~~  117 (220)
                      .+.....+||.||.++|..
T Consensus       405 ~~~~~~~~~DavilAtGa~  423 (654)
T PRK12769        405 SLESLLEDYDAVFVGVGTY  423 (654)
T ss_pred             CHHHHHhcCCEEEEeCCCC
Confidence            1223334799999999864

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.0037  Score=48.30  Aligned_cols=72  Identities=22%  Similarity=0.312  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHh-------cCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      .+++++|.|+ |.+|..+++.+...|++|++++++.++....   .+... ..|..+.+.+++.       .+.+|++|+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~   79 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI---PGVELLELDVTDDASVQAAVDEVIARAGRIDVLVN   79 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc---CCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            3568999997 9999999988888899999999886543221   23322 2455555444332       236899999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        80 ~ag~   83 (270)
T PRK06179         80 NAGV   83 (270)
T ss_pred             CCCC
Confidence            9985

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.05  E-value=0.0085  Score=47.60  Aligned_cols=99  Identities=17%  Similarity=0.220  Sum_probs=69.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~-~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      +...++.|+|+|..+.+-++.++. ++. +|.+.+++++..+.+++.+......+....+..++...+.|+|+-|+...+
T Consensus       128 ~da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~  207 (330)
T COG2423         128 KDASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE  207 (330)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC
Confidence            556788999999999998887765 677 899999999888777655433221111122223455568999999998764


Q ss_pred             cHHHHHhccccCCEEEEeCCCC
Q 027664          119 PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       119 ~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                       .-...+.+++|-++..+|...
T Consensus       208 -Pil~~~~l~~G~hI~aiGad~  228 (330)
T COG2423         208 -PVLKAEWLKPGTHINAIGADA  228 (330)
T ss_pred             -CeecHhhcCCCcEEEecCCCC
Confidence             223446788899999998643

>PRK08328 hypothetical protein; Provisional

Probab=97.04  E-value=0.0031  Score=47.75  Aligned_cols=34  Identities=35%  Similarity=0.621  Sum_probs=29.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      .+.+|+|+|+|++|..+++.+...|. ++++++..
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999999 77777644

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=97.04  E-value=0.021  Score=46.32  Aligned_cols=76  Identities=13%  Similarity=0.097  Sum_probs=47.7

Q ss_pred             CCCCEEEEEcc-chhHHH--HHHHHHHCCCeEEEEeCCcc--c-------------hHHHHHHcCCCE-E--EcCCCHHH
Q 027664           41 KPGMHVGVVGL-GGLGHV--AVKFAKAMGVKVTVISTSPS--K-------------KSEAVERLGADS-F--LVSRDQDE   99 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~--~~~la~~~g~~vi~~~~~~~--~-------------~~~~~~~~g~~~-~--~~~~~~~~   99 (220)
                      ..++++||.|+ +++|++  +++.+ ..|++++++....+  +             ..+..+..|... .  .|..+.+.
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~  117 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI  117 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence            45688999997 899999  56666 88998888774221  1             233344556432 2  24444433


Q ss_pred             HH----Hh---cCCccEEEEcCCCc
Q 027664          100 MQ----AA---MGTMDGIIDTVSAV  117 (220)
Q Consensus       100 ~~----~~---~~~~d~v~d~~g~~  117 (220)
                      +.    .+   .+++|+++++++.+
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccC
Confidence            22    22   24799999998875

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.04  E-value=0.0051  Score=47.35  Aligned_cols=76  Identities=14%  Similarity=0.217  Sum_probs=49.6

Q ss_pred             CCCCEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCcc---chHHHHHHcCCCE--EEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLGADS--FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g--~~G~~~~~la~~~g~~vi~~~~~~~---~~~~~~~~~g~~~--~~~~~~~~~~~~~-------~~  105 (220)
                      ..|+.++|.|+ +  ++|.++++.+...|++|+.+.+++.   ..+++.+..|...  ..|..+++.++++       .+
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            35788999997 4  7999999888788999998877632   2223333334322  2466665444332       13


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      .+|++++++|.
T Consensus        86 ~iDilVnnag~   96 (260)
T PRK06603         86 SFDFLLHGMAF   96 (260)
T ss_pred             CccEEEEcccc
Confidence            69999998873

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.04  E-value=0.02  Score=39.70  Aligned_cols=96  Identities=16%  Similarity=0.096  Sum_probs=69.3

Q ss_pred             cccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH
Q 027664           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  100 (220)
                      .+|++.......++..+---.|++++|+|- ..+|.-++.++...|++|+.+......                     +
T Consensus         7 ~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~---------------------l   65 (140)
T cd05212           7 FVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQ---------------------L   65 (140)
T ss_pred             ccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcC---------------------H
Confidence            466666666666666653357999999996 789999999999999999988754321                     2


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ++.....|+++-++|.+..++  -+.+++|-.++.+|...
T Consensus        66 ~~~v~~ADIVvsAtg~~~~i~--~~~ikpGa~Vidvg~~~  103 (140)
T cd05212          66 QSKVHDADVVVVGSPKPEKVP--TEWIKPGATVINCSPTK  103 (140)
T ss_pred             HHHHhhCCEEEEecCCCCccC--HHHcCCCCEEEEcCCCc
Confidence            223346789999999875433  45688888888877544

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06436 glycerate dehydrogenase; Provisional

Probab=97.03  E-value=0.011  Score=46.54  Aligned_cols=85  Identities=19%  Similarity=0.294  Sum_probs=61.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~--  119 (220)
                      .|+++.|+|-|.+|..+++.++.+|.+|++.+++...       .+....  ..   .+++.....|+|+.+++....  
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-------~~~~~~--~~---~l~ell~~aDiv~~~lp~t~~T~  188 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-------DGISSI--YM---EPEDIMKKSDFVLISLPLTDETR  188 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-------cCcccc--cC---CHHHHHhhCCEEEECCCCCchhh
Confidence            5789999999999999999999999999999886421       122211  11   234444578999988875321  


Q ss_pred             ---HHHHHhccccCCEEEEeCC
Q 027664          120 ---LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ---~~~~~~~l~~~G~~v~~g~  138 (220)
                         -...++.|+++..++.++-
T Consensus       189 ~li~~~~l~~mk~ga~lIN~sR  210 (303)
T PRK06436        189 GMINSKMLSLFRKGLAIINVAR  210 (303)
T ss_pred             cCcCHHHHhcCCCCeEEEECCC
Confidence               1356788899888888764

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.02  E-value=0.0052  Score=47.06  Aligned_cols=75  Identities=16%  Similarity=0.279  Sum_probs=49.4

Q ss_pred             CCCCEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC---C-EEEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGLG---GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---D-SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~g---~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~---~-~~~~~~~~~~~~~~-------~~~  106 (220)
                      -.+++++|.|++   ++|.++++.+...|++|+.+.+++ +..+..+++..   . ...|..+.+.++++       .+.
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   83 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGK   83 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            357899999964   899999988888899999988763 33333333321   1 12355554433322       246


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        84 iD~lv~nAg~   93 (252)
T PRK06079         84 IDGIVHAIAY   93 (252)
T ss_pred             CCEEEEcccc
Confidence            9999998874

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.02  E-value=0.035  Score=44.10  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=69.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCccchHHHHHHc---CCCEEEcCCCHHHHHHhcCCccEEEEcCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVERL---GADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~-~g~-~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      +..+++.|+|+|..+...++.+.. +.. +|.+..++.++.+.+++.+   +.+....    +..++...+.|+|+-|++
T Consensus       126 ~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~----~~~~~av~~ADIV~taT~  201 (315)
T PRK06823        126 QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTT----LDAAEVAHAANLIVTTTP  201 (315)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEE----CCHHHHhcCCCEEEEecC
Confidence            566788999999999888876554 556 8999999998877665444   3332211    224455568999998887


Q ss_pred             CcccHHHHHhccccCCEEEEeCCCCCC-CCCCch
Q 027664          116 AVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAF  148 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~  148 (220)
                      ....+- -.+.+++|-++..+|..... .+++..
T Consensus       202 s~~P~~-~~~~l~~G~hi~~iGs~~p~~~Eld~~  234 (315)
T PRK06823        202 SREPLL-QAEDIQPGTHITAVGADSPGKQELDAE  234 (315)
T ss_pred             CCCcee-CHHHcCCCcEEEecCCCCcccccCCHH
Confidence            654321 23467888899999875533 455543

>PRK08628 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.0039  Score=47.80  Aligned_cols=75  Identities=20%  Similarity=0.253  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC---EEEcCCCHHHHHHhc-------CC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~~-------~~  106 (220)
                      ..++++||.|+ |++|..+++.+...|++|+++++++++. .+.+.   .+..   ...|..+.+.+.+..       ++
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGR   83 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            35679999997 8999999988888899999998887654 33232   2322   223445544333221       37


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|.++|.
T Consensus        84 id~vi~~ag~   93 (258)
T PRK08628         84 IDGLVNNAGV   93 (258)
T ss_pred             CCEEEECCcc
Confidence            8999999984

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.0045  Score=48.10  Aligned_cols=75  Identities=19%  Similarity=0.266  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCC----C-EEEcCCCHHHHHH---h---cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA----D-SFLVSRDQDEMQA---A---MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~----~-~~~~~~~~~~~~~---~---~~~  106 (220)
                      .++++||.|+ |.+|..++..+...|++|++++++.+......+.   .+.    . ...|..+.+.+++   .   .++
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            3568999997 9999999988888899999999887655444222   221    1 1235555544332   2   236


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|+++.++|.
T Consensus        82 id~vv~~ag~   91 (280)
T PRK06914         82 IDLLVNNAGY   91 (280)
T ss_pred             eeEEEECCcc
Confidence            8999999875

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.0047  Score=47.76  Aligned_cols=72  Identities=22%  Similarity=0.322  Sum_probs=49.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCccEE
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +++|.|+ |++|..+++.+...|.+|++++++.++.+.+.+.+   +.+.   ..|..+.+.+.+.       .+++|++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~l   81 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVI   81 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            6899997 99999999888888999999998877655443332   2221   1244444333322       2479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      |.++|.
T Consensus        82 I~~ag~   87 (270)
T PRK05650         82 VNNAGV   87 (270)
T ss_pred             EECCCC
Confidence            999885

>PLN03075 nicotianamine synthase; Provisional

Probab=97.00  E-value=0.0073  Score=47.16  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHHc----CCCEE--EcCCCHHHHHHhcCCccEEEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERL----GADSF--LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~~----g~~~~--~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .+.++|+-+|+|+.|+.++.+++.+  +.+++.++.+++..+.+.+.+    |...-  +...+........++||+||-
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence            4779999999999999888887654  348999999988766654433    21111  111111111111348999986


Q ss_pred             cCC------C-cccHHHHHhccccCCEEEEeC
Q 027664          113 TVS------A-VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g------~-~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      .+-      . ...++.+.+.|++||.++.=.
T Consensus       202 ~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        202 AALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             ecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            641      1 224678889999999998754

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.00  E-value=0.0052  Score=50.36  Aligned_cols=76  Identities=21%  Similarity=0.296  Sum_probs=53.0

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH------HHHHHc-CCCEE-EcCCCHHHHHHhcC----Cc
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS------EAVERL-GADSF-LVSRDQDEMQAAMG----TM  107 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~------~~~~~~-g~~~~-~~~~~~~~~~~~~~----~~  107 (220)
                      ..+.+|||.|+ |.+|..+++.+...|.+|++++++..+..      ...... +++.+ .|..+.+.+.+...    ++
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~  137 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV  137 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence            46789999997 99999999988888999999998764321      111112 33333 35566666655433    69


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |+||+|++.
T Consensus       138 D~Vi~~aa~  146 (390)
T PLN02657        138 DVVVSCLAS  146 (390)
T ss_pred             cEEEECCcc
Confidence            999999874

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=97.00  E-value=0.017  Score=40.57  Aligned_cols=96  Identities=19%  Similarity=0.310  Sum_probs=54.4

Q ss_pred             EEEEEccchhHHHHHHHHHH-CCCeEEEEeCC--ccchHHHHH---HcCC---CE-------EEcC--------CCHHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKA-MGVKVTVISTS--PSKKSEAVE---RLGA---DS-------FLVS--------RDQDEM  100 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~-~g~~vi~~~~~--~~~~~~~~~---~~g~---~~-------~~~~--------~~~~~~  100 (220)
                      +|.|+|.|.+|..+++.+.. .+.+++++...  .+....+.+   ..|.   +.       .++.        .++..+
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~~~   81 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPANL   81 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChHHC
Confidence            57899999999999887764 46677776653  212222222   1121   11       1111        111222


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .+-.-++|+|+||+|.-.....+...+..|-+-|.++.+.
T Consensus        82 ~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~  121 (149)
T smart00846       82 PWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA  121 (149)
T ss_pred             cccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCC
Confidence            2111289999999987544566667887775666655443

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.00  E-value=0.017  Score=49.18  Aligned_cols=88  Identities=23%  Similarity=0.315  Sum_probs=64.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|+++.|+|.|.+|..+++.++.+|.+|++.++... .+.. ..+|+..+    +   +.++....|+|+-+++...   
T Consensus       139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~-~~~g~~~~----~---l~ell~~aDiV~l~lP~t~~t~  209 (526)
T PRK13581        139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYIS-PERA-AQLGVELV----S---LDELLARADFITLHTPLTPETR  209 (526)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHH-HhcCCEEE----c---HHHHHhhCCEEEEccCCChHhh
Confidence            478999999999999999999999999999987643 2222 34565432    2   4444557899998887532   


Q ss_pred             -cH-HHHHhccccCCEEEEeCC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g~  138 (220)
                       .+ ...+..|+++..++.++-
T Consensus       210 ~li~~~~l~~mk~ga~lIN~aR  231 (526)
T PRK13581        210 GLIGAEELAKMKPGVRIINCAR  231 (526)
T ss_pred             cCcCHHHHhcCCCCeEEEECCC
Confidence             22 456788999998888764

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.99  E-value=0.0046  Score=47.38  Aligned_cols=74  Identities=18%  Similarity=0.183  Sum_probs=50.3

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----C---CC-EEEcCCCHHHHHHh-------cCC
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----G---AD-SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g---~~-~~~~~~~~~~~~~~-------~~~  106 (220)
                      ++++||.|+ |.+|..+++.+...|++|+.++++..+.+...+.+    +   .. ...|..+.+.+.++       .++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            568999997 89999999888888999999998876554443322    2   11 11244454433322       147


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|+++++.|.
T Consensus        82 id~vv~~ag~   91 (259)
T PRK12384         82 VDLLVYNAGI   91 (259)
T ss_pred             CCEEEECCCc
Confidence            8999999874

>PRK09135 pteridine reductase; Provisional

Probab=96.99  E-value=0.0055  Score=46.51  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHHHHc----C--CC-EEEcCCCHHHHHHhc-------C
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERL----G--AD-SFLVSRDQDEMQAAM-------G  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~~~~----g--~~-~~~~~~~~~~~~~~~-------~  105 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++..+ .+.+.+.+    +  .. ...|..+.+.+.++.       +
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4578999997 999999998888889999999886432 33322211    1  11 123555554443322       3


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++|.++|.
T Consensus        85 ~~d~vi~~ag~   95 (249)
T PRK09135         85 RLDALVNNASS   95 (249)
T ss_pred             CCCEEEECCCC
Confidence            68999999984

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.0052  Score=48.05  Aligned_cols=76  Identities=24%  Similarity=0.292  Sum_probs=50.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc---------cchHHHHHHc---CCCE---EEcCCCHHHHHHh-
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP---------SKKSEAVERL---GADS---FLVSRDQDEMQAA-  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~---------~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-  103 (220)
                      ..++++||.|+ +++|..+++.+...|++|++++++.         ++.+.+.+.+   +...   ..|..+.+.+.++ 
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            45789999997 8999999988888899999887654         3333333332   3221   1355554433322 


Q ss_pred             ------cCCccEEEEcCCC
Q 027664          104 ------MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ------~~~~d~v~d~~g~  116 (220)
                            .+.+|++++++|.
T Consensus        84 ~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         84 DAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence                  2479999999875

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.0076  Score=46.74  Aligned_cols=75  Identities=20%  Similarity=0.285  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCEE---EcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSF---LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~-------~~~~  107 (220)
                      ++++++|.|+ |.+|..+++.+...|++|+++.++.++...+...   .+....   .|..+.+.+.++       .+++
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEI   88 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4468999997 9999999988888899999988876554433222   233221   255555444322       2378


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.++|.
T Consensus        89 d~vi~~Ag~   97 (274)
T PRK07775         89 EVLVSGAGD   97 (274)
T ss_pred             CEEEECCCc
Confidence            999999875

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.99  E-value=0.004  Score=47.43  Aligned_cols=34  Identities=38%  Similarity=0.639  Sum_probs=29.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~   76 (220)
                      +.+|+|.|+|++|..+++.+...|. ++++++...
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            4789999999999999999999999 777776553

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.98  E-value=0.009  Score=41.16  Aligned_cols=92  Identities=20%  Similarity=0.303  Sum_probs=53.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHH----------------------HHHcC-CCEEE--c-CC
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA----------------------VERLG-ADSFL--V-SR   95 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~----------------------~~~~g-~~~~~--~-~~   95 (220)
                      ..+|+|.|+|++|..++..+-..|+ ++++++...-....+                      .+++. ...+.  + .-
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~   81 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI   81 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence            4689999999999999998888899 788887543221111                      11111 11111  1 11


Q ss_pred             CHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEE
Q 027664           96 DQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLV  134 (220)
Q Consensus        96 ~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v  134 (220)
                      +++...++.+++|+||+|+.+......+.+.++..+.-+
T Consensus        82 ~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~  120 (135)
T PF00899_consen   82 DEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPF  120 (135)
T ss_dssp             SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EE
T ss_pred             ccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCE
Confidence            123344444589999999998644334444555555433

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.98  E-value=0.0056  Score=46.68  Aligned_cols=74  Identities=22%  Similarity=0.289  Sum_probs=50.6

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHH-------HhcCCcc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQ-------AAMGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~-------~~~~~~d  108 (220)
                      ++++||.|+ |.+|..++..+...|.+|++++++.++.+.+...+   +..   ...|..+.+.+.       +..+++|
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            357999997 99999999888888999999999876655543322   221   113555554332       2234789


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|.+.|.
T Consensus        81 ~vi~~a~~   88 (255)
T TIGR01963        81 ILVNNAGI   88 (255)
T ss_pred             EEEECCCC
Confidence            99988865

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.98  E-value=0.005  Score=46.70  Aligned_cols=74  Identities=20%  Similarity=0.402  Sum_probs=49.2

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCccchHHHHHHc---CCCE---EEcCCCHHHHHHhc-------CCc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~-~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~-------~~~  107 (220)
                      ++++||.|+ |.+|..++..+...|++++++ .++.++...+...+   +...   ..|..+.+.+.+..       +++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKI   84 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            568999997 999999998777789999888 77765544433322   2211   13444544433322       379


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.+.|.
T Consensus        85 d~vi~~ag~   93 (247)
T PRK05565         85 DILVNNAGI   93 (247)
T ss_pred             CEEEECCCc
Confidence            999998875

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=96.97  E-value=0.0073  Score=48.00  Aligned_cols=95  Identities=14%  Similarity=0.184  Sum_probs=58.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCC----CeEEEEeCCccch-HHHHHHcCC--------------CEEEcC--------CCH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMG----VKVTVISTSPSKK-SEAVERLGA--------------DSFLVS--------RDQ   97 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g----~~vi~~~~~~~~~-~~~~~~~g~--------------~~~~~~--------~~~   97 (220)
                      +|-|+|.|.+|..+.+.+...+    .+|+.+....+.. ...+-+++-              ...++.        .++
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p   80 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP   80 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence            3678999999999999877653    5777665533221 111111110              111111        112


Q ss_pred             HHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664           98 DEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus        98 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +.+.+...++|+||+|+|.......+..+++.|++.|.++.+
T Consensus        81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP  122 (325)
T TIGR01532        81 EALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHP  122 (325)
T ss_pred             hhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCC
Confidence            222221238999999999887778888899999888888755

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=96.97  E-value=0.006  Score=48.43  Aligned_cols=74  Identities=23%  Similarity=0.232  Sum_probs=52.2

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCccchHHHHHHcCC-----CE-EEcCCCHHHHHHh-------cCCc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGA-----DS-FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~~~g~-----~~-~~~~~~~~~~~~~-------~~~~  107 (220)
                      +++++|.|+ +++|..+++.+...| .+|+.++++.++.+++.+.++.     .. ..|..+.+.++++       .+++
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   82 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL   82 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            578999997 899999998887889 8999999888766666555431     11 1355554433322       2369


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.++|.
T Consensus        83 D~lI~nAG~   91 (314)
T TIGR01289        83 DALVCNAAV   91 (314)
T ss_pred             CEEEECCCc
Confidence            999998874

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.96  E-value=0.0087  Score=45.75  Aligned_cols=34  Identities=41%  Similarity=0.638  Sum_probs=29.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      ...+|+|+|+|++|..+++.+...|. ++++++..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999999 77777654

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.96  E-value=0.0045  Score=43.09  Aligned_cols=31  Identities=42%  Similarity=0.549  Sum_probs=27.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      +|+|+|+|++|..+++.+...|. ++++++..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            48899999999999999999999 78877755

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.95  E-value=0.014  Score=45.26  Aligned_cols=96  Identities=16%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             cccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH
Q 027664           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  100 (220)
                      ..||+.......+...+---.|++|+|+|- ..+|.-++.++...|++|++......                     .+
T Consensus       131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L  189 (279)
T PRK14178        131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NL  189 (279)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HH
Confidence            467776666666666553347899999996 58999999999999998888765431                     23


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .+....+|+++.++|.+..+..  +.+++|..++.+|...
T Consensus       190 ~~~~~~ADIvI~Avgk~~lv~~--~~vk~GavVIDVgi~~  227 (279)
T PRK14178        190 KAELRQADILVSAAGKAGFITP--DMVKPGATVIDVGINQ  227 (279)
T ss_pred             HHHHhhCCEEEECCCcccccCH--HHcCCCcEEEEeeccc
Confidence            3444578999999997644433  3478999999998653

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.95  E-value=0.0042  Score=46.55  Aligned_cols=99  Identities=20%  Similarity=0.351  Sum_probs=57.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccc-------hHHHHHHcCC-------CE--EEcC----------
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSK-------KSEAVERLGA-------DS--FLVS----------   94 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~-------~~~~~~~~g~-------~~--~~~~----------   94 (220)
                      ...+|+|+|.|++|.+++..+-..|+ ++..++...-.       ...+....|-       ++  -+|+          
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f  108 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF  108 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence            34789999999999999999888899 77776643321       1111111110       00  0111          


Q ss_pred             CCHHHHHHhcC-CccEEEEcCCCcccHHHHHhcc-ccCCEEEEeCCCC
Q 027664           95 RDQDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLL-KSQGKLVLLGAPE  140 (220)
Q Consensus        95 ~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l-~~~G~~v~~g~~~  140 (220)
                      -.++.+.++.. +||+|+||.-+-.+=-.++..+ +.+=.++.++..+
T Consensus       109 ~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag  156 (263)
T COG1179         109 ITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG  156 (263)
T ss_pred             hCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence            11344455444 7999999998764433444434 4444555554433

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.95  E-value=0.018  Score=45.89  Aligned_cols=88  Identities=19%  Similarity=0.264  Sum_probs=61.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHH-HCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP-  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~-~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  119 (220)
                      .|+++.|+|-|.+|..+++.++ .+|.+|+..++....  .....++...    .+   +.++....|+|.-+++-... 
T Consensus       144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~--~~~~~~~~~~----~~---l~ell~~sDvv~lh~plt~~T  214 (323)
T PRK15409        144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK--EAEERFNARY----CD---LDTLLQESDFVCIILPLTDET  214 (323)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch--hhHHhcCcEe----cC---HHHHHHhCCEEEEeCCCChHH
Confidence            5789999999999999999998 899999988766421  2112344321    12   34445578999877764321 


Q ss_pred             ---H-HHHHhccccCCEEEEeCC
Q 027664          120 ---L-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ---~-~~~~~~l~~~G~~v~~g~  138 (220)
                         + ...++.|+++..++.++-
T Consensus       215 ~~li~~~~l~~mk~ga~lIN~aR  237 (323)
T PRK15409        215 HHLFGAEQFAKMKSSAIFINAGR  237 (323)
T ss_pred             hhccCHHHHhcCCCCeEEEECCC
Confidence               1 357789999999888764

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.95  E-value=0.0085  Score=42.59  Aligned_cols=77  Identities=22%  Similarity=0.449  Sum_probs=60.1

Q ss_pred             CCCCEEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCC---HHHHHHh-------cCCccE
Q 027664           41 KPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD---QDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G-~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~-------~~~~d~  109 (220)
                      .+|-..||.| ++++|.+++.-+...|+.++..+.+.++-....+++|-+-++.+.+   +++++..       -+..|.
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~   86 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDA   86 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceee
Confidence            3556678886 4999999998888889999999999998888889999887876655   3334332       136899


Q ss_pred             EEEcCCCc
Q 027664          110 IIDTVSAV  117 (220)
Q Consensus       110 v~d~~g~~  117 (220)
                      .++|.|..
T Consensus        87 ~vncagia   94 (260)
T KOG1199|consen   87 LVNCAGIA   94 (260)
T ss_pred             eeecccee
Confidence            99999974

>PRK06487 glycerate dehydrogenase; Provisional

Probab=96.95  E-value=0.014  Score=46.40  Aligned_cols=83  Identities=18%  Similarity=0.288  Sum_probs=59.4

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc-c-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH-P-  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~-  119 (220)
                      .|+++.|+|.|.+|..+++.++.+|.+|+...+....  .     ..+    ..   .+.++....|+|.-++.-.. + 
T Consensus       147 ~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~--~-----~~~----~~---~l~ell~~sDiv~l~lPlt~~T~  212 (317)
T PRK06487        147 EGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP--A-----RPD----RL---PLDELLPQVDALTLHCPLTEHTR  212 (317)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc--c-----ccc----cc---CHHHHHHhCCEEEECCCCChHHh
Confidence            5679999999999999999999999999988765321  0     111    11   24445556799988776421 1 


Q ss_pred             ---HHHHHhccccCCEEEEeCC
Q 027664          120 ---LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ---~~~~~~~l~~~G~~v~~g~  138 (220)
                         =...++.|+++..++.++-
T Consensus       213 ~li~~~~~~~mk~ga~lIN~aR  234 (317)
T PRK06487        213 HLIGARELALMKPGALLINTAR  234 (317)
T ss_pred             cCcCHHHHhcCCCCeEEEECCC
Confidence               1457788999999888864

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.95  E-value=0.011  Score=45.91  Aligned_cols=96  Identities=15%  Similarity=0.233  Sum_probs=70.2

Q ss_pred             cccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH
Q 027664           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  100 (220)
                      ..||+.......+...+---.|+++.|+|. |.+|.-++.++...|+.|++......                     .+
T Consensus       137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~---------------------~l  195 (284)
T PRK14179        137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR---------------------NL  195 (284)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC---------------------CH
Confidence            467776666666766653357999999996 89999999999999999987722211                     13


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .+.....|+|+-++|.+..+...  .+++|-.++.+|...
T Consensus       196 ~~~~~~ADIVI~avg~~~~v~~~--~ik~GavVIDvgin~  233 (284)
T PRK14179        196 AEVARKADILVVAIGRGHFVTKE--FVKEGAVVIDVGMNR  233 (284)
T ss_pred             HHHHhhCCEEEEecCccccCCHH--HccCCcEEEEeccee
Confidence            33445689999999998765544  388888888887643

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.95  E-value=0.0046  Score=49.91  Aligned_cols=35  Identities=34%  Similarity=0.606  Sum_probs=30.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~   76 (220)
                      .+.+|+|+|+|++|..+++.+...|. ++++++...
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            45789999999999999999999999 787777654

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.94  E-value=0.0078  Score=46.08  Aligned_cols=98  Identities=16%  Similarity=0.169  Sum_probs=61.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH-cCCCEE-EcCCC-HHHHHHhc-CCccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER-LGADSF-LVSRD-QDEMQAAM-GTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~g~~~~-~~~~~-~~~~~~~~-~~~d~v~d~~g~  116 (220)
                      .+.++||.|+ |.+|..+++.+...|.+|+++.++.++....... .++..+ .|..+ .+.+.+.. .++|++|.+.|.
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~   95 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF   95 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence            4578999997 9999999988877899999998887654333221 123222 34444 23343434 489999988774


Q ss_pred             ccc-------------HHHHHhcccc--CCEEEEeCCC
Q 027664          117 VHP-------------LMPLIGLLKS--QGKLVLLGAP  139 (220)
Q Consensus       117 ~~~-------------~~~~~~~l~~--~G~~v~~g~~  139 (220)
                      ...             ...+++.+..  .++++.++..
T Consensus        96 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         96 RRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             CcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            210             1233444433  3678877654

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0071  Score=46.90  Aligned_cols=75  Identities=24%  Similarity=0.345  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-------hHHHH---HHcCCCE---EEcCCCHHHHHHh----
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-------KSEAV---ERLGADS---FLVSRDQDEMQAA----  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-------~~~~~---~~~g~~~---~~~~~~~~~~~~~----  103 (220)
                      .+++++|.|+ |++|..+++.+...|++|++++++.+.       .+...   +..+.+.   ..|..+.+.+.++    
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~   84 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA   84 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence            5678999997 999999998888889999999987542       11121   1233221   2455555444332    


Q ss_pred             ---cCCccEEEEcCCC
Q 027664          104 ---MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ---~~~~d~v~d~~g~  116 (220)
                         .+.+|++|+++|.
T Consensus        85 ~~~~g~id~li~~ag~  100 (273)
T PRK08278         85 VERFGGIDICVNNASA  100 (273)
T ss_pred             HHHhCCCCEEEECCCC
Confidence               1379999999875

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.93  E-value=0.0052  Score=46.43  Aligned_cols=34  Identities=38%  Similarity=0.602  Sum_probs=28.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      .+.+|+|.|+|++|..++..+...|. ++++++..
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35789999999999999999999999 77777544

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08317 hypothetical protein; Provisional

Probab=96.93  E-value=0.0068  Score=45.76  Aligned_cols=100  Identities=27%  Similarity=0.358  Sum_probs=62.9

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHHHc---CCCEEEcCCCHHHHHHhcCCccEEEE
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERL---GADSFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      ..+.++++||.+|+|. |..+..+++..+  .+++.++.++...+.+.+..   +....+...+........+.||+|+-
T Consensus        15 ~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~   93 (241)
T PRK08317         15 LAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRS   93 (241)
T ss_pred             cCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEE
Confidence            3468899999999975 888888888763  58999999887665553331   11111111111111111236888874


Q ss_pred             cC-----CC-cccHHHHHhccccCCEEEEeCC
Q 027664          113 TV-----SA-VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~-----g~-~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ..     .. ...+..+.++|+++|.++....
T Consensus        94 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         94 DRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             echhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence            32     22 2246788899999999988754

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=96.92  E-value=0.0062  Score=45.82  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=52.5

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHhcC--CccEEEEcCCCc
Q 027664           46 VGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMG--TMDGIIDTVSAV  117 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~--~~d~v~d~~g~~  117 (220)
                      |||.|+ |-+|..++..+...|..|+.+.++...........+... ..|..+.+.++++.+  .+|.||.+++..
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~   76 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFS   76 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeeccccccccccccccCceEEEEeeccc
Confidence            789997 999999999999999998888888765544433333322 245566666666554  689999999863

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.92  E-value=0.005  Score=46.56  Aligned_cols=75  Identities=19%  Similarity=0.306  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCEE---EcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSF---LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~-------~~~~  107 (220)
                      +++++||.|+ |.+|..+++.+...|.+|+++.+++++.......   .+.+..   .|..+.+.+.+.       .+.+
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4578999997 9999999988888899999999987654433222   232222   355554433322       2368


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |.++.++|.
T Consensus        84 d~vi~~ag~   92 (246)
T PRK05653         84 DILVNNAGI   92 (246)
T ss_pred             CEEEECCCc
Confidence            999999875

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.0084  Score=45.90  Aligned_cols=75  Identities=17%  Similarity=0.247  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHHHH---cCCC---EEEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVER---LGAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~~~---~g~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++ .+.+.+.   .+..   ...|..+++.+++.       .+.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   86 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA   86 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5689999997 899999999888899999999887542 2332222   2321   12344554433322       246


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|+++.+.|.
T Consensus        87 id~li~~ag~   96 (254)
T PRK06114         87 LTLAVNAAGI   96 (254)
T ss_pred             CCEEEECCCC
Confidence            8999999985

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.90  E-value=0.0093  Score=45.81  Aligned_cols=75  Identities=15%  Similarity=0.298  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCc--cchHHHHHHcCC--C-EEEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSP--SKKSEAVERLGA--D-SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~--~~~~~~~~~~g~--~-~~~~~~~~~~~~~~-------~~~  106 (220)
                      .+++++|.|+   +++|..+++.+...|++|++++++.  +..+++.+.++.  . ...|..+.+.++++       .++
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~   85 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVDG   85 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999985   6999999988888999999988653  233444444442  1 22455555443332       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        86 iD~li~nAG~   95 (256)
T PRK07889         86 LDGVVHSIGF   95 (256)
T ss_pred             CcEEEEcccc
Confidence            9999998874

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.0063  Score=46.18  Aligned_cols=73  Identities=12%  Similarity=0.130  Sum_probs=49.8

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCC---EEEcCCCHHHHHHh----cCCccEEE
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GAD---SFLVSRDQDEMQAA----MGTMDGII  111 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~----~~~~d~v~  111 (220)
                      ++++|.|+ |++|..+++.+...|.+|+++++++++.+...+.+    +..   ...|..+.+.+++.    ...+|+++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv   81 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL   81 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence            47899997 99999999888888999999999887655443332    111   11244444444433    23579999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      .++|.
T Consensus        82 ~~ag~   86 (243)
T PRK07102         82 IAVGT   86 (243)
T ss_pred             ECCcC
Confidence            88774

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.89  E-value=0.0059  Score=46.94  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=48.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-ccchHHHHHH----cCCC---EEEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVER----LGAD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~-~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ +++|..++..+...|++|+.+.++ .++.+...+.    .+..   ...|..+.+.++++       .+
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   86 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFD   86 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            5789999997 899999999888899999887654 3333333222    2321   12355555443322       23


Q ss_pred             CccEEEEcCC
Q 027664          106 TMDGIIDTVS  115 (220)
Q Consensus       106 ~~d~v~d~~g  115 (220)
                      .+|++++++|
T Consensus        87 ~id~lv~nAg   96 (260)
T PRK08416         87 RVDFFISNAI   96 (260)
T ss_pred             CccEEEECcc
Confidence            6899999886

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.89  E-value=0.014  Score=49.27  Aligned_cols=72  Identities=25%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccc----hHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK----KSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      ..+++|+|+|+|.+|+.++.+++..|.+|++++..+..    .....++.|.+...+....     ....+|.|+-+.|-
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-----~~~~~D~Vv~s~Gi   88 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-----LPEDTDLVVTSPGW   88 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-----ccCCCCEEEECCCc
Confidence            45678999999999999999999999999998866531    1122345676544332211     22368999988876


Q ss_pred             c
Q 027664          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      +
T Consensus        89 ~   89 (480)
T PRK01438         89 R   89 (480)
T ss_pred             C
Confidence            4

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.89  E-value=0.0044  Score=50.27  Aligned_cols=34  Identities=35%  Similarity=0.538  Sum_probs=30.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      .+.+|+|+|+|++|..+++.+...|. ++++++..
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999999 88887766

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.89  E-value=0.01  Score=45.45  Aligned_cols=74  Identities=27%  Similarity=0.317  Sum_probs=49.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC---EEEcCCCHHHHHH----h---cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQA----A---MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~----~---~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++++. ...+.+.   .+.+   ...|..+.+.+.+    .   .+++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999997 99999999988888999999988743 2233232   2322   2235555433322    2   2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |+++.++|.
T Consensus        86 d~lv~nAg~   94 (260)
T PRK12823         86 DVLINNVGG   94 (260)
T ss_pred             eEEEECCcc
Confidence            999999873

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.88  E-value=0.0073  Score=45.95  Aligned_cols=75  Identities=20%  Similarity=0.299  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE---EEcCCCHHHHHHhc-------CCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~~-------~~~  107 (220)
                      +++++||.|+ |.+|..+++.+...|.+|+.++++.++..++.+.   .+.+.   ..|..+.+.++++.       +++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999997 9999999998888899999998887655444332   22211   13444444443321       368


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.+.|.
T Consensus        82 d~vi~~ag~   90 (250)
T TIGR03206        82 DVLVNNAGW   90 (250)
T ss_pred             CEEEECCCC
Confidence            999999974

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.88  E-value=0.011  Score=49.83  Aligned_cols=84  Identities=15%  Similarity=0.268  Sum_probs=56.9

Q ss_pred             hhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccE
Q 027664           30 VYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        30 a~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~  109 (220)
                      ...++++.+.-..+.+++|+|+|++|.+++..+...|+++++..++.++.+.+.+.++.. .++..   .... ...+|+
T Consensus       319 ~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~-~~~~~---~~~~-l~~~Di  393 (477)
T PRK09310        319 LFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGK-AFPLE---SLPE-LHRIDI  393 (477)
T ss_pred             HHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccc-eechh---Hhcc-cCCCCE
Confidence            344554433223578899999999999999988899999998888877766665555432 12211   1111 247899


Q ss_pred             EEEcCCCcc
Q 027664          110 IIDTVSAVH  118 (220)
Q Consensus       110 v~d~~g~~~  118 (220)
                      +++|++...
T Consensus       394 VInatP~g~  402 (477)
T PRK09310        394 IINCLPPSV  402 (477)
T ss_pred             EEEcCCCCC
Confidence            999997653

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=96.88  E-value=0.0076  Score=47.77  Aligned_cols=75  Identities=21%  Similarity=0.305  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHH--Hc-C----CCEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE--RL-G----ADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~--~~-g----~~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .+.+|||.|+ |.+|..++..+...|.+|++++++.+.......  .+ +    ...+ .|..+.+.+.++..++|+||.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            4678999997 999999999888889999988877654222211  11 1    1111 133344455566668999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      +++.
T Consensus        83 ~A~~   86 (322)
T PLN02662         83 TASP   86 (322)
T ss_pred             eCCc
Confidence            8863

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0045  Score=47.31  Aligned_cols=72  Identities=24%  Similarity=0.291  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC-EEEcCCCHHHHHHh-------cCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++  .. ...+.. ...|..+.+.+++.       .+.+|++|.
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~--~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   81 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE--TV-DGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVN   81 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh--hh-cCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5789999997 999999999888889999999887643  11 111121 12355554433332       246899999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        82 ~ag~   85 (252)
T PRK07856         82 NAGG   85 (252)
T ss_pred             CCCC
Confidence            9874

>PRK06398 aldose dehydrogenase; Validated

Probab=96.88  E-value=0.0058  Score=46.98  Aligned_cols=69  Identities=16%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC-EEEcCCCHHHHHHh-------cCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      .|+++||.|+ |++|..++..+...|++|++++++..+..      ... ...|..+++.++++       .+.+|++++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~------~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~   78 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYN------DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN   78 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccC------ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4689999997 89999999998889999999988764321      121 22355555443332       236999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      +.|.
T Consensus        79 ~Ag~   82 (258)
T PRK06398         79 NAGI   82 (258)
T ss_pred             CCCC
Confidence            9874

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=96.88  E-value=0.0032  Score=48.96  Aligned_cols=72  Identities=19%  Similarity=0.210  Sum_probs=49.1

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcC-------CCE-----EEcCCCHHHHHHhcC--CccE
Q 027664           46 VGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG-------ADS-----FLVSRDQDEMQAAMG--TMDG  109 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g-------~~~-----~~~~~~~~~~~~~~~--~~d~  109 (220)
                      |||.|+ |.+|...++.+...+. ++++++.++.+...+.+++.       ...     +-|..+.+.+.....  ++|+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi   80 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI   80 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence            789987 9999999987777787 89999999998888877772       111     124455667777766  9999


Q ss_pred             EEEcCCCc
Q 027664          110 IIDTVSAV  117 (220)
Q Consensus       110 v~d~~g~~  117 (220)
                      ||.++.-.
T Consensus        81 VfHaAA~K   88 (293)
T PF02719_consen   81 VFHAAALK   88 (293)
T ss_dssp             EEE-----
T ss_pred             EEEChhcC
Confidence            99998753

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.87  E-value=0.005  Score=41.59  Aligned_cols=90  Identities=17%  Similarity=0.169  Sum_probs=53.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCcc-chHHHHHHcC----C-CEEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPS-KKSEAVERLG----A-DSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~-g~~vi~~~~~~~-~~~~~~~~~g----~-~~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      +|.|+|+ |.+|..+++++..+ ..+++.+..+.. ....+...++    . +..+...+.+   .+ .++|+||.|++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~Dvvf~a~~~   76 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPE---EL-SDVDVVFLALPH   76 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGH---HH-TTESEEEE-SCH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchh---Hh-hcCCEEEecCch
Confidence            5889996 99999999877654 556655554443 3223322222    2 2222221222   22 689999999998


Q ss_pred             cccHHHHHhccccCCEEEEeCC
Q 027664          117 VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       117 ~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ....+..-..+.+|-+++..+.
T Consensus        77 ~~~~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   77 GASKELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             HHHHHHHHHHHHTTSEEEESSS
T ss_pred             hHHHHHHHHHhhCCcEEEeCCH
Confidence            7444444555677777877754

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0089  Score=45.36  Aligned_cols=72  Identities=17%  Similarity=0.061  Sum_probs=49.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-CC-EEEcCCCHHHHHHhcC----CccEEEEcCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-AD-SFLVSRDQDEMQAAMG----TMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~~----~~d~v~d~~g  115 (220)
                      .+++|.|+ |++|..++..+...|++|+++++++++.+++.+... .. ...|..+.+.+++...    ..|.++.++|
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag   80 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG   80 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence            56899997 999999988887889999999998776665543322 21 2245566655554432    4677766665

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.87  E-value=0.0072  Score=46.57  Aligned_cols=76  Identities=12%  Similarity=0.206  Sum_probs=49.0

Q ss_pred             CCCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCcc---chHHHHHHcCC--CEEEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLGA--DSFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~~---~~~~~~~~~g~--~~~~~~~~~~~~~~~-------~~  105 (220)
                      -.++++||.|+   +++|.++++.+...|++|+++.+.+.   +.+++.+..+.  ....|..+.+.++++       .+
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            35788999994   58999999888889999998765431   22233223332  222455555444332       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus        84 ~iD~lVnnAG~   94 (261)
T PRK08690         84 GLDGLVHSIGF   94 (261)
T ss_pred             CCcEEEECCcc
Confidence            79999999875

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.86  E-value=0.01  Score=45.85  Aligned_cols=75  Identities=13%  Similarity=0.220  Sum_probs=48.4

Q ss_pred             CCCEEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCcc---chHHHHHHcCC--CEEEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGLG---GLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLGA--DSFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~g---~~G~~~~~la~~~g~~vi~~~~~~~---~~~~~~~~~g~--~~~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|++   ++|.++++.+...|++|+.+.+++.   ..+++....+.  ....|-.+.+.++++.       +.
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   84 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK   84 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence            57899999973   7999999888888999998877631   12222222231  1224555555443321       36


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|-
T Consensus        85 iD~linnAg~   94 (262)
T PRK07984         85 FDGFVHSIGF   94 (262)
T ss_pred             CCEEEECCcc
Confidence            8999999973

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0079  Score=47.56  Aligned_cols=74  Identities=22%  Similarity=0.235  Sum_probs=49.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc----------cchHHHHH---HcCCC---EEEcCCCHHHHHHh-
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP----------SKKSEAVE---RLGAD---SFLVSRDQDEMQAA-  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~----------~~~~~~~~---~~g~~---~~~~~~~~~~~~~~-  103 (220)
                      .+++++|.|+ +++|..+++.+...|++|++++++.          ++.+.+.+   ..+..   ...|..+.+.++++ 
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   86 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV   86 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            5789999997 8999999998888999999988763          23333322   23322   12355554443322 


Q ss_pred             ------cCCccEEEEcC-C
Q 027664          104 ------MGTMDGIIDTV-S  115 (220)
Q Consensus       104 ------~~~~d~v~d~~-g  115 (220)
                            .+.+|++++++ |
T Consensus        87 ~~~~~~~g~iDilVnnA~g  105 (305)
T PRK08303         87 ERIDREQGRLDILVNDIWG  105 (305)
T ss_pred             HHHHHHcCCccEEEECCcc
Confidence                  24699999988 5

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=96.85  E-value=0.0073  Score=46.84  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC---CC------EEEcCCCHHHHH--------H
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---AD------SFLVSRDQDEMQ--------A  102 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g---~~------~~~~~~~~~~~~--------~  102 (220)
                      -.|+.+||.|+ .++|.+++..+...|++|+++.+++++.++.++.+.   ..      ...|..+++..+        +
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~   85 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK   85 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence            46788999997 899999999999999999999999987766655432   21      223444333222        2


Q ss_pred             hcCCccEEEEcCCCc
Q 027664          103 AMGTMDGIIDTVSAV  117 (220)
Q Consensus       103 ~~~~~d~v~d~~g~~  117 (220)
                      +.+++|+.++..|..
T Consensus        86 ~~GkidiLvnnag~~  100 (270)
T KOG0725|consen   86 FFGKIDILVNNAGAL  100 (270)
T ss_pred             hCCCCCEEEEcCCcC
Confidence            234799999988763

>PRK00811 spermidine synthase; Provisional

Probab=96.85  E-value=0.017  Score=45.20  Aligned_cols=95  Identities=17%  Similarity=0.133  Sum_probs=59.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCC--------C--EEEcCCCHHHHHHhcCCccE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA--------D--SFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~--------~--~~~~~~~~~~~~~~~~~~d~  109 (220)
                      ...++||++|+|. |..+..+++..+. +|++++.+++-.+.+.+.+..        .  .++..+....++...+.||+
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence            4568899999864 7777777887666 899999888765555433321        0  11111112333332347999


Q ss_pred             EEEcCCCc----------ccHHHHHhccccCCEEEEe
Q 027664          110 IIDTVSAV----------HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       110 v~d~~g~~----------~~~~~~~~~l~~~G~~v~~  136 (220)
                      |+--...+          +.++.+.+.|+++|.++.-
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            97433211          2246778999999999874

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.0083  Score=44.93  Aligned_cols=72  Identities=22%  Similarity=0.291  Sum_probs=51.1

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC-EEEcCCCHHHHHHh----cC-CccEEEEcCCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAA----MG-TMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~----~~-~~d~v~d~~g~  116 (220)
                      ++++|.|+ |.+|..+++.+...|++|+.++++.+..+++ +..+.. ...|..+.+.++++    .+ ++|+++.+.|.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAAL-QALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHH-HhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            46889997 9999999987777899999999887665555 334443 23455555544443    22 69999998875

>PLN02366 spermidine synthase

Probab=96.85  E-value=0.014  Score=46.07  Aligned_cols=96  Identities=19%  Similarity=0.178  Sum_probs=57.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCC-C--------EEEcCCCHHHHHHh-cCCccE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA-D--------SFLVSRDQDEMQAA-MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~-~--------~~~~~~~~~~~~~~-~~~~d~  109 (220)
                      ...++|||+|+|. |..+..++++.+. +|++++.+++-.+.+.+.++. .        .++..+..+.+++. .+.||+
T Consensus        90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            5678999999875 6666778888766 788888776533333222321 0        01111112234443 247999


Q ss_pred             EEEcCCCc----------ccHHHHHhccccCCEEEEeC
Q 027664          110 IIDTVSAV----------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       110 v~d~~g~~----------~~~~~~~~~l~~~G~~v~~g  137 (220)
                      ||--...+          +.++.+.++|+++|.++.-+
T Consensus       169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            87433221          23677889999999997643

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.85  E-value=0.0065  Score=46.89  Aligned_cols=34  Identities=32%  Similarity=0.603  Sum_probs=29.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      .+.+|+|+|+|++|..++..+-..|. ++++++..
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            56789999999999999999999997 88888755

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.84  E-value=0.0084  Score=46.40  Aligned_cols=88  Identities=14%  Similarity=0.219  Sum_probs=55.5

Q ss_pred             EEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  123 (220)
                      +|.|+|+|.+|...++..... +.++..+...+...+...+.++.. +.-+.+.+.   +...+|+|++|++.....+.+
T Consensus         3 rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~-~~~~~d~~~---l~~~~DvVve~t~~~~~~e~~   78 (265)
T PRK13303          3 KVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEA-VRVVSSVDA---LPQRPDLVVECAGHAALKEHV   78 (265)
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccC-CeeeCCHHH---hccCCCEEEECCCHHHHHHHH
Confidence            688999999999998776654 567666664433333332333221 111222232   334799999999987666777


Q ss_pred             HhccccCCEEEEe
Q 027664          124 IGLLKSQGKLVLL  136 (220)
Q Consensus       124 ~~~l~~~G~~v~~  136 (220)
                      ..++..|-.++..
T Consensus        79 ~~aL~aGk~Vvi~   91 (265)
T PRK13303         79 VPILKAGIDCAVI   91 (265)
T ss_pred             HHHHHcCCCEEEe
Confidence            8888877666654

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.84  E-value=0.032  Score=42.44  Aligned_cols=99  Identities=15%  Similarity=0.172  Sum_probs=60.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc-cchHHHH---HHcCCC---EEEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAV---ERLGAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~-~~~~~~~---~~~g~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      .+.++||.|+ |.+|..+++-+...|++++...++. ++.....   +..+..   ...|..+.+.+.+.       .++
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            3678999997 8999999988888999987766543 2222211   222322   11344444433222       247


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          107 MDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +|++|.++|...                         ..+.+...+++.|+++.++...
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~  143 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVA  143 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchh
Confidence            899999998410                         0123344556678999887654

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.83  E-value=0.0075  Score=48.19  Aligned_cols=91  Identities=20%  Similarity=0.229  Sum_probs=62.5

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-------CCC---EEEcCCCHHHHHHhcCCccEEEEc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-------GAD---SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-------g~~---~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      .+|.|+|+|.+|...+..+...|.+|++..+++++.+.+.+..       |..   .+....   ...+.....|+||-|
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~---~~~e~~~~aD~Vi~~   81 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTA---DPEEALAGADFAVVA   81 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeC---CHHHHHcCCCEEEEE
Confidence            4689999999999999988888999999999877665554321       110   011111   122333578999999


Q ss_pred             CCCcccHHHHHhccccCCEEEEeCC
Q 027664          114 VSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 ~g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      +... .....++.++++-.++.+..
T Consensus        82 v~~~-~~~~v~~~l~~~~~vi~~~~  105 (328)
T PRK14618         82 VPSK-ALRETLAGLPRALGYVSCAK  105 (328)
T ss_pred             CchH-HHHHHHHhcCcCCEEEEEee
Confidence            9987 46777788877766665543

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=96.83  E-value=0.017  Score=46.72  Aligned_cols=93  Identities=13%  Similarity=0.328  Sum_probs=64.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHC--CCeEEEEe--CCccchHHHHHHcCCCEEEcCCCH--HHHH---------------
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAM--GVKVTVIS--TSPSKKSEAVERLGADSFLVSRDQ--DEMQ---------------  101 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~--g~~vi~~~--~~~~~~~~~~~~~g~~~~~~~~~~--~~~~---------------  101 (220)
                      ++|.|+|+ |++|..++...+..  ..+|++++  .+.++..+.+++++...++-.++.  ..++               
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~   81 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE   81 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence            46899996 99999999988765  45777775  444466777778888766543331  1121               


Q ss_pred             ---HhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664          102 ---AAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       102 ---~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                         ++..  .+|+|+.++++...+...+.+++.|-++.+.
T Consensus        82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA  121 (385)
T PRK05447         82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA  121 (385)
T ss_pred             HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence               1111  5899999998866677788888777776653

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.82  E-value=0.028  Score=45.02  Aligned_cols=87  Identities=23%  Similarity=0.274  Sum_probs=57.5

Q ss_pred             CCCEEEEEccchhHHHHHHHH-HHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFA-KAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la-~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      .|.+|.|+|.|.+|..+++.+ +.+|.+|++.+++....  . .. ...    ..  ..+.+.....|+|+-+++.....
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~-~~~----~~--~~l~ell~~aDvIvl~lP~t~~t  214 (332)
T PRK08605        145 KDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--A-AT-YVD----YK--DTIEEAVEGADIVTLHMPATKYN  214 (332)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--H-Hh-hcc----cc--CCHHHHHHhCCEEEEeCCCCcch
Confidence            478899999999999999887 67899999888765422  1 11 111    11  12334445789999988764222


Q ss_pred             -----HHHHhccccCCEEEEeCC
Q 027664          121 -----MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 -----~~~~~~l~~~G~~v~~g~  138 (220)
                           ...+..++++..++.++-
T Consensus       215 ~~li~~~~l~~mk~gailIN~sR  237 (332)
T PRK08605        215 HYLFNADLFKHFKKGAVFVNCAR  237 (332)
T ss_pred             hhhcCHHHHhcCCCCcEEEECCC
Confidence                 234667777777777643

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.81  E-value=0.022  Score=46.17  Aligned_cols=59  Identities=25%  Similarity=0.314  Sum_probs=44.5

Q ss_pred             cccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           18 DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        18 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ++|.+..+.+.+- .++...+.--+|.+|.|.|.|.+|..+++.+...|++|++++.+..
T Consensus       183 ~~aTg~Gv~~~~~-~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         183 SEATGYGVFYAIR-EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             CcccceehHHHHH-HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            4454455444443 4444444214899999999999999999999888999999999887

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=96.81  E-value=0.0058  Score=48.48  Aligned_cols=71  Identities=21%  Similarity=0.287  Sum_probs=52.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      +++|.|+ |.+|..+++.+...|.+|+++++++++.... ...+...+ .|..+.+.+.+...++|+||++++.
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~   74 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL-EGLDVEIVEGDLRDPASLRKAVAGCRALFHVAAD   74 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc-ccCCceEEEeeCCCHHHHHHHHhCCCEEEEecee
Confidence            5899997 9999999998888899999999886643322 22344332 3555666677766789999998864

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK06046 alanine dehydrogenase; Validated

Probab=96.81  E-value=0.015  Score=46.50  Aligned_cols=102  Identities=23%  Similarity=0.326  Sum_probs=66.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCccchHHHHHHc----CCCEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERL----GADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~-~~g~-~vi~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      +...++.|+|+|..|...+..+. ..++ ++.+.+++.++.+++++.+    +..... ..+   +++..+ .|+|+.|+
T Consensus       127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~-~~~---~~~~l~-aDiVv~aT  201 (326)
T PRK06046        127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTV-AED---IEEACD-CDILVTTT  201 (326)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEE-eCC---HHHHhh-CCEEEEec
Confidence            45678999999999988887655 4677 6777888877777776655    322111 222   233334 89999999


Q ss_pred             CCcccHHHHHhccccCCEEEEeCCCCCC-CCCCch
Q 027664          115 SAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAF  148 (220)
Q Consensus       115 g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~  148 (220)
                      +....+ ...+.+++|-++..+|..... .+++..
T Consensus       202 ps~~P~-~~~~~l~~g~hV~~iGs~~p~~~El~~~  235 (326)
T PRK06046        202 PSRKPV-VKAEWIKEGTHINAIGADAPGKQELDPE  235 (326)
T ss_pred             CCCCcE-ecHHHcCCCCEEEecCCCCCccccCCHH
Confidence            875422 223456888888888875432 444443

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.80  E-value=0.002  Score=53.72  Aligned_cols=93  Identities=16%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             hcCCCCCCEEE----EEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC-EEEcCCCHHHHHHhcCCccEE
Q 027664           37 YGLDKPGMHVG----VVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        37 ~~~~~~~~~vl----I~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      ..++++|+++|    |+|+ |++|.+++|+++..|++|+.+.....+.... +..+.. .++|.+......++..-    
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~l~~~----  102 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAG-WGDRFGALVFDATGITDPADLKAL----  102 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccC-cCCcccEEEEECCCCCCHHHHHHH----
Confidence            34567888887    7775 9999999999999999999887765432211 222333 34443332111111000    


Q ss_pred             EEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          111 IDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                            ...++..++.+.++|+++.++...
T Consensus       103 ------~~~~~~~l~~l~~~griv~i~s~~  126 (450)
T PRK08261        103 ------YEFFHPVLRSLAPCGRVVVLGRPP  126 (450)
T ss_pred             ------HHHHHHHHHhccCCCEEEEEcccc
Confidence                  013456677888899999887654

>TIGR02415 23BDH acetoin reductases

Probab=96.79  E-value=0.008  Score=45.87  Aligned_cols=73  Identities=21%  Similarity=0.276  Sum_probs=50.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCCccE
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      ++++|.|+ |.+|..+++.+...|++|+.+.+++++.+.+.+.+   +..   ...|..+++.+.+.       .+.+|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            36899997 99999999888889999999998866554443332   321   12355555444332       236899


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      ++.+.|.
T Consensus        81 vi~~ag~   87 (254)
T TIGR02415        81 MVNNAGV   87 (254)
T ss_pred             EEECCCc
Confidence            9999875

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.0094  Score=44.88  Aligned_cols=69  Identities=20%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-CEEEcCCCHHHHHH----hc--CCccEEEEc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQA----AM--GTMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~----~~--~~~d~v~d~  113 (220)
                      .+++++|.|+ |.+|..+++.+...|.+|+++.++.+..      ... -...|..+.+.+++    +.  .++|++|.+
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~   75 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD------FPGELFACDLADIEQTAATLAQINEIHPVDAIVNN   75 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc------cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEEC
Confidence            3578999997 9999999998888899999999886531      111 12235555443332    21  268999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      .|.
T Consensus        76 ag~   78 (234)
T PRK07577         76 VGI   78 (234)
T ss_pred             CCC
Confidence            875

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.79  E-value=0.011  Score=44.59  Aligned_cols=74  Identities=16%  Similarity=0.268  Sum_probs=58.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH-HcCCCEE-EcCCCHHHHHHhc-CCccEEEEcCCCcc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE-RLGADSF-LVSRDQDEMQAAM-GTMDGIIDTVSAVH  118 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~-~~~d~v~d~~g~~~  118 (220)
                      .++|+|+|.+|..+++.+...|.+|++++.++++..++.. .+....+ .+..+++.++++. ..+|+++=++|++.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~   78 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE   78 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence            5889999999999999999999999999999988777433 3444333 3455566777763 48999999999864

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.79  E-value=0.0064  Score=49.43  Aligned_cols=75  Identities=9%  Similarity=0.104  Sum_probs=50.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      ..+++|||.|+ |-+|..++..+...|.+|+++++........ ..++...+ .|..+.+.+..+..++|+||++++.
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~   95 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSE-DMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAAD   95 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccccc-ccccceEEECCCCCHHHHHHHHhCCCEEEEcccc
Confidence            46789999997 9999999999998999999998754321111 01122222 2444445555555689999999853

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.78  E-value=0.02  Score=45.60  Aligned_cols=87  Identities=24%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc-
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP-  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  119 (220)
                      -.+++|.|+|.|.+|.+.++-++..|.+|++..++.++....++..|... .   +   ..+.....|+|+-++..... 
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~-~---s---~~eaa~~ADVVvLaVPd~~~~   87 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEV-L---T---VAEAAKWADVIMILLPDEVQA   87 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCee-C---C---HHHHHhcCCEEEEcCCHHHHH
Confidence            35788999999999999999999999999887776555544445566532 1   1   33444578999999986532 


Q ss_pred             --H-HHHHhccccCCEEE
Q 027664          120 --L-MPLIGLLKSQGKLV  134 (220)
Q Consensus       120 --~-~~~~~~l~~~G~~v  134 (220)
                        + ......++++..++
T Consensus        88 ~V~~~~I~~~Lk~g~iL~  105 (330)
T PRK05479         88 EVYEEEIEPNLKEGAALA  105 (330)
T ss_pred             HHHHHHHHhcCCCCCEEE
Confidence              1 22334555555553

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.78  E-value=0.0091  Score=45.45  Aligned_cols=77  Identities=18%  Similarity=0.282  Sum_probs=50.7

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC--EE--EcCC--CHHHHH-------H
Q 027664           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD--SF--LVSR--DQDEMQ-------A  102 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~--~~--~~~~--~~~~~~-------~  102 (220)
                      ..++++++|.|+ |.+|..+++.+...|++|++++++.++...+.+.+   +..  .+  .|..  +.+.++       +
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            457889999997 99999999888778999999999876544443332   221  11  2322  222222       2


Q ss_pred             hcCCccEEEEcCCC
Q 027664          103 AMGTMDGIIDTVSA  116 (220)
Q Consensus       103 ~~~~~d~v~d~~g~  116 (220)
                      ..+.+|.+|.++|.
T Consensus        89 ~~~~id~vi~~Ag~  102 (247)
T PRK08945         89 QFGRLDGVLHNAGL  102 (247)
T ss_pred             HhCCCCEEEECCcc
Confidence            22478999998864

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.77  E-value=0.0065  Score=53.37  Aligned_cols=75  Identities=20%  Similarity=0.278  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCC----EEEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GAD----SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~----~~~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+    +..    ...|..+.+.+++.       .+
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g  492 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYG  492 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4688999997 99999999888888999999998876654443332    221    12355555444332       23


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus       493 ~iDilV~nAG~  503 (676)
T TIGR02632       493 GVDIVVNNAGI  503 (676)
T ss_pred             CCcEEEECCCC
Confidence            79999999985

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.77  E-value=0.012  Score=49.14  Aligned_cols=72  Identities=26%  Similarity=0.344  Sum_probs=49.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc-chHHH---HHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEA---VERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      .+++++|+|+|.+|+.++..+...|++|++++.... ...+.   .+.+|.+... ....+   +..+++|+|+.+.|..
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~~~~~d~vv~~~g~~   79 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVL-GEYPE---EFLEGVDLVVVSPGVP   79 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEe-CCcch---hHhhcCCEEEECCCCC
Confidence            468899999988999999999999999999988752 22211   1334554322 22222   2335799999998853

>PLN02686 cinnamoyl-CoA reductase

Probab=96.76  E-value=0.0096  Score=48.37  Aligned_cols=74  Identities=18%  Similarity=0.192  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-----------CCCEE-EcCCCHHHHHHhcCCc
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----------GADSF-LVSRDQDEMQAAMGTM  107 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-----------g~~~~-~~~~~~~~~~~~~~~~  107 (220)
                      ..+++|||.|+ |.+|..+++.+...|.+|+++.++.++...+ +.+           +...+ .|..+.+.+.+...++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~~  129 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDGC  129 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHHHhc
Confidence            56789999997 9999999998888899998887775544333 222           12222 2455555566666678


Q ss_pred             cEEEEcCC
Q 027664          108 DGIIDTVS  115 (220)
Q Consensus       108 d~v~d~~g  115 (220)
                      |.||.+.+
T Consensus       130 d~V~hlA~  137 (367)
T PLN02686        130 AGVFHTSA  137 (367)
T ss_pred             cEEEecCe
Confidence            88886654

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=96.76  E-value=0.0064  Score=46.99  Aligned_cols=105  Identities=17%  Similarity=0.066  Sum_probs=65.3

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-CEE-EcCCCHHHHHHhc-CCcc
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSF-LVSRDQDEMQAAM-GTMD  108 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-~~~-~~~~~~~~~~~~~-~~~d  108 (220)
                      .++... .+.++.+||=+|+|. |..+..+++..+++|+.++.++.....+.+.... +.+ +...+.... .+. +.||
T Consensus        43 ~~l~~l-~l~~~~~VLDiGcG~-G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-~~~~~~FD  119 (263)
T PTZ00098         43 KILSDI-ELNENSKVLDIGSGL-GGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-DFPENTFD  119 (263)
T ss_pred             HHHHhC-CCCCCCEEEEEcCCC-ChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-CCCCCCeE
Confidence            334444 468999999999873 6666777777788999999998766666444332 111 111111100 111 3699


Q ss_pred             EEEE--cC---C--C-cccHHHHHhccccCCEEEEeCCC
Q 027664          109 GIID--TV---S--A-VHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       109 ~v~d--~~---g--~-~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +|+-  +.   +  . ...+..+.+.|++||+++.....
T Consensus       120 ~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        120 MIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             EEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9885  22   1  1 12467788999999999987553

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.75  E-value=0.013  Score=44.42  Aligned_cols=75  Identities=24%  Similarity=0.283  Sum_probs=48.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-ccchHHHHH---HcCCCEE---EcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVE---RLGADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~-~~~~~~~~~---~~g~~~~---~~~~~~~~~~~~-------~~~  106 (220)
                      .+++++|.|+ |++|..+++.+...|++|++.... ..+.....+   ..+....   .|..+.+.+.+.       .++
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4678999997 999999999888889988875543 333322222   2343322   355554433322       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        82 id~li~~ag~   91 (246)
T PRK12938         82 IDVLVNNAGI   91 (246)
T ss_pred             CCEEEECCCC
Confidence            9999999985

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.75  E-value=0.011  Score=42.14  Aligned_cols=88  Identities=23%  Similarity=0.344  Sum_probs=56.9

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHH-
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP-  122 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~-  122 (220)
                      .+|-++|.|.+|...++-+...|.+|++.++++++.+.+. +.|+..+  . +   ..+.....|+||-|+.+...... 
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-~~g~~~~--~-s---~~e~~~~~dvvi~~v~~~~~v~~v   74 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-EAGAEVA--D-S---PAEAAEQADVVILCVPDDDAVEAV   74 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-HTTEEEE--S-S---HHHHHHHBSEEEE-SSSHHHHHHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-Hhhhhhh--h-h---hhhHhhcccceEeecccchhhhhh
Confidence            3678899999999999988888999999999988877774 3454322  1 2   22223345999999987544433 


Q ss_pred             -----HHhccccCCEEEEeCC
Q 027664          123 -----LIGLLKSQGKLVLLGA  138 (220)
Q Consensus       123 -----~~~~l~~~G~~v~~g~  138 (220)
                           +...+.++..++.++.
T Consensus        75 ~~~~~i~~~l~~g~iiid~sT   95 (163)
T PF03446_consen   75 LFGENILAGLRPGKIIIDMST   95 (163)
T ss_dssp             HHCTTHGGGS-TTEEEEE-SS
T ss_pred             hhhhHHhhccccceEEEecCC
Confidence                 3455566667776654

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.75  E-value=0.012  Score=45.61  Aligned_cols=89  Identities=16%  Similarity=0.256  Sum_probs=58.4

Q ss_pred             CCEEEEEccchhHHHHHHHHHH--CCCeEEEE-eCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKA--MGVKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~--~g~~vi~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      .-+|-|+|.|.+|...++.+..  .+.++..+ ++++++.+.+.+.+|....+  .+.+   ++...+|+|++|++....
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~--~~~e---ell~~~D~Vvi~tp~~~h   80 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPV--VPLD---QLATHADIVVEAAPASVL   80 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCccc--CCHH---HHhcCCCEEEECCCcHHH
Confidence            3578999999999988876654  46777654 44555555555566643222  2223   333468999999998765


Q ss_pred             HHHHHhccccCCEEEEe
Q 027664          120 LMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~  136 (220)
                      .+....+++.|..++..
T Consensus        81 ~e~~~~aL~aGk~Vi~~   97 (271)
T PRK13302         81 RAIVEPVLAAGKKAIVL   97 (271)
T ss_pred             HHHHHHHHHcCCcEEEe
Confidence            66667777777656543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=96.75  E-value=0.018  Score=42.92  Aligned_cols=102  Identities=22%  Similarity=0.207  Sum_probs=67.4

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHH---HcCCCE-E--EcC-CCHHHHHH-hcCCc
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVE---RLGADS-F--LVS-RDQDEMQA-AMGTM  107 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~---~~g~~~-~--~~~-~~~~~~~~-~~~~~  107 (220)
                      .+....+++|=+|.+ +|..++.+|..+.  .+++.+..++++.+.+++   +.|.+. +  +.. +.-+.+++ ..+.|
T Consensus        55 ~~~~~~k~iLEiGT~-~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~f  133 (219)
T COG4122          55 ARLSGPKRILEIGTA-IGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSF  133 (219)
T ss_pred             HHhcCCceEEEeecc-cCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCc
Confidence            335677889989864 4777778887765  388888888887655544   345533 2  221 22344444 23589


Q ss_pred             cEEE-EcCCC--cccHHHHHhccccCCEEEEeCCCC
Q 027664          108 DGII-DTVSA--VHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       108 d~v~-d~~g~--~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      |+|| |+.-.  +..++.+++.+++||.++.-....
T Consensus       134 DliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~  169 (219)
T COG4122         134 DLVFIDADKADYPEYLERALPLLRPGGLIVADNVLF  169 (219)
T ss_pred             cEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence            9997 55433  345889999999999998765543

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=96.74  E-value=0.041  Score=37.51  Aligned_cols=91  Identities=14%  Similarity=0.347  Sum_probs=58.7

Q ss_pred             EEEEcc-chhHHHHHHHHHHCC--CeEEEEeCC--ccchHHHHHHcCCCEEEcCCCH--HHHH-----------------
Q 027664           46 VGVVGL-GGLGHVAVKFAKAMG--VKVTVISTS--PSKKSEAVERLGADSFLVSRDQ--DEMQ-----------------  101 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~la~~~g--~~vi~~~~~--~~~~~~~~~~~g~~~~~~~~~~--~~~~-----------------  101 (220)
                      |.|.|+ |++|..+.++.+.+.  .+|+...-.  -+++.+..+++....++-.++.  +.++                 
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~   80 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE   80 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence            578898 999999999999876  477765543  3345555677887776644432  1121                 


Q ss_pred             ---Hhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664          102 ---AAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       102 ---~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                         ++.  ..+|+++.++.+-..+.-.+..++.+-++.+.
T Consensus        81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaLA  120 (129)
T PF02670_consen   81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIALA  120 (129)
T ss_dssp             HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE-
T ss_pred             HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEEe
Confidence               221  27999999987766788888888877666553

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PLN02650 dihydroflavonol-4-reductase

Probab=96.74  E-value=0.014  Score=47.07  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC----CEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA----DSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~----~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      ..++|||.|+ |.+|..++..+...|.+|++++++.+.........   +.    ..+ .|..+.+.+.+...++|+||.
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH   83 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH   83 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence            4568999997 99999999988888999998888765443322111   11    111 234445556666668999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      +++.
T Consensus        84 ~A~~   87 (351)
T PLN02650         84 VATP   87 (351)
T ss_pred             eCCC
Confidence            8863

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.0098  Score=45.40  Aligned_cols=75  Identities=15%  Similarity=0.194  Sum_probs=48.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCccchHHHHHHc---CCC---EEEcCCCHHHHHH----hc-----
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVERL---GAD---SFLVSRDQDEMQA----AM-----  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~-~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~----~~-----  104 (220)
                      .+.+++|.|+ |.+|..+++.+...|.+|++. .++.++.+...+.+   +..   ...|..+.+.+.+    ..     
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   84 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQI   84 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhcc
Confidence            3578999997 999999998888889988775 45554443333332   221   1235555443322    11     


Q ss_pred             ----CCccEEEEcCCC
Q 027664          105 ----GTMDGIIDTVSA  116 (220)
Q Consensus       105 ----~~~d~v~d~~g~  116 (220)
                          .++|++|.+.|.
T Consensus        85 ~~~~~~id~vi~~ag~  100 (254)
T PRK12746         85 RVGTSEIDILVNNAGI  100 (254)
T ss_pred             ccCCCCccEEEECCCC
Confidence                258999999875

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.74  E-value=0.016  Score=44.29  Aligned_cols=75  Identities=23%  Similarity=0.242  Sum_probs=48.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      .|+++||.|+ |++|..+++.+...|++|+.++..... .....+.++...   ..|-.+.+.++++       .+++|+
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~   88 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHIDI   88 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4689999997 899999999888889999887654321 111112333221   2344454433322       237999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus        89 li~~Ag~   95 (253)
T PRK08993         89 LVNNAGL   95 (253)
T ss_pred             EEECCCC
Confidence            9999975

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.74  E-value=0.016  Score=49.90  Aligned_cols=73  Identities=25%  Similarity=0.291  Sum_probs=57.3

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHhc-CCccEEEEcCCCc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~d~v~d~~g~~  117 (220)
                      ++++|.|.|.+|..+++.++..|.++++++.++++.+++ ++.|...++ |..+++.+++.. +.+|.++-+++++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~-~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~  492 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDEL-RERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNG  492 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCCh
Confidence            689999999999999999999999999999998887777 567765554 444455555543 4899888887765

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.74  E-value=0.0094  Score=45.92  Aligned_cols=75  Identities=16%  Similarity=0.279  Sum_probs=49.3

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCC---ccchHHHHHHcCCC--EEEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTS---PSKKSEAVERLGAD--SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~---~~~~~~~~~~~g~~--~~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+   +++|.++++.+...|++|+.+.+.   .++.+++.++++..  ...|..+++.++++       .+.
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG   84 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence            4789999994   589999998888889999887543   23334444444432  22455555444332       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        85 iD~lvnnAG~   94 (260)
T PRK06997         85 LDGLVHSIGF   94 (260)
T ss_pred             CcEEEEcccc
Confidence            9999998874

>PLN02214 cinnamoyl-CoA reductase

Probab=96.73  E-value=0.015  Score=46.73  Aligned_cols=76  Identities=24%  Similarity=0.271  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH-HHHHHcC-----CCEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS-EAVERLG-----ADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~-~~~~~~g-----~~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .++++|||.|+ |.+|..+++.+...|.+|++++++.++.. ...+.+.     ...+ .|..+.+.+.+...++|+||.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   87 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH   87 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence            35678999997 99999999988888999999988765321 1111221     1111 244455556666668999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      +++.
T Consensus        88 ~A~~   91 (342)
T PLN02214         88 TASP   91 (342)
T ss_pred             ecCC
Confidence            9875

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.73  E-value=0.01  Score=45.17  Aligned_cols=75  Identities=20%  Similarity=0.305  Sum_probs=48.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCccchHHHHHH---cCCCE---EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~-~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      .+.+++|.|+ |.+|..++..+...|++|++. .++.++.+++.+.   .+...   ..|..+++.+.++       .++
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999997 999999999888889988764 4554444333222   23321   1344454433322       236


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|.+.|.
T Consensus        83 id~vi~~ag~   92 (250)
T PRK08063         83 LDVFVNNAAS   92 (250)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.73  E-value=0.0096  Score=50.71  Aligned_cols=72  Identities=22%  Similarity=0.266  Sum_probs=51.5

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHH-hcCCccEEEEcCCCc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQA-AMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~d~v~d~~g~~  117 (220)
                      .+++++|.|+|++|.+++..+...|++|+++.++.++.+.+.+.++.. .+...+   ..+ .....|++++|++-.
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~-~~~~~~---~~~~~~~~~diiINtT~vG  450 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQ-ALTLAD---LENFHPEEGMILANTTSVG  450 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCc-eeeHhH---hhhhccccCeEEEecccCC
Confidence            467899999999999999999899999999988887777776666532 222211   111 123578999887643

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.73  E-value=0.013  Score=44.35  Aligned_cols=34  Identities=44%  Similarity=0.627  Sum_probs=29.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~   76 (220)
                      +.+|+|+|+|++|..++..+-..|. +++.++...
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            4679999999999999998888899 888777553

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05855 short chain dehydrogenase; Validated

Probab=96.72  E-value=0.0077  Score=51.72  Aligned_cols=75  Identities=23%  Similarity=0.249  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+.++||.|+ |++|..+++.+...|.+|++++++.++.+++.+.   .|..   ...|..+.+.+.++       .+.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  393 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVP  393 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999997 9999999988888899999999987766554333   2321   12355555444332       2369


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus       394 d~lv~~Ag~  402 (582)
T PRK05855        394 DIVVNNAGI  402 (582)
T ss_pred             cEEEECCcc
Confidence            999999985

>PRK07069 short chain dehydrogenase; Validated

Probab=96.72  E-value=0.011  Score=45.02  Aligned_cols=71  Identities=18%  Similarity=0.298  Sum_probs=47.8

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-ccchHHHHHHcC----CC----EEEcCCCHHHHHHh-------cCCcc
Q 027664           46 VGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVERLG----AD----SFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~-~~~~~~~~~~~g----~~----~~~~~~~~~~~~~~-------~~~~d  108 (220)
                      ++|.|+ |.+|..+++.+...|++|+++.++ .++.+++.+.+.    ..    ...|..+.+.+++.       .+++|
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   81 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS   81 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence            788987 999999998888889999999987 544444433332    11    12355554443322       24789


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      +++.++|.
T Consensus        82 ~vi~~ag~   89 (251)
T PRK07069         82 VLVNNAGV   89 (251)
T ss_pred             EEEECCCc
Confidence            99999874

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.71  E-value=0.014  Score=46.02  Aligned_cols=75  Identities=25%  Similarity=0.367  Sum_probs=55.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHH--HHHHcC-CC---EEE--cCCCHHHHHHhcCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSE--AVERLG-AD---SFL--VSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~--~~~~~g-~~---~~~--~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .+..|+|.|+ |-+|...+..+..+|.+|.+++++++....  .++++. +.   .++  |-.+++...+..+|.|.||.
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH   84 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH   84 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence            5788999998 999999999999999999999999886322  234554 21   111  33345556666779999998


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++..
T Consensus        85 ~Asp   88 (327)
T KOG1502|consen   85 TASP   88 (327)
T ss_pred             eCcc
Confidence            8765

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.70  E-value=0.021  Score=44.33  Aligned_cols=96  Identities=20%  Similarity=0.244  Sum_probs=70.2

Q ss_pred             cccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH
Q 027664           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  100 (220)
                      ..||+..+....+...+---.|++++|+|- ..+|.-++.++...|+.|++......                     .+
T Consensus       137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~---------------------~l  195 (284)
T PRK14190        137 FLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTK---------------------NL  195 (284)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCch---------------------hH
Confidence            467776666666666653357999999996 78999999999999999987643211                     13


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .+.....|+++-++|.+..+.  -+.+++|..++.+|...
T Consensus       196 ~~~~~~ADIvI~AvG~p~~i~--~~~ik~gavVIDvGi~~  233 (284)
T PRK14190        196 AELTKQADILIVAVGKPKLIT--ADMVKEGAVVIDVGVNR  233 (284)
T ss_pred             HHHHHhCCEEEEecCCCCcCC--HHHcCCCCEEEEeeccc
Confidence            344457899999999886433  45678898999998654

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=96.70  E-value=0.028  Score=43.88  Aligned_cols=104  Identities=14%  Similarity=0.185  Sum_probs=70.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-C---CCEEEcCCCHHHHHHhc---------CCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-G---ADSFLVSRDQDEMQAAM---------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~---------~~~  107 (220)
                      .++-|+|.|+ ++.|..++.-+...|..|++.+.+++.-+.+.... .   -+..+|..+++.+++..         ++.
T Consensus        28 ~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~gL  107 (322)
T KOG1610|consen   28 SDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDGL  107 (322)
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccccc
Confidence            5566999998 99999999988899999999998877655554443 1   14456777766554432         267


Q ss_pred             cEEEEcCCCcc--------------------------cHHHHHhcccc-CCEEEEeCCCCCCCCC
Q 027664          108 DGIIDTVSAVH--------------------------PLMPLIGLLKS-QGKLVLLGAPEKPLEL  145 (220)
Q Consensus       108 d~v~d~~g~~~--------------------------~~~~~~~~l~~-~G~~v~~g~~~~~~~~  145 (220)
                      -.+++++|-..                          .....+.++++ .||+|.++...+....
T Consensus       108 wglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~~  172 (322)
T KOG1610|consen  108 WGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVAL  172 (322)
T ss_pred             eeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCccC
Confidence            78888887320                          01233445555 5999999887764433

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.70  E-value=0.016  Score=44.86  Aligned_cols=86  Identities=13%  Similarity=0.188  Sum_probs=54.5

Q ss_pred             EEEEEccchhHHHHHHHHHHC--CCeEEE-EeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM--GVKVTV-ISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~--g~~vi~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  121 (220)
                      ++.|+|+|.+|...++.....  +.+++. .+++.++.+.+.+.++.. .+  .+.   +++...+|+|++|++.....+
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~-~~--~~~---~ell~~~DvVvi~a~~~~~~~   76 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAK-AC--LSI---DELVEDVDLVVECASVNAVEE   76 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCe-eE--CCH---HHHhcCCCEEEEcCChHHHHH
Confidence            588999999999888766554  466554 455555555555555542 21  222   233357999999998765555


Q ss_pred             HHHhccccCCEEEEe
Q 027664          122 PLIGLLKSQGKLVLL  136 (220)
Q Consensus       122 ~~~~~l~~~G~~v~~  136 (220)
                      .+..+++.|-.++..
T Consensus        77 ~~~~al~~Gk~Vvv~   91 (265)
T PRK13304         77 VVPKSLENGKDVIIM   91 (265)
T ss_pred             HHHHHHHcCCCEEEE
Confidence            666677765555543

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.013  Score=44.93  Aligned_cols=74  Identities=19%  Similarity=0.327  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |.+|..+++.+...|++|+.+.++... ....+.   .+..   ...|..+.+.++++       .+.+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   83 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEI-EKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI   83 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHH-HHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5688999997 999999998888889999999887642 222122   2322   12355554443332       2378


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|.++|.
T Consensus        84 d~vi~~ag~   92 (263)
T PRK08226         84 DILVNNAGV   92 (263)
T ss_pred             CEEEECCCc
Confidence            999999884

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.70  E-value=0.026  Score=37.57  Aligned_cols=90  Identities=19%  Similarity=0.281  Sum_probs=59.9

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHhc-CCccEEEEcCCCcccHHH-
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVHPLMP-  122 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~d~v~d~~g~~~~~~~-  122 (220)
                      |+|.|.|.+|..+++.++..+.+|++++.++++.+.+ +..|...+. |..+++.+++.. ..++.++-+++++..-.. 
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~-~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~   79 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEEL-REEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI   79 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHH-HHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHH-HhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH
Confidence            6788999999999999999666999999998877776 455654332 334455566553 489999988887642222 


Q ss_pred             --HHhccccCCEEEEe
Q 027664          123 --LIGLLKSQGKLVLL  136 (220)
Q Consensus       123 --~~~~l~~~G~~v~~  136 (220)
                        ..+.+.+..+++..
T Consensus        80 ~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   80 ALLARELNPDIRIIAR   95 (116)
T ss_dssp             HHHHHHHTTTSEEEEE
T ss_pred             HHHHHHHCCCCeEEEE
Confidence              23333444555543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=96.70  E-value=0.038  Score=47.13  Aligned_cols=89  Identities=26%  Similarity=0.335  Sum_probs=63.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|+++.|+|-|.+|..+++.++.+|.+|++.++... .+.. ..+|...+   .   .++++....|+|+-+++...   
T Consensus       137 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~-~~~g~~~~---~---~l~ell~~aDvV~l~lPlt~~T~  208 (525)
T TIGR01327       137 YGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYIS-PERA-EQLGVELV---D---DLDELLARADFITVHTPLTPETR  208 (525)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHH-HhcCCEEc---C---CHHHHHhhCCEEEEccCCChhhc
Confidence            568999999999999999999999999999987532 1222 34554321   1   24445557899998887432   


Q ss_pred             -cH-HHHHhccccCCEEEEeCC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g~  138 (220)
                       .+ ...++.|+++..++.++-
T Consensus       209 ~li~~~~l~~mk~ga~lIN~aR  230 (525)
T TIGR01327       209 GLIGAEELAKMKKGVIIVNCAR  230 (525)
T ss_pred             cCcCHHHHhcCCCCeEEEEcCC
Confidence             12 356778888888888764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=96.69  E-value=0.012  Score=46.21  Aligned_cols=94  Identities=22%  Similarity=0.140  Sum_probs=64.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHH-HCCC-eEEEEeCCccchHHHHHHcCC-CEEEcCCCHHHHHHhc-CCccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAM-GTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~-~~g~-~vi~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~-~~~d~v~d~~g~  116 (220)
                      ..+.|+|..| +-+++.++.+++ ..+. +++.++....  ..+.+.+|. +.++.|++.+   ++. ..--+++|+.|+
T Consensus       135 ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N--~~Fve~lg~Yd~V~~Yd~i~---~l~~~~~~v~VDfaG~  209 (314)
T PF11017_consen  135 GAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARN--VAFVESLGCYDEVLTYDDID---SLDAPQPVVIVDFAGN  209 (314)
T ss_pred             CccEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcc--hhhhhccCCceEEeehhhhh---hccCCCCEEEEECCCC
Confidence            4466777777 777888887777 4444 8888887754  457788985 8888886543   332 356688999999


Q ss_pred             cccHHHHHhccccC-CEEEEeCCCC
Q 027664          117 VHPLMPLIGLLKSQ-GKLVLLGAPE  140 (220)
Q Consensus       117 ~~~~~~~~~~l~~~-G~~v~~g~~~  140 (220)
                      ......+-..+... -..+.+|..+
T Consensus       210 ~~~~~~Lh~~l~d~l~~~~~VG~th  234 (314)
T PF11017_consen  210 GEVLAALHEHLGDNLVYSCLVGATH  234 (314)
T ss_pred             HHHHHHHHHHHhhhhhEEEEEEccC
Confidence            87666666666554 2456666544

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=96.69  E-value=0.017  Score=41.99  Aligned_cols=74  Identities=18%  Similarity=0.290  Sum_probs=54.3

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--CEE---EcCCCHHHHH----Hh---cCCccE
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSF---LVSRDQDEMQ----AA---MGTMDG  109 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~~~---~~~~~~~~~~----~~---~~~~d~  109 (220)
                      .+..+|.|+ +++|.+..|.+...|++|.+.+.+.+.-++.++.++.  ++.   .|.++.+.++    +.   .+.+++
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~psv   93 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPSV   93 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCcE
Confidence            456778886 8999999999999999999999988777777777875  222   2344433322    22   237999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++|.|-
T Consensus        94 lVncAGI  100 (256)
T KOG1200|consen   94 LVNCAGI  100 (256)
T ss_pred             EEEcCcc
Confidence            9999985

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.69  E-value=0.036  Score=42.93  Aligned_cols=96  Identities=15%  Similarity=0.205  Sum_probs=70.0

Q ss_pred             cccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH
Q 027664           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  100 (220)
                      ..||+.......+...+---.|++++|+|- ..+|.=++.++...|+.|++....-..                     +
T Consensus       137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~---------------------l  195 (278)
T PRK14172        137 FLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKN---------------------L  195 (278)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCC---------------------H
Confidence            457766666666666553357999999996 789999999999999988877643221                     2


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .+.+...|+++-++|.+..+.  -+.+++|-.++.+|...
T Consensus       196 ~~~~~~ADIvIsAvGkp~~i~--~~~ik~gavVIDvGin~  233 (278)
T PRK14172        196 KEVCKKADILVVAIGRPKFID--EEYVKEGAIVIDVGTSS  233 (278)
T ss_pred             HHHHhhCCEEEEcCCCcCccC--HHHcCCCcEEEEeeccc
Confidence            333446799999999986443  45588999999988644

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.015  Score=43.47  Aligned_cols=72  Identities=15%  Similarity=0.213  Sum_probs=49.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-CCCE-EEcCCCHHHHHHhcC---CccEEEEcCCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-GADS-FLVSRDQDEMQAAMG---TMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~---~~d~v~d~~g~  116 (220)
                      +++||.|+ |.+|..++..+... .+|++++++.++.+.+.+.. +... ..|..+.+.+.+...   ++|++|.++|.
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   81 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGV   81 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            57999997 99999998766655 89999999876655543333 2221 234555555555443   69999999885

>PRK14967 putative methyltransferase; Provisional

Probab=96.69  E-value=0.046  Score=41.10  Aligned_cols=93  Identities=27%  Similarity=0.242  Sum_probs=58.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHH---HcCCCEEEcCCCHHHHHHhc-CCccEEEEcC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE---RLGADSFLVSRDQDEMQAAM-GTMDGIIDTV  114 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~-~~~d~v~d~~  114 (220)
                      ++++++||-.|+|. |..+..+++. +. +++.++.++.....+.+   ..+.+..+...+..  .... +.||+|+-..
T Consensus        34 ~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~--~~~~~~~fD~Vi~np  109 (223)
T PRK14967         34 LGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWA--RAVEFRPFDVVVSNP  109 (223)
T ss_pred             cCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchh--hhccCCCeeEEEECC
Confidence            57889999999986 8888888775 66 99999999875544322   23332222222211  1122 3799998642


Q ss_pred             CCc---------------------------ccHHHHHhccccCCEEEEe
Q 027664          115 SAV---------------------------HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       115 g~~---------------------------~~~~~~~~~l~~~G~~v~~  136 (220)
                      +..                           ..+..+.+.|+++|+++.+
T Consensus       110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            210                           0234567899999999865

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.68  E-value=0.017  Score=43.05  Aligned_cols=98  Identities=28%  Similarity=0.242  Sum_probs=59.9

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCEE-EcCCC-HHHHHHhcCCccEEEE
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSF-LVSRD-QDEMQAAMGTMDGIID  112 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~~-~~~~~-~~~~~~~~~~~d~v~d  112 (220)
                      ..++++.+||-+|+|. |..+..+++.. .+++.++.+++..+.+.+.   ++.+.+ +...+ .+... ..+.||.|+-
T Consensus        74 l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I~~  150 (212)
T PRK00312         74 LELKPGDRVLEIGTGS-GYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-AYAPFDRILV  150 (212)
T ss_pred             cCCCCCCEEEEECCCc-cHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-cCCCcCEEEE
Confidence            3468899999999864 55555566553 4899999887655444333   343211 11111 11110 1146999876


Q ss_pred             cCCCcccHHHHHhccccCCEEEEeCC
Q 027664          113 TVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ...-......+.+.|+++|+++..-.
T Consensus       151 ~~~~~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        151 TAAAPEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             ccCchhhhHHHHHhcCCCcEEEEEEc
Confidence            55444456778899999999886543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.68  E-value=0.006  Score=45.01  Aligned_cols=95  Identities=18%  Similarity=0.167  Sum_probs=58.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCCEE-EcCCCHHHHHHhcCCccEEEEcCC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADSF-LVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      ..++.+||-+|+|. |..+..+++. |.+|++++.+++..+.+.+   ..+...+ +...+.... .+.+.||+|+....
T Consensus        28 ~~~~~~vLDiGcG~-G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~I~~~~~  104 (197)
T PRK11207         28 VVKPGKTLDLGCGN-GRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-TFDGEYDFILSTVV  104 (197)
T ss_pred             cCCCCcEEEECCCC-CHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-CcCCCcCEEEEecc
Confidence            45678899999874 7778888875 8899999999875544432   2232211 111111111 12346999986543


Q ss_pred             C--------cccHHHHHhccccCCEEEEeC
Q 027664          116 A--------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       116 ~--------~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      -        ...+..+.+.|+++|.++.+.
T Consensus       105 ~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207        105 LMFLEAKTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            1        124667888999999965543

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.67  E-value=0.023  Score=43.01  Aligned_cols=75  Identities=21%  Similarity=0.311  Sum_probs=48.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHHH---HcCCCEE---EcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVE---RLGADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~~---~~g~~~~---~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |.+|..++..+...|++|+++.++..+ ......   ..+....   .|..+.+.+.+.       ..+
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4578999997 999999999888889999777776543 222212   2232211   245554433322       136


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|.++.++|.
T Consensus        84 id~vi~~ag~   93 (248)
T PRK05557         84 VDILVNNAGI   93 (248)
T ss_pred             CCEEEECCCc
Confidence            8999999875

>PLN02244 tocopherol O-methyltransferase

Probab=96.67  E-value=0.013  Score=47.10  Aligned_cols=97  Identities=20%  Similarity=0.190  Sum_probs=61.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCC--EEEcCCCHHHHHHhcCCccEEEEcCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~--~~~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      +++++||-+|+|. |..+..+++..|++|+.++.++...+.+.+   ..+..  ..+...+...+.-..+.||+|+-.-.
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~  195 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES  195 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence            6788999999874 777788888889999999999875544422   22321  11111111111001236999975332


Q ss_pred             C------cccHHHHHhccccCCEEEEeCC
Q 027664          116 A------VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       116 ~------~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      .      ...+..+.+.|++||+++....
T Consensus       196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        196 GEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             hhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            1      1246778899999999998754

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.66  E-value=0.035  Score=43.15  Aligned_cols=97  Identities=21%  Similarity=0.246  Sum_probs=71.2

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ..+||+.......+...+---.|++++|+|- ..+|.=++.++...|+.|++....-..                     
T Consensus       137 ~~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~---------------------  195 (284)
T PRK14177        137 TYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQN---------------------  195 (284)
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCC---------------------
Confidence            3467766666666666553357999999996 789999999999999998877644221                     


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +++.+..+|+++-++|.+..+.  -+.+++|..++.+|...
T Consensus       196 l~~~~~~ADIvIsAvGk~~~i~--~~~ik~gavVIDvGin~  234 (284)
T PRK14177        196 LPSIVRQADIIVGAVGKPEFIK--ADWISEGAVLLDAGYNP  234 (284)
T ss_pred             HHHHHhhCCEEEEeCCCcCccC--HHHcCCCCEEEEecCcc
Confidence            2333456799999999886433  56788999999998743

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.66  E-value=0.01  Score=51.63  Aligned_cols=75  Identities=20%  Similarity=0.384  Sum_probs=59.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHhc-CCccEEEEcCCCcc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVH  118 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~d~v~d~~g~~~  118 (220)
                      .++|+|.|.|.+|+.+++.++..|.++++++.++++.+.+ ++.|.+.++ |..+++.+++.. +.+|.++-|+++++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~-~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~  476 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETL-RKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQ  476 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHH-HhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence            3689999999999999999999999999999999887777 567765443 444555555543 48999999998864

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.66  E-value=0.0076  Score=42.73  Aligned_cols=91  Identities=19%  Similarity=0.270  Sum_probs=57.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-----CCEEEcCC--CHHHHHHhcCCccEEEEcCCCc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-----ADSFLVSR--DQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-----~~~~~~~~--~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      +|.|+|+|..|.+++..+...|.+|....++++..+.+.+.-.     .+..+...  -.+.+++..++.|+++-++...
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            5789999999999999999999999999999876666643221     00001000  0123445556899999999886


Q ss_pred             ccHHHHHhcccc---CCEEEEe
Q 027664          118 HPLMPLIGLLKS---QGKLVLL  136 (220)
Q Consensus       118 ~~~~~~~~~l~~---~G~~v~~  136 (220)
                       ..+..++.+++   .+..+..
T Consensus        81 -~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   81 -AHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             -GHHHHHHHHTTTSHTT-EEEE
T ss_pred             -HHHHHHHHHhhccCCCCEEEE
Confidence             45555555554   3444444

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.66  E-value=0.012  Score=44.46  Aligned_cols=73  Identities=15%  Similarity=0.179  Sum_probs=46.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CccchHHHHHHc---CC--C-EEEcCCCHHHHHH-------hcCCcc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERL---GA--D-SFLVSRDQDEMQA-------AMGTMD  108 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~-~~~~~~~~~~~~---g~--~-~~~~~~~~~~~~~-------~~~~~d  108 (220)
                      +++||.|+ |.+|..+++.+...|++++++.+ +.++.+.....+   +.  . ...|..+.+.+.+       ..+.+|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID   80 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence            46899997 99999999988888999988887 333333322222   21  1 1234444443322       224699


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|.+.|.
T Consensus        81 ~vi~~ag~   88 (242)
T TIGR01829        81 VLVNNAGI   88 (242)
T ss_pred             EEEECCCC
Confidence            99999974

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.66  E-value=0.012  Score=41.33  Aligned_cols=91  Identities=24%  Similarity=0.301  Sum_probs=58.2

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCH--------HHHHHhcCCccEEEEcCCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ--------DEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~--------~~~~~~~~~~d~v~d~~g~~  117 (220)
                      |+|+|+|.+|...+..++..|.+|..+.+.+ +.+.+ ++.|........+.        .......+.+|++|-|+=..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~   78 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAI-KEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY   78 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHH-HHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhh-hheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc
Confidence            6899999999999988877999999999998 55554 45554322211000        00112235899999998664


Q ss_pred             c---cHHHHHhccccCCEEEEeCC
Q 027664          118 H---PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       118 ~---~~~~~~~~l~~~G~~v~~g~  138 (220)
                      .   .++.+...+.+...++.+-.
T Consensus        79 ~~~~~l~~l~~~~~~~t~iv~~qN  102 (151)
T PF02558_consen   79 QLEQALQSLKPYLDPNTTIVSLQN  102 (151)
T ss_dssp             GHHHHHHHHCTGEETTEEEEEESS
T ss_pred             chHHHHHHHhhccCCCcEEEEEeC
Confidence            3   23444555666667777644

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PLN02427 UDP-apiose/xylose synthase

Probab=96.65  E-value=0.014  Score=47.64  Aligned_cols=74  Identities=11%  Similarity=0.118  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcC-------CCEE-EcCCCHHHHHHhcCCccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLG-------ADSF-LVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g-------~~~~-~~~~~~~~~~~~~~~~d~v~  111 (220)
                      +..+|||.|+ |-+|..+++.+... |.+|++++++.++...+. ..+       .+.+ .|..+.+.+.+...++|+||
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~-~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~Vi   91 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLL-EPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTI   91 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhh-ccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEE
Confidence            4467999997 99999999888777 579999987765443331 111       2221 24445556666666899999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      .+++.
T Consensus        92 HlAa~   96 (386)
T PLN02427         92 NLAAI   96 (386)
T ss_pred             Ecccc
Confidence            99973

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.0095  Score=46.77  Aligned_cols=75  Identities=13%  Similarity=0.225  Sum_probs=61.6

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      ...++|+|+ |-.|.+++..++..|.+.....++..++..+...||.+. ++.-..+..++++..++++|++|+|..
T Consensus         6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGPy   82 (382)
T COG3268           6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGPY   82 (382)
T ss_pred             ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEeccccc
Confidence            345788998 999999999999999988888999999998888888633 344344677778888999999999964

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.021  Score=43.82  Aligned_cols=75  Identities=19%  Similarity=0.191  Sum_probs=48.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc-cchHHHHHH---cCCC---EEEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVER---LGAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~-~~~~~~~~~---~g~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++.+.. ++.+.+.+.   .+..   ...|..+.+.+.+.       .++
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~   87 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGP   87 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999997 9999999988888899988776643 333333222   2332   12355554433322       246


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|.++|.
T Consensus        88 iD~vi~~ag~   97 (258)
T PRK09134         88 ITLLVNNASL   97 (258)
T ss_pred             CCEEEECCcC
Confidence            8999999874

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.63  E-value=0.015  Score=44.37  Aligned_cols=74  Identities=20%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-ccchHHHHHHcCCCE---EEcCCCHHHHHHh-------cCC-cc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGT-MD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~-~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~-~d  108 (220)
                      .++++||.|+ |.+|..++..+...|++|+.+.++ .++.+.+...++...   ..|..+.+.++++       .++ +|
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id   83 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPIT   83 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCe
Confidence            3578999997 999999999888889999876654 333344434444211   1244454433322       133 99


Q ss_pred             EEEEcCC
Q 027664          109 GIIDTVS  115 (220)
Q Consensus       109 ~v~d~~g  115 (220)
                      ++|.+.|
T Consensus        84 ~li~~ag   90 (253)
T PRK08642         84 TVVNNAL   90 (253)
T ss_pred             EEEECCC
Confidence            9999876

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.63  E-value=0.04  Score=34.71  Aligned_cols=34  Identities=29%  Similarity=0.353  Sum_probs=27.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVIST   74 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~   74 (220)
                      -.+++++|.|+|.+|..+++.+...+. ++.+.++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            467899999999999999999888854 6766655

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.63  E-value=0.0065  Score=50.83  Aligned_cols=117  Identities=10%  Similarity=-0.014  Sum_probs=71.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc-chHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      -.|.+|||+|+|.++.-=++.+...|++|+++...-. ....+. ..|--..+. .+  .......++++||-|+++...
T Consensus        10 l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~-~~~~i~~~~-~~--~~~~dl~~~~lv~~at~d~~~   85 (457)
T PRK10637         10 LRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWA-DAGMLTLVE-GP--FDESLLDTCWLAIAATDDDAV   85 (457)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH-hCCCEEEEe-CC--CChHHhCCCEEEEECCCCHHH
Confidence            3678999999999998878888889999988875532 222232 222111111 11  111223588999999998754


Q ss_pred             HHHHHhccccCCEEEEeCCCCCCCCCCchhhhcC-CeEEEEEe
Q 027664          120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG-RKIVGGSL  161 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~  161 (220)
                      -.+.....+..|.++..........|-.+.++.+ .+++.-+.
T Consensus        86 n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT  128 (457)
T PRK10637         86 NQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSS  128 (457)
T ss_pred             hHHHHHHHHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEEC
Confidence            4556666667788888766544444444433333 45554443

>TIGR00417 speE spermidine synthase

Probab=96.63  E-value=0.028  Score=43.64  Aligned_cols=95  Identities=21%  Similarity=0.161  Sum_probs=55.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCC-C--------EEEcCCCHHHHHHhcCCccEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA-D--------SFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~-~--------~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      +..++||++|+|. |..+..+++.... +++.++.+++-.+.+.+.+.. .        .++..+..+.+++..+.||+|
T Consensus        71 ~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI  149 (270)
T TIGR00417        71 PNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI  149 (270)
T ss_pred             CCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence            3456999999864 5555566666545 788888887654444332211 0        111111123333334589998


Q ss_pred             EEcCC----C------cccHHHHHhccccCCEEEEe
Q 027664          111 IDTVS----A------VHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       111 ~d~~g----~------~~~~~~~~~~l~~~G~~v~~  136 (220)
                      +--..    .      .+.++.+.+.|+++|.++..
T Consensus       150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            74222    1      12356788999999999976

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.62  E-value=0.024  Score=45.26  Aligned_cols=102  Identities=17%  Similarity=0.245  Sum_probs=66.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCccchHHHHHHc---CCCEEEcCCCHHHHHHhcCCccEEEEcCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERL---GADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~-~~g~-~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      +...++.|+|+|.+|...++.+. .... +|.+.+++.++.+.+++.+   |..... ..   ..++...+.|+|+-|++
T Consensus       126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~-~~---~~~eav~~aDiVitaT~  201 (325)
T TIGR02371       126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRA-AT---DPREAVEGCDILVTTTP  201 (325)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEE-eC---CHHHHhccCCEEEEecC
Confidence            55688999999999988765544 3455 8999999988877765543   322111 11   23344468999999987


Q ss_pred             CcccHHHHHhccccCCEEEEeCCCCC-CCCCCc
Q 027664          116 AVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPA  147 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~  147 (220)
                      +...+ ...+.+++|-++..+|.... ..+++.
T Consensus       202 s~~P~-~~~~~l~~g~~v~~vGs~~p~~~Eld~  233 (325)
T TIGR02371       202 SRKPV-VKADWVSEGTHINAIGADAPGKQELDP  233 (325)
T ss_pred             CCCcE-ecHHHcCCCCEEEecCCCCcccccCCH
Confidence            65322 12346788889999987543 234443

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK04266 fibrillarin; Provisional

Probab=96.62  E-value=0.039  Score=41.66  Aligned_cols=97  Identities=20%  Similarity=0.186  Sum_probs=59.5

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccchHHHHHH---c-CCCEEE-cCCCHHHHHHhcCCccEEEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVER---L-GADSFL-VSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~~---~-g~~~~~-~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .+++|++||=.|+|+ |..+..+++..+ .+|++++.+++..+.+.+.   . +...+. |..++.....+.+.+|+++-
T Consensus        69 ~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~  147 (226)
T PRK04266         69 PIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ  147 (226)
T ss_pred             CCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE
Confidence            478999999999864 556666777664 4899999998655444222   1 222221 11111111122346999985


Q ss_pred             cCCCcc----cHHHHHhccccCCEEEEe
Q 027664          113 TVSAVH----PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       113 ~~g~~~----~~~~~~~~l~~~G~~v~~  136 (220)
                      -...+.    .+..+.+.|++||+++..
T Consensus       148 d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        148 DVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             CCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            444321    256778899999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	220
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		1e-89
2cf5_A	357	Crystal Structures Of The Arabidopsis Cinnamyl Alco		7e-52
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		1e-42
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		4e-31
1ps0_A	360	Crystal Structure Of The Nadp(H)-Dependent Cinnamyl		5e-21
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		1e-19
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		7e-19
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		7e-19
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		1e-15
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		1e-14
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		2e-12
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		3e-08
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		3e-08
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		3e-07

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/219 (71%), Positives = 179/219 (81%)
Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
           MVA+E +++R P+  PLD  APLLCAGITVYSPL+++GLD+PG                K
Sbjct: 146 MVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVK 205
Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KVTVISTSPSKK EA++  GADSFLVSRDQ++MQAA GT+DGIIDTVSAVHPL
Sbjct: 206 FAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL 265
Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL GLLKS GKL+L+GAPEKPLELPAF L+ GRKIV GS IGG+KETQEMIDFAAKHNI
Sbjct: 266 LPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNI 325
Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 219
            ADIEVI  DY+NTAMERLAK DVRYRFVIDV NT+ +T
Sbjct: 326 TADIEVISTDYLNTAMERLAKNDVRYRFVIDVGNTLAAT 364

>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol Dehydrogenases, Atcad5 Length = 357

Iteration: 1
 Score =  199 bits (507), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 101/214 (47%), Positives = 137/214 (64%)
Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
           V  + FVV+IPEG  ++  APLLCAG+TVYSPL  +GL +PG+               K 
Sbjct: 140 VVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKI 199
Query: 62  AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM 121
           AKAMG  VTVIS+S  K+ EA++ LGAD +++  DQ +M     ++D +IDTV   H L 
Sbjct: 200 AKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALE 259
Query: 122 PLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIR 181
           P + LLK  GKL+L+G    PL+     L+ GRK++ GS IG +KET+EM++F  +  + 
Sbjct: 260 PYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGLS 319
Query: 182 ADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 215
           + IEV+  DYVNTA ERL K DVRYRFV+DV  +
Sbjct: 320 SIIEVVKMDYVNTAFERLEKNDVRYRFVVDVEGS 353

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score =  169 bits (427), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/213 (46%), Positives = 128/213 (60%), Gaps = 4/213 (1%)
Query: 1   MVADEHFVVRIPE-GAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
           +V  E +V+RI      L A APLLCAGIT YSPLR +    PG                
Sbjct: 153 IVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQA-GPGKKVGVVGIGGLGHMGI 211
Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           K A AMG  V   +TS +K+ EA + LGAD  + SR+ DEM A + + D I++TV+A H 
Sbjct: 212 KLAHAMGAHVVAFTTSEAKR-EAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN 270
Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELP-AFPLLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
           L     LLK  G + L+GAP  P + P  F L+  R+ + GS+IGG+ ETQEM+DF A+H
Sbjct: 271 LDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEH 330
Query: 179 NIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
            I ADIE+I AD +N A ER+ + DV+YRFVID
Sbjct: 331 GIVADIEMIRADQINEAYERMLRGDVKYRFVID 363

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 14/221 (6%)
Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
           +V DE++V+ + + APL+  APLLCAGIT YSPL+F  + K G                K
Sbjct: 136 IVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTK-GTKVGVAGFGGLGSMAVK 194
Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           +A AMG +V+V + +  KK +A+  +G   F     Q + +     +D II T+   + L
Sbjct: 195 YAVAMGAEVSVFARNEHKKQDALS-MGVKHFYTDPKQCKEE-----LDFIISTIPTHYDL 248
Query: 121 MPLIGLLKSQGKLVLLGAPEKPLE----LPAFPLLT-GRKIVGGSLIGGLKETQEMIDFA 175
              + LL   G L L+G P  P+E    L  F  +  G + V GSLIGG+KETQEM+DF+
Sbjct: 249 KDYLKLLTYNGDLALVGLP--PVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFS 306
Query: 176 AKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
            KHNI  +I++I    ++TA   L     ++R+VID+  + 
Sbjct: 307 IKHNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSF 347

>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl Alcohol Dehydrogenase From Saccharomyces Cerevisiae Length = 360

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 11/213 (5%)
Query: 5   EHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKA 64
           EHFVV IPE  P    APLLC G+TVYSPL   G   PG                  +KA
Sbjct: 143 EHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCG-PGKKVGIVGLGGIGSMGTLISKA 201
Query: 65  MGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ-DEMQAAMGTMDGIIDTVSAV----HP 119
           MG +  VIS S  K+ +A+ ++GAD ++ + ++ D  +    T D I+   S++      
Sbjct: 202 MGAETYVISRSSRKREDAM-KMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFN 260
Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHN 179
           +MP    +K  G++V +  PE+   L   P       +  S +G +KE  +++   ++ +
Sbjct: 261 IMP--KAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKD 318
Query: 180 IRADIEVIPADY--VNTAMERLAKADVRYRFVI 210
           I+  +E +P     V+ A ER+ K DVRYRF +
Sbjct: 319 IKIWVETLPVGEAGVHEAFERMEKGDVRYRFTL 351

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 5/214 (2%)
Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
           +VAD ++V  +P+       AP+LCAG+TVY  L+     +PG                +
Sbjct: 126 VVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDT-RPGQWVVISGIGGLGHVAVQ 184
Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTMDGIIDTVSAV 117
           +A+AMG++V  +    +K + A  RLGA+  + +RD D    +Q  +G   G++ T  + 
Sbjct: 185 YARAMGLRVAAVDIDDAKLNLA-RRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSP 243
Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK 177
                 IG+++  G + L G P      P F ++     + GS++G   + QE +DFAA 
Sbjct: 244 KAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLDFAAH 303
Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
            +++A +     D VN    RL +  V  R V+D
Sbjct: 304 GDVKATVSTAKLDDVNDVFGRLREGKVEGRVVLD 337

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 7/208 (3%)
Query: 7   FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMG 66
           +VV+IP+    +  AP+ CAG+T Y  L+  G  KPG                ++AKAMG
Sbjct: 130 YVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGLGHVAVQYAKAMG 188
Query: 67  VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE---MQAAMGTMDGIIDTVSAVHPLMPL 123
           + V  +     +K E  + LGAD  +    +D    M+  +G +   + T  +       
Sbjct: 189 LNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSA 247
Query: 124 IGLLKSQGKLVLLGAPEKPLELPAF-PLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRA 182
              ++  G  VL+G P + + +P F  +L G KI+G S++G  K+ QE + FAA+  ++ 
Sbjct: 248 YNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG-SIVGTRKDLQEALQFAAEGKVKT 306
Query: 183 DIEVIPADYVNTAMERLAKADVRYRFVI 210
            IEV P + +N   +R+ K  +  R V+
Sbjct: 307 IIEVQPLEKINEVFDRMLKGQINGRVVL 334

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 7/208 (3%)
Query: 7   FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMG 66
           +VV+IP+    +  AP+ CAG+T Y  L+  G  KPG                ++AKAMG
Sbjct: 130 YVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGFGHVAVQYAKAMG 188
Query: 67  VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE---MQAAMGTMDGIIDTVSAVHPLMPL 123
           + V  +     +K E  + LGAD  +    +D    M+  +G +   + T  +       
Sbjct: 189 LNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSA 247
Query: 124 IGLLKSQGKLVLLGAPEKPLELPAF-PLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRA 182
              ++  G  VL+G P + + +P F  +L G KI+G S++G  K+ QE + FAA+  ++ 
Sbjct: 248 YNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG-SIVGTRKDLQEALQFAAEGKVKT 306
Query: 183 DIEVIPADYVNTAMERLAKADVRYRFVI 210
            IEV P + +N   +R+ K  +  R V+
Sbjct: 307 IIEVQPLEKINEVFDRMLKGQINGRVVL 334

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 5/215 (2%)
Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
           ++AD ++V  +P+       AP+LCAG+TVY  L+     +PG                +
Sbjct: 130 VLADPNYVGILPKNVEFAEIAPILCAGVTVYKGLKQTNA-RPGQWVAISGIGGLGHVAVQ 188
Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA---MGTMDGIIDTVSAV 117
           +A+AMG+ V  I    +K  E   +LGA   + +R +D ++A    +G   G++ T  + 
Sbjct: 189 YARAMGLHVAAIDIDDAKL-ELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSN 247
Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK 177
                 IG+ +  G + L+G P      P F ++     + GS++G   + QE +DFA +
Sbjct: 248 SAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEALDFAGE 307
Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV 212
             ++A I     D +N  ++++    +  R V+++
Sbjct: 308 GLVKATIHPGKLDDINQILDQMRAGQIEGRIVLEM 342

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 7/217 (3%)
Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
           +VAD +FV  +P+    +  AP+LCAG+TVY  L+     KPG                +
Sbjct: 149 VVADPNFVGHLPKNIDFNEIAPVLCAGVTVYKGLKVTDT-KPGDWVVISGIGGLGHMAVQ 207
Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTVS 115
           +A+AMG+ V  +     +K +   RLGA   + ++   +  A +     G   G++ T  
Sbjct: 208 YARAMGLNVAAVDID-DRKLDLARRLGATVTVNAKTVADPAAYIRKETDGGAQGVLVTAV 266
Query: 116 AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFA 175
           +       +G++   G + L G P     L  F ++     V GS++G   + QE +DFA
Sbjct: 267 SPKAFEQALGMVARGGTVSLNGLPPGDFPLSIFNMVLNGVTVRGSIVGTRLDLQESLDFA 326
Query: 176 AKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV 212
           A   ++A I+    + +N   + + + ++  R V+D+
Sbjct: 327 ADGKVKATIQTGKLEDINAIFDDMRQGNIEGRIVMDL 363

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 7/217 (3%)
Query: 3   ADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFA 62
           AD      IP+G  L   AP+LCAGITVY  L+   L                    ++A
Sbjct: 131 ADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYA 190
Query: 63  KAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM----GTMDGIIDTVSAV 117
           KAMG +V  I     K+ E    +G + F+  ++++D + A +    G   G+I+   + 
Sbjct: 191 KAMGYRVLGIDGGEGKE-ELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSE 249
Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELP-AFPLLTGRKIVGGSLIGGLKETQEMIDFAA 176
             +      +++ G  VL+G P         F  +     + GS +G   +T+E +DF A
Sbjct: 250 AAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFA 309
Query: 177 KHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA 213
           +  +++ I+V+    +    E++ K  +  R+V+D +
Sbjct: 310 RGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTS 346

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 1   MVADEHFVVRIPEGA-PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
           +VAD  + V++P+G  P++A++ + CAG+T Y  ++  G+ KPG                
Sbjct: 125 VVAD--YAVKVPDGLDPIEASS-ITCAGVTTYKAIKVSGV-KPGDWQVIFGAGGLGNLAI 180
Query: 60  KFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ---DEMQ---AAMGTMDGIID 112
           ++AK   G KV  +  +  K + A +++GAD  + S D    DE++     +G    I+ 
Sbjct: 181 QYAKNVFGAKVIAVDINQDKLNLA-KKIGADVIINSGDVNPVDEIKKITGGLGVQSAIVC 239
Query: 113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMI 172
            V+ +      +  LK  GK+V +  P   + L    ++     V GSL+G   +  E  
Sbjct: 240 AVARI-AFEQAVASLKPMGKMVAVALPNTEMTLSVPTVVFDGVEVAGSLVGTRLDLAEAF 298
Query: 173 DFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
            F A+  ++  +     + +N  ++ +    +  R VID
Sbjct: 299 QFGAEGKVKPIVATRKLEEINDIIDEMKAGKIEGRMVID 337

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 1   MVADEHFVVRIPEGA-PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
           +VAD  + V++P+G  P++A++ + CAG+T Y  ++  G+ KPG                
Sbjct: 125 VVAD--YAVKVPDGLDPIEASS-ITCAGVTTYKAIKVSGV-KPGDWQVIFGAGGLGNLAI 180
Query: 60  KFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ---DEMQ---AAMGTMDGIID 112
           ++AK   G KV  +  +  K + A +++GAD  + S D    DE++     +G    I+ 
Sbjct: 181 QYAKNVFGAKVIAVDINQDKLNLA-KKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVC 239
Query: 113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMI 172
            V+ +      +  LK  GK+V +  P   + L    ++     V GSL+G   +  E  
Sbjct: 240 AVARI-AFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAGSLVGTRLDLAEAF 298
Query: 173 DFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
            F A+  ++  +     + +N  ++ +    +  R VID
Sbjct: 299 QFGAEGKVKPIVATRKLEEINDIIDEMKAGKIEGRMVID 337

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 21  APLLCAGITVYSPLR-----FYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTS 75
           APL  AGIT Y  ++      Y    PG                +  K M     +    
Sbjct: 164 APLADAGITAYRAVKKAARTLY----PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV 219
Query: 76  PSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIG---------- 125
             +K +  ERLGAD  + +R +D ++  M    G       V+  M  +G          
Sbjct: 220 KEEKLKLAERLGADHVVDAR-RDPVKQVMELTRG-----RGVNVAMDFVGSQATVDYTPY 273
Query: 126 LLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIE 185
           LL   G+L+++G   + L  P   +++      GSL+G   E  E++  A +  +R +++
Sbjct: 274 LLGRMGRLIIVGYGGE-LRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGKVRVEVD 332
Query: 186 VIPADYVNTAMERLAKADVRYRFVI 210
           +   D +N  +ERL K +V  R V+
Sbjct: 333 IHKLDEINDVLERLEKGEVLGRAVL 357

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	1e-144
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	1e-143
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	1e-135
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	1e-129
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	1e-129
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	1e-105
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	1e-103
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	1e-100
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	2e-47
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	2e-44
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	3e-43
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	9e-41
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	6e-22
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	5e-21
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	5e-21
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	6e-18
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	3e-17
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-16
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	3e-15
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	5e-15
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	2e-14
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	7e-14
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-13
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	3e-13
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	5e-13
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	5e-13
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	6e-13
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	7e-13
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-12
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	2e-12
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	2e-12
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	5e-12
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	2e-11
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-11
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	2e-11
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	5e-11
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	6e-11
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	7e-11
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	2e-10
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	6e-10
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	8e-10
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-09
3gms_A	340	Putative NADPH:quinone reductase; structural genom	1e-09
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	2e-09
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	4e-09
4eye_A	342	Probable oxidoreductase; structural genomics, niai	5e-09
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	5e-09
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	4e-08
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	3e-07
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	5e-07
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	6e-07
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	8e-07
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	2e-06
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	3e-06
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	4e-06
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	5e-06
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	2e-05
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-05
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	6e-05
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	8e-05
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-04
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	2e-04
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	4e-04
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	4e-04
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	4e-04
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	7e-04
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	7e-04

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score =  405 bits (1044), Expect = e-144
 Identities = 170/220 (77%), Positives = 194/220 (88%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVA+E +++R P+  PLD  APLLCAGITVYSPL+++GLD+PG H+G+VGLGGLGHVAVK
Sbjct: 146 MVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVK 205

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KVTVISTSPSKK EA++  GADSFLVSRDQ++MQAA GT+DGIIDTVSAVHPL
Sbjct: 206 FAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL 265

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL GLLKS GKL+L+GAPEKPLELPAF L+ GRKIV GS IGG+KETQEMIDFAAKHNI
Sbjct: 266 LPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNI 325

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
            ADIEVI  DY+NTAMERLAK DVRYRFVIDV NT+ +T 
Sbjct: 326 TADIEVISTDYLNTAMERLAKNDVRYRFVIDVGNTLAATK 365

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score =  401 bits (1033), Expect = e-143
 Identities = 109/218 (50%), Positives = 149/218 (68%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  + FVV+IPEG  ++  APLLCAG+TVYSPL  +GL +PG+  G++GLGG+GH+ VK
Sbjct: 139 TVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVK 198

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            AKAMG  VTVIS+S  K+ EA++ LGAD +++  DQ +M     ++D +IDTV   H L
Sbjct: 199 IAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHAL 258

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
            P + LLK  GKL+L+G    PL+     L+ GRK++ GS IG +KET+EM++F  +  +
Sbjct: 259 EPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGL 318

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
            + IEV+  DYVNTA ERL K DVRYRFV+DV  +   
Sbjct: 319 SSIIEVVKMDYVNTAFERLEKNDVRYRFVVDVEGSNLD 356

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score =  382 bits (984), Expect = e-135
 Identities = 108/219 (49%), Positives = 142/219 (64%), Gaps = 5/219 (2%)

Query: 1   MVADEHFVVRIPEG-APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAV 59
           +V  E +V+RI      L A APLLCAGIT YSPLR +    PG  VGVVG+GGLGH+ +
Sbjct: 153 IVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQA-GPGKKVGVVGIGGLGHMGI 211

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           K A AMG  V   +TS +K+  A + LGAD  + SR+ DEM A + + D I++TV+A H 
Sbjct: 212 KLAHAMGAHVVAFTTSEAKREAA-KALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN 270

Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELP-AFPLLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
           L     LLK  G + L+GAP  P + P  F L+  R+ + GS+IGG+ ETQEM+DF A+H
Sbjct: 271 LDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEH 330

Query: 179 NIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            I ADIE+I AD +N A ER+ + DV+YRFVID   T+ 
Sbjct: 331 GIVADIEMIRADQINEAYERMLRGDVKYRFVIDNR-TLT 368

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score =  368 bits (947), Expect = e-129
 Identities = 75/216 (34%), Positives = 118/216 (54%), Gaps = 7/216 (3%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +   EHFVV IPE  P    APLLC G+TVYSPL   G   PG  VG+VGLGG+G +   
Sbjct: 139 VRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGC-GPGKKVGIVGLGGIGSMGTL 197

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ-DEMQAAMGTMDGIIDTVSAVHP 119
            +KAMG +  VIS S  K+ +A+ ++GAD ++ + ++ D  +    T D I+   S++  
Sbjct: 198 ISKAMGAETYVISRSSRKREDAM-KMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD 256

Query: 120 L--MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK 177
           +    +   +K  G++V +  PE+   L   P       +  S +G +KE  +++   ++
Sbjct: 257 IDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSE 316

Query: 178 HNIRADIEVIPADY--VNTAMERLAKADVRYRFVID 211
            +I+  +E +P     V+ A ER+ K DVRYRF + 
Sbjct: 317 KDIKIWVETLPVGEAGVHEAFERMEKGDVRYRFTLV 352

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score =  366 bits (942), Expect = e-129
 Identities = 88/219 (40%), Positives = 127/219 (57%), Gaps = 10/219 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V DE++V+ + + APL+  APLLCAGIT YSPL+F  +   G  VGV G GGLG +AVK
Sbjct: 136 IVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKV-TKGTKVGVAGFGGLGSMAVK 194

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           +A AMG +V+V + +  KK +A+  +G   F     Q         +D II T+   + L
Sbjct: 195 YAVAMGAEVSVFARNEHKKQDAL-SMGVKHFYTDPKQ-----CKEELDFIISTIPTHYDL 248

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLE--LPAFPLLT-GRKIVGGSLIGGLKETQEMIDFAAK 177
              + LL   G L L+G P   +   L  F  +  G + V GSLIGG+KETQEM+DF+ K
Sbjct: 249 KDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFSIK 308

Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
           HNI  +I++I    ++TA   L     ++R+VID+  + 
Sbjct: 309 HNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSF 347

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  306 bits (785), Expect = e-105
 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 5/217 (2%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
             A   +VV+IP+    +  AP+ CAG+T Y  L+  G  KPG  V + G+GGLGHVAV+
Sbjct: 124 CRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGLGHVAVQ 182

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTMDGIIDTVSAV 117
           +AKAMG+ V  +     K   A + LGAD  +    +D    M+  +G +   + T  + 
Sbjct: 183 YAKAMGLNVVAVDIGDEKLELA-KELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSK 241

Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK 177
                    ++  G  VL+G P + + +P F  +     + GS++G  K+ QE + FAA+
Sbjct: 242 PAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAE 301

Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVAN 214
             ++  IEV P + +N   +R+ K  +  R V+ + +
Sbjct: 302 GKVKTIIEVQPLEKINEVFDRMLKGQINGRVVLTLED 338

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  299 bits (769), Expect = e-103
 Identities = 72/216 (33%), Positives = 117/216 (54%), Gaps = 5/216 (2%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +VAD ++V  +P+       AP+LCAG+TVY  L+     +PG  V + G+GGLGHVAV+
Sbjct: 126 VVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDT-RPGQWVVISGIGGLGHVAVQ 184

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTMDGIIDTVSAV 117
           +A+AMG++V  +    +K + A  RLGA+  + +RD D    +Q  +G   G++ T  + 
Sbjct: 185 YARAMGLRVAAVDIDDAKLNLA-RRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSP 243

Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK 177
                 IG+++  G + L G P      P F ++     + GS++G   + QE +DFAA 
Sbjct: 244 KAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLDFAAH 303

Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA 213
            +++A +     D VN    RL +  V  R V+D +
Sbjct: 304 GDVKATVSTAKLDDVNDVFGRLREGKVEGRVVLDFS 339

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  294 bits (755), Expect = e-100
 Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 9/220 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAV 59
             AD      IP+G  L   AP+LCAGITVY  L+   L   G  V + G  GGLG +AV
Sbjct: 129 ATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANL-MAGHWVAISGAAGGLGSLAV 187

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-----MQAAMGTMDGIIDTV 114
           ++AKAMG +V  I     K+      +G + F+    + +     ++A  G   G+I+  
Sbjct: 188 QYAKAMGYRVLGIDGGEGKEELF-RSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVS 246

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRKIVGGSLIGGLKETQEMID 173
            +   +      +++ G  VL+G P         F  +     + GS +G   +T+E +D
Sbjct: 247 VSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALD 306

Query: 174 FAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA 213
           F A+  +++ I+V+    +    E++ K  +  R+V+D +
Sbjct: 307 FFARGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTS 346

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  158 bits (401), Expect = 2e-47
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 7/217 (3%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR---FYGLDKPGMHVGVVGLGGLGHV 57
           M+      +           APL  AG T    +R    +        V V G+GGL   
Sbjct: 126 MLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVY 185

Query: 58  AVKFAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQDE--MQAAMGTM-DGIIDT 113
            ++  KA+   +T++  S SK   +    LGAD     +D +    +   G      ID 
Sbjct: 186 TIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDL 245

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMID 173
           V        L  LL  +G ++L+G   K + L AF      K + GS  G L + ++++ 
Sbjct: 246 VGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSNYGSLNDLEDVVR 305

Query: 174 FAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
            +    I+  I  +P D +N A   L +  V  R VI
Sbjct: 306 LSESGKIKPYIIKVPLDDINKAFTNLDEGRVDGRQVI 342

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  151 bits (383), Expect = 2e-44
 Identities = 60/219 (27%), Positives = 103/219 (47%), Gaps = 11/219 (5%)

Query: 1   MVADEHFVVRIPEGAPLDAT---APLLCAGITVYSPLRFYGLD-KPGMHVGVVGLGGLGH 56
           M      V+++P+    +     APL  AGIT Y  ++       PG +V +VG+GGLGH
Sbjct: 141 MRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGH 200

Query: 57  VAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQD--EMQAAMGTM--DGII 111
           +AV+  K M    V  +     K  +  ERLGAD  + +R     ++         +  +
Sbjct: 201 IAVQLLKVMTPATVIALDVKEEKL-KLAERLGADHVVDARRDPVKQVMELTRGRGVNVAM 259

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEM 171
           D V +   +     LL   G+L+++G   + L  P   +++      GSL+G   E  E+
Sbjct: 260 DFVGSQATVDYTPYLLGRMGRLIIVGYGGE-LRFPTIRVISSEVSFEGSLVGNYVELHEL 318

Query: 172 IDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
           +  A +  +R ++++   D +N  +ERL K +V  R V+
Sbjct: 319 VTLALQGKVRVEVDIHKLDEINDVLERLEKGEVLGRAVL 357

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  147 bits (374), Expect = 3e-43
 Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 10/218 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAV 59
           ++   +  +           APL C+GIT Y  +R   L  P   + VVG  GGLG +AV
Sbjct: 130 VIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAV 188

Query: 60  KFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDT 113
           + AKA+ G  +  +        EA +R GAD  + +  QD +           +D +ID 
Sbjct: 189 QIAKAVSGATIIGVDVREEAV-EAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 247

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMID 173
            ++   L      L  QGK V++G     L   A  +        GSL+G   +   ++ 
Sbjct: 248 NNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMR 307

Query: 174 FAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI 210
            A    ++  I + +  +  N A++ L       R V+
Sbjct: 308 LAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVL 345

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  141 bits (357), Expect = 9e-41
 Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 7/216 (3%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-KPGMHVGVVGLGGLGHVAV 59
           M+ D    +         A APL  AG+T Y  +        PG    V+G+GGLGHV +
Sbjct: 129 MIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGI 188

Query: 60  KFAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQ--DEMQAAMGTM--DGIIDTV 114
           +  +A+   +V  +     +       +GAD+ + S     D ++   G      + D V
Sbjct: 189 QILRAVSAARVIAVDLDDDRL-ALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFV 247

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDF 174
            A   +     ++   G + ++G          F ++     V     G   E  E++  
Sbjct: 248 GAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGFFMIPFGASVVTPYWGTRSELMEVVAL 307

Query: 175 AAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
           A    +    E    D    A  RL +  +R R V+
Sbjct: 308 ARAGRLDIHTETFTLDEGPAAYRRLREGSIRGRGVV 343

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 91.1 bits (227), Expect = 6e-22
 Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 18/216 (8%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           +  E  V+++ E   LD  A  +C+G T Y     Y     G  V + G G LG   V  
Sbjct: 155 LDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVI 214

Query: 62  AKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQD--EMQAAMGTM------DGIID 112
           A+++G   V VI+ SP++   A E +GAD  L  R+    E + A+  +      D I++
Sbjct: 215 ARSLGAENVIVIAGSPNRLKLA-EEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE 273

Query: 113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGR----KIVGGSLIGGLKET 168
                  L+    LL+  G   + G       +P F +            G  +      
Sbjct: 274 ATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVP-FKVYEWLVLKNATFKGIWVSDTSHF 332

Query: 169 QEMIDFAAKHNIRAD---IEVIPADYVNTAMERLAK 201
            + +   +++           +P    N A+E +  
Sbjct: 333 VKTVSITSRNYQLLSKLITHRLPLKEANKALELMES 368

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 88.4 bits (220), Expect = 5e-21
 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 9/208 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V  E + V  P+       + L CAG+T +  L   G  + G  V V G GG+    ++
Sbjct: 148 VVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQ 207

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVS 115
            AKA G +V V S+S  +K +    LGAD  +   ++D ++             I++   
Sbjct: 208 IAKATGAEVIVTSSSR-EKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG 266

Query: 116 AVHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTGRKIVGGSLIGGLKETQEMIDF 174
               L   +  +   G++ ++G  E      P  PLL    +V G  +G  +  ++++  
Sbjct: 267 GAG-LGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRALEDLVGA 325

Query: 175 AAKHNIRADI-EVIPADYVNTAMERLAK 201
             +  ++  I        V  A+  L +
Sbjct: 326 VDRLGLKPVIDMRYKFTEVPEALAHLDR 353

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 88.4 bits (220), Expect = 5e-21
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 10/221 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAV 59
           +V  E  +   P+    +  A +    +T +  +      +PG  V V+    G+   A+
Sbjct: 125 VVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAI 184

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTV 114
           + AK  G +V   + S  K     + LGAD  +     D  +       G     ++D  
Sbjct: 185 QIAKLFGARVIATAGSEDKL-RRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHT 243

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPE-KPLELPAFPLLTGRKIVGGSLIGGLKETQEMID 173
            A++    +I    + G++ + GA       LP   +   +  + GS +        ++ 
Sbjct: 244 GALY-FEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASKSRLFPILR 302

Query: 174 FAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA 213
           F  +  ++  + +V+P +        L +  V  + V+ V 
Sbjct: 303 FVEEGKLKPVVGQVLPLEAAAEGHRLLEERRVFGKVVLQVG 343

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 80.6 bits (199), Expect = 6e-18
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 29/239 (12%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPL--RFYGLDKPGMHVGVVGL-GGLGHV 57
            +   + ++  P+    +  A       T Y  L  R     K G +V + G  GGLG  
Sbjct: 185 ALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSY 244

Query: 58  AVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTM---------- 107
           A +FA A G     + +SP K  E    +GA++ +    +                    
Sbjct: 245 ATQFALAGGANPICVVSSPQKA-EICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFG 303

Query: 108 ------------DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR 154
                       D + +           + + +  G +    +      E     L    
Sbjct: 304 KRIRELTGGEDIDIVFEHPGRET-FGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSL 362

Query: 155 KIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV 212
           K + GS     +E  E     AK  I   + +V   +    A   + +   + +  +  
Sbjct: 363 KRIIGSHFANYREAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLC 421

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 78.7 bits (194), Expect = 3e-17
 Identities = 39/239 (16%), Positives = 65/239 (27%), Gaps = 29/239 (12%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPL--RFYGLDKPGMHVGVVGL-GGLGHV 57
            V     ++  P     +  A       T Y  L        K G  V + G  GGLG  
Sbjct: 177 GVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSY 236

Query: 58  AVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTM---------- 107
           A++F K  G     + +S  K+  AV  LG D  +   +                     
Sbjct: 237 AIQFVKNGGGIPVAVVSSAQKE-AAVRALGCDLVINRAELGITDDIADDPRRVVETGRKL 295

Query: 108 ------------DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR 154
                       D + +    V      + + +  G +V  G+            L    
Sbjct: 296 AKLVVEKAGREPDIVFEHTGRVT-FGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKL 354

Query: 155 KIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV 212
           K + GS     +E Q          +   +  V P      A   +  +    +  +  
Sbjct: 355 KKIVGSHGANHEEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGKVAVLC 413

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 32/213 (15%), Positives = 66/213 (30%), Gaps = 26/213 (12%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V +   V+ +P+    +  A L C  +T +       L      V +VG G + ++  +
Sbjct: 102 TVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAFEKIPL-TKQREVLIVGFGAVNNLLTQ 160

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
                G    V   S S       + G         Q   +        I D V++ +  
Sbjct: 161 MLNNAG--YVVDLVSASLSQALAAKRGVRHLYREPSQVTQK-----YFAIFDAVNSQN-A 212

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
             L+  LK+ G ++ +         PAF        +    +G L +  +  D+      
Sbjct: 213 AALVPSLKANGHIICIQDRIPAPIDPAFTRTISYHEI---ALGALHDFGDRQDWQILMQQ 269

Query: 181 RADI--------------EVIPADYVNTAMERL 199
              +              ++   + +  A++  
Sbjct: 270 GEALLTLIAQGKMEIAAPDIFRFEQMIEALDHS 302

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 7/214 (3%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAV 59
           + A    +++  E       A L  AG+T    L    + K G  V +    GG+GH+A+
Sbjct: 112 VCASPDTIIQKLEKLSFLQAASLPTAGLTALQALNQAEV-KQGDVVLIHAGAGGVGHLAI 170

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           + AK  G   TVI+T+  +    ++ LGA+  +   ++D + A    +D +ID V     
Sbjct: 171 QLAKQKGT--TVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-DV 227

Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHN 179
            +  I  LK  G +V +        +        R+  G      ++E   +    ++  
Sbjct: 228 GIQSIDCLKETGCIVSVPTITAGRVIEVAKQK-HRRAFGLLKQFNIEELHYLGKLVSEDK 286

Query: 180 IRADI-EVIPADYVNTAMERLAKADVRYRFVIDV 212
           +R +I  +       TA E L    VR + V  V
Sbjct: 287 LRIEISRIFQLSEAVTAHELLETGHVRGKLVFKV 320

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 71.9 bits (177), Expect = 5e-15
 Identities = 46/218 (21%), Positives = 84/218 (38%), Gaps = 16/218 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  E  + R+ + A L+    + C   + Y          PG    V GLG +G  A+ 
Sbjct: 154 TVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAII 213

Query: 61  FAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAM-----GTMDGIIDT 113
             K  G  ++  I  +  K  +A + LGA   L  R+ D+ +Q  +     G +D  +D 
Sbjct: 214 GCKIAGASRIIAIDINGEKFPKA-KALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 272

Query: 114 VSAVHPLMP-LIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQE-- 170
                 L   +   +   G   ++GA    + +P   ++ GR I  G+  GG K      
Sbjct: 273 AGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGRSIN-GTFFGGWKSVDSVP 331

Query: 171 -MIDFAAKHNIRADI---EVIPADYVNTAMERLAKADV 204
            ++          D+     +P + +N A++ + +   
Sbjct: 332 NLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKS 369

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 70.2 bits (173), Expect = 2e-14
 Identities = 44/217 (20%), Positives = 81/217 (37%), Gaps = 15/217 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            ++ E+  V++ +  P++   PL C   T            P       G G +G  A+ 
Sbjct: 149 ALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALL 208

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM----GTMDGIIDTVS 115
            AK  G   +  +    S+   A + LGA   + S+ QD + A      G ++  +++  
Sbjct: 209 AAKVCGASIIIAVDIVESRLELAKQ-LGATHVINSKTQDPVAAIKEITDGGVNFALESTG 267

Query: 116 AVHPLMPLIGLLKSQGKLVLLGAP--EKPLELPAFPLL-TGRKIVGGSLIGGLK---ETQ 169
           +   L   +  L   GK+ ++GAP      +     LL  G+ I+ G + G         
Sbjct: 268 SPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTIL-GVVEGSGSPKKFIP 326

Query: 170 EMIDFAAKHNIRAD--IEVIPADYVNTAMERLAKADV 204
           E++    +     D  ++    D +N A     K   
Sbjct: 327 ELVRLYQQGKFPFDQLVKFYAFDEINQAAIDSRKGIT 363

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 68.6 bits (168), Expect = 7e-14
 Identities = 38/226 (16%), Positives = 73/226 (32%), Gaps = 25/226 (11%)

Query: 1   MVADEHFVVRIPEGAPLDA--TAPLLCA---------GITVYSPLRFYGLDKPGMHVGVV 49
              D  ++V+IP+          PL                               V VV
Sbjct: 128 WYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVV 187

Query: 50  GLGGLGHVAVKFAKAMGVKVTVISTS--PSKKSEAVERLGADSFLVSRDQDEMQAAMGTM 107
           G G +G +     +  G++V + +       +   +E    + +  S   D+++ ++G  
Sbjct: 188 GTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKF 247

Query: 108 DGIIDTV-SAVHPLMPLIGLLKSQGKLVLLG---APEKPLELPAFPLLTGRKI-VGGSLI 162
           D IID   + V+ L  +I LL   G L L G   +   PL+      +      + G + 
Sbjct: 248 DVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVN 307

Query: 163 GGLKETQEMIDFAAKHNIRADIEV-------IPADYVNTAMERLAK 201
           G     Q+ +   A                 +  +     ++ L +
Sbjct: 308 GQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLRE 353

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 54/226 (23%), Positives = 88/226 (38%), Gaps = 18/226 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V ++  V +I   APLD    L C   T +         +PG    V GLG +G  AV 
Sbjct: 151 TVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVM 210

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAM-----GTMDGIIDT 113
              + G  ++  +  +P K  +A +  GA  F+   D  E +   +     G +D  ++ 
Sbjct: 211 GCHSAGAKRIIAVDLNPDKFEKA-KVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC 269

Query: 114 VSAVHPLMP-LIGLLKSQGKLVLLG-APEKPLELPAFPLLTGRKIVGGSLIGGLKETQEM 171
           V  V  +   L   LK  G  VL+G      +      L+ GR    GS+ GG K    +
Sbjct: 270 VGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWK-GSMFGGFKGKDGV 328

Query: 172 ---IDFAAKHNIRADI---EVIPADYVNTAMERLAKADVRYRFVID 211
              +       ++ D      +P + VN A++ +       R V+ 
Sbjct: 329 PKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLS 373

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 21/163 (12%)

Query: 1   MVADEHFVVRIPEGAPLD----ATAPLLCAGITVY------SPLRFYGLDKPGMHVGVV- 49
            + +E  V + P+   +      + PL   GIT Y        +     +  G  + ++ 
Sbjct: 103 QLINERLVAKAPKN--ISAEQAVSLPL--TGITAYETLFDVFGISRNRNENEGKTLLIIN 158

Query: 50  GLGGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQ---AAMG 105
           G GG+G +A + AKA G  + VI+T S ++  E  +++GAD  L  ++    Q     + 
Sbjct: 159 GAGGVGSIATQIAKAYG--LRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIE 216

Query: 106 TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF 148
            +D +  T +       +I L+K +G +  + A E   +L A 
Sbjct: 217 LVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFENDQDLNAL 259

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 66.1 bits (162), Expect = 5e-13
 Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 18/194 (9%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
            V     + + P+  P +      PL  A   V + L        G  V + G G LG +
Sbjct: 129 AVVPAQNIWKNPKSIPPEYATLQEPLGNA---VDTVLAG---PISGKSVLITGAGPLGLL 182

Query: 58  AVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----II 111
            +  AKA G   V V   S  ++  A +++GAD  +   ++D ++  M   DG      +
Sbjct: 183 GIAVAKASGAYPVIVSEPSDFRRELA-KKVGADYVINPFEEDVVKEVMDITDGNGVDVFL 241

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKI-VGGSLIGGLKET-Q 169
           +   A   L   +  +   G++ LLG     + +    L+  + + + G     L ET  
Sbjct: 242 EFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWY 301

Query: 170 EMIDFAAKHNIRAD 183
            +        +  D
Sbjct: 302 TVSRLLQSGKLNLD 315

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 65.7 bits (161), Expect = 5e-13
 Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 1   MVADEHFVVRIPEGAPLD--ATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHV 57
              D   +   P    +   +  PL    IT +  L      + G  V +  G GG+GHV
Sbjct: 109 AAVDARLLASKPAALTMRQASVLPL--VFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHV 166

Query: 58  AVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM---GTMDGIIDTV 114
           A++ A A G    V +T+     E V  LGA     SR+ ++  A        D + DT+
Sbjct: 167 AIQIALARG--ARVFATARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTL 224

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAP 139
                L      +K  G +V     
Sbjct: 225 GGPV-LDASFSAVKRFGHVVSCLGW 248

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 65.7 bits (161), Expect = 6e-13
 Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 21/229 (9%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  +  V +I   APLD    L C   T Y         +PG    V GLGG+G   + 
Sbjct: 149 TVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIM 208

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAM-----GTMDGIIDT 113
             K  G  ++  +  +  K + A +  GA   +  +D  + +Q  +     G +D   + 
Sbjct: 209 GCKVAGASRIIGVDINKDKFARA-KEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 267

Query: 114 VSAVHPLMPLIGLL-KSQGKLVLLG--APEKPLELPAFPLLTGRKIVGGSLIGGLKETQE 170
           +  V  +   +    K  G  V++G  A  + +    F L+TGR    G+  GG K  + 
Sbjct: 268 IGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWK-GTAFGGWKSVES 326

Query: 171 MIDFAAKHNIRADIEV-------IPADYVNTAMERLAKADVRYRFVIDV 212
           +    +++ +   I+V       +  D +N A E +       R V+ +
Sbjct: 327 VPKLVSEY-MSKKIKVDEFVTHNLSFDEINKAFELMHSGKS-IRTVVKI 373

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 65.7 bits (161), Expect = 7e-13
 Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 12/176 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V DE  V +I   +PL+    + C   T Y           G    V GLGG+G   + 
Sbjct: 150 TVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM------GTMDGIIDT 113
             KA G  ++  +  +  K ++A + +GA   +  +D  +    +      G +D   + 
Sbjct: 210 GCKAAGAARIIGVDINKDKFAKA-KEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 268

Query: 114 VSAVHPLMPLIGLL-KSQGKLVLLG--APEKPLELPAFPLLTGRKIVGGSLIGGLK 166
           +  +  ++  +    ++ G  V++G     + L +    LL+GR    G++ GG K
Sbjct: 269 IGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWK-GAIFGGFK 323

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 64.9 bits (159), Expect = 1e-12
 Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 18/219 (8%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  +  V +I   APL++   + C   T Y          PG    V GLGG+G  A+ 
Sbjct: 151 TVVADIAVAKIDPKAPLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIV 209

Query: 61  FAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAM-----GTMDGIIDT 113
             KA G  ++  + T   K  +A   LGA   L  +D D+ +   +     G +D  ++ 
Sbjct: 210 GCKAAGASRIIGVGTHKDKFPKA-IELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 268

Query: 114 VSAVHPL-MPLIGLLKSQGKLVLLG--APEKPLELPAFPLLTGRKIVGGSLIGGLKETQ- 169
              +  +   L       G  V+LG  +P + L L    LLTGR +  GS+ GG K  + 
Sbjct: 269 AGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLK-GSVFGGFKGEEV 327

Query: 170 -EMIDFAAKHNIRADI---EVIPADYVNTAMERLAKADV 204
             ++D   K  I  +      +  D +N A E L+    
Sbjct: 328 SRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQG 366

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 12/151 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYG----LDKPGMHVGVVG-LGGLG 55
           +V   + V   P+       A L    +T +S +   G     +  G  V ++G  GG+G
Sbjct: 138 VVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVG 197

Query: 56  HVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD--EMQAAMGTMDGIIDT 113
             A++  KA      V +      SE V +LGAD  +  +     E   ++   D I+D 
Sbjct: 198 TFAIQVMKAWD--AHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDN 255

Query: 114 VSAVHPLMPLIGLLKSQ--GKLVLLGAPEKP 142
           V            LK       V L  P   
Sbjct: 256 VGG-STETWAPDFLKKWSGATYVTLVTPFLL 285

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
              +  ++ +PEG   +  A    + +T Y  L+     +PG  V V    G LG  AV+
Sbjct: 86  AVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQ 144

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            A+AMG++V   ++ P K       LGA+      +  E   A G +D +++       +
Sbjct: 145 VARAMGLRVLAAASRPEKL-ALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKE--V 201

Query: 121 MPLIGLLKSQGKLVLLGAP--EKPLELPAFPLLTGRKIVGGS 160
              +GLL   G+LV +GA   E    +P   L+     V G 
Sbjct: 202 EESLGLLAHGGRLVYIGAAEGEVA-PIPPLRLMRRNLAVLGF 242

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 26/221 (11%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
           +V     V  +P   P++  A   P+      +++            +V ++G G +G +
Sbjct: 121 IVVKRKNVFALPTDMPIEDGAFIEPITVG---LHAFHL--AQGCENKNVIIIGAGTIGLL 175

Query: 58  AVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----II 111
           A++ A A+G   VT I  S  K + A +  GA     S +    Q      +      I+
Sbjct: 176 AIQCAVALGAKSVTAIDISSEKLALA-KSFGAMQTFNSSEMSAPQMQSVLRELRFNQLIL 234

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT----GRKIVG----GSLIG 163
           +T      +   + +     +L L+G   + L L +            ++G     S   
Sbjct: 235 ETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPW 294

Query: 164 GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAK 201
             +E +       +  +  +  I      +    A+  +A+
Sbjct: 295 PGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIAR 335

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 9/166 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
           +     ++  P+G      A L     TV++ L        G  V +  G  G+G  A++
Sbjct: 127 LLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQ 186

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGT-MDGIIDTVSA 116
            A+A G +V   + S  K  EA ERLGA   +  R +D    ++A  G  +D I+D + A
Sbjct: 187 LARAFGAEVYATAGSTGKC-EACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA 245

Query: 117 VHPLMPLIGLLKSQGKLVLLGAP--EKPLELPAFPLLTGRKIVGGS 160
            +     I  L   G L ++         ++   P++  R  V GS
Sbjct: 246 AY-FERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGS 290

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 23/169 (13%), Positives = 54/169 (31%), Gaps = 13/169 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV--GLGGLGHVA 58
            VA+    + + +    +  A ++   +T  +        +      V+  G   L  + 
Sbjct: 124 AVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVKQ-EGEKAF-VMTAGASQLCKLI 181

Query: 59  VKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDT 113
           +  AK  G +  V      +    ++ +GA   L  +  D        M        +D 
Sbjct: 182 IGLAKEEGFRPIVTVRRDEQI-ALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDA 240

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGA--PEKPLELPAFPLLTGRKIVGGS 160
           V+       +   +  + + ++ G   P+  +      L+   K + G 
Sbjct: 241 VTGPL-ASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGF 288

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 25/160 (15%), Positives = 43/160 (26%), Gaps = 21/160 (13%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV------------ 49
           V       +IP+G   +  A L     T    ++  GL  P                   
Sbjct: 112 VTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVY 171

Query: 50  -GLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ----AAM 104
            G      V ++  +  G     I+T      +  +  GA+     R  +  Q       
Sbjct: 172 GGSTATATVTMQMLRLSG--YIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTK 229

Query: 105 GTMDGIIDTVSAVHPLMPLIGLLKSQGKLV--LLGAPEKP 142
             +   +D ++ V         +   G     L   PE  
Sbjct: 230 NNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHA 269

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 39/233 (16%), Positives = 81/233 (34%), Gaps = 22/233 (9%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAV 59
            V  E  ++++P   PL + A L     T Y  L  +   +PG  V       G+G   +
Sbjct: 126 AVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVI 185

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVER---LGADSFLVSRDQDEMQAAMGTMDG-----II 111
           + A A+G++   +        +  +R   LGA+  +   +    +      D       +
Sbjct: 186 QIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLAL 245

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAP-EKPLELPAFPLLTGRKIVGGSLIGGLKETQ- 169
           + V        L+  L   G +V  G   ++P+      L+     + G  +   K+   
Sbjct: 246 NCVGG-KSSTELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHS 304

Query: 170 ---------EMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV 212
                     + D   +  + A     +P     +A+E   K  +  + ++ +
Sbjct: 305 PDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSKQILTM 357

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 59.9 bits (146), Expect = 6e-11
 Identities = 45/217 (20%), Positives = 77/217 (35%), Gaps = 23/217 (10%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
           ++        IP        A   PL C    ++         K G  V ++G G +G +
Sbjct: 143 VLVPRKQAFEIPLTLDPVHGAFCEPLACC---LHGVDL--SGIKAGSTVAILGGGVIGLL 197

Query: 58  AVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG------- 109
            V+ A+  G   V + +   +K+  A E +GA + +     D ++A  G +         
Sbjct: 198 TVQLARLAGATTVILSTRQATKRRLA-EEVGATATVDPSAGDVVEAIAGPVGLVPGGVDV 256

Query: 110 IIDTVSAVHPLMPLIGLLKSQGKLVLLG--APEKPLELPAFPLLTGRKIVGGSLIGGLKE 167
           +I+       +     L K+ G +V+LG     + +E+  F +L     V GS       
Sbjct: 257 VIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGS-FINPFV 315

Query: 168 TQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAK 201
            +   D  A   I  D  I   I  D     +   A 
Sbjct: 316 HRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAA 352

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 11/150 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPL-RFYGLDKPGMHVG-----VVGLGGL 54
            + DE  V R P+       A L    IT +        ++KP          V G GG+
Sbjct: 125 HLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGV 184

Query: 55  GHVAVKFAKAMGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQAA---MGTMDGI 110
           G +AV+ A+     +TVI+T S  +  E V+ LGA   +        + A   +G    +
Sbjct: 185 GSIAVQIARQRT-DLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFV 243

Query: 111 IDTVSAVHPLMPLIGLLKSQGKLVLLGAPE 140
             T         +  L+  QG+  L+  P 
Sbjct: 244 FSTTHTDKHAAEIADLIAPQGRFCLIDDPS 273

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 11/166 (6%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
           +A +H V ++PE       A +     T Y  L      K G  V V G  GG+G  A +
Sbjct: 130 LAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQ 189

Query: 61  FAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTV 114
            A+A G  + ++ T+ ++   + V + GA      R+ + +      +       II+ +
Sbjct: 190 IARAYG--LKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEML 247

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGS 160
           + V+ L   + LL   G+++++G+    +E+     +     + G 
Sbjct: 248 ANVN-LSKDLSLLSHGGRVIVVGSR-GTIEINPRDTMAKESSIIGV 291

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 56.8 bits (138), Expect = 6e-10
 Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 18/213 (8%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
           +V         P+  P +  A   P   A   V++          G  V + G G +G +
Sbjct: 125 VVVPAENAWVNPKDLPFEVAAILEPFGNA---VHTVYAG-SG-VSGKSVLITGAGPIGLM 179

Query: 58  AVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRD--QDEMQAAMGT-MDGIIDT 113
           A    +A G   + V   +P + + A             +   + ++   G+ ++ +++ 
Sbjct: 180 AAMVVRASGAGPILVSDPNPYRLAFA-RPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEF 238

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKI-VGGSLIGGLKET-QEM 171
                 +   +  L   G+  +LG P  P+       L  R I   G     L +T  + 
Sbjct: 239 SGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQG 298

Query: 172 IDFAAKHNIRAD--I-EVIPADYVNTAMERLAK 201
                   +     +   +P      A   LA 
Sbjct: 299 TALVYSGRVDLSPLLTHRLPLSRYREAFGLLAS 331

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 56.5 bits (137), Expect = 8e-10
 Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 12/168 (7%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
              E  ++ IPEG  L   A +  A +T +  L   G  + G +V +  GL G+G  A++
Sbjct: 122 TVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQ 181

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVS 115
             +  G    V + S  K  +  E+LGA +    + +D  +A +    G     I+D + 
Sbjct: 182 LTRMAGAIPLVTAGSQKKL-QMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIG 240

Query: 116 AVHPLMPLIGLLKSQGKLVLLGA---PEKPLELPAFPLLTGRKIVGGS 160
             +     +  L   G+ VL G     +    L +  LL  R  +  S
Sbjct: 241 GSY-WEKNVNCLALDGRWVLYGLMGGGDINGPLFS-KLLFKRGSLITS 286

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 39/164 (23%), Positives = 64/164 (39%), Gaps = 18/164 (10%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
            V    F  ++P+   L+  A   PL      V++  R     + G  V V+G G +G V
Sbjct: 129 YVHAADFCHKLPDNVSLEEGALLEPLSVG---VHACRR--AGVQLGTTVLVIGAGPIGLV 183

Query: 58  AVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV--SRDQDEMQAAM-------GTMD 108
           +V  AKA G  V   + SP +   A +  GAD  LV     ++E               +
Sbjct: 184 SVLAAKAYGAFVVCTARSPRRLEVA-KNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 242

Query: 109 GIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT 152
             ID       +   I + ++ G L+L+G   + + +P      
Sbjct: 243 VTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACA 286

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 12/167 (7%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR-FYGLDKPGMHVGVVG-LGGLGHVAV 59
                FVV IP+       A +    +T +        L +    + V      +GH+  
Sbjct: 104 KTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNL-QRNDVLLVNACGSAIGHLFA 162

Query: 60  KFAKAMGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDT 113
           + ++ +     +I+    +K +E + RLGA   + +      +  M   +G      ID+
Sbjct: 163 QLSQILN--FRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDS 220

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGS 160
           +        L   L+  G  + +G         A  +   +      
Sbjct: 221 IGG-PDGNELAFSLRPNGHFLTIGLLSGIQVNWAEIVTKAKVHANIF 266

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 55.3 bits (134), Expect = 2e-09
 Identities = 37/197 (18%), Positives = 65/197 (32%), Gaps = 26/197 (13%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
                FV +IP+       A      +T Y  L      + GM V V    GG+G    +
Sbjct: 102 CTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQ 161

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGT-MDGIIDTVSA 116
               +     V  T+ + K EA++       L  R+ D   E++      +D ++D +  
Sbjct: 162 LCSTVPNVT-VFGTASTFKHEAIKDSVTH--LFDRNADYVQEVKRISAEGVDIVLDCLCG 218

Query: 117 VHPLMPLIGLLKSQGKLVLLG-----------------APEKPLELPAFPLLTGRKIVGG 159
            +     + LLK  G  +L G                 +  +  ++    L    K++ G
Sbjct: 219 DN-TGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAG 277

Query: 160 SLIGGLKETQEMIDFAA 176
             +  L   Q       
Sbjct: 278 FSLLNLLFKQGRAGLIR 294

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 18/170 (10%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
              +  F  ++P+    +  A   PL      +++  R  G    G  V V G G +G V
Sbjct: 132 YKHNAAFCYKLPDNVTFEEGALIEPLSVG---IHACRR--GGVTLGHKVLVCGAGPIGMV 186

Query: 58  AVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-------GTMDG 109
            +  AKAMG  +V V   S ++ S+A + +GAD  L    +   + A           + 
Sbjct: 187 TLLVAKAMGAAQVVVTDLSATRLSKA-KEIGADLVLQISKESPQEIARKVEGQLGCKPEV 245

Query: 110 IIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT-GRKIVG 158
            I+   A   +   I   +S G LVL+G   +   +P          I G
Sbjct: 246 TIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKG 295

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 54.1 bits (131), Expect = 5e-09
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
                 ++  P          L+    T+Y      G  + G  V V+G  GG+G  A++
Sbjct: 119 AVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQ 178

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD 96
            AK MG KV  +    +  +E V+ +GAD  L   +
Sbjct: 179 IAKGMGAKVIAVVNRTA-ATEFVKSVGADIVLPLEE 213

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 38/225 (16%), Positives = 82/225 (36%), Gaps = 28/225 (12%)

Query: 1   MVADEHFVVRIPEGA-------PLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVG 50
           +  D  +   + E            A +   P   A     + +   G  +PG +V ++G
Sbjct: 165 VKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVA---YNAVIVRGGGIRPGDNVVILG 221

Query: 51  LGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
            G +G  AV   K  G  KV +   S  +++ A + LGAD  +    ++ ++A +   +G
Sbjct: 222 GGPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KELGADHVIDPTKENFVEAVLDYTNG 280

Query: 110 -----IIDTVSAVHPLMPLIGLLKSQGK-----LVLLGAPEKPLELPAFPLLT-GRKIVG 158
                 ++       + P I  +  + +     + ++   +  + L          +IVG
Sbjct: 281 LGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVG 340

Query: 159 GSLIGGLKETQEMIDFAAKH-NIRADI-EVIPADYVNTAMERLAK 201
                G      +I   A   ++   I + +  + +   ++RL  
Sbjct: 341 SQGHSGHGTFPRVISLMASGMDMTKIISKTVSMEEIPEYIKRLQT 385

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 34/174 (19%), Positives = 65/174 (37%), Gaps = 16/174 (9%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV--GLGGLGHVAV 59
           V        +P   P      LL +G T Y  L+  G    G  V +V    GG G  A+
Sbjct: 125 VVPASIATPVPSVKP--EYLTLLVSGTTAYISLKELGGLSEGKKV-LVTAAAGGTGQFAM 181

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGT-MDGIIDTVS 115
           + +K     V    +S  +KS  ++ LG D  +  + +     ++      +D + ++V 
Sbjct: 182 QLSKKAKCHVIGTCSSD-EKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVG 240

Query: 116 AVHPLMPLIGLLKSQGKLVLLGA-----PEKPLELPAFPLLTGRKIVGGSLIGG 164
                   +  L ++G+L+++G          L       L  + +   + + G
Sbjct: 241 GAM-FDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQG 293

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 31/232 (13%), Positives = 65/232 (28%), Gaps = 27/232 (11%)

Query: 3   ADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV--GLGGLGHVAVK 60
             +      P G  ++  A +    +T Y  L  Y    PG    +   G   +G  A +
Sbjct: 127 PAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQ 186

Query: 61  FAKAMGVKV-TVISTSPSK--KSEAVERLGADSFLVSRDQDEMQAAM----------GTM 107
             K +     +VI   P+      +++ LGA   +     +  +             G  
Sbjct: 187 IGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEA 246

Query: 108 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGRKIVGGSLIGGLK 166
              ++ V        +   L + G ++  G     P+ +P    +       G  +  L 
Sbjct: 247 KLALNCVGG-KSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELL 305

Query: 167 ET---------QEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRF 208
           +           ++I +  +  +          D      E         + 
Sbjct: 306 KNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKD 357

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 3/110 (2%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAV 59
                   + +PEGA     A      +T    +    L +    +        LG +  
Sbjct: 131 RCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMRL-EGHSALVHTAAASNLGQMLN 189

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
           +     G+K+  I     +  + ++  GA     +     MQ     +  
Sbjct: 190 QICLKDGIKLVNIVRKQEQA-DLLKAQGAVHVCNAASPTFMQDLTEALVS 238

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 48.0 bits (114), Expect = 6e-07
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 42  PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ 101
            G +V V+GLG +G    +   A+G KV V +      +   E +G + F       +  
Sbjct: 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAE-MGMEPF----HISKAA 208

Query: 102 AAMGTMDGIIDTV 114
             +  +D  I+T+
Sbjct: 209 QELRDVDVCINTI 221

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 31/198 (15%), Positives = 60/198 (30%), Gaps = 15/198 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATA--PLLCAGITVY-SPLRFYGLDKPGMHVGVVGLGGLGHV 57
             + E ++VRIP           P+      +  +       D       V+G G LG +
Sbjct: 128 FTSPEKYLVRIPRSQAELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLL 187

Query: 58  AVKFAKAMG---VKVTVISTS--PSKKSEAVERLGADSFLVSRD-QDEMQAAMGTMDGII 111
            +   K        +  +     P    + +E L A      +   +++      MD I 
Sbjct: 188 TLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIY 247

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAP-----EKPLELPAFPLLTGRKIVGGSLIGGLK 166
           +        +  +  L   G   LLG P     E         ++   K + GS+   ++
Sbjct: 248 EATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVE 307

Query: 167 ETQE-MIDFAAKHNIRAD 183
             +   + F        +
Sbjct: 308 HFEAATVTFTKLPKWFLE 325

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVK 60
                    +P     +  A     G+TVY  LR     KP          GG+G +A +
Sbjct: 100 NIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQ 159

Query: 61  FAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQD 98
           +AKA+G    +I T  +  K+++  + GA   +  R++D
Sbjct: 160 WAKALG--AKLIGTVGTAQKAQSALKAGAWQVINYREED 196

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 2    VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
            +  +H    +P    L+  A +     T Y  L   G  +PG  V +  G GG+G  A+ 
Sbjct: 1627 LLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIA 1686

Query: 61   FAKAMGVKVTVISTSPSKKSEAVER---LGADSFLVSRDQD 98
             A + G +V     S  K++    R   L    F  SRD  
Sbjct: 1687 IALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTS 1727

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 2   VADEHFVVRIPEGAPLD--ATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVA 58
           +     ++++P+   LD    A L+  G+T    L      KPG +V +    GG+GH+ 
Sbjct: 103 LYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIM 162

Query: 59  VKFAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQD 98
           V +A+ +G   TVI T  ++ K+E   +LG    +    QD
Sbjct: 163 VPWARHLG--ATVIGTVSTEEKAETARKLGCHHTINYSTQD 201

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
           V  E  +V++ +    +  A L+  G+TV   LR     KPG  +      GG+G +A +
Sbjct: 100 VLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQ 159

Query: 61  FAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQD 98
           +AKA+G    +I T  S  K+   + LGA   +    +D
Sbjct: 160 WAKALG--AKLIGTVSSPEKAAHAKALGAWETIDYSHED 196

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 24/167 (14%), Positives = 58/167 (34%), Gaps = 24/167 (14%)

Query: 1   MVADEHFVVRIP-----EGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLG 55
           +     +  +I       GA L+   PL    + +    R     + G  V + G G +G
Sbjct: 141 VNHPAVWCHKIGNMSYENGAMLE---PL---SVALAGLQRAG--VRLGDPVLICGAGPIG 192

Query: 56  HVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRD----QDEMQAAMGTMDG- 109
            + +  AKA G   + +      +   A + +  +      +    ++  +  + +  G 
Sbjct: 193 LITMLCAKAAGACPLVITDIDEGRLKFA-KEICPEVVTHKVERLSAEESAKKIVESFGGI 251

Query: 110 ----IIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT 152
                ++       +   I  +K  GK+ ++G  +  +++P      
Sbjct: 252 EPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASV 298

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 49/316 (15%), Positives = 83/316 (26%), Gaps = 124/316 (39%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR--FYGLDKPGMHVGVVGLGGLG-HVA 58
           V  ++ V R+                   Y  LR     L +P  +V + G+ G G    
Sbjct: 125 VFAKYNVSRLQP-----------------YLKLRQALLEL-RPAKNVLIDGVLGSGKTWV 166

Query: 59  V-------KFAKAMGVKV---TV------------------------------ISTSPSK 78
                   K    M  K+    +                               S    +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 79  KSEAVERL--------GADSFLVSRD-QD-EMQAAMG--------TMD-GIIDTVSA--- 116
                  L          +  LV  + Q+ +   A          T    + D +SA   
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 117 VHPLM--PLIGLLKSQGK-LVLLGAPEKPLELPA-----FPLLTGRKIVGGSLIGG-LKE 167
            H  +    + L   + K L+L     +P +LP       P          S+I   +++
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-------SIIAESIRD 339

Query: 168 TQEMIDF-------AAKHNIRADIEVI-PADY-------------VNTAMERLAK--ADV 204
                D             I + + V+ PA+Y              +     L+    DV
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 205 RYRFVIDVANTM--KS 218
               V+ V N +   S
Sbjct: 400 IKSDVMVVVNKLHKYS 415

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 6   HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-----KPGMHVGV-VGLGGLGHVAV 59
             VV IP+    +  A    A +T +     + L       PG  V +    GG+G  AV
Sbjct: 2   DLVVPIPDTLADNEAATFGVAYLTAW-----HSLCEVGRLSPGERVLIHSATGGVGMAAV 56

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
             AK +G ++   + S +K+ E + RLG +    SR  D     +   DG
Sbjct: 57  SIAKMIGARIYTTAGSDAKR-EMLSRLGVEYVGDSRSVDFADEILELTDG 105

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 2   VADEHFVVRIPEGAP---LDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHV 57
           ++ +  V+++P+G     L   A  L   +T  S        K G +V +    GG+G +
Sbjct: 105 ISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLI 164

Query: 58  AVKFAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQD 98
             +  K  G     I+ + +  K +  +  GA+  + +  +D
Sbjct: 165 LNQLLKMKG--AHTIAVASTDEKLKIAKEYGAEYLINASKED 204

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 18/105 (17%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-----KPGMHVGV-VGLGGLG 55
           VAD   V RIP G      A +    +T Y     Y L      +PG  + V    GG+G
Sbjct: 305 VADHRMVTRIPAGWSFARAASVPIVFLTAY-----YALVDLAGLRPGESLLVHSAAGGVG 359

Query: 56  HVAVKFAKAMGVKV--TVISTSPSKKSEAVERLGADSFLVSRDQD 98
             A++ A+ +G +V  T    S  K       L  +    SR  D
Sbjct: 360 MAAIQLARHLGAEVYATA---SEDKWQAV--ELSREHLASSRTCD 399

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score = 41.7 bits (99), Expect = 8e-05
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 35  RFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD 89
            F      G+ V V GLG +     K     G K+ V   + +  S AV   GAD
Sbjct: 165 AFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD 219

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 43  GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL 86
           G  + ++G G +G       K  G+KV  +S S  ++    +++
Sbjct: 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSG-RERAGFDQV 182

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 43  GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL 86
              VG++G G LG    +  +A G  +   S S  K    VE  
Sbjct: 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSR-KSWPGVESY 181

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 43  GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF 91
           G  + + G G +G      A A+G+ V  ++T+        E +   + 
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTAT 185

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 7/131 (5%)

Query: 41  KPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE 99
           K G  V V+G+G +G ++V  A  +G  ++  + +      +     GA   +  ++ D 
Sbjct: 165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCC-DIALEYGATDIINYKNGDI 223

Query: 100 MQAAMGTMDGI-----IDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGR 154
           ++  +   DG      +     VH     + ++K    +  +    +   +       G 
Sbjct: 224 VEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGV 283

Query: 155 KIVGGSLIGGL 165
            +    + GGL
Sbjct: 284 GMGHKHIHGGL 294

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 28  ITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG 87
              + P  F G D  G  +G++GLG +G    K AK   ++  ++  S ++K E    L 
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMR--ILYYSRTRKEEVERELN 192

Query: 88  A 88
           A
Sbjct: 193 A 193

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 42  PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ 101
            G  V V+GLG  G    +   A+G  V V + S +  +   E             DE++
Sbjct: 156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHT-----DELK 210

Query: 102 AAMGTMDGIIDTVSA 116
             +  +D  I+T+ +
Sbjct: 211 EHVKDIDICINTIPS 225

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 39  LDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ 97
           L   GM V VVG  G +    +   K  G +   +  +  +  E +   GA   +V+  +
Sbjct: 17  LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE-LRERGASDIVVANLE 75

Query: 98  DEMQAAMGTMDGIIDTVSA 116
           ++   A  ++D ++    +
Sbjct: 76  EDFSHAFASIDAVVFAAGS 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.98
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.98
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.98
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.98
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.98
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.97
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.97
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.97
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.97
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.97
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.97
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.97
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.95
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.93
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.32
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.31
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.3
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.28
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.09
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.06
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.03
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.98
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.89
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.84
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.68
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.66
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.63
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.57
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.57
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.5
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.47
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.39
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.39
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.38
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.34
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	98.26
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	98.23
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.19
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.15
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	98.14
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.14
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	98.13
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.13
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.11
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.1
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	98.1
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	98.09
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	98.09
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.07
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	98.06
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.06
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.03
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.03
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	98.02
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.02
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.01
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	98.01
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.0
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	98.0
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	98.0
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.99
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.99
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.98
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.97
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.96
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.95
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.95
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.95
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.95
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.94
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.94
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.94
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.94
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.93
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.93
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.92
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.92
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.92
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.92
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.91
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.91
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.91
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.91
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.91
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.9
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.9
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.9
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.9
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.89
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.89
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.89
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.89
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.89
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.89
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.89
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.89
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.88
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.88
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.88
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.87
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.87
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.87
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.86
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.86
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.86
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.86
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.85
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.85
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.85
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.85
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.85
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.85
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.84
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.84
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.84
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.84
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.84
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.84
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.84
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.84
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.84
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.83
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.83
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.83
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.83
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.82
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.82
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.82
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.82
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.82
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.82
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.82
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.81
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.81
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.81
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.81
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.81
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.8
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.78
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.77
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.77
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.77
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.77
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.76
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.76
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.76
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.76
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.76
1spx_A	278	Short-chain reductase family member (5L265); paral	97.75
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.75
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.75
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.75
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.74
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.74
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.74
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.74
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.74
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.73
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.73
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.73
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.73
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.72
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.72
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.72
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.72
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.72
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.72
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.71
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.71
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.71
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.71
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.71
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.71
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.7
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.7
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.7
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.7
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.7
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.69
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.69
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.69
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	97.69
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.69
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.69
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.69
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.69
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.68
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.68
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.68
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.68
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.68
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.68
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.68
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.68
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.68
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.68
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.67
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.67
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.67
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.67
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.67
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.66
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.66
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.66
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.66
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.66
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.66
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.66
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.66
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.66
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.65
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.65
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.64
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.64
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.64
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.64
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.64
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.63
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.63
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.63
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.62
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.62
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.62
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.61
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.61
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.61
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.61
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.6
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.6
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.6
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.59
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.59
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.59
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.58
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.58
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.58
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.58
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.58
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.57
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.57
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.57
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.56
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.56
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.55
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.55
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.55
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.55
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.55
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.55
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.54
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.54
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.54
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.54
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.54
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.53
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.53
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.52
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.52
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.52
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.52
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.51
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.51
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.51
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.51
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.51
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.51
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.5
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.5
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.5
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.49
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.49
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.49
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.49
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.49
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.48
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.48
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.48
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.48
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.48
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.48
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.48
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.48
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.47
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.47
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.46
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	97.46
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.46
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.46
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.46
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.46
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.45
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.45
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.45
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.45
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.45
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.45
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.45
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.45
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.44
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.43
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.43
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.43
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.42
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.42
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	97.42
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.42
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.42
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	97.42
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.41
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.4
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.4
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.4
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.4
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.4
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.4
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.39
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.39
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.39
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.39
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.39
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.38
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.38
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.38
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	97.38
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.37
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.37
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.37
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.36
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	97.36
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.36
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.36
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.36
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.36
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.36
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.35
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.35
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.35
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	97.35
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.35
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.34
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.34
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.34
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.34
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.34
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.34
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.34
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.34
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	97.33
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.33
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.33
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	97.33
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.33
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	97.32
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.32
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.32
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.3
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.3
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.29
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.29
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.29
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	97.29
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.29
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.29
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.28
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.28
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.27
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.27
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.26
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	97.26
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.26
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.25
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.25
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.24
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.24
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.24
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.24
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.24
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.24
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.24
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.23
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.23
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.21
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.21
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.21
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.2
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	97.19
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.19
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.19
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.19
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.18
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	97.18
4had_A	350	Probable oxidoreductase protein; structural genomi	97.18
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.18
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.18
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.18
3f4k_A	257	Putative methyltransferase; structural genomics, P	97.17
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	97.17
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.17
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.17
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.16
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.16
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.16
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.16
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.14
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	97.13
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.12
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.11
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.11
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.11
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.11
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.1
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.1
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.1
4e4y_A	244	Short chain dehydrogenase family protein; structur	97.1
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.09
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	97.09
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.09
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.08
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	97.08
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	97.07
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.07
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.06
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.06
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.05
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	97.05
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.05
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.05
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	97.04
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.04
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.03
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	97.02
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.02
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.02
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.01
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.01
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.0
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.0
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.0
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.99
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	96.99
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	96.99
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.98
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.97

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=3.2e-37  Score=246.38  Aligned_cols=212  Identities=52%  Similarity=0.910  Sum_probs=190.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCC-CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK-PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~-~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+.. ++ +|++|||+|+|++|++++|+|+.+|++|++++.++++++
T Consensus       140 ~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~  218 (357)
T 2cf5_A          140 VVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFG-LKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRE  218 (357)
T ss_dssp             EEEGGGEEECCSSCCHHHHTGGGTHHHHHHHHHHHTS-TTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHH
T ss_pred             EechhhEEECcCCCCHHHhhhhhhhHHHHHHHHHhcC-CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence            5788999999999999999999999999999998765 67 999999999999999999999999999999999988877


Q ss_pred             HHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCC-CCchhhhcCCeEEEE
Q 027664           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLE-LPAFPLLTGRKIVGG  159 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~  159 (220)
                      .+.+++|+++++++.+.+.+++.++++|++|||+|.+..++.++++++++|+++.+|....... ++.. ++.+++++.|
T Consensus       219 ~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g  297 (357)
T 2cf5_A          219 EALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITG  297 (357)
T ss_dssp             HHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEE
T ss_pred             HHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEE
Confidence            7755899999999888777777777999999999987678999999999999999998665444 5555 7889999999


Q ss_pred             EecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeCCc
Q 027664          160 SLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~  215 (220)
                      ++.+..++++++++++++|++++.+++|+++++++|++.+++++..||+|++++++
T Consensus       298 ~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~~  353 (357)
T 2cf5_A          298 SFIGSMKETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEKNDVRYRFVVDVEGS  353 (357)
T ss_dssp             CCSCCHHHHHHHHHHHHHTTCCCCEEEEEGGGHHHHHHHHHTTCSSSEEEEETTSC
T ss_pred             EccCCHHHHHHHHHHHHcCCCCCceEEEeHHHHHHHHHHHHCCCCceEEEEeCCcc
Confidence            99888889999999999999998789999999999999999988889999999765

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=1.2e-36  Score=243.76  Aligned_cols=213  Identities=78%  Similarity=1.223  Sum_probs=193.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCC-CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK-PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~-~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+.. ++ +|++|||+|+|++|++++|+|+.+|++|+++++++++++
T Consensus       147 ~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~al~~~~-~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~  225 (366)
T 1yqd_A          147 VANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFG-LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKE  225 (366)
T ss_dssp             EEEGGGCEECCTTSCTTTTGGGGTHHHHHHHHHHHTT-CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHH
T ss_pred             EEchhhEEECCCCCCHHHhhhhhhhHHHHHHHHHhcC-cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5788999999999999999999999999999998765 67 999999999999999999999999999999999998888


Q ss_pred             HHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEE
Q 027664           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGS  160 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  160 (220)
                      .+.+++|++.++|+.+.+.+++.++++|++|||+|....++.++++++++|+++.+|......+++...++.+++++.|+
T Consensus       226 ~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~  305 (366)
T 1yqd_A          226 EALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGS  305 (366)
T ss_dssp             HHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSCEEECHHHHHTTTCEEEEC
T ss_pred             HHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCCCCcCHHHHHhCCcEEEEe
Confidence            77668999999999887777777779999999999876689999999999999999987655567777888999999999


Q ss_pred             ecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeCCc
Q 027664          161 LIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       161 ~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~  215 (220)
                      +.+..++++++++++++|++++.+++|+|+++++|++.+++++..||+|++++++
T Consensus       306 ~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~~~  360 (366)
T 1yqd_A          306 GIGGMKETQEMIDFAAKHNITADIEVISTDYLNTAMERLAKNDVRYRFVIDVGNT  360 (366)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCCCCEEEECGGGHHHHHHHHHTTCCSSEEEECHHHH
T ss_pred             cCCCHHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHHHHHcCCcceEEEEEcccc
Confidence            8888889999999999999998889999999999999999988889999998654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-36  Score=243.10  Aligned_cols=211  Identities=50%  Similarity=0.818  Sum_probs=186.9

Q ss_pred             cccccceEeCCCC-CCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEG-APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~-~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|++ +|+++||++++++.|||+++.+. .+++|++|||+|+|++|++++|+|+.+|++|++++.++++++
T Consensus       154 ~v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~  232 (369)
T 1uuf_A          154 VVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHW-QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKRE  232 (369)
T ss_dssp             EEEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             EEcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5788999999999 99999999999999999999886 589999999999999999999999999999999999988776


Q ss_pred             HHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCC-CCCchhhhcCCeEEEE
Q 027664           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTGRKIVGG  159 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~~  159 (220)
                      .+ +++|++.++|+.+.+.++++.+++|++|||+|.+..++.++++++++|+++.+|...+.. +++...++.+++++.|
T Consensus       233 ~a-~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g  311 (369)
T 1uuf_A          233 AA-KALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAG  311 (369)
T ss_dssp             HH-HHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEE
T ss_pred             HH-HHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEE
Confidence            66 679999999998876666666799999999998767899999999999999999876554 6777778899999999


Q ss_pred             EecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          160 SLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       160 ~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      ++....++++++++++++|++++.+++|+|+++++|++.+++++..||+|+++++
T Consensus       312 ~~~~~~~~~~~~~~l~~~g~i~~~i~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  366 (369)
T 1uuf_A          312 SMIGGIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVIDNRT  366 (369)
T ss_dssp             CCSCCHHHHHHHHHHHHHHTCCCCEEEECGGGHHHHHHHHHTTCSSSEEEEEGGG
T ss_pred             eecCCHHHHHHHHHHHHhCCCCcceEEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            9888888999999999999999888889999999999999988878999999865

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=9.7e-37  Score=242.88  Aligned_cols=208  Identities=42%  Similarity=0.727  Sum_probs=186.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+. ++++|++|||+|+|++|++++|+|+.+|++|++++.++++++.
T Consensus       137 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~  215 (348)
T 3two_A          137 VVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFS-KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQD  215 (348)
T ss_dssp             EEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHHT-TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHH
T ss_pred             EechhhEEECCCCCCHHHhhhhhhhHHHHHHHHHhc-CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            578899999999999999999999999999999877 5899999999999999999999999999999999999888765


Q ss_pred             HHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC-CCCC-CCchhhh-cCCeEEE
Q 027664           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KPLE-LPAFPLL-TGRKIVG  158 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~-~~~~~~~-~~~~~~~  158 (220)
                      + +++|++.++  .+.+.+   ..++|++|||+|....++.++++++++|+++.+|... .... ++...++ .+++++.
T Consensus       216 ~-~~lGa~~v~--~~~~~~---~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~  289 (348)
T 3two_A          216 A-LSMGVKHFY--TDPKQC---KEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVY  289 (348)
T ss_dssp             H-HHTTCSEEE--SSGGGC---CSCEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEE
T ss_pred             H-HhcCCCeec--CCHHHH---hcCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEE
Confidence            5 789999998  333322   2389999999999877999999999999999999876 5555 6667777 9999999


Q ss_pred             EEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeCCcc
Q 027664          159 GSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~~  216 (220)
                      |++.++..+++++++++++|++++.+++|+++++++|++.+.+++..||+|++++++.
T Consensus       290 g~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvVi~~~~~~  347 (348)
T 3two_A          290 GSLIGGIKETQEMVDFSIKHNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSF  347 (348)
T ss_dssp             ECCSCCHHHHHHHHHHHHHTTCCCCEEEECGGGHHHHHHHHHTTCCCSEEEEEGGGCC
T ss_pred             EEecCCHHHHHHHHHHHHhCCCCceEEEEEHHHHHHHHHHHHcCCCceEEEEecCCcC
Confidence            9999999999999999999999997799999999999999999998899999998653

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=1.2e-36  Score=241.59  Aligned_cols=211  Identities=34%  Similarity=0.593  Sum_probs=190.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++|+++||++++++.|||+++... .+++|++|||+|+|++|++++|+|+++|++|++++.++++++.
T Consensus       127 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~  205 (340)
T 3s2e_A          127 VADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVT-DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNL  205 (340)
T ss_dssp             EECTTTSEECCTTSCHHHHGGGGTHHHHHHHHHHTT-TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             EechHHEEECCCCCCHHHhhcccchhHHHHHHHHHc-CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            578999999999999999999999999999999765 5899999999999999999999999999999999999887765


Q ss_pred             HHHHcCCCEEEcCCCHH---HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEE
Q 027664           82 AVERLGADSFLVSRDQD---EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVG  158 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~---~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  158 (220)
                      + +++|+++++|+.+.+   .+.+..+++|++||++|....++.++++++++|+++.+|...+..+++...++.+++++.
T Consensus       206 ~-~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~  284 (340)
T 3s2e_A          206 A-RRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIR  284 (340)
T ss_dssp             H-HHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCSSEEEEEHHHHHHTTCEEE
T ss_pred             H-HHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCCCCCCCCHHHHHhCCeEEE
Confidence            5 789999999987744   344434589999999998778999999999999999999877666777778889999999


Q ss_pred             EEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          159 GSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      |++..+.++++++++++++|++++.+++|+|+++++|++.+++++..||+|+++++
T Consensus       285 g~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~  340 (340)
T 3s2e_A          285 GSIVGTRSDLQESLDFAAHGDVKATVSTAKLDDVNDVFGRLREGKVEGRVVLDFSR  340 (340)
T ss_dssp             ECCSCCHHHHHHHHHHHHTTSCCCCEEEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred             EEecCCHHHHHHHHHHHHhCCCCceEEEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            99999999999999999999999888889999999999999999989999999864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=2e-36  Score=242.06  Aligned_cols=212  Identities=35%  Similarity=0.549  Sum_probs=188.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++|+++||++++.+.|||+++.+. ++++|++|||+|+|++|++++|+|+++|++|++++.++++++.
T Consensus       140 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~  218 (360)
T 1piw_A          140 RVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRN-GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRED  218 (360)
T ss_dssp             EEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHHT-TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHH
T ss_pred             EEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHc-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            578899999999999999999999999999999884 5899999999999999999999999999999999998887766


Q ss_pred             HHHHcCCCEEEcCCCH-HHHHHhcCCccEEEEcCCC--cccHHHHHhccccCCEEEEeCCCCCCC-CCCchhhhcCCeEE
Q 027664           82 AVERLGADSFLVSRDQ-DEMQAAMGTMDGIIDTVSA--VHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTGRKIV  157 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~-~~~~~~~~~~d~v~d~~g~--~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~  157 (220)
                      + +++|+++++|+.+. +..+++.+++|++|||+|.  ...++.++++++++|+++.+|.... . .++...++.+++++
T Consensus       219 ~-~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i  296 (360)
T 1piw_A          219 A-MKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSI  296 (360)
T ss_dssp             H-HHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGCBSCEE
T ss_pred             H-HHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHhCCeEE
Confidence            6 67999999998765 5555555689999999998  5578999999999999999998665 4 56666788899999


Q ss_pred             EEEecCCHHHHHHHHHHHHcCCCccceEEeeccc--HHHHHHHHHcCCCceeEEEEeCCcc
Q 027664          158 GGSLIGGLKETQEMIDFAAKHNIRADIEVIPADY--VNTAMERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       158 ~~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~--~~~a~~~~~~~~~~gk~vv~~~~~~  216 (220)
                      .|++.++.++++++++++++|++++.+++|++++  +++|++.+++++..||+|++++++.
T Consensus       297 ~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~~~~  357 (360)
T 1piw_A          297 SYSALGSIKELNQLLKLVSEKDIKIWVETLPVGEAGVHEAFERMEKGDVRYRFTLVGYDKE  357 (360)
T ss_dssp             EECCCCCHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHHHHTCCSSEEEEECCHHH
T ss_pred             EEEecCCHHHHHHHHHHHHhCCCcceEEEEeccHhHHHHHHHHHHCCCCceEEEEecCccc
Confidence            9998888899999999999999998889999999  9999999998887899999997653

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=4.6e-36  Score=239.03  Aligned_cols=211  Identities=25%  Similarity=0.458  Sum_probs=189.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++++.|+|++++... +++|++|||+|+|++|.+++|+++.. |++|++++.++++++
T Consensus       124 ~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~  202 (348)
T 4eez_A          124 IVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSG-VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLN  202 (348)
T ss_dssp             EEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHH
T ss_pred             cccccceeecCCCCCHHHHhhcccceeeEEeeecccC-CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhh
Confidence            5788999999999999999999999999999998766 79999999999999999999999876 569999999987765


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCe
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRK  155 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      . ++++|++.++|+.+.+   .+++.++  ++|.++|++++...+..++++++++|+++.+|......+++...++.+++
T Consensus       203 ~-~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  281 (348)
T 4eez_A          203 L-AKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGV  281 (348)
T ss_dssp             H-HHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECHHHHHHSCC
T ss_pred             h-hhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCCceEEEEeccCCCCccCHHHHHhCCe
Confidence            4 4789999999998754   4556665  79999999999888999999999999999999877777888889999999


Q ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          156 IVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      ++.|++.+++.+++++++++++|++++.+++|+|+++++|++.+++++..||+||+|++
T Consensus       282 ~i~gs~~~~~~~~~~~~~l~~~g~i~p~~~~~~l~~~~~A~~~l~~g~~~GKvVl~~sk  340 (348)
T 4eez_A          282 EVAGSLVGTRLDLAEAFQFGAEGKVKPIVATRKLEEINDIIDEMKAGKIEGRMVIDFTK  340 (348)
T ss_dssp             EEEECCSCCHHHHHHHHHHHHTTSCCCCEEEECGGGHHHHHHHHHTTCCSSEEEEECC-
T ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCEEEEEEEeHHHHHHHHHHHHCCCCccEEEEEccc
Confidence            99999999999999999999999999877999999999999999999999999999974

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=9.2e-36  Score=238.41  Aligned_cols=208  Identities=25%  Similarity=0.340  Sum_probs=186.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+...+++|++|||+|+|++|++++|+|+..|++|++++.++++++.
T Consensus       149 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~  228 (363)
T 3uog_A          149 VLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDR  228 (363)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             EechHHeEECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHH
Confidence            57889999999999999999999999999999976677899999999999999999999999999999999999877766


Q ss_pred             HHHHcCCCEEEcCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCCe
Q 027664           82 AVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRK  155 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~  155 (220)
                      + +++|++.++|....   +.+++.++  ++|++|||+|.. .+..++++++++|+++.+|...+. .+++...++.+++
T Consensus       229 ~-~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~  306 (363)
T 3uog_A          229 A-FALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGA-GLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSP  306 (363)
T ss_dssp             H-HHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETTSS-CHHHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHTCC
T ss_pred             H-HHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCChH-HHHHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhCCc
Confidence            5 78999999985432   34555554  899999999965 799999999999999999987654 6777778899999


Q ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          156 IVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++.|++....++++++++++++|++++.+ ++|+|+++++|++.+++++ .||+|+++
T Consensus       307 ~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~-~gKvvi~~  363 (363)
T 3uog_A          307 VVQGISVGHRRALEDLVGAVDRLGLKPVIDMRYKFTEVPEALAHLDRGP-FGKVVIEF  363 (363)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHTCCCCEEEEEEGGGHHHHHHTGGGCC-SBEEEEEC
T ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCC-CccEEEeC
Confidence            99999998899999999999999999888 8999999999999999998 89999975

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.4e-35  Score=237.08  Aligned_cols=207  Identities=28%  Similarity=0.449  Sum_probs=184.0

Q ss_pred             cccccceEeCCCCCCccccc---cccchhhhhhhHHHhh-cCCCCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCc
Q 027664            2 VADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSP   76 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa---~~~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~   76 (220)
                      ++|++.++++|+++|+++||   ++++++.|||+++.+. .++++|++|||+|+|++|++++|+|+++ |++|+++++++
T Consensus       142 ~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~  221 (359)
T 1h2b_A          142 RTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE  221 (359)
T ss_dssp             EECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            57889999999999999999   8999999999999884 5689999999999999999999999999 99999999988


Q ss_pred             cchHHHHHHcCCCEEEcCCCH--HHHHHhcC--CccEEEEcCCCcc--cHHHHHhccccCCEEEEeCCCCCCCCCCchhh
Q 027664           77 SKKSEAVERLGADSFLVSRDQ--DEMQAAMG--TMDGIIDTVSAVH--PLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL  150 (220)
Q Consensus        77 ~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~--~~d~v~d~~g~~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  150 (220)
                      ++++.+ +++|+++++|+.+.  +.++++++  ++|++|||+|.+.  .++.++++  ++|+++.+|...+. +++...+
T Consensus       222 ~~~~~~-~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~-~~~~~~~  297 (359)
T 1h2b_A          222 EKLKLA-ERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGEL-RFPTIRV  297 (359)
T ss_dssp             HHHHHH-HHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSCC-CCCHHHH
T ss_pred             HHHHHH-HHhCCCEEEeccchHHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCCC-CCCHHHH
Confidence            777665 78999999998775  45556664  7999999999875  67888887  99999999986655 6777778


Q ss_pred             hcCCeEEEEEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          151 LTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +.+++++.|++....++++++++++++|++++.+++|+|+++++|++.+++++..||+|+++
T Consensus       298 ~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~l~~~~~A~~~~~~~~~~gKvvv~~  359 (359)
T 1h2b_A          298 ISSEVSFEGSLVGNYVELHELVTLALQGKVRVEVDIHKLDEINDVLERLEKGEVLGRAVLIP  359 (359)
T ss_dssp             HHTTCEEEECCSCCHHHHHHHHHHHHTTSCCCCEEEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             HhCCcEEEEecCCCHHHHHHHHHHHHcCCCcceEEEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence            89999999998888899999999999999998779999999999999999988789999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1.4e-35  Score=235.29  Aligned_cols=211  Identities=32%  Similarity=0.570  Sum_probs=187.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++|+++||++++.+.|||+++.+. .+++|++|||+|+|++|++++|+|+..|++|+++++++++++.
T Consensus       125 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~  203 (339)
T 1rjw_A          125 RAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVT-GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLEL  203 (339)
T ss_dssp             EEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHHH-TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             EechHHEEECCCCCCHHHhhhhhhhHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            578899999999999999999999999999999887 4899999999999889999999999999999999999877766


Q ss_pred             HHHHcCCCEEEcCCCHH---HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEE
Q 027664           82 AVERLGADSFLVSRDQD---EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVG  158 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~---~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  158 (220)
                      + +++|++.++|+.+.+   .+.+.++++|++|||+|....++.++++++++|+++.+|...+..+++...++.+++++.
T Consensus       204 ~-~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~  282 (339)
T 1rjw_A          204 A-KELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKII  282 (339)
T ss_dssp             H-HHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEE
T ss_pred             H-HHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCCccCHHHHHhCCcEEE
Confidence            5 689999999887543   344444689999999998667899999999999999999876555666677888999999


Q ss_pred             EEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          159 GSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      |++....++++++++++++|++++.+++|+|+++++|++.+++++..||+|+++++
T Consensus       283 g~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  338 (339)
T 1rjw_A          283 GSIVGTRKDLQEALQFAAEGKVKTIIEVQPLEKINEVFDRMLKGQINGRVVLTLED  338 (339)
T ss_dssp             ECCSCCHHHHHHHHHHHHTTSCCCCEEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             EeccCCHHHHHHHHHHHHcCCCCccEEEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            99888889999999999999999877899999999999999988878999999864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=4.1e-35  Score=233.28  Aligned_cols=208  Identities=24%  Similarity=0.319  Sum_probs=184.7

Q ss_pred             ccc-ccceEeCCCCCCccccccccchhhhhhhHHHh-hcCCCCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccc
Q 027664            2 VAD-EHFVVRIPEGAPLDATAPLLCAGITVYSPLRF-YGLDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSK   78 (220)
Q Consensus         2 ~v~-~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~   78 (220)
                      ++| ++.++++|+ +|+++||++++++.|||+++.+ ...+++|++|+|+|+|++|++++|+|++. |++|++++.++++
T Consensus       130 ~v~~~~~~~~~p~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~  208 (345)
T 3jv7_A          130 IVDSARHLVPIGD-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDR  208 (345)
T ss_dssp             EESCGGGEEECTT-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHH
T ss_pred             EecchhceEeCCC-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            456 899999999 9999999999999999999998 44589999999999999999999999998 5699999999877


Q ss_pred             hHHHHHHcCCCEEEcCCC--HHHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcC
Q 027664           79 KSEAVERLGADSFLVSRD--QDEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTG  153 (220)
Q Consensus        79 ~~~~~~~~g~~~~~~~~~--~~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~  153 (220)
                      ++.+ +++|++.++++.+  .+.+++.++  ++|++|||+|.+..++.++++++++|+++.+|...+ ..+++. .++.+
T Consensus       209 ~~~~-~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~  286 (345)
T 3jv7_A          209 LALA-REVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPF  286 (345)
T ss_dssp             HHHH-HHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST-TTSCT
T ss_pred             HHHH-HHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhC
Confidence            7655 7899999998876  234556654  899999999998679999999999999999998765 455564 77889


Q ss_pred             CeEEEEEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          154 RKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++++.+++..+.++++++++++++|++++.+++|+++++++||+.+.+++..||+|+++
T Consensus       287 ~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          287 GASVVTPYWGTRSELMEVVALARAGRLDIHTETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             TCEEECCCSCCHHHHHHHHHHHHTTCCCCCEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             CCEEEEEecCCHHHHHHHHHHHHcCCCceEEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence            99999999999999999999999999998669999999999999999999999999864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=3e-35  Score=233.97  Aligned_cols=208  Identities=26%  Similarity=0.323  Sum_probs=170.4

Q ss_pred             ccc-ccceEeCCCCCCccccccccchhhhhhhHHHhh----cCCCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeC
Q 027664            2 VAD-EHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY----GLDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVIST   74 (220)
Q Consensus         2 ~v~-~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~----~~~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~   74 (220)
                      ++| ++.++++ +++|+++||++++++.|||+++...    .++ +|++|||+|+|++|++++|+|+++  |++|++++.
T Consensus       127 ~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~  204 (344)
T 2h6e_A          127 LVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISR  204 (344)
T ss_dssp             EESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECS
T ss_pred             EecCcccEEEe-CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeC
Confidence            567 8999999 9999999999999999999999887    258 999999999999999999999999  999999998


Q ss_pred             CccchHHHHHHcCCCEEEcCCC-HHHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhh
Q 027664           75 SPSKKSEAVERLGADSFLVSRD-QDEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  151 (220)
                      ++++++.+ +++|+++++|+.+ .+.++++++  ++|++|||+|....++.++++++++|+++.+|...+..+++...++
T Consensus       205 ~~~~~~~~-~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~  283 (344)
T 2h6e_A          205 SKKHRDFA-LELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTA  283 (344)
T ss_dssp             CHHHHHHH-HHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHH
T ss_pred             CHHHHHHH-HHhCCCEEeccccchHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCCCcccCHHHHh
Confidence            88776655 6899999998876 555666653  7999999999876789999999999999999987666677777888


Q ss_pred             cCCeEEEEEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          152 TGRKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .+++++.|++....++++++++++++|++++.+++|+|+++++|++.+++++..||+|+++
T Consensus       284 ~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~i~~~~l~~~~~A~~~~~~~~~~gKvvl~~  344 (344)
T 2h6e_A          284 VWNKKLLGSNYGSLNDLEDVVRLSESGKIKPYIIKVPLDDINKAFTNLDEGRVDGRQVITP  344 (344)
T ss_dssp             HTTCEEEECCSCCHHHHHHHHHHHHTTSSCCCEEEECC----------------CEEEECC
T ss_pred             hCCcEEEEEecCCHHHHHHHHHHHHcCCCCcceEEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence            9999999998888899999999999999998779999999999999999888789999864

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=5.1e-34  Score=229.40  Aligned_cols=208  Identities=20%  Similarity=0.336  Sum_probs=177.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+...+++|++|||+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       155 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  234 (376)
T 1e3i_A          155 VVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFP  234 (376)
T ss_dssp             EEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             EeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            578899999999999999999999999999998776678999999999999999999999999999 8999998887776


Q ss_pred             HHHHHcCCCEEEcCCC--H---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCCCCCCCchhhhcC
Q 027664           81 EAVERLGADSFLVSRD--Q---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKPLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~--~---~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~  153 (220)
                      .+ +++|+++++|+.+  .   +.+++.++ ++|+||||+|....++.++++++++ |+++.+|......++++..++.+
T Consensus       235 ~a-~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~  313 (376)
T 1e3i_A          235 KA-KALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILG  313 (376)
T ss_dssp             HH-HHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHTT
T ss_pred             HH-HHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCCccccCHHHhhcc
Confidence            55 7899999998763  2   34555554 8999999999866789999999999 99999998444456666777778


Q ss_pred             CeEEEEEecC---CHHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          154 RKIVGGSLIG---GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~~~~~~~~---~~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      + ++.|++..   ..++++++++++++|++++  .+ ++|+|+++++|++.+++++ .+|+|+++
T Consensus       314 ~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~-~~Kvvi~~  376 (376)
T 1e3i_A          314 R-SINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGK-SIRTILTF  376 (376)
T ss_dssp             C-EEEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTC-CSEEEEEC
T ss_pred             C-eEEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCC-cceEEEeC
Confidence            8 99998653   2568999999999999985  35 8999999999999998877 47999874

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=1.8e-34  Score=237.18  Aligned_cols=212  Identities=18%  Similarity=0.191  Sum_probs=187.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhh--cCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~   78 (220)
                      ++|+++++++|+++|+++||++++.+.|||+++...  ..+++|++|||+|+ |++|++++|+|+..|++|++++.++++
T Consensus       186 ~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~  265 (456)
T 3krt_A          186 LVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQK  265 (456)
T ss_dssp             EEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             EechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            578899999999999999999999999999998654  56899999999998 999999999999999999999988777


Q ss_pred             hHHHHHHcCCCEEEcCCCH--------------------HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664           79 KSEAVERLGADSFLVSRDQ--------------------DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus        79 ~~~~~~~~g~~~~~~~~~~--------------------~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      ++.+ +++|++.++++.+.                    +.+++.++  ++|+||||+|.. .+..++++++++|+++.+
T Consensus       266 ~~~~-~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~-~~~~~~~~l~~~G~iv~~  343 (456)
T 3krt_A          266 AEIC-RAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRE-TFGASVFVTRKGGTITTC  343 (456)
T ss_dssp             HHHH-HHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHH-HHHHHHHHEEEEEEEEES
T ss_pred             HHHH-HhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCch-hHHHHHHHhhCCcEEEEE
Confidence            6655 78999999988763                    34555554  899999999985 799999999999999999


Q ss_pred             CCCCCC-CCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          137 GAPEKP-LELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       137 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      |...+. .+++...++.+++++.|++.....++.++++++++|++++.+ ++|+|+++++|++.+.+++..||+|+.+.+
T Consensus       344 G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~eA~~~l~~~~~~GKvvv~~~~  423 (456)
T 3krt_A          344 ASTSGYMHEYDNRYLWMSLKRIIGSHFANYREAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLCLA  423 (456)
T ss_dssp             CCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEESSC
T ss_pred             ecCCCcccccCHHHHHhcCeEEEEeccCCHHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence            987653 456667788899999999998888899999999999999888 899999999999999999999999998865


Q ss_pred             c
Q 027664          215 T  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       424 ~  424 (456)
T 3krt_A          424 P  424 (456)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=3.8e-34  Score=227.72  Aligned_cols=212  Identities=17%  Similarity=0.228  Sum_probs=179.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCC------CCCEEEEEc-cchhHHHHHHHHHHCCCeEEEEeC
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK------PGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVIST   74 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~------~~~~vlI~G-~g~~G~~~~~la~~~g~~vi~~~~   74 (220)
                      ++|++.++++|+++|+++||++++++.|||+++....+++      +|++|||+| +|++|++++|+|+..|++|+++++
T Consensus       104 ~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~  183 (346)
T 3fbg_A          104 LINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTAS  183 (346)
T ss_dssp             EEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             EEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            5788999999999999999999999999999998777788      899999996 599999999999999999999999


Q ss_pred             CccchHHHHHHcCCCEEEcCCCH--HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhh
Q 027664           75 SPSKKSEAVERLGADSFLVSRDQ--DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  151 (220)
                      ++++++.+ +++|++.++++.+.  +.+++..+ ++|++|||+|.+..++.++++++++|+++.++..  ...++...+.
T Consensus       184 ~~~~~~~~-~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~--~~~~~~~~~~  260 (346)
T 3fbg_A          184 RNETIEWT-KKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAF--ENDQDLNALK  260 (346)
T ss_dssp             SHHHHHHH-HHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSCC--SSCBCGGGGT
T ss_pred             CHHHHHHH-HhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEECCC--CCCCcccccc
Confidence            88776665 67999999998752  34445533 7999999999876679999999999999998753  3456666778


Q ss_pred             cCCeEEEEEecCC------------HHHHHHHHHHHHcCCCccce-EEe---ecccHHHHHHHHHcCCCceeEEEEeCCc
Q 027664          152 TGRKIVGGSLIGG------------LKETQEMIDFAAKHNIRADI-EVI---PADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       152 ~~~~~~~~~~~~~------------~~~~~~~~~~i~~g~i~~~~-~~~---~~~~~~~a~~~~~~~~~~gk~vv~~~~~  215 (220)
                      .+++++.+++...            .+.++++++++++|++++.+ ++|   +++++++||+.+++++..||+|++++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~~  340 (346)
T 3fbg_A          261 PKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNEG  340 (346)
T ss_dssp             TTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSCCCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC---
T ss_pred             ccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEECCccceecCCCHHHHHHHHHHHhcCCcceEEEEecCCc
Confidence            8999999876543            24578899999999999887 677   8999999999999999999999999876


Q ss_pred             c
Q 027664          216 M  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       341 ~  341 (346)
T 3fbg_A          341 H  341 (346)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=4.5e-34  Score=229.83  Aligned_cols=210  Identities=22%  Similarity=0.348  Sum_probs=179.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+...+++|++|||+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       153 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~  232 (378)
T 3uko_A          153 VVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE  232 (378)
T ss_dssp             EEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHH
T ss_pred             EechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            578899999999999999999999999999998777778999999999999999999999999999 8999998887776


Q ss_pred             HHHHHcCCCEEEcCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCCC--CCCCchhhh
Q 027664           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~-----~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +++|+++++|+.+     .+.+++.++ ++|+||||+|.+..++.++++++++ |+++.+|.....  ..++...++
T Consensus       233 ~a-~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~  311 (378)
T 3uko_A          233 TA-KKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV  311 (378)
T ss_dssp             HH-HTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHH
T ss_pred             HH-HHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHh
Confidence            54 7899999999862     234566654 8999999999976789999999996 999999986533  445555555


Q ss_pred             cCCeEEEEEecC---CHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          152 TGRKIVGGSLIG---GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       152 ~~~~~~~~~~~~---~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      . ++++.|++..   ..++++++++++++|++++.  + ++|+|+++++||+.+++++.. |+|+++++
T Consensus       312 ~-~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~-Kvvi~~~~  378 (378)
T 3uko_A          312 T-GRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCL-RCVLDTSK  378 (378)
T ss_dssp             T-TCEEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCS-EEEEETTC
T ss_pred             c-CcEEEEEEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCce-EEEEecCC
Confidence            4 8899998754   45789999999999999854  5 899999999999999888764 99999864

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=2e-34  Score=229.92  Aligned_cols=209  Identities=23%  Similarity=0.262  Sum_probs=182.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       127 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  206 (353)
T 4dup_A          127 LLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCE  206 (353)
T ss_dssp             EEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             EEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            57899999999999999999999999999999977777899999999965 99999999999999999999999988776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CC-CCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LE-LPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~-~~~~~~~~~~  154 (220)
                      .+ +++|++.++|+.+.+   .+.+.++ ++|++|||+|.+ .+..++++++++|+++.+|...+. .. ++...++.++
T Consensus       207 ~~-~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~  284 (353)
T 4dup_A          207 AC-ERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA-YFERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKR  284 (353)
T ss_dssp             HH-HHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG-GHHHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHHTT
T ss_pred             HH-HhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH-HHHHHHHHhccCCEEEEEEecCCCcccCCCHHHHHhcC
Confidence            65 679999999987743   3444444 899999999987 689999999999999999987654 33 6777888999


Q ss_pred             eEEEEEecCCHHH----------HHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          155 KIVGGSLIGGLKE----------TQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~~~~~~~~~~~~----------~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +++.|++.....+          ++++++++++|++++.+ ++|+++++++|++.+++++..||+|+++
T Consensus       285 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          285 LTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             CEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             ceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCccCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9999998755322          77889999999999888 8999999999999999999889999975

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=6.6e-34  Score=225.96  Aligned_cols=208  Identities=21%  Similarity=0.304  Sum_probs=174.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      +++++.++++|+++|+++||++++.+.|||+++.+...+++|++|||+|+ |++|++++|+|++.|++|+++++++++++
T Consensus       119 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  198 (342)
T 4eye_A          119 AVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE  198 (342)
T ss_dssp             EECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             EEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            57899999999999999999999999999999977777899999999998 99999999999999999999999988776


Q ss_pred             HHHHHcCCCEEEcCCC--HHHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCCe
Q 027664           81 EAVERLGADSFLVSRD--QDEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRK  155 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~--~~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~  155 (220)
                      .+ +++|++.++++.+  .+.+++.++  ++|++|||+|.+ .+..++++++++|+++.+|...+. ..++...++.+++
T Consensus       199 ~~-~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~  276 (342)
T 4eye_A          199 FV-KSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP-AFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNA  276 (342)
T ss_dssp             HH-HHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC---CHHHHHHTEEEEEEEEEC----------CCCCGGGTTC
T ss_pred             HH-HhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh-HHHHHHHhhcCCCEEEEEEccCCCCCccCHHHHhhcCC
Confidence            55 7799999998873  124555554  799999999987 699999999999999999976644 4566677889999


Q ss_pred             EEEEEecCCH---------HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          156 IVGGSLIGGL---------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~~~~~~~~~~---------~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++.|+.....         +.++.+++++++| +++.+ ++|+++++++|++.+.+++..||+|+++
T Consensus       277 ~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          277 SLIGVAWGEFLRTHADYLYETQAGLEKLVAEG-MRPPVSARIPLSEGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             EEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT-CCCCEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             EEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC-CCCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9999875432         4688899999999 88888 8999999999999999999899999874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.2e-33  Score=225.54  Aligned_cols=208  Identities=24%  Similarity=0.355  Sum_probs=177.7

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+...+++|++|||+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       152 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~  231 (374)
T 1cdo_A          152 VVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFE  231 (374)
T ss_dssp             EEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             EEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            578899999999999999999999999999998766678999999999999999999999999999 8999998887776


Q ss_pred             HHHHHcCCCEEEcCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCC-CCCCCchhhhc
Q 027664           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK-PLELPAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~-----~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~  152 (220)
                      .+ +++|+++++|+.+     .+.+++.++ ++|++|||+|....++.++++++++ |+++.+|.... ..+++...++.
T Consensus       232 ~~-~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~  310 (374)
T 1cdo_A          232 KA-KVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIA  310 (374)
T ss_dssp             HH-HHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHT
T ss_pred             HH-HHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhc
Confidence            55 7899999998763     133455544 8999999999866789999999999 99999998654 45566667777


Q ss_pred             CCeEEEEEecC---CHHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          153 GRKIVGGSLIG---GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       153 ~~~~~~~~~~~---~~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++ ++.|++..   ..++++++++++++|++++  .+ ++|+|+++++|++.+++++. +|+++++
T Consensus       311 ~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  374 (374)
T 1cdo_A          311 GR-TWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLSL  374 (374)
T ss_dssp             TC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             CC-eEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCe-eEEEEeC
Confidence            88 99998654   2567999999999999984  45 89999999999999988775 7999875

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2e-33  Score=225.59  Aligned_cols=209  Identities=22%  Similarity=0.261  Sum_probs=180.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+...+++|++|||+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       150 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~  229 (371)
T 1f8f_A          150 LSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLE  229 (371)
T ss_dssp             EEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHH
T ss_pred             EechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            578899999999999999999999999999999766668999999999999999999999999999 7999988887766


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~  154 (220)
                      .+ +++|+++++++.+.+   .+++.++ ++|++|||+|....++.++++++++|+++.+|....  ..+++...++.++
T Consensus       230 ~a-~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~  308 (371)
T 1f8f_A          230 LA-KQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGG  308 (371)
T ss_dssp             HH-HHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTT
T ss_pred             HH-HHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCC
Confidence            55 789999999987643   4555554 799999999986678999999999999999998653  3567777888899


Q ss_pred             eEEEEEecCC---HHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          155 KIVGGSLIGG---LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       155 ~~~~~~~~~~---~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      +++.|++...   .++++++++++++|++++.  + + |+|+++++|++.+++++. +|+|+++.
T Consensus       309 ~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~-~Kvvv~~~  371 (371)
T 1f8f_A          309 KTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGIT-LKPIIKIA  371 (371)
T ss_dssp             CEEEECSGGGSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSC-SEEEEECC
T ss_pred             CEEEEeCCCCCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCc-eEEEEeeC
Confidence            9999987642   4678999999999999864  5 6 999999999999988775 79999863

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=3.9e-33  Score=224.12  Aligned_cols=208  Identities=22%  Similarity=0.362  Sum_probs=177.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+...+++|++|||+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       151 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~  230 (374)
T 2jhf_A          151 VVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFA  230 (374)
T ss_dssp             EEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             EEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            578899999999999999999999999999998776678999999999999999999999999999 8999998887776


Q ss_pred             HHHHHcCCCEEEcCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCC--CCCCCchhhh
Q 027664           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~-----~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|+++++|+.+     .+.+++.++ ++|++|||+|....++.++++++++ |+++.+|....  ..+++...++
T Consensus       231 ~~-~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~  309 (374)
T 2jhf_A          231 KA-KEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLL  309 (374)
T ss_dssp             HH-HHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHH
T ss_pred             HH-HHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHh
Confidence            55 7899999998764     234555554 7999999999866789999999999 99999997653  3456667777


Q ss_pred             cCCeEEEEEecCC---HHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          152 TGRKIVGGSLIGG---LKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~~~~~~~~~---~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .++ ++.|++...   .++++++++++++|++++  .+ ++|+|+++++|++.+++++. +|+++++
T Consensus       310 ~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~~  374 (374)
T 2jhf_A          310 SGR-TWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGES-IRTILTF  374 (374)
T ss_dssp             TTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             cCC-eEEEeccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            788 999986542   578999999999999985  35 89999999999999988774 7999874

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.5e-33  Score=223.55  Aligned_cols=210  Identities=21%  Similarity=0.255  Sum_probs=182.9

Q ss_pred             cccccceEeCCCCCCcccc--ccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc
Q 027664            2 VADEHFVVRIPEGAPLDAT--APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~a--a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~   78 (220)
                      ++|++.++++|+++++.++  |++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|++|+++++++++
T Consensus       107 ~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~  186 (336)
T 4b7c_A          107 IGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEK  186 (336)
T ss_dssp             EECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             EechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            5789999999999988877  7899999999999977777899999999998 999999999999999999999999888


Q ss_pred             hHHHHHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC----C---CCCCc
Q 027664           79 KSEAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK----P---LELPA  147 (220)
Q Consensus        79 ~~~~~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~----~---~~~~~  147 (220)
                      ++.+.+++|++.++|+.+.+   .+.+.++ ++|++|||+|.. .+..++++++++|+++.+|....    .   ..++.
T Consensus       187 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~  265 (336)
T 4b7c_A          187 CRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGGE-ILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANY  265 (336)
T ss_dssp             HHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEECCCGGGGC------CCTTT
T ss_pred             HHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCcc-hHHHHHHHHhhCCEEEEEeecccccCCcccccchhH
Confidence            77776789999999987744   3444444 799999999986 78999999999999999987651    1   35566


Q ss_pred             hhhhcCCeEEEEEecCCH-----HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          148 FPLLTGRKIVGGSLIGGL-----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ..++.+++++.|++.+..     +.++++++++++|++++.+ .+++++++++||+.+.+++..||+|+++
T Consensus       266 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          266 LSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             THHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccceeeecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            678899999999987653     6789999999999999987 6799999999999999999889999975

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=2.7e-33  Score=225.01  Aligned_cols=208  Identities=22%  Similarity=0.331  Sum_probs=177.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       150 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~  229 (373)
T 2fzw_A          150 VVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFA  229 (373)
T ss_dssp             EEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred             EEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            578899999999999999999999999999998776678999999999999999999999999999 8999998887776


Q ss_pred             HHHHHcCCCEEEcCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCC--CCCCCchhhh
Q 027664           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~-----~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|+++++|+.+     .+.+++.++ ++|++|||+|....++.++++++++ |+++.+|....  ..++++..++
T Consensus       230 ~~-~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~  308 (373)
T 2fzw_A          230 RA-KEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLV  308 (373)
T ss_dssp             HH-HHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHH
T ss_pred             HH-HHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHh
Confidence            55 7899999998764     234555554 8999999999866789999999999 99999997653  3456666777


Q ss_pred             cCCeEEEEEecC---CHHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          152 TGRKIVGGSLIG---GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~~~~~~~~---~~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .++ ++.|++..   ..++++++++++++|++++  .+ ++|+|+++++|++.+++++. +|+++++
T Consensus       309 ~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 2fzw_A          309 TGR-TWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKS-IRTVVKI  373 (373)
T ss_dssp             TTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCC-SEEEEEC
T ss_pred             cCC-EEEEeccCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCc-ceEEEeC
Confidence            788 99998654   2578999999999999984  45 89999999999999988775 7999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1.6e-33  Score=224.90  Aligned_cols=209  Identities=21%  Similarity=0.245  Sum_probs=178.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||.+ ..+.|||+++... ++++|++|||+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       133 ~v~~~~~~~iP~~l~~~~aa~~-~~~~ta~~al~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  210 (356)
T 1pl8_A          133 KHNAAFCYKLPDNVTFEEGALI-EPLSVGIHACRRG-GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLS  210 (356)
T ss_dssp             EEEGGGEEECCTTSCHHHHHHH-HHHHHHHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             EeehHHEEECcCCCCHHHHHhh-chHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            5788999999999999998865 5778999999654 48999999999999999999999999999 9999998887766


Q ss_pred             HHHHHcCCCEEEcCC---CHH---HHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcC
Q 027664           81 EAVERLGADSFLVSR---DQD---EMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~---~~~---~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  153 (220)
                      .+ +++|+++++++.   +.+   .+.+.+ +++|++|||+|....++.++++++++|+++.+|......+++...++.+
T Consensus       211 ~a-~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  289 (356)
T 1pl8_A          211 KA-KEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIR  289 (356)
T ss_dssp             HH-HHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHT
T ss_pred             HH-HHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHhc
Confidence            55 789999999987   233   334444 4899999999987678999999999999999997555567777788899


Q ss_pred             CeEEEEEecCCHHHHHHHHHHHHcCCCc--cce-EEeecccHHHHHHHHHcCCCceeEEEEeCCc
Q 027664          154 RKIVGGSLIGGLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~i~~g~i~--~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~  215 (220)
                      ++++.|++.+ ..+++++++++++|+++  +.+ ++|+++++++|++.++++ ..+|+|++++++
T Consensus       290 ~~~i~g~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~-~~gKvvi~~~~~  352 (356)
T 1pl8_A          290 EVDIKGVFRY-CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKG-LGLKIMLKCDPS  352 (356)
T ss_dssp             TCEEEECCSC-SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTT-CCSEEEEECCTT
T ss_pred             ceEEEEeccc-HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCC-CceEEEEeCCCC
Confidence            9999998765 46789999999999976  445 799999999999999888 679999999754

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=6.9e-34  Score=233.41  Aligned_cols=212  Identities=18%  Similarity=0.146  Sum_probs=185.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhh--cCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~   78 (220)
                      ++|++.++++|+++|+++||++++++.|||+++...  ..+++|++|||+|+ |++|++++|+|++.|++|++++.++++
T Consensus       178 ~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~  257 (447)
T 4a0s_A          178 VVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQK  257 (447)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             ecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            578899999999999999999999999999998643  56899999999998 999999999999999999999988877


Q ss_pred             hHHHHHHcCCCEEEcCCCH---------------------HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664           79 KSEAVERLGADSFLVSRDQ---------------------DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus        79 ~~~~~~~~g~~~~~~~~~~---------------------~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      ++.+ +++|++.++++.+.                     +.+.+.++ ++|++|||+|.. .++.++.+++++|+++.+
T Consensus       258 ~~~~-~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~-~~~~~~~~l~~~G~iv~~  335 (447)
T 4a0s_A          258 EAAV-RALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRV-TFGLSVIVARRGGTVVTC  335 (447)
T ss_dssp             HHHH-HHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHH-HHHHHHHHSCTTCEEEES
T ss_pred             HHHH-HhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCch-HHHHHHHHHhcCCEEEEE
Confidence            6655 78999999876432                     23444444 799999999986 689999999999999999


Q ss_pred             CCCCCC-CCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          137 GAPEKP-LELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       137 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      |...+. ..++...++.+++++.|++.....++.++++++++|++++.+ ++|+|+++++||+.+.+++..||+|+.+.+
T Consensus       336 G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~GKvvv~~~~  415 (447)
T 4a0s_A          336 GSSSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGKVAVLCMA  415 (447)
T ss_dssp             CCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEESSC
T ss_pred             ecCCCcccccCHHHHHhCCCEEEecCCCCHHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence            977653 456667788899999999998888999999999999999888 899999999999999999988999998865


Q ss_pred             c
Q 027664          215 T  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       416 ~  416 (447)
T 4a0s_A          416 P  416 (447)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-33  Score=224.06  Aligned_cols=209  Identities=20%  Similarity=0.258  Sum_probs=184.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       126 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~  205 (343)
T 2eih_A          126 VLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLR  205 (343)
T ss_dssp             EEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             EeChHHeEECCCCCCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            57889999999999999999999999999999988666899999999998 99999999999999999999999987776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +++|++.++|+.+.+   .+.+.++  ++|++||++| ...++.++++++++|+++.+|...+. .+++...++.++
T Consensus       206 ~~-~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  283 (343)
T 2eih_A          206 RA-KALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-ALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQ  283 (343)
T ss_dssp             HH-HHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-SSSHHHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTT
T ss_pred             HH-HhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-HHHHHHHHHhhccCCEEEEEecCCCCcCccCHHHHHhCC
Confidence            66 678999999887643   3445543  7999999999 45799999999999999999987654 346777788899


Q ss_pred             eEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          155 KIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +++.|++....++++++++++++|++++.+ ++|+|+++++||+.+++++..||+|+++
T Consensus       284 ~~~~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (343)
T 2eih_A          284 LSILGSTMASKSRLFPILRFVEEGKLKPVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV  342 (343)
T ss_dssp             CEEEECCSCCGGGHHHHHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred             cEEEEecCccHHHHHHHHHHHHcCCCCCceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence            999998877778899999999999999888 8999999999999999888789999975

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=7.5e-34  Score=227.77  Aligned_cols=209  Identities=21%  Similarity=0.267  Sum_probs=177.7

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++|| ++.++.|||+++.... +++|++|||+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       144 ~v~~~~~~~~P~~~~~~~aa-l~~~~~ta~~~l~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  221 (370)
T 4ej6_A          144 LVPRKQAFEIPLTLDPVHGA-FCEPLACCLHGVDLSG-IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRR  221 (370)
T ss_dssp             EEEGGGEEEECTTSCTTGGG-GHHHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHH
T ss_pred             EEchhhEEECCCCCCHHHHh-hhhHHHHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            57889999999999999998 7779999999996554 8999999999999999999999999999 8888888877665


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHH---hcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhh
Q 027664           81 EAVERLGADSFLVSRDQD---EMQA---AMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~---~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~  151 (220)
                       +++++|++.++|+.+.+   .+++   +++ ++|+||||+|....++.++++++++|+++.+|....  ..+++...++
T Consensus       222 -~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~  300 (370)
T 4ej6_A          222 -LAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDIL  300 (370)
T ss_dssp             -HHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHH
T ss_pred             -HHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHH
Confidence             55789999999987654   3444   333 899999999987679999999999999999998765  4678888899


Q ss_pred             cCCeEEEEEecCCHHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCC-CceeEEEEeCC
Q 027664          152 TGRKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKAD-VRYRFVIDVAN  214 (220)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~-~~gk~vv~~~~  214 (220)
                      .+++++.|++... .+++++++++++|++++.  + ++|+|+++++|++.+.+++ ..+|+++++++
T Consensus       301 ~~~~~i~g~~~~~-~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~~  366 (370)
T 4ej6_A          301 FRELRVLGSFINP-FVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAER  366 (370)
T ss_dssp             HTTCEEEECCSCT-TCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC---
T ss_pred             hCCcEEEEeccCh-HHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEcccc
Confidence            9999999998765 568999999999999654  5 8999999999999998776 44799888865

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.3e-33  Score=222.83  Aligned_cols=209  Identities=20%  Similarity=0.201  Sum_probs=177.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      ++|+++++++|+++|+++||.+ ..+.|||++++.. ++++|++|||+|+|++|++++|+|+++|++|++++.++++++.
T Consensus       130 ~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~al~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~  207 (352)
T 1e3j_A          130 VHAADFCHKLPDNVSLEEGALL-EPLSVGVHACRRA-GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEV  207 (352)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTH-HHHHHHHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             EeChHHeEECcCCCCHHHHHhh-chHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            5788999999999999999865 5778999999654 5899999999999999999999999999999999888877665


Q ss_pred             HHHHcCCCEEEcCCC-H---HHHHHhc-----CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhc
Q 027664           82 AVERLGADSFLVSRD-Q---DEMQAAM-----GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT  152 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~-~---~~~~~~~-----~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  152 (220)
                      + +++|+++++++.+ .   +.+.+.+     +++|++|||+|....++.++++++++|+++.+|......+++...++.
T Consensus       208 ~-~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  286 (352)
T 1e3j_A          208 A-KNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACA  286 (352)
T ss_dssp             H-HHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHT
T ss_pred             H-HHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccccHHHHHh
Confidence            5 7899999998774 3   3444443     379999999998767899999999999999999765556677778899


Q ss_pred             CCeEEEEEecCCHHHHHHHHHHHHcCCCc--cce-EEeecccHHHHHHHHHcCC-CceeEEEEeCC
Q 027664          153 GRKIVGGSLIGGLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKAD-VRYRFVIDVAN  214 (220)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~g~i~--~~~-~~~~~~~~~~a~~~~~~~~-~~gk~vv~~~~  214 (220)
                      +++++.+++.+ ..+++++++++++|+++  +.+ ++|+|+++++|++.+.+++ ..+|+|+++++
T Consensus       287 ~~~~i~g~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  351 (352)
T 1e3j_A          287 REIDIKSVFRY-CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ  351 (352)
T ss_dssp             TTCEEEECCSC-SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECCC
T ss_pred             cCcEEEEeccc-hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence            99999998765 46789999999999975  445 7999999999999999887 57999998863

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.8e-33  Score=224.38  Aligned_cols=210  Identities=17%  Similarity=0.222  Sum_probs=175.6

Q ss_pred             ccccc--ceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccc
Q 027664            2 VADEH--FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSK   78 (220)
Q Consensus         2 ~v~~~--~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~   78 (220)
                      ++|+.  .++++|+++|+++||+++..+.|||++++.. .+++|++|||+|+|++|++++|+|++.|+ +|++++.++++
T Consensus       125 ~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~al~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~  203 (352)
T 3fpc_A          125 HVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELA-NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHC  203 (352)
T ss_dssp             EESSHHHHCEECCTTSCHHHHTTTTTHHHHHHHHHHHT-TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHH
T ss_pred             EeccccCeEEECCCCCCHHHHhhccchhHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHH
Confidence            35654  8999999999999999999999999999655 48999999999999999999999999999 89999888876


Q ss_pred             hHHHHHHcCCCEEEcCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCch----h
Q 027664           79 KSEAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF----P  149 (220)
Q Consensus        79 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~----~  149 (220)
                      ++.+ +++|+++++|+.+.   +.+++.++  ++|++|||+|.+..++.++++++++|+++.+|.......++..    .
T Consensus       204 ~~~~-~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~  282 (352)
T 3fpc_A          204 CDIA-LEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWG  282 (352)
T ss_dssp             HHHH-HHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTG
T ss_pred             HHHH-HHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCceecchhHhh
Confidence            6544 78999999998664   34556654  7999999999976799999999999999999987643322222    2


Q ss_pred             hhcCCeEEEEEecCC-HHHHHHHHHHHHcCCCccc--e-EEee-cccHHHHHHHHHcCCCc-eeEEEEeC
Q 027664          150 LLTGRKIVGGSLIGG-LKETQEMIDFAAKHNIRAD--I-EVIP-ADYVNTAMERLAKADVR-YRFVIDVA  213 (220)
Q Consensus       150 ~~~~~~~~~~~~~~~-~~~~~~~~~~i~~g~i~~~--~-~~~~-~~~~~~a~~~~~~~~~~-gk~vv~~~  213 (220)
                      ...+++++.+++... ..+++++++++++|++++.  + ++|+ |+++++||+.+++++.. +|+|++++
T Consensus       283 ~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~  352 (352)
T 3fpc_A          283 VGMGHKHIHGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA  352 (352)
T ss_dssp             GGTBCEEEEEBCCCCHHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred             hhccccEEEEeeccCchhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence            235788999987643 5789999999999999975  5 7999 99999999999986654 89999874

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=5.2e-33  Score=223.27  Aligned_cols=207  Identities=27%  Similarity=0.351  Sum_probs=175.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|++ ||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+ +|++++.++++++
T Consensus       152 ~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  230 (373)
T 1p0f_A          152 VVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFP  230 (373)
T ss_dssp             EEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred             EEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            57889999999999999 999999999999998776678999999999999999999999999999 8999998887776


Q ss_pred             HHHHHcCCCEEEcCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCC--CCCCCchhhh
Q 027664           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~-----~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|+++++|+.+     .+.+++.++ ++|+||||+|....++.++++++++ |+++.+|....  ..+++...++
T Consensus       231 ~a-~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~  309 (373)
T 1p0f_A          231 KA-IELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLL  309 (373)
T ss_dssp             HH-HHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHH
T ss_pred             HH-HHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhc
Confidence            55 7899999998763     234555554 8999999999866789999999999 99999997653  3456666777


Q ss_pred             cCCeEEEEEecC--CHHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          152 TGRKIVGGSLIG--GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~~~~~~~~--~~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .++ ++.|++..  ..++++++++++++|++++  .+ ++|+|+++++|++.+++++. +|+++++
T Consensus       310 ~~~-~i~g~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 1p0f_A          310 TGR-SLKGSVFGGFKGEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQG-VRSIMIY  373 (373)
T ss_dssp             TTC-EEEECSGGGCCGGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSC-SEEEEEC
T ss_pred             cCc-eEEeeccCCcCHHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            777 99988653  2368999999999999985  35 89999999999999987764 7999874

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=1.1e-33  Score=221.19  Aligned_cols=206  Identities=24%  Similarity=0.352  Sum_probs=176.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.... +++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus        86 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~  164 (302)
T 1iz0_A           86 AVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA  164 (302)
T ss_dssp             EEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH
T ss_pred             EEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5788999999999999999999999999999998666 899999999998 99999999999999999999999888776


Q ss_pred             HHHHHcCCCEEEcCCC-HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCCeEEE
Q 027664           81 EAVERLGADSFLVSRD-QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRKIVG  158 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~-~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~  158 (220)
                      .+ +++|+++++|+.+ .+..+.+ +++|++|| +|.. .++.++++++++|+++.+|...+. .+++...++.+++++.
T Consensus       165 ~~-~~~ga~~~~~~~~~~~~~~~~-~~~d~vid-~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  240 (302)
T 1iz0_A          165 LP-LALGAEEAATYAEVPERAKAW-GGLDLVLE-VRGK-EVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVL  240 (302)
T ss_dssp             HH-HHTTCSEEEEGGGHHHHHHHT-TSEEEEEE-CSCT-THHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEE
T ss_pred             HH-HhcCCCEEEECCcchhHHHHh-cCceEEEE-CCHH-HHHHHHHhhccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEE
Confidence            66 6799999998876 5544444 78999999 9985 799999999999999999876543 3566667888999999


Q ss_pred             EEecC----CHHHHHHHHH---HHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          159 GSLIG----GLKETQEMID---FAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       159 ~~~~~----~~~~~~~~~~---~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      |+...    ..++++++++   ++++|++++.+ ++|+++++++|++.+++++..||+++++
T Consensus       241 g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  302 (302)
T 1iz0_A          241 GFWLTPLLREGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL  302 (302)
T ss_dssp             ECCHHHHTTCHHHHHHHHHHHGGGBTTTBCCCEEEEEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred             EEeccchhhhHHHHHHHHhhhHHHHcCCcccccceEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            98753    5677899999   99999999888 8999999999999998888789999864

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=7.8e-34  Score=226.82  Aligned_cols=210  Identities=19%  Similarity=0.273  Sum_probs=175.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc--
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK--   78 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~--   78 (220)
                      ++|++.++++|+++|+++||++++.++|||+++....++++|++|||+|+ |++|++++|+|+.+|+++++++++.++  
T Consensus       127 ~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~  206 (357)
T 1zsy_A          127 VFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQ  206 (357)
T ss_dssp             EEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHH
T ss_pred             ecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchH
Confidence            57889999999999999999999999999999988777899999999997 999999999999999988888766543  


Q ss_pred             -hHHHHHHcCCCEEEcCCCH--HHHHHhcC---CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhh
Q 027664           79 -KSEAVERLGADSFLVSRDQ--DEMQAAMG---TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLL  151 (220)
Q Consensus        79 -~~~~~~~~g~~~~~~~~~~--~~~~~~~~---~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~  151 (220)
                       +.++++++|+++++|+.+.  +.+.+.++   ++|++|||+|++. ...++++++++|+++.+|...+ ...++...++
T Consensus       207 ~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  285 (357)
T 1zsy_A          207 KLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKS-STELLRQLARGGTMVTYGGMAKQPVVASVSLLI  285 (357)
T ss_dssp             HHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEESSCHHH-HHHHHTTSCTTCEEEECCCCTTCCBCCCHHHHH
T ss_pred             HHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEECCCcHH-HHHHHHhhCCCCEEEEEecCCCCCCCCCHHHHH
Confidence             3345578999999986532  23334433   5999999999874 5678999999999999986543 4567777788


Q ss_pred             cCCeEEEEEecCC----------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          152 TGRKIVGGSLIGG----------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~~~~~~~~~----------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      .+++++.|++...          .+.++++++++++|++++.+ ++|+|+++++|++.+.+++..||+|+++
T Consensus       286 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (357)
T 1zsy_A          286 FKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSKQILTM  357 (357)
T ss_dssp             HSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred             hcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCccceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence            8999999987532          13578899999999999887 8999999999999999888789999874

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=222.60  Aligned_cols=210  Identities=29%  Similarity=0.463  Sum_probs=184.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++.+.|||+++.+. .+++|++|||+|+ |++|++++|+++..|++|+++++++++.+
T Consensus       130 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~  208 (347)
T 2hcy_A          130 TADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSA-NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEE  208 (347)
T ss_dssp             EEETTTSEEECTTCCHHHHGGGGTHHHHHHHHHHTT-TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHH
T ss_pred             EeccccEEECCCCCCHHHHHHHhhhHHHHHHHHHhc-CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHH
Confidence            578899999999999999999999999999999877 5899999999998 99999999999999999999998887765


Q ss_pred             HHHHHcCCCEEEcCCC-H---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCC
Q 027664           81 EAVERLGADSFLVSRD-Q---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~-~---~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      .+ +++|++.++|+.+ .   +.+++.++ ++|++||++|....++.++++++++|+++.+|...+ ..+++...++.++
T Consensus       209 ~~-~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~  287 (347)
T 2hcy_A          209 LF-RSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKS  287 (347)
T ss_dssp             HH-HHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTT
T ss_pred             HH-HHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCC
Confidence            54 6799998888763 2   23444443 799999999986678999999999999999998663 3556667788899


Q ss_pred             eEEEEEecCCHHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          155 KIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      +++.|++.....+++++++++++|++++.+++|+|+++++|++.+++++..||+|++++
T Consensus       288 ~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  346 (347)
T 2hcy_A          288 ISIVGSYVGNRADTREALDFFARGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTS  346 (347)
T ss_dssp             CEEEECCCCCHHHHHHHHHHHHTTSCCCCEEEEEGGGHHHHHHHHHTTCCSSEEEEESC
T ss_pred             cEEEEccCCCHHHHHHHHHHHHhCCCccceEEEcHHHHHHHHHHHHcCCcceeEEEecC
Confidence            99999988888999999999999999987789999999999999998887899999875

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=3.2e-33  Score=221.40  Aligned_cols=211  Identities=17%  Similarity=0.205  Sum_probs=182.7

Q ss_pred             ccc-ccceEeCCCCCCccc---cccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc
Q 027664            2 VAD-EHFVVRIPEGAPLDA---TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus         2 ~v~-~~~~~~ip~~~s~~~---aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      +++ ++.++++|+++|+++   ||++++.+.|||+++.+..++++|++|||+|+ |++|++++|+++..|++|+++++++
T Consensus       104 ~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  183 (334)
T 3qwb_A          104 KISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD  183 (334)
T ss_dssp             EEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            456 889999999999999   88899999999999988877899999999995 9999999999999999999999988


Q ss_pred             cchHHHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhh
Q 027664           77 SKKSEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPL  150 (220)
Q Consensus        77 ~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~  150 (220)
                      ++++.+ +++|++.++|+.+.+   .+.+.++  ++|++|||+|.. .++.++++++++|+++.+|...+. ..++...+
T Consensus       184 ~~~~~~-~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~  261 (334)
T 3qwb_A          184 EKLKIA-KEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKD-TFEISLAALKRKGVFVSFGNASGLIPPFSITRL  261 (334)
T ss_dssp             HHHHHH-HHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGGG-GHHHHHHHEEEEEEEEECCCTTCCCCCBCGGGG
T ss_pred             HHHHHH-HHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCChH-HHHHHHHHhccCCEEEEEcCCCCCCCCcchhhh
Confidence            777654 789999999987643   4455553  799999999985 799999999999999999987655 46777788


Q ss_pred             hcCCeEEEEEecC----CHHH----HHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          151 LTGRKIVGGSLIG----GLKE----TQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       151 ~~~~~~~~~~~~~----~~~~----~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      +.+++++.++...    ...+    ++++++++++|++++.+ ++|+++++++||+.+++++..||+|+++++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~q  334 (334)
T 3qwb_A          262 SPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRKTVGKLVLEIPQ  334 (334)
T ss_dssp             TTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred             hhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCceeeEEcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence            8899999876432    3333    47889999999999988 899999999999999999988999999853

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9.6e-34  Score=227.95  Aligned_cols=208  Identities=22%  Similarity=0.317  Sum_probs=181.1

Q ss_pred             cc-cccceEeCCCCCCcc-ccccccchhhhhhhHHHhhcC-CCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCcc
Q 027664            2 VA-DEHFVVRIPEGAPLD-ATAPLLCAGITVYSPLRFYGL-DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS   77 (220)
Q Consensus         2 ~v-~~~~~~~ip~~~s~~-~aa~~~~~~~ta~~~l~~~~~-~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~   77 (220)
                      ++ |++.++++|+++|++ +|+.++ ++.|||+++.. .+ +++|++|||+|+|++|++++|+|+.+|+ +|++++++++
T Consensus       154 ~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al~~-~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  231 (380)
T 1vj0_A          154 VLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAFDE-YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN  231 (380)
T ss_dssp             EECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHHHT-CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             EEcccceEEECCCCCChHHhHhhhc-HHHHHHHHHHh-cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHH
Confidence            46 899999999999999 666555 99999999965 46 7999999999999999999999999995 9999999987


Q ss_pred             chHHHHHHcCCCEEEcCC---CHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC-C-CCCCCc
Q 027664           78 KKSEAVERLGADSFLVSR---DQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-K-PLELPA  147 (220)
Q Consensus        78 ~~~~~~~~~g~~~~~~~~---~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~~~~~  147 (220)
                      +++.+ +++|+++++++.   +.+   .+++.++  ++|+||||+|.+..+..++++++++|+++.+|... + ..+++.
T Consensus       232 ~~~~~-~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~  310 (380)
T 1vj0_A          232 RLKLA-EEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKV  310 (380)
T ss_dssp             HHHHH-HHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECH
T ss_pred             HHHHH-HHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEch
Confidence            77665 689999999987   433   3455554  79999999998767899999999999999999876 4 556777


Q ss_pred             hh-hhcCCeEEEEEecCCHHHHHHHHHHHHc--CCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          148 FP-LLTGRKIVGGSLIGGLKETQEMIDFAAK--HNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       148 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~--g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      .. ++.+++++.|++....++++++++++++  |++++.+ ++|+|+++++|++.+++++.. |+|++++
T Consensus       311 ~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~-Kvvl~~~  379 (380)
T 1vj0_A          311 YEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREAL-KVILYPE  379 (380)
T ss_dssp             HHHTTTTTCEEEECCCCCHHHHHHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHHHTSCS-CEEEECC
T ss_pred             HHHHHhCCeEEEEeecCCHHHHHHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHhcCCCc-eEEEEeC
Confidence            77 8899999999988888899999999999  9998777 899999999999999988877 9999874

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=7.1e-34  Score=224.02  Aligned_cols=206  Identities=23%  Similarity=0.254  Sum_probs=174.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++++.|||++++ ..++++|++|||+| +|++|++++|+|+..|++|+++++. ++ .
T Consensus       113 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~-~~-~  189 (321)
T 3tqh_A          113 CASPDTIIQKLEKLSFLQAASLPTAGLTALQALN-QAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK-RN-H  189 (321)
T ss_dssp             EECGGGEEECCTTSCHHHHHHSHHHHHHHHHHHH-HTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH-HH-H
T ss_pred             EecHHHhccCCCCCCHHHHhhhhhHHHHHHHHHH-hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc-ch-H
Confidence            5789999999999999999999999999999994 45689999999998 5999999999999999999988754 44 4


Q ss_pred             HHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEE
Q 027664           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGS  160 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  160 (220)
                      ++++++|+++++|+.+.+...+..+++|++|||+|++. ...++++++++|+++.+|......  ....+..+++++.++
T Consensus       190 ~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~--~~~~~~~~~~~~~~~  266 (321)
T 3tqh_A          190 AFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGDV-GIQSIDCLKETGCIVSVPTITAGR--VIEVAKQKHRRAFGL  266 (321)
T ss_dssp             HHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCHHH-HHHHGGGEEEEEEEEECCSTTHHH--HHHHHHHTTCEEECC
T ss_pred             HHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCcHH-HHHHHHhccCCCEEEEeCCCCchh--hhhhhhhcceEEEEE
Confidence            55588999999998876634444479999999999884 689999999999999997644221  122356788888885


Q ss_pred             e-cCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          161 L-IGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       161 ~-~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      . ....++++.+++++++|++++.+ ++|+++++++||+.+++++..||+|++++
T Consensus       267 ~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  321 (321)
T 3tqh_A          267 LKQFNIEELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHVRGKLVFKVR  321 (321)
T ss_dssp             CCCCCHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             ecCCCHHHHHHHHHHHHCCCcccccccEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence            4 44678899999999999999988 89999999999999999998899999873

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=2.2e-33  Score=224.49  Aligned_cols=209  Identities=18%  Similarity=0.217  Sum_probs=179.4

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCC-----CCCEEEEEc-cchhHHHHHHHHHH-CCCeEEEEeC
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK-----PGMHVGVVG-LGGLGHVAVKFAKA-MGVKVTVIST   74 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~-----~~~~vlI~G-~g~~G~~~~~la~~-~g~~vi~~~~   74 (220)
                      ++|++.++++|+++|+++||+++++++|||+++.....++     +|++|||+| +|++|++++|+|++ .|++|++++.
T Consensus       126 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~  205 (363)
T 4dvj_A          126 LVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATAS  205 (363)
T ss_dssp             EEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             EeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5788999999999999999999999999999997777777     899999999 59999999999998 5889999999


Q ss_pred             CccchHHHHHHcCCCEEEcCCCH--HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhh
Q 027664           75 SPSKKSEAVERLGADSFLVSRDQ--DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  151 (220)
                      ++++++.+ +++|+++++|+.+.  +.+++..+ ++|+||||+|++..++.++++++++|+++.+|.   +..++...+.
T Consensus       206 ~~~~~~~~-~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~---~~~~~~~~~~  281 (363)
T 4dvj_A          206 RPETQEWV-KSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDD---PSAFDIMLFK  281 (363)
T ss_dssp             SHHHHHHH-HHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSC---CSSCCGGGGT
T ss_pred             CHHHHHHH-HHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECC---CCccchHHHh
Confidence            98777665 78999999998752  33444433 899999999987678999999999999999964   3466777788


Q ss_pred             cCCeEEEEEecCC------------HHHHHHHHHHHHcCCCccce-EEe---ecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          152 TGRKIVGGSLIGG------------LKETQEMIDFAAKHNIRADI-EVI---PADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       152 ~~~~~~~~~~~~~------------~~~~~~~~~~i~~g~i~~~~-~~~---~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      .+++++.++....            .+.++++++++++|++++.+ +++   +++++++|++.+.+++..||+|+++..
T Consensus       282 ~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~~  360 (363)
T 4dvj_A          282 RKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTARGKVVIEGFG  360 (363)
T ss_dssp             TTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCCCEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECSC
T ss_pred             hccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeeccccceecCCCHHHHHHHHHHHHhCCCceEEEEeCcc
Confidence            8999999876543            24578999999999999887 566   899999999999999989999999864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=5.8e-33  Score=221.09  Aligned_cols=207  Identities=17%  Similarity=0.160  Sum_probs=177.5

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++. .+.|||+++.. .++ +|++|||+|+|++|++++|+|+..|+ +|+++++++++++
T Consensus       130 ~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~~l~~-~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~  206 (348)
T 2d8a_A          130 VVPAQNIWKNPKSIPPEYATLQE-PLGNAVDTVLA-GPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRE  206 (348)
T ss_dssp             EEEGGGEEECCTTSCHHHHTTHH-HHHHHHHHHTT-SCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             EeChHHeEECCCCCCHHHHHhhh-HHHHHHHHHHh-cCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            57889999999999999999775 77899999954 457 99999999999999999999999999 9999999887766


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCc-hhhhcCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA-FPLLTGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~  154 (220)
                      .+ +++|+++++|+.+.+   .+.+.++  ++|++|||+|....++.++++++++|+++.+|.......++. ..++.++
T Consensus       207 ~~-~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~  285 (348)
T 2d8a_A          207 LA-KKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKA  285 (348)
T ss_dssp             HH-HHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHTTTTT
T ss_pred             HH-HHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCcccCchHHHHhCC
Confidence            55 689999999887643   4555554  799999999986678999999999999999998766667777 7788999


Q ss_pred             eEEEEEecCC-HHHHHHHHHHHHcCCCc--cce-EEee-cccHHHHHHHHHcCCCceeEEEEeC
Q 027664          155 KIVGGSLIGG-LKETQEMIDFAAKHNIR--ADI-EVIP-ADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       155 ~~~~~~~~~~-~~~~~~~~~~i~~g~i~--~~~-~~~~-~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      +++.|++... .++++++++++++|+++  +.+ ++|+ |+++++|++.+++ ...+|+|++++
T Consensus       286 ~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~-~~~gKvvi~~~  348 (348)
T 2d8a_A          286 LTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRA-GKTGKVVFMLK  348 (348)
T ss_dssp             CEEEECCCCCSHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHT-TCCSEEEEEC-
T ss_pred             cEEEEecCCCcHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhC-CCceEEEEeeC
Confidence            9999987766 78899999999999964  556 7999 9999999999977 55799999863

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=5.5e-33  Score=221.14  Aligned_cols=207  Identities=25%  Similarity=0.345  Sum_probs=183.3

Q ss_pred             cccc-cceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCccc
Q 027664            2 VADE-HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSK   78 (220)
Q Consensus         2 ~v~~-~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~-g~~vi~~~~~~~~   78 (220)
                      ++|+ +.++++ +++|+++||++++++.|||+++.+ ..+++|++|||+|+ |++|++++|+++.. |++|+++++++++
T Consensus       131 ~v~~~~~~~~i-~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~  208 (347)
T 1jvb_A          131 IVPHYKYMYKL-RRLNAVEAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEA  208 (347)
T ss_dssp             EESCGGGEEEC-SSSCHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHH
T ss_pred             EecCccceEEe-CCCCHHHcccchhhHHHHHHHHHh-cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            5788 899999 999999999999999999999987 45899999999998 59999999999999 9999999998877


Q ss_pred             hHHHHHHcCCCEEEcCCCHHH---HHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC-CCCCCCchhhhc
Q 027664           79 KSEAVERLGADSFLVSRDQDE---MQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KPLELPAFPLLT  152 (220)
Q Consensus        79 ~~~~~~~~g~~~~~~~~~~~~---~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~  152 (220)
                      ++.+ +++|++.++|+.+.+.   +.+.+  +++|++||++|....++.++++++++|+++.+|... +. +++...++.
T Consensus       209 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~  286 (347)
T 1jvb_A          209 VEAA-KRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHAPLITL  286 (347)
T ss_dssp             HHHH-HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCHHHHHH
T ss_pred             HHHH-HHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCHHHHHh
Confidence            7665 6799999998876443   55555  479999999998767889999999999999999866 55 777777888


Q ss_pred             CCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          153 GRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +++++.|++....++++++++++++|++++.+ ++|+|+++++|++.+++++..||+|+++
T Consensus       287 ~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          287 SEIQFVGSLVGNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             HTCEEEECCSCCHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             CceEEEEEeccCHHHHHHHHHHHHcCCCCceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence            99999999888889999999999999999888 8999999999999999988889999874

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.3e-33  Score=222.51  Aligned_cols=210  Identities=20%  Similarity=0.272  Sum_probs=169.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCccch
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKK   79 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g-~~vi~~~~~~~~~   79 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|++.| ++|++++ +++++
T Consensus       102 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~  180 (349)
T 4a27_A          102 CTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKH  180 (349)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGH
T ss_pred             EecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHH
Confidence            57889999999999999999999999999999987777999999999998 999999999999996 4888887 44455


Q ss_pred             HHHHHHcCCCEEEcCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-------------
Q 027664           80 SEAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-------------  142 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~---~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-------------  142 (220)
                      +.+ + +|++++++ .+.   +.+++.++ ++|++|||+|++. ++.++++++++|+++.+|.....             
T Consensus       181 ~~~-~-~ga~~~~~-~~~~~~~~~~~~~~~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~  256 (349)
T 4a27_A          181 EAI-K-DSVTHLFD-RNADYVQEVKRISAEGVDIVLDCLCGDN-TGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKS  256 (349)
T ss_dssp             HHH-G-GGSSEEEE-TTSCHHHHHHHHCTTCEEEEEEECC--------CTTEEEEEEEEEEC------------------
T ss_pred             HHH-H-cCCcEEEc-CCccHHHHHHHhcCCCceEEEECCCchh-HHHHHHHhhcCCEEEEECCCcccccccccccccccc
Confidence            444 5 99999998 443   34555554 8999999999874 68999999999999999975311             


Q ss_pred             ----CCCCchhhhcCCeEEEEEecCC-----------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCce
Q 027664          143 ----LELPAFPLLTGRKIVGGSLIGG-----------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRY  206 (220)
Q Consensus       143 ----~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~g  206 (220)
                          ..++...++.++.++.++....           .++++++++++++|++++.+ ++|+++++++|++.+++++..|
T Consensus       257 ~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~G  336 (349)
T 4a27_A          257 WWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRGNIG  336 (349)
T ss_dssp             -------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSCCCCEEEEECGGGHHHHHHHHHTTCCSS
T ss_pred             cccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCccccccceECHHHHHHHHHHHHhCCCCc
Confidence                2255566788899999987532           56789999999999999888 8999999999999999999899


Q ss_pred             eEEEEeCCcc
Q 027664          207 RFVIDVANTM  216 (220)
Q Consensus       207 k~vv~~~~~~  216 (220)
                      |+|++++++.
T Consensus       337 Kvvi~~~~~~  346 (349)
T 4a27_A          337 KLILDVEKTP  346 (349)
T ss_dssp             EEEEETTCCC
T ss_pred             eEEEecCCCC
Confidence            9999998753

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=4.9e-33  Score=219.56  Aligned_cols=209  Identities=22%  Similarity=0.246  Sum_probs=178.7

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++.+.|+|+++.+..++++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       100 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  179 (325)
T 3jyn_A          100 VLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAA  179 (325)
T ss_dssp             EEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH
T ss_pred             EecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            57889999999999999999999999999999988877999999999995 99999999999999999999999988776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcC-
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTG-  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~-  153 (220)
                      .+ +++|++.++|+.+.+   .+.+.++  ++|++|||+|.. .+..++++++++|+++.+|...+. ..++...+..+ 
T Consensus       180 ~~-~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~  257 (325)
T 3jyn_A          180 HA-KALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQD-TWLTSLDSVAPRGLVVSFGNASGPVSGVNLGILAQKD  257 (325)
T ss_dssp             HH-HHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCGG-GHHHHHTTEEEEEEEEECCCTTCCCCSCCTHHHHHTT
T ss_pred             HH-HHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCChH-HHHHHHHHhcCCCEEEEEecCCCCCCCCCHHHHhhcC
Confidence            55 689999999987743   4455554  799999999985 799999999999999999987665 35777777666 


Q ss_pred             CeEEEEEec----CCH----HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          154 RKIVGGSLI----GGL----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~~~~~~~----~~~----~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++.+.+...    .+.    +.++++++++++|++++.+ ++|+++++++||+.+++++..||+|+.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          258 SVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVDGIEQYALKDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             SCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             cEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCccccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            566655432    222    2345889999999999988 8999999999999999999999999864

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=9e-33  Score=219.89  Aligned_cols=208  Identities=18%  Similarity=0.198  Sum_probs=171.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||+++ ...++++++... .+++|++|+|+|+|++|++++|+|+++|++ +++++.+++++ 
T Consensus       122 ~v~~~~~~~iP~~l~~~~aa~l~-~~~~~~~~~~~~-~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~-  198 (346)
T 4a2c_A          122 VVKRKNVFALPTDMPIEDGAFIE-PITVGLHAFHLA-QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKL-  198 (346)
T ss_dssp             EEEGGGEEECCTTSCGGGGGGHH-HHHHHHHHHHHT-TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-
T ss_pred             ccchheEEECCCCCCHHHHHhch-HHHHHHHHHHHh-ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHH-
Confidence            57899999999999999999765 345555555554 479999999999999999999999999995 56666666655 


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCC---Cchhhhc
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLEL---PAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~---~~~~~~~  152 (220)
                      ++++++|+++++|+.+.+   .++.+++  ++|+++||+|.+..++.++++++++|+++.+|...++..+   +...++.
T Consensus       199 ~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  278 (346)
T 4a2c_A          199 ALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILR  278 (346)
T ss_dssp             HHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHH
T ss_pred             HHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccccccchhhhhhheecCCeEEEEEeccCCCccccccCHHHHhh
Confidence            455899999999988743   3445554  7999999999887899999999999999999987765433   3445688


Q ss_pred             CCeEEEEEecCC-----HHHHHHHHHHHHcCCCccc--e-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          153 GRKIVGGSLIGG-----LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       153 ~~~~~~~~~~~~-----~~~~~~~~~~i~~g~i~~~--~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +++++.|++...     .++++++++++++|++++.  + ++|+|+++++|++.+++++..||+||.+
T Consensus       279 k~~~i~G~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          279 KELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             HTCEEEECCTTCCSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred             ceeEEEEEeccccCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence            999999986532     3679999999999998754  5 8999999999999999999889999864

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=1.5e-34  Score=228.18  Aligned_cols=209  Identities=19%  Similarity=0.213  Sum_probs=177.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhh--cCCCC--CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKP--GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~--~~~~~--~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      ++|++.++++|+++|+++||++++.+.|||+++...  ..+++  |+ |||+|+ |++|++++|+|++.|++|++++.++
T Consensus       103 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~  181 (324)
T 3nx4_A          103 RVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRE  181 (324)
T ss_dssp             EECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             ecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCe-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999999999999999999999999988643  22555  45 999998 9999999999999999999999998


Q ss_pred             cchHHHHHHcCCCEEEcCCCHHHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCC
Q 027664           77 SKKSEAVERLGADSFLVSRDQDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGR  154 (220)
Q Consensus        77 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      ++++.+ +++|+++++|+.+.+.++++++ ++|++|||+|++ .++.++++++++|+++.+|...+. .+++...++.++
T Consensus       182 ~~~~~~-~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~  259 (324)
T 3nx4_A          182 STHGYL-KSLGANRILSRDEFAESRPLEKQLWAGAIDTVGDK-VLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRN  259 (324)
T ss_dssp             GGHHHH-HHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCHH-HHHHHHHTEEEEEEEEECCCTTCSEEEEESHHHHHHC
T ss_pred             HHHHHH-HhcCCCEEEecCCHHHHHhhcCCCccEEEECCCcH-HHHHHHHHHhcCCEEEEEecCCCCCCCCCHHHHhhcC
Confidence            877666 7899999999876544444443 899999999987 799999999999999999987653 456667788899


Q ss_pred             eEEEEEecCC------HHHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          155 KIVGGSLIGG------LKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       155 ~~~~~~~~~~------~~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      +++.|++...      .+.++.+++++++|++++..++|+++++++||+.+++++..||+|++++
T Consensus       260 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~~  324 (324)
T 3nx4_A          260 VRLQGVDSVMTPPARRAEAWARLVKDLPESFYAQAATEITLADAPKFADAIINNQVQGRTLVKIK  324 (324)
T ss_dssp             CEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHHHHEEEEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             eEEEEEeccccChHHHHHHHHHHHHHHHcCCCCCCceeEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence            9999986532      2557888899999998876689999999999999999998899999874

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=3.3e-33  Score=223.74  Aligned_cols=207  Identities=13%  Similarity=0.145  Sum_probs=174.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+ +|+++||++ ..+.|||+++.... +++|++|||+|+|++|++++|+|+++|++ |++++.++++++
T Consensus       142 ~v~~~~~~~iP~-~s~~~aa~~-~~~~ta~~~l~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  218 (363)
T 3m6i_A          142 NHPAVWCHKIGN-MSYENGAML-EPLSVALAGLQRAG-VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLK  218 (363)
T ss_dssp             EEEGGGEEECTT-CCHHHHHHH-HHHHHHHHHHHHHT-CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHH
T ss_pred             EEehhhEEECCC-CCHHHHHhh-hHHHHHHHHHHHcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            578899999999 999999977 57889999996554 89999999999999999999999999996 999998887776


Q ss_pred             HHHHHcCCCEEEcCC----C-H---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhh
Q 027664           81 EAVERLGADSFLVSR----D-Q---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL  150 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~----~-~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  150 (220)
                      .+ +++ ++.++++.    + .   +.+++.++  ++|++|||+|.+..++.++++++++|+++.+|.......++...+
T Consensus       219 ~a-~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~  296 (363)
T 3m6i_A          219 FA-KEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRA  296 (363)
T ss_dssp             HH-HHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCSCCCCCHHHH
T ss_pred             HH-HHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCCCccccHHHH
Confidence            55 667 64454432    2 2   24555554  799999999998678999999999999999998776677888888


Q ss_pred             hcCCeEEEEEecCCHHHHHHHHHHHHcCCCc--cce-EEeecccHHHHHHHHHcC-CCceeEEEEeCC
Q 027664          151 LTGRKIVGGSLIGGLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKA-DVRYRFVIDVAN  214 (220)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~--~~~-~~~~~~~~~~a~~~~~~~-~~~gk~vv~~~~  214 (220)
                      +.+++++.+++.+ .++++++++++++|+++  +.+ ++|+|+++++||+.++++ ...+|+|++.++
T Consensus       297 ~~~~~~i~g~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  363 (363)
T 3m6i_A          297 SVREVDLQFQYRY-CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE  363 (363)
T ss_dssp             HHHTCEEEECCSC-SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred             HhcCcEEEEccCC-HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence            9999999999876 67899999999999995  446 899999999999999987 566899998753

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=3.4e-33  Score=222.00  Aligned_cols=207  Identities=16%  Similarity=0.163  Sum_probs=177.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++ ..+.|||+++....++ +|++|||+|+|++|++++|+|+.+|+ +|+++++++++++
T Consensus       126 ~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~  203 (343)
T 2dq4_A          126 VVPAENAWVNPKDLPFEVAAIL-EPFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLA  203 (343)
T ss_dssp             EEEGGGEEEECTTSCHHHHTTH-HHHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHG
T ss_pred             EEchHHeEECCCCCCHHHHHhh-hHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            5788999999999999999876 5677999999745568 99999999999999999999999999 9999999987766


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCc-hhhhcCCe
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA-FPLLTGRK  155 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~  155 (220)
                      .+ +++ +++++++.+.+   .+++.++ ++|++|||+|....++.++++++++|+++.+|......+++. ..++.+++
T Consensus       204 ~~-~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~  281 (343)
T 2dq4_A          204 FA-RPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGI  281 (343)
T ss_dssp             GG-TTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCEEECHHHHTGGGTC
T ss_pred             HH-HHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCceeCcHHHHHhCce
Confidence            55 678 99999887643   3444444 899999999986578999999999999999998665566777 77888999


Q ss_pred             EEEEEecC-CHHHHHHHHHHHHcCCC--ccce-EEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          156 IVGGSLIG-GLKETQEMIDFAAKHNI--RADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       156 ~~~~~~~~-~~~~~~~~~~~i~~g~i--~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      ++.|++.. ..++++++++++++|++  .+.+ ++|+++++++|++.+++++. ||+|++++
T Consensus       282 ~i~g~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvv~~~~  342 (343)
T 2dq4_A          282 TAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQA-VKVILDPK  342 (343)
T ss_dssp             EEEECCSCCTTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSC-SEEEEETT
T ss_pred             EEEEeecCCCHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCc-eEEEEeeC
Confidence            99998776 66889999999999996  4556 89999999999999998877 99999874

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=1.1e-32  Score=218.22  Aligned_cols=210  Identities=19%  Similarity=0.248  Sum_probs=180.3

Q ss_pred             cccccceEeCCCCCCccc--cccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc
Q 027664            2 VADEHFVVRIPEGAPLDA--TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~--aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~   78 (220)
                      ++|++.++++|+++|+++  ||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|++|+++++++++
T Consensus       103 ~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~  182 (333)
T 1wly_A          103 LYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEK  182 (333)
T ss_dssp             EEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             EecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            578899999999999999  99999999999999987667899999999996 999999999999999999999999877


Q ss_pred             hHHHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCch-hhh
Q 027664           79 KSEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAF-PLL  151 (220)
Q Consensus        79 ~~~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~-~~~  151 (220)
                      .+.+ +++|++.++|+.+.+   .+.+.++  ++|++|||+|.. .++.++++++++|+++.+|...+ ..+++.. .++
T Consensus       183 ~~~~-~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~  260 (333)
T 1wly_A          183 AETA-RKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKD-TLQKSLDCLRPRGMCAAYGHASGVADPIRVVEDLG  260 (333)
T ss_dssp             HHHH-HHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCTT-THHHHHHTEEEEEEEEECCCTTCCCCCCCHHHHTT
T ss_pred             HHHH-HHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcHH-HHHHHHHhhccCCEEEEEecCCCCcCCCChhHhhh
Confidence            6666 678999998887643   3444443  799999999984 79999999999999999998664 3566666 677


Q ss_pred             cCC--eEEEEEecC---CH----HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          152 TGR--KIVGGSLIG---GL----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       152 ~~~--~~~~~~~~~---~~----~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      .++  +++.|++..   ..    +.++++++++++|++++.+ ++|+++++++|++.+++++..||+|++++
T Consensus       261 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~  332 (333)
T 1wly_A          261 VRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAAAAHKYMGGRQTIGSIVLLPQ  332 (333)
T ss_dssp             TTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCSCCSEEEEETT
T ss_pred             hcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCcCCCcceEEeHHHHHHHHHHHHcCCCceEEEEEeC
Confidence            888  898887541   22    3688999999999999888 89999999999999998887899999875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=8.6e-34  Score=223.00  Aligned_cols=199  Identities=15%  Similarity=0.244  Sum_probs=154.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++|+++||++++++.|||+++ +..++++|++|||+|+|++|++++|+|++.|++|++++ ++++++.
T Consensus       103 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~  180 (315)
T 3goh_A          103 VLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQAL  180 (315)
T ss_dssp             EEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHH
T ss_pred             EEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHH
Confidence            578999999999999999999999999999999 56668999999999999999999999999999999999 7777665


Q ss_pred             HHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEe
Q 027664           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSL  161 (220)
Q Consensus        82 ~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  161 (220)
                      + +++|++++++  +.   +++.+++|++|||+|++. ...++++++++|+++.+|.......++   .+.+.+.+....
T Consensus       181 ~-~~lGa~~v~~--d~---~~v~~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~---~~~~~~~~~~~~  250 (315)
T 3goh_A          181 A-AKRGVRHLYR--EP---SQVTQKYFAIFDAVNSQN-AAALVPSLKANGHIICIQDRIPAPIDP---AFTRTISYHEIA  250 (315)
T ss_dssp             H-HHHTEEEEES--SG---GGCCSCEEEEECC--------TTGGGEEEEEEEEEECCC-------------CCSEEEEEC
T ss_pred             H-HHcCCCEEEc--CH---HHhCCCccEEEECCCchh-HHHHHHHhcCCCEEEEEeCCCCccccc---hhhhcceeeEEE
Confidence            5 7899999985  22   233458999999999874 688999999999999997654322222   223344444332


Q ss_pred             c------CCH-------HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          162 I------GGL-------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       162 ~------~~~-------~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      .      ...       +.++++++++++|++++.+ ++|+|+++++||+.++  +..||+|+++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~gKvvi~~~~  315 (315)
T 3goh_A          251 LGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEALDHSE--QTKLKTVLTLNE  315 (315)
T ss_dssp             GGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHH--HHCCCEEEESCC
T ss_pred             eecccccCChhHHHHHHHHHHHHHHHHHCCCcccccceEecHHHHHHHHHHHH--hcCCcEEEEecC
Confidence            2      222       2467899999999999888 8999999999999998  556999999864

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.6e-32  Score=218.05  Aligned_cols=208  Identities=19%  Similarity=0.186  Sum_probs=174.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+...+++|++|||+|+ |++|++++|+|+..|++|+++ .++++++
T Consensus       110 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~  188 (343)
T 3gaz_A          110 AVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLE  188 (343)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHH
T ss_pred             EecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHH
Confidence            57889999999999999999999999999999966667899999999995 999999999999999999999 6666665


Q ss_pred             HHHHHcCCCEEEcCCC--HHHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeE
Q 027664           81 EAVERLGADSFLVSRD--QDEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKI  156 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~--~~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      .+ +++|++. ++..+  .+.+.+.++  ++|++|||+|.+ .+..++++++++|+++.+|...   .++...+..++++
T Consensus       189 ~~-~~lGa~~-i~~~~~~~~~~~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~G~iv~~g~~~---~~~~~~~~~~~~~  262 (343)
T 3gaz_A          189 YV-RDLGATP-IDASREPEDYAAEHTAGQGFDLVYDTLGGP-VLDASFSAVKRFGHVVSCLGWG---THKLAPLSFKQAT  262 (343)
T ss_dssp             HH-HHHTSEE-EETTSCHHHHHHHHHTTSCEEEEEESSCTH-HHHHHHHHEEEEEEEEESCCCS---CCCCHHHHHTTCE
T ss_pred             HH-HHcCCCE-eccCCCHHHHHHHHhcCCCceEEEECCCcH-HHHHHHHHHhcCCeEEEEcccC---ccccchhhhcCcE
Confidence            54 7899988 66222  234555554  799999999986 6899999999999999998754   4566777889999


Q ss_pred             EEEEecCCH-----------HHHHHHHHHHHcCCCccce--EEeecccHHHHHHHHHcCCC----ceeEEEEeCCcc
Q 027664          157 VGGSLIGGL-----------KETQEMIDFAAKHNIRADI--EVIPADYVNTAMERLAKADV----RYRFVIDVANTM  216 (220)
Q Consensus       157 ~~~~~~~~~-----------~~~~~~~~~i~~g~i~~~~--~~~~~~~~~~a~~~~~~~~~----~gk~vv~~~~~~  216 (220)
                      +.+++....           ++++++++++++|++++.+  ++|+++++++|++.+++++.    .||+|++++.+.
T Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~~~~  339 (343)
T 3gaz_A          263 YSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVEGHH  339 (343)
T ss_dssp             EEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCCCCBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC---
T ss_pred             EEEEEeccchhcccchHHHHHHHHHHHHHHHCCCcccCccCcEecHHHHHHHHHHHHcCCCcccccceEEEEecccc
Confidence            999765432           6689999999999999876  49999999999999998765    589999998653

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=8.2e-33  Score=221.50  Aligned_cols=210  Identities=12%  Similarity=0.182  Sum_probs=176.1

Q ss_pred             cccccceEeCCC-----------CCCccccccccchhhhhhhHHHhhcCCCCC-CEEEEEcc-chhHHHHHHHHHHCCCe
Q 027664            2 VADEHFVVRIPE-----------GAPLDATAPLLCAGITVYSPLRFYGLDKPG-MHVGVVGL-GGLGHVAVKFAKAMGVK   68 (220)
Q Consensus         2 ~v~~~~~~~ip~-----------~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~vlI~G~-g~~G~~~~~la~~~g~~   68 (220)
                      ++|++.++++|+           ++|+++||++++++.|||+++.+..++++| ++|||+|+ |++|++++|+|+.+|++
T Consensus       115 ~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~  194 (364)
T 1gu7_A          115 LGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFN  194 (364)
T ss_dssp             EEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCE
T ss_pred             ecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCE
Confidence            578899999998           899999999999999999999987678999 99999997 99999999999999999


Q ss_pred             EEEEeCCccc---hHHHHHHcCCCEEEcCCC---H---HHHHHhc----CCccEEEEcCCCcccHHHHHhccccCCEEEE
Q 027664           69 VTVISTSPSK---KSEAVERLGADSFLVSRD---Q---DEMQAAM----GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus        69 vi~~~~~~~~---~~~~~~~~g~~~~~~~~~---~---~~~~~~~----~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~  135 (220)
                      +++++++.++   +.+.++++|+++++|+.+   .   +.+++.+    +++|++|||+|+.. ...++++++++|+++.
T Consensus       195 vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~-~~~~~~~l~~~G~~v~  273 (364)
T 1gu7_A          195 SISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNNGLMLT  273 (364)
T ss_dssp             EEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTTCEEEE
T ss_pred             EEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchh-HHHHHHHhccCCEEEE
Confidence            9988876654   223447899999998764   2   2455555    38999999999875 4588999999999999


Q ss_pred             eCCCCC-CCCCCchhhhcCCeEEEEEecCC---------HHHHHHHHHHHHcCCCccce-EEeec---ccHHHHHHHHHc
Q 027664          136 LGAPEK-PLELPAFPLLTGRKIVGGSLIGG---------LKETQEMIDFAAKHNIRADI-EVIPA---DYVNTAMERLAK  201 (220)
Q Consensus       136 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~~g~i~~~~-~~~~~---~~~~~a~~~~~~  201 (220)
                      +|...+ ..+++...++.+++++.|++...         .++++++++++++|++++.+ .++++   +++++||+.+.+
T Consensus       274 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~~  353 (364)
T 1gu7_A          274 YGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVA  353 (364)
T ss_dssp             CCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHHHHHHH
T ss_pred             ecCCCCCCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHHHHHHHh
Confidence            997653 35566677788999999987643         35689999999999999875 66766   499999999998


Q ss_pred             CCCceeEEEEe
Q 027664          202 ADVRYRFVIDV  212 (220)
Q Consensus       202 ~~~~gk~vv~~  212 (220)
                      ++..||+|+++
T Consensus       354 ~~~~gKvvv~~  364 (364)
T 1gu7_A          354 NSKDGKQLITY  364 (364)
T ss_dssp             TGGGSCEEEEC
T ss_pred             CCCCceEEEeC
Confidence            88789999975

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-32  Score=221.97  Aligned_cols=212  Identities=19%  Similarity=0.161  Sum_probs=176.1

Q ss_pred             ccccc--ceEeCCCCCCccc----cccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 027664            2 VADEH--FVVRIPEGAPLDA----TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVIST   74 (220)
Q Consensus         2 ~v~~~--~~~~ip~~~s~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~   74 (220)
                      ++|++  .++++|+++++++    +|++++.+.|||+++.. ..+++|++|||+|+|++|++++|+|+++|+ +|++++.
T Consensus       140 ~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~  218 (398)
T 1kol_A          140 LVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL  218 (398)
T ss_dssp             EESSHHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             EecchhCeEEECCCCcchhhhcccccccccHHHHHHHHHHH-cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcC
Confidence            45665  7999999999988    78899999999999975 458999999999999999999999999999 7999988


Q ss_pred             CccchHHHHHHcCCCEEEcCCCH----HHHHHhcC--CccEEEEcCCCcc---------------cHHHHHhccccCCEE
Q 027664           75 SPSKKSEAVERLGADSFLVSRDQ----DEMQAAMG--TMDGIIDTVSAVH---------------PLMPLIGLLKSQGKL  133 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~--~~d~v~d~~g~~~---------------~~~~~~~~l~~~G~~  133 (220)
                      ++++++.+ +++|++ ++++.+.    +.+++.++  ++|+||||+|...               .++.++++++++|++
T Consensus       219 ~~~~~~~a-~~lGa~-~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~i  296 (398)
T 1kol_A          219 NPARLAHA-KAQGFE-IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKI  296 (398)
T ss_dssp             CHHHHHHH-HHTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEE
T ss_pred             CHHHHHHH-HHcCCc-EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEE
Confidence            88776655 789997 7777642    34556554  7999999999762               578999999999999


Q ss_pred             EEeCCCC-C------------CCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCc---cce-EEeecccHHHHH
Q 027664          134 VLLGAPE-K------------PLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIR---ADI-EVIPADYVNTAM  196 (220)
Q Consensus       134 v~~g~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~---~~~-~~~~~~~~~~a~  196 (220)
                      +.+|... +            ...++...++.+++++.++.....+.++++++++.+|+++   +.+ ++|+|+++++||
T Consensus       297 v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~  376 (398)
T 1kol_A          297 GIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGY  376 (398)
T ss_dssp             EECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSCCHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHH
T ss_pred             EEeccccCCcccccccccccccccccHHHHhhcccEEEecccChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHH
Confidence            9999752 1            1345556678899999987655567788999999999998   334 899999999999


Q ss_pred             HHHHcCCCceeEEEEeCCccc
Q 027664          197 ERLAKADVRYRFVIDVANTMK  217 (220)
Q Consensus       197 ~~~~~~~~~gk~vv~~~~~~~  217 (220)
                      +.+.+++. +|+|++++...+
T Consensus       377 ~~~~~~~~-gKvvi~~~~~~~  396 (398)
T 1kol_A          377 GEFDAGVP-KKFVIDPHKTFS  396 (398)
T ss_dssp             HHHHHTCS-CEEEECTTCSSC
T ss_pred             HHHhCCCc-eEEEEEeCCccc
Confidence            99998887 999999976543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=3.6e-33  Score=225.94  Aligned_cols=211  Identities=18%  Similarity=0.187  Sum_probs=177.3

Q ss_pred             ccccc--ceEeCCCCCCccc----cccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 027664            2 VADEH--FVVRIPEGAPLDA----TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVIST   74 (220)
Q Consensus         2 ~v~~~--~~~~ip~~~s~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~   74 (220)
                      ++|++  .++++|+++|+++    ||++++.+.|||++++. ..+++|++|||+|+|++|++++|+|+++|+ +|++++.
T Consensus       140 ~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  218 (398)
T 2dph_A          140 LVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGCVS-AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQ  218 (398)
T ss_dssp             EESSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             EeccccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45665  7999999999998    88999999999999965 458999999999999999999999999999 9999999


Q ss_pred             CccchHHHHHHcCCCEEEcCCCH----HHHHHhcC--CccEEEEcCCCcc--------------cHHHHHhccccCCEEE
Q 027664           75 SPSKKSEAVERLGADSFLVSRDQ----DEMQAAMG--TMDGIIDTVSAVH--------------PLMPLIGLLKSQGKLV  134 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~--~~d~v~d~~g~~~--------------~~~~~~~~l~~~G~~v  134 (220)
                      ++++++.+ +++|++ ++|+.+.    +.+++.++  ++|+||||+|...              .++.++++++++|+++
T Consensus       219 ~~~~~~~a-~~lGa~-~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv  296 (398)
T 2dph_A          219 NPERLKLL-SDAGFE-TIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIG  296 (398)
T ss_dssp             CHHHHHHH-HTTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEE
T ss_pred             CHHHHHHH-HHcCCc-EEcCCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEE
Confidence            98777655 789996 7887653    34555554  7999999999763              4789999999999999


Q ss_pred             EeCCCC-------------CCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCc--c--ce-EEeecccHHHHH
Q 027664          135 LLGAPE-------------KPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIR--A--DI-EVIPADYVNTAM  196 (220)
Q Consensus       135 ~~g~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~--~--~~-~~~~~~~~~~a~  196 (220)
                      .+|...             ....++...++.+++++.++.....++++++++++++|+++  +  .+ ++|+|+++++||
T Consensus       297 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~  376 (398)
T 2dph_A          297 IPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGY  376 (398)
T ss_dssp             CCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCCGGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHH
T ss_pred             EeccccccccccccccccCCcccccHHHHhhcCCEEEEeccCcHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHH
Confidence            999762             12345555678899999988766667799999999999999  6  35 899999999999


Q ss_pred             HHHHcCCCceeEEEEeCCcc
Q 027664          197 ERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       197 ~~~~~~~~~gk~vv~~~~~~  216 (220)
                      +.+.+++. +|+|+++++..
T Consensus       377 ~~~~~~~~-gKvvv~~~~~~  395 (398)
T 2dph_A          377 AKFDKGSP-AKFVIDPHGML  395 (398)
T ss_dssp             HHHHTTCS-CEEEECTTSCC
T ss_pred             HHHhcCCc-eEEEEecCccc
Confidence            99998887 99999986543

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=5.5e-33  Score=221.32  Aligned_cols=206  Identities=13%  Similarity=0.145  Sum_probs=170.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCC-CEEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCccch
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG-MHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~vlI~G-~g~~G~~~~~la~~~g~~vi~~~~~~~~~   79 (220)
                      ++|++.++++|+++|+++||++++.++|||+++....  ++| +++||+| +|++|++++|+|++.|++|++++++++++
T Consensus       125 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~--~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~  202 (349)
T 3pi7_A          125 VAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVK--QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQI  202 (349)
T ss_dssp             EEEGGGEEECCTTCCC--GGGSSHHHHHHHHHHHHHH--HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGH
T ss_pred             eechHHeEECCCCCCHHHHhhccccHHHHHHHHHHHh--hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            5788999999999999999999999999997776665  555 7899986 59999999999999999999999998877


Q ss_pred             HHHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCc-hhhhc
Q 027664           80 SEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPA-FPLLT  152 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~-~~~~~  152 (220)
                      +.+ +++|++.++|+.+.+   .+++.++  ++|++|||+|.+ .+..++++++++|+++.+|.... ...++. ..++.
T Consensus       203 ~~~-~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~  280 (349)
T 3pi7_A          203 ALL-KDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGP-LASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIF  280 (349)
T ss_dssp             HHH-HHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCHH-HHHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHH
T ss_pred             HHH-HHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCCh-hHHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhc
Confidence            666 689999999987754   3445443  899999999987 47889999999999999997654 456777 78889


Q ss_pred             CCeEEEEEecCC---------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          153 GRKIVGGSLIGG---------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       153 ~~~~~~~~~~~~---------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      +++++.|++...         .+.++++++++++|++++.+ ++|+++++++|++.+. +...||+|+++
T Consensus       281 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~-~~~~gKvvl~p  349 (349)
T 3pi7_A          281 QHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWSTDVTAVVPLAEAIAWVPAEL-TKPNGKVFIRP  349 (349)
T ss_dssp             SCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSCCC-CCEEEEHHHHHHHHHHHH-TSSSSCEEEEC
T ss_pred             cccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCcccccceEEcHHHHHHHHHHHh-CCCCceEEEeC
Confidence            999999987654         35678888899999999888 8999999999999544 45669999975

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=1.2e-32  Score=219.63  Aligned_cols=210  Identities=21%  Similarity=0.260  Sum_probs=178.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       122 ~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~  201 (354)
T 2j8z_A          122 TVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQ  201 (354)
T ss_dssp             EEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             EeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            57889999999999999999999999999999976667899999999995 99999999999999999999999987776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCc-hhhhcC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPA-FPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~-~~~~~~  153 (220)
                      .+ +++|++.++|+.+.+   .+.+.++  ++|++|||+|.. .+..++++++++|+++.+|...+. .+++. ..++.+
T Consensus       202 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~  279 (354)
T 2j8z_A          202 MA-EKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGS-YWEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFK  279 (354)
T ss_dssp             HH-HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCGG-GHHHHHHHEEEEEEEEECCCTTCSCCCSCHHHHHHHT
T ss_pred             HH-HHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCch-HHHHHHHhccCCCEEEEEeccCCCccCCChhHHHHhC
Confidence            66 789999999887643   3444443  799999999987 689999999999999999986543 56676 777889


Q ss_pred             CeEEEEEecCCH--H-------H-HHHHHHHHHcC---CCccce-EEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          154 RKIVGGSLIGGL--K-------E-TQEMIDFAAKH---NIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       154 ~~~~~~~~~~~~--~-------~-~~~~~~~i~~g---~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      ++++.|++....  .       . ++++++++++|   ++++.+ ++|+++++++|++.+++++..||+|++++
T Consensus       280 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  353 (354)
T 2j8z_A          280 RGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELP  353 (354)
T ss_dssp             TCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEECC
T ss_pred             CCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence            999999876431  1       1 24577888999   888877 89999999999999998887899999874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=4.7e-32  Score=215.23  Aligned_cols=212  Identities=13%  Similarity=0.152  Sum_probs=173.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++.++|||+++.+...+++|++|||+|+ |++|++++|+|+..|++|+++++++++++
T Consensus       104 ~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  183 (340)
T 3gms_A          104 KTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE  183 (340)
T ss_dssp             EEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHH
T ss_pred             EcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            57899999999999999999999999999999987777999999999998 69999999999999999999999988776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhh-cCC
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL-TGR  154 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~-~~~  154 (220)
                      .+ +++|+++++|+.+.+   .+.+.++  ++|++|||+|.+. ....+++++++|+++.+|...+ ..++...+. ...
T Consensus       184 ~~-~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~  260 (340)
T 3gms_A          184 EL-LRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPD-GNELAFSLRPNGHFLTIGLLSG-IQVNWAEIVTKAK  260 (340)
T ss_dssp             HH-HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTS-CCCCHHHHHHTSC
T ss_pred             HH-HhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHHhcCCCEEEEEeecCC-CCCCHHHhhhccc
Confidence            66 679999999987643   4555554  7999999999874 5667799999999999998654 234444433 244


Q ss_pred             eEEEEEecC----------CHHHHHHHHHHHHcCCCccc-e-EEeecccHHHHHHHHHcCCC-ceeEEEEeCCcc
Q 027664          155 KIVGGSLIG----------GLKETQEMIDFAAKHNIRAD-I-EVIPADYVNTAMERLAKADV-RYRFVIDVANTM  216 (220)
Q Consensus       155 ~~~~~~~~~----------~~~~~~~~~~~i~~g~i~~~-~-~~~~~~~~~~a~~~~~~~~~-~gk~vv~~~~~~  216 (220)
                      +.+..+...          ..++++++++++++|++++. + ++|+++++++||+.+++++. .||+++++.++-
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~~~  335 (340)
T 3gms_A          261 VHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAEKTKGKVFLTSYEGH  335 (340)
T ss_dssp             CEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC---
T ss_pred             ceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCccccccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEeccc
Confidence            555554321          13568899999999999974 5 89999999999999999874 499999997653

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.7e-32  Score=215.03  Aligned_cols=208  Identities=21%  Similarity=0.292  Sum_probs=174.9

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       130 ~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~  209 (351)
T 1yb5_A          130 LAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQK  209 (351)
T ss_dssp             EEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             EECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHH
Confidence            57889999999999999999999999999999987677899999999997 99999999999999999999999987776


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCe
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRK  155 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      .+ +++|++.++|+.+.+   .+.+.++  ++|++|||+|.. .+..++++++++|+++.+|.. +..+++...++.+++
T Consensus       210 ~~-~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~~-~~~~~~~~l~~~G~iv~~g~~-~~~~~~~~~~~~~~~  286 (351)
T 1yb5_A          210 IV-LQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANV-NLSKDLSLLSHGGRVIVVGSR-GTIEINPRDTMAKES  286 (351)
T ss_dssp             HH-HHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHHH-HHHHHHHHEEEEEEEEECCCC-SCEEECTHHHHTTTC
T ss_pred             HH-HHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCChH-HHHHHHHhccCCCEEEEEecC-CCCccCHHHHHhCCc
Confidence            44 789999999887654   3444443  799999999986 688999999999999999964 344566677888999


Q ss_pred             EEEEEec--CCHHHH----HHHHHHHHcCCCccce-EEeecccHHHHHHH-HHcCCCceeEEEEe
Q 027664          156 IVGGSLI--GGLKET----QEMIDFAAKHNIRADI-EVIPADYVNTAMER-LAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~~~~~~~--~~~~~~----~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~-~~~~~~~gk~vv~~  212 (220)
                      ++.|+..  ...+++    +.+.+++.+|++++.+ ++|+++++++|++. +++++..||+|+++
T Consensus       287 ~i~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          287 SIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             EEEECCGGGCCHHHHHHHHHHHHHHHHHTCCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             EEEEEEeecCCHHHHHHHHHHHHHHHHCCCccCccceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            9999853  344444    4455677889999888 89999999999998 66666679999864

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.1e-32  Score=215.32  Aligned_cols=209  Identities=18%  Similarity=0.230  Sum_probs=169.7

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhh--cCCCCCC-EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKPGM-HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~--~~~~~~~-~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ++|++.++++|+++|+++||++++++.|||.++...  ..+++|+ +|||+|+ |++|++++|+|+..|++|++++++++
T Consensus       106 ~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~  185 (328)
T 1xa0_A          106 RLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA  185 (328)
T ss_dssp             EECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             EechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            578899999999999999999999999999887532  3478886 8999997 99999999999999999999999988


Q ss_pred             chHHHHHHcCCCEEEcCCCHH--HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcC
Q 027664           78 KKSEAVERLGADSFLVSRDQD--EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTG  153 (220)
Q Consensus        78 ~~~~~~~~~g~~~~~~~~~~~--~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~  153 (220)
                      +++.+ +++|+++++|+.+.+  .+++..+ ++|++|||+|.. .+..++++++++|+++.+|...+ ..+++...++.+
T Consensus       186 ~~~~~-~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~  263 (328)
T 1xa0_A          186 EHDYL-RVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR-TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILR  263 (328)
T ss_dssp             CHHHH-HHTTCSEEEECC---------CCSCCEEEEEECSTTT-THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHT
T ss_pred             HHHHH-HHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcHH-HHHHHHHhhccCCEEEEEeecCCCCCCCchhhhhhc
Confidence            77666 689999999887642  2344443 799999999986 79999999999999999998654 356666777889


Q ss_pred             CeEEEEEec--CCH----HHHHHHHHHHHcCCCccceEEeecccHHHHHHHHHcCCCceeEEEEeC
Q 027664          154 RKIVGGSLI--GGL----KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       154 ~~~~~~~~~--~~~----~~~~~~~~~i~~g~i~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~~  213 (220)
                      ++++.|+..  ...    +.++.+.+++.+| +++..++|+|+++++|++.+++++..||+|++++
T Consensus       264 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  328 (328)
T 1xa0_A          264 GVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-LERIAQEISLAELPQALKRILRGELRGRTVVRLA  328 (328)
T ss_dssp             TCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-HHHHEEEEEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred             CceEEEEecccCCHHHHHHHHHHHHHHHHcC-CceeeeEeCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence            999999742  232    3356666666677 6664489999999999999998888899999863

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=1.2e-32  Score=219.96  Aligned_cols=205  Identities=19%  Similarity=0.205  Sum_probs=175.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCC------CEEEEEccchhHHHH-HHHH-HHCCCe-EEEE
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG------MHVGVVGLGGLGHVA-VKFA-KAMGVK-VTVI   72 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~------~~vlI~G~g~~G~~~-~~la-~~~g~~-vi~~   72 (220)
                      ++|++.++++|+++| ++ |+++.++.|||++++.. ++++|      ++|||+|+|++|+++ +|+| +++|++ |+++
T Consensus       129 ~v~~~~~~~iP~~~~-~~-aal~~~~~ta~~al~~~-~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~  205 (357)
T 2b5w_A          129 TSPEKYLVRIPRSQA-EL-GFLIEPISITEKALEHA-YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCL  205 (357)
T ss_dssp             EEEGGGEEECCGGGS-TT-GGGHHHHHHHHHHHHHH-HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred             EEchHHeEECCCCcc-hh-hhhhchHHHHHHHHHhc-CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            578899999999999 54 56888999999999654 47899      999999999999999 9999 999996 9999


Q ss_pred             eCCcc---chHHHHHHcCCCEEEcCCCHH--HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC-CCCCCC
Q 027664           73 STSPS---KKSEAVERLGADSFLVSRDQD--EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KPLELP  146 (220)
Q Consensus        73 ~~~~~---~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~  146 (220)
                      +++++   +++.+ +++|++++ |+.+.+  .+++..+++|+||||+|....++.++++++++|+++.+|... ...+++
T Consensus       206 ~~~~~~~~~~~~~-~~lGa~~v-~~~~~~~~~i~~~~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~  283 (357)
T 2b5w_A          206 GRRDRPDPTIDII-EELDATYV-DSRQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVD  283 (357)
T ss_dssp             ECCCSSCHHHHHH-HHTTCEEE-ETTTSCGGGHHHHSCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCC
T ss_pred             eCCcccHHHHHHH-HHcCCccc-CCCccCHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceec
Confidence            99887   66655 78999998 876532  155553389999999998767899999999999999999876 456777


Q ss_pred             chhh----hcCCeEEEEEecCCHHHHHHHHHHHHcC--C-Cccce-EEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          147 AFPL----LTGRKIVGGSLIGGLKETQEMIDFAAKH--N-IRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       147 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~g--~-i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      ...+    +.+++++.|++....++++++++++++|  + +.+.+ ++|+|+++++|++.+   ...+|+|+++++
T Consensus       284 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~A~~~~---~~~gKvvi~~~~  356 (357)
T 2b5w_A          284 AGAFHREMVLHNKALVGSVNSHVEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDD---DTTIKTAIEFST  356 (357)
T ss_dssp             HHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHHHHSCHHHHHHHEEEEEEGGGGGGGGCCS---TTCCEEEEECCC
T ss_pred             HHHHhHHHHhCCeEEEEeccCCHHHHHHHHHHHHhCchhhhhhhcceeecHHHHHHHHHHh---CCCceEEEEecC
Confidence            7777    8899999999888889999999999999  8 57777 899999999999987   346999999864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.98  E-value=3.6e-32  Score=220.41  Aligned_cols=210  Identities=16%  Similarity=0.196  Sum_probs=177.3

Q ss_pred             cccccceEeCCCCCCc------cccccccchhhhhhhHHHhh-cCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEe
Q 027664            2 VADEHFVVRIPEGAPL------DATAPLLCAGITVYSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVIS   73 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~------~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~   73 (220)
                      ++|++.++++|+++++      .++|+++..+.|||+++... ..+++|++|||+|+|++|++++|+|+++|+ +|++++
T Consensus       166 ~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  245 (404)
T 3ip1_A          166 KVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSE  245 (404)
T ss_dssp             EEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            5788999999999874      44888999999999998654 368999999999999999999999999999 899998


Q ss_pred             CCccchHHHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCc-ccHHHHHhcc----ccCCEEEEeCCCCCCC
Q 027664           74 TSPSKKSEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAV-HPLMPLIGLL----KSQGKLVLLGAPEKPL  143 (220)
Q Consensus        74 ~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~-~~~~~~~~~l----~~~G~~v~~g~~~~~~  143 (220)
                      .++++++.+ +++|+++++|+.+.+   .+++.++  ++|++|||+|.+ ..+..+.+++    +++|+++.+|...+..
T Consensus       246 ~~~~~~~~~-~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~  324 (404)
T 3ip1_A          246 PSEVRRNLA-KELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKI  324 (404)
T ss_dssp             SCHHHHHHH-HHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCE
T ss_pred             CCHHHHHHH-HHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCC
Confidence            888766555 789999999987643   4556654  799999999987 3456666677    9999999999887777


Q ss_pred             CCCchhhhcCCeEEEEEecCC-HHHHHHHHHHHHcCCCcc--ce-EEeecccHHHHHHHHHcCCCceeEEEEeCCccc
Q 027664          144 ELPAFPLLTGRKIVGGSLIGG-LKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDVANTMK  217 (220)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~g~i~~--~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~~~  217 (220)
                      +++...++.+++++.|++... ..+++.+++++++| +++  .+ ++|+|+++++||+.+.    .||+|++++++.+
T Consensus       325 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~----~GKvvl~~~~~~~  397 (404)
T 3ip1_A          325 PLTGEVFQVRRAQIVGSQGHSGHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ----TDKSLVKVTMLNE  397 (404)
T ss_dssp             EECHHHHHHTTCEEEECCCCCSTTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT----TCTTCSCEEEECC
T ss_pred             cccHHHHhccceEEEEecCCCchHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh----CCcEEEecCCCCC
Confidence            888888999999999998644 57899999999999 765  35 8999999999999887    5899998876543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.98  E-value=1.8e-31  Score=213.19  Aligned_cols=212  Identities=13%  Similarity=0.143  Sum_probs=178.7

Q ss_pred             cccccceEeCCCCC-----CccccccccchhhhhhhHHHhhcCCCCC--CEEEEEcc-chhHHHHHHHHHHCCC-eEEEE
Q 027664            2 VADEHFVVRIPEGA-----PLDATAPLLCAGITVYSPLRFYGLDKPG--MHVGVVGL-GGLGHVAVKFAKAMGV-KVTVI   72 (220)
Q Consensus         2 ~v~~~~~~~ip~~~-----s~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~G~-g~~G~~~~~la~~~g~-~vi~~   72 (220)
                      ++|++.++++|+++     +++ +|++++++.|||+++.+..++++|  ++|||+|+ |++|++++|+++..|+ +|+++
T Consensus       114 ~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~  192 (357)
T 2zb4_A          114 ILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGI  192 (357)
T ss_dssp             EEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEE
T ss_pred             EEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            57889999999999     655 778999999999999766678999  99999998 9999999999999999 99999


Q ss_pred             eCCccchHHHHHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCc
Q 027664           73 STSPSKKSEAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPA  147 (220)
Q Consensus        73 ~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~  147 (220)
                      ++++++++.+.+.+|++.++|+.+.+   .+.+.++ ++|++|||+|.. .++.++++++++|+++.+|..... ..++.
T Consensus       193 ~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~  271 (357)
T 2zb4_A          193 CGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVGGN-ISDTVISQMNENSHIILCGQISQYNKDVPY  271 (357)
T ss_dssp             ESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEESCCHH-HHHHHHHTEEEEEEEEECCCGGGTTSCCCS
T ss_pred             eCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEECCCHH-HHHHHHHHhccCcEEEEECCccccccCccc
Confidence            99988777775559999999887643   3444444 799999999975 689999999999999999876431 22221


Q ss_pred             ---------hhhhcCCeEEEEEecCC-----HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          148 ---------FPLLTGRKIVGGSLIGG-----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       148 ---------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                               ..++.+++++.+++...     .++++++++++++|++++.+ .+|+|+++++|++.+.+++..||+|+++
T Consensus       272 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  351 (357)
T 2zb4_A          272 PPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCI  351 (357)
T ss_dssp             SCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCCEEEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             cccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCccceecCHHHHHHHHHHHHcCCCCceEEEEE
Confidence                     45678899999987643     56789999999999999887 7899999999999999888789999999


Q ss_pred             CCc
Q 027664          213 ANT  215 (220)
Q Consensus       213 ~~~  215 (220)
                      +++
T Consensus       352 ~~~  354 (357)
T 2zb4_A          352 SEE  354 (357)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            765

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.98  E-value=2.4e-31  Score=213.33  Aligned_cols=212  Identities=13%  Similarity=0.101  Sum_probs=171.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhh-cCC-----------CCCCEEEEEcc-chhHHHHHHHHHHCCCe
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY-GLD-----------KPGMHVGVVGL-GGLGHVAVKFAKAMGVK   68 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~-~~~-----------~~~~~vlI~G~-g~~G~~~~~la~~~g~~   68 (220)
                      ++|++.++++|+++++++||++++++.|||+++.+. .++           ++|++|||+|+ |++|++++|+|++.|++
T Consensus       112 ~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~  191 (371)
T 3gqv_A          112 VTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYI  191 (371)
T ss_dssp             ECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCE
T ss_pred             EEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCE
Confidence            578999999999999999999999999999999776 433           89999999998 99999999999999999


Q ss_pred             EEEEeCCccchHHHHHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhcc-ccCCEEEEeCCCCCC-
Q 027664           69 VTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLL-KSQGKLVLLGAPEKP-  142 (220)
Q Consensus        69 vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~-  142 (220)
                      |+++. ++++++ +++++|+++++|+.+.+   .+++.++ ++|++|||+|++..++.+++++ +++|+++.+|..... 
T Consensus       192 Vi~~~-~~~~~~-~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~  269 (371)
T 3gqv_A          192 PIATC-SPHNFD-LAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHA  269 (371)
T ss_dssp             EEEEE-CGGGHH-HHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC--
T ss_pred             EEEEe-CHHHHH-HHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCcccc
Confidence            99887 555555 55899999999988754   4555554 6999999999976789999999 589999999965431 


Q ss_pred             -----CCC---CchhhhcCCeEEEEEecC--CH-------HHHHHHHHHHHcCCCccce---EEeecccHHHHHHHHHcC
Q 027664          143 -----LEL---PAFPLLTGRKIVGGSLIG--GL-------KETQEMIDFAAKHNIRADI---EVIPADYVNTAMERLAKA  202 (220)
Q Consensus       143 -----~~~---~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~i~~g~i~~~~---~~~~~~~~~~a~~~~~~~  202 (220)
                           ...   ....++.+++++.|++..  ..       +.++++++++++|++++.+   +.|+|+++++||+.+.++
T Consensus       270 ~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g  349 (371)
T 3gqv_A          270 ATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKG  349 (371)
T ss_dssp             -CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTT
T ss_pred             ccccccceeeeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcC
Confidence                 111   123567788888876543  22       2245788999999999874   569999999999999999


Q ss_pred             CCce-eEEEEeCCc
Q 027664          203 DVRY-RFVIDVANT  215 (220)
Q Consensus       203 ~~~g-k~vv~~~~~  215 (220)
                      +..| |+|+++++.
T Consensus       350 ~~~Gkkvvv~~~~~  363 (371)
T 3gqv_A          350 ELSGEKLVVRLEGP  363 (371)
T ss_dssp             CCSSCEEEEEECCC
T ss_pred             CCceEEEEEEeCCc
Confidence            8887 666777654

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.98  E-value=7.7e-33  Score=218.91  Aligned_cols=209  Identities=16%  Similarity=0.229  Sum_probs=172.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhh--cCCCCCC-EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKPGM-HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~--~~~~~~~-~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ++|++.++++|+++|+++||++++++.|||.++...  ..+++|+ +|||+|+ |++|++++|+|+..|++|++++++++
T Consensus       107 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~  186 (330)
T 1tt7_A          107 SVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE  186 (330)
T ss_dssp             EECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred             EecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578899999999999999999999999999887532  3478886 9999997 99999999999999999999999987


Q ss_pred             chHHHHHHcCCCEEEcCCCHH--HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcC
Q 027664           78 KKSEAVERLGADSFLVSRDQD--EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTG  153 (220)
Q Consensus        78 ~~~~~~~~~g~~~~~~~~~~~--~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~  153 (220)
                      +++.+ +++|+++++|+.+.+  .+++..+ ++|++|||+|++ .+..++++++++|+++.+|...+ ..+++...++.+
T Consensus       187 ~~~~~-~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~  264 (330)
T 1tt7_A          187 AADYL-KQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGK-QLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILR  264 (330)
T ss_dssp             THHHH-HHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTH-HHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTS
T ss_pred             HHHHH-HHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcHH-HHHHHHHhhcCCCEEEEEecCCCCccCcchHHHHhc
Confidence            77665 679999998865331  1222233 799999999986 78999999999999999998654 345666677889


Q ss_pred             CeEEEEEec--CCH----HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          154 RKIVGGSLI--GGL----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~~~~~~~--~~~----~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++++.|++.  ...    +.++.+.+++++|++++.+ ++|+|+++++|++.+++++..||+|+++
T Consensus       265 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          265 GVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             CCEEEECCSSSCCHHHHHHHHHHTTTTSCCSCSTTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             CeEEEEEeccccCHHHHHHHHHHHHHHHhcCCcccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            999999743  222    3456666777789998888 8999999999999998888789999864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.98  E-value=1.3e-31  Score=211.70  Aligned_cols=209  Identities=20%  Similarity=0.227  Sum_probs=176.0

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|++|+++++++++.+
T Consensus       100 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~  179 (327)
T 1qor_A          100 NIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQ  179 (327)
T ss_dssp             EEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHH
T ss_pred             EecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            57889999999999999999999999999999986667899999999995 99999999999999999999999887766


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcC-
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTG-  153 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~-  153 (220)
                      .+ +++|++.++|+.+.+   .+.+.++  ++|++|||+| ...++.++++++++|+++.+|...+. ..++...++.+ 
T Consensus       180 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~  257 (327)
T 1qor_A          180 SA-LKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKG  257 (327)
T ss_dssp             HH-HHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTT
T ss_pred             HH-HHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc-hHHHHHHHHHhcCCCEEEEEecCCCCCCccCHHHHhhcc
Confidence            66 568999999877643   3444443  7999999999 44799999999999999999986543 45677777777 


Q ss_pred             CeEEEEEec----CC----HHHHHHHHHHHHcCCCccce---EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          154 RKIVGGSLI----GG----LKETQEMIDFAAKHNIRADI---EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~~~~~~~----~~----~~~~~~~~~~i~~g~i~~~~---~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ++++.+...    ..    .+.++++++++++|++++.+   ++|+|+++++|++.+++++..||+|+++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          258 SLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             SCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred             ceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCcccccccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            787775432    11    34578999999999999865   5999999999999999888889999864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.97  E-value=4.6e-31  Score=212.09  Aligned_cols=209  Identities=21%  Similarity=0.246  Sum_probs=168.2

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcC----CCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL----DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~----~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      ++|++.++++|+++|+++||++++++.|||+++....+    +++|++|||+|+ |++|++++|+|+..|++|++++ ++
T Consensus       139 ~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~  217 (375)
T 2vn8_A          139 VVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQ  217 (375)
T ss_dssp             EEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CG
T ss_pred             EEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-Ch
Confidence            57889999999999999999999999999999976666    799999999995 9999999999999999999888 55


Q ss_pred             cchHHHHHHcCCCEEEcCCCHHHHHHhc--CCccEEEEcCCCc-ccHHHHHhccccCCEEEEeCCCCCC-C---CCCc--
Q 027664           77 SKKSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLGAPEKP-L---ELPA--  147 (220)
Q Consensus        77 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~~~~~-~---~~~~--  147 (220)
                      ++++. ++++|++.++|+.+.+..+++.  .++|++|||+|.. ..+..++++++++|+++.+|..... .   .++.  
T Consensus       218 ~~~~~-~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~  296 (375)
T 2vn8_A          218 DASEL-VRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGM  296 (375)
T ss_dssp             GGHHH-HHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHH
T ss_pred             HHHHH-HHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchh
Confidence            55554 4889999999987755444443  4899999999987 4458899999999999999864321 0   0100  


Q ss_pred             ----hhhhc-------CCeEEEEEec-CCHHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          148 ----FPLLT-------GRKIVGGSLI-GGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       148 ----~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                          ..++.       +...+.+.+. ...+.++++++++++|++++.+ ++|+|+++++|++.+++++..||+|+++
T Consensus       297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          297 LQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred             heeehhhccccccccccCcceEEEEeCCCHHHHHHHHHHHHCCCcccCcCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence                01112       4445544332 3456789999999999999888 8999999999999999988789999975

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.97  E-value=5.9e-31  Score=209.33  Aligned_cols=211  Identities=17%  Similarity=0.142  Sum_probs=175.0

Q ss_pred             cccccc--eEeCCC---CCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC
Q 027664            2 VADEHF--VVRIPE---GAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus         2 ~v~~~~--~~~ip~---~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      +++++.  ++++|+   +++++ +|++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|++|++++++
T Consensus       111 ~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~  189 (345)
T 2j3h_A          111 VITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGS  189 (345)
T ss_dssp             EECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            355555  899996   45655 67899999999999977667899999999997 999999999999999999999999


Q ss_pred             ccchHHHHHHcCCCEEEcCCCH----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC------CCC
Q 027664           76 PSKKSEAVERLGADSFLVSRDQ----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK------PLE  144 (220)
Q Consensus        76 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~  144 (220)
                      +++++.+.+++|++.++|+.+.    +.+++.++ ++|++|||+|.. .++.++++++++|+++.+|....      ...
T Consensus       190 ~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~  268 (345)
T 2j3h_A          190 KEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGK-MLDAVLVNMNMHGRIAVCGMISQYNLENQEGV  268 (345)
T ss_dssp             HHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEECCCGGGTTCSSCCCB
T ss_pred             HHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCCHH-HHHHHHHHHhcCCEEEEEccccccccCCcccc
Confidence            8877766447999999887652    34555444 799999999985 78999999999999999987543      234


Q ss_pred             CCchhhhcCCeEEEEEecCCH-----HHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeCC
Q 027664          145 LPAFPLLTGRKIVGGSLIGGL-----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~  214 (220)
                      ++...++.+++++.|++.+..     +.++++++++++|++++.+ ++|+|+++++|++.+++++..||+|+.+++
T Consensus       269 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  344 (345)
T 2j3h_A          269 HNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVVAR  344 (345)
T ss_dssp             SCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEEEESGGGSHHHHHHHHTTCCSSEEEEESSC
T ss_pred             ccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCcCcccccCCHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            566677889999999765432     3488899999999999877 589999999999999998888999999865

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.97  E-value=4.1e-30  Score=203.56  Aligned_cols=209  Identities=18%  Similarity=0.179  Sum_probs=174.6

Q ss_pred             cccccceEeCCCC----CCccc-cccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC
Q 027664            2 VADEHFVVRIPEG----APLDA-TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus         2 ~v~~~~~~~ip~~----~s~~~-aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      ++|++.++++|++    +++++ +|++++++.|||+++.+..++++|++|||+|+ |++|++++|+++..|++|++++++
T Consensus       100 ~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~  179 (333)
T 1v3u_A          100 ISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS  179 (333)
T ss_dssp             EESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            5788999999997    88888 48899999999999977767899999999997 999999999999999999999998


Q ss_pred             ccchHHHHHHcCCCEEEcCCC-HH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC------CC-
Q 027664           76 PSKKSEAVERLGADSFLVSRD-QD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK------PL-  143 (220)
Q Consensus        76 ~~~~~~~~~~~g~~~~~~~~~-~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~-  143 (220)
                      +++.+.+ +++|++.++|..+ .+   .+.+..+ ++|++||++|.. .+..++++++++|+++.+|....      .. 
T Consensus       180 ~~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  257 (333)
T 1v3u_A          180 DEKIAYL-KQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGE-FLNTVLSQMKDFGKIAICGAISVYNRMDQLPP  257 (333)
T ss_dssp             HHHHHHH-HHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEECCCCC-------CCB
T ss_pred             HHHHHHH-HhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCChH-HHHHHHHHHhcCCEEEEEeccccccCCCCCCC
Confidence            8777766 7899998888866 32   3444443 799999999986 68999999999999999997653      11 


Q ss_pred             CCCchhhhcCCeEEEEEecCC------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          144 ELPAFPLLTGRKIVGGSLIGG------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ..+...++.+++++.|++.+.      .+.++++++++++|++++.+ .+++|+++++|++.+++++..||+|+++
T Consensus       258 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          258 GPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             CCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             CcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCccccccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            235556788999999987543      35678899999999999887 6789999999999999888789999864

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.97  E-value=2.7e-31  Score=212.79  Aligned_cols=207  Identities=19%  Similarity=0.229  Sum_probs=172.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHH--h--hcCCC--C-------CCEEEEEccchhHHHHHHHHHHCCCe
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR--F--YGLDK--P-------GMHVGVVGLGGLGHVAVKFAKAMGVK   68 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~--~--~~~~~--~-------~~~vlI~G~g~~G~~~~~la~~~g~~   68 (220)
                      ++|++.++++|+++| ++|| ++..+.|||+++.  .  ..+++  +       |++|||+|+|++|++++|+++..|++
T Consensus       129 ~v~~~~~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~  206 (366)
T 2cdc_A          129 YDDPKYLVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLE  206 (366)
T ss_dssp             EECGGGEEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTCE
T ss_pred             EechHHeEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCCE
Confidence            578899999999999 8765 7889999999998  3  44578  8       99999999999999999999999999


Q ss_pred             EEEEeCCc---cchHHHHHHcCCCEEEcCCC--HHHHHHhcCCccEEEEcCCCcccH-HHHHhccccCCEEEEeCCCCCC
Q 027664           69 VTVISTSP---SKKSEAVERLGADSFLVSRD--QDEMQAAMGTMDGIIDTVSAVHPL-MPLIGLLKSQGKLVLLGAPEKP  142 (220)
Q Consensus        69 vi~~~~~~---~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~d~v~d~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~  142 (220)
                      |+++++++   ++++. ++++|++.+ | .+  .+.+.+..+++|++|||+|....+ +.++++++++|+++.+|.....
T Consensus       207 Vi~~~~~~~~~~~~~~-~~~~ga~~v-~-~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~  283 (366)
T 2cdc_A          207 VWMANRREPTEVEQTV-IEETKTNYY-N-SSNGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSG  283 (366)
T ss_dssp             EEEEESSCCCHHHHHH-HHHHTCEEE-E-CTTCSHHHHHHHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSC
T ss_pred             EEEEeCCccchHHHHH-HHHhCCcee-c-hHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCC
Confidence            99999987   66654 478999888 7 54  123333225899999999987667 8999999999999999987654


Q ss_pred             -CCCCchh---hhcCCeEEEEEecCCHHHHHHHHHHHHcCC------Cccce-EEeecccHHHHHHHH-HcCCCceeEEE
Q 027664          143 -LELPAFP---LLTGRKIVGGSLIGGLKETQEMIDFAAKHN------IRADI-EVIPADYVNTAMERL-AKADVRYRFVI  210 (220)
Q Consensus       143 -~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~------i~~~~-~~~~~~~~~~a~~~~-~~~~~~gk~vv  210 (220)
                       .+++...   ++.+++++.|+..+..++++++++++++|+      +.+.+ ++|+|+++++|++.+ .++...+|+|+
T Consensus       284 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~gKvvi  363 (366)
T 2cdc_A          284 SVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRI  363 (366)
T ss_dssp             EEEEEHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCCEEEE
T ss_pred             ccccChhhhHHHHhcCcEEEEecCCCHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCceEEEE
Confidence             5566666   889999999998888899999999999999      44666 899999999999984 33556799999


Q ss_pred             EeC
Q 027664          211 DVA  213 (220)
Q Consensus       211 ~~~  213 (220)
                      +++
T Consensus       364 ~~~  366 (366)
T 2cdc_A          364 LWE  366 (366)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            864

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.97  E-value=4.1e-31  Score=229.10  Aligned_cols=209  Identities=19%  Similarity=0.229  Sum_probs=174.6

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      +++++.++++|+++|+++||++++.++|||+++.+..++++|++|||+|+ |++|++++|+||+.|++|++++.++ +++
T Consensus       305 ~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~  383 (795)
T 3slk_A          305 VADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQ  383 (795)
T ss_dssp             EEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGG
T ss_pred             EeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhh
Confidence            57889999999999999999999999999999988888999999999996 9999999999999999999998765 544


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCe
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRK  155 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      .+ + +|+++++++.+.+   .+.+.++  |+|+||||+|++ .++.++++++++|+++.+|.......... ....++.
T Consensus       384 ~l-~-lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~gg~-~~~~~l~~l~~~Gr~v~iG~~~~~~~~~~-~~~~~~~  459 (795)
T 3slk_A          384 AV-E-LSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAGE-FADASLRMLPRGGRFLELGKTDVRDPVEV-ADAHPGV  459 (795)
T ss_dssp             GS-C-SCGGGEECSSSSTHHHHHHHHSCSSCCSEEEECCCTT-TTHHHHTSCTTCEEEEECCSTTCCCHHHH-HHHSSSE
T ss_pred             hh-h-cChhheeecCChhHHHHHHHHcCCCCeEEEEECCCcH-HHHHHHHHhcCCCEEEEeccccccCcccc-cccCCCC
Confidence            43 3 8999999987753   4555654  799999999986 68999999999999999987543221111 1234677


Q ss_pred             EEEEEecCC------HHHHHHHHHHHHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeCCc
Q 027664          156 IVGGSLIGG------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       156 ~~~~~~~~~------~~~~~~~~~~i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~  215 (220)
                      ++.++....      .+.++++++++++|++++.+ ++|+++++++||+.+++++..||+|+++++.
T Consensus       460 ~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~p~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~~~~  526 (795)
T 3slk_A          460 SYQAFDTVEAGPQRIGEMLHELVELFEGRVLEPLPVTAWDVRQAPEALRHLSQARHVGKLVLTMPPV  526 (795)
T ss_dssp             EEEECCGGGGHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEGGGHHHHHHHHHHTCCCBEEEEECCCC
T ss_pred             EEEEeeccccCHHHHHHHHHHHHHHHHcCCcCCCcceeEcHHHHHHHHHHHhcCCccceEEEecCcc
Confidence            777765421      25688899999999999877 8999999999999999999999999998653

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.97  E-value=6.7e-30  Score=204.34  Aligned_cols=208  Identities=17%  Similarity=0.253  Sum_probs=172.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+. + .++|++++.+.|||+++.+..++++|++|||+|+ |++|++++|+|+..|++|+++++++++++
T Consensus       125 ~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  202 (362)
T 2c0c_A          125 VVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSA  202 (362)
T ss_dssp             EEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             EEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            5788999999996 3 4677899999999999988777899999999995 99999999999999999999999887766


Q ss_pred             HHHHHcCCCEEEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCC------CC---C-
Q 027664           81 EAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL------EL---P-  146 (220)
Q Consensus        81 ~~~~~~g~~~~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~------~~---~-  146 (220)
                      .+ +++|++.++++.+.+   .+++..+ ++|++|||+|.. .++.++++++++|+++.+|......      .+   . 
T Consensus       203 ~~-~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~  280 (362)
T 2c0c_A          203 FL-KSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGA-MFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTL  280 (362)
T ss_dssp             HH-HHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCTH-HHHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTH
T ss_pred             HH-HHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCHH-HHHHHHHHHhcCCEEEEEeCCCCcCccccccccccccc
Confidence            55 679999999887643   3444444 799999999985 7899999999999999998754311      01   1 


Q ss_pred             chhhhcCCeEEEEEecCC-----HHHHHHHHHHHHcCCCccce---------EEeecccHHHHHHHHHcCCCceeEEEEe
Q 027664          147 AFPLLTGRKIVGGSLIGG-----LKETQEMIDFAAKHNIRADI---------EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~g~i~~~~---------~~~~~~~~~~a~~~~~~~~~~gk~vv~~  212 (220)
                      ...++.+++++.|++...     .++++++++++++|++++.+         +.++++++++|++.+++++..||+|+++
T Consensus       281 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  360 (362)
T 2c0c_A          281 PAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVEL  360 (362)
T ss_dssp             HHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEEC
T ss_pred             HHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCCCCceEEEEc
Confidence            245678899999987542     46789999999999998764         3579999999999999888789999987


Q ss_pred             C
Q 027664          213 A  213 (220)
Q Consensus       213 ~  213 (220)
                      +
T Consensus       361 ~  361 (362)
T 2c0c_A          361 P  361 (362)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.97  E-value=3.9e-31  Score=212.64  Aligned_cols=209  Identities=13%  Similarity=0.096  Sum_probs=167.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEE--ccchhHHHHHHHHHHCCCeEEEEeCCccch
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV--GLGGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~--G~g~~G~~~~~la~~~g~~vi~~~~~~~~~   79 (220)
                      ++|++.++++|+++|+++||++++.++|||++++...  ++|++|||+  |+|++|++++|+|++.|++|++++.+++++
T Consensus       132 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~--~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~  209 (379)
T 3iup_A          132 CIPADQCLVLPEGATPADGASSFVNPLTALGMVETMR--LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQA  209 (379)
T ss_dssp             EEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHHHHHH--HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHH
T ss_pred             EeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            5789999999999999999999999999998887665  899999999  459999999999999999999999988777


Q ss_pred             HHHHHHcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccc-----cC-----------CEEEEeCC
Q 027664           80 SEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLK-----SQ-----------GKLVLLGA  138 (220)
Q Consensus        80 ~~~~~~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~-----~~-----------G~~v~~g~  138 (220)
                      +.+ +++|+++++|+.+.+   .+++.++  ++|++|||+|++..++.++++++     ++           |+++.+|.
T Consensus       210 ~~~-~~lGa~~~~~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~  288 (379)
T 3iup_A          210 DLL-KAQGAVHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGG  288 (379)
T ss_dssp             HHH-HHTTCSCEEETTSTTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCC
T ss_pred             HHH-HhCCCcEEEeCCChHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecC
Confidence            655 789999999987754   4555553  89999999998766788888875     44           55555554


Q ss_pred             CCCCCCCCchhhhcCCeEEEEEecCCH------H----HHHHHHHHHHcCCCccce-EEeecccH--HHHHHHHHcCCCc
Q 027664          139 PEKPLELPAFPLLTGRKIVGGSLIGGL------K----ETQEMIDFAAKHNIRADI-EVIPADYV--NTAMERLAKADVR  205 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~i~~g~i~~~~-~~~~~~~~--~~a~~~~~~~~~~  205 (220)
                      ... ..++...++.+++++.|++....      +    .++.+++++.+ .+.+.+ ++|+|+++  ++|++.+.+++..
T Consensus       289 ~~~-~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~l~~~~~~~A~~~l~~~~~~  366 (379)
T 3iup_A          289 LDT-SPTEFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKT-TFASHYSKEISLAEVLDLDMIAVYNKRATG  366 (379)
T ss_dssp             SEE-EEEEECCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT-TTCCCCSEEEEHHHHTCHHHHHHHTTCCTT
T ss_pred             CCC-CccccccccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhc-cCCCcceEEecHHHhhhHHHHHHHhcCCCC
Confidence            331 12233455778899999865432      2    23556666666 577877 89999999  9999999999888


Q ss_pred             eeEEEEeCCc
Q 027664          206 YRFVIDVANT  215 (220)
Q Consensus       206 gk~vv~~~~~  215 (220)
                      ||+|+++++.
T Consensus       367 gKvVv~~~~g  376 (379)
T 3iup_A          367 EKYLINPNKG  376 (379)
T ss_dssp             CCEEEETTTT
T ss_pred             ceEEEeCCCC
Confidence            9999999764

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.95  E-value=1.8e-27  Score=224.92  Aligned_cols=213  Identities=20%  Similarity=0.258  Sum_probs=174.5

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++.+.|||+++....++++|++|||+|+ |++|++++|+|++.|++|++++.++++++
T Consensus      1627 ~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~ 1706 (2512)
T 2vz8_A         1627 LLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRA 1706 (2512)
T ss_dssp             ECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             EcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhH
Confidence            57889999999999999999999999999999988778999999999986 99999999999999999999999988887


Q ss_pred             HHHHH---cCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhh
Q 027664           81 EAVER---LGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~---~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~  151 (220)
                      .+.+.   +|+++++++.+.+   .+.+.++  |+|+||||+++. .++.++++++++|+++.+|..... .......++
T Consensus      1707 ~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~g~~-~l~~~l~~L~~~Gr~V~iG~~~~~~~~~~~~~~~ 1785 (2512)
T 2vz8_A         1707 YLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEE-KLQASVRCLAQHGRFLEIGKFDLSNNHALGMAVF 1785 (2512)
T ss_dssp             HHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCEEEEEECCCHH-HHHHHHTTEEEEEEEEECCCHHHHTTCEEEGGGG
T ss_pred             HHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCceEEEECCCch-HHHHHHHhcCCCcEEEEeecccccccCccccccc
Confidence            77553   6789999987754   3444454  799999999855 699999999999999999864321 122234457


Q ss_pred             cCCeEEEEEecCC-----HHHHHHHHHH----HHcCCCccce-EEeecccHHHHHHHHHcCCCceeEEEEeCCc
Q 027664          152 TGRKIVGGSLIGG-----LKETQEMIDF----AAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       152 ~~~~~~~~~~~~~-----~~~~~~~~~~----i~~g~i~~~~-~~~~~~~~~~a~~~~~~~~~~gk~vv~~~~~  215 (220)
                      .+++++.+.....     ...++.++++    +.+|.+++.+ ++|+++++++|++.+.+++..||+|++++++
T Consensus      1786 ~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l~p~i~~~f~l~ei~eA~~~l~~g~~~GKvVi~~~~~ 1859 (2512)
T 2vz8_A         1786 LKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQVREE 1859 (2512)
T ss_dssp             GGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCSCCCCEEEEESSTHHHHHHHHHTTCCSSEEEEECSCC
T ss_pred             ccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCcCCCcceEecHHHHHHHHHhhhccCccceEEEECCCc
Confidence            7889998876532     2344444444    4578888877 8999999999999999998889999998654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.93  E-value=9.6e-26  Score=165.78  Aligned_cols=176  Identities=22%  Similarity=0.277  Sum_probs=130.8

Q ss_pred             cceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHH
Q 027664            6 HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE   84 (220)
Q Consensus         6 ~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~   84 (220)
                      +.++++|+++|+++||++++++.|||+++.+..++++|++|+|+|+ |++|++++|+++..|++|+++++++++.+.+ +
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML-S   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-H
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-H
Confidence            5789999999999999999999999999987767899999999996 9999999999999999999999988766555 6


Q ss_pred             HcCCCEEEcCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhhcCCeEE
Q 027664           85 RLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGRKIV  157 (220)
Q Consensus        85 ~~g~~~~~~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~~  157 (220)
                      ++|++.++|..+.+   .+.+..+  ++|++||++|.. .++.++++++++|+++.+|....  ..+++. ..+.+++++
T Consensus        81 ~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~  158 (198)
T 1pqw_A           81 RLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGE-AIQRGVQILAPGGRFIELGKKDVYADASLGL-AALAKSASF  158 (198)
T ss_dssp             TTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCTH-HHHHHHHTEEEEEEEEECSCGGGTTTCEEEG-GGGTTTCEE
T ss_pred             HcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCchH-HHHHHHHHhccCCEEEEEcCCCCcCcCcCCh-hHhcCCcEE
Confidence            78998888876643   3334332  799999999865 68999999999999999987542  222322 235678888


Q ss_pred             EEEec------CC---HHHHHHHHHHHHcCCCccce
Q 027664          158 GGSLI------GG---LKETQEMIDFAAKHNIRADI  184 (220)
Q Consensus       158 ~~~~~------~~---~~~~~~~~~~i~~g~i~~~~  184 (220)
                      .+...      ..   .+.++++++++++|++++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~  194 (198)
T 1pqw_A          159 SVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLP  194 (198)
T ss_dssp             EECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             EEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCCC
Confidence            76532      11   35688899999999998765

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.32  E-value=1.2e-11  Score=98.46  Aligned_cols=135  Identities=17%  Similarity=0.141  Sum_probs=96.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE--EEcCCCHHHHHHhcCCccEEEEcCCCccc-
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS--FLVSRDQDEMQAAMGTMDGIIDTVSAVHP-  119 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  119 (220)
                      +++|+|+|+|++|+++++.++.+|++|+++++++++.+.+. +++...  +++. +.+.+.+...++|++|+|++.+.. 
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~DvVI~~~~~~~~~  244 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE-TLFGSRVELLYS-NSAEIETAVAEADLLIGAVLVPGRR  244 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHGGGSEEEEC-CHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HhhCceeEeeeC-CHHHHHHHHcCCCEEEECCCcCCCC
Confidence            48999999999999999999999999999999988877764 344322  3333 233343434589999999987542 


Q ss_pred             -----HHHHHhccccCCEEEEeCCCCC-------CCCCCchhhhcCCeEEEEEecC------------CHHHHHHHHHHH
Q 027664          120 -----LMPLIGLLKSQGKLVLLGAPEK-------PLELPAFPLLTGRKIVGGSLIG------------GLKETQEMIDFA  175 (220)
Q Consensus       120 -----~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i  175 (220)
                           ....++.++++|+++.++...+       +.+++...+..+++++.+....            ....++.+++++
T Consensus       245 ~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~~~l~~l~  324 (361)
T 1pjc_A          245 APILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPYVVKLA  324 (361)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence                 5678899999999999987643       2345555566788887775321            123356777788


Q ss_pred             HcCC
Q 027664          176 AKHN  179 (220)
Q Consensus       176 ~~g~  179 (220)
                      .+|.
T Consensus       325 ~~G~  328 (361)
T 1pjc_A          325 NQGL  328 (361)
T ss_dssp             HHGG
T ss_pred             hCCc
Confidence            7773

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.31  E-value=1.5e-11  Score=98.30  Aligned_cols=138  Identities=16%  Similarity=0.185  Sum_probs=94.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      ++++|+|+|+|.+|+.+++.++.+|++|+++++++++.+.+.+.+|.+...+..+.+.+.+...++|++++|+|.+.   
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~  244 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKA  244 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcccc
Confidence            46899999999999999999999999999999998877777555787644455555556555568999999998653   


Q ss_pred             ---cHHHHHhccccCCEEEEeCCCCC-------CCCCCchhhhcCCeEEEEEecC------------CHHHHHHHHHHHH
Q 027664          119 ---PLMPLIGLLKSQGKLVLLGAPEK-------PLELPAFPLLTGRKIVGGSLIG------------GLKETQEMIDFAA  176 (220)
Q Consensus       119 ---~~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~i~  176 (220)
                         ..+..++.++++|+++.++...+       +.+++...+..+++.+.+....            +...++.+++++.
T Consensus       245 ~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~  324 (369)
T 2eez_A          245 PKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAE  324 (369)
T ss_dssp             -CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHh
Confidence               15678899999999999987653       2233444455677777664321            1233566777777


Q ss_pred             cCC
Q 027664          177 KHN  179 (220)
Q Consensus       177 ~g~  179 (220)
                      +|.
T Consensus       325 ~g~  327 (369)
T 2eez_A          325 KGL  327 (369)
T ss_dssp             HTT
T ss_pred             cCh
Confidence            764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.30  E-value=9.9e-12  Score=99.46  Aligned_cols=119  Identities=19%  Similarity=0.176  Sum_probs=89.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~--  119 (220)
                      ++++|+|+|+|.+|+.+++.++.+|++|++++++.++.+.+.+.+|.+...+..+...+.+...++|+|++|++.+..  
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t  246 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKA  246 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCC
Confidence            578999999999999999999999999999999988777775557875433333444455555589999999986543  


Q ss_pred             ----HHHHHhccccCCEEEEeCCCCC-------CCCCCchhhhcCCeEEEEE
Q 027664          120 ----LMPLIGLLKSQGKLVLLGAPEK-------PLELPAFPLLTGRKIVGGS  160 (220)
Q Consensus       120 ----~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~~~~~~~~~  160 (220)
                          ....++.++++|.++.++...+       +.+++...+..+++.+.+.
T Consensus       247 ~~li~~~~l~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~  298 (377)
T 2vhw_A          247 PKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCV  298 (377)
T ss_dssp             CCCBCHHHHTTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECB
T ss_pred             cceecHHHHhcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEEEec
Confidence                5778899999999999985432       3344444455677776544

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.28  E-value=2e-11  Score=98.01  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=108.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCC----------------------HH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRD----------------------QD   98 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~----------------------~~   98 (220)
                      ++++|+|+|+|.+|+.+++.++.+|++|+++++++++.+.+ +.+|++.+ ++..+                      .+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~-~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV-ESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH-HHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68999999999999999999999999999999988877776 56898654 22211                      11


Q ss_pred             HHHHhcCCccEEEEcC---CCcc--c-HHHHHhccccCCEEEEeCCCCC-CCC--CCchhhhcCCeEEEEEecCCHHHHH
Q 027664           99 EMQAAMGTMDGIIDTV---SAVH--P-LMPLIGLLKSQGKLVLLGAPEK-PLE--LPAFPLLTGRKIVGGSLIGGLKETQ  169 (220)
Q Consensus        99 ~~~~~~~~~d~v~d~~---g~~~--~-~~~~~~~l~~~G~~v~~g~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  169 (220)
                      .+.+...++|+||+|+   |.+.  . ....++.+++++.++.++...+ ..+  .+...+..+++++.+.........+
T Consensus       250 ~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~p~~~~~  329 (384)
T 1l7d_A          250 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAA  329 (384)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSGGGGGHH
T ss_pred             HHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCCcchhHH
Confidence            2445556899999999   5322  2 3678899999999999986432 222  2333456788888887654334456


Q ss_pred             HHHHHHHcCCCccc--e--E---EeecccHHHHHHH
Q 027664          170 EMIDFAAKHNIRAD--I--E---VIPADYVNTAMER  198 (220)
Q Consensus       170 ~~~~~i~~g~i~~~--~--~---~~~~~~~~~a~~~  198 (220)
                      ...+++.++.++..  +  +   .+.++.-++.++.
T Consensus       330 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~  365 (384)
T 1l7d_A          330 DASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSG  365 (384)
T ss_dssp             HHHHHHHHHHHHHHGGGEETTTTEECCCTTCHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHhCCcchhhccccCHHHhc
Confidence            67888888766543  1  1   4455545555553

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.09  E-value=7.2e-10  Score=89.27  Aligned_cols=138  Identities=19%  Similarity=0.159  Sum_probs=93.4

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCC-------------CHH-------HH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSR-------------DQD-------EM  100 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~-------------~~~-------~~  100 (220)
                      ++++|+|+|+|.+|+.++++++.+|++|++++++.++.+.+ +++|++.+. +..             ..+       .+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~-~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV-QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH-HHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            57899999999999999999999999999999998877776 678886542 211             111       23


Q ss_pred             HHhcCCccEEEEcCCCc-----ccH-HHHHhccccCCEEEEeCCCC-CCCCCCc--h-hhhcCCeEEEEEecCCHHHHHH
Q 027664          101 QAAMGTMDGIIDTVSAV-----HPL-MPLIGLLKSQGKLVLLGAPE-KPLELPA--F-PLLTGRKIVGGSLIGGLKETQE  170 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~-----~~~-~~~~~~l~~~G~~v~~g~~~-~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~  170 (220)
                      .+...++|+||+|++.+     ..+ ...++.|++++.++.++... +......  . .+..+++++.+.........+.
T Consensus       250 ~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~~~p~~~~~~  329 (401)
T 1x13_A          250 AAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQ  329 (401)
T ss_dssp             HHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCSCTGGGSHHH
T ss_pred             HHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeCCCcccCHHH
Confidence            34445799999995321     223 57889999999999998653 3333322  1 2456788888865432222233


Q ss_pred             HHHHHHcCCC
Q 027664          171 MIDFAAKHNI  180 (220)
Q Consensus       171 ~~~~i~~g~i  180 (220)
                      ..+++.++.+
T Consensus       330 a~~ll~~~~~  339 (401)
T 1x13_A          330 SSQLYGTNLV  339 (401)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhHH
Confidence            5555555543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.06  E-value=1.4e-10  Score=93.74  Aligned_cols=129  Identities=16%  Similarity=0.190  Sum_probs=90.6

Q ss_pred             ceEeCCCCCCccccccccchhhhhhhHHHhhcC---CCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHH
Q 027664            7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL---DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA   82 (220)
Q Consensus         7 ~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~---~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~   82 (220)
                      .++.+|++++.+.++. ..+..++|.++.....   -.+|++|+|+|+|.+|.++++.++..|+ +|+++.++.++.+.+
T Consensus       129 ~a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~l  207 (404)
T 1gpj_A          129 RAINLGKRAREETRIS-EGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVEL  207 (404)
T ss_dssp             HHHHHHHHHHHHSSTT-CSCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH
T ss_pred             HHhhhhccCcchhhhc-CCCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            4556667776666554 3455677776654321   2579999999999999999999999999 999999998776667


Q ss_pred             HHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHH--HHHhc--c--ccCCEEEEeCCCC
Q 027664           83 VERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM--PLIGL--L--KSQGKLVLLGAPE  140 (220)
Q Consensus        83 ~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~--~~~~~--l--~~~G~~v~~g~~~  140 (220)
                      .+.+|++ +++..   .+.+...++|+|++|+|.+..+.  ..+..  +  +++|.++.++...
T Consensus       208 a~~~g~~-~~~~~---~l~~~l~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~  267 (404)
T 1gpj_A          208 ARDLGGE-AVRFD---ELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN  267 (404)
T ss_dssp             HHHHTCE-ECCGG---GHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             HHHcCCc-eecHH---hHHHHhcCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC
Confidence            7788875 34332   23344458999999998765432  44554  3  5577777776643

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.03  E-value=1.4e-09  Score=89.31  Aligned_cols=173  Identities=18%  Similarity=0.157  Sum_probs=113.2

Q ss_pred             hhhhhhhHHHhhc-CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhc
Q 027664           26 AGITVYSPLRFYG-LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM  104 (220)
Q Consensus        26 ~~~ta~~~l~~~~-~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  104 (220)
                      ...++++++.+.. ...+|++|+|+|.|.+|..+++.++.+|++|+++++++.+.+.+ +++|++ +.+      +.+..
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A-~~~Ga~-~~~------l~e~l  327 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQA-MMEGFD-VVT------VEEAI  327 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCE-ECC------HHHHG
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCE-Eec------HHHHH
Confidence            3445566665443 25789999999999999999999999999999999988766555 578885 322      22334


Q ss_pred             CCccEEEEcCCCcccHH-HHHhccccCCEEEEeCCCCCCCCCCchhhhcCCe---EEEEEec-CCHHHHHHHHHHHHcCC
Q 027664          105 GTMDGIIDTVSAVHPLM-PLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRK---IVGGSLI-GGLKETQEMIDFAAKHN  179 (220)
Q Consensus       105 ~~~d~v~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~i~~g~  179 (220)
                      .++|+|++|+|....+. ..++.++++|+++.+|....  +++...+..+.+   ++.+... .....+...+.++.+|+
T Consensus       328 ~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~~--eId~~aL~~~aL~~~~I~~~ldv~~~~~~~~~l~LL~~gr  405 (494)
T 3ce6_A          328 GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDN--EIDMAGLERSGATRVNVKPQVDLWTFGDTGRSIIVLSEGR  405 (494)
T ss_dssp             GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSGG--GBCHHHHHHTTCEEEEEETTEEEEECTTTCCEEEEEGGGS
T ss_pred             hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCCC--ccCHHHHHHhhhccceEEEEEEEeecCCcchHHHHHhCCC
Confidence            58999999999876666 78899999999999987542  355555555433   3332110 00001111223444555


Q ss_pred             Cc------cce-----EEeecccHHHHHHHHHcCCCceeEE
Q 027664          180 IR------ADI-----EVIPADYVNTAMERLAKADVRYRFV  209 (220)
Q Consensus       180 i~------~~~-----~~~~~~~~~~a~~~~~~~~~~gk~v  209 (220)
                      +.      |++     +.| ++++.++++.+.+++..++.|
T Consensus       406 lvnL~~~TPH~a~~~~~s~-~~qa~~ai~~~~~g~~~~~~V  445 (494)
T 3ce6_A          406 LLNLGNATGHPSFVMSNSF-ANQTIAQIELWTKNDEYDNEV  445 (494)
T ss_dssp             CHHHHHSCCSCHHHHHHHH-HHHHHHHHHHHHTGGGCCSSE
T ss_pred             EEeccCCCCCccccchHHH-HHHHHHHHHHHHcCCCCCCEE
Confidence            53      222     224 567888888887766554444

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.98  E-value=1.2e-09  Score=75.60  Aligned_cols=107  Identities=19%  Similarity=0.145  Sum_probs=79.1

Q ss_pred             hhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCc
Q 027664           28 ITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        28 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  107 (220)
                      ..++.+++.... ..+++|+|+|+|.+|..+++.++..|++|++.+++.++.+.+.+.++.+.. ...+.   .+...++
T Consensus         7 sv~~~a~~~~~~-~~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~-~~~~~---~~~~~~~   81 (144)
T 3oj0_A            7 SIPSIVYDIVRK-NGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYV-LINDI---DSLIKNN   81 (144)
T ss_dssp             SHHHHHHHHHHH-HCCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEE-ECSCH---HHHHHTC
T ss_pred             cHHHHHHHHHHh-ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceE-eecCH---HHHhcCC
Confidence            345666665553 458999999999999999998888999988999998888887788885432 33332   2333479


Q ss_pred             cEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          108 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       108 d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      |+|+.|++...... ....+++++.++.++.+.
T Consensus        82 Divi~at~~~~~~~-~~~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           82 DVIITATSSKTPIV-EERSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             SEEEECSCCSSCSB-CGGGCCTTCEEEECCSSC
T ss_pred             CEEEEeCCCCCcEe-eHHHcCCCCEEEEccCCc
Confidence            99999999864332 236788899999887643

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.89  E-value=2.1e-08  Score=80.08  Aligned_cols=135  Identities=20%  Similarity=0.177  Sum_probs=90.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEc-------------CCC----------HH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV-------------SRD----------QD   98 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~-------------~~~----------~~   98 (220)
                      ++.+|+|+|+|.+|+.++++++.+|++|++.+.++++++.+ +++|++.+-.             +..          ..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~-~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQV-ASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHH-HHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            67899999999999999999999999999999999887777 5688753211             111          11


Q ss_pred             HHHHhcCCccEEEEcCCCcc------cHHHHHhccccCCEEEEeCCCC-CCCCC--CchhhhcCCeEEEEEecCCHHHHH
Q 027664           99 EMQAAMGTMDGIIDTVSAVH------PLMPLIGLLKSQGKLVLLGAPE-KPLEL--PAFPLLTGRKIVGGSLIGGLKETQ  169 (220)
Q Consensus        99 ~~~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~G~~v~~g~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  169 (220)
                      .+.+...+.|+||.|+..+.      .....++.|++++.++.++... +..+.  +...+..+++.+.+.........+
T Consensus       268 ~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~nlP~~vp~  347 (405)
T 4dio_A          268 LVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHLNVAGRIAA  347 (405)
T ss_dssp             HHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEETTEEEEECSSGGGGGHH
T ss_pred             HHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEECCEEEEEeCCCCccCHH
Confidence            23344458999999974321      2468899999999999998643 22322  222234567777776653322233


Q ss_pred             HHHHHHHc
Q 027664          170 EMIDFAAK  177 (220)
Q Consensus       170 ~~~~~i~~  177 (220)
                      +...++.+
T Consensus       348 tAS~~ls~  355 (405)
T 4dio_A          348 SASLLYAK  355 (405)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33333333

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.84  E-value=1.8e-08  Score=79.90  Aligned_cols=120  Identities=19%  Similarity=0.172  Sum_probs=83.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-c--------CC----------CHHHHHH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-V--------SR----------DQDEMQA  102 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~--------~~----------~~~~~~~  102 (220)
                      ++.+|+|+|+|.+|+.+++.++.+|++|++.+++.++++++ +++|++.+- +        +.          +.+.+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~-~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQV-RSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHH-HHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            67899999999999999999999999999999999888777 568875331 0        00          0123344


Q ss_pred             hcCCccEEEEcCCCc-----c-cHHHHHhccccCCEEEEeCCCCCC-CC--CCchhhhcCCeEEEEEec
Q 027664          103 AMGTMDGIIDTVSAV-----H-PLMPLIGLLKSQGKLVLLGAPEKP-LE--LPAFPLLTGRKIVGGSLI  162 (220)
Q Consensus       103 ~~~~~d~v~d~~g~~-----~-~~~~~~~~l~~~G~~v~~g~~~~~-~~--~~~~~~~~~~~~~~~~~~  162 (220)
                      ...++|+||.|+..+     . .....++.+++++.++.++...+. .+  .+...+...++.+.+...
T Consensus       262 ~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~~~~~~~gV~~~~v~n  330 (381)
T 3p2y_A          262 AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPGRTIVHHGVTITSPLN  330 (381)
T ss_dssp             HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTCEEEETTEEEECCSC
T ss_pred             HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCCCeEEECCEEEEeeCC
Confidence            456999999997332     1 247889999999999999865432 22  111123345566665543

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.68  E-value=1.4e-07  Score=62.31  Aligned_cols=94  Identities=18%  Similarity=0.244  Sum_probs=67.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      .+.+|+|+|+|.+|..+++.+...| .+|+++++++++.+.+. ..+... ..|..+.+.+.+...++|+||+|+|....
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh
Confidence            4568999999999999999999999 69999999987766663 455543 34556666777777799999999986533


Q ss_pred             HHHHHhccccCCEEEEe
Q 027664          120 LMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~  136 (220)
                      ......+.+.+..++.+
T Consensus        83 ~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           83 PIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             HHHHHHHHHTTCEEECC
T ss_pred             HHHHHHHHHhCCCEEEe
Confidence            33333344445555543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.66  E-value=5.6e-08  Score=67.90  Aligned_cols=90  Identities=11%  Similarity=0.131  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHh-cCCccEEEEcCCCc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAV  117 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~-~~~~d~v~d~~g~~  117 (220)
                      ..++++|+|+|+|.+|..+++.++..|.+|+++++++++.+.+.+..|...+. +..+.+.+.+. ..++|+||.|++.+
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~   95 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD   95 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCc
Confidence            45788999999999999999999999999999999987766552245654432 33344444443 34799999999987


Q ss_pred             ccHHHHHhcccc
Q 027664          118 HPLMPLIGLLKS  129 (220)
Q Consensus       118 ~~~~~~~~~l~~  129 (220)
                      .....+...++.
T Consensus        96 ~~~~~~~~~~~~  107 (155)
T 2g1u_A           96 STNFFISMNARY  107 (155)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            544455555544

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.63  E-value=3e-07  Score=73.76  Aligned_cols=103  Identities=19%  Similarity=0.213  Sum_probs=78.3

Q ss_pred             hhHHHhh-cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccE
Q 027664           31 YSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        31 ~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~  109 (220)
                      +.++.+. +..-.|++++|+|.|.+|..+++.++.+|++|++++.++.+..++ ...|.. +.      .+.+.....|+
T Consensus       207 ~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A-~~~G~~-v~------~Leeal~~ADI  278 (435)
T 3gvp_A          207 LDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQA-CMDGFR-LV------KLNEVIRQVDI  278 (435)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCE-EC------CHHHHTTTCSE
T ss_pred             HHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHH-HHcCCE-ec------cHHHHHhcCCE
Confidence            3444443 234589999999999999999999999999999999887654444 345643 21      14455668999


Q ss_pred             EEEcCCCcccHH-HHHhccccCCEEEEeCCCCC
Q 027664          110 IIDTVSAVHPLM-PLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       110 v~d~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~  141 (220)
                      ++.|.|+...+. ..+..|++++.++.+|....
T Consensus       279 Vi~atgt~~lI~~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          279 VITCTGNKNVVTREHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             EEECSSCSCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred             EEECCCCcccCCHHHHHhcCCCcEEEEecCCCc
Confidence            999988776665 78899999999999987543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.57  E-value=3.6e-07  Score=65.51  Aligned_cols=93  Identities=15%  Similarity=0.175  Sum_probs=68.2

Q ss_pred             CCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHh--cCCccEEEEcCCCcc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA--MGTMDGIIDTVSAVH  118 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~--~~~~d~v~d~~g~~~  118 (220)
                      +++|+|+|+|.+|..+++.++.. |.+|+++++++++.+.+ +..|...+. |..+.+.+.+.  ..++|+++.|+++..
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~-~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~  117 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH-RSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQ  117 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH-HHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH-HHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChH
Confidence            56899999999999999999998 99999999998877666 467876543 55556666665  458999999999764


Q ss_pred             cHHHHHhccc---cCCEEEEe
Q 027664          119 PLMPLIGLLK---SQGKLVLL  136 (220)
Q Consensus       119 ~~~~~~~~l~---~~G~~v~~  136 (220)
                      ....++..++   +..+++..
T Consensus       118 ~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          118 GNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEE
Confidence            3333333333   34466553

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.57  E-value=1e-06  Score=67.98  Aligned_cols=95  Identities=20%  Similarity=0.288  Sum_probs=73.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      -.|++++|+|.|.+|..+++.++.+|++|++.+++.++.+.+ +.+|++. ++.   +.+.+.....|+|+.+++....-
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~-~~~---~~l~~~l~~aDvVi~~~p~~~i~  227 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI-AEMGMEP-FHI---SKAAQELRDVDVCINTIPALVVT  227 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTSEE-EEG---GGHHHHTTTCSEEEECCSSCCBC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-HHCCCee-cCh---hhHHHHhcCCCEEEECCChHHhC
Confidence            468999999999999999999999999999999987665554 4677653 222   23445556899999999865333


Q ss_pred             HHHHhccccCCEEEEeCCCC
Q 027664          121 MPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ...+..+++++.++.++...
T Consensus       228 ~~~l~~mk~~~~lin~ar~~  247 (293)
T 3d4o_A          228 ANVLAEMPSHTFVIDLASKP  247 (293)
T ss_dssp             HHHHHHSCTTCEEEECSSTT
T ss_pred             HHHHHhcCCCCEEEEecCCC
Confidence            56778899999999997643

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.50  E-value=8e-07  Score=67.73  Aligned_cols=100  Identities=19%  Similarity=0.240  Sum_probs=76.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      -+|+.+||.|+ +++|.++++.+...|++|+++++++++.++..+++|.+.   ..|..+++.++++       .+++|+
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi  106 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDV  106 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEE
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            36899999997 899999999999999999999999998888888887532   2355565544433       247999


Q ss_pred             EEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          110 IIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +++++|...                         ..+.++..|+++|+++.++...
T Consensus       107 LVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~  162 (273)
T 4fgs_A          107 LFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTA  162 (273)
T ss_dssp             EEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred             EEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehh
Confidence            999988631                         1244567888899999987654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.47  E-value=1.8e-06  Score=66.93  Aligned_cols=96  Identities=20%  Similarity=0.281  Sum_probs=74.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      -.|++++|+|+|.+|..+++.++.+|++|++.+++.++.+.+ ..+|.. .++.   ..+.+.....|+|+.+++....-
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~-~~~~---~~l~~~l~~aDvVi~~~p~~~i~  229 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARI-TEMGLV-PFHT---DELKEHVKDIDICINTIPSMILN  229 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCE-EEEG---GGHHHHSTTCSEEEECCSSCCBC
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHCCCe-EEch---hhHHHHhhCCCEEEECCChhhhC
Confidence            468999999999999999999999999999999988665544 356764 3322   23455567899999999875333


Q ss_pred             HHHHhccccCCEEEEeCCCCC
Q 027664          121 MPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~~  141 (220)
                      ...+..+++++.++.++....
T Consensus       230 ~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          230 QTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             HHHHTTSCTTCEEEECSSTTC
T ss_pred             HHHHHhCCCCCEEEEEeCCCC
Confidence            567788999999999986443

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.39  E-value=2.1e-06  Score=69.10  Aligned_cols=93  Identities=18%  Similarity=0.214  Sum_probs=73.0

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      .-.|++++|+|.|.+|..+++.++.+|++|++++.++.+..++ ...|... .+      +.+.....|+++.+.|+...
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A-~~~G~~v-v~------LeElL~~ADIVv~atgt~~l  315 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQA-AMDGFEV-VT------LDDAASTADIVVTTTGNKDV  315 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH-HHTTCEE-CC------HHHHGGGCSEEEECCSSSSS
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHH-HhcCcee-cc------HHHHHhhCCEEEECCCCccc
Confidence            4589999999999999999999999999999998877544443 3456532 21      34455679999999987655


Q ss_pred             H-HHHHhccccCCEEEEeCCCC
Q 027664          120 L-MPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       120 ~-~~~~~~l~~~G~~v~~g~~~  140 (220)
                      + ...+..|++++.++.+|...
T Consensus       316 I~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          316 ITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             BCHHHHHHSCTTEEEEECSSST
T ss_pred             cCHHHHhcCCCCeEEEEcCCCC
Confidence            4 57889999999999998654

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.39  E-value=2.1e-06  Score=68.99  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=77.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      -.|++|+|+|.|.+|..+++.++.+|++|++++.++.+..++ ...|....       .+.+.....|+++.+.++...+
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A-~~~G~~~~-------sL~eal~~ADVVilt~gt~~iI  280 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQA-AMEGYQVL-------LVEDVVEEAHIFVTTTGNDDII  280 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEEC-------CHHHHTTTCSEEEECSSCSCSB
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHH-HHhCCeec-------CHHHHHhhCCEEEECCCCcCcc
Confidence            468999999999999999999999999999999887654444 35565321       2555666899999998876555


Q ss_pred             H-HHHhccccCCEEEEeCCCCCCCCCCchhhhcCC
Q 027664          121 M-PLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGR  154 (220)
Q Consensus       121 ~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  154 (220)
                      . ..+..|+++..++.++.  +..+++...+....
T Consensus       281 ~~e~l~~MK~gAIVINvgR--g~vEID~~~L~~~~  313 (436)
T 3h9u_A          281 TSEHFPRMRDDAIVCNIGH--FDTEIQVAWLKANA  313 (436)
T ss_dssp             CTTTGGGCCTTEEEEECSS--SGGGBCHHHHHHHC
T ss_pred             CHHHHhhcCCCcEEEEeCC--CCCccCHHHHHhhc
Confidence            4 67888999999999874  33445555544433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.38  E-value=1.9e-06  Score=66.10  Aligned_cols=100  Identities=15%  Similarity=0.245  Sum_probs=72.1

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      ...++++++||.+|+|+.|..++.+++..|++|++++.+++..+.+.+.   .|.+.+ +...+...+.  .+.||+|+-
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDvV~~  194 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDVLMV  194 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSEEEE
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCEEEE
Confidence            3457999999999999878888888888899999999999877666443   343211 2222222221  348999997


Q ss_pred             cCCCc---ccHHHHHhccccCCEEEEeCC
Q 027664          113 TVSAV---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~g~~---~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      +...+   ..++.+.+.|++||+++....
T Consensus       195 ~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          195 AALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             CTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            65543   357889999999999998764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.34  E-value=3e-06  Score=69.14  Aligned_cols=91  Identities=20%  Similarity=0.248  Sum_probs=71.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      -.|++++|.|+|++|..+++.++..|++|++++.++.+..++. ..+++ +.   +   ..+....+|+++++.|....+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa-~~g~d-v~---~---lee~~~~aDvVi~atG~~~vl  334 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQAT-MEGLQ-VL---T---LEDVVSEADIFVTTTGNKDII  334 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC---C---GGGTTTTCSEEEECSSCSCSB
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HhCCc-cC---C---HHHHHHhcCEEEeCCCChhhh
Confidence            4789999999999999999999999999999988876655553 44543 21   1   123334799999999987655


Q ss_pred             H-HHHhccccCCEEEEeCCC
Q 027664          121 M-PLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       121 ~-~~~~~l~~~G~~v~~g~~  139 (220)
                      . ..+..+++++.++..|..
T Consensus       335 ~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          335 MLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             CHHHHTTSCTTEEEEESSST
T ss_pred             hHHHHHhcCCCeEEEEcCCC
Confidence            4 488899999999999865

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=98.26  E-value=1.1e-05  Score=61.96  Aligned_cols=76  Identities=13%  Similarity=0.132  Sum_probs=59.0

Q ss_pred             CCCCEEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CC-CEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           41 KPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GA-DSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G-~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~-~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      .+++++||.| +|++|.+++..+...|++|+++.++.++.+++.+.+    +. -...|..+.+.+.+....+|++++++
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~a  196 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG  196 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECC
Confidence            4678999999 599999999988889999999999877766655443    32 23346666667777777899999999


Q ss_pred             CC
Q 027664          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      |.
T Consensus       197 g~  198 (287)
T 1lu9_A          197 AI  198 (287)
T ss_dssp             CT
T ss_pred             Cc
Confidence            74

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=98.23  E-value=8e-06  Score=61.66  Aligned_cols=100  Identities=19%  Similarity=0.249  Sum_probs=72.3

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      -.|+++||.|+ |++|..+++.+...|++|+++++++++.+++.+.++...   ..|..+.+.++++       .+++|+
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDL   85 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            35789999997 999999999888889999999999888777766665422   2355555444332       247999


Q ss_pred             EEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          110 IIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +++++|...                         ..+.+...++++|+++.++...
T Consensus        86 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  141 (255)
T 4eso_A           86 LHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVA  141 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChh
Confidence            999987531                         0133455667789999987654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.19  E-value=1.9e-05  Score=53.87  Aligned_cols=94  Identities=19%  Similarity=0.161  Sum_probs=67.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHh-cCCccEEEEcCCCccc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAVHP  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~-~~~~d~v~d~~g~~~~  119 (220)
                      ..++++|+|.|.+|..+++.++..|.+|++++.++++.+.+ +..|...+. |..+++.+++. ..++|.++-+++.+..
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~-~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~   84 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDEL-RERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE   84 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-HHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence            35679999999999999999999999999999999887776 457775543 44555555554 2489999999998642


Q ss_pred             HH---HHHhccccCCEEEEe
Q 027664          120 LM---PLIGLLKSQGKLVLL  136 (220)
Q Consensus       120 ~~---~~~~~l~~~G~~v~~  136 (220)
                      -.   ...+.+.+..+++..
T Consensus        85 n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           85 AGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             HHHHHHHHHHHCSSSEEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEEE
Confidence            22   233444455565543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.15  E-value=7.5e-06  Score=61.25  Aligned_cols=102  Identities=14%  Similarity=0.039  Sum_probs=71.6

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCC--CEEEcCCCHHHHHHh-c-
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA--DSFLVSRDQDEMQAA-M-  104 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~--~~~~~~~~~~~~~~~-~-  104 (220)
                      ..+.... +.++++||.+|+| .|..+..+++. +.+++.++.+++..+.+.+.   .+.  ...+...+...  .. . 
T Consensus        82 ~~~~~~~-~~~~~~vldiG~G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~  156 (248)
T 2yvl_A           82 YIALKLN-LNKEKRVLEFGTG-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD--AEVPE  156 (248)
T ss_dssp             HHHHHTT-CCTTCEEEEECCT-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT--SCCCT
T ss_pred             HHHHhcC-CCCCCEEEEeCCC-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh--cccCC
Confidence            3344443 6899999999998 69999999988 78999999998776665443   232  11121122111  11 1 


Q ss_pred             CCccEEEEcCCCc-ccHHHHHhccccCCEEEEeCC
Q 027664          105 GTMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       105 ~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ++||+|+...+.+ ..+..+.+.|+++|+++....
T Consensus       157 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          157 GIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             TCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             CcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            3799999888765 578889999999999998743

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=98.14  E-value=2.4e-05  Score=59.60  Aligned_cols=76  Identities=18%  Similarity=0.241  Sum_probs=56.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHhc-------CCccE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAAM-------GTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~-------~~~d~  109 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.++..   ...|..+.+.++++.       +++|+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  105 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDV  105 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            45788999997 99999999988888999999999988877777776532   123555655444332       48999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus       106 lVnnAg~  112 (272)
T 4dyv_A          106 LFNNAGT  112 (272)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999985

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.14  E-value=4.5e-06  Score=56.98  Aligned_cols=74  Identities=19%  Similarity=0.328  Sum_probs=54.3

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHh-cCCccEEEEcCCCc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAV  117 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~-~~~~d~v~d~~g~~  117 (220)
                      +++++|+|+|.+|..+++.+...|.+|+++++++++.+.+ +..+...+. +..+.+.+.+. .+++|+++.|++.+
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-ASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTT-TTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            4679999999999999999999999999999887655444 334543332 44445555554 35799999999975

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=98.13  E-value=3.4e-05  Score=58.57  Aligned_cols=76  Identities=24%  Similarity=0.344  Sum_probs=58.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHhc-------CCccE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAAM-------GTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~-------~~~d~  109 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.++.+++.+.++....   .|..+.+.++++.       +++|+
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDI  104 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            35789999997 9999999998888999999999998887777777765332   3555555444332       47999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus       105 lvnnAg~  111 (266)
T 3grp_A          105 LVNNAGI  111 (266)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999985

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.13  E-value=1.4e-05  Score=62.00  Aligned_cols=86  Identities=15%  Similarity=0.274  Sum_probs=60.4

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC---ccchHHHHHHc----CC-CEEEcCCCHHHHH
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS---PSKKSEAVERL----GA-DSFLVSRDQDEMQ  101 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~---~~~~~~~~~~~----g~-~~~~~~~~~~~~~  101 (220)
                      ..+|...+.--.++++||+|+|++|.+++..+...|+ +|+++.++   .++.+++++++    +. -.+++..+.+.+.
T Consensus       142 ~~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~  221 (315)
T 3tnl_A          142 MRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLR  221 (315)
T ss_dssp             HHHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred             HHHHHHcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHH
Confidence            3445443322368899999999999999999989999 89999999   66655554443    22 1334555544455


Q ss_pred             HhcCCccEEEEcCCC
Q 027664          102 AAMGTMDGIIDTVSA  116 (220)
Q Consensus       102 ~~~~~~d~v~d~~g~  116 (220)
                      +....+|+||+|++-
T Consensus       222 ~~l~~aDiIINaTp~  236 (315)
T 3tnl_A          222 KEIAESVIFTNATGV  236 (315)
T ss_dssp             HHHHTCSEEEECSST
T ss_pred             hhhcCCCEEEECccC
Confidence            555689999999874

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.11  E-value=2.9e-05  Score=52.57  Aligned_cols=76  Identities=17%  Similarity=0.202  Sum_probs=56.5

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHh-cCCccEEEEcCCCcc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAVH  118 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~-~~~~d~v~d~~g~~~  118 (220)
                      +.+|+|+|+|.+|..+++.+...|.+|+++++++++.+.+.+.++...+. +..+.+.+.+. ..++|+++-|++.+.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~   81 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE   81 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch
Confidence            45799999999999999988888999999999887776665555664332 34444444443 358999999998763

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.10  E-value=2.5e-05  Score=60.29  Aligned_cols=95  Identities=15%  Similarity=0.092  Sum_probs=68.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCC--EEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGAD--SFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      -.+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+++.++..  .+++   .+.+.+...++|+||+|++..
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~---~~~~~~~~~~aDivIn~t~~~  215 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS---LAEAETRLAEYDIIINTTSVG  215 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC---HHHHHHTGGGCSEEEECSCTT
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee---HHHHHhhhccCCEEEECCCCC
Confidence            367899999999999999999989998 9999999988878887777652  2222   233444456899999999865


Q ss_pred             ccH-----HHHHhccccCCEEEEeCC
Q 027664          118 HPL-----MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       118 ~~~-----~~~~~~l~~~G~~v~~g~  138 (220)
                      ..-     ......++++..++.+..
T Consensus       216 ~~~~~~~~~i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          216 MHPRVEVQPLSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             CSSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred             CCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            310     111245666667777654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=98.10  E-value=2.9e-05  Score=59.32  Aligned_cols=75  Identities=17%  Similarity=0.295  Sum_probs=57.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .|+++||.|+ |++|..+++.+...|++|++++++.++.+++.+.++..   ...|..+.+.++++       .+++|++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  107 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKL  107 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5789999997 89999999988888999999999988777776776532   12355665544332       2479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus       108 vnnAg~  113 (277)
T 3gvc_A          108 VANAGV  113 (277)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999985

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=98.09  E-value=4.3e-05  Score=57.69  Aligned_cols=100  Identities=13%  Similarity=0.234  Sum_probs=68.7

Q ss_pred             CCCEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCC-C---EEEcCCCHHHHHHh-------c
Q 027664           42 PGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA-D---SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g--~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~-~---~~~~~~~~~~~~~~-------~  104 (220)
                      .|+++||.|+ |  ++|.++++.+...|++|+++.++++..+++.+.   ++. .   ...|..+++.++++       .
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5899999996 5  799999998889999999999998766655443   332 1   12455665544332       2


Q ss_pred             CCccEEEEcCCCcc-----------c---H---------------HHHHhccccCCEEEEeCCCCC
Q 027664          105 GTMDGIIDTVSAVH-----------P---L---------------MPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       105 ~~~d~v~d~~g~~~-----------~---~---------------~~~~~~l~~~G~~v~~g~~~~  141 (220)
                      +++|++++++|...           .   +               +.....++++|+|+.++...+
T Consensus        85 G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~  150 (256)
T 4fs3_A           85 GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGG  150 (256)
T ss_dssp             CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGG
T ss_pred             CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccc
Confidence            47999999987420           0   1               123446677899998876543

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=98.09  E-value=3.8e-05  Score=58.63  Aligned_cols=75  Identities=17%  Similarity=0.203  Sum_probs=57.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++....   .|..+.+.++++       .+++|++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l   83 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL   83 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            4688999997 9999999998888999999999999888877666654222   355555544333       2489999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      |+++|.
T Consensus        84 v~~Ag~   89 (281)
T 3m1a_A           84 VNNAGR   89 (281)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999985

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=98.07  E-value=1.6e-05  Score=60.83  Aligned_cols=75  Identities=20%  Similarity=0.258  Sum_probs=54.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC----CC---EEEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----AD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g----~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      .|+++||.|+ |++|..+++.+...|++|++++++.++.++..+.+.    ..   ...|..+.+.++++       .++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  111 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR  111 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 999999999888889999999999877666554432    11   22355665544333       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       112 iD~lvnnAG~  121 (281)
T 4dry_A          112 LDLLVNNAGS  121 (281)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.06  E-value=7.4e-05  Score=56.59  Aligned_cols=75  Identities=21%  Similarity=0.368  Sum_probs=56.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.++..+.++...   ..|..+.+.++++       .+++|++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   84 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   84 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence            4688999997 999999999888889999999999877777666654321   2355555544332       2479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        85 vnnAg~   90 (263)
T 2a4k_A           85 AHFAGV   90 (263)
T ss_dssp             EEGGGG
T ss_pred             EECCCC
Confidence            999874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.06  E-value=1.3e-05  Score=54.72  Aligned_cols=75  Identities=21%  Similarity=0.129  Sum_probs=58.5

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhc-CCccEEEEcCCCcc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAM-GTMDGIIDTVSAVH  118 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~-~~~d~v~d~~g~~~  118 (220)
                      ..+++|.|+|.+|..+++.+...|.+|+++++++++.+.+ +..+...+ .|..+++.+++.. .++|+++.++++..
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~-~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~   82 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELL-EDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE   82 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-HHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-HHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence            4579999999999999999999999999999998877666 34566433 3555566666653 48999999999753

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.03  E-value=4.6e-05  Score=55.97  Aligned_cols=97  Identities=5%  Similarity=0.070  Sum_probs=67.5

Q ss_pred             CEEEEEcc-chhHHHHHHHHH-HCCCeEEEEeCCcc-chHHHHHH-cCCCE-EEcCCCHHHHHHhcCCccEEEEcCCCcc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAK-AMGVKVTVISTSPS-KKSEAVER-LGADS-FLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~-~~g~~vi~~~~~~~-~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      +++||.|+ |.+|..+++.+. ..|.+|++++++++ +.+.+... .++.. ..|..+.+.+.+...++|++|+++|...
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            56999997 999999998777 89999999999977 55554311 12222 2356667777777789999999998631


Q ss_pred             c-HHHHHhccccC--CEEEEeCCCC
Q 027664          119 P-LMPLIGLLKSQ--GKLVLLGAPE  140 (220)
Q Consensus       119 ~-~~~~~~~l~~~--G~~v~~g~~~  140 (220)
                      . .+.+++.++..  |+++.++...
T Consensus        86 ~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           86 SDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             hhHHHHHHHHHhcCCCeEEEEeece
Confidence            1 34445555433  6888776544

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.03  E-value=1.5e-05  Score=60.75  Aligned_cols=106  Identities=17%  Similarity=0.155  Sum_probs=67.3

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEE
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      ..+|...+.--++++++|+|+|++|.++++.+...|++|+++.++.++.+.+.+.++....++..+.+.+.+  +++|++
T Consensus       107 ~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~--~~~Div  184 (271)
T 1nyt_A          107 LSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEG--HEFDLI  184 (271)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTT--CCCSEE
T ss_pred             HHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhcc--CCCCEE
Confidence            344544332236789999999999999999999999999999999887777766665310011112122211  589999


Q ss_pred             EEcCCCcccHH---HHHhccccCCEEEEeCC
Q 027664          111 IDTVSAVHPLM---PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       111 ~d~~g~~~~~~---~~~~~l~~~G~~v~~g~  138 (220)
                      ++|+|....-.   .....++++..++.+..
T Consensus       185 Vn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y  215 (271)
T 1nyt_A          185 INATSSGISGDIPAIPSSLIHPGIYCYDMFY  215 (271)
T ss_dssp             EECCSCGGGTCCCCCCGGGCCTTCEEEESCC
T ss_pred             EECCCCCCCCCCCCCCHHHcCCCCEEEEecc
Confidence            99999753200   11223455556666544

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=98.02  E-value=4.5e-05  Score=57.48  Aligned_cols=100  Identities=23%  Similarity=0.257  Sum_probs=69.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCEE---EcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADSF---LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~-------~~~~  107 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.++..+++   |.+..   .|-.+++.++++       .+++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            5899999997 89999999999999999999999987766654443   43332   244555544433       2379


Q ss_pred             cEEEEcCCCcc-------------------------cHHHHHhcc---ccCCEEEEeCCCCC
Q 027664          108 DGIIDTVSAVH-------------------------PLMPLIGLL---KSQGKLVLLGAPEK  141 (220)
Q Consensus       108 d~v~d~~g~~~-------------------------~~~~~~~~l---~~~G~~v~~g~~~~  141 (220)
                      |++++++|...                         ..+.++..|   ..+|+|+.++...+
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~  149 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTS  149 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGG
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhh
Confidence            99999998531                         013344555   24689999886543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.02  E-value=5.2e-05  Score=55.20  Aligned_cols=101  Identities=14%  Similarity=0.162  Sum_probs=68.9

Q ss_pred             HHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC---EEEcCCCHHHHHHhcCCc
Q 027664           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~~~~~  107 (220)
                      +.... +.++++||-+|+|. |..++.+++. +.+|+.++.+++..+.+.+.   +|.+   .++..+-.+.+. ....|
T Consensus        48 l~~l~-~~~~~~vLDlGcG~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~~~  123 (204)
T 3njr_A           48 LAALA-PRRGELLWDIGGGS-GSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-DLPLP  123 (204)
T ss_dssp             HHHHC-CCTTCEEEEETCTT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-TSCCC
T ss_pred             HHhcC-CCCCCEEEEecCCC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-cCCCC
Confidence            33443 68899999999986 8888888888 88999999998876655433   3443   222222122111 12379


Q ss_pred             cEEEEcCCCcc-cHHHHHhccccCCEEEEeCC
Q 027664          108 DGIIDTVSAVH-PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       108 d~v~d~~g~~~-~~~~~~~~l~~~G~~v~~g~  138 (220)
                      |+|+...+... .++.+.+.|+++|+++....
T Consensus       124 D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          124 EAVFIGGGGSQALYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             SEEEECSCCCHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CEEEECCcccHHHHHHHHHhcCCCcEEEEEec
Confidence            99986654332 57888899999999988643

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.01  E-value=3.9e-05  Score=60.99  Aligned_cols=94  Identities=14%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  123 (220)
                      .+|+|+|+|.+|..+++.+.. ..+|.+.+.+.++.+.+ +.......+|..+.+.+.++..+.|+|++|++.......+
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~-~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~v~   94 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKV-KEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFKSI   94 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHH-TTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH-hccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccchHH
Confidence            479999999999999887754 45888888887666555 3333233467777788888888999999999976555666


Q ss_pred             HhccccCCEEEEeCCC
Q 027664          124 IGLLKSQGKLVLLGAP  139 (220)
Q Consensus       124 ~~~l~~~G~~v~~g~~  139 (220)
                      -.|+..+-+++.+...
T Consensus        95 ~~~~~~g~~yvD~s~~  110 (365)
T 3abi_A           95 KAAIKSKVDMVDVSFM  110 (365)
T ss_dssp             HHHHHHTCEEEECCCC
T ss_pred             HHHHhcCcceEeeecc
Confidence            7788888899987643

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=98.01  E-value=4e-05  Score=57.49  Aligned_cols=75  Identities=21%  Similarity=0.270  Sum_probs=57.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .|+++||.|+ |++|..+++.+...|++|++++++.++.++..+.++....   .|..+.+.++++       .+++|++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   84 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDIL   84 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            5789999997 9999999999888999999999998887777777765333   244555444332       2479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        85 v~nAg~   90 (247)
T 3rwb_A           85 VNNASI   90 (247)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999985

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.00  E-value=4.8e-05  Score=58.01  Aligned_cols=75  Identities=16%  Similarity=0.186  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC-C----EEEcCCCHHHHHHhc-------C
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA-D----SFLVSRDQDEMQAAM-------G  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~-~----~~~~~~~~~~~~~~~-------~  105 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +. .    ...|..+.+.++++.       +
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            5689999997 99999999988888999999999877655543332   31 1    123555555443322       3


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++|+++|.
T Consensus       111 ~iD~vi~~Ag~  121 (279)
T 1xg5_A          111 GVDICINNAGL  121 (279)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=98.00  E-value=6.2e-05  Score=56.11  Aligned_cols=75  Identities=21%  Similarity=0.338  Sum_probs=56.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-CCE-EEcCCCHHHHHHhcC---CccEEEEcCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADS-FLVSRDQDEMQAAMG---TMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~---~~d~v~d~~g  115 (220)
                      +++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+. ... ..|..+.+.+++...   ++|++|+++|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag   85 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAA   85 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECCc
Confidence            5789999997 999999999888899999999998876666655443 322 235566666665543   6899999998


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        86 ~   86 (244)
T 3d3w_A           86 V   86 (244)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=98.00  E-value=4.2e-05  Score=58.20  Aligned_cols=75  Identities=15%  Similarity=0.262  Sum_probs=58.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHhc-------CCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.++..+.++..   ...|..+.+.++++.       +++|++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   89 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIV   89 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5789999997 99999999988889999999999998888877777642   223556655444332       479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        90 v~nAg~   95 (271)
T 3tzq_B           90 DNNAAH   95 (271)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999885

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.99  E-value=5.7e-05  Score=57.00  Aligned_cols=75  Identities=17%  Similarity=0.314  Sum_probs=57.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHhc-------CCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++....   .|..+.+.++++.       +++|++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   90 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVA   90 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            5789999997 9999999998888899999999998877777666654322   3555555444332       389999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      |+++|.
T Consensus        91 i~~Ag~   96 (265)
T 2o23_A           91 VNCAGI   96 (265)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999874

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.99  E-value=5e-05  Score=57.52  Aligned_cols=75  Identities=20%  Similarity=0.215  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHH-CCCeEEEEeCCccchHHHHHHc---CC--C-EEEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKA-MGVKVTVISTSPSKKSEAVERL---GA--D-SFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~-~g~~vi~~~~~~~~~~~~~~~~---g~--~-~~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |.+|..+++.+.. .|++|++++++.++.+...+.+   +.  . ...|..+.+.++++.       ++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            5788999997 9999999987777 8999999999876655544433   32  2 123555554444332       37


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus        83 id~li~~Ag~   92 (276)
T 1wma_A           83 LDVLVNNAGI   92 (276)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999874

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.98  E-value=3.9e-05  Score=57.47  Aligned_cols=75  Identities=19%  Similarity=0.367  Sum_probs=56.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHh-------cCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++...+ .|..+.+.++++       .+++|++++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn   83 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999997 9999999998888899999999998777666665664322 355665544332       247999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        84 ~Ag~   87 (245)
T 1uls_A           84 YAGI   87 (245)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.97  E-value=4e-05  Score=57.87  Aligned_cols=76  Identities=18%  Similarity=0.347  Sum_probs=58.0

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHhc-------CCccE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAAM-------GTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~-------~~~d~  109 (220)
                      -.++++||.|+ |++|..+++.+...|++|++++++.++.++..+.++....   .|..+.+.++++.       +++|+
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   85 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDI   85 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35789999997 9999999998888899999999998877777677654322   3555655444332       37999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus        86 lv~~Ag~   92 (259)
T 4e6p_A           86 LVNNAAL   92 (259)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999985

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.96  E-value=4.8e-05  Score=57.07  Aligned_cols=75  Identities=21%  Similarity=0.344  Sum_probs=56.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE----EEcCCCHHHHHHh------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS----FLVSRDQDEMQAA------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~------~~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++...    ..|..+.+.+++.      .+++|++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~l   89 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSIL   89 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcEE
Confidence            5789999997 999999999888889999999999877666655554322    2355555544433      2589999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      |+++|.
T Consensus        90 i~~Ag~   95 (254)
T 2wsb_A           90 VNSAGI   95 (254)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999984

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.95  E-value=0.00012  Score=55.47  Aligned_cols=75  Identities=17%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-----CC---EEEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-----AD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-----~~---~~~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+.     ..   ...|..+.+.++++       .+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            5789999997 999999999888889999999998766554433332     11   12355555544432       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus        86 ~id~lv~~Ag~   96 (267)
T 2gdz_A           86 RLDILVNNAGV   96 (267)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.95  E-value=1.1e-05  Score=62.43  Aligned_cols=118  Identities=15%  Similarity=0.142  Sum_probs=78.2

Q ss_pred             ccccchhhhhhhHHHh---------hcCCCCCCEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC-
Q 027664           21 APLLCAGITVYSPLRF---------YGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-   89 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~---------~~~~~~~~~vlI~G~g-~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~-   89 (220)
                      ..+||+...+...+.+         .+.--.|.+++|+|+| .+|..+++++...|++|+++.++..+.......++.. 
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~  225 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNK  225 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCC
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhc
Confidence            4567777777666666         3322478999999997 4699999999999999998888754432222223321 


Q ss_pred             EEE-cC--CCHHHHHHhcCCccEEEEcCCCccc-HHHHHhccccCCEEEEeCCCC
Q 027664           90 SFL-VS--RDQDEMQAAMGTMDGIIDTVSAVHP-LMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        90 ~~~-~~--~~~~~~~~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +.. ..  .+++.+.+....+|+||-++|.+.. +..  +.+++|-.++.+|...
T Consensus       226 ~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~vI~~--e~vk~GavVIDVgi~r  278 (320)
T 1edz_A          226 HHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPT--EYIKEGAVCINFACTK  278 (320)
T ss_dssp             CEEEEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCT--TTSCTTEEEEECSSSC
T ss_pred             ccccccccccHhHHHHHhccCCEEEECCCCCcceeCH--HHcCCCeEEEEcCCCc
Confidence            100 00  1224566666789999999998753 322  3467887888887654

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.95  E-value=9.7e-05  Score=55.24  Aligned_cols=75  Identities=20%  Similarity=0.321  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CccchHHHHHHc---CCCE---EEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~-~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++ ++++.+++.+.+   +...   ..|..+.+.++++.       ++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999997 99999999988889999999988 655544443332   4321   23555655444332       47


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        83 id~lv~nAg~   92 (246)
T 2uvd_A           83 VDILVNNAGV   92 (246)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.95  E-value=3.5e-05  Score=63.15  Aligned_cols=96  Identities=15%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      .+.+|+|+|+|.+|..++..+... |.+|++++++.++.+.+.+..+... .+|..+.+.+.+...++|+|++|++....
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~  101 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFH  101 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhh
Confidence            457899999999999999887776 6699999999877666654444432 34555555565555689999999986532


Q ss_pred             HHHHHhccccCCEEEEeC
Q 027664          120 LMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~g  137 (220)
                      ......+++.+-.++...
T Consensus       102 ~~v~~a~l~~g~~vvd~~  119 (467)
T 2axq_A          102 PNVVKSAIRTKTDVVTSS  119 (467)
T ss_dssp             HHHHHHHHHHTCEEEECS
T ss_pred             HHHHHHHHhcCCEEEEee
Confidence            223444566666666653

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.94  E-value=0.00011  Score=55.76  Aligned_cols=97  Identities=18%  Similarity=0.242  Sum_probs=71.5

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEccch-hHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~-~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ...||+...+...+++...--.|++++|+|.|. +|..+++++...|++|+++.+...                     .
T Consensus       139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~---------------------~  197 (285)
T 3l07_A          139 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT---------------------D  197 (285)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------S
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------h
Confidence            356777667777777766445899999999854 899999999999999887754321                     1


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +.+....+|++|.++|.+..+.  .+.+++|..++.+|...
T Consensus       198 L~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDvgi~~  236 (285)
T 3l07_A          198 LKSHTTKADILIVAVGKPNFIT--ADMVKEGAVVIDVGINH  236 (285)
T ss_dssp             HHHHHTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCEE
T ss_pred             HHHhcccCCEEEECCCCCCCCC--HHHcCCCcEEEEecccC
Confidence            3344557899999999875433  35678888888888653

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.94  E-value=3.9e-05  Score=56.96  Aligned_cols=97  Identities=16%  Similarity=0.245  Sum_probs=66.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-CEEE-cCCCHHHHHHhcCCccEEEEcCCCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFL-VSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-~~~~-~~~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      .+.+|||.|+ |.+|..+++.+...|.+|++++++.++...+ ...++ ..+. |..  +.+.+..+++|+||+++|...
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~-~~~~~~~~~~~Dl~--~~~~~~~~~~D~vi~~ag~~~   96 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL-RERGASDIVVANLE--EDFSHAFASIDAVVFAAGSGP   96 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHTTCSEEEECCTT--SCCGGGGTTCSEEEECCCCCT
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHH-HhCCCceEEEcccH--HHHHHHHcCCCEEEECCCCCC
Confidence            5789999998 9999999998888899999999998877665 34455 4332 322  334444568999999998531


Q ss_pred             --c-----------HHHHHhcccc--CCEEEEeCCCCC
Q 027664          119 --P-----------LMPLIGLLKS--QGKLVLLGAPEK  141 (220)
Q Consensus       119 --~-----------~~~~~~~l~~--~G~~v~~g~~~~  141 (220)
                        .           ...+++.+++  .++++.++....
T Consensus        97 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  134 (236)
T 3e8x_A           97 HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT  134 (236)
T ss_dssp             TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence              0           1223333332  378998876543

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.94  E-value=3.9e-05  Score=57.75  Aligned_cols=75  Identities=24%  Similarity=0.396  Sum_probs=56.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHhc-------CCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++++++.+.+.+.++...   ..|..+.+.++++.       +++|++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4688999997 999999999888899999999999877766655554321   23555555444332       379999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        84 v~nAg~   89 (254)
T 1hdc_A           84 VNNAGI   89 (254)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.94  E-value=4e-05  Score=59.41  Aligned_cols=86  Identities=16%  Similarity=0.226  Sum_probs=57.8

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC---ccchHHHHHHcC----CC-EEEcCCCHHHHHH
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS---PSKKSEAVERLG----AD-SFLVSRDQDEMQA  102 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~---~~~~~~~~~~~g----~~-~~~~~~~~~~~~~  102 (220)
                      .+|...+.--.++++||+|+|++|.+++..+...|+ +|+++.++   .++.++++++++    .. ..++..+.+...+
T Consensus       137 ~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~  216 (312)
T 3t4e_A          137 RAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTE  216 (312)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred             HHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHh
Confidence            444443322368899999999999999998889999 89999999   555555554443    21 2334444322233


Q ss_pred             hcCCccEEEEcCCCc
Q 027664          103 AMGTMDGIIDTVSAV  117 (220)
Q Consensus       103 ~~~~~d~v~d~~g~~  117 (220)
                      ....+|+||+|++..
T Consensus       217 ~l~~~DiIINaTp~G  231 (312)
T 3t4e_A          217 ALASADILTNGTKVG  231 (312)
T ss_dssp             HHHHCSEEEECSSTT
T ss_pred             hccCceEEEECCcCC
Confidence            334689999998753

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.93  E-value=5.1e-05  Score=57.26  Aligned_cols=75  Identities=17%  Similarity=0.305  Sum_probs=57.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.++....   .|..+.+.++++       .+++|++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   87 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDIL   87 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            5789999997 8999999998888899999999999888877777764322   355555444332       2479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        88 i~~Ag~   93 (261)
T 3n74_A           88 VNNAGI   93 (261)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999874

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.93  E-value=5.1e-05  Score=57.93  Aligned_cols=76  Identities=14%  Similarity=0.268  Sum_probs=58.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHhc-------CCccE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAAM-------GTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~-------~~~d~  109 (220)
                      -.++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.++....   .|..+.+.++++.       +++|+
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDV  104 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35789999997 9999999998888999999999998877777666664322   3555655444332       47999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus       105 lv~nAg~  111 (277)
T 4dqx_A          105 LVNNAGF  111 (277)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999984

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.92  E-value=1.6e-05  Score=59.22  Aligned_cols=97  Identities=13%  Similarity=0.168  Sum_probs=68.1

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      .++|||.|+ |.+|..+++.+...| .+|+++++++++...+. ..++.. ..|..+.+.+.+...++|++|.++|....
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~  101 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY-PTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDL  101 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC-CTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTH
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc-cCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCch
Confidence            367999997 999999999999999 79999999876543321 112222 23566677787877899999999987532


Q ss_pred             ---HHHHHhcccc--CCEEEEeCCCC
Q 027664          120 ---LMPLIGLLKS--QGKLVLLGAPE  140 (220)
Q Consensus       120 ---~~~~~~~l~~--~G~~v~~g~~~  140 (220)
                         .+.++..++.  .++++.++...
T Consensus       102 ~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A          102 DIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             hHHHHHHHHHHHHcCCCEEEEEecce
Confidence               2334555544  36898887644

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.92  E-value=0.00022  Score=54.79  Aligned_cols=98  Identities=14%  Similarity=0.216  Sum_probs=66.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHH-H---HHHcCCCEE---EcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSE-A---VERLGADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~-~---~~~~g~~~~---~~~~~~~~~~~~-------~~~  106 (220)
                      .|+++||.|+ |++|..+++.+...|++|++++++.++..+ .   .+..+....   .|..+.+.++++       .++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  125 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS  125 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 999999999888899999999988653222 2   223343322   255555544332       247


Q ss_pred             ccEEEEcCCCcc--------------------------cHHHHHhccccCCEEEEeCCC
Q 027664          107 MDGIIDTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~v~d~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +|++++++|...                          ..+.++..++++|+++.++..
T Consensus       126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~  184 (291)
T 3ijr_A          126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI  184 (291)
T ss_dssp             CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred             CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence            999999987421                          113345566778999988764

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.92  E-value=3.8e-05  Score=56.31  Aligned_cols=93  Identities=15%  Similarity=0.175  Sum_probs=65.6

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCC-HHHHHHhcCCccEEEEcCCCcc---
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRD-QDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      +|||.|+ |.+|..+++.+...|.+|++++++.++....   .+.+.+ .|..+ .+.+.+..+++|+||.++|...   
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~   78 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSL   78 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTTSSC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECCcCCCCCc
Confidence            6899997 9999999999988999999999997654322   223222 35566 6677777779999999998642   


Q ss_pred             ------cHHHHHhccccC--CEEEEeCCCC
Q 027664          119 ------PLMPLIGLLKSQ--GKLVLLGAPE  140 (220)
Q Consensus       119 ------~~~~~~~~l~~~--G~~v~~g~~~  140 (220)
                            ....+++.++..  ++++.++...
T Consensus        79 ~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  108 (219)
T 3dqp_A           79 LKVDLYGAVKLMQAAEKAEVKRFILLSTIF  108 (219)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             EeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence                  123344444433  5888877654

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.92  E-value=0.00012  Score=55.62  Aligned_cols=96  Identities=21%  Similarity=0.253  Sum_probs=71.1

Q ss_pred             cccchhhhhhhHHHhhcCCCCCCEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH
Q 027664           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  100 (220)
                      ..||+...+...+++...--.|++++|+|.| .+|..+++++...|++|+++.+....                     +
T Consensus       139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~---------------------L  197 (285)
T 3p2o_A          139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKD---------------------L  197 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSC---------------------H
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchh---------------------H
Confidence            4666666666777766544589999999985 58999999999999998887654321                     3


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .+....+|++|.++|.+..+.  .+.+++|..++.+|...
T Consensus       198 ~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDVgi~~  235 (285)
T 3p2o_A          198 SLYTRQADLIIVAAGCVNLLR--SDMVKEGVIVVDVGINR  235 (285)
T ss_dssp             HHHHTTCSEEEECSSCTTCBC--GGGSCTTEEEEECCCEE
T ss_pred             HHHhhcCCEEEECCCCCCcCC--HHHcCCCeEEEEeccCc
Confidence            344457899999999875432  35678888888888653

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.91  E-value=3.5e-05  Score=57.84  Aligned_cols=75  Identities=23%  Similarity=0.337  Sum_probs=57.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHhc-------CCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      .|+++||.|+ |++|..+++.+...|++|+++++++++.+++.+.++..   ...|..+.+.++++.       +++|++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   87 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDIL   87 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5789999997 99999999988889999999999988777666655432   224566655444332       489999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        88 v~nAg~   93 (248)
T 3op4_A           88 VNNAGI   93 (248)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999984

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.91  E-value=4.5e-05  Score=57.50  Aligned_cols=75  Identities=21%  Similarity=0.338  Sum_probs=49.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.++..+.++...   ..|..+.+.++++       .+++|++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   85 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHGL   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5789999997 999999999888899999999999887776666655321   1355555444333       2489999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        86 v~nAg~   91 (257)
T 3tpc_A           86 VNCAGT   91 (257)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999884

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.91  E-value=7e-05  Score=54.76  Aligned_cols=91  Identities=21%  Similarity=0.314  Sum_probs=62.6

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCcc----
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVH----  118 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~----  118 (220)
                      +|||.|+ |.+|..+++.+...|.+|+++++++++...+.  .+.+.+ .|..+.+.  +...++|+||.++|...    
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~   77 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTL--SDLSDQNVVVDAYGISPDEAE   77 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCH--HHHTTCSEEEECCCSSTTTTT
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhh--hhhcCCCEEEECCcCCccccc
Confidence            6899997 99999999999889999999999987655442  344332 23333333  44468999999998641    


Q ss_pred             ----cHHHHHhcccc--CCEEEEeCCC
Q 027664          119 ----PLMPLIGLLKS--QGKLVLLGAP  139 (220)
Q Consensus       119 ----~~~~~~~~l~~--~G~~v~~g~~  139 (220)
                          ....+++.++.  .++++.++..
T Consensus        78 ~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           78 KHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             SHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             hHHHHHHHHHHHHHhcCCceEEEEecc
Confidence                12345555554  3688877654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.91  E-value=3.9e-05  Score=57.77  Aligned_cols=75  Identities=13%  Similarity=0.175  Sum_probs=56.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      +|+.+||.|+ +++|.++++.+...|++|+++++++++.++..++   .|.+.   ..|-.+++.++++       .+++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5799999997 8999999998888999999999998877666554   34432   2355665554433       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++.+|-
T Consensus        86 DiLVNNAGi   94 (254)
T 4fn4_A           86 DVLCNNAGI   94 (254)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999873

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.91  E-value=0.00015  Score=51.08  Aligned_cols=98  Identities=15%  Similarity=0.181  Sum_probs=67.6

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCHHHHHHhcCCccEEEEc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      +.++++||.+|+|. |..+..+++.. +.++++++.+++..+.+.+.   .+.+  ..+..+..+.+....+.||+|+..
T Consensus        23 ~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~  101 (178)
T 3hm2_A           23 PKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIG  101 (178)
T ss_dssp             CCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEEC
T ss_pred             ccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEEC
Confidence            68899999999985 88899999887 45999999998766555432   3433  223222222222222579999965


Q ss_pred             CCCc--ccHHHHHhccccCCEEEEeCC
Q 027664          114 VSAV--HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 ~g~~--~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      .+-.  ..++.+.+.|+++|+++....
T Consensus       102 ~~~~~~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A          102 GGLTAPGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             C-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CcccHHHHHHHHHHhcCCCCEEEEEee
Confidence            5433  358889999999999987643

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.90  E-value=5.8e-05  Score=57.04  Aligned_cols=75  Identities=20%  Similarity=0.221  Sum_probs=55.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHhc-------CCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++..   ...|..+.+.++++.       +++|++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   85 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5688999997 99999999988888999999999987766665554321   123556655444332       379999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      |+++|.
T Consensus        86 v~~Ag~   91 (260)
T 1nff_A           86 VNNAGI   91 (260)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999884

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.90  E-value=5.8e-05  Score=56.60  Aligned_cols=74  Identities=15%  Similarity=0.092  Sum_probs=55.6

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--CEEEcCCCHHHHHHh-------cCCccEEEE
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSFLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      +++|||.|+ +++|.++++.+...|++|+++++++++.+++.++.+-  ....|..+++.++++       .+++|++++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            478999997 8999999999999999999999998877777655432  122355565544433       248999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        82 NAG~   85 (247)
T 3ged_A           82 NACR   85 (247)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9875

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.90  E-value=0.00019  Score=54.29  Aligned_cols=99  Identities=12%  Similarity=0.179  Sum_probs=64.7

Q ss_pred             CCCEEEEEcc-ch--hHHHHHHHHHHCCCeEEEEeCCccchHH---HHHHcCC---C-EEEcCCCHHHHHHh-------c
Q 027664           42 PGMHVGVVGL-GG--LGHVAVKFAKAMGVKVTVISTSPSKKSE---AVERLGA---D-SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~--~G~~~~~la~~~g~~vi~~~~~~~~~~~---~~~~~g~---~-~~~~~~~~~~~~~~-------~  104 (220)
                      .++++||.|+ |.  +|..+++.+...|++|+++++++...+.   +.+.++.   . ...|..+.+.++++       .
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            5789999996 66  9999998888889999999888643332   2223332   1 12355554443332       2


Q ss_pred             CCccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          105 GTMDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       105 ~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +++|++++++|...                             ..+.+...++++|+++.++...
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  150 (266)
T 3oig_A           86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLG  150 (266)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGG
T ss_pred             CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence            47999999987421                             1123455667789999887654

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.90  E-value=4.9e-05  Score=58.41  Aligned_cols=76  Identities=18%  Similarity=0.203  Sum_probs=59.1

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHhc---CCccEEEEc
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAAM---GTMDGIIDT  113 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~---~~~d~v~d~  113 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++...   ..|..+.+.++++.   +++|+++++
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~n   93 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLINN   93 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEEEC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEEEC
Confidence            46789999997 999999999888889999999999888777766665322   23556666666554   378999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        94 Ag~   96 (291)
T 3rd5_A           94 AGI   96 (291)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            984

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.89  E-value=8.6e-05  Score=56.10  Aligned_cols=75  Identities=16%  Similarity=0.277  Sum_probs=54.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCCE---EEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADS---FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+    +...   ..|..+.+.++++.       ++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG   85 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999997 99999999988888999999999877665544433    4322   13555655444332       47


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        86 id~lv~~Ag~   95 (263)
T 3ai3_A           86 ADILVNNAGT   95 (263)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.89  E-value=8.8e-05  Score=56.58  Aligned_cols=76  Identities=14%  Similarity=0.222  Sum_probs=56.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHhc-------CC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~~-------~~  106 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+   +..   ...|..+.+.++++.       ++
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999997 99999999988888999999999988776665443   321   223556655444332       38


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       110 iD~lvnnAg~  119 (276)
T 3r1i_A          110 IDIAVCNAGI  119 (276)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.89  E-value=7.7e-05  Score=56.39  Aligned_cols=75  Identities=19%  Similarity=0.207  Sum_probs=55.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC--CC-EEEcCCCHHHHHHhc-------CCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG--AD-SFLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g--~~-~~~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+.  .. ...|..+.+.++++.       +++|++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~l   90 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLL   90 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5789999997 999999999888899999999998877666655553  22 124556655444332       379999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      |+++|.
T Consensus        91 v~~Ag~   96 (263)
T 3ak4_A           91 CANAGV   96 (263)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999984

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.89  E-value=1.6e-05  Score=59.43  Aligned_cols=99  Identities=15%  Similarity=0.167  Sum_probs=69.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-CEEEcCCCHHHHHHhc---CCccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAM---GTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~---~~~d~v~d~~g~  116 (220)
                      .|+++||.|+ +++|.++++.+...|++|++++++.++.+... .-.+ ....|..+++.++++.   +++|++++++|-
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPR-HPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCC-CTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhh-cCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            6899999997 89999999999999999999999887654321 1111 2234566666665543   489999999985


Q ss_pred             ccc-----------------------HHHHHhccc-cCCEEEEeCCCCC
Q 027664          117 VHP-----------------------LMPLIGLLK-SQGKLVLLGAPEK  141 (220)
Q Consensus       117 ~~~-----------------------~~~~~~~l~-~~G~~v~~g~~~~  141 (220)
                      ...                       .+.+...++ ++|+||.++...+
T Consensus        89 ~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~  137 (242)
T 4b79_A           89 SRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYS  137 (242)
T ss_dssp             CCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGG
T ss_pred             CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            311                       123344553 5799999876543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.89  E-value=2.2e-05  Score=59.01  Aligned_cols=78  Identities=27%  Similarity=0.395  Sum_probs=53.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc-------------------cchHHHHHHcC----CCEE--EcC-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP-------------------SKKSEAVERLG----ADSF--LVS-   94 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~-------------------~~~~~~~~~~g----~~~~--~~~-   94 (220)
                      .+.+|+|+|+|++|..+++.+...|+ ++++++...                   .|.+.+++.+.    ...+  ++. 
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            35789999999999999999988898 888888776                   45444433332    1111  111 


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCccc
Q 027664           95 RDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        95 ~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      -+.+.+.++..++|+|++|+++...
T Consensus       110 ~~~~~~~~~~~~~DvVi~~~d~~~~  134 (249)
T 1jw9_B          110 LDDAELAALIAEHDLVLDCTDNVAV  134 (249)
T ss_dssp             CCHHHHHHHHHTSSEEEECCSSHHH
T ss_pred             CCHhHHHHHHhCCCEEEEeCCCHHH
Confidence            1223344555689999999987643

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.89  E-value=9e-05  Score=56.22  Aligned_cols=76  Identities=24%  Similarity=0.318  Sum_probs=55.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCCE---EEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~~~~-------~~  105 (220)
                      -.++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+    +...   ..|..+.+.++++       .+
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   98 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35789999997 99999999988888999999999877665554433    4322   2355665544332       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++|+++|.
T Consensus        99 ~iD~lvnnAg~  109 (267)
T 1vl8_A           99 KLDTVVNAAGI  109 (267)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999985

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.89  E-value=0.00017  Score=54.72  Aligned_cols=97  Identities=18%  Similarity=0.118  Sum_probs=71.9

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ...||+...+...+++.+.--.|++++|+|.| .+|..+++++...|++|+++.+....                     
T Consensus       139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~---------------------  197 (286)
T 4a5o_A          139 LLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRD---------------------  197 (286)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSC---------------------
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcC---------------------
Confidence            35677767777777776644589999999974 58999999999999999887653221                     


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +.+....+|++|.++|.+..+.  .+.+++|..++.+|...
T Consensus       198 L~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          198 LADHVSRADLVVVAAGKPGLVK--GEWIKEGAIVIDVGINR  236 (286)
T ss_dssp             HHHHHHTCSEEEECCCCTTCBC--GGGSCTTCEEEECCSCS
T ss_pred             HHHHhccCCEEEECCCCCCCCC--HHHcCCCeEEEEecccc
Confidence            2233447899999999875433  35678888999998754

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.89  E-value=0.00017  Score=54.51  Aligned_cols=95  Identities=12%  Similarity=0.092  Sum_probs=70.4

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ...||+...+...+++.+  -.|++++|+|.| .+|..+++++...|++|+++.+....                     
T Consensus       130 ~~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~---------------------  186 (276)
T 3ngx_A          130 FLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKD---------------------  186 (276)
T ss_dssp             SSCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSC---------------------
T ss_pred             CCCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCccc---------------------
Confidence            356777777777777776  679999999985 68999999999999999888654322                     


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +.+....+|++|.++|.+..+..  +.+++|..++.+|...
T Consensus       187 L~~~~~~ADIVI~Avg~p~~I~~--~~vk~GavVIDvgi~~  225 (276)
T 3ngx_A          187 IGSMTRSSKIVVVAVGRPGFLNR--EMVTPGSVVIDVGINY  225 (276)
T ss_dssp             HHHHHHHSSEEEECSSCTTCBCG--GGCCTTCEEEECCCEE
T ss_pred             HHHhhccCCEEEECCCCCccccH--hhccCCcEEEEeccCc
Confidence            22333457999999998754432  4578888888888653

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.88  E-value=0.00013  Score=55.78  Aligned_cols=97  Identities=19%  Similarity=0.222  Sum_probs=71.2

Q ss_pred             cccchhhhhhhHHHhhcCCCCCCEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH
Q 027664           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  100 (220)
                      ..||+...+...+++.+.--.|++++|+|.| .+|..+++++...|++|+++.+.....+                   +
T Consensus       144 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~-------------------l  204 (300)
T 4a26_A          144 FTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED-------------------M  204 (300)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH-------------------H
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch-------------------h
Confidence            4677777777777776644589999999985 5899999999999999988876332111                   1


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      .+....+|++|.++|.+..+..  +.++++..++.+|..
T Consensus       205 ~~~~~~ADIVI~Avg~p~~I~~--~~vk~GavVIDvgi~  241 (300)
T 4a26_A          205 IDYLRTADIVIAAMGQPGYVKG--EWIKEGAAVVDVGTT  241 (300)
T ss_dssp             HHHHHTCSEEEECSCCTTCBCG--GGSCTTCEEEECCCE
T ss_pred             hhhhccCCEEEECCCCCCCCcH--HhcCCCcEEEEEecc
Confidence            1334578999999998754432  457888888988864

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.88  E-value=0.00014  Score=54.17  Aligned_cols=75  Identities=24%  Similarity=0.373  Sum_probs=56.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-CCCE-EEcCCCHHHHHHhcC---CccEEEEcCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-GADS-FLVSRDQDEMQAAMG---TMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~---~~d~v~d~~g  115 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+.. +.+. ..|..+.+.+++...   ++|++|+++|
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag   85 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAA   85 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECCc
Confidence            5689999997 99999999988888999999999887666655444 3322 235566666665543   6899999998


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        86 ~   86 (244)
T 1cyd_A           86 L   86 (244)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.88  E-value=9.5e-05  Score=57.04  Aligned_cols=76  Identities=24%  Similarity=0.316  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---C-CC---EEEcCCCH-HHHHHh-------c
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G-AD---SFLVSRDQ-DEMQAA-------M  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g-~~---~~~~~~~~-~~~~~~-------~  104 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++++.++.++..+.+   + ..   ...|..+. +.++.+       .
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            45789999997 99999999888888999999999987766554443   2 11   12355554 433322       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++|+++|.
T Consensus        90 g~iD~lv~nAg~  101 (311)
T 3o26_A           90 GKLDILVNNAGV  101 (311)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            489999999985

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.87  E-value=0.00019  Score=54.55  Aligned_cols=99  Identities=19%  Similarity=0.323  Sum_probs=65.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc-cchHHHHH---HcCCCE---EEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~-~~~~~~~~---~~g~~~---~~~~~~~~~~~~~-------~~  105 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++. ++.+.+.+   ..+...   ..|..+.+.++++       .+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            36789999997 8999999998888999999986654 33333333   234322   2355555544333       24


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCC
Q 027664          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       106 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ++|++++++|...                         ..+.+...++++|+++.++..
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A          109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence            7999999998521                         113345566778999988764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.87  E-value=0.00015  Score=55.49  Aligned_cols=99  Identities=17%  Similarity=0.229  Sum_probs=65.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------ccchHHHH---HHcCCCE---EEcCCCHHHHH
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS------------PSKKSEAV---ERLGADS---FLVSRDQDEMQ  101 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~------------~~~~~~~~---~~~g~~~---~~~~~~~~~~~  101 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++            .++.++..   +..+...   ..|..+.+.++
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence            35789999997 899999999888899999999876            33333322   2234322   23555655443


Q ss_pred             Hhc-------CCccEEEEcCCCcc-----------------------cHHHHHhccccCCEEEEeCCC
Q 027664          102 AAM-------GTMDGIIDTVSAVH-----------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       102 ~~~-------~~~d~v~d~~g~~~-----------------------~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ++.       +++|++++++|...                       ..+.++..++++|+++.++..
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  155 (287)
T 3pxx_A           88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence            332       47999999988521                       013345566778999988754

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.87  E-value=0.00012  Score=55.78  Aligned_cols=75  Identities=20%  Similarity=0.275  Sum_probs=54.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------c-CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------M-GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~-~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+   +..   ...|..+.+.++++       . ++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   99 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   99 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 99999999988888999999999977655544332   432   12355555544332       2 57


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       100 id~lv~nAg~  109 (273)
T 1ae1_A          100 LNILVNNAGV  109 (273)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999985

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.86  E-value=6.3e-05  Score=56.34  Aligned_cols=77  Identities=16%  Similarity=0.248  Sum_probs=58.4

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHhc---CCccEEEE
Q 027664           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAAM---GTMDGIID  112 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~---~~~d~v~d  112 (220)
                      ..+++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++....   .|..+.+.+.++.   +++|++++
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~   90 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILVC   90 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEEE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEEE
Confidence            357899999997 9999999998888899999999998887777666654322   3444555555443   37999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        91 ~Ag~   94 (249)
T 3f9i_A           91 NAGI   94 (249)
T ss_dssp             CCC-
T ss_pred             CCCC
Confidence            9884

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.86  E-value=6.1e-05  Score=57.60  Aligned_cols=95  Identities=20%  Similarity=0.166  Sum_probs=67.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      +|||.|+ |.+|..+++.+... |.+|+++++++++...+ ...+++.+ .|..+.+.+.+...++|+||.+++...   
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~   80 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHPSF   80 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCSHH
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCccch
Confidence            4899997 99999999887776 88999999998765433 22344333 466677778888889999999998632   


Q ss_pred             ----cHHHHHhccccC--CEEEEeCCCC
Q 027664          119 ----PLMPLIGLLKSQ--GKLVLLGAPE  140 (220)
Q Consensus       119 ----~~~~~~~~l~~~--G~~v~~g~~~  140 (220)
                          ....+++.++..  ++++.++...
T Consensus        81 ~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           81 KRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             hhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence                123445555443  4788776544

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.86  E-value=8.2e-05  Score=60.78  Aligned_cols=94  Identities=15%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-C-EEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-D-SFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-~-~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      +.+|+|+|+|.+|..+++.+...|.+|++++++.++.+.+.+.++. . ...|..+.+.+.+...++|+|++|++.....
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~   82 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA   82 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch
Confidence            5789999999999999988888899999999887666555444432 1 1235555556666667899999999864322


Q ss_pred             HHHHhccccCCEEEEe
Q 027664          121 MPLIGLLKSQGKLVLL  136 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~  136 (220)
                      .....++..+..++..
T Consensus        83 ~i~~a~l~~g~~vvd~   98 (450)
T 1ff9_A           83 TVIKSAIRQKKHVVTT   98 (450)
T ss_dssp             HHHHHHHHHTCEEEES
T ss_pred             HHHHHHHhCCCeEEEe
Confidence            3344556666666654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.86  E-value=0.0001  Score=55.41  Aligned_cols=75  Identities=25%  Similarity=0.267  Sum_probs=56.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHhc------CCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAAM------GTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~~------~~~d  108 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+   +..   ...|..+.+.++++.      +++|
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id   85 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLE   85 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCce
Confidence            5789999997 89999999988888999999999988777665544   332   123555554443322      5899


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++++++|.
T Consensus        86 ~lv~nAg~   93 (252)
T 3h7a_A           86 VTIFNVGA   93 (252)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999985

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.85  E-value=0.0001  Score=56.13  Aligned_cols=93  Identities=14%  Similarity=0.059  Sum_probs=64.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCC--CEEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA--DSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      -.+++++|+|+|++|.+++..+...|+ +|+++.++.++.+++++.++.  ..+....+   +..  ..+|+||+|++..
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~---l~~--~~~DivInaTp~g  192 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEA---LEG--QSFDIVVNATSAS  192 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG---GTT--CCCSEEEECSSGG
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH---hcc--cCCCEEEECCCCC
Confidence            368899999999999999998888997 999999999888888777663  22222221   111  5799999998753


Q ss_pred             ccH---HHHHhccccCCEEEEeCC
Q 027664          118 HPL---MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       118 ~~~---~~~~~~l~~~G~~v~~g~  138 (220)
                      ..-   ......++++..++.+..
T Consensus       193 m~~~~~~i~~~~l~~~~~V~DlvY  216 (272)
T 3pwz_A          193 LTADLPPLPADVLGEAALAYELAY  216 (272)
T ss_dssp             GGTCCCCCCGGGGTTCSEEEESSC
T ss_pred             CCCCCCCCCHHHhCcCCEEEEeec
Confidence            110   012245666666666543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.85  E-value=0.00013  Score=55.05  Aligned_cols=98  Identities=16%  Similarity=0.263  Sum_probs=63.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CccchHHHHHH---cCCC---EEEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVER---LGAD---SFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~-~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|+++.+ +.++.+...+.   .+..   ...|..+.+.++++.       ++
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE   86 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            5789999997 89999999988888999998844 44443333332   2322   123555655444332       47


Q ss_pred             ccEEEEcCCCc---c-----------------------cHHHHHhccccCCEEEEeCCC
Q 027664          107 MDGIIDTVSAV---H-----------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~v~d~~g~~---~-----------------------~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +|++++++|..   .                       ..+.++..++++|+++.++..
T Consensus        87 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~  145 (259)
T 3edm_A           87 IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQ  145 (259)
T ss_dssp             EEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             CCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCH
Confidence            99999998742   0                       012344566668899988754

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.85  E-value=0.00011  Score=55.62  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=54.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-----CCCE---EEcCCCHHHHHHhc-------C
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GADS---FLVSRDQDEMQAAM-------G  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-----g~~~---~~~~~~~~~~~~~~-------~  105 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+     +...   ..|..+.+.++++.       +
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5789999997 99999999988888999999999887655544332     3322   23555655444332       4


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++|+++|.
T Consensus        92 ~id~lv~nAg~  102 (267)
T 1iy8_A           92 RIDGFFNNAGI  102 (267)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999874

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.85  E-value=5e-05  Score=57.46  Aligned_cols=75  Identities=11%  Similarity=0.102  Sum_probs=55.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHh-------cCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++..+..+..++..+ .|..+.+.++++       .+++|++++
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~  105 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVH  105 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            5678999997 9999999998888899999999998765555556665333 355665544332       247999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus       106 nAg~  109 (260)
T 3gem_A          106 NASE  109 (260)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9984

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.85  E-value=0.00016  Score=54.13  Aligned_cols=75  Identities=15%  Similarity=0.255  Sum_probs=54.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc-cchHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~-~~~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++. ++.++..+..+...   ..|..+.+.++++       .+++|+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   85 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            4788999997 9999999998888899999999987 55544334455322   2355565544433       248999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus        86 lv~nAg~   92 (249)
T 2ew8_A           86 LVNNAGI   92 (249)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999984

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.84  E-value=6.4e-05  Score=55.93  Aligned_cols=74  Identities=16%  Similarity=0.166  Sum_probs=55.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHh-------cCCccEEE
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~-------~~~~d~v~  111 (220)
                      ++++||.|+ |++|..+++.+...|++|++++++.++.++..+.++..   ...|..+.+.++++       .+++|+++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv   82 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL   82 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            578999997 99999999888888999999999988777766655432   22355555444332       24799999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        83 nnAg~   87 (235)
T 3l6e_A           83 HCAGT   87 (235)
T ss_dssp             EECCC
T ss_pred             ECCCC
Confidence            99885

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.84  E-value=1.6e-05  Score=60.32  Aligned_cols=95  Identities=21%  Similarity=0.215  Sum_probs=67.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      .++.+||.+|+|. |..+..+++.. |.++++++.++...+.+.+...-..++. .+...+....+.||+|+.. .....
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~d~~~~~~~~~~fD~v~~~-~~~~~  160 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCV-ASSHRLPFSDTSMDAIIRI-YAPCK  160 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEE-CCTTSCSBCTTCEEEEEEE-SCCCC
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEE-cchhhCCCCCCceeEEEEe-CChhh
Confidence            5788999999987 99899999886 6799999999887776654432222222 1211111111379999954 44457


Q ss_pred             HHHHHhccccCCEEEEeCC
Q 027664          120 LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~g~  138 (220)
                      +..+.+.|+++|+++....
T Consensus       161 l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          161 AEELARVVKPGGWVITATP  179 (269)
T ss_dssp             HHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHhcCCCcEEEEEEc
Confidence            8999999999999988754

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.84  E-value=0.00012  Score=55.18  Aligned_cols=75  Identities=19%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHhc--------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM--------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~--------~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++++++.+...+.+   +...   ..|..+.+.++++.        ++
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   87 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   87 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 99999999988888999999999877655544433   3221   23555655444332        57


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        88 id~lv~~Ag~   97 (260)
T 2ae2_A           88 LNILVNNAGI   97 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.84  E-value=7.4e-05  Score=56.34  Aligned_cols=75  Identities=20%  Similarity=0.282  Sum_probs=56.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC---CC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---AD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g---~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+.   ..   ...|..+.+.++++       .+++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   84 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI   84 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 999999999888899999999999887777655542   22   12355565544333       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        85 d~lv~nAg~   93 (257)
T 3imf_A           85 DILINNAAG   93 (257)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.84  E-value=6.3e-05  Score=55.38  Aligned_cols=95  Identities=17%  Similarity=0.212  Sum_probs=65.2

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .+|||.|+ |.+|..+++.+...|.+|+++++++++...+.  -+.+.+ .|..+.+.+.+...++|+||.++|...   
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~   82 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--EHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWNNP   82 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC--TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-----
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc--CceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCCCCh
Confidence            57999997 99999999999889999999999976543221  122222 355566777777779999999998641   


Q ss_pred             --------cHHHHHhccccC--CEEEEeCCCC
Q 027664          119 --------PLMPLIGLLKSQ--GKLVLLGAPE  140 (220)
Q Consensus       119 --------~~~~~~~~l~~~--G~~v~~g~~~  140 (220)
                              ....+++.+++.  ++++.++...
T Consensus        83 ~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           83 DIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             -CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence                    122344444443  4888876543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.84  E-value=0.00013  Score=55.78  Aligned_cols=97  Identities=13%  Similarity=0.105  Sum_probs=71.6

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ..+||+.......+.+.+.--.|++++|+|.| .+|.-+++++...|++|+++.+...                     .
T Consensus       143 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~---------------------~  201 (301)
T 1a4i_A          143 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA---------------------H  201 (301)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------S
T ss_pred             CccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcc---------------------c
Confidence            35677666666666666533579999999997 5899999999999999988764321                     2


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +.+....+|+||-++|.+..+.  -+.+++|..++.+|...
T Consensus       202 L~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDVgi~~  240 (301)
T 1a4i_A          202 LDEEVNKGDILVVATGQPEMVK--GEWIKPGAIVIDCGINY  240 (301)
T ss_dssp             HHHHHTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCBC
T ss_pred             HHHHhccCCEEEECCCCcccCC--HHHcCCCcEEEEccCCC
Confidence            3444557899999999885432  34578899999998753

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.84  E-value=0.00026  Score=54.49  Aligned_cols=100  Identities=19%  Similarity=0.211  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCccchHH---HHHHcCCCEE--EcCCCHHHHHHhc-------C
Q 027664           41 KPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSKKSE---AVERLGADSF--LVSRDQDEMQAAM-------G  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g--~~G~~~~~la~~~g~~vi~~~~~~~~~~~---~~~~~g~~~~--~~~~~~~~~~~~~-------~  105 (220)
                      -.++++||.|+ |  ++|..+++.+...|++|++++++++..+.   +.+..+....  .|..+.+.++++.       +
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35789999997 5  99999998888889999999998654332   2233343222  3556655444332       4


Q ss_pred             CccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          106 TMDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ++|++++++|...                             ..+.++..++++|+++.++...
T Consensus       108 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~  171 (296)
T 3k31_A          108 SLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYG  171 (296)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGG
T ss_pred             CCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehh
Confidence            7999999998531                             0123445666789999887654

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.84  E-value=8.1e-05  Score=56.93  Aligned_cols=75  Identities=24%  Similarity=0.311  Sum_probs=57.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .|+++||.|+ |++|..+++.+...|++|++++++.++.+++.+.++....   .|..+.+.++++       .+++|++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l   83 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTL   83 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            4789999997 9999999998888899999999998887777666654322   355555443332       2479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        84 vnnAg~   89 (281)
T 3zv4_A           84 IPNAGI   89 (281)
T ss_dssp             ECCCCC
T ss_pred             EECCCc
Confidence            999984

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.83  E-value=8.5e-05  Score=55.09  Aligned_cols=74  Identities=15%  Similarity=0.247  Sum_probs=55.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCCEE---EcCCCHHHHHHhc-------CCc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADSF---LVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~~~---~~~~~~~~~~~~~-------~~~  107 (220)
                      ++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+    +....   .|..+.+.++++.       +++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDV   81 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence            678999997 99999999988889999999999987766554432    33222   3566666555543       379


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        82 d~li~~Ag~   90 (235)
T 3l77_A           82 DVVVANAGL   90 (235)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999885

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.83  E-value=6.8e-05  Score=54.75  Aligned_cols=99  Identities=30%  Similarity=0.324  Sum_probs=67.8

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHHH---cCCCEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVER---LGADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .+.++++||.+|+| .|..+..+++..|  .+|+.++.+++..+.+.+.   .+.+.+ +...+........+.||+|+.
T Consensus        74 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  152 (215)
T 2yxe_A           74 DLKPGMKVLEIGTG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYT  152 (215)
T ss_dssp             TCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEE
T ss_pred             CCCCCCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEE
Confidence            46889999999998 4888999998876  6999999998766555433   233211 111221110011247999998


Q ss_pred             cCCCcccHHHHHhccccCCEEEEeCC
Q 027664          113 TVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      +.+-....+.+.+.|+++|+++..-.
T Consensus       153 ~~~~~~~~~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          153 TAAGPKIPEPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             SSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             CCchHHHHHHHHHHcCCCcEEEEEEC
Confidence            77655556788999999999987643

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.83  E-value=0.00025  Score=54.21  Aligned_cols=99  Identities=21%  Similarity=0.265  Sum_probs=65.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHH---HHcCCCEE---EcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAV---ERLGADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~---~~~g~~~~---~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++ .+.+.   +..+.+..   .|..+.+.++++       .++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  107 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK  107 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 999999999888889999999988653 22221   23343222   355555443332       247


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          107 MDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +|++++++|...                         ..+.+...++++|+++.++...
T Consensus       108 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  166 (283)
T 1g0o_A          108 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT  166 (283)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechh
Confidence            999999998521                         0133445556679999987654

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.83  E-value=5.8e-05  Score=54.51  Aligned_cols=95  Identities=16%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~~--  119 (220)
                      .+|+|.|+ |.+|..+++.+...|.+|+++++++++.... ...+...+ .|..+.+.+.+..+++|++|.++|....  
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~   82 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLS   82 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCCS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc-cCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCCCCC
Confidence            68999998 9999999998888899999999987654321 01123222 3555666777777789999999985421  


Q ss_pred             --------HHHHHhcccc--CCEEEEeCCC
Q 027664          120 --------LMPLIGLLKS--QGKLVLLGAP  139 (220)
Q Consensus       120 --------~~~~~~~l~~--~G~~v~~g~~  139 (220)
                              ...+++.+++  .++++.++..
T Consensus        83 ~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           83 PTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             ccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence                    2333444433  3688877654

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.82  E-value=0.00016  Score=54.89  Aligned_cols=75  Identities=16%  Similarity=0.353  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHHHHcCC--CE-EEcCCCHHHHHHh-------cC--
Q 027664           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGA--DS-FLVSRDQDEMQAA-------MG--  105 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~~~~g~--~~-~~~~~~~~~~~~~-------~~--  105 (220)
                      .++++||.|+   |++|..+++.+...|++|++++++.++ .+.+.+.++.  .. ..|..+.+.++++       .+  
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~   85 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG   85 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5688999984   799999999888889999999988755 3555445542  22 2455665544332       23  


Q ss_pred             -CccEEEEcCCC
Q 027664          106 -TMDGIIDTVSA  116 (220)
Q Consensus       106 -~~d~v~d~~g~  116 (220)
                       ++|++++++|.
T Consensus        86 ~~iD~lv~nAg~   97 (269)
T 2h7i_A           86 NKLDGVVHSIGF   97 (269)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCceEEEECCcc
Confidence             79999999874

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.82  E-value=8.7e-05  Score=56.01  Aligned_cols=75  Identities=19%  Similarity=0.218  Sum_probs=54.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-----C--CCE-EEcCCCHHHHHHhcC------C
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----G--ADS-FLVSRDQDEMQAAMG------T  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-----g--~~~-~~~~~~~~~~~~~~~------~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+     +  +.. ..|..+.+.++++..      +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4688999997 99999999888888999999999877665554433     2  111 235566555443321      5


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus        86 id~lv~~Ag~   95 (260)
T 2z1n_A           86 ADILVYSTGG   95 (260)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.82  E-value=0.00015  Score=54.36  Aligned_cols=75  Identities=23%  Similarity=0.341  Sum_probs=54.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +...   ..|..+.+.++++       .+++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   85 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL   85 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999997 99999999988888999999999887666554433   4321   2355565544332       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        86 d~lv~nAg~   94 (247)
T 2jah_A           86 DILVNNAGI   94 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.82  E-value=0.00015  Score=54.29  Aligned_cols=75  Identities=17%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC----CC-EEEcCCCHHHHHHhc-------CCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----AD-SFLVSRDQDEMQAAM-------GTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g----~~-~~~~~~~~~~~~~~~-------~~~d  108 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+.    .. ...|..+.+.++++.       +++|
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   84 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            5688999997 999999999888889999999998776665555443    11 123555555444332       3699


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|+++|.
T Consensus        85 ~li~~Ag~   92 (251)
T 1zk4_A           85 TLVNNAGI   92 (251)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999884

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.82  E-value=0.00012  Score=55.93  Aligned_cols=75  Identities=19%  Similarity=0.268  Sum_probs=54.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++++++.+.+.+.+   +...   ..|..+.+.++++       .+++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i  100 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV  100 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5689999997 99999999988888999999999887655544433   4321   2355555544332       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus       101 D~lv~~Ag~  109 (277)
T 2rhc_B          101 DVLVNNAGR  109 (277)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.82  E-value=2.3e-05  Score=60.02  Aligned_cols=102  Identities=16%  Similarity=0.147  Sum_probs=65.0

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCC-----CE-EEcCCCHHHHHHhc
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA-----DS-FLVSRDQDEMQAAM  104 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~-----~~-~~~~~~~~~~~~~~  104 (220)
                      .++.....--.+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+++.++.     .. .++..+   +.+..
T Consensus       116 ~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~---l~~~l  192 (283)
T 3jyo_A          116 RGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARG---IEDVI  192 (283)
T ss_dssp             HHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTT---HHHHH
T ss_pred             HHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHH---HHHHH
Confidence            344444322468899999999999999998888999 799999998877776665531     11 222222   33333


Q ss_pred             CCccEEEEcCCCccc----HHHHHhccccCCEEEEe
Q 027664          105 GTMDGIIDTVSAVHP----LMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       105 ~~~d~v~d~~g~~~~----~~~~~~~l~~~G~~v~~  136 (220)
                      ..+|+|++|++....    .......++++..++.+
T Consensus       193 ~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~Dl  228 (283)
T 3jyo_A          193 AAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDV  228 (283)
T ss_dssp             HHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEEC
T ss_pred             hcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEe
Confidence            468999999974210    01123455555555554

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.82  E-value=9.2e-05  Score=53.86  Aligned_cols=98  Identities=22%  Similarity=0.125  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE-EEcCCCHHHHHHhcCCccEEEEcC
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS-FLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~-~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      .++++++||-+|+| .|..+..+++. +.+|+.++.+++..+.+.+.   .+.+. -+...+........+.||+|+...
T Consensus        74 ~~~~~~~vLdiG~G-~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~  151 (210)
T 3lbf_A           74 ELTPQSRVLEIGTG-SGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTA  151 (210)
T ss_dssp             TCCTTCEEEEECCT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             CCCCCCEEEEEcCC-CCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEcc
Confidence            46899999999998 48888888888 78999999998766655443   34321 121222111101124799999876


Q ss_pred             CCcccHHHHHhccccCCEEEEeCC
Q 027664          115 SAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       115 g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      +-....+.+.+.|+++|+++..-.
T Consensus       152 ~~~~~~~~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          152 APPEIPTALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             BCSSCCTHHHHTEEEEEEEEEEEC
T ss_pred             chhhhhHHHHHhcccCcEEEEEEc
Confidence            655556788999999999987643

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.81  E-value=0.00022  Score=53.60  Aligned_cols=75  Identities=19%  Similarity=0.229  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CccchHHHHHHc---CCCE---EEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~-~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++ +.++.+.+.+.+   +...   ..|..+.+.+++..       ++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999997 99999999888888999999998 655444443332   3321   13555554443322       37


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus        86 id~li~~Ag~   95 (261)
T 1gee_A           86 LDVMINNAGL   95 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.81  E-value=0.00014  Score=55.31  Aligned_cols=75  Identities=19%  Similarity=0.272  Sum_probs=55.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-C-EEEcCCCHHHHHHh-------cCCccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-D-SFLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-~-~~~~~~~~~~~~~~-------~~~~d~v~  111 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++++++.+.+.+.+.. . ...|..+.+.++++       .+++|++|
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   87 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   87 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5789999997 9999999998888999999999988776666555532 1 12355555544333       24799999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        88 ~nAg~   92 (270)
T 1yde_A           88 NNAGH   92 (270)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99874

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.81  E-value=8.2e-05  Score=55.18  Aligned_cols=101  Identities=15%  Similarity=0.210  Sum_probs=68.6

Q ss_pred             HHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcC----CCEEE-cCCCHHHHHHhcCC
Q 027664           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLG----ADSFL-VSRDQDEMQAAMGT  106 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g----~~~~~-~~~~~~~~~~~~~~  106 (220)
                      +.... ++||++||=+|+|+ |..+..+|+..|.  +|++++.+++..+.+.+...    ...+. +..+.+......+.
T Consensus        70 l~~l~-ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~  147 (233)
T 4df3_A           70 LIELP-VKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEG  147 (233)
T ss_dssp             CSCCC-CCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCC
T ss_pred             hhhcC-CCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccce
Confidence            33444 79999999999974 8999999999876  89999999887766654432    12222 22222222222347


Q ss_pred             ccEEEEcCCCcc----cHHHHHhccccCCEEEEe
Q 027664          107 MDGIIDTVSAVH----PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       107 ~d~v~d~~g~~~----~~~~~~~~l~~~G~~v~~  136 (220)
                      +|+||-....+.    .+..+.+.|++||+++++
T Consensus       148 vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          148 VDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            899886555432    355667889999999875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.81  E-value=6.6e-05  Score=58.04  Aligned_cols=76  Identities=22%  Similarity=0.274  Sum_probs=56.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+   +..   ...|..+.+.++++       .++
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            36789999997 99999999988889999999999988766655443   322   22455665544433       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus       109 id~lvnnAg~  118 (301)
T 3tjr_A          109 VDVVFSNAGI  118 (301)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999984

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.81  E-value=0.00025  Score=54.50  Aligned_cols=100  Identities=17%  Similarity=0.184  Sum_probs=66.4

Q ss_pred             CCCCEEEEEcc-ch--hHHHHHHHHHHCCCeEEEEeCCccch---HHHHHHcCCCE--EEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GG--LGHVAVKFAKAMGVKVTVISTSPSKK---SEAVERLGADS--FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~--~G~~~~~la~~~g~~vi~~~~~~~~~---~~~~~~~g~~~--~~~~~~~~~~~~~-------~~  105 (220)
                      -.|+++||.|+ |.  +|..+++.+...|++|++++++++..   .++.+..+...  ..|..+.+.++++       .+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46789999996 56  99999998888899999999885322   22333334212  2355665544433       24


Q ss_pred             CccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          106 TMDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ++|++++++|...                             ..+.++..++++|+++.++...
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~  172 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYG  172 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGG
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehh
Confidence            7999999998531                             0123445666789999887654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.80  E-value=0.00012  Score=54.90  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=55.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+   +..   ...|..+.+.++++       .+++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGI   87 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 99999999988888999999999987766655443   321   12355555444333       2489


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus        88 d~li~~Ag~   96 (253)
T 3qiv_A           88 DYLVNNAAI   96 (253)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999985

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.78  E-value=9.5e-05  Score=56.05  Aligned_cols=75  Identities=16%  Similarity=0.291  Sum_probs=55.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +...   ..|..+.+.++++       .+++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999997 89999999988888999999999987766665444   3322   2355665544433       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        83 D~lVnnAG~   91 (264)
T 3tfo_A           83 DVLVNNAGV   91 (264)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999985

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.77  E-value=0.00015  Score=54.50  Aligned_cols=76  Identities=16%  Similarity=0.221  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc------CCC-EEEcC--CCHHHHHHh-------
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL------GAD-SFLVS--RDQDEMQAA-------  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~------g~~-~~~~~--~~~~~~~~~-------  103 (220)
                      -.++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+      ... ...|.  .+.+.++++       
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            46789999997 89999999988888999999999987766554433      222 22344  444433332       


Q ss_pred             cCCccEEEEcCCC
Q 027664          104 MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ~~~~d~v~d~~g~  116 (220)
                      .+++|++++++|.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2479999999985

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.77  E-value=0.00016  Score=54.96  Aligned_cols=75  Identities=16%  Similarity=0.322  Sum_probs=54.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC----C-EEEcCCCHHHHHHhc-------CCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----D-SFLVSRDQDEMQAAM-------GTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~----~-~~~~~~~~~~~~~~~-------~~~d  108 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++.    . ...|..+.+.++++.       +++|
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   94 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   94 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999997 9999999988888899999999987665555555432    1 123555555444332       4799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|+++|.
T Consensus        95 ~li~~Ag~  102 (278)
T 2bgk_A           95 IMFGNVGV  102 (278)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999874

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.77  E-value=0.00016  Score=53.24  Aligned_cols=99  Identities=23%  Similarity=0.227  Sum_probs=68.0

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCC------CeEEEEeCCccchHHHHHH---cC-----C-CEEEcCCCH-HHHH-
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG------VKVTVISTSPSKKSEAVER---LG-----A-DSFLVSRDQ-DEMQ-  101 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g------~~vi~~~~~~~~~~~~~~~---~g-----~-~~~~~~~~~-~~~~-  101 (220)
                      .++++++||.+|+|. |..+..+++..+      .+|+.++.+++..+.+.+.   .+     . ...+...+. +... 
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  155 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEE  155 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccc
Confidence            468899999999986 888889998876      5999999998766555433   22     1 111211221 1110 


Q ss_pred             --HhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCC
Q 027664          102 --AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       102 --~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                        ...+.||+|+........+..+.+.|+++|+++..-.
T Consensus       156 ~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          156 EKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEE
T ss_pred             cCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEc
Confidence              1124799998777666677899999999999987643

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.77  E-value=0.00014  Score=55.63  Aligned_cols=76  Identities=18%  Similarity=0.293  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC---CCE---EEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---ADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g---~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+.   ...   ..|..+.+.++++       .++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35789999997 999999999888889999999999887766655542   221   2355565444332       248


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       106 iD~lVnnAg~  115 (283)
T 3v8b_A          106 LDIVVANAGI  115 (283)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.76  E-value=0.00016  Score=54.38  Aligned_cols=74  Identities=19%  Similarity=0.268  Sum_probs=53.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHhc-------CCcc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~-------~~~d  108 (220)
                      ++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +...   ..|..+.+.++++.       +++|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            578999997 99999999988888999999999877655544433   3221   23555655444332       3799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|+++|.
T Consensus        82 ~lv~nAg~   89 (256)
T 1geg_A           82 VIVNNAGV   89 (256)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999974

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.76  E-value=0.00014  Score=55.96  Aligned_cols=75  Identities=24%  Similarity=0.300  Sum_probs=56.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC----C---EEEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----D---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~----~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.++..+.+..    .   ...|..+.+.++++       .++
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  119 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGA  119 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 9999999998888999999999998887776655531    1   12355565444332       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       120 iD~lvnnAg~  129 (293)
T 3rih_A          120 LDVVCANAGI  129 (293)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.76  E-value=0.00014  Score=59.75  Aligned_cols=91  Identities=18%  Similarity=0.219  Sum_probs=70.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      -.|++|.|+|.|.+|..+++.++.+|++|++++++..+..+. ...|... .      .+.+.....|+|+-+++....+
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a-~~~G~~~-~------~l~ell~~aDiVi~~~~t~~lI  346 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQA-AMEGYRV-V------TMEYAADKADIFVTATGNYHVI  346 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHH-HTTTCEE-C------CHHHHTTTCSEEEECSSSSCSB
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHH-HHcCCEe-C------CHHHHHhcCCEEEECCCccccc
Confidence            578999999999999999999999999999999987643233 2345532 1      2455566899999998765444


Q ss_pred             -HHHHhccccCCEEEEeCCC
Q 027664          121 -MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       121 -~~~~~~l~~~G~~v~~g~~  139 (220)
                       ...+..|+++..++.++..
T Consensus       347 ~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          347 NHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             CHHHHHHCCTTEEEEECSSS
T ss_pred             CHHHHhhCCCCcEEEEcCCC
Confidence             4677899999999988764

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.76  E-value=0.00025  Score=53.64  Aligned_cols=75  Identities=13%  Similarity=0.244  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCc---cchHHHHHHcCCCEE--EcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSP---SKKSEAVERLGADSF--LVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~---~~~~~~~~~~g~~~~--~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+   |++|..+++.+...|++|++++++.   +..+++.+..+....  .|..+.+.++++.       ++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4688999985   6999999998888899999999876   222333233332222  3556655444332       37


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        88 iD~lv~~Ag~   97 (265)
T 1qsg_A           88 FDGFVHSIGF   97 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.76  E-value=0.00012  Score=55.46  Aligned_cols=99  Identities=14%  Similarity=0.217  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-ccchHHHHH---HcCCCE---EEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~-~~~~~~~~~---~~g~~~---~~~~~~~~~~~~~-------~~  105 (220)
                      ..++++||.|+ |++|..+++.+...|++|+++..+ .++.+.+.+   ..+...   ..|..+.+.++++       .+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999997 999999998888889999887544 433333332   234322   2355665544433       24


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCC
Q 027664          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       106 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ++|++++++|...                         ..+.++..++++|+++.++..
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~  163 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS  163 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence            8999999998521                         112345566778999988754

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.75  E-value=0.00011  Score=55.87  Aligned_cols=75  Identities=16%  Similarity=0.291  Sum_probs=54.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---C---C--C-EEEcCCCHHHHHHhc-------
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G---A--D-SFLVSRDQDEMQAAM-------  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g---~--~-~~~~~~~~~~~~~~~-------  104 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +   .  . ...|..+.+.++++.       
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   84 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence            4688999997 99999999888888999999999987766655444   2   1  1 123555555444332       


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++|+++|.
T Consensus        85 g~id~lv~~Ag~   96 (278)
T 1spx_A           85 GKLDILVNNAGA   96 (278)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEEEECCCC
Confidence            389999999874

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.75  E-value=0.0001  Score=58.03  Aligned_cols=92  Identities=20%  Similarity=0.251  Sum_probs=59.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCC-------------------HHHHH
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD-------------------QDEMQ  101 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~-------------------~~~~~  101 (220)
                      -.|++|.|.|.|.+|+.+++.++.+|++|++.+.+..+ .++.+.++++.+ +..+                   .+.+.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCHHHHh
Confidence            47899999999999999999999999999977776544 445566665433 1110                   01111


Q ss_pred             HhcCCccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664          102 AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       102 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      .+  +.+++++++..+.....+.+.|+.+|.++.-
T Consensus       251 ~l--k~~iVie~AN~p~t~~eA~~~L~~~gIlv~P  283 (355)
T 1c1d_A          251 TL--DCSVVAGAANNVIADEAASDILHARGILYAP  283 (355)
T ss_dssp             HC--CCSEECCSCTTCBCSHHHHHHHHHTTCEECC
T ss_pred             hC--CCCEEEECCCCCCCCHHHHHHHHhCCEEEEC
Confidence            11  4667777776653333556666666666543

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.75  E-value=0.00022  Score=58.40  Aligned_cols=91  Identities=18%  Similarity=0.225  Sum_probs=70.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      -.|++|.|+|.|.+|..+++.++.+|++|++++++..+..++ ...|+. +.      .+.+.....|+|+-+.+....+
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a-~~~g~~-~~------~l~ell~~aDiVi~~~~t~~lI  326 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA-VMEGFN-VV------TLDEIVDKGDFFITCTGNVDVI  326 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-HTTTCE-EC------CHHHHTTTCSEEEECCSSSSSB
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHH-HHcCCE-ec------CHHHHHhcCCEEEECCChhhhc
Confidence            578999999999999999999999999999999987654333 345553 21      2455566899999998766544


Q ss_pred             -HHHHhccccCCEEEEeCCC
Q 027664          121 -MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       121 -~~~~~~l~~~G~~v~~g~~  139 (220)
                       ...+..|+++..++.+|..
T Consensus       327 ~~~~l~~MK~gailiNvgrg  346 (479)
T 1v8b_A          327 KLEHLLKMKNNAVVGNIGHF  346 (479)
T ss_dssp             CHHHHTTCCTTCEEEECSST
T ss_pred             CHHHHhhcCCCcEEEEeCCC
Confidence             3677889999999998764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.75  E-value=7.1e-05  Score=56.60  Aligned_cols=76  Identities=22%  Similarity=0.270  Sum_probs=55.3

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---C-CC---EEEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G-AD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g-~~---~~~~~~~~~~~~~~-------~~  105 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.++.++..+.+   + ..   ...|..+.+.++++       .+
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            35789999997 99999999988889999999999987766654443   2 11   12355555544433       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus        88 ~id~lvnnAg~   98 (262)
T 3pk0_A           88 GIDVVCANAGV   98 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999984

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.74  E-value=0.00022  Score=53.88  Aligned_cols=75  Identities=13%  Similarity=0.244  Sum_probs=54.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +...   ..|..+.+.++++       .+++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   85 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   85 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999997 99999999988889999999999877665554433   3322   2355565544332       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        86 d~lv~nAg~   94 (262)
T 1zem_A           86 DFLFNNAGY   94 (262)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.74  E-value=0.0001  Score=56.23  Aligned_cols=75  Identities=16%  Similarity=0.217  Sum_probs=54.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--CEE---EcCCCHHHHHHh-------cCCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSF---LVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~~~---~~~~~~~~~~~~-------~~~~d  108 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.++..+.+..  ...   .|..+.+.++++       .+++|
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  107 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLD  107 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            5789999997 9999999998888999999999987766655554421  111   244555444332       24799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|+++|.
T Consensus       108 ~lvnnAg~  115 (276)
T 2b4q_A          108 ILVNNAGT  115 (276)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.74  E-value=0.00016  Score=54.57  Aligned_cols=75  Identities=15%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHHHHc----CCCEE---EcCCCHHHHHHhc-------C
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERL----GADSF---LVSRDQDEMQAAM-------G  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~~~~----g~~~~---~~~~~~~~~~~~~-------~  105 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++ .+.+.+.+    +....   .|..+.+.++++.       +
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4688999997 899999999888889999999988765 55443333    43222   3555554443332       4


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++|+++|.
T Consensus        83 ~iD~lv~~Ag~   93 (260)
T 1x1t_A           83 RIDILVNNAGI   93 (260)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.74  E-value=0.0001  Score=59.38  Aligned_cols=95  Identities=17%  Similarity=0.168  Sum_probs=68.1

Q ss_pred             CEEEEEccchhHHHHHHHHHHCC---CeEEEEeCCccchHHHHHHcC------CCE-EEcCCCHHHHHHhcC--CccEEE
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMG---VKVTVISTSPSKKSEAVERLG------ADS-FLVSRDQDEMQAAMG--TMDGII  111 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g---~~vi~~~~~~~~~~~~~~~~g------~~~-~~~~~~~~~~~~~~~--~~d~v~  111 (220)
                      .+|+|+|+|.+|..+++.+...|   .+|++++++.++.+.+.+.++      ... .+|..+.+.+.++..  ++|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            36899999999999998887777   389999999888777766553      222 245556666666554  599999


Q ss_pred             EcCCCcccHHHHHhccccCCEEEEeCC
Q 027664          112 DTVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       112 d~~g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      +|+|.......+..+++.+-.++.+..
T Consensus        82 n~ag~~~~~~v~~a~l~~g~~vvD~a~  108 (405)
T 4ina_A           82 NIALPYQDLTIMEACLRTGVPYLDTAN  108 (405)
T ss_dssp             ECSCGGGHHHHHHHHHHHTCCEEESSC
T ss_pred             ECCCcccChHHHHHHHHhCCCEEEecC
Confidence            999865434455566777777776543

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.74  E-value=0.00036  Score=53.08  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCcc---chHHHHHHcC-CCE-EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLG-ADS-FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~~---~~~~~~~~~g-~~~-~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+   |++|..+++.+...|++|++++++.+   ..+++.+..+ ... ..|..+.+.++++       .++
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   84 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999985   69999999988888999999998875   2333333334 222 2455665544333       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        85 id~lv~nAg~   94 (275)
T 2pd4_A           85 LDFIVHSVAF   94 (275)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999984

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.73  E-value=0.00074  Score=51.91  Aligned_cols=99  Identities=16%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc--chHHH---HHHcCCCEEE---cCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS--KKSEA---VERLGADSFL---VSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~--~~~~~---~~~~g~~~~~---~~~~~~~~~~~-------~~  105 (220)
                      .|+++||.|+ |++|..+++.+...|++|++++++.+  ..+.+   .+..+....+   |..+.+.++++       .+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  127 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALG  127 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5789999997 99999999988889999999887632  22222   2334443322   44454444332       24


Q ss_pred             CccEEEEcCCCcc--------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          106 TMDGIIDTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~v~d~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ++|++++++|...                          ..+.++..++++|+++.++...
T Consensus       128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~  188 (294)
T 3r3s_A          128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQ  188 (294)
T ss_dssp             CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGG
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChh
Confidence            8999999998521                          0133455677789999987654

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.73  E-value=0.00015  Score=54.88  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=65.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc---chHHHHHHc---CCCE---EEcCCCHHHHHHhc-------
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERL---GADS---FLVSRDQDEMQAAM-------  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~---~~~~~~~~~---g~~~---~~~~~~~~~~~~~~-------  104 (220)
                      .++++||.|+ +++|..+++.+...|++|+++.+...   +.+++.+.+   +...   ..|..+.+.++++.       
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   89 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF   89 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5789999997 89999999988889999999876543   233333332   3321   23555655444332       


Q ss_pred             CCccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCC
Q 027664          105 GTMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       105 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +++|++++++|...                         ..+.++..++++|+++.++..
T Consensus        90 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~  149 (262)
T 3ksu_A           90 GKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATS  149 (262)
T ss_dssp             CSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEech
Confidence            47999999998420                         012344556678999988764

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.73  E-value=0.0002  Score=51.81  Aligned_cols=97  Identities=14%  Similarity=0.149  Sum_probs=65.8

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccchHHHHHH---cCCC--EEEcCCCHHHHHHhcCCccEEEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .++++++||-+|+|. |..+..+++... .+|++++.+++..+.+.+.   .+.+  .++..+-.+.+. ..+.||+|+.
T Consensus        37 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~  114 (204)
T 3e05_A           37 RLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-DLPDPDRVFI  114 (204)
T ss_dssp             TCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-TSCCCSEEEE
T ss_pred             CCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-cCCCCCEEEE
Confidence            368999999999985 888889998863 5999999998876655433   2432  122211111111 1146999997


Q ss_pred             cCCC---cccHHHHHhccccCCEEEEeC
Q 027664          113 TVSA---VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g~---~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      ....   ...+..+.+.|+++|+++...
T Consensus       115 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~  142 (204)
T 3e05_A          115 GGSGGMLEEIIDAVDRRLKSEGVIVLNA  142 (204)
T ss_dssp             SCCTTCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCCCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence            6543   234678889999999999864

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.73  E-value=0.00015  Score=55.10  Aligned_cols=76  Identities=13%  Similarity=0.267  Sum_probs=54.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      -.++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +...   ..|..+.+.++++       .++
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            35789999997 99999999988888999999999877665544333   3321   2355555444332       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus       109 iD~li~~Ag~  118 (272)
T 1yb1_A          109 VSILVNNAGV  118 (272)
T ss_dssp             CSEEEECCCC
T ss_pred             CcEEEECCCc
Confidence            9999999984

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.72  E-value=0.00025  Score=53.97  Aligned_cols=73  Identities=21%  Similarity=0.291  Sum_probs=54.2

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC----C-EEEcCCCHHHHHHhc-------CCccEE
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----D-SFLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~----~-~~~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      +++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+..    . ...|..+.+.++++.       +++|++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  101 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL  101 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            78999997 8999999998888899999999998776666555432    1 123556665554432       368999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus       102 vnnAG~  107 (272)
T 2nwq_A          102 INNAGL  107 (272)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.72  E-value=0.00026  Score=48.85  Aligned_cols=94  Identities=24%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc-cchHHHHHHc--CCCEEE-cCCCHHHHHHh-cCCccEEEEcCCCc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVERL--GADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAV  117 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~-~~~~~~~~~~--g~~~~~-~~~~~~~~~~~-~~~~d~v~d~~g~~  117 (220)
                      ..+++|.|+|.+|...++.+...|.+|+++++++ ++.+.+...+  |...+. |..+++.+++. ..++|+|+-+++.+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            4678999999999999999999999999999974 4433443333  444332 44455666654 46899999999886


Q ss_pred             ccHH---HHHhccccCCEEEEe
Q 027664          118 HPLM---PLIGLLKSQGKLVLL  136 (220)
Q Consensus       118 ~~~~---~~~~~l~~~G~~v~~  136 (220)
                      ..-.   ...+.+.+..+++..
T Consensus        83 ~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           83 ADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHHHHHHHHHHHTSSSCEEEE
T ss_pred             HHHHHHHHHHHHHCCCCEEEEE
Confidence            4211   223333344566553

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.72  E-value=0.00018  Score=54.56  Aligned_cols=87  Identities=26%  Similarity=0.282  Sum_probs=63.9

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc----
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH----  118 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~----  118 (220)
                      +++++|+|+|++|.+++..+...|.+|+++.++.++.+.++ +++.. .....+.       ..+|+||+|++...    
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~~-~~~~~~l-------~~~DiVInaTp~Gm~~~~  188 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGCD-CFMEPPK-------SAFDLIINATSASLHNEL  188 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTCE-EESSCCS-------SCCSEEEECCTTCCCCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCe-EecHHHh-------ccCCEEEEcccCCCCCCC
Confidence            88999999999999999998889999999999998888887 77753 3333221       17999999987531    


Q ss_pred             cH--HHHHhccccCCEEEEeCC
Q 027664          119 PL--MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 ~~--~~~~~~l~~~G~~v~~g~  138 (220)
                      .+  +.+...++++..++.+..
T Consensus       189 ~l~~~~l~~~l~~~~~v~D~vY  210 (269)
T 3phh_A          189 PLNKEVLKGYFKEGKLAYDLAY  210 (269)
T ss_dssp             SSCHHHHHHHHHHCSEEEESCC
T ss_pred             CCChHHHHhhCCCCCEEEEeCC
Confidence            12  112225677777777644

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.72  E-value=0.00017  Score=54.25  Aligned_cols=73  Identities=23%  Similarity=0.364  Sum_probs=53.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE--EcCCCHHHHHHh-------cCCccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF--LVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~-------~~~~d~v~  111 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++ ++..+.++. ..  .|..+.+.++++       .+++|+++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4688999997 999999999888889999999998776 555455432 22  355555444332       24799999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        83 ~~Ag~   87 (256)
T 2d1y_A           83 NNAAI   87 (256)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99984

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.72  E-value=0.00037  Score=52.94  Aligned_cols=97  Identities=16%  Similarity=0.158  Sum_probs=71.0

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ..+||+.......+.+.+.--.|++++|+|.| .+|.-+++++...|++|+++.+....                     
T Consensus       137 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~---------------------  195 (288)
T 1b0a_A          137 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN---------------------  195 (288)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC---------------------
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchh---------------------
Confidence            35677766666777766644589999999987 57999999999999999988654422                     


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +.+....+|+||-++|.+..+.  -+.+++|..++.+|...
T Consensus       196 L~~~~~~ADIVI~Avg~p~lI~--~~~vk~GavVIDVgi~r  234 (288)
T 1b0a_A          196 LRHHVENADLLIVAVGKPGFIP--GDWIKEGAIVIDVGINR  234 (288)
T ss_dssp             HHHHHHHCSEEEECSCCTTCBC--TTTSCTTCEEEECCCEE
T ss_pred             HHHHhccCCEEEECCCCcCcCC--HHHcCCCcEEEEccCCc
Confidence            2233335799999999875332  24478888999988653

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.72  E-value=0.00017  Score=53.75  Aligned_cols=75  Identities=17%  Similarity=0.273  Sum_probs=53.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH----cCCCE---EEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LGADS---FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.    .+...   ..|..+.+.+++..       ++
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDG   85 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            4688999997 9999999998888899999999987665544332    24322   13555555444332       48


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus        86 ~d~vi~~Ag~   95 (248)
T 2pnf_A           86 IDILVNNAGI   95 (248)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.71  E-value=0.00022  Score=54.35  Aligned_cols=76  Identities=20%  Similarity=0.247  Sum_probs=55.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCCE---EEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~~~~-------~~  105 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.++.++..+.+    +...   ..|..+.+.++++       .+
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  104 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFG  104 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999997 89999999988888999999999987655554433    4322   2355665544332       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus       105 ~id~lv~nAg~  115 (277)
T 4fc7_A          105 RIDILINCAAG  115 (277)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcC
Confidence            79999999983

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.71  E-value=0.00021  Score=53.22  Aligned_cols=73  Identities=25%  Similarity=0.180  Sum_probs=54.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+.+|||.|+ |.+|..+++.+...  |.+|+++++++++...+  .-+...+ .|..+.+.+.+...++|++|.++|.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI--GGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc--CCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            4678999997 99999999888877  78999999987544322  1133322 4566677777777789999999874

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.71  E-value=0.00013  Score=55.28  Aligned_cols=76  Identities=13%  Similarity=0.215  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      -.++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+   +...   ..|..+.+.++++       .++
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999997 89999999988888999999999987766655443   3222   2355665544433       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        89 id~lv~nAg~   98 (264)
T 3ucx_A           89 VDVVINNAFR   98 (264)
T ss_dssp             CSEEEECCCS
T ss_pred             CcEEEECCCC
Confidence            9999999865

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.71  E-value=9.8e-05  Score=54.37  Aligned_cols=85  Identities=21%  Similarity=0.172  Sum_probs=61.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhc---CCccEEEEcCCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM---GTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~d~v~d~~g~~  117 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.+              .|..+.+.++++.   +++|++++++|..
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------~D~~~~~~v~~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------LDISDEKSVYHYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------CCTTCHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------cCCCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence            4678999997 99999999988888999999887753              3455555554433   4799999998843


Q ss_pred             c--------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          118 H--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       118 ~--------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .                          ..+.+...++++|+++.++...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~  119 (223)
T 3uce_A           71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGML  119 (223)
T ss_dssp             CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred             CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchh
Confidence            0                          1133455667789999887654

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.71  E-value=0.0002  Score=56.43  Aligned_cols=77  Identities=19%  Similarity=0.184  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHC-CC-eEEEEeCCccchHHHHHHcC---CCE-EEcCCCHHHHHHhcCCccEEEEc
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAM-GV-KVTVISTSPSKKSEAVERLG---ADS-FLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~-g~-~vi~~~~~~~~~~~~~~~~g---~~~-~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      -.+++|||.|+ |.+|..+++.+... |. +|+++++++.+...+.+.+.   ... ..|..+.+.+.+...++|+||.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~   98 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHA   98 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEEC
Confidence            45789999997 99999999877776 98 99999998776655544442   222 23556677777777799999999


Q ss_pred             CCCc
Q 027664          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      ++..
T Consensus        99 Aa~~  102 (344)
T 2gn4_A           99 AALK  102 (344)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9854

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.71  E-value=0.00017  Score=54.11  Aligned_cols=75  Identities=21%  Similarity=0.361  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-ccchHHHHHHc---CCC---EEEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVERL---GAD---SFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~-~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++ .++.+.+.+.+   +..   ...|..+.+.++++.       ++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999997 999999998888889999999998 66655544333   322   113555555444332       37


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus        86 id~vi~~Ag~   95 (258)
T 3afn_B           86 IDVLINNAGG   95 (258)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.70  E-value=0.00017  Score=53.94  Aligned_cols=74  Identities=19%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCC---EEEcCCCHHHHHHhc-------CCc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GAD---SFLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~-------~~~  107 (220)
                      ++++||.|+ |++|..++..+...|++|++++++.++.+.+.+.+    +..   ...|..+.+.++++.       +++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI   81 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            578999997 99999999988888999999999887666554444    221   123555555444332       379


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus        82 d~li~~Ag~   90 (250)
T 2cfc_A           82 DVLVNNAGI   90 (250)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.70  E-value=0.00021  Score=53.72  Aligned_cols=75  Identities=21%  Similarity=0.298  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHhc-------CCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+   +...   ..|..+.+.++++.       +++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV   91 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 99999999988888999999999876654443332   3221   23555555444332       479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus        92 d~vi~~Ag~  100 (260)
T 3awd_A           92 DILVACAGI  100 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.70  E-value=0.00015  Score=55.47  Aligned_cols=101  Identities=17%  Similarity=0.035  Sum_probs=66.0

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCC---CEEEcCCCHHHHHHhcCC
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA---DSFLVSRDQDEMQAAMGT  106 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~  106 (220)
                      ..+|...+.--.+++++|+|+|++|.+++..+...|+ +|+++.++.++.+++++.++.   -.+....      +....
T Consensus       114 ~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~------~l~~~  187 (281)
T 3o8q_A          114 VQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE------QLKQS  187 (281)
T ss_dssp             HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG------GCCSC
T ss_pred             HHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH------HhcCC
Confidence            3445444322368899999999999999988888997 999999998887777766653   1222221      12258


Q ss_pred             ccEEEEcCCCcccHH---HHHhccccCCEEEEeC
Q 027664          107 MDGIIDTVSAVHPLM---PLIGLLKSQGKLVLLG  137 (220)
Q Consensus       107 ~d~v~d~~g~~~~~~---~~~~~l~~~G~~v~~g  137 (220)
                      +|+||+|++....-+   .-...++++..++.+.
T Consensus       188 aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~Dlv  221 (281)
T 3o8q_A          188 YDVIINSTSASLDGELPAIDPVIFSSRSVCYDMM  221 (281)
T ss_dssp             EEEEEECSCCCC----CSCCGGGEEEEEEEEESC
T ss_pred             CCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEec
Confidence            999999997642111   0123455655555554

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.70  E-value=0.00015  Score=55.36  Aligned_cols=76  Identities=24%  Similarity=0.316  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+   +...   ..|..+.+.++++       .++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999997 99999999888888999999999987766655443   3322   2355565544332       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       102 id~lv~nAg~  111 (279)
T 3sju_A          102 IGILVNSAGR  111 (279)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999985

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.70  E-value=0.00023  Score=52.62  Aligned_cols=75  Identities=16%  Similarity=0.270  Sum_probs=54.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-CCE-EEcCCCHHHHHHh-------cCCccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADS-FLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~-------~~~~d~v~  111 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++ ... ..|..+.+.+++.       .+++|+++
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3578999997 999999999888899999999998877666655553 222 2355555444332       24799999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        84 ~~Ag~   88 (234)
T 2ehd_A           84 NNAGV   88 (234)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99884

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.69  E-value=8.7e-05  Score=56.75  Aligned_cols=75  Identities=23%  Similarity=0.307  Sum_probs=55.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCEE---EcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADSF---LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~-------~~~~  107 (220)
                      .|+++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+   +....   .|..+.+.++++       .+++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGL   86 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 99999999988888999999999988777666554   22222   244555444332       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        87 D~lvnnAg~   95 (280)
T 3tox_A           87 DTAFNNAGA   95 (280)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.69  E-value=8.4e-05  Score=55.81  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-----C-C--C-EEEcCCCHHHHHHh-------
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----G-A--D-SFLVSRDQDEMQAA-------  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-----g-~--~-~~~~~~~~~~~~~~-------  103 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+     + .  . ...|..+.+.++++       
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            35789999997 99999999888888999999999987766654433     2 1  1 12355665444332       


Q ss_pred             cCCccEEEEcCCC
Q 027664          104 MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ~~~~d~v~d~~g~  116 (220)
                      .+++|++++++|.
T Consensus        85 ~g~iD~lvnnAg~   97 (250)
T 3nyw_A           85 YGAVDILVNAAAM   97 (250)
T ss_dssp             HCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2479999999985

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.69  E-value=0.00018  Score=54.18  Aligned_cols=75  Identities=16%  Similarity=0.189  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+   +...   ..|..+.+.++++       .+++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   92 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGV   92 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 99999999988888999999999877655443332   3321   2355555444332       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus        93 D~lv~~Ag~  101 (260)
T 2zat_A           93 DILVSNAAV  101 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=97.69  E-value=0.00026  Score=53.56  Aligned_cols=97  Identities=24%  Similarity=0.373  Sum_probs=70.1

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEccc-hhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHHcCCCEEEcCCCH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERLGADSFLVSRDQ   97 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~   97 (220)
                      ..+||+...+...+.+.+.--.|++++|+|.| .+|..+++++...  |++|+++.+...                    
T Consensus       136 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~--------------------  195 (281)
T 2c2x_A          136 APLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTR--------------------  195 (281)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCS--------------------
T ss_pred             CCCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchh--------------------
Confidence            35677666666667666533578999999997 4699999999998  889988754432                    


Q ss_pred             HHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664           98 DEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        98 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                       .+.+....+|++|-++|.+..+  --+.++++..++.+|...
T Consensus       196 -~L~~~~~~ADIVI~Avg~p~~I--~~~~vk~GavVIDVgi~r  235 (281)
T 2c2x_A          196 -DLPALTRQADIVVAAVGVAHLL--TADMVRPGAAVIDVGVSR  235 (281)
T ss_dssp             -CHHHHHTTCSEEEECSCCTTCB--CGGGSCTTCEEEECCEEE
T ss_pred             -HHHHHHhhCCEEEECCCCCccc--CHHHcCCCcEEEEccCCC
Confidence             2334445789999999988533  234578888888887653

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.69  E-value=8.7e-05  Score=55.93  Aligned_cols=76  Identities=14%  Similarity=0.219  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +...   ..|..+.+.++++       .++
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999997 99999999888888999999999987666554433   3322   2355555444332       248


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        90 id~lv~nAg~   99 (256)
T 3gaf_A           90 ITVLVNNAGG   99 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999885

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.69  E-value=0.00013  Score=56.80  Aligned_cols=75  Identities=20%  Similarity=0.280  Sum_probs=55.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC--C---EEEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA--D---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~--~---~~~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +.  .   ...|..+.+.++++       .+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            5789999997 99999999988888999999999988766654443   21  1   22355665544333       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++|+++|.
T Consensus        87 ~id~lv~nAg~   97 (319)
T 3ioy_A           87 PVSILCNNAGV   97 (319)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999984

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.69  E-value=0.00012  Score=55.59  Aligned_cols=76  Identities=16%  Similarity=0.188  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC---CEEEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA---DSFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~---~~~~~~~~~~~~~~~-------~~~  106 (220)
                      -.++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+   +.   ....|..+.+.++++       .++
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            35789999997 99999999988888999999999987665554332   32   122456665544433       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       106 iD~lvnnAg~  115 (270)
T 3ftp_A          106 LNVLVNNAGI  115 (270)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.69  E-value=0.00012  Score=54.31  Aligned_cols=98  Identities=14%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCH-HHHHHh--cCCccEE
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQ-DEMQAA--MGTMDGI  110 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~-~~~~~~--~~~~d~v  110 (220)
                      ..++++||.+|+| .|..+..+++.. +.+|+.++.+++..+.+.+.   .|..  ..+...+. +.+...  .+.||+|
T Consensus        52 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  130 (233)
T 2gpy_A           52 MAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL  130 (233)
T ss_dssp             HHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred             ccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence            4678899999998 688888999887 56999999998776655443   2431  22222332 223344  3579999


Q ss_pred             EEcCCC---cccHHHHHhccccCCEEEEeCC
Q 027664          111 IDTVSA---VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       111 ~d~~g~---~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      +...+.   ...+..+.+.|+++|+++....
T Consensus       131 ~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          131 FIDAAKGQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             EEEGGGSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             EECCCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            865543   2346788899999999988643

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.68  E-value=0.00015  Score=54.83  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=54.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCC-E---EEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GAD-S---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~-~---~~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ +++|..+++.+...|++|++++++.++.+...+.+    +.. .   ..|..+.+.++++       .+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG   86 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            5789999997 89999999988888999999999987766554432    221 1   1355565544333       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus        87 ~id~lvnnAg~   97 (265)
T 3lf2_A           87 CASILVNNAGQ   97 (265)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.68  E-value=9.3e-05  Score=55.74  Aligned_cols=94  Identities=24%  Similarity=0.312  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC-EEEcCCCHHHHHHh-cCCccEEEEcC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD-SFLVSRDQDEMQAA-MGTMDGIIDTV  114 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~-~~~~d~v~d~~  114 (220)
                      ++++++||-+|+|. |..++.+++ .|++|++++.++...+.+.+.   .+.+ .++ ..+..  ..+ .+.||+|+-..
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~-~~d~~--~~~~~~~fD~Vv~n~  192 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFL-EGSLE--AALPFGPFDLLVANL  192 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEE-ESCHH--HHGGGCCEEEEEEEC
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCcEEEE-ECChh--hcCcCCCCCEEEECC
Confidence            57899999999976 777777766 477999999998876665443   2432 222 12211  113 24799998543


Q ss_pred             CCc---ccHHHHHhccccCCEEEEeCC
Q 027664          115 SAV---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       115 g~~---~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ...   ..+..+.+.|+++|+++..+.
T Consensus       193 ~~~~~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          193 YAELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHHcCCCCEEEEEee
Confidence            221   245677889999999998754

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.68  E-value=0.0014  Score=51.48  Aligned_cols=130  Identities=16%  Similarity=0.198  Sum_probs=81.5

Q ss_pred             CEEEEEccchhHHHHHHHHH-H-CCCeEEEE-eCCccchHHHHHHcCCCEEEcCCCHHHHHHhcC--CccEEEEcCCCcc
Q 027664           44 MHVGVVGLGGLGHVAVKFAK-A-MGVKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~-~-~g~~vi~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~d~v~d~~g~~~  118 (220)
                      -+|.|+|+|.+|...++.++ . .+++++.+ ++++++.+.+.+.+|...+++  +   .+++..  .+|+|+.|++...
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~--~---~~~~l~~~~~D~V~i~tp~~~   83 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT--N---YKDMIDTENIDAIFIVAPTPF   83 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES--C---HHHHHTTSCCSEEEECSCGGG
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC--C---HHHHhcCCCCCEEEEeCChHh
Confidence            47899999999998888776 4 46776654 556666666667778755542  3   233332  7999999999876


Q ss_pred             cHHHHHhccccCCEEEEeCCCCCCCCCCchh---h----hcC-CeEEE-EEecCCHHHHHHHHHHHHcCCCcc
Q 027664          119 PLMPLIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTG-RKIVG-GSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       119 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~-~~~~~-~~~~~~~~~~~~~~~~i~~g~i~~  182 (220)
                      ..+.+..+++.|-.+ ++.   .+...+...   +    -.+ +..+. +........++.+.+++.+|.+-.
T Consensus        84 h~~~~~~al~~G~~v-~~e---Kp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~~g~iG~  152 (346)
T 3cea_A           84 HPEMTIYAMNAGLNV-FCE---KPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDNGDIGK  152 (346)
T ss_dssp             HHHHHHHHHHTTCEE-EEC---SCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHCCCEE-EEc---CCCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHHcCCCCC
Confidence            777788888776444 442   233333221   1    123 33333 233233345777888888887753

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.68  E-value=0.00025  Score=53.26  Aligned_cols=75  Identities=20%  Similarity=0.293  Sum_probs=55.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.++....   .|..+.+.++++       .+++|++
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   84 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4688999997 9999999998888899999999988777666666553222   345555444332       2468999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        85 v~~Ag~   90 (253)
T 1hxh_A           85 VNNAGI   90 (253)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999985

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.68  E-value=0.00022  Score=55.31  Aligned_cols=88  Identities=19%  Similarity=0.379  Sum_probs=66.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..+++.++.+|.+|++.+++.++ .. ...+|++..    +   +.+.....|+|+-+++...   
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~-~~~~g~~~~----~---l~ell~~aDvV~l~~p~~~~t~  211 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ER-AKEVNGKFV----D---LETLLKESDVVTIHVPLVESTY  211 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HH-HHHTTCEEC----C---HHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hh-HhhcCcccc----C---HHHHHhhCCEEEEecCCChHHh
Confidence            5789999999999999999999999999999988765 33 356776421    2   2233346899999987532   


Q ss_pred             -cH-HHHHhccccCCEEEEeCC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g~  138 (220)
                       .+ ...+..+++++.++.++.
T Consensus       212 ~li~~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          212 HLINEERLKLMKKTAILINTSR  233 (307)
T ss_dssp             TCBCHHHHHHSCTTCEEEECSC
T ss_pred             hhcCHHHHhcCCCCeEEEECCC
Confidence             12 356788999999998865

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.68  E-value=0.00011  Score=56.09  Aligned_cols=75  Identities=19%  Similarity=0.321  Sum_probs=54.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC---C---EEEcCCCHHHHHHh-------c
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA---D---SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~---~---~~~~~~~~~~~~~~-------~  104 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.++..+.+   +.   .   ...|..+.+.++++       .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4688999997 99999999988888999999999987666554433   22   1   12355565544332       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++|+++|.
T Consensus        85 g~iD~lv~nAg~   96 (280)
T 1xkq_A           85 GKIDVLVNNAGA   96 (280)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.68  E-value=0.00015  Score=55.33  Aligned_cols=75  Identities=25%  Similarity=0.337  Sum_probs=54.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC---CE---EEcCCCHHHHHHh-------c
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA---DS---FLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~---~~---~~~~~~~~~~~~~-------~  104 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+   +.   ..   ..|..+.+.++++       .
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            5789999997 99999999988888999999999987766554443   22   11   1355555444332       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++++++|.
T Consensus        90 g~id~lv~nAg~  101 (281)
T 3svt_A           90 GRLHGVVHCAGG  101 (281)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999985

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.68  E-value=0.00011  Score=55.56  Aligned_cols=76  Identities=17%  Similarity=0.272  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +..   ...|..+.+.++++       .+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            35789999997 99999999888888999999999987766554443   322   12355565544332       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       107 id~lv~~Ag~  116 (262)
T 3rkr_A          107 CDVLVNNAGV  116 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999985

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.68  E-value=0.00011  Score=56.69  Aligned_cols=75  Identities=19%  Similarity=0.340  Sum_probs=54.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC---C---EEEcCCCHHHHHHh-------c
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA---D---SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~---~---~~~~~~~~~~~~~~-------~  104 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+   +.   .   ...|..+.+.++++       .
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            5788999997 99999999988888999999999987665554333   22   1   12355555544332       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++|+++|.
T Consensus       105 g~iD~lvnnAG~  116 (297)
T 1xhl_A          105 GKIDILVNNAGA  116 (297)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999884

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.68  E-value=0.00016  Score=53.27  Aligned_cols=117  Identities=15%  Similarity=0.044  Sum_probs=71.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc-chHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      -.|.+|||+|+|.+|...++.+...|++|++++.... ....+.+..+...+-..-.+    ....++|+||-|++.+. 
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~----~dL~~adLVIaAT~d~~-  103 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGE----EDLLNVFFIVVATNDQA-  103 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCG----GGSSSCSEEEECCCCTH-
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCH----hHhCCCCEEEECCCCHH-
Confidence            3678899999999999999999999999999987653 23334333234332111111    12358999999999875 


Q ss_pred             HHHHHhccccCCEEEEeCCCCCCCCCCchhhhc-CCeEEEEEec
Q 027664          120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT-GRKIVGGSLI  162 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~  162 (220)
                      ....+...++.|..|.........+|..+.++. ..+.+.-+..
T Consensus       104 ~N~~I~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~  147 (223)
T 3dfz_A          104 VNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTD  147 (223)
T ss_dssp             HHHHHHHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECT
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECC
Confidence            544444444488888776554444554444433 3555554443

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.67  E-value=7.5e-05  Score=55.47  Aligned_cols=97  Identities=29%  Similarity=0.295  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCEE-EcCCCHHHHHHhc--CCccEEEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSF-LVSRDQDEMQAAM--GTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~~~~~--~~~d~v~d  112 (220)
                      .+.++++||.+|+| .|..+..+++..+.+|++++.+++..+.+.+.   .|.+.+ +...+..  ..+.  ..||+|+.
T Consensus        88 ~~~~~~~vLdiG~G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~--~~~~~~~~fD~Ii~  164 (235)
T 1jg1_A           88 NLKPGMNILEVGTG-SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS--KGFPPKAPYDVIIV  164 (235)
T ss_dssp             TCCTTCCEEEECCT-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG--GCCGGGCCEEEEEE
T ss_pred             CCCCCCEEEEEeCC-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc--cCCCCCCCccEEEE
Confidence            46889999999998 68889999988768999999998766555443   343221 2122211  1111  25999998


Q ss_pred             cCCCcccHHHHHhccccCCEEEEeCC
Q 027664          113 TVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      +.+-....+.+.+.|+++|+++..-.
T Consensus       165 ~~~~~~~~~~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          165 TAGAPKIPEPLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             CSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             CCcHHHHHHHHHHhcCCCcEEEEEEe
Confidence            77655566788999999999987643

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.67  E-value=4.8e-05  Score=56.60  Aligned_cols=98  Identities=19%  Similarity=0.163  Sum_probs=64.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      .+.++||.|+ |.+|..+++.+...|.  +|+++++++++..... .-+...+ .|..+.+.+.+...++|++|+++|..
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc-cCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            4678999997 9999999988888899  9999998876543221 1123222 34444555666666899999999864


Q ss_pred             cc--------------HHHHHhcccc--CCEEEEeCCCC
Q 027664          118 HP--------------LMPLIGLLKS--QGKLVLLGAPE  140 (220)
Q Consensus       118 ~~--------------~~~~~~~l~~--~G~~v~~g~~~  140 (220)
                      ..              ...+++.+.+  .++++.++...
T Consensus        96 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~  134 (242)
T 2bka_A           96 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG  134 (242)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             cccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCc
Confidence            11              1223334433  36888887654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.67  E-value=8.8e-05  Score=54.65  Aligned_cols=98  Identities=27%  Similarity=0.234  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHHHc---C-----C-CEEEcCCCHHHHHHhcCCcc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERL---G-----A-DSFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~~---g-----~-~~~~~~~~~~~~~~~~~~~d  108 (220)
                      ++++++||-+|+|. |..+..+++..|  .+|+.++.++...+.+.+.+   +     . ...+...+........+.||
T Consensus        75 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  153 (226)
T 1i1n_A           75 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD  153 (226)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred             CCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence            67899999999985 888888888765  59999999987665553322   2     1 11111122111101123799


Q ss_pred             EEEEcCCCcccHHHHHhccccCCEEEEeCC
Q 027664          109 GIIDTVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       109 ~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      +|+........+..+.+.|+++|+++..-.
T Consensus       154 ~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          154 AIHVGAAAPVVPQALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEEECSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             EEEECCchHHHHHHHHHhcCCCcEEEEEEe
Confidence            998766655567899999999999987643

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.67  E-value=0.00017  Score=53.95  Aligned_cols=75  Identities=17%  Similarity=0.294  Sum_probs=53.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHhc-------CCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +...   ..|..+.+.+++..       +++
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   89 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            5688999997 99999999988888999999999877655443332   3221   13555555444332       389


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus        90 d~vi~~Ag~   98 (255)
T 1fmc_A           90 DILVNNAGG   98 (255)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.67  E-value=0.00015  Score=53.54  Aligned_cols=73  Identities=18%  Similarity=0.197  Sum_probs=55.3

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--C-EEEcCCCHHHHHHhc----CCccEEEEcCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--D-SFLVSRDQDEMQAAM----GTMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~-~~~~~~~~~~~~~~~----~~~d~v~d~~g  115 (220)
                      +++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++.  . ...|..+.+.++++.    +.+|++++++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag   81 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAG   81 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCC
Confidence            35899997 9999999998888999999999998888777666643  2 224566666665543    24699999998


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        82 ~   82 (230)
T 3guy_A           82 S   82 (230)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.66  E-value=0.00031  Score=53.72  Aligned_cols=75  Identities=17%  Similarity=0.228  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHhc-------CCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|+++.++.++.+.+.+.+   +...   ..|..+.+.++++.       +++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i  122 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV  122 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4688999997 99999999988888999999888776655544333   4322   23555655444332       479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus       123 d~li~~Ag~  131 (285)
T 2c07_A          123 DILVNNAGI  131 (285)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.66  E-value=0.00076  Score=51.11  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-chHHHHH---HcCCCE---EEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVE---RLGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~~~---~~g~~~---~~~~~~~~~~~~~-------~~  105 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.. +.+.+.+   ..+...   ..|..+.+.++++       .+
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   95 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG   95 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35789999997 89999999988889999998776543 3333322   334322   2355555444333       24


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ++|++++++|...                         ..+.++..++++|+++.++...
T Consensus        96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            7999999988521                         1134556677789999987754

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.66  E-value=0.00023  Score=53.40  Aligned_cols=94  Identities=20%  Similarity=0.231  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHh----c---CCccEEEE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA----M---GTMDGIID  112 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~---~~~d~v~d  112 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++++.++...      ....++..+.+.++++    .   +++|++++
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~------~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~   93 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD------HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVC   93 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS------EEEECSCSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------cceEEEeCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            45789999997 999999999888899999999998764321      1223445555444332    2   37999999


Q ss_pred             cCCCc-------c-------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          113 TVSAV-------H-------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       113 ~~g~~-------~-------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ++|..       .                   ..+.+...++++|+++.++...
T Consensus        94 ~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A           94 AAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             CCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence            99841       0                   0123445666778999887644

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.66  E-value=8.6e-05  Score=56.29  Aligned_cols=75  Identities=17%  Similarity=0.216  Sum_probs=54.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-----CCC---EEEcCCCHHHHHHhc---CCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GAD---SFLVSRDQDEMQAAM---GTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-----g~~---~~~~~~~~~~~~~~~---~~~d~  109 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.++..+.+     +..   ...|..+.+.++++.   +++|+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   88 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI   88 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence            5789999997 99999999988889999999999987665554433     221   123555555554443   47999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus        89 lv~nAg~   95 (267)
T 3t4x_A           89 LINNLGI   95 (267)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999985

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.66  E-value=5.3e-05  Score=57.52  Aligned_cols=74  Identities=14%  Similarity=0.166  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC-EEEcCCCHHHHHHh-------cCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.... .... ...|..+.+.++++       .+++|++++
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn   93 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNL-PNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVN   93 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTCC-TTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhhc-CCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            4689999997 999999999888899999999998765433211 1111 22355565444333       247999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        94 nAg~   97 (266)
T 3p19_A           94 NAGM   97 (266)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9985

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.66  E-value=0.00038  Score=55.11  Aligned_cols=122  Identities=17%  Similarity=0.161  Sum_probs=77.4

Q ss_pred             hhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC----ccc----hHHHHHHcCCCEEEcCCC
Q 027664           26 AGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS----PSK----KSEAVERLGADSFLVSRD   96 (220)
Q Consensus        26 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~----~~~----~~~~~~~~g~~~~~~~~~   96 (220)
                      .....+.+++..+.--++.+|+|+|+|..|..+++++...|+ +|++++++    .++    +..+.+.+.-+.- ....
T Consensus       175 ~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~-~~~~  253 (388)
T 1vl6_A          175 VSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITN-PERL  253 (388)
T ss_dssp             HHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC-TTCC
T ss_pred             HHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhh-ccCc
Confidence            333344555555532467899999999999999999999999 89999988    544    2222222221100 0112


Q ss_pred             HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhh
Q 027664           97 QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL  150 (220)
Q Consensus        97 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  150 (220)
                      ...+.+...++|++|-+++..-.-++.++.|+++..++.+..+.  .+..+...
T Consensus       254 ~~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSNPt--~E~~p~~a  305 (388)
T 1vl6_A          254 SGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPV--PEIDPELA  305 (388)
T ss_dssp             CSCHHHHHTTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSS--CSSCHHHH
T ss_pred             hhhHHHHHccCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCCCC--CCCCHHHH
Confidence            23455666689999999884323467778888877776665544  34444443

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.66  E-value=0.00029  Score=53.05  Aligned_cols=74  Identities=18%  Similarity=0.263  Sum_probs=52.3

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc--hHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCC
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK--KSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~--~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      ++++||.|+ |++|..+++.+...|++|++++++.++  .++..+.+   +...   ..|..+.+.++++       .++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            578999997 999999998887789999999988765  44443333   3221   2355565544333       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus        82 iD~lv~nAg~   91 (258)
T 3a28_C           82 FDVLVNNAGI   91 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.66  E-value=0.00018  Score=54.73  Aligned_cols=76  Identities=21%  Similarity=0.301  Sum_probs=55.3

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCEE---EcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~-------~~~  106 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.++.++..+++   +....   .|..+.+.++++       .++
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            35789999997 99999999988889999999999887766654443   43322   244555444333       237


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       104 iD~lv~nAg~  113 (271)
T 4ibo_A          104 VDILVNNAGI  113 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.66  E-value=7.3e-05  Score=56.67  Aligned_cols=76  Identities=17%  Similarity=0.265  Sum_probs=54.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH----cCCCE---EEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~~~~-------~~  105 (220)
                      -.++++||.|+ |++|..+++.+...|++|++++++.++.++..+.    .+...   ..|..+.+.++++       .+
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            35789999997 9999999998888999999999998776655443    34322   2355554433322       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus        98 ~id~lv~nAg~  108 (266)
T 4egf_A           98 GLDVLVNNAGI  108 (266)
T ss_dssp             SCSEEEEECCC
T ss_pred             CCCEEEECCCc
Confidence            89999999885

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.65  E-value=0.00023  Score=53.70  Aligned_cols=75  Identities=21%  Similarity=0.290  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHhc--------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM--------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~--------~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+   +...   ..|..+.+.++++.        ++
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   92 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   92 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5688999997 99999999988888999999999877655543332   3321   23455554443332        57


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus        93 id~li~~Ag~  102 (266)
T 1xq1_A           93 LDILINNLGA  102 (266)
T ss_dssp             CSEEEEECCC
T ss_pred             CcEEEECCCC
Confidence            9999999884

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.65  E-value=0.00066  Score=51.30  Aligned_cols=69  Identities=19%  Similarity=0.213  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHhc-------CCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAM-------GTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-------~~~d~v~d  112 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++      .-.+.. ..|..+.+.++++.       +++|++|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG------EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999997 999999999888889999999988654      112221 23555655444332       37999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        81 ~Ag~   84 (264)
T 2dtx_A           81 NAGI   84 (264)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.64  E-value=0.00048  Score=51.19  Aligned_cols=74  Identities=23%  Similarity=0.287  Sum_probs=50.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCccchHHHHHH---cCCCE---EEcCCCHHHHHHhc-------CCc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVER---LGADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~-~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~~-------~~~  107 (220)
                      |+++||.|+ |++|..+++.+...|++|+++ .++.++.+.+.+.   .+...   ..|..+.+.++++.       +++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            468999997 999999999888899999985 6766554444332   23221   13555555444332       379


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus        81 d~li~~Ag~   89 (244)
T 1edo_A           81 DVVVNNAGI   89 (244)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.64  E-value=0.00018  Score=54.91  Aligned_cols=73  Identities=25%  Similarity=0.320  Sum_probs=55.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHhc------CCccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAAM------GTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~------~~~d~v~  111 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.++....   .|..+.+.++++.      +++|+++
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~lv  108 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAV  108 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence            5788999997 9999999988888899999999998888777777764322   3555555443322      2689999


Q ss_pred             EcC
Q 027664          112 DTV  114 (220)
Q Consensus       112 d~~  114 (220)
                      .+.
T Consensus       109 ~~a  111 (281)
T 3ppi_A          109 VAH  111 (281)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            883

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.64  E-value=0.00018  Score=53.96  Aligned_cols=73  Identities=21%  Similarity=0.299  Sum_probs=54.5

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHhc-------CCccEEEE
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAAM-------GTMDGIID  112 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~-------~~~d~v~d  112 (220)
                      +++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.++...   ..|..+.+.++++.       +++|++++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            36889997 999999999888889999999999877776666655321   23556665555432       27999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        81 nAg~   84 (248)
T 3asu_A           81 NAGL   84 (248)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9874

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.64  E-value=0.00021  Score=54.36  Aligned_cols=75  Identities=19%  Similarity=0.143  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CccchHHHHHHc----CCCE---EEcCCCH----HHHHHhc----
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERL----GADS---FLVSRDQ----DEMQAAM----  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~-~~~~~~~~~~~~----g~~~---~~~~~~~----~~~~~~~----  104 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++ +.++.+.+.+.+    +...   ..|..+.    +.++++.    
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            4688999997 99999999988888999999999 766555554433    4321   1344554    4443332    


Q ss_pred             ---CCccEEEEcCCC
Q 027664          105 ---GTMDGIIDTVSA  116 (220)
Q Consensus       105 ---~~~d~v~d~~g~  116 (220)
                         +++|++|+++|.
T Consensus        90 ~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           90 RAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCC
Confidence               479999999984

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.63  E-value=0.00018  Score=54.50  Aligned_cols=88  Identities=20%  Similarity=0.247  Sum_probs=63.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL-  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~-  120 (220)
                      .| +++|+|+|.+|..++..+...|++|++..++.++.+.+.+.++..  +  .+   +.+. ..+|+|+.|++..... 
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~--~--~~---~~~~-~~~Divi~~tp~~~~~~  186 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR--A--VP---LEKA-REARLLVNATRVGLEDP  186 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE--E--CC---GGGG-GGCSEEEECSSTTTTCT
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc--h--hh---Hhhc-cCCCEEEEccCCCCCCC
Confidence            56 899999999999999988888999999998887777777777764  2  12   2233 5789999999876211 


Q ss_pred             --HH-HHhccccCCEEEEeCC
Q 027664          121 --MP-LIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 --~~-~~~~l~~~G~~v~~g~  138 (220)
                        .. ....++++..++.++.
T Consensus       187 ~~~~l~~~~l~~g~~viD~~~  207 (263)
T 2d5c_A          187 SASPLPAELFPEEGAAVDLVY  207 (263)
T ss_dssp             TCCSSCGGGSCSSSEEEESCC
T ss_pred             CCCCCCHHHcCCCCEEEEeec
Confidence              11 1456677777777654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.63  E-value=0.00014  Score=54.33  Aligned_cols=75  Identities=17%  Similarity=0.186  Sum_probs=54.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|+.++++.++.+.+.+.+   +...   ..|..+.+.++++       .+++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999997 99999999888888999999999987666554433   4322   2355565544433       2379


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        84 d~li~~Ag~   92 (247)
T 3lyl_A           84 DILVNNAGI   92 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999985

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.63  E-value=0.00011  Score=57.36  Aligned_cols=76  Identities=21%  Similarity=0.140  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----C--CCEE--EcCCCHHHHHHhcCCccEEE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----G--ADSF--LVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g--~~~~--~~~~~~~~~~~~~~~~d~v~  111 (220)
                      .++.+|||.|+ |.+|..+++.+...|.+|++++++.++...+.+.+    +  ...+  .|..+.+.+.++..++|+||
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   88 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence            56789999997 99999999888888999999999876544443221    2  2222  24444555555556899999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      .+++.
T Consensus        89 h~A~~   93 (342)
T 1y1p_A           89 HIASV   93 (342)
T ss_dssp             ECCCC
T ss_pred             EeCCC
Confidence            99975

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.62  E-value=0.00013  Score=53.78  Aligned_cols=98  Identities=20%  Similarity=0.237  Sum_probs=66.0

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCC-------CeEEEEeCCccchHHHHHHc---C-----C-CEEEcCCCHHHHHH
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG-------VKVTVISTSPSKKSEAVERL---G-----A-DSFLVSRDQDEMQA  102 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g-------~~vi~~~~~~~~~~~~~~~~---g-----~-~~~~~~~~~~~~~~  102 (220)
                      .++++++||.+|+|. |..+..+++..+       .+|+.++.+++..+.+.+.+   +     . ...+...+......
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  159 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP  159 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCC
Confidence            368899999999986 888888888766       49999999987665553322   1     1 11111122111000


Q ss_pred             hcCCccEEEEcCCCcccHHHHHhccccCCEEEEeC
Q 027664          103 AMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       103 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      ..+.||+|+....-......+.+.|+++|+++..-
T Consensus       160 ~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          160 PNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV  194 (227)
T ss_dssp             GGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             cCCCccEEEECCchHHHHHHHHHHhcCCCEEEEEE
Confidence            12479999987776666789999999999998754

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.62  E-value=0.00031  Score=51.51  Aligned_cols=74  Identities=12%  Similarity=0.065  Sum_probs=58.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHh-cCCccEEEEcCCCcc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAVH  118 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~-~~~~d~v~d~~g~~~  118 (220)
                      +|+|+|+|.+|..+++.+...|.+|++++.++++.+.+.+.++...+. |..+.+.+++. ..++|+++-+++.+.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   77 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE   77 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH
Confidence            488999999999999999999999999999988877766666765433 44455566654 458999999999874

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.62  E-value=0.00039  Score=54.59  Aligned_cols=75  Identities=11%  Similarity=0.051  Sum_probs=55.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH----------cCCCEE-EcCCCHHHHHHhcCCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----------LGADSF-LVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~----------~g~~~~-~~~~~~~~~~~~~~~~d~  109 (220)
                      .+.+|||.|+ |.+|..+++.+...|.+|++++++..........          -++..+ .|..+.+.+.+...++|+
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  103 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH  103 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence            4689999997 9999999998888999999999876533222221          122222 355667777777779999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      ||.+++.
T Consensus       104 Vih~A~~  110 (351)
T 3ruf_A          104 VLHQAAL  110 (351)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999985

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.61  E-value=0.00032  Score=54.83  Aligned_cols=76  Identities=18%  Similarity=0.185  Sum_probs=55.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----C--CCEE-EcCCCHHHHHHhcC--CccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----G--ADSF-LVSRDQDEMQAAMG--TMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g--~~~~-~~~~~~~~~~~~~~--~~d~v~  111 (220)
                      .+.+|||.|+ |.+|..+++.+...|.+|++++++.++.....+.+    +  ...+ .|..+.+.+.++..  ++|+||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            4578999997 99999999988888999999998766544333322    2  2222 35556666666554  899999


Q ss_pred             EcCCCc
Q 027664          112 DTVSAV  117 (220)
Q Consensus       112 d~~g~~  117 (220)
                      ++++..
T Consensus        84 h~A~~~   89 (341)
T 3enk_A           84 HFAALK   89 (341)
T ss_dssp             ECCCCC
T ss_pred             ECcccc
Confidence            999853

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.61  E-value=0.00037  Score=53.00  Aligned_cols=76  Identities=21%  Similarity=0.304  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE---EEcCCCHHHHHHhc-------CC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~~-------~~  106 (220)
                      -.++++||.|+ |++|..++..+...|++|++++++.++.+.+.+.   .+...   ..|..+.+.+++..       +.
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  111 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGT  111 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            35789999997 9999999987777799999999987665444332   24321   23555554443322       36


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus       112 id~li~~Ag~  121 (279)
T 3ctm_A          112 IDVFVANAGV  121 (279)
T ss_dssp             CSEEEECGGG
T ss_pred             CCEEEECCcc
Confidence            9999999873

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.61  E-value=0.00014  Score=55.39  Aligned_cols=94  Identities=13%  Similarity=0.171  Sum_probs=65.2

Q ss_pred             EEEEEcc-chhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~--  118 (220)
                      +|||.|+ |.+|..+++.+...  |.+|++++++.++...+ ...+...+ .|..+.+.+.+...++|+||.+++...  
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l-~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~   80 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTL-ADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDN   80 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHH-HHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCSCH
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHH-hhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCcCc
Confidence            5899997 99999999888777  88999999987765544 23455433 356667777777779999999998521  


Q ss_pred             -----cHHHHHhccccC--CEEEEeCCC
Q 027664          119 -----PLMPLIGLLKSQ--GKLVLLGAP  139 (220)
Q Consensus       119 -----~~~~~~~~l~~~--G~~v~~g~~  139 (220)
                           ....+++.++..  ++++.++..
T Consensus        81 ~~n~~~~~~l~~a~~~~~~~~~v~~Ss~  108 (287)
T 2jl1_A           81 TLLIVQHANVVKAARDAGVKHIAYTGYA  108 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence                 122334444433  478776643

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.61  E-value=0.00027  Score=51.00  Aligned_cols=60  Identities=17%  Similarity=0.297  Sum_probs=45.8

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhc---CCccEEEEcCCC
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM---GTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~d~v~d~~g~  116 (220)
                      ++||.|+ |.+|..+++.+. .|.+|++++++.+           ....|..+.+.++++.   +++|++|.++|.
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~   68 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------DVTVDITNIDSIKKMYEQVGKVDAIVSATGS   68 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------SEECCTTCHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------ceeeecCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            7999997 999999998887 8999999998764           1234566665555443   368999999883

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.60  E-value=0.00023  Score=54.22  Aligned_cols=76  Identities=17%  Similarity=0.205  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHhc------CCc
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM------GTM  107 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~------~~~  107 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +...   ..|..+.+.++++.      +++
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            36789999997 99999999988888999999999987766655443   3322   12444433322221      589


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus       111 D~lvnnAg~  119 (275)
T 4imr_A          111 DILVINASA  119 (275)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.60  E-value=0.00042  Score=54.60  Aligned_cols=90  Identities=20%  Similarity=0.249  Sum_probs=66.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc-c--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV-H--  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~--  118 (220)
                      .|++|.|+|.|.+|..+++.++.+|.+|++.+++....+.+ +.+|+..+   .   .+.++....|+|+-+++.. +  
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~---~---~l~ell~~aDvV~l~~Plt~~t~  235 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELE-KETGAKFV---E---DLNEMLPKCDVIVINMPLTEKTR  235 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHH-HHHCCEEC---S---CHHHHGGGCSEEEECSCCCTTTT
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHH-HhCCCeEc---C---CHHHHHhcCCEEEECCCCCHHHH
Confidence            58899999999999999999999999999999876544444 55676432   1   2444555789999888742 1  


Q ss_pred             -c-HHHHHhccccCCEEEEeCC
Q 027664          119 -P-LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~-~~~~~~~l~~~G~~v~~g~  138 (220)
                       . -...+..|+++..++.++.
T Consensus       236 ~li~~~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          236 GMFNKELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             TCBSHHHHHHSCTTEEEEECSC
T ss_pred             HhhcHHHHhcCCCCCEEEECcC
Confidence             1 2466778888888888764

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.60  E-value=0.00021  Score=54.11  Aligned_cols=75  Identities=23%  Similarity=0.220  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CccchHHHHHH---cCCCE---EEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVER---LGADS---FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~-~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++ +.++.+.+.+.   .+...   ..|..+.+.++++.       ++
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   99 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   99 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5788999997 99999999988888999999998 55444443332   34322   23555555444332       37


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus       100 ~d~vi~~Ag~  109 (274)
T 1ja9_A          100 LDFVMSNSGM  109 (274)
T ss_dssp             EEEEECCCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.59  E-value=0.00026  Score=54.92  Aligned_cols=97  Identities=14%  Similarity=0.217  Sum_probs=66.8

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC--EEEcCCCHHHHHHhcCCccEEEEc
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~--~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      .+.++.+||.+|+|. |..+..+++..|++|++++.+++..+.+.+..   |..  .-+...+.   .++.+.||+|+..
T Consensus        87 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~fD~v~~~  162 (318)
T 2fk8_A           87 DLKPGMTLLDIGCGW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---EDFAEPVDRIVSI  162 (318)
T ss_dssp             CCCTTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---GGCCCCCSEEEEE
T ss_pred             CCCCcCEEEEEcccc-hHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---HHCCCCcCEEEEe
Confidence            367899999999986 88888888887999999999988766654432   321  11112222   1223579999865


Q ss_pred             -----CCC---cccHHHHHhccccCCEEEEeCCC
Q 027664          114 -----VSA---VHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       114 -----~g~---~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                           ++.   ...+..+.+.|++||+++.....
T Consensus       163 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          163 EAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             SCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence                 332   22467778999999999876543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.59  E-value=0.00042  Score=53.37  Aligned_cols=97  Identities=14%  Similarity=0.137  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCHHHHHHhcCCccEEEEc
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      .++++.+||-+|+|. |..+..+++..|++|+.++.+++..+.+.+.   .|..  .-+...+..   ++.+.||+|+-.
T Consensus        69 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~fD~v~~~  144 (302)
T 3hem_A           69 NLEPGMTLLDIGCGW-GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDEPVDRIVSL  144 (302)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCCCCSEEEEE
T ss_pred             CCCCcCEEEEeeccC-cHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH---HcCCCccEEEEc
Confidence            468999999999985 8889999998889999999998766555433   3332  112222222   224589999853


Q ss_pred             CC-----C----------cccHHHHHhccccCCEEEEeCCC
Q 027664          114 VS-----A----------VHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       114 ~g-----~----------~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ..     .          ...+..+.+.|++||+++.....
T Consensus       145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            21     1          13467788999999999987553

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.59  E-value=3.5e-05  Score=55.38  Aligned_cols=95  Identities=17%  Similarity=0.098  Sum_probs=62.0

Q ss_pred             hhcCCCCCCEEEEEccchhHHHHHHHHHHCC----------CeEEEEeCCccchHHHHHHcCCCEEE-c--CCCHH---H
Q 027664           36 FYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG----------VKVTVISTSPSKKSEAVERLGADSFL-V--SRDQD---E   99 (220)
Q Consensus        36 ~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g----------~~vi~~~~~~~~~~~~~~~~g~~~~~-~--~~~~~---~   99 (220)
                      ....++++++||.+|+|+ |..+..+++..|          .+|++++.++....     -++. .+ .  ..+..   .
T Consensus        16 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~-----~~~~-~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           16 RHQILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPL-----EGAT-FLCPADVTDPRTSQR   88 (196)
T ss_dssp             HHCCCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCC-----TTCE-EECSCCTTSHHHHHH
T ss_pred             hcCCCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhcccC-----CCCe-EEEeccCCCHHHHHH
Confidence            344468899999999987 999999999876          68999998874311     1122 22 1  11211   1


Q ss_pred             HHHh-c-CCccEEEE-----cCCCc------------ccHHHHHhccccCCEEEEeC
Q 027664          100 MQAA-M-GTMDGIID-----TVSAV------------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       100 ~~~~-~-~~~d~v~d-----~~g~~------------~~~~~~~~~l~~~G~~v~~g  137 (220)
                      +... . +.||+|+-     +++..            ..+..+.+.|+++|+++...
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            1222 2 37999983     44432            24566788999999998764

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.58  E-value=0.00059  Score=53.46  Aligned_cols=89  Identities=17%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--  118 (220)
                      -.|++|.|+|.|.+|..+++.++.+|.+|++.+++..+ . ..+.+|++.    .+   +.++....|+|+.+++...  
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~~~~~g~~~----~~---l~ell~~aDvV~l~~P~t~~t  233 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-E-VSASFGVQQ----LP---LEEIWPLCDFITVHTPLLPST  233 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-H-HHHHTTCEE----CC---HHHHGGGCSEEEECCCCCTTT
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-h-hhhhcCcee----CC---HHHHHhcCCEEEEecCCCHHH
Confidence            36789999999999999999999999999999987654 3 335677642    12   3445557899999987642  


Q ss_pred             --cH-HHHHhccccCCEEEEeCC
Q 027664          119 --PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 --~~-~~~~~~l~~~G~~v~~g~  138 (220)
                        .+ ...+..+++++.++.++.
T Consensus       234 ~~li~~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          234 TGLLNDNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             TTSBCHHHHTTSCTTEEEEECSC
T ss_pred             HHhhCHHHHhhCCCCcEEEECCC
Confidence              12 457788999999998875

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.58  E-value=0.00025  Score=55.35  Aligned_cols=93  Identities=13%  Similarity=0.188  Sum_probs=65.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCccchHHHHHHcC---CCEEEcCCCHHHHHHhcCCccEEEEcCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVERLG---ADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~-~g~-~vi~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      +...+++|+|+|.+|...++.+.. .+. +|.+..++.++.+.+++.++   ... . ..+   .++.. ++|+|+.|+.
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~-~-~~~---~~e~v-~aDvVi~aTp  196 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISA-S-VQP---AEEAS-RCDVLVTTTP  196 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCE-E-ECC---HHHHT-SSSEEEECCC
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceE-E-ECC---HHHHh-CCCEEEEeeC
Confidence            567899999999999988876554 566 88889999888888776654   222 1 222   33445 7999999998


Q ss_pred             CcccHHHHHhccccCCEEEEeCCCC
Q 027664          116 AVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .....- ....++++-.++.+|...
T Consensus       197 ~~~pv~-~~~~l~~G~~V~~ig~~~  220 (322)
T 1omo_A          197 SRKPVV-KAEWVEEGTHINAIGADG  220 (322)
T ss_dssp             CSSCCB-CGGGCCTTCEEEECSCCS
T ss_pred             CCCcee-cHHHcCCCeEEEECCCCC
Confidence            753221 135678888888887654

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.58  E-value=0.00023  Score=53.63  Aligned_cols=75  Identities=13%  Similarity=0.132  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC------------CC-EEEcCCCHHHHHHhc---
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG------------AD-SFLVSRDQDEMQAAM---  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g------------~~-~~~~~~~~~~~~~~~---  104 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+.            .. ...|..+.+.++++.   
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   85 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV   85 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence            5688999997 999999998888889999999999876666544432            11 113555554443322   


Q ss_pred             ----CCc-cEEEEcCCC
Q 027664          105 ----GTM-DGIIDTVSA  116 (220)
Q Consensus       105 ----~~~-d~v~d~~g~  116 (220)
                          +++ |++|+++|.
T Consensus        86 ~~~~g~i~d~vi~~Ag~  102 (264)
T 2pd6_A           86 QACFSRPPSVVVSCAGI  102 (264)
T ss_dssp             HHHHSSCCSEEEECCCC
T ss_pred             HHHhCCCCeEEEECCCc
Confidence                356 999999984

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.58  E-value=0.00019  Score=54.76  Aligned_cols=100  Identities=18%  Similarity=0.150  Sum_probs=65.2

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccE
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~  109 (220)
                      ..+|...+.-..+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+++.++   .+..   +.+.+ . .+|+
T Consensus       110 ~~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~---~~~~---~~l~~-l-~~Di  181 (282)
T 3fbt_A          110 GKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK---VISY---DELSN-L-KGDV  181 (282)
T ss_dssp             HHHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSE---EEEH---HHHTT-C-CCSE
T ss_pred             HHHHHHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcC---cccH---HHHHh-c-cCCE
Confidence            3445443322468899999999999999999999999 99999999877666644432   2221   22323 3 7999


Q ss_pred             EEEcCCCcc--c---HHHHHhccccCCEEEEeCC
Q 027664          110 IIDTVSAVH--P---LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       110 v~d~~g~~~--~---~~~~~~~l~~~G~~v~~g~  138 (220)
                      ||+|++...  .   .......++++..++.+..
T Consensus       182 vInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY  215 (282)
T 3fbt_A          182 IINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIY  215 (282)
T ss_dssp             EEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCC
T ss_pred             EEECCccCccCCCccCCCCHHHcCCCCEEEEEee
Confidence            999986421  0   1112345667776666543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.58  E-value=0.0003  Score=55.68  Aligned_cols=49  Identities=33%  Similarity=0.428  Sum_probs=42.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD   89 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~   89 (220)
                      -.|++|+|.|.|.+|..+++.+...|++|++.+.+.++.+++.+.++++
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCE
Confidence            4789999999999999999999999999998888887777777777764

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.57  E-value=0.00018  Score=53.84  Aligned_cols=74  Identities=16%  Similarity=0.195  Sum_probs=54.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-CC-EEEcCCCHHHHHHh---cCCccEEEEcCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-AD-SFLVSRDQDEMQAA---MGTMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~---~~~~d~v~d~~g  115 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+. +++ +. ...|..+.+.+++.   .+++|++++++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~Ag   83 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG   83 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECCc
Confidence            4788999997 99999999988888999999999876554443 332 21 12355666555544   347999999998


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        84 ~   84 (246)
T 2ag5_A           84 F   84 (246)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.57  E-value=0.00033  Score=54.43  Aligned_cols=89  Identities=24%  Similarity=0.352  Sum_probs=66.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--  118 (220)
                      -.|.+|.|+|.|.+|..+++.++.+|.+|++.+++.++. . .+.+|+..    .+   +.+.....|+|+-+++...  
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~-~~~~g~~~----~~---l~ell~~aDvVvl~~P~~~~t  210 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-K-AEKINAKA----VS---LEELLKNSDVISLHVTVSKDA  210 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-H-HHHTTCEE----CC---HHHHHHHCSEEEECCCCCTTS
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-H-HHhcCcee----cC---HHHHHhhCCEEEEeccCChHH
Confidence            367899999999999999999999999999999887653 3 35677642    12   2233346799999987532  


Q ss_pred             --cH-HHHHhccccCCEEEEeCC
Q 027664          119 --PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 --~~-~~~~~~l~~~G~~v~~g~  138 (220)
                        .+ ...+..+++++.++.++.
T Consensus       211 ~~li~~~~l~~mk~ga~lIn~ar  233 (313)
T 2ekl_A          211 KPIIDYPQFELMKDNVIIVNTSR  233 (313)
T ss_dssp             CCSBCHHHHHHSCTTEEEEESSC
T ss_pred             HHhhCHHHHhcCCCCCEEEECCC
Confidence              22 456778889888888764

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.57  E-value=0.00036  Score=53.23  Aligned_cols=76  Identities=20%  Similarity=0.291  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-------------CccchHHHHHH---cCCCE---EEcCCCHHHH
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-------------SPSKKSEAVER---LGADS---FLVSRDQDEM  100 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~-------------~~~~~~~~~~~---~g~~~---~~~~~~~~~~  100 (220)
                      -.|+++||.|+ |++|..+++.+...|++|+++++             +.++.+++.+.   .+...   ..|..+.+.+
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            46789999997 99999999988888999999987             34444443332   33322   2355665544


Q ss_pred             HHh-------cCCccEEEEcCCC
Q 027664          101 QAA-------MGTMDGIIDTVSA  116 (220)
Q Consensus       101 ~~~-------~~~~d~v~d~~g~  116 (220)
                      +++       .+++|++++++|.
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            433       2479999999985

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.56  E-value=0.00027  Score=54.37  Aligned_cols=75  Identities=20%  Similarity=0.282  Sum_probs=54.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCCE---EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+    +...   ..|..+.+.++++       .+.
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  104 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            5689999997 99999999988888999999999987665544433    4321   2355555444332       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus       105 id~li~~Ag~  114 (302)
T 1w6u_A          105 PNIVINNAAG  114 (302)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999984

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.56  E-value=0.00039  Score=52.19  Aligned_cols=73  Identities=16%  Similarity=0.264  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCEE---EcCCCHHHHHHhc-------CCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSF---LVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.+  +...+.   .+....   .|..+.+.++++.       +++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGV   80 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999997 99999999988888999999988765  222222   243222   3555555444332       379


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++|+++|.
T Consensus        81 d~lv~~Ag~   89 (255)
T 2q2v_A           81 DILVNNAGI   89 (255)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.55  E-value=0.00018  Score=55.47  Aligned_cols=76  Identities=21%  Similarity=0.281  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc--------CCCE---EEcCCCHHHHHHhc----
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--------GADS---FLVSRDQDEMQAAM----  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~--------g~~~---~~~~~~~~~~~~~~----  104 (220)
                      -.++++||.|+ |++|..+++.+...|++|++++++.++.+...+.+        +...   ..|..+.+.++++.    
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            35689999997 99999999988889999999999877655544332        2221   13555555444332    


Q ss_pred             ---CCccEEEEcCCC
Q 027664          105 ---GTMDGIIDTVSA  116 (220)
Q Consensus       105 ---~~~d~v~d~~g~  116 (220)
                         +++|++|+++|.
T Consensus        96 ~~~g~id~li~~Ag~  110 (303)
T 1yxm_A           96 DTFGKINFLVNNGGG  110 (303)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence               379999999983

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.55  E-value=0.00053  Score=50.55  Aligned_cols=98  Identities=19%  Similarity=0.086  Sum_probs=66.6

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--CEEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+.++++||-+|+|. |..+..+++.. .+|+.++.++...+.+.+.+..  ...+...+........+.||+|+....-
T Consensus        67 ~~~~~~~vLdiG~G~-G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~~  144 (231)
T 1vbf_A           67 DLHKGQKVLEIGTGI-GYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATA  144 (231)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred             CCCCCCEEEEEcCCC-CHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEEECCcH
Confidence            468899999999985 88888888774 8999999998777666554431  1111112211100112479999876654


Q ss_pred             cccHHHHHhccccCCEEEEeCC
Q 027664          117 VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       117 ~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ....+.+.+.|+++|+++..-.
T Consensus       145 ~~~~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          145 PTLLCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             SSCCHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCcEEEEEEc
Confidence            4456788999999999987744

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.55  E-value=0.00057  Score=54.63  Aligned_cols=90  Identities=16%  Similarity=0.146  Sum_probs=66.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|+++.|+|.|.+|..+++.++.+|.+|++.+++..+.+.. +.+|+...   .+   +.++....|+|+.++....   
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~-~~~G~~~~---~~---l~ell~~aDvV~l~~Plt~~t~  262 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE-KELNLTWH---AT---REDMYPVCDVVTLNCPLHPETE  262 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH-HHHTCEEC---SS---HHHHGGGCSEEEECSCCCTTTT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhH-hhcCceec---CC---HHHHHhcCCEEEEecCCchHHH
Confidence            67899999999999999999999999999998876544433 45676431   12   3344557899998887421   


Q ss_pred             -cH-HHHHhccccCCEEEEeCC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g~  138 (220)
                       .+ ...+..|+++..++.++.
T Consensus       263 ~li~~~~l~~mk~gailIN~aR  284 (393)
T 2nac_A          263 HMINDETLKLFKRGAYIVNTAR  284 (393)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSC
T ss_pred             HHhhHHHHhhCCCCCEEEECCC
Confidence             23 456678888888888764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.55  E-value=0.00026  Score=53.48  Aligned_cols=76  Identities=20%  Similarity=0.299  Sum_probs=55.2

Q ss_pred             CCCCEEEEEcc-c-hhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---C-CC---EEEcCCCHHHHHHh-------c
Q 027664           41 KPGMHVGVVGL-G-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G-AD---SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g-~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g-~~---~~~~~~~~~~~~~~-------~  104 (220)
                      -.++++||.|+ | ++|..+++.+...|++|++++++.++.++..+.+   + ..   ...|..+.+.++++       .
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            45789999997 7 7999999888888999999999987766665544   2 11   12355555544333       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++|+++|.
T Consensus       100 g~id~li~~Ag~  111 (266)
T 3o38_A          100 GRLDVLVNNAGL  111 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCc
Confidence            479999999984

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.55  E-value=0.00041  Score=52.77  Aligned_cols=97  Identities=22%  Similarity=0.231  Sum_probs=67.1

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHHc----C--C-CEEEcCCCHHHHHHh-cCCcc
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERL----G--A-DSFLVSRDQDEMQAA-MGTMD  108 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~~----g--~-~~~~~~~~~~~~~~~-~~~~d  108 (220)
                      .+.++++||.+|+| .|..+..+++..  +.+++.++.+++..+.+.+.+    |  . ...+...+.... .+ .+.||
T Consensus        96 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~~~~~D  173 (280)
T 1i9g_A           96 DIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVD  173 (280)
T ss_dssp             TCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEE
T ss_pred             CCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCCCCcee
Confidence            47899999999998 688888999875  459999999987665554432    3  2 111222222111 11 23699


Q ss_pred             EEEEcCCCc-ccHHHHHhccccCCEEEEeC
Q 027664          109 GIIDTVSAV-HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       109 ~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  137 (220)
                      +|+-....+ ..+..+.+.|+++|+++.+.
T Consensus       174 ~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          174 RAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             EEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            998766554 46788899999999998874

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.55  E-value=0.00037  Score=55.28  Aligned_cols=90  Identities=16%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--  118 (220)
                      .|++|.|+|.|.+|..+++.++.+|.+ |++.+++..+.+.. +.+|+..+   .+   +.++....|+|+.+++...  
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~-~~~g~~~~---~~---l~ell~~aDvV~l~~P~t~~t  235 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAE-EKVGARRV---EN---IEELVAQADIVTVNAPLHAGT  235 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHH-HHTTEEEC---SS---HHHHHHTCSEEEECCCCSTTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHH-HhcCcEec---CC---HHHHHhcCCEEEECCCCChHH
Confidence            678999999999999999999999997 99998876555443 55665421   12   2333447899999887631  


Q ss_pred             --cH-HHHHhccccCCEEEEeCC
Q 027664          119 --PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 --~~-~~~~~~l~~~G~~v~~g~  138 (220)
                        .+ ...+..|++++.++.++.
T Consensus       236 ~~li~~~~l~~mk~ga~lIn~ar  258 (364)
T 2j6i_A          236 KGLINKELLSKFKKGAWLVNTAR  258 (364)
T ss_dssp             TTCBCHHHHTTSCTTEEEEECSC
T ss_pred             HHHhCHHHHhhCCCCCEEEECCC
Confidence              22 356788888888888875

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.54  E-value=0.00049  Score=51.22  Aligned_cols=75  Identities=17%  Similarity=0.280  Sum_probs=49.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCccchHHHHHH---cCCCE---EEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVER---LGADS---FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~-~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|+++ .+++++.+...+.   .+...   ..|..+.+.++++.       ++
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4688999997 999999999888889999998 4555444443332   24322   23555555444332       37


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus        84 ~d~vi~~Ag~   93 (247)
T 2hq1_A           84 IDILVNNAGI   93 (247)
T ss_dssp             CCEEEECC--
T ss_pred             CCEEEECCCC
Confidence            9999999875

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.54  E-value=0.00038  Score=53.24  Aligned_cols=75  Identities=28%  Similarity=0.327  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE----EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS----FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~----~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.   .+...    ..|..+.+.++++       .++
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  106 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG  106 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999997 9999999998888899999999998766554332   23211    1355555444332       247


Q ss_pred             ccEEEEc-CCC
Q 027664          107 MDGIIDT-VSA  116 (220)
Q Consensus       107 ~d~v~d~-~g~  116 (220)
                      +|++|++ .|.
T Consensus       107 iD~li~naag~  117 (286)
T 1xu9_A          107 LDMLILNHITN  117 (286)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCccC
Confidence            9999998 453

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.54  E-value=9.9e-05  Score=56.22  Aligned_cols=102  Identities=19%  Similarity=0.123  Sum_probs=65.1

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--CE-EEcCCCHHHHHHhc-CC
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DS-FLVSRDQDEMQAAM-GT  106 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~~-~~~~~~~~~~~~~~-~~  106 (220)
                      ..++...+.--.+++++|+|+|++|.+++..+...|.+|+++.++.++.+.+.+.++.  .. ..+.      .+.. +.
T Consensus       107 ~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~------~~~~~~~  180 (272)
T 1p77_A          107 VTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSM------DSIPLQT  180 (272)
T ss_dssp             HHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEG------GGCCCSC
T ss_pred             HHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeH------HHhccCC
Confidence            3344443322367899999999999999988888899999999998877777666542  11 1221      1222 47


Q ss_pred             ccEEEEcCCCcccHH---HHHhccccCCEEEEeCC
Q 027664          107 MDGIIDTVSAVHPLM---PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       107 ~d~v~d~~g~~~~~~---~~~~~l~~~G~~v~~g~  138 (220)
                      +|++++|++....-.   .....+.++..++.+..
T Consensus       181 ~DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y  215 (272)
T 1p77_A          181 YDLVINATSAGLSGGTASVDAEILKLGSAFYDMQY  215 (272)
T ss_dssp             CSEEEECCCC-------CCCHHHHHHCSCEEESCC
T ss_pred             CCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeC
Confidence            999999998753211   01123455666666654

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.54  E-value=0.00033  Score=55.38  Aligned_cols=74  Identities=11%  Similarity=0.033  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHH--CCCeEEEEeCCccc-------------hHHHHHHcCCCE-EEcCCCHHHHHHh-
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKA--MGVKVTVISTSPSK-------------KSEAVERLGADS-FLVSRDQDEMQAA-  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~--~g~~vi~~~~~~~~-------------~~~~~~~~g~~~-~~~~~~~~~~~~~-  103 (220)
                      .+.+|||.|+ |.+|..+++.+..  .|.+|++++++...             .... ...+... ..|..+.+.+.++ 
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~   87 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL-IGFKGEVIAADINNPLDLRRLE   87 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG-TTCCSEEEECCTTCHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc-cccCceEEECCCCCHHHHHHhh
Confidence            5689999997 9999999988777  89999999986541             1111 1112222 2355667777777 


Q ss_pred             cCCccEEEEcCCC
Q 027664          104 MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ~~~~d~v~d~~g~  116 (220)
                      ..++|+||+++|.
T Consensus        88 ~~~~D~vih~A~~  100 (362)
T 3sxp_A           88 KLHFDYLFHQAAV  100 (362)
T ss_dssp             TSCCSEEEECCCC
T ss_pred             ccCCCEEEECCcc
Confidence            5699999999984

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.54  E-value=0.0002  Score=52.49  Aligned_cols=91  Identities=21%  Similarity=0.303  Sum_probs=61.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCc-----
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAV-----  117 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~-----  117 (220)
                      +|||.|+ |.+|..+++.+...|.+|++++++.++...+ ...+.+.+ .|..+.+.  +..+++|+||.++|..     
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~   78 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR-LGATVATLVKEPLVLTE--ADLDSVDAVVDALSVPWGSGR   78 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-TCTTSEEEECCGGGCCH--HHHTTCSEEEECCCCCTTSSC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc-cCCCceEEecccccccH--hhcccCCEEEECCccCCCcch
Confidence            5899998 9999999998888899999999997665443 22244333 23333333  4446899999999862     


Q ss_pred             -----ccHHHHHhcccc-CCEEEEeCC
Q 027664          118 -----HPLMPLIGLLKS-QGKLVLLGA  138 (220)
Q Consensus       118 -----~~~~~~~~~l~~-~G~~v~~g~  138 (220)
                           .....+++.++. +++++.++.
T Consensus        79 ~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           79 GYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             THHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             hhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence                 012334455543 478888754

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.53  E-value=0.00072  Score=52.13  Aligned_cols=93  Identities=19%  Similarity=0.258  Sum_probs=62.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-----chHHHH--HHcCCCEE-EcCCCHHHHHHhcCCccEEEEc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-----KKSEAV--ERLGADSF-LVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-----~~~~~~--~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      ..+|+|.|+ |.+|..+++.+...|.+|++++++..     +...+.  +..++..+ .|..+.+.+.+...++|+||.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            356999997 99999999988888999999998842     222221  12344333 3566677777777799999999


Q ss_pred             CCCc------ccHHHHHhccccC---CEEEE
Q 027664          114 VSAV------HPLMPLIGLLKSQ---GKLVL  135 (220)
Q Consensus       114 ~g~~------~~~~~~~~~l~~~---G~~v~  135 (220)
                      ++..      .....+++.++..   ++++.
T Consensus        84 a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v~  114 (313)
T 1qyd_A           84 LAGGVLSHHILEQLKLVEAIKEAGNIKRFLP  114 (313)
T ss_dssp             CCCSSSSTTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred             CccccchhhHHHHHHHHHHHHhcCCCceEEe
Confidence            9853      1233445555443   37763

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.53  E-value=0.00041  Score=53.39  Aligned_cols=92  Identities=16%  Similarity=0.186  Sum_probs=62.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc-------cchHHHH--HHcCCCEE-EcCCCHHHHHHhcCCccEEE
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-------SKKSEAV--ERLGADSF-LVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~-------~~~~~~~--~~~g~~~~-~~~~~~~~~~~~~~~~d~v~  111 (220)
                      +.+|+|.|+ |.+|..+++.+...|.+|++++++.       ++.+.+.  +..++..+ .|..+.+.+.+...++|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            357999997 9999999988877799999999886       3332221  23455433 46667777777777999999


Q ss_pred             EcCCCcc--cHHHHHhccccC---CEEE
Q 027664          112 DTVSAVH--PLMPLIGLLKSQ---GKLV  134 (220)
Q Consensus       112 d~~g~~~--~~~~~~~~l~~~---G~~v  134 (220)
                      .+++...  ....+++.++..   ++++
T Consensus        82 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           82 CAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             ECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             ECCcccccccHHHHHHHHHhcCCceEEe
Confidence            9998642  223444444432   4666

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.52  E-value=0.0004  Score=54.27  Aligned_cols=72  Identities=24%  Similarity=0.337  Sum_probs=53.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+|||.|+ |.+|..+++.+...|.+|++++++..+...+ ...++..+ .|..+.+.+.+...++|+||.+++.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL-AYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGG-GGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhh-ccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            47999997 9999999998888899999999987655433 22344333 3556667777777789999999874

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.52  E-value=0.0024  Score=50.33  Aligned_cols=131  Identities=15%  Similarity=0.163  Sum_probs=81.8

Q ss_pred             CEEEEEccchhHHHHHHHHHHC-CCeEEEE-eCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAM-GVKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~-g~~vi~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  121 (220)
                      -+|.|+|+|.+|...+..++.. +++++.+ +++.++.+.+.+.+|+..   +.+.+.+.+ ...+|+|+.|+......+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~---~~~~~~~l~-~~~~D~V~i~tp~~~h~~   81 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAG---DATMEALLA-REDVEMVIITVPNDKHAE   81 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCC---CSSHHHHHH-CSSCCEEEECSCTTSHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCC---cCCHHHHhc-CCCCCEEEEeCChHHHHH
Confidence            4689999999999888877766 7787755 555656666667777653   334333221 137999999999987778


Q ss_pred             HHHhccccCCEEEEeCCCCCCCCCCchh---h----hcCCe-EEEEEecCCHHHHHHHHHHHHcCCCcc
Q 027664          122 PLIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTGRK-IVGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       122 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~~-~~~~~~~~~~~~~~~~~~~i~~g~i~~  182 (220)
                      .+..++..|-.+++ .   .+...+...   +    -.++. ...++..+....++.+.+++++|.+-.
T Consensus        82 ~~~~al~~gk~vl~-E---KP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~  146 (354)
T 3db2_A           82 VIEQCARSGKHIYV-E---KPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDTKEIGE  146 (354)
T ss_dssp             HHHHHHHTTCEEEE-E---SSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHcCCEEEE-c---cCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHhcCCCCC
Confidence            88888877755443 2   222222221   1    11222 334444444455677777888877753

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.52  E-value=0.00025  Score=52.93  Aligned_cols=76  Identities=21%  Similarity=0.379  Sum_probs=53.8

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---C-C-CEE--EcC--CCHHHHHHh-------
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G-A-DSF--LVS--RDQDEMQAA-------  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g-~-~~~--~~~--~~~~~~~~~-------  103 (220)
                      -.++++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+   + . ..+  ++.  .+.+.++++       
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            45789999997 99999999988888999999999987766554433   2 1 112  233  444433322       


Q ss_pred             cCCccEEEEcCCC
Q 027664          104 MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ~~~~d~v~d~~g~  116 (220)
                      .+++|++++++|.
T Consensus        92 ~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 FGRLDGLLHNASI  104 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2489999999884

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.52  E-value=0.00017  Score=54.19  Aligned_cols=90  Identities=17%  Similarity=0.217  Sum_probs=59.1

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhc----CCccEEEEcCCCcc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM----GTMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~d~v~d~~g~~~  118 (220)
                      +++||.|+ |++|..+++.+...|++|++++++.++.+.       ....|..+.+.++++.    +++|++|+++|...
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-------~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~   74 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-------DLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGP   74 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------CTTSHHHHHHHHHHHHTTCTTCCSEEEECCCCCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-------ccccCCCCHHHHHHHHHHhCCCCCEEEECCCCCC
Confidence            46899997 999999999888889999999988754321       1112223334444443    46799999998542


Q ss_pred             ---c---------------HHHHHhcccc--CCEEEEeCCCC
Q 027664          119 ---P---------------LMPLIGLLKS--QGKLVLLGAPE  140 (220)
Q Consensus       119 ---~---------------~~~~~~~l~~--~G~~v~~g~~~  140 (220)
                         .               .+.++..+.+  .|+++.++...
T Consensus        75 ~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           75 QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             CcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence               0               2334444433  38999887643

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.51  E-value=0.00019  Score=53.90  Aligned_cols=97  Identities=19%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCHHHHHHhcC-CccE
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMG-TMDG  109 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~~~~~~~~~-~~d~  109 (220)
                      ..+.++++||..|+|. |..+..+++..  +.+++.++.+++..+.+.+.   .|..  ..+...+..  ..+.+ .||+
T Consensus        89 ~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~D~  165 (255)
T 3mb5_A           89 AGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY--EGIEEENVDH  165 (255)
T ss_dssp             TTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG--GCCCCCSEEE
T ss_pred             hCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh--hccCCCCcCE
Confidence            3468999999999986 88888898885  46999999998766655443   2432  122222221  11222 6999


Q ss_pred             EEEcCCCc-ccHHHHHhccccCCEEEEeC
Q 027664          110 IIDTVSAV-HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       110 v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  137 (220)
                      |+-..+.+ ..+..+.+.|+++|+++...
T Consensus       166 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          166 VILDLPQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             EEECSSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            99776654 36888999999999998863

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.51  E-value=0.00046  Score=52.75  Aligned_cols=76  Identities=21%  Similarity=0.269  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC----------------ccchHHHHHH---cCCCE---EEcCCCH
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS----------------PSKKSEAVER---LGADS---FLVSRDQ   97 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~----------------~~~~~~~~~~---~g~~~---~~~~~~~   97 (220)
                      -.|+++||.|+ +++|..+++.+...|++|++++++                .++.++..+.   .+...   ..|..+.
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   88 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY   88 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence            35789999997 899999999888899999999876                3333333222   23322   2355665


Q ss_pred             HHHHHh-------cCCccEEEEcCCC
Q 027664           98 DEMQAA-------MGTMDGIIDTVSA  116 (220)
Q Consensus        98 ~~~~~~-------~~~~d~v~d~~g~  116 (220)
                      +.++++       .+++|++++++|.
T Consensus        89 ~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           89 DALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            544433       2479999999984

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.51  E-value=0.00069  Score=51.97  Aligned_cols=74  Identities=24%  Similarity=0.221  Sum_probs=55.3

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCccchH-HHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKKS-EAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g-~~vi~~~~~~~~~~-~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .++|||.|+ |.+|..+++.+...| .+|+++++++++.. ......+++.+ .|..+.+.+.+...++|.||.+++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   82 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNY   82 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCCC
Confidence            468999998 999999998777778 89999999876532 11233455433 4666777777777899999999874

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.51  E-value=0.00035  Score=51.94  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=51.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCccchHHHHHH---cCCC----EEEcCCCHHHHHHh-------cCC
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVER---LGAD----SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~-~~~~~~~~~~~~~---~g~~----~~~~~~~~~~~~~~-------~~~  106 (220)
                      ++++||.|+ |++|..+++.+...|++|+++ .++.++.+.+.+.   .+..    ...|..+.+.++++       .++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            367999997 999999999888899999988 6776655444332   2322    22355565544433       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus        81 ~d~li~~Ag~   90 (245)
T 2ph3_A           81 LDTLVNNAGI   90 (245)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.51  E-value=0.00061  Score=53.69  Aligned_cols=75  Identities=24%  Similarity=0.406  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-------hHHHH---HHcCCCE---EEcCCCHHHHHHh----
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-------KSEAV---ERLGADS---FLVSRDQDEMQAA----  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-------~~~~~---~~~g~~~---~~~~~~~~~~~~~----  103 (220)
                      .|+++||.|+ +++|..+++.+...|++|++++++.++       .+...   +..+...   ..|..+.+.++++    
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~  123 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKA  123 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence            5789999997 999999999888889999999998764       12222   3334322   2356665544433    


Q ss_pred             ---cCCccEEEEcCCC
Q 027664          104 ---MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ---~~~~d~v~d~~g~  116 (220)
                         .+++|++++++|.
T Consensus       124 ~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          124 IKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence               2489999999985

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.51  E-value=0.0033  Score=49.10  Aligned_cols=129  Identities=14%  Similarity=0.165  Sum_probs=79.5

Q ss_pred             EEEEEccchhHHHHHHHHHHC-CCeEEE-EeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM-GVKVTV-ISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~-g~~vi~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  122 (220)
                      +|.|+|+|.+|...+..++.. +.+++. .++++++.+.+.+.+|..    +.+.+.+.+ ...+|+|+.|+......+.
T Consensus         5 ~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~----~~~~~~~l~-~~~~D~V~i~tp~~~h~~~   79 (331)
T 4hkt_A            5 RFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE----VRTIDAIEA-AADIDAVVICTPTDTHADL   79 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE----ECCHHHHHH-CTTCCEEEECSCGGGHHHH
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC----cCCHHHHhc-CCCCCEEEEeCCchhHHHH
Confidence            688999999999888776664 678775 555566666777777765    334333222 1279999999998877777


Q ss_pred             HHhccccCCEEEEeCCCCCCCCCCchh---h----hcCCeE-EEEEecCCHHHHHHHHHHHHcCCCcc
Q 027664          123 LIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTGRKI-VGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       123 ~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~~~-~~~~~~~~~~~~~~~~~~i~~g~i~~  182 (220)
                      +..++..|..+ ++.   .+...+...   +    -.++.. ..++.......++.+.+++.+|.+-.
T Consensus        80 ~~~al~~gk~v-~~E---KP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~  143 (331)
T 4hkt_A           80 IERFARAGKAI-FCE---KPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDDGRIGE  143 (331)
T ss_dssp             HHHHHHTTCEE-EEC---SCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHcCCcE-EEe---cCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHcCCCCc
Confidence            88888776554 442   232332221   1    122332 23333333345677777788877653

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.50  E-value=0.00035  Score=52.68  Aligned_cols=75  Identities=16%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCccchHHHHHHc---CCCEE---EcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVERL---GADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~-~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|+++ .++.++.++..+.+   +....   .|..+.+.++++       .++
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR   82 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 999999999888899999887 67766555554433   33222   355555544333       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        83 id~lv~nAg~   92 (258)
T 3oid_A           83 LDVFVNNAAS   92 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999974

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.50  E-value=0.00037  Score=53.25  Aligned_cols=76  Identities=11%  Similarity=0.209  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-ccchHHHHHHc----CCCEE---EcCCCHHHHHHh-------c
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVERL----GADSF---LVSRDQDEMQAA-------M  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~-~~~~~~~~~~~----g~~~~---~~~~~~~~~~~~-------~  104 (220)
                      -.++++||.|+ |++|..+++.+...|++|++++++ .++.+...+.+    +....   .|..+.+.++++       .
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            35689999997 999999999888899999999984 34444433332    22222   245555444332       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++++++|.
T Consensus       103 g~iD~lv~nAg~  114 (281)
T 3v2h_A          103 GGADILVNNAGV  114 (281)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999985

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.50  E-value=0.00022  Score=52.53  Aligned_cols=95  Identities=16%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHh-cCCccEEEEcCCCcc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA-MGTMDGIIDTVSAVH  118 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~d~v~d~~g~~~  118 (220)
                      ++++.+||-+|+|. |..+..+++. |.+|+.++.++...+.+.+...--.++..+-.+.+... .+.||+|+.......
T Consensus        46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~~~~  123 (226)
T 3m33_A           46 LTPQTRVLEAGCGH-GPDAARFGPQ-AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTS  123 (226)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG-SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEESCCSG
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHc-CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCCCHHH
Confidence            47889999999874 7777778777 88999999998877766554332222221111111111 247999998765556


Q ss_pred             cHHHHHhccccCCEEEEe
Q 027664          119 PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       119 ~~~~~~~~l~~~G~~v~~  136 (220)
                      .+..+.+.|+++|+++..
T Consensus       124 ~l~~~~~~LkpgG~l~~~  141 (226)
T 3m33_A          124 VILRLPELAAPDAHFLYV  141 (226)
T ss_dssp             GGGGHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCcEEEEe
Confidence            788999999999999943

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.49  E-value=0.00099  Score=50.29  Aligned_cols=77  Identities=17%  Similarity=0.206  Sum_probs=52.8

Q ss_pred             CCCCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCccch---HHHHHHcCC-C-EEEcCCCHHHHHHh-------c
Q 027664           40 DKPGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPSKK---SEAVERLGA-D-SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        40 ~~~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~~~~---~~~~~~~g~-~-~~~~~~~~~~~~~~-------~  104 (220)
                      ..+++++||.|+   |++|..+++.+...|++|++++++....   +++.+..+. . ...|..+.+.++++       .
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            357899999984   6999999988888899999998885432   233333442 2 22455665544433       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++|+++|.
T Consensus        91 g~id~lv~nAg~  102 (271)
T 3ek2_A           91 DSLDGLVHSIGF  102 (271)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999874

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.49  E-value=0.00022  Score=54.66  Aligned_cols=75  Identities=12%  Similarity=0.132  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc-cchHHHHHH----cCCCE---EEcCCC----HHHHHHh-----
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVER----LGADS---FLVSRD----QDEMQAA-----  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~-~~~~~~~~~----~g~~~---~~~~~~----~~~~~~~-----  103 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++. ++.+.+.+.    .+...   ..|..+    .+.++++     
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~  101 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF  101 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence            5688999997 9999999988888899999999987 655444333    23221   235555    5444332     


Q ss_pred             --cCCccEEEEcCCC
Q 027664          104 --MGTMDGIIDTVSA  116 (220)
Q Consensus       104 --~~~~d~v~d~~g~  116 (220)
                        .+++|++|+++|.
T Consensus       102 ~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A          102 RAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCC
Confidence              2479999999884

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.49  E-value=0.00034  Score=52.42  Aligned_cols=100  Identities=16%  Similarity=0.236  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCccchHHHHHHc---CCCEE---EcCCCHHHHHHhc--------
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVERL---GADSF---LVSRDQDEMQAAM--------  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~-~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~~~~--------  104 (220)
                      -.++++||.|+ |++|..+++.+...|++|+++ .++.++.++..+.+   +....   .|..+.+.++++.        
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   84 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence            45789999997 899999999888899999886 45554444443332   32211   3444443332221        


Q ss_pred             -----CCccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          105 -----GTMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       105 -----~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                           +.+|++++++|...                         ..+.++..++++|+++.++...
T Consensus        85 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~  150 (255)
T 3icc_A           85 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA  150 (255)
T ss_dssp             HHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred             ccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChh
Confidence                 14999999988521                         0122344556778999887654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.49  E-value=0.00032  Score=53.56  Aligned_cols=76  Identities=20%  Similarity=0.244  Sum_probs=51.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CccchHHHHHH---cCCCE---EEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~-~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~-------~~  105 (220)
                      ..++++||.|+ |++|..+++.+...|++|+++++ +.++.+...+.   .+...   ..|..+.+.++++       .+
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45789999997 99999999988889999999985 54444444333   23322   2355554443332       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus       107 ~iD~lvnnAg~  117 (280)
T 4da9_A          107 RIDCLVNNAGI  117 (280)
T ss_dssp             CCCEEEEECC-
T ss_pred             CCCEEEECCCc
Confidence            89999999985

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.49  E-value=0.00051  Score=51.83  Aligned_cols=99  Identities=15%  Similarity=0.157  Sum_probs=66.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHH--HHHcCC---CEEEcCCCHHHHHHh-------cCCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEA--VERLGA---DSFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~--~~~~g~---~~~~~~~~~~~~~~~-------~~~~d  108 (220)
                      +|+++||.|+ +++|.++++.+...|++|++++++.++.+.+  ..+.+.   ....|..+++.++++       .+++|
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD   85 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRLD   85 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            5899999997 8999999988888899999999987754322  123332   122455665544332       24799


Q ss_pred             EEEEcCCCcc------------------------cHHHHHhccc-cCCEEEEeCCCC
Q 027664          109 GIIDTVSAVH------------------------PLMPLIGLLK-SQGKLVLLGAPE  140 (220)
Q Consensus       109 ~v~d~~g~~~------------------------~~~~~~~~l~-~~G~~v~~g~~~  140 (220)
                      ++++++|-..                        ..+.++..|+ .+|+|+.++...
T Consensus        86 iLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~  142 (258)
T 4gkb_A           86 GLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKT  142 (258)
T ss_dssp             EEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTH
T ss_pred             EEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehh
Confidence            9999998521                        0123344553 479999987654

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.48  E-value=0.00027  Score=52.71  Aligned_cols=73  Identities=15%  Similarity=0.115  Sum_probs=52.0

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEE-e--CCccchHHHHHHc-CCCEEEcCCCHH-HHHHhc---CCccEEEEc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-S--TSPSKKSEAVERL-GADSFLVSRDQD-EMQAAM---GTMDGIIDT  113 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~-~--~~~~~~~~~~~~~-g~~~~~~~~~~~-~~~~~~---~~~d~v~d~  113 (220)
                      ++++||.|+ |++|..+++.+...|++|+++ .  ++.++.+.+.+.+ +. .+.+..+.+ .+++..   +++|+++++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~g~iD~lv~~   79 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGT-IALAEQKPERLVDATLQHGEAIDTIVSN   79 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTE-EECCCCCGGGHHHHHGGGSSCEEEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCC-cccCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            467899997 999999999888889999998 5  8877666665555 32 233444432 333332   479999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        80 Ag~   82 (244)
T 1zmo_A           80 DYI   82 (244)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            874

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.48  E-value=0.00028  Score=53.73  Aligned_cols=96  Identities=20%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHH---cCC--CEEEcCCCHHHHHHhc-CCccEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGA--DSFLVSRDQDEMQAAM-GTMDGI  110 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~---~g~--~~~~~~~~~~~~~~~~-~~~d~v  110 (220)
                      .+.++++||..|+|. |..+..+++..  +.+++.++.+++..+.+.+.   .+.  ...+...+....  +. +.||+|
T Consensus       109 ~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~V  185 (277)
T 1o54_A          109 DVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FDEKDVDAL  185 (277)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CSCCSEEEE
T ss_pred             CCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--ccCCccCEE
Confidence            468899999999986 88888999885  45999999988766555433   243  111212221111  22 369999


Q ss_pred             EEcCCCc-ccHHHHHhccccCCEEEEeC
Q 027664          111 IDTVSAV-HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 ~d~~g~~-~~~~~~~~~l~~~G~~v~~g  137 (220)
                      +-..+.+ ..+..+.+.|+++|+++...
T Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          186 FLDVPDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             EECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             EECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            9766654 56788999999999998874

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.48  E-value=0.00039  Score=52.26  Aligned_cols=98  Identities=17%  Similarity=0.138  Sum_probs=65.8

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--CEEEcCCCHHHHHHh-cCCccEEEEcCC
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSFLVSRDQDEMQAA-MGTMDGIIDTVS  115 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~-~~~~d~v~d~~g  115 (220)
                      .++++.+||-+|+| .|..+..+++..|.+|++++.++...+.+.+....  ..-+...+.... .. .+.||+|+....
T Consensus        52 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~~~~~~fD~v~~~~~  129 (266)
T 3ujc_A           52 ELNENSKVLDIGSG-LGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTK-EFPENNFDLIYSRDA  129 (266)
T ss_dssp             CCCTTCEEEEETCT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC-CCCTTCEEEEEEESC
T ss_pred             CCCCCCEEEEECCC-CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC-CCCCCcEEEEeHHHH
Confidence            36789999999998 68888888887788999999998877766544321  111111111111 11 237999986533


Q ss_pred             Cc--------ccHHHHHhccccCCEEEEeCC
Q 027664          116 AV--------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       116 ~~--------~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      -.        ..+..+.+.|++||+++....
T Consensus       130 l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          130 ILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            21        135778889999999998754

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.48  E-value=0.00034  Score=52.41  Aligned_cols=99  Identities=13%  Similarity=0.091  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCH-HHHHHhcC--CccE
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQ-DEMQAAMG--TMDG  109 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~-~~~~~~~~--~~d~  109 (220)
                      ..++.+||-+|+|. |..+..+++..  +.+|+.++.+++..+.+.+.   .|..  ..+-..+. +.+....+  .||+
T Consensus        61 ~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~  139 (248)
T 3tfw_A           61 LTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL  139 (248)
T ss_dssp             HHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred             hcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence            45789999999874 88888999887  46999999998766555433   3432  12222332 23333333  7999


Q ss_pred             EEEcCCCc---ccHHHHHhccccCCEEEEeCCC
Q 027664          110 IIDTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       110 v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ||-.....   ..++.+.+.|++||.++.....
T Consensus       140 V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          140 IFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             EEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             EEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            98433322   2467888999999999876543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.48  E-value=0.00028  Score=52.76  Aligned_cols=75  Identities=16%  Similarity=0.231  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-chHHHHHHcCCCEE---EcCCCHHHHHHhc--CCccEEEEcC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSF---LVSRDQDEMQAAM--GTMDGIIDTV  114 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~~~~~g~~~~---~~~~~~~~~~~~~--~~~d~v~d~~  114 (220)
                      .|+++||.|+ +++|.++++.+...|++|++++++.. +..+..++.|.+..   .|..+++.+++..  +++|++++++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNNA   87 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNNA   87 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEECC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEECC
Confidence            5899999997 89999999999999999999998753 22333345564322   3444444444433  3799999999


Q ss_pred             CC
Q 027664          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      |.
T Consensus        88 Gi   89 (247)
T 4hp8_A           88 GI   89 (247)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.48  E-value=0.00051  Score=51.48  Aligned_cols=97  Identities=21%  Similarity=0.186  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHHc----CCCEE-EcCCCHHHHHHhc-CCccEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERL----GADSF-LVSRDQDEMQAAM-GTMDGI  110 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~~----g~~~~-~~~~~~~~~~~~~-~~~d~v  110 (220)
                      .+.++++||..|+|. |..+..+++..  +.+++.++.+++..+.+.+.+    |.+.+ +...+.... .+. +.||+|
T Consensus        93 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-~~~~~~~D~v  170 (258)
T 2pwy_A           93 DLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA-ELEEAAYDGV  170 (258)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC-CCCTTCEEEE
T ss_pred             CCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc-CCCCCCcCEE
Confidence            468999999999985 88889999885  469999999987766654432    42211 111221111 122 369999


Q ss_pred             EEcCCCc-ccHHHHHhccccCCEEEEeC
Q 027664          111 IDTVSAV-HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 ~d~~g~~-~~~~~~~~~l~~~G~~v~~g  137 (220)
                      +-..+.. ..+..+.+.|+++|+++.+.
T Consensus       171 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          171 ALDLMEPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             EEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            8766654 46788999999999999874

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.48  E-value=0.00062  Score=51.24  Aligned_cols=74  Identities=16%  Similarity=0.218  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh--------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA--------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~--------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+.+   +...   ..|..+.+.++++        .++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   83 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGR   83 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4688999997 99999999988888999999999877665554433   3221   1355555433322        347


Q ss_pred             ccEEEEcCC
Q 027664          107 MDGIIDTVS  115 (220)
Q Consensus       107 ~d~v~d~~g  115 (220)
                      +|++++++|
T Consensus        84 id~lvnnAg   92 (260)
T 2qq5_A           84 LDVLVNNAY   92 (260)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEECCc
Confidence            899999994

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.48  E-value=0.00027  Score=53.60  Aligned_cols=75  Identities=23%  Similarity=0.279  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-ccchHHHHH---HcCCCE---EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~-~~~~~~~~~---~~g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++ .++.+.+.+   ..+...   ..|..+.+.++++       .++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~  106 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGR  106 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 999999999888899999998884 433333322   234322   2355565544333       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       107 id~lv~nAg~  116 (269)
T 4dmm_A          107 LDVLVNNAGI  116 (269)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999885

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.47  E-value=0.00032  Score=52.17  Aligned_cols=97  Identities=19%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCH-HHHHHh--------
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQ-DEMQAA--------  103 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~-~~~~~~--------  103 (220)
                      ..++++||.+|+| .|..+..+++..  +.+|+.++.+++..+.+.+.   .|..  ..+...+. +.+...        
T Consensus        58 ~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~  136 (239)
T 2hnk_A           58 ISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS  136 (239)
T ss_dssp             HHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred             hhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence            4678899999998 588899999987  56999999998766555443   3432  12222332 223333        


Q ss_pred             -------c-CCccEEEEcCCCc---ccHHHHHhccccCCEEEEeC
Q 027664          104 -------M-GTMDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       104 -------~-~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g  137 (220)
                             . +.||+|+...+..   ..+..+.+.|+++|.++...
T Consensus       137 ~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          137 WASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             GGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence                   1 5799998776543   24577889999999999864

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.47  E-value=0.00043  Score=51.47  Aligned_cols=74  Identities=15%  Similarity=0.149  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCC--CeEEEEeCCccchHHHHHHc-CCC---EEEcCCCHHHHHHhc-------C--
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERL-GAD---SFLVSRDQDEMQAAM-------G--  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~~-g~~---~~~~~~~~~~~~~~~-------~--  105 (220)
                      .++++||.|+ |++|..+++.+...|  .+|++++++.++.+.+ +.+ +..   ...|..+.+.++++.       +  
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   80 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL-KSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH-HTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHH-HhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence            3578999997 999999999888889  8999999998776655 333 221   123555554443332       2  


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++|+++|.
T Consensus        81 ~id~li~~Ag~   91 (250)
T 1yo6_A           81 GLSLLINNAGV   91 (250)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCcc
Confidence            79999999874

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.46  E-value=0.0012  Score=49.56  Aligned_cols=73  Identities=14%  Similarity=0.025  Sum_probs=49.8

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHH--HcCCCE-EEcCCCHH-HHHHh---cCCccEEEEcCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE--RLGADS-FLVSRDQD-EMQAA---MGTMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~--~~g~~~-~~~~~~~~-~~~~~---~~~~d~v~d~~g  115 (220)
                      +++||.|+ |++|..+++.+...|++|++++++.++.+.+.+  ..+.+. .++..+.+ .+++.   .+++|++++++|
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~nAg   81 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI   81 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            46899997 999999999888889999999988776554432  224322 22443322 22222   358999999987


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        82 ~   82 (254)
T 1zmt_A           82 F   82 (254)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=97.46  E-value=0.00027  Score=53.17  Aligned_cols=94  Identities=18%  Similarity=0.103  Sum_probs=61.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC---------------------CEEEcCCCHHH
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---------------------DSFLVSRDQDE   99 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~---------------------~~~~~~~~~~~   99 (220)
                      .++.+||..|||. |..+..+++. |.+|++++.++...+.+.+..+.                     ..-+-..+...
T Consensus        67 ~~~~~vLD~GCG~-G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGK-AIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTT-CTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCC-cHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            5788999999974 7777777765 89999999999877777555431                     11111111111


Q ss_pred             HHHhc-CCccEEEEcCCC----c----ccHHHHHhccccCCEEEEe
Q 027664          100 MQAAM-GTMDGIIDTVSA----V----HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       100 ~~~~~-~~~d~v~d~~g~----~----~~~~~~~~~l~~~G~~v~~  136 (220)
                      +.... +.||+|++...-    .    ..+..+.+.|++||+++++
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            11111 479999975321    1    1356678899999998644

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.46  E-value=0.0004  Score=52.85  Aligned_cols=76  Identities=20%  Similarity=0.337  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------ccchHHHHH---HcCCCEE---EcCCCHHHHH
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS------------PSKKSEAVE---RLGADSF---LVSRDQDEMQ  101 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~------------~~~~~~~~~---~~g~~~~---~~~~~~~~~~  101 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++            .++.+...+   ..+....   .|..+.+.++
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS   90 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            35789999997 999999999888899999999876            333333222   2343222   3555655444


Q ss_pred             Hhc-------CCccEEEEcCCC
Q 027664          102 AAM-------GTMDGIIDTVSA  116 (220)
Q Consensus       102 ~~~-------~~~d~v~d~~g~  116 (220)
                      ++.       +++|++++++|.
T Consensus        91 ~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           91 AALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             HHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence            332       479999999985

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.46  E-value=0.00077  Score=51.60  Aligned_cols=87  Identities=20%  Similarity=0.225  Sum_probs=60.3

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  123 (220)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+. +.|...   ..+   ..+.....|+||-|+..+......
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~---~~~---~~~~~~~aDvvi~~vp~~~~~~~v   74 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELA-ALGAER---AAT---PCEVVESCPVTFAMLADPAAAEEV   74 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-HTTCEE---CSS---HHHHHHHCSEEEECCSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-HCCCee---cCC---HHHHHhcCCEEEEEcCCHHHHHHH
Confidence            4789999999999999988889999999999988877774 445432   122   222223568999999865334443


Q ss_pred             H-------hccccCCEEEEeC
Q 027664          124 I-------GLLKSQGKLVLLG  137 (220)
Q Consensus       124 ~-------~~l~~~G~~v~~g  137 (220)
                      +       ..++++..++..+
T Consensus        75 ~~~~~~l~~~l~~~~~vi~~s   95 (287)
T 3pef_A           75 CFGKHGVLEGIGEGRGYVDMS   95 (287)
T ss_dssp             HHSTTCHHHHCCTTCEEEECS
T ss_pred             HcCcchHhhcCCCCCEEEeCC
Confidence            3       4556666666654

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.46  E-value=0.00047  Score=52.43  Aligned_cols=75  Identities=24%  Similarity=0.329  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-------hHHHHH---HcCCC---EEEcCCCHHHHHHh----
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-------KSEAVE---RLGAD---SFLVSRDQDEMQAA----  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-------~~~~~~---~~g~~---~~~~~~~~~~~~~~----  103 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++       .++..+   ..+..   ...|..+.+.++++    
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   84 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAAT   84 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            5789999997 999999999888889999999988653       222222   22432   22355665544333    


Q ss_pred             ---cCCccEEEEcCCC
Q 027664          104 ---MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ---~~~~d~v~d~~g~  116 (220)
                         .+++|++++++|.
T Consensus        85 ~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           85 VDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence               2479999999985

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.46  E-value=0.00018  Score=57.01  Aligned_cols=75  Identities=16%  Similarity=0.139  Sum_probs=55.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCCCEE-EcCC-CHHHHHHhcCCccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSF-LVSR-DQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+.+|||.|+ |.+|..+++.+... |.+|++++++.++...+....+++.+ .|.. +.+.+.+...++|+||.+++.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~  101 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAI  101 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCcc
Confidence            3578999997 99999999877766 89999999987765544322333333 3555 566666666689999999885

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.45  E-value=0.00032  Score=53.45  Aligned_cols=91  Identities=15%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL-  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~-  120 (220)
                      .+.+++|+|+|.+|.+++..+...|++|++..++.++.+.+.+.+|.. +.+  +   +.+....+|+|+.|++..... 
T Consensus       128 ~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~-~~~--~---~~~~~~~aDiVi~atp~~~~~~  201 (275)
T 2hk9_A          128 KEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLE-VVN--S---PEEVIDKVQVIVNTTSVGLKDE  201 (275)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEE-ECS--C---GGGTGGGCSEEEECSSTTSSTT
T ss_pred             CCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCe-eeh--h---HHhhhcCCCEEEEeCCCCCCCC
Confidence            578999999999999999988888999999998887766665556632 211  1   122334789999999865311 


Q ss_pred             --HH-HHhccccCCEEEEeCC
Q 027664          121 --MP-LIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 --~~-~~~~l~~~G~~v~~g~  138 (220)
                        .. ....++++..++.++.
T Consensus       202 ~~~~i~~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          202 DPEIFNYDLIKKDHVVVDIIY  222 (275)
T ss_dssp             CCCSSCGGGCCTTSEEEESSS
T ss_pred             CCCCCCHHHcCCCCEEEEcCC
Confidence              11 1345667777777655

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.45  E-value=0.00016  Score=53.64  Aligned_cols=93  Identities=24%  Similarity=0.263  Sum_probs=60.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE--EcCCCHHHHHHh-------c--CCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF--LVSRDQDEMQAA-------M--GTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~-------~--~~~d~  109 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++...      ....  .|..+.+.++++       .  +++|+
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD------SNILVDGNKNWTEQEQSILEQTASSLQGSQVDG   75 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS------EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcccccc------ccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCE
Confidence            3578999997 999999999888889999999988764321      0111  233333333222       1  47999


Q ss_pred             EEEcCCCc-------cc-------------------HHHHHhccccCCEEEEeCCCC
Q 027664          110 IIDTVSAV-------HP-------------------LMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 v~d~~g~~-------~~-------------------~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +++++|..       ..                   .+.+...++++|+++.++...
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  132 (236)
T 1ooe_A           76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  132 (236)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            99999831       00                   123345555678999887643

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.45  E-value=0.0012  Score=51.39  Aligned_cols=90  Identities=14%  Similarity=0.236  Sum_probs=63.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  121 (220)
                      ...+|.|+|.|.+|...++.+...|.+|++.++++++.+.+. +.|+...   .+   ..+.....|+||-|+..+....
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~---~~---~~e~~~~aDvVi~~vp~~~~~~  102 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLA-ALGATIH---EQ---ARAAARDADIVVSMLENGAVVQ  102 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-TTTCEEE---SS---HHHHHTTCSEEEECCSSHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-HCCCEee---CC---HHHHHhcCCEEEEECCCHHHHH
Confidence            345899999999999999988888999999999988777664 3465322   11   2333457899999998754444


Q ss_pred             HHH------hccccCCEEEEeCC
Q 027664          122 PLI------GLLKSQGKLVLLGA  138 (220)
Q Consensus       122 ~~~------~~l~~~G~~v~~g~  138 (220)
                      ..+      ..+.++..++..+.
T Consensus       103 ~v~~~~~~~~~l~~~~~vi~~st  125 (320)
T 4dll_A          103 DVLFAQGVAAAMKPGSLFLDMAS  125 (320)
T ss_dssp             HHHTTTCHHHHCCTTCEEEECSC
T ss_pred             HHHcchhHHhhCCCCCEEEecCC
Confidence            433      34566666666654

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.45  E-value=0.00077  Score=51.55  Aligned_cols=75  Identities=28%  Similarity=0.338  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-------hHHHH---HHcCCCE---EEcCCCHHHHHHh----
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-------KSEAV---ERLGADS---FLVSRDQDEMQAA----  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-------~~~~~---~~~g~~~---~~~~~~~~~~~~~----  103 (220)
                      .++++||.|+ +++|..+++.+...|++|++++++.++       .++..   +..+...   ..|..+.+.++++    
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   87 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKT   87 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            5789999997 899999999888889999999998763       22222   2334322   2355665544333    


Q ss_pred             ---cCCccEEEEcCCC
Q 027664          104 ---MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ---~~~~d~v~d~~g~  116 (220)
                         .+++|++++++|.
T Consensus        88 ~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           88 VEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHSCCSEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence               2489999999985

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.45  E-value=0.00061  Score=50.11  Aligned_cols=98  Identities=16%  Similarity=0.091  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHH---cCC--CEEEcCCC-HHHHHHhc-----CC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGA--DSFLVSRD-QDEMQAAM-----GT  106 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~---~g~--~~~~~~~~-~~~~~~~~-----~~  106 (220)
                      ..++++||-+|+| .|..+..+++..  +.+++.++.++...+.+.+.   .|.  ..-+...+ .+.+..+.     +.
T Consensus        67 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~  145 (229)
T 2avd_A           67 LIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT  145 (229)
T ss_dssp             HTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             hcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence            4678899999998 688899999876  46999999998766555433   243  11122223 23333332     57


Q ss_pred             ccEEEEcCCCc---ccHHHHHhccccCCEEEEeCC
Q 027664          107 MDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       107 ~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ||+|+-.....   ..+..+.+.|++||.++....
T Consensus       146 ~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~  180 (229)
T 2avd_A          146 FDVAVVDADKENCSAYYERCLQLLRPGGILAVLRV  180 (229)
T ss_dssp             EEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence            99987544332   247788899999999998654

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.45  E-value=0.00046  Score=51.30  Aligned_cols=74  Identities=12%  Similarity=0.122  Sum_probs=52.2

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCC-------eEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-----
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGV-------KVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-----  103 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~-------~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-----  103 (220)
                      ++++||.|+ |++|..+++.+...|+       +|++++++.++.+.+.+.+   +..   ...|..+.+.++++     
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            567999997 9999999988777798       9999999877665554443   321   12355555444332     


Q ss_pred             --cCCccEEEEcCCC
Q 027664          104 --MGTMDGIIDTVSA  116 (220)
Q Consensus       104 --~~~~d~v~d~~g~  116 (220)
                        .+++|++|+++|.
T Consensus        82 ~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           82 ERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHTSCCSEEEECCCC
T ss_pred             HhCCCCCEEEEcCCc
Confidence              2479999999884

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.45  E-value=0.00064  Score=52.63  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=63.4

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-chHHH--HHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCcc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEA--VERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~--~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      ++|||.|+ |.+|..+++.+...|.+|++++++.+ +...+  ....+++.+ .|..+.+.+.+...++|+||.+++...
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~~   91 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFPQ   91 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGGG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchhh
Confidence            46999997 99999999988888999999999875 32222  123455433 466677777777789999999998531


Q ss_pred             --cHHHHHhccccC---CEEEE
Q 027664          119 --PLMPLIGLLKSQ---GKLVL  135 (220)
Q Consensus       119 --~~~~~~~~l~~~---G~~v~  135 (220)
                        ....+++.++..   ++++.
T Consensus        92 ~~~~~~l~~aa~~~g~v~~~v~  113 (318)
T 2r6j_A           92 ILDQFKILEAIKVAGNIKRFLP  113 (318)
T ss_dssp             STTHHHHHHHHHHHCCCCEEEC
T ss_pred             hHHHHHHHHHHHhcCCCCEEEe
Confidence              233444544433   46663

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.45  E-value=0.00071  Score=51.43  Aligned_cols=75  Identities=15%  Similarity=0.203  Sum_probs=51.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHhc------CCc
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAAM------GTM  107 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~~------~~~  107 (220)
                      -.|+++||.|+ |++|..+++.+...|++|+++++.+ +.++..+.+   +..   ...|..+.+.++++.      +++
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~i  107 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD-GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRV  107 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH-HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCC
Confidence            35789999997 9999999998888899999999654 333433332   321   123555554443332      479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus       108 D~lv~nAg~  116 (273)
T 3uf0_A          108 DVLVNNAGI  116 (273)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCCC
Confidence            999999885

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.44  E-value=0.00063  Score=51.16  Aligned_cols=75  Identities=23%  Similarity=0.350  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH----cCCCE---EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~----~g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.....+.    .+...   ..|..+.+.++++       .+.
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   92 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            4678999997 9999999988888899999999866554333222    24321   2355555544332       236


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        93 id~li~~Ag~  102 (265)
T 1h5q_A           93 ISGLIANAGV  102 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999885

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.43  E-value=0.00045  Score=49.05  Aligned_cols=96  Identities=14%  Similarity=0.202  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCHHHHHHh-cCCccEEEEc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAA-MGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~~~~~~~-~~~~d~v~d~  113 (220)
                      ++++++||-+|+|. |..+..+++. +.+|+.++.+++..+.+.+.   .+.+  .++. .+...+... .+.||+|+-.
T Consensus        20 ~~~~~~vLDiGcG~-G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~~~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           20 LDDESIVVDATMGN-GNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELIL-DGHENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             CCTTCEEEESCCTT-SHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCCEEEEEcCCC-CHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-CcHHHHHhhccCCcCEEEEe
Confidence            68899999999874 8888888887 88999999998876655443   2332  2222 332222222 2369999755


Q ss_pred             CCCc---------------ccHHHHHhccccCCEEEEeCC
Q 027664          114 VSAV---------------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 ~g~~---------------~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      .+.-               ..+..+.+.|++||+++.+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            3211               124677889999999988754

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.43  E-value=0.00061  Score=50.95  Aligned_cols=97  Identities=23%  Similarity=0.223  Sum_probs=64.7

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCHHHHHHhcCCccEEEEc
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      .+.++.+||-+|+|. |..+..+++..|.+++.++.++...+.+.+.   .|..  .-+...+..... ..+.||+|+-.
T Consensus        33 ~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~V~~~  110 (256)
T 1nkv_A           33 RMKPGTRILDLGSGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-ANEKCDVAACV  110 (256)
T ss_dssp             CCCTTCEEEEETCTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-CSSCEEEEEEE
T ss_pred             CCCCCCEEEEECCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC-cCCCCCEEEEC
Confidence            468999999999975 8888899988899999999998766555332   3321  112112211111 13479999842


Q ss_pred             CC------CcccHHHHHhccccCCEEEEeC
Q 027664          114 VS------AVHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       114 ~g------~~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      -.      ....+..+.+.|++||+++...
T Consensus       111 ~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          111 GATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             SCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            11      1224678889999999998764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.43  E-value=0.0005  Score=55.50  Aligned_cols=95  Identities=17%  Similarity=0.346  Sum_probs=69.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHh-cCCccEEEEcCCCccc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAVHP  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~-~~~~d~v~d~~g~~~~  119 (220)
                      .+.+|+|+|.|.+|..+++.++..|.+|++++.++++.+.+ +..|...++ |..+.+.+++. ...+|+++-|++++..
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~-~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~   81 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETL-RKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT   81 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHH-HHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHH
Confidence            34679999999999999999999999999999999887776 567875443 55556666665 3489999999998643


Q ss_pred             HH---HHHhccccCCEEEEeC
Q 027664          120 LM---PLIGLLKSQGKLVLLG  137 (220)
Q Consensus       120 ~~---~~~~~l~~~G~~v~~g  137 (220)
                      -.   ...+.+.+..+++.-.
T Consensus        82 n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           82 NLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             HHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHHHHHHhCCCCeEEEEE
Confidence            22   2334444555665543

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.42  E-value=0.00021  Score=53.73  Aligned_cols=72  Identities=24%  Similarity=0.316  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHh------cCCccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA------MGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~------~~~~d~v~  111 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.+   +..+.++...   ..|..+.+.++++      .+++|+++
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv   84 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE---DVVADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVV   84 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH---HHHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH---HHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            4688999997 99999999888888999999998654   3334555422   2355565544333      24899999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        85 ~nAg~   89 (257)
T 3tl3_A           85 NCAGT   89 (257)
T ss_dssp             ECGGG
T ss_pred             ECCCC
Confidence            99984

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.42  E-value=0.00012  Score=55.86  Aligned_cols=101  Identities=14%  Similarity=0.029  Sum_probs=63.8

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEE
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      .++...+.--.+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+..  +.. ..   ..+.+.+....+|+|
T Consensus       106 ~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~--~~~-~~---~~~~~~~~~~~aDiV  179 (277)
T 3don_A          106 NGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL--NIN-KI---NLSHAESHLDEFDII  179 (277)
T ss_dssp             HHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS--CCE-EE---CHHHHHHTGGGCSEE
T ss_pred             HHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH--hcc-cc---cHhhHHHHhcCCCEE
Confidence            344444322357899999999999999999999999 89999999876554422  111 11   223344445589999


Q ss_pred             EEcCCCcccHH----HHHhccccCCEEEEeCC
Q 027664          111 IDTVSAVHPLM----PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       111 ~d~~g~~~~~~----~~~~~l~~~G~~v~~g~  138 (220)
                      |+|++....-.    .....++++..++.+..
T Consensus       180 InaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY  211 (277)
T 3don_A          180 INTTPAGMNGNTDSVISLNRLASHTLVSDIVY  211 (277)
T ss_dssp             EECCC-------CCSSCCTTCCSSCEEEESCC
T ss_pred             EECccCCCCCCCcCCCCHHHcCCCCEEEEecC
Confidence            99987531000    12345666776766643

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=97.42  E-value=0.00056  Score=53.60  Aligned_cols=69  Identities=17%  Similarity=0.233  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .++.+|||.|+ |.+|..+++.+...|.+|++++++..+       .+...+ .|..+.+.+.+...++|+||.+++.
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            45678999998 999999999998899999999988754       233333 4566677777777799999999875

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.42  E-value=0.00055  Score=52.09  Aligned_cols=76  Identities=22%  Similarity=0.314  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-------------CccchHHHHHH---cCCCE---EEcCCCHHHH
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-------------SPSKKSEAVER---LGADS---FLVSRDQDEM  100 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~-------------~~~~~~~~~~~---~g~~~---~~~~~~~~~~  100 (220)
                      -.|+++||.|+ +++|..+++.+...|++|+++++             +.++.++..+.   .+...   ..|..+.+.+
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   88 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL   88 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            35789999997 89999999988889999999987             33333333222   23322   2355565544


Q ss_pred             HHh-------cCCccEEEEcCCC
Q 027664          101 QAA-------MGTMDGIIDTVSA  116 (220)
Q Consensus       101 ~~~-------~~~~d~v~d~~g~  116 (220)
                      +++       .+++|++++++|.
T Consensus        89 ~~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           89 RKVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            433       2479999999985

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.42  E-value=0.00079  Score=52.69  Aligned_cols=89  Identities=18%  Similarity=0.260  Sum_probs=63.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..+++.++.+|.+|++.+++.++.+.+ ..+|....    +   +.+.....|+|+.+++...   
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~----~---l~e~l~~aDvVi~~vp~~~~t~  225 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEA-AEFQAEFV----S---TPELAAQSDFIVVACSLTPATE  225 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHH-HTTTCEEC----C---HHHHHHHCSEEEECCCCCTTTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHH-HhcCceeC----C---HHHHHhhCCEEEEeCCCChHHH
Confidence            47789999999999999999999999999999887655544 44554321    2   2222336799999987532   


Q ss_pred             -cH-HHHHhccccCCEEEEeCC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g~  138 (220)
                       .+ ...+..++++..++.++.
T Consensus       226 ~~i~~~~~~~mk~gailIn~sr  247 (330)
T 2gcg_A          226 GLCNKDFFQKMKETAVFINISR  247 (330)
T ss_dssp             TCBSHHHHHHSCTTCEEEECSC
T ss_pred             HhhCHHHHhcCCCCcEEEECCC
Confidence             22 345677888887777654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=97.42  E-value=0.00034  Score=54.55  Aligned_cols=76  Identities=18%  Similarity=0.226  Sum_probs=53.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-CCCE-EEcCCCHHHHHHhcC--CccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-GADS-FLVSRDQDEMQAAMG--TMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~--~~d~v~d~~g~  116 (220)
                      .+.+|||.|+ |.+|..+++.+...|.+|++++++........+.+ ++.. ..|..+.+.+.++..  ++|+||+++|.
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~   98 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAA   98 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            5678999997 99999999988888999999998654332111122 2221 235556666666655  89999999985


Q ss_pred             c
Q 027664          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      .
T Consensus        99 ~   99 (330)
T 2pzm_A           99 Y   99 (330)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.40  E-value=0.0029  Score=49.67  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=80.0

Q ss_pred             CEEEEEccchhHHHHHHHHHHC-CCeEEE-EeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcC--CccEEEEcCCCccc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAM-GVKVTV-ISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSAVHP  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~-g~~vi~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~d~v~d~~g~~~~  119 (220)
                      -+|.|+|+|.+|...+..++.. +.+++. .+++.++.+.+.+.+|. .++  .+   .+++..  .+|+|+.|+.....
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~-~~~--~~---~~~~l~~~~~D~V~i~tp~~~h   78 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGA-EAV--AS---PDEVFARDDIDGIVIGSPTSTH   78 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTC-EEE--SS---HHHHTTCSCCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC-cee--CC---HHHHhcCCCCCEEEEeCCchhh
Confidence            3689999999999888777665 668775 45555566666677774 332  22   334433  79999999998877


Q ss_pred             HHHHHhccccCCEEEEeCCCCCCCCCCchh------h-hcCCe-EEEEEecCCHHHHHHHHHHHHcCCCcc
Q 027664          120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFP------L-LTGRK-IVGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~------~-~~~~~-~~~~~~~~~~~~~~~~~~~i~~g~i~~  182 (220)
                      .+.+..++..|..++ +.   .+...+...      . -.++. ...++..+....++.+.+++.+|.+-.
T Consensus        79 ~~~~~~al~~gk~v~-~E---KP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~  145 (344)
T 3euw_A           79 VDLITRAVERGIPAL-CE---KPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVANQEIGN  145 (344)
T ss_dssp             HHHHHHHHHTTCCEE-EC---SCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHTTTTSS
T ss_pred             HHHHHHHHHcCCcEE-EE---CCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhcCCCCc
Confidence            777788887765544 32   222322221      1 11222 233333333355777778888887753

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.00047  Score=51.77  Aligned_cols=74  Identities=18%  Similarity=0.281  Sum_probs=53.1

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHh-------cCCccE
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~-------~~~~d~  109 (220)
                      |+++||.|+ |++|..+++.+...  |++|+.+.++.++.+++.+.++....   .|..+.+.++++       .+++|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            578999997 89999998765544  57999999998877777666654222   355555544333       247999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus        82 lvnnAg~   88 (254)
T 3kzv_A           82 LVANAGV   88 (254)
T ss_dssp             EEEECCC
T ss_pred             EEECCcc
Confidence            9999885

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.40  E-value=0.0037  Score=48.71  Aligned_cols=128  Identities=14%  Similarity=0.178  Sum_probs=74.2

Q ss_pred             EEEEEccchhHHHH-HHHHHHCCCeEEE-EeCCccchHHHHHHcCCCEEEcCCCHHHHHHhc--CCccEEEEcCCCcccH
Q 027664           45 HVGVVGLGGLGHVA-VKFAKAMGVKVTV-ISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAVHPL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~~-~~la~~~g~~vi~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~d~v~d~~g~~~~~  120 (220)
                      +|.|+|+|.+|... +..++..+.+++. .++++++.+.+.+.+|...+  +.+   .+++.  ..+|+|+.|+......
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~--~~~---~~~~l~~~~~D~V~i~tp~~~h~   76 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKS--VTS---VEELVGDPDVDAVYVSTTNELHR   76 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCC--BSC---HHHHHTCTTCCEEEECSCGGGHH
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcc--cCC---HHHHhcCCCCCEEEEeCChhHhH
Confidence            58899999999876 6444337788775 45566566666677776422  223   22332  2699999999987667


Q ss_pred             HHHHhccccCCEEEEeCCCCCCCCCCchh---h----hcCCeEE-EEEecCCHHHHHHHHHHHHcCCCc
Q 027664          121 MPLIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTGRKIV-GGSLIGGLKETQEMIDFAAKHNIR  181 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~~~~-~~~~~~~~~~~~~~~~~i~~g~i~  181 (220)
                      +.+..+++.|-.+ ++.   .+...+...   +    -.++..+ .+........++.+.+++.+|.+-
T Consensus        77 ~~~~~al~~Gk~v-~~e---kP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~iG  141 (332)
T 2glx_A           77 EQTLAAIRAGKHV-LCE---KPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAEGRIG  141 (332)
T ss_dssp             HHHHHHHHTTCEE-EEC---SSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHTTTTS
T ss_pred             HHHHHHHHCCCeE-EEe---CCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHHcCCCC
Confidence            7777777765444 442   222222221   1    1122222 223222223466666777777664

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.40  E-value=0.00051  Score=52.08  Aligned_cols=75  Identities=20%  Similarity=0.288  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHH---HHcCCCEE---EcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAV---ERLGADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~---~~~g~~~~---~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++ .+.+.   +..+....   .|..+.+.++++       .++
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  107 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGG  107 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            5789999997 999999998888889999999985443 22222   23343222   355555443332       248


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus       108 id~li~nAg~  117 (271)
T 4iin_A          108 LSYLVNNAGV  117 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999985

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.00048  Score=52.78  Aligned_cols=75  Identities=13%  Similarity=0.171  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCC---eEEEEeCCccchHHHHHHc-----CCCE---EEcCCCHHHHHHhc-----
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGV---KVTVISTSPSKKSEAVERL-----GADS---FLVSRDQDEMQAAM-----  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~---~vi~~~~~~~~~~~~~~~~-----g~~~---~~~~~~~~~~~~~~-----  104 (220)
                      .++++||.|+ |++|..+++.+...|+   +|++++++.++.+++.+.+     +...   ..|..+.+.++++.     
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            4689999997 9999999876655565   9999999988776665543     3221   23555655554432     


Q ss_pred             --CCccEEEEcCCC
Q 027664          105 --GTMDGIIDTVSA  116 (220)
Q Consensus       105 --~~~d~v~d~~g~  116 (220)
                        +++|++++++|.
T Consensus       112 ~~g~iD~lVnnAG~  125 (287)
T 3rku_A          112 EFKDIDILVNNAGK  125 (287)
T ss_dssp             GGCSCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence              379999999984

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.39  E-value=0.00061  Score=52.00  Aligned_cols=96  Identities=17%  Similarity=0.160  Sum_probs=65.2

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC--CEEEcCCCHHHHHHhcCCccEEEEc
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA--DSFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~--~~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      .+.++.+||-+|+|. |..+..+++..|.+|++++.+++..+.+.+.+   |.  ...+...+..   ++.+.||+|+..
T Consensus        61 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~~~~fD~v~~~  136 (287)
T 1kpg_A           61 GLQPGMTLLDVGCGW-GATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE---QFDEPVDRIVSI  136 (287)
T ss_dssp             TCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG---GCCCCCSEEEEE
T ss_pred             CCCCcCEEEEECCcc-cHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh---hCCCCeeEEEEe
Confidence            367899999999975 88888888777999999999987666554432   22  1111122221   222679999854


Q ss_pred             -----CCC---cccHHHHHhccccCCEEEEeCC
Q 027664          114 -----VSA---VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 -----~g~---~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                           ++.   ...+..+.+.|+++|+++....
T Consensus       137 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          137 GAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence                 222   1246778899999999987654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.39  E-value=0.00074  Score=49.86  Aligned_cols=96  Identities=16%  Similarity=0.127  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccchHHHHHHcCC--CEEE---cCCCHHHHHHhcCCccEEEEc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGA--DSFL---VSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~~~g~--~~~~---~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      ++++++||-+|+|. |..+..+++..| .+|+.++.+++..+.+.+....  ...+   |..+........+.||+|+..
T Consensus        72 ~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (230)
T 1fbn_A           72 IKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe
Confidence            57899999999986 888889999887 5999999998766655443321  1111   111111101112479999966


Q ss_pred             CCCc---c-cHHHHHhccccCCEEEEe
Q 027664          114 VSAV---H-PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       114 ~g~~---~-~~~~~~~~l~~~G~~v~~  136 (220)
                      ...+   . .+..+.+.|+++|+++..
T Consensus       151 ~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          151 VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            5544   2 267788899999999886

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.39  E-value=0.00054  Score=52.78  Aligned_cols=76  Identities=26%  Similarity=0.351  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------ccchHHHHH---HcCCCE---EEcCCCHHHHH
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS------------PSKKSEAVE---RLGADS---FLVSRDQDEMQ  101 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~------------~~~~~~~~~---~~g~~~---~~~~~~~~~~~  101 (220)
                      -.|+++||.|+ +++|..+++.+...|++|++++++            .++.++..+   ..+...   ..|..+.+.++
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~  105 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ  105 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence            35789999997 899999999888889999999876            333333322   334322   23555655444


Q ss_pred             Hh-------cCCccEEEEcCCC
Q 027664          102 AA-------MGTMDGIIDTVSA  116 (220)
Q Consensus       102 ~~-------~~~~d~v~d~~g~  116 (220)
                      ++       .+++|++++++|.
T Consensus       106 ~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          106 AAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHhCCCCEEEECCCC
Confidence            33       2479999999874

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.39  E-value=0.0012  Score=49.79  Aligned_cols=75  Identities=20%  Similarity=0.333  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCcc---chHHHHHHcCCCEE--EcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLGADSF--LVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~~---~~~~~~~~~g~~~~--~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+   |++|..+++.+...|++|++++++++   ..+++.+..+....  .|..+.+.++++.       ++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999985   69999999887778999999998874   23333333342222  3555655444332       47


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        87 iD~lv~~Ag~   96 (261)
T 2wyu_A           87 LDYLVHAIAF   96 (261)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.39  E-value=0.001  Score=52.11  Aligned_cols=87  Identities=20%  Similarity=0.347  Sum_probs=63.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..+++.++.+|.+|++.+++.++ +.. +.+|...    .+   +.+.....|+|+.+++...   
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~----~~---l~~~l~~aDvVil~vp~~~~t~  219 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVE-RELNAEF----KP---LEDLLRESDFVVLAVPLTRETY  219 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-HHHCCEE----CC---HHHHHHHCSEEEECCCCCTTTT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhH-hhcCccc----CC---HHHHHhhCCEEEECCCCChHHH
Confidence            5679999999999999999999999999999988765 333 4566531    12   2233346799999987643   


Q ss_pred             -cH-HHHHhccccCCEEEEeC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g  137 (220)
                       .+ ......++++..++.++
T Consensus       220 ~~i~~~~~~~mk~~ailIn~s  240 (334)
T 2dbq_A          220 HLINEERLKLMKKTAILINIA  240 (334)
T ss_dssp             TCBCHHHHHHSCTTCEEEECS
T ss_pred             HhhCHHHHhcCCCCcEEEECC
Confidence             22 34567788888888776

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.38  E-value=0.00063  Score=51.83  Aligned_cols=76  Identities=17%  Similarity=0.291  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc------------cchHHHH---HHcCCCEE---EcCCCHHHHH
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP------------SKKSEAV---ERLGADSF---LVSRDQDEMQ  101 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~------------~~~~~~~---~~~g~~~~---~~~~~~~~~~  101 (220)
                      -.++++||.|+ |++|..+++.+...|++|+++++++            ++.++..   +..+....   .|..+.+.++
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   87 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE   87 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            35789999997 9999999998888999999999862            2222222   23343222   3555655443


Q ss_pred             Hh-------cCCccEEEEcCCC
Q 027664          102 AA-------MGTMDGIIDTVSA  116 (220)
Q Consensus       102 ~~-------~~~~d~v~d~~g~  116 (220)
                      ++       .+++|++++++|.
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~  109 (281)
T 3s55_A           88 SFVAEAEDTLGGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCC
Confidence            33       2489999999984

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.38  E-value=0.0003  Score=54.03  Aligned_cols=75  Identities=16%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCccchHHHHHHc----CCCEE---EcCCCHH--------------
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVERL----GADSF---LVSRDQD--------------   98 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~-~~~~~~~~~~~~~----g~~~~---~~~~~~~--------------   98 (220)
                      .++++||.|+ |++|..+++.+...|++|++++ ++.++.+.+.+.+    +....   .|..+.+              
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   87 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT   87 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccccc
Confidence            5688999997 9999999998888899999999 8876655554433    32211   2444433              


Q ss_pred             ---HHHHh-------cCCccEEEEcCCC
Q 027664           99 ---EMQAA-------MGTMDGIIDTVSA  116 (220)
Q Consensus        99 ---~~~~~-------~~~~d~v~d~~g~  116 (220)
                         .++++       .+++|++|+++|.
T Consensus        88 ~~~~v~~~~~~~~~~~g~iD~lvnnAg~  115 (291)
T 1e7w_A           88 LFTRCAELVAACYTHWGRCDVLVNNASS  115 (291)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             hHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence               33332       2479999999984

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.38  E-value=0.0008  Score=50.63  Aligned_cols=86  Identities=15%  Similarity=0.271  Sum_probs=62.6

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  123 (220)
                      .+|.|+|+|.+|...+..+...|.+|.+.++++++.+.+.+.+|...   ..+.+   +.....|+||.|+... .....
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~---~~~~~~D~Vi~~v~~~-~~~~v   76 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY---AMSHQ---DLIDQVDLVILGIKPQ-LFETV   76 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB---CSSHH---HHHHTCSEEEECSCGG-GHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEe---eCCHH---HHHhcCCEEEEEeCcH-hHHHH
Confidence            36899999999999998888888899999988887777766667542   22222   2223789999999844 56677


Q ss_pred             HhccccCCEEEEe
Q 027664          124 IGLLKSQGKLVLL  136 (220)
Q Consensus       124 ~~~l~~~G~~v~~  136 (220)
                      +..++++..++..
T Consensus        77 ~~~l~~~~~vv~~   89 (259)
T 2ahr_A           77 LKPLHFKQPIISM   89 (259)
T ss_dssp             HTTSCCCSCEEEC
T ss_pred             HHHhccCCEEEEe
Confidence            7777766655555

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=97.38  E-value=0.0011  Score=52.06  Aligned_cols=75  Identities=13%  Similarity=0.088  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc----hHHHHHHc------CCCEE-EcCCCHHHHHHhcCCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK----KSEAVERL------GADSF-LVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~----~~~~~~~~------g~~~~-~~~~~~~~~~~~~~~~d~  109 (220)
                      .+.+|||.|+ |.+|..+++.+...|.+|++++++...    ...+.+.+      ++..+ .|..+.+.+.+...++|+
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  105 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY  105 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCE
Confidence            4578999998 999999999888889999999987542    22222211      22222 355566667777779999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      ||.+++.
T Consensus       106 vih~A~~  112 (352)
T 1sb8_A          106 VLHQAAL  112 (352)
T ss_dssp             EEECCSC
T ss_pred             EEECCcc
Confidence            9999985

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.37  E-value=0.001  Score=49.75  Aligned_cols=75  Identities=15%  Similarity=0.114  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCe-EEEEeCCcc--chHHHHHHc-CCC---EEEcCCCH-HHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVK-VTVISTSPS--KKSEAVERL-GAD---SFLVSRDQ-DEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~-vi~~~~~~~--~~~~~~~~~-g~~---~~~~~~~~-~~~~~~-------~~  105 (220)
                      .++++||.|+ |++|..+++.+...|++ |++++++.+  ..+++.+.. +..   ...|..+. +.++++       .+
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   83 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence            4688999997 99999999988888996 888888763  333343332 211   11355544 433332       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++|+++|.
T Consensus        84 ~id~lv~~Ag~   94 (254)
T 1sby_A           84 TVDILINGAGI   94 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999999984

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.37  E-value=0.0062  Score=47.95  Aligned_cols=128  Identities=20%  Similarity=0.201  Sum_probs=78.6

Q ss_pred             CEEEEEccchhHH-HHHHHHHHC-CCeEEEE-eCCccchHHHHHHcCCCEEEcCCCHHHHHHhc--CCccEEEEcCCCcc
Q 027664           44 MHVGVVGLGGLGH-VAVKFAKAM-GVKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~g~~G~-~~~~la~~~-g~~vi~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~d~v~d~~g~~~  118 (220)
                      -+|.|+|+|.+|. ..+..++.. +++++.+ +++.++.+.+.+.+|....   .+   .+++.  ..+|+|+.|+....
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~---~~---~~~ll~~~~~D~V~i~tp~~~  101 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPV---EG---YPALLERDDVDAVYVPLPAVL  101 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEE---ES---HHHHHTCTTCSEEEECCCGGG
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCc---CC---HHHHhcCCCCCEEEECCCcHH
Confidence            4689999999998 566666555 7787744 5666667777777887543   22   23333  27999999999887


Q ss_pred             cHHHHHhccccCCEEEEeCCCCCCCCCCchh-------hhcCCeE-EEEEecCCHHHHHHHHHHHHcCCCc
Q 027664          119 PLMPLIGLLKSQGKLVLLGAPEKPLELPAFP-------LLTGRKI-VGGSLIGGLKETQEMIDFAAKHNIR  181 (220)
Q Consensus       119 ~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~i~~g~i~  181 (220)
                      ..+.+..++..|-. |++.   .+...+...       .-.++.. ..++..+....++.+.+++++|.+-
T Consensus       102 h~~~~~~al~aGk~-Vl~E---KP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG  168 (350)
T 3rc1_A          102 HAEWIDRALRAGKH-VLAE---KPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLDEGVIG  168 (350)
T ss_dssp             HHHHHHHHHHTTCE-EEEE---SSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHCCCc-EEEe---CCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHhcCCCC
Confidence            77788888877655 4442   233332221       1122332 3333333334466667777777664

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.37  E-value=0.00064  Score=52.73  Aligned_cols=92  Identities=15%  Similarity=0.180  Sum_probs=62.5

Q ss_pred             CEEEEEccchhHHHHHHHH-H-HCCCeEEEEeCC-ccc-hHHHHHHcCCCEEEcCCCHHHHHHhc--CCccEEEEcCCCc
Q 027664           44 MHVGVVGLGGLGHVAVKFA-K-AMGVKVTVISTS-PSK-KSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la-~-~~g~~vi~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~d~v~d~~g~~  117 (220)
                      -+|.|+|+|.+|...+..+ + ..+.+++.+... +++ ...+.+.+|....  ..+.+.+.+.+  .++|+||+|+|..
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~--~~~~e~ll~~~~~~~iDvV~~atp~~   82 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT--YAGVEGLIKLPEFADIDFVFDATSAS   82 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE--SSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcc--cCCHHHHHhccCCCCCcEEEECCChH
Confidence            4789999999999988877 4 346676655554 444 4556567886532  22223332322  3799999999977


Q ss_pred             ccHHHHHhcccc--CCEEEEeC
Q 027664          118 HPLMPLIGLLKS--QGKLVLLG  137 (220)
Q Consensus       118 ~~~~~~~~~l~~--~G~~v~~g  137 (220)
                      ...+.+..+++.  |.+++...
T Consensus        83 ~h~~~a~~al~a~~Gk~Vi~ek  104 (312)
T 1nvm_B           83 AHVQNEALLRQAKPGIRLIDLT  104 (312)
T ss_dssp             HHHHHHHHHHHHCTTCEEEECS
T ss_pred             HHHHHHHHHHHhCCCCEEEEcC
Confidence            667778888888  88877643

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.36  E-value=0.00048  Score=51.45  Aligned_cols=75  Identities=25%  Similarity=0.311  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc-cchHHHHH---HcCCCE---EEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVE---RLGADS---FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~-~~~~~~~~---~~g~~~---~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++.. ++.+.+.+   ..+.+.   ..|..+.+.++++.       ++
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4678999997 9999999998888999999887754 34333333   234322   23555555444332       48


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        83 id~lv~nAg~   92 (246)
T 3osu_A           83 LDVLVNNAGI   92 (246)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=97.36  E-value=0.00021  Score=54.09  Aligned_cols=70  Identities=20%  Similarity=0.203  Sum_probs=53.9

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      +++|||.|+ |.+|..+++.+...|.+|+++++++.+..    ..+... ..|..+.+.+.++..++|++|+++|.
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~   74 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----GPNEECVQCDLADANAVNAMVAGCDGIVHLGGI   74 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence            468999997 99999999988888999999999876432    112222 24566677788877899999999875

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.36  E-value=0.0011  Score=52.37  Aligned_cols=96  Identities=17%  Similarity=0.125  Sum_probs=63.9

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccch--HHHHHHc-CCCEE-Ec-CCCHHHHHHhcCCccEEEEcCCC
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK--SEAVERL-GADSF-LV-SRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~--~~~~~~~-g~~~~-~~-~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      +.+|+|.|+ |.+|..+++.+...|.+|++++++.++.  ..+ ... +++.+ .| ..+.+.+.+...++|+||.+.+.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l-~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL-QAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHH-HTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHH-hhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            467999997 9999999988877899999999887654  223 222 33322 35 55667777777789999987764


Q ss_pred             c--c---cHHHHHhcccc-C--CEEEEeCCC
Q 027664          117 V--H---PLMPLIGLLKS-Q--GKLVLLGAP  139 (220)
Q Consensus       117 ~--~---~~~~~~~~l~~-~--G~~v~~g~~  139 (220)
                      .  .   ....+++.++. +  ++++.++..
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence            2  1   11233444433 2  588877654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.36  E-value=0.00098  Score=50.77  Aligned_cols=76  Identities=11%  Similarity=0.194  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCc--cchHHHHHHcCCCEE--EcCCCHHHHHHh-------cCC
Q 027664           41 KPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSP--SKKSEAVERLGADSF--LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g--~~G~~~~~la~~~g~~vi~~~~~~--~~~~~~~~~~g~~~~--~~~~~~~~~~~~-------~~~  106 (220)
                      -.++++||.|+ |  ++|..+++.+...|++|++++++.  +..+++.+..+--..  .|..+.+.++++       .++
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            45789999985 4  499999988888899999999887  444555444442222  355565544333       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       104 id~li~nAg~  113 (280)
T 3nrc_A          104 LDAIVHSIAF  113 (280)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999985

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.36  E-value=0.00055  Score=51.64  Aligned_cols=75  Identities=15%  Similarity=0.136  Sum_probs=51.3

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCC---CeEEEEeCCccchHHHHHHc---CCC--E-EEcCCCHHHHHHhc------
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMG---VKVTVISTSPSKKSEAVERL---GAD--S-FLVSRDQDEMQAAM------  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g---~~vi~~~~~~~~~~~~~~~~---g~~--~-~~~~~~~~~~~~~~------  104 (220)
                      ..++++||.|+ |++|..+++.+...|   .+|++++++.++.+.+ +++   +..  . ..|..+.+.++++.      
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            45678999997 999999999888889   8999999987654433 222   221  1 13445544333322      


Q ss_pred             -C--CccEEEEcCCC
Q 027664          105 -G--TMDGIIDTVSA  116 (220)
Q Consensus       105 -~--~~d~v~d~~g~  116 (220)
                       +  ++|++|+++|.
T Consensus        98 ~g~~~id~li~~Ag~  112 (267)
T 1sny_A           98 TKDQGLNVLFNNAGI  112 (267)
T ss_dssp             HGGGCCSEEEECCCC
T ss_pred             cCCCCccEEEECCCc
Confidence             2  69999999984

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.36  E-value=0.00026  Score=52.90  Aligned_cols=67  Identities=16%  Similarity=0.269  Sum_probs=46.2

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhc----CCccEEEEcCCCc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM----GTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~d~v~d~~g~~  117 (220)
                      +++||.|+ |.+|..+++.+...|.+|++++++.++...       ....|..+.+.++++.    +++|++|+++|..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~   73 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA-------DLSTPGGRETAVAAVLDRCGGVLDGLVCCAGVG   73 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------CTTSHHHHHHHHHHHHHHHTTCCSEEEECCCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc-------cccCCcccHHHHHHHHHHcCCCccEEEECCCCC
Confidence            36899997 999999998888889999999988654321       1011222233343332    4899999998853

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.36  E-value=0.00048  Score=52.26  Aligned_cols=71  Identities=20%  Similarity=0.244  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC-EEEcCCCHHHHHHh-------cCCccEEE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~-------~~~~d~v~  111 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++++.+...    . ... ...|..+.+.++++       .+++|+++
T Consensus        12 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~----~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv   86 (269)
T 3vtz_A           12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV----N-VSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILV   86 (269)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT----T-SSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc----C-ceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            57899999997 89999999988888999999998865431    1 121 22456665544433       24899999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        87 ~nAg~   91 (269)
T 3vtz_A           87 NNAGI   91 (269)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99985

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.35  E-value=0.00083  Score=50.25  Aligned_cols=70  Identities=19%  Similarity=0.269  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHhc-------CCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAM-------GTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-------~~~d~v~d  112 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.+.     +..+... ..|..+.+.++++.       +++|++++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~   80 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ-----EQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN   80 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS-----SCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh-----hcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999997 999999999888899999999988652     1234322 23556655444332       47999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        81 ~Ag~   84 (250)
T 2fwm_X           81 AAGI   84 (250)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9985

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.35  E-value=0.0013  Score=50.92  Aligned_cols=89  Identities=22%  Similarity=0.236  Sum_probs=61.6

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  122 (220)
                      -.+|.|+|.|.+|...++.+...|.+|++.++++++.+.+. ..|+..   ..+.   .+.....|+||-|++.+.....
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~---~~~~---~~~~~~aDvvi~~vp~~~~~~~   93 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV-EHGASV---CESP---AEVIKKCKYTIAMLSDPCAALS   93 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-HTTCEE---CSSH---HHHHHHCSEEEECCSSHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HCCCeE---cCCH---HHHHHhCCEEEEEcCCHHHHHH
Confidence            35799999999999999998889999999999998877774 556532   1122   2222357899999887533444


Q ss_pred             HH-------hccccCCEEEEeCC
Q 027664          123 LI-------GLLKSQGKLVLLGA  138 (220)
Q Consensus       123 ~~-------~~l~~~G~~v~~g~  138 (220)
                      .+       ..++++..++..+.
T Consensus        94 v~~~~~~l~~~l~~g~~vv~~st  116 (310)
T 3doj_A           94 VVFDKGGVLEQICEGKGYIDMST  116 (310)
T ss_dssp             HHHSTTCGGGGCCTTCEEEECSC
T ss_pred             HHhCchhhhhccCCCCEEEECCC
Confidence            33       34556666666543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.35  E-value=0.00045  Score=52.55  Aligned_cols=94  Identities=15%  Similarity=0.193  Sum_probs=63.8

Q ss_pred             EEEEEcc-chhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCc---
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAV---  117 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~---  117 (220)
                      +|||.|+ |.+|..+++.+...  |.+|+++++++++...+ ...+...+ .|..+.+.+.+...++|+||.+++..   
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~   79 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQAL-AAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQ   79 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHH-HHTTCEEEECCTTCHHHHHHHTTTCSEEEECC------
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhh-hcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchH
Confidence            3799997 99999999888777  88999999987765544 23455433 35666777777778999999998852   


Q ss_pred             --ccHHHHHhcccc-C-CEEEEeCCC
Q 027664          118 --HPLMPLIGLLKS-Q-GKLVLLGAP  139 (220)
Q Consensus       118 --~~~~~~~~~l~~-~-G~~v~~g~~  139 (220)
                        .....+++.++. + ++++.++..
T Consensus        80 ~~~~~~~l~~a~~~~~~~~~v~~Ss~  105 (286)
T 2zcu_A           80 RAPQHRNVINAAKAAGVKFIAYTSLL  105 (286)
T ss_dssp             --CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCC
Confidence              123344444433 2 578776543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=97.35  E-value=0.00089  Score=52.80  Aligned_cols=89  Identities=18%  Similarity=0.245  Sum_probs=64.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..+++.++.+|.+|++.+++.. .+. ....|++.+   .+   +.++....|+|+-++....   
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~-~~~~g~~~~---~~---l~ell~~aDiV~l~~Plt~~t~  230 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS-KER-ARADGFAVA---ES---KDALFEQSDVLSVHLRLNDETR  230 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH-HHH-HHHTTCEEC---SS---HHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC-HHH-HHhcCceEe---CC---HHHHHhhCCEEEEeccCcHHHH
Confidence            578999999999999999999999999999988753 222 345676422   12   2333346799998886431   


Q ss_pred             -c-HHHHHhccccCCEEEEeCC
Q 027664          119 -P-LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~-~~~~~~~l~~~G~~v~~g~  138 (220)
                       . -...+..|+++..++.++.
T Consensus       231 ~li~~~~l~~mk~gailIN~aR  252 (352)
T 3gg9_A          231 SIITVADLTRMKPTALFVNTSR  252 (352)
T ss_dssp             TCBCHHHHTTSCTTCEEEECSC
T ss_pred             HhhCHHHHhhCCCCcEEEECCC
Confidence             1 2467788999999998873

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.35  E-value=0.0033  Score=48.76  Aligned_cols=94  Identities=15%  Similarity=0.217  Sum_probs=64.4

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~-~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      ....++.|+|+|.+|...++.+.. .|. +|.+.+++.++.+.+.+.++..... ..+   +.+...+.|+|+.|+....
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~-~~~---~~e~v~~aDiVi~atp~~~  208 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRV-CSS---VQEAVAGADVIITVTLATE  208 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEE-CSS---HHHHHTTCSEEEECCCCSS
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEE-eCC---HHHHHhcCCEEEEEeCCCC
Confidence            567789999999999988876554 587 8999999988888887776621111 122   3334457899999997532


Q ss_pred             c-HHHHHhccccCCEEEEeCCCC
Q 027664          119 P-LMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       119 ~-~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      . +..  ..++++-.++.+|...
T Consensus       209 ~v~~~--~~l~~g~~vi~~g~~~  229 (312)
T 2i99_A          209 PILFG--EWVKPGAHINAVGASR  229 (312)
T ss_dssp             CCBCG--GGSCTTCEEEECCCCS
T ss_pred             cccCH--HHcCCCcEEEeCCCCC
Confidence            1 211  5677777777776543

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.34  E-value=8.6e-05  Score=55.87  Aligned_cols=87  Identities=18%  Similarity=0.189  Sum_probs=58.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--  118 (220)
                      .+ +++|+|+|++|.+++..+...|+ +|+++.++.++.+++.+.++.   ...   +.+.+....+|+||+|++...  
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~---~~~~~~~~~aDiVInatp~gm~p  180 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSL---DQLDEVVKKAKSLFNTTSVGMKG  180 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEG---GGHHHHHHTCSEEEECSSTTTTS
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCH---HHHHhhhcCCCEEEECCCCCCCC
Confidence            46 89999999999999998888999 999999998765555333321   222   223333457999999986321  


Q ss_pred             ---cHHHHHhccccCCEEEEeC
Q 027664          119 ---PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       119 ---~~~~~~~~l~~~G~~v~~g  137 (220)
                         .+  ....++++..++.+-
T Consensus       181 ~~~~i--~~~~l~~~~~V~Div  200 (253)
T 3u62_A          181 EELPV--SDDSLKNLSLVYDVI  200 (253)
T ss_dssp             CCCSC--CHHHHTTCSEEEECS
T ss_pred             CCCCC--CHHHhCcCCEEEEee
Confidence               11  123456666666653

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.34  E-value=0.00095  Score=52.55  Aligned_cols=90  Identities=20%  Similarity=0.216  Sum_probs=63.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|.++.|+|.|.+|..+++.++.+|.+|++.+++.++.  ..+.+|++.+   .+   +.++....|+|+-++....   
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~g~~~~---~~---l~ell~~aDvV~l~~P~t~~t~  238 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG--VERALGLQRV---ST---LQDLLFHSDCVTLHCGLNEHNH  238 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT--HHHHHTCEEC---SS---HHHHHHHCSEEEECCCCCTTCT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh--hHhhcCCeec---CC---HHHHHhcCCEEEEcCCCCHHHH
Confidence            57899999999999999999999999999998876542  2245666422   12   2233335789888876431   


Q ss_pred             -cH-HHHHhccccCCEEEEeCCC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g~~  139 (220)
                       .+ ...+..|+++..++.++..
T Consensus       239 ~li~~~~l~~mk~gailIN~arg  261 (347)
T 1mx3_A          239 HLINDFTVKQMRQGAFLVNTARG  261 (347)
T ss_dssp             TSBSHHHHTTSCTTEEEEECSCT
T ss_pred             HHhHHHHHhcCCCCCEEEECCCC
Confidence             12 4567788888888877643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.34  E-value=0.00033  Score=50.34  Aligned_cols=98  Identities=15%  Similarity=0.172  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHHH---cCC--CEEEcCCCHHHHHHh-cCCccEEE
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVER---LGA--DSFLVSRDQDEMQAA-MGTMDGII  111 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~---~g~--~~~~~~~~~~~~~~~-~~~~d~v~  111 (220)
                      ++++++||-+|+|. |..+..+++..+  .+++.++.+++..+.+.+.   .|.  ..-+...+...+... .+.||+|+
T Consensus        20 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           20 VKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             CCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             CCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            68899999999875 888888888854  5999999998766555433   232  112222332222222 24799998


Q ss_pred             EcCCC---------------cccHHHHHhccccCCEEEEeCC
Q 027664          112 DTVSA---------------VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       112 d~~g~---------------~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      -..+-               ...+..+.+.|+++|+++....
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            55432               1257788899999999987753

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.34  E-value=0.0011  Score=51.27  Aligned_cols=92  Identities=12%  Similarity=0.184  Sum_probs=62.8

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc------cchHHH--HHHcCCCEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP------SKKSEA--VERLGADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~------~~~~~~--~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      ..+|+|.|+ |.+|..+++.+...|.+|++++++.      ++.+.+  .+..++..+ .|..+.+.+.+...++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            356999997 9999999998888899999999886      122211  123355433 466677777777789999999


Q ss_pred             cCCCcc--cHHHHHhccccC---CEEE
Q 027664          113 TVSAVH--PLMPLIGLLKSQ---GKLV  134 (220)
Q Consensus       113 ~~g~~~--~~~~~~~~l~~~---G~~v  134 (220)
                      +++...  ....+++.+...   ++++
T Consensus        84 ~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           84 ALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             CCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             CCCccchhhHHHHHHHHHHhCCccEEe
Confidence            998532  233445554443   4676

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.34  E-value=0.00074  Score=50.89  Aligned_cols=74  Identities=20%  Similarity=0.197  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHH-HHHH---cCCC---EEEcCCCHHHHHHhc-------CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSE-AVER---LGAD---SFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~-~~~~---~g~~---~~~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|+++.++.+...+ +.+.   .+..   ...|..+.+.++++.       ++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   85 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK   85 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4578999997 999999998888889999998777554322 2222   1211   123555655444332       48


Q ss_pred             ccEEEEcCC
Q 027664          107 MDGIIDTVS  115 (220)
Q Consensus       107 ~d~v~d~~g  115 (220)
                      +|++|+++|
T Consensus        86 id~lv~~Ag   94 (264)
T 3i4f_A           86 IDFLINNAG   94 (264)
T ss_dssp             CCEEECCCC
T ss_pred             CCEEEECCc
Confidence            999999999

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.34  E-value=0.00035  Score=54.67  Aligned_cols=75  Identities=16%  Similarity=0.089  Sum_probs=52.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCccchHHHHHHc----CCCE---EEcCCCHH--------------
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVERL----GADS---FLVSRDQD--------------   98 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~-~~~~~~~~~~~~~----g~~~---~~~~~~~~--------------   98 (220)
                      .++++||.|+ |++|..+++.+...|++|++++ ++.++.+.+.+.+    +...   ..|..+.+              
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~  124 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVT  124 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCBC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccccc
Confidence            5688999997 9999999998888999999999 8876655554432    3221   12444433              


Q ss_pred             ---HHHHh-------cCCccEEEEcCCC
Q 027664           99 ---EMQAA-------MGTMDGIIDTVSA  116 (220)
Q Consensus        99 ---~~~~~-------~~~~d~v~d~~g~  116 (220)
                         .++++       .+++|++|+++|.
T Consensus       125 ~~~~v~~~~~~~~~~~g~iD~lVnnAG~  152 (328)
T 2qhx_A          125 LFTRCAELVAACYTHWGRCDVLVNNASS  152 (328)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             cHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence               33332       2479999999984

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.34  E-value=0.00072  Score=50.22  Aligned_cols=71  Identities=21%  Similarity=0.321  Sum_probs=49.3

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCH---HHHHH---hcCCccEEEEcC
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQ---DEMQA---AMGTMDGIIDTV  114 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~---~~~~~---~~~~~d~v~d~~  114 (220)
                      ++++||.|+ |++|..+++.+...|++|++++++.++   ..+.++...+ .|..+.   ..+++   ..+++|++++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~A   78 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAA   78 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEEECC
Confidence            578999997 999999999888889999999998764   2234453222 233331   11222   224799999998


Q ss_pred             CC
Q 027664          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      |.
T Consensus        79 g~   80 (239)
T 2ekp_A           79 AV   80 (239)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.34  E-value=0.0015  Score=49.96  Aligned_cols=93  Identities=23%  Similarity=0.198  Sum_probs=59.6

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc------------CCCEE-Ec-----CCCHHHHHHhcC
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL------------GADSF-LV-----SRDQDEMQAAMG  105 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~------------g~~~~-~~-----~~~~~~~~~~~~  105 (220)
                      ++|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+..            +.+.. .+     ......+.+...
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            5799999999999999999999999999999988766654331            11100 00     000011223345


Q ss_pred             CccEEEEcCCCcc-----cHHHHHhccccCCEEEEe
Q 027664          106 TMDGIIDTVSAVH-----PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       106 ~~d~v~d~~g~~~-----~~~~~~~~l~~~G~~v~~  136 (220)
                      +.|+||+|+....     .+..+...++++..++..
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~  120 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATN  120 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEEC
Confidence            7999999999751     234444556666655543

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=97.33  E-value=0.00098  Score=51.92  Aligned_cols=89  Identities=15%  Similarity=0.173  Sum_probs=64.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeC-CccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~--  118 (220)
                      .|.+|.|+|.|.+|..+++.++.+|.+|++.++ +.++ .. .+.+|+.. .  .+   +.+.....|+|+-++....  
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~g~~~-~--~~---l~ell~~aDvVil~~p~~~~t  216 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SD-EASYQATF-H--DS---LDSLLSVSQFFSLNAPSTPET  216 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HH-HHHHTCEE-C--SS---HHHHHHHCSEEEECCCCCTTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hh-hhhcCcEE-c--CC---HHHHHhhCCEEEEeccCchHH
Confidence            678999999999999999999999999999998 7654 32 34567642 1  12   2233346799999987532  


Q ss_pred             --cH-HHHHhccccCCEEEEeCC
Q 027664          119 --PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 --~~-~~~~~~l~~~G~~v~~g~  138 (220)
                        .+ ...+..++++..++.++.
T Consensus       217 ~~~i~~~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          217 RYFFNKATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             TTCBSHHHHTTSCTTEEEEECSC
T ss_pred             HhhcCHHHHhhCCCCcEEEECCC
Confidence              22 346678888888888765

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.33  E-value=0.00081  Score=51.68  Aligned_cols=87  Identities=21%  Similarity=0.278  Sum_probs=60.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLI  124 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~  124 (220)
                      +|.|+|+|.+|...+..+...|.+|++.++++++.+.+. +.|...   ..+.+   +.....|+||.|++.+......+
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~---~~~~~---~~~~~~D~vi~~v~~~~~~~~~~   79 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGAET---ASTAK---AIAEQCDVIITMLPNSPHVKEVA   79 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEE---CSSHH---HHHHHCSEEEECCSSHHHHHHHH
T ss_pred             eEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HCCCee---cCCHH---HHHhCCCEEEEECCCHHHHHHHH
Confidence            799999999999999888888999999998887776664 345431   22222   22235899999998654444444


Q ss_pred             -------hccccCCEEEEeCC
Q 027664          125 -------GLLKSQGKLVLLGA  138 (220)
Q Consensus       125 -------~~l~~~G~~v~~g~  138 (220)
                             ..++++..++.++.
T Consensus        80 ~~~~~l~~~l~~~~~vv~~s~  100 (299)
T 1vpd_A           80 LGENGIIEGAKPGTVLIDMSS  100 (299)
T ss_dssp             HSTTCHHHHCCTTCEEEECSC
T ss_pred             hCcchHhhcCCCCCEEEECCC
Confidence                   45666777766643

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.33  E-value=0.0013  Score=50.81  Aligned_cols=68  Identities=16%  Similarity=0.246  Sum_probs=51.4

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+|||.|+ |.+|..+++.+...|.+|+++++++.+.. + +  +.+.+ .|.. .+.+.+...++|+||.+++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~-~--~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-I-N--DYEYRVSDYT-LEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-C-C--ceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence            68999997 99999999998888999999999854333 3 2  44333 3555 66777777799999999885

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=97.33  E-value=0.00072  Score=52.89  Aligned_cols=89  Identities=17%  Similarity=0.235  Sum_probs=64.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..+++.++.+|.+|++.+++..+.+.. ..+|+..    .+   +.++....|+|+-++....   
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~----~~---l~ell~~aDvV~l~~P~t~~t~  215 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTE-QRLGLRQ----VA---CSELFASSDFILLALPLNADTL  215 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHH-HHHTEEE----CC---HHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHH-HhcCcee----CC---HHHHHhhCCEEEEcCCCCHHHH
Confidence            57899999999999999999999999999999886444333 4556532    12   2333345799998887421   


Q ss_pred             -cH-HHHHhccccCCEEEEeCC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g~  138 (220)
                       .+ ...+..|+++..++.++.
T Consensus       216 ~li~~~~l~~mk~gailIN~ar  237 (330)
T 4e5n_A          216 HLVNAELLALVRPGALLVNPCR  237 (330)
T ss_dssp             TCBCHHHHTTSCTTEEEEECSC
T ss_pred             HHhCHHHHhhCCCCcEEEECCC
Confidence             12 467788888888888864

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.33  E-value=0.00073  Score=52.61  Aligned_cols=75  Identities=24%  Similarity=0.296  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC---------CccchHHHHHH---cCCCEEEcCCCHHHHHH----h-
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST---------SPSKKSEAVER---LGADSFLVSRDQDEMQA----A-  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~---------~~~~~~~~~~~---~g~~~~~~~~~~~~~~~----~-  103 (220)
                      .|+++||.|+ |++|..+++.+...|++|++++.         +.++.+...+.   .+...+.|..+.+.+++    + 
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~   87 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   87 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence            5788999997 99999999988888999998754         34444333332   34444566666543322    2 


Q ss_pred             --cCCccEEEEcCCC
Q 027664          104 --MGTMDGIIDTVSA  116 (220)
Q Consensus       104 --~~~~d~v~d~~g~  116 (220)
                        .+++|++|+++|.
T Consensus        88 ~~~g~iD~lVnnAG~  102 (319)
T 1gz6_A           88 DTFGRIDVVVNNAGI  102 (319)
T ss_dssp             HHTSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence              2479999999984

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=97.32  E-value=0.00061  Score=53.64  Aligned_cols=75  Identities=21%  Similarity=0.197  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCCEE-EcCCCHHHHHHhcC--CccEEEEc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADSF-LVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~~~-~~~~~~~~~~~~~~--~~d~v~d~  113 (220)
                      .+.+|||.|+ |.+|..+++.+...|.+|++++++..+...+.+.+    +...+ .|..+.+.+.++..  ++|+||.+
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   87 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   87 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence            3578999997 99999999988888999999998876543333322    22222 35556666655544  58999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        88 A~~   90 (357)
T 1rkx_A           88 AAQ   90 (357)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            984

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.32  E-value=0.00064  Score=53.60  Aligned_cols=91  Identities=19%  Similarity=0.318  Sum_probs=63.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc-
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH-  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~-~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-  118 (220)
                      -.|.++.|+|.|.+|..+++.++ .+|.+|++.+++.++.+.. +.+|...+   .+.   .++....|+|+.++.... 
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~-~~~g~~~~---~~l---~ell~~aDvVil~vp~~~~  233 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETE-KALGAERV---DSL---EELARRSDCVSVSVPYMKL  233 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH-HHHTCEEC---SSH---HHHHHHCSEEEECCCCSGG
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhH-hhcCcEEe---CCH---HHHhccCCEEEEeCCCChH
Confidence            35789999999999999999999 9999999999887655444 44565422   122   222335799998887532 


Q ss_pred             ---cH-HHHHhccccCCEEEEeCC
Q 027664          119 ---PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 ---~~-~~~~~~l~~~G~~v~~g~  138 (220)
                         .+ ...+..++++..++.++.
T Consensus       234 t~~li~~~~l~~mk~gailin~sr  257 (348)
T 2w2k_A          234 THHLIDEAFFAAMKPGSRIVNTAR  257 (348)
T ss_dssp             GTTCBCHHHHHHSCTTEEEEECSC
T ss_pred             HHHHhhHHHHhcCCCCCEEEECCC
Confidence               12 345667777777776654

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.32  E-value=0.0015  Score=49.66  Aligned_cols=98  Identities=14%  Similarity=0.091  Sum_probs=66.5

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEE
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      .++...+ +..+.+++|+|+|++|.+++..+...|+ +|+++.++.++.+.+++.++.+.  .. +..     ...+|+|
T Consensus       109 ~~l~~~~-~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~--~~-~~~-----~~~~Div  179 (271)
T 1npy_A          109 KLIEKYH-LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY--IN-SLE-----NQQADIL  179 (271)
T ss_dssp             HHHHHTT-CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE--ES-CCT-----TCCCSEE
T ss_pred             HHHHHhC-CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCcc--ch-hhh-----cccCCEE
Confidence            3444433 3467889999999999999988888998 89999999888778877777521  11 110     2479999


Q ss_pred             EEcCCCcccH-------HHHHhccccCCEEEEeCC
Q 027664          111 IDTVSAVHPL-------MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       111 ~d~~g~~~~~-------~~~~~~l~~~G~~v~~g~  138 (220)
                      ++|++.....       ......+.++..++.+-.
T Consensus       180 InaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY  214 (271)
T 1npy_A          180 VNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVA  214 (271)
T ss_dssp             EECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCC
T ss_pred             EECCCCCccCccccCCCCCCHHHcCCCCEEEEeec
Confidence            9999864211       111234566666666643

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.30  E-value=0.0011  Score=51.46  Aligned_cols=98  Identities=22%  Similarity=0.170  Sum_probs=65.8

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHHH---cCCCEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVER---LGADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .++++++||.+|+|. |..+..+++..+  .+|+.++.+++..+.+.+.   .|.+.+ +...+........+.||+|+.
T Consensus        72 ~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~  150 (317)
T 1dl5_A           72 GLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFV  150 (317)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred             CCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEE
Confidence            468999999999986 888888887743  4799999998776555433   343211 212221111011247999997


Q ss_pred             cCCCcccHHHHHhccccCCEEEEeC
Q 027664          113 TVSAVHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g~~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      ...-....+.+.+.|+++|+++..-
T Consensus       151 ~~~~~~~~~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          151 TVGVDEVPETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             CSBBSCCCHHHHHHEEEEEEEEEEB
T ss_pred             cCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            7655545578889999999998764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.30  E-value=0.00065  Score=51.02  Aligned_cols=77  Identities=22%  Similarity=0.371  Sum_probs=48.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc-------------------cchHHHHHH---cCC-CEE--EcC-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP-------------------SKKSEAVER---LGA-DSF--LVS-   94 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~-------------------~~~~~~~~~---~g~-~~~--~~~-   94 (220)
                      .+.+|+|+|+|++|..++..+...|+ ++++++...                   .|.+.+++.   +.. ..+  ++. 
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  106 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR  106 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            35789999999999999999999999 777776542                   222222222   221 111  111 


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCcc
Q 027664           95 RDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        95 ~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      -+.+.+.++..++|+|++|+.+..
T Consensus       107 ~~~~~~~~~~~~~DvVi~~~d~~~  130 (251)
T 1zud_1          107 LTGEALKDAVARADVVLDCTDNMA  130 (251)
T ss_dssp             CCHHHHHHHHHHCSEEEECCSSHH
T ss_pred             CCHHHHHHHHhcCCEEEECCCCHH
Confidence            123344455557999999998764

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.29  E-value=0.0011  Score=51.76  Aligned_cols=75  Identities=17%  Similarity=0.204  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc-----cchHHHH---HHcCCCE---EEcCCCHHHHHHhc-----
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-----SKKSEAV---ERLGADS---FLVSRDQDEMQAAM-----  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~-----~~~~~~~---~~~g~~~---~~~~~~~~~~~~~~-----  104 (220)
                      .++++||.|+ |++|..+++.+...|++|+++.++.     ++.+.+.   +..+...   ..|..+.+.+.+..     
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            4678999997 9999999998888999999987752     2222222   2233321   23555654443322     


Q ss_pred             --CCccEEEEcCCC
Q 027664          105 --GTMDGIIDTVSA  116 (220)
Q Consensus       105 --~~~d~v~d~~g~  116 (220)
                        +++|++++++|.
T Consensus        84 ~~g~iD~lVnnAG~   97 (324)
T 3u9l_A           84 EDGRIDVLIHNAGH   97 (324)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence              489999999984

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.29  E-value=0.0013  Score=51.04  Aligned_cols=76  Identities=24%  Similarity=0.316  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------ccchHHHH---HHcCCCEE---EcCCCHHHHH
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS------------PSKKSEAV---ERLGADSF---LVSRDQDEMQ  101 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~------------~~~~~~~~---~~~g~~~~---~~~~~~~~~~  101 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++            .++.++..   +..+....   .|..+.+.++
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  123 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ  123 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            35789999997 999999999888889999998775            22333222   23343222   3555655444


Q ss_pred             Hh-------cCCccEEEEcCCC
Q 027664          102 AA-------MGTMDGIIDTVSA  116 (220)
Q Consensus       102 ~~-------~~~~d~v~d~~g~  116 (220)
                      ++       .+++|++|+++|.
T Consensus       124 ~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          124 AVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence            33       2479999999984

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.29  E-value=0.0017  Score=50.12  Aligned_cols=89  Identities=20%  Similarity=0.313  Sum_probs=61.6

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  123 (220)
                      .+|.|+|.|.+|...+..+...|.+|++.++++++.+.+. +.|...... +    ..+.....|+||-|+..+......
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~~~-~----~~e~~~~aDvvi~~vp~~~~~~~v   81 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLL-AEGACGAAA-S----AREFAGVVDALVILVVNAAQVRQV   81 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSEEES-S----STTTTTTCSEEEECCSSHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH-HcCCccccC-C----HHHHHhcCCEEEEECCCHHHHHHH
Confidence            5799999999999999988888999999999988777764 456654111 1    112234679999999875444444


Q ss_pred             H-------hccccCCEEEEeCC
Q 027664          124 I-------GLLKSQGKLVLLGA  138 (220)
Q Consensus       124 ~-------~~l~~~G~~v~~g~  138 (220)
                      +       ..++++..++..+.
T Consensus        82 ~~~~~~l~~~l~~g~ivv~~st  103 (303)
T 3g0o_A           82 LFGEDGVAHLMKPGSAVMVSST  103 (303)
T ss_dssp             HC--CCCGGGSCTTCEEEECSC
T ss_pred             HhChhhHHhhCCCCCEEEecCC
Confidence            3       44556666665543

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=97.29  E-value=0.00085  Score=53.40  Aligned_cols=74  Identities=9%  Similarity=0.112  Sum_probs=54.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+.+|||.|+ |.+|..+++.+...|.+|++++++..+.... ...+...+ .|..+.+.+.+...++|+||.+++.
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-DMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-GGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh-ccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            3578999998 9999999988888899999999886543222 11233322 3556666677777799999999884

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.29  E-value=0.00031  Score=52.51  Aligned_cols=70  Identities=21%  Similarity=0.234  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHh-------cCCccEEEEc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA-------MGTMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~d~v~d~  113 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.   +  ...|..+.+.++++       .+++|+++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~---~--~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~   88 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF---G--VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   88 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE---E--EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhc---C--eeccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            5688999997 99999999988888999999998876543321   1  33566665544333       2479999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        89 Ag~   91 (247)
T 1uzm_A           89 AGL   91 (247)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            885

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.29  E-value=0.00047  Score=53.70  Aligned_cols=76  Identities=24%  Similarity=0.330  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC----------ccchHHHHHH---cCCCEE---EcCCCHHHHHHh
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS----------PSKKSEAVER---LGADSF---LVSRDQDEMQAA  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~----------~~~~~~~~~~---~g~~~~---~~~~~~~~~~~~  103 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++          .++.+...+.   .+....   .|..+.+.++++
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            45789999997 999999998888889999999876          4444444333   343222   244454444332


Q ss_pred             -------cCCccEEEEcCCC
Q 027664          104 -------MGTMDGIIDTVSA  116 (220)
Q Consensus       104 -------~~~~d~v~d~~g~  116 (220)
                             .+++|++|+++|.
T Consensus       105 ~~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A          105 IQTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCC
Confidence                   2489999999985

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.28  E-value=0.001  Score=52.05  Aligned_cols=86  Identities=22%  Similarity=0.296  Sum_probs=59.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..+++.++.+|.+|++.+++.++ +.. ..+|+..    .+.   .+.....|+|+.+++...   
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~----~~l---~e~l~~aDiVil~vp~~~~t~  215 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVE-KELKARY----MDI---DELLEKSDIVILALPLTRDTY  215 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHH-HHHTEEE----CCH---HHHHHHCSEEEECCCCCTTTT
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhh-hhcCcee----cCH---HHHHhhCCEEEEcCCCChHHH
Confidence            5789999999999999999999999999999988764 333 4455421    122   222335788888887641   


Q ss_pred             -cH-HHHHhccccCCEEEEeC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g  137 (220)
                       .+ ...+..++++ .++.++
T Consensus       216 ~~i~~~~~~~mk~g-ilin~s  235 (333)
T 2d0i_A          216 HIINEERVKKLEGK-YLVNIG  235 (333)
T ss_dssp             TSBCHHHHHHTBTC-EEEECS
T ss_pred             HHhCHHHHhhCCCC-EEEECC
Confidence             12 2345667777 666655

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.28  E-value=0.00036  Score=54.48  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-CCCE-EEcCCCHHHHHHhcCC--ccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-GADS-FLVSRDQDEMQAAMGT--MDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~--~d~v~d~~g~  116 (220)
                      .+.+|||.|+ |.+|..+++.+...|.+|++++++........+.+ ++.. ..|..+.+.+.++..+  +|+||+++|.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~   99 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS   99 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECcee
Confidence            4678999997 99999999888888999999998754322111111 2221 2355566666665544  9999999985


Q ss_pred             c
Q 027664          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      .
T Consensus       100 ~  100 (333)
T 2q1w_A          100 Y  100 (333)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.27  E-value=0.001  Score=52.03  Aligned_cols=103  Identities=18%  Similarity=0.181  Sum_probs=65.5

Q ss_pred             HHhhcCCCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHHHcC---------------CCEEEcCCC
Q 027664           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERLG---------------ADSFLVSRD   96 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~~g---------------~~~~~~~~~   96 (220)
                      +... .+.++++||-+|+|. |..+..+++..|  .+|+.++.++...+.+.+.+.               ....+...+
T Consensus        98 l~~l-~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d  175 (336)
T 2b25_A           98 LSMM-DINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  175 (336)
T ss_dssp             HHHH-TCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHhc-CCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence            3344 378999999999986 888888888766  589999999876655543321               111111112


Q ss_pred             -HHHHHHhc-CCccEEEEcCCCc-ccHHHHHhccccCCEEEEeCC
Q 027664           97 -QDEMQAAM-GTMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus        97 -~~~~~~~~-~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g~  138 (220)
                       .+....+. +.||+|+-....+ ..+..+.+.|+++|+++....
T Consensus       176 ~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          176 ISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             TTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             hHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence             11111222 2699988655443 347889999999999997654

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.27  E-value=0.00039  Score=50.27  Aligned_cols=125  Identities=18%  Similarity=0.204  Sum_probs=70.3

Q ss_pred             cccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHH
Q 027664            4 DEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA   82 (220)
Q Consensus         4 ~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~   82 (220)
                      +....+.+++.+++..+. .+ ........+...  ++++.+||-+|+|. |..+..+++. +. ++++++.++...+.+
T Consensus        26 ~~~~~~~~~~~~~f~~~~-~~-~~~~~~~~l~~~--~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a   99 (205)
T 3grz_A           26 KDQEIIRLDPGLAFGTGN-HQ-TTQLAMLGIERA--MVKPLTVADVGTGS-GILAIAAHKL-GAKSVLATDISDESMTAA   99 (205)
T ss_dssp             TTCEEEEESCC-----CC-HH-HHHHHHHHHHHH--CSSCCEEEEETCTT-SHHHHHHHHT-TCSEEEEEESCHHHHHHH
T ss_pred             CCceeEEecCCcccCCCC-Cc-cHHHHHHHHHHh--ccCCCEEEEECCCC-CHHHHHHHHC-CCCEEEEEECCHHHHHHH
Confidence            445566667766665542 11 111112222222  47889999999976 7777777764 65 999999998766555


Q ss_pred             HHH---cCCC--EEEcCCCHHHHHHhcCCccEEEEcCCCc---ccHHHHHhccccCCEEEEeC
Q 027664           83 VER---LGAD--SFLVSRDQDEMQAAMGTMDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus        83 ~~~---~g~~--~~~~~~~~~~~~~~~~~~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g  137 (220)
                      .+.   .+..  .++..+-.+   ...+.||+|+-.....   ..+..+.+.|+++|+++..+
T Consensus       100 ~~~~~~~~~~~v~~~~~d~~~---~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  159 (205)
T 3grz_A          100 EENAALNGIYDIALQKTSLLA---DVDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSG  159 (205)
T ss_dssp             HHHHHHTTCCCCEEEESSTTT---TCCSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEE
T ss_pred             HHHHHHcCCCceEEEeccccc---cCCCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            433   2332  222211111   1224799998654332   12566778899999998853

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.26  E-value=0.00088  Score=50.70  Aligned_cols=76  Identities=20%  Similarity=0.237  Sum_probs=50.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-ccchHHHHHH---cCC--C-EEEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVER---LGA--D-SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~-~~~~~~~~~~---~g~--~-~~~~~~~~~~~~~~-------~~  105 (220)
                      ..++++||.|+ |++|..+++.+...|++|+++++. .++.+...+.   .+.  . ...|..+.+.++++       .+
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45688999997 999999999888889999998844 4333333222   232  1 12355665544333       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++|+++|.
T Consensus       103 ~id~li~nAg~  113 (269)
T 3gk3_A          103 KVDVLINNAGI  113 (269)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999984

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=97.26  E-value=0.0052  Score=48.65  Aligned_cols=87  Identities=18%  Similarity=0.341  Sum_probs=64.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..+++.++.+|.+|++.+++.. .+.+ ...|+..    .+   +.++....|+|+-++....   
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~-~~~g~~~----~~---l~ell~~aDvV~l~~Plt~~T~  245 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLP-RSML-EENGVEP----AS---LEDVLTKSDFIFVVAAVTSENK  245 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSC-HHHH-HHTTCEE----CC---HHHHHHSCSEEEECSCSSCC--
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCC-HHHH-hhcCeee----CC---HHHHHhcCCEEEEcCcCCHHHH
Confidence            478999999999999999999999999999988753 3333 4566542    12   3344457899988876431   


Q ss_pred             -cH-HHHHhccccCCEEEEeC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g  137 (220)
                       .+ ...+..|++++.++.++
T Consensus       246 ~li~~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          246 RFLGAEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             -CCCHHHHHTSCTTCEEEECS
T ss_pred             hhcCHHHHhcCCCCcEEEECc
Confidence             12 46678889999998887

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.26  E-value=0.00079  Score=50.58  Aligned_cols=69  Identities=19%  Similarity=0.156  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC-EEEcCCCHHHHHHh-------cCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.      +. ...|..+.+.++++       .+++|++++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~------~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~   93 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG------FLAVKCDITDTEQVEQAYKEIEETHGPVEVLIA   93 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT------SEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhcc------ceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999997 999999999888889999999988765432      21 12355665544332       236899999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        94 nAg~   97 (253)
T 2nm0_A           94 NAGV   97 (253)
T ss_dssp             ECSC
T ss_pred             CCCC
Confidence            9874

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.25  E-value=0.00088  Score=50.22  Aligned_cols=76  Identities=21%  Similarity=0.246  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCccchHHHHH---HcCCCE---EEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~-~~~~~~~~~~~---~~g~~~---~~~~~~~~~~~~~-------~~  105 (220)
                      .+++++||.|+ |++|..+++.+...|++|++++ ++.++.....+   ..+.+.   ..|..+.+.++++       .+
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   90 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEVG   90 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            57788999997 9999999988888899999888 44444443332   233321   2345555443332       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus        91 ~id~lv~~Ag~  101 (256)
T 3ezl_A           91 EIDVLVNNAGI  101 (256)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.25  E-value=0.0086  Score=47.16  Aligned_cols=132  Identities=16%  Similarity=0.075  Sum_probs=82.3

Q ss_pred             CEEEEEccchhHHHHHHHHHHC--CCeEEEE-eCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAM--GVKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~--g~~vi~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      -+|.|+|+|.+|...+..++..  +++++.+ ++++++.+.+.+.+|+ ..+  .+.+.+.+ ...+|+|+.|+......
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~-~~~--~~~~~ll~-~~~~D~V~i~tp~~~h~   89 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGA-RGH--ASLTDMLA-QTDADIVILTTPSGLHP   89 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCC-EEE--SCHHHHHH-HCCCSEEEECSCGGGHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCC-cee--CCHHHHhc-CCCCCEEEECCCcHHHH
Confidence            4689999999998888776665  6787744 5556666777777886 332  33332221 13799999999988677


Q ss_pred             HHHHhccccCCEEEEeCCCCCCCCCCchh---h----hcCCe-EEEEEecCCHHHHHHHHHHHHcCCCccc
Q 027664          121 MPLIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTGRK-IVGGSLIGGLKETQEMIDFAAKHNIRAD  183 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~~-~~~~~~~~~~~~~~~~~~~i~~g~i~~~  183 (220)
                      +.+..++..|..++ +   ..+...+...   +    -.++. .+.++.......++.+.+++++|.+-..
T Consensus        90 ~~~~~al~~gk~v~-~---EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i  156 (354)
T 3q2i_A           90 TQSIECSEAGFHVM-T---EKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQEKRFGRI  156 (354)
T ss_dssp             HHHHHHHHTTCEEE-E---CSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTTCSE
T ss_pred             HHHHHHHHCCCCEE-E---eCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHhcCCCCce
Confidence            77788887765544 4   2233333221   1    11223 2344443333567788888888887643

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.24  E-value=0.00054  Score=53.06  Aligned_cols=100  Identities=18%  Similarity=0.171  Sum_probs=65.5

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCHHHHHHhcCCccEEEE
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      ..++++++||-+|+|. |..+..+++..|++|++++.+++..+.+.+.   .|..  .-+...+...+.-..+.||+|+.
T Consensus       113 ~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  191 (312)
T 3vc1_A          113 GQAGPDDTLVDAGCGR-GGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWN  191 (312)
T ss_dssp             CCCCTTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEE
T ss_pred             ccCCCCCEEEEecCCC-CHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEE
Confidence            3367899999999974 8888888887789999999998766555332   3321  11111121111101137999975


Q ss_pred             c-----CCCcccHHHHHhccccCCEEEEeCC
Q 027664          113 T-----VSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~-----~g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      .     .+....+..+.+.|++||+++....
T Consensus       192 ~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          192 NESTMYVDLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             ESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            3     2223357788899999999998754

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.24  E-value=0.0012  Score=50.84  Aligned_cols=93  Identities=16%  Similarity=0.236  Sum_probs=61.3

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc------hHHH--HHHcCCCEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK------KSEA--VERLGADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~------~~~~--~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      ..+|+|.|+ |.+|..+++.+...|.+|++++++...      ...+  .+..+++.+ .|..+.+.+.+...++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            356999997 999999999888889999999987432      1111  123355433 355666667766678999999


Q ss_pred             cCCCcc--cHHHHHhccccC---CEEEE
Q 027664          113 TVSAVH--PLMPLIGLLKSQ---GKLVL  135 (220)
Q Consensus       113 ~~g~~~--~~~~~~~~l~~~---G~~v~  135 (220)
                      +++...  ....+++.++..   ++++.
T Consensus        84 ~a~~~~~~~~~~l~~aa~~~g~v~~~v~  111 (308)
T 1qyc_A           84 TVGSLQIESQVNIIKAIKEVGTVKRFFP  111 (308)
T ss_dssp             CCCGGGSGGGHHHHHHHHHHCCCSEEEC
T ss_pred             CCcchhhhhHHHHHHHHHhcCCCceEee
Confidence            998642  223344444332   46763

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.24  E-value=0.0021  Score=49.93  Aligned_cols=90  Identities=20%  Similarity=0.128  Sum_probs=63.2

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcCCC-EEEcCCCHHHHHH-hcCCccEEEEcCCCccc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQA-AMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-~~~~~d~v~d~~g~~~~  119 (220)
                      .+|.|+|.|.+|...++.++..|.  +|++.++++++.+.+ .++|.. .....     ..+ .....|+||-|+.....
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a-~~~G~~~~~~~~-----~~~~~~~~aDvVilavp~~~~  107 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGTTS-----IAKVEDFSPDFVMLSSPVRTF  107 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEESC-----TTGGGGGCCSEEEECSCGGGH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHCCCcchhcCC-----HHHHhhccCCEEEEeCCHHHH
Confidence            689999999999999999999998  999999998777666 466752 22211     112 33578999999987532


Q ss_pred             ---HHHHHhccccCCEEEEeCCC
Q 027664          120 ---LMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       120 ---~~~~~~~l~~~G~~v~~g~~  139 (220)
                         +..+...++++..++.++..
T Consensus       108 ~~vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          108 REIAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             HHHHHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHHHHhhccCCCcEEEECCCC
Confidence               23344556667777666543

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.24  E-value=0.00049  Score=51.90  Aligned_cols=71  Identities=14%  Similarity=0.188  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHhc-------CCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAM-------GTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-------~~~d~v~d  112 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++...    ..+.. ..|..+.+.++++.       +++|++++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~  102 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD----PDIHTVAGDISKPETADRIVREGIERFGRIDSLVN  102 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSS----TTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----CceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            5789999997 999999999888889999999988754321    12211 23555655444332       48999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus       103 nAg~  106 (260)
T 3un1_A          103 NAGV  106 (260)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.24  E-value=0.0018  Score=49.42  Aligned_cols=75  Identities=13%  Similarity=0.212  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCcc---chHHHHHHcC-CCE-EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLG-ADS-FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~~---~~~~~~~~~g-~~~-~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+   |++|..+++.+...|++|++++++.+   ..+++.+..+ ... ..|..+.+.++++       .++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5788999985   69999999888888999999998874   2233323333 222 2355665544433       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++|+++|.
T Consensus       100 iD~lv~~Ag~  109 (285)
T 2p91_A          100 LDIIVHSIAY  109 (285)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999974

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.24  E-value=0.0007  Score=48.89  Aligned_cols=70  Identities=23%  Similarity=0.301  Sum_probs=50.4

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE--EcCCCHHHHHHhcC---CccEEEEcCCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF--LVSRDQDEMQAAMG---TMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~---~~d~v~d~~g~  116 (220)
                      +++||.|+ |.+|..+++.+...  +|+++++++++.+.+.+.++. ..  .|..+.+.++++..   ++|++|+++|.
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   76 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEEAGPLDLLVHAVGK   76 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            36899997 99999988766555  999999988776666555543 22  34455555555443   89999999884

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.24  E-value=0.0024  Score=46.94  Aligned_cols=98  Identities=17%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHH---cCCC---EEEcCCCH-HHHHHh-cCCccEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQ-DEMQAA-MGTMDGI  110 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~-~~~~~~-~~~~d~v  110 (220)
                      +++.+||-+|+| .|..++.+++..  +.+|+.++.+++..+.+.+.   .|..   .-+-..+. +.+... .+.||+|
T Consensus        55 ~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V  133 (221)
T 3dr5_A           55 NGSTGAIAITPA-AGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLV  133 (221)
T ss_dssp             TTCCEEEEESTT-HHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred             CCCCCEEEEcCC-chHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence            445699999987 488888888876  57999999998765555333   3432   22222332 222233 3479999


Q ss_pred             EEcCCCc---ccHHHHHhccccCCEEEEeCCC
Q 027664          111 IDTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       111 ~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      |-.....   ..++.+.+.|++||.++.-...
T Consensus       134 ~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          134 FGQVSPMDLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             EECCCTTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             EEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            8544332   2467888999999999985543

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.23  E-value=0.0016  Score=48.72  Aligned_cols=72  Identities=18%  Similarity=0.188  Sum_probs=49.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCC-CHHHHHHhcCCccEEEEcCCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSR-DQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~-~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++++++..    +.++.... .|.. +.+.+.+...++|++|+++|.
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~iD~lv~~Ag~   91 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL----KRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG   91 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH----HhhCCeEEEeeHHHHHHHHHHHhcCCCEEEECCCC
Confidence            46789999997 9999999998888899999999886322    33442222 2321 122222222389999999984

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.23  E-value=0.0014  Score=49.81  Aligned_cols=96  Identities=21%  Similarity=0.123  Sum_probs=63.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHc-----CC----CEEEcCCCHHHHHHhcCCccEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL-----GA----DSFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~-----g~----~~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      ..+.+||++|+|. |..+..+++..+. +|++++.+++-.+.+.+.+     +.    -.++..+-.+.+....+.||+|
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I  152 (275)
T 1iy9_A           74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (275)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence            4568999999873 6777778877665 9999999987665554443     11    1222222233344334579998


Q ss_pred             EEcCCC----------cccHHHHHhccccCCEEEEeC
Q 027664          111 IDTVSA----------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 ~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      +--...          .+.++.+.+.|+++|.++...
T Consensus       153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            743322          235778899999999998863

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.21  E-value=0.0039  Score=44.08  Aligned_cols=95  Identities=22%  Similarity=0.205  Sum_probs=63.4

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCC--CEEEcCCCHHHHHHhc--CCccEEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA--DSFLVSRDQDEMQAAM--GTMDGII  111 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~--~~~~~~~~~~~~~~~~--~~~d~v~  111 (220)
                      .+.++.+||.+|+|. |..+..+++.. .+++.++.++...+.+.+.   .+.  ...+...+...  .+.  +.||+|+
T Consensus        30 ~~~~~~~vldiG~G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~v~  105 (192)
T 1l3i_A           30 EPGKNDVAVDVGCGT-GGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--ALCKIPDIDIAV  105 (192)
T ss_dssp             CCCTTCEEEEESCTT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--HHTTSCCEEEEE
T ss_pred             CCCCCCEEEEECCCC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--hcccCCCCCEEE
Confidence            368899999999986 88888888776 8999999998766555432   333  11121222221  222  4799998


Q ss_pred             EcCCC---cccHHHHHhccccCCEEEEeC
Q 027664          112 DTVSA---VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       112 d~~g~---~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      -....   ...+..+.+.|+++|.++...
T Consensus       106 ~~~~~~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A          106 VGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             ESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECCchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            65432   224667788999999998763

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.21  E-value=0.0007  Score=51.91  Aligned_cols=94  Identities=10%  Similarity=0.036  Sum_probs=61.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---E---EEcCCCHHHHHHhcCCccEEEEcC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---S---FLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~---~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      -.+++++|+|+|++|.+++..+...| +|+++.++.++.+.+.+.++..   .   .++..+   +.+..+++|++++|+
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~---~~~~~~~~DilVn~a  201 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSG---LDVDLDGVDIIINAT  201 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEEC---TTCCCTTCCEEEECS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEee---HHHhhCCCCEEEECC
Confidence            35789999999999999999988899 9999999887766665544310   0   011111   112234799999999


Q ss_pred             CCcccHH-----H-HHhccccCCEEEEeCC
Q 027664          115 SAVHPLM-----P-LIGLLKSQGKLVLLGA  138 (220)
Q Consensus       115 g~~~~~~-----~-~~~~l~~~G~~v~~g~  138 (220)
                      |......     . ....++++..++.+..
T Consensus       202 g~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y  231 (287)
T 1nvt_A          202 PIGMYPNIDVEPIVKAEKLREDMVVMDLIY  231 (287)
T ss_dssp             CTTCTTCCSSCCSSCSTTCCSSSEEEECCC
T ss_pred             CCCCCCCCCCCCCCCHHHcCCCCEEEEeee
Confidence            8653110     1 2345666777777654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.21  E-value=0.0021  Score=48.95  Aligned_cols=89  Identities=19%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcCCC-EEEcCCCHHHHHHhcC-CccEEEEcCCCccc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMG-TMDGIIDTVSAVHP  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~  119 (220)
                      .+|.|+|+|.+|...++.++..|.  +|++.++++++.+.+ +.+|.. ...  .+   ..+... ..|+||.|+.....
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~-~~~g~~~~~~--~~---~~~~~~~~aDvVilavp~~~~   75 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGT--TS---IAKVEDFSPDFVMLSSPVRTF   75 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEE--SC---GGGGGGTCCSEEEECSCHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-HHCCCccccc--CC---HHHHhcCCCCEEEEcCCHHHH
Confidence            368999999999999998888887  899999888776665 466753 122  11   112335 78999999987532


Q ss_pred             ---HHHHHhccccCCEEEEeCC
Q 027664          120 ---LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ---~~~~~~~l~~~G~~v~~g~  138 (220)
                         +..+...++++..++.++.
T Consensus        76 ~~v~~~l~~~l~~~~iv~~~~~   97 (281)
T 2g5c_A           76 REIAKKLSYILSEDATVTDQGS   97 (281)
T ss_dssp             HHHHHHHHHHSCTTCEEEECCS
T ss_pred             HHHHHHHHhhCCCCcEEEECCC
Confidence               2233345666666666544

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.20  E-value=0.00077  Score=50.93  Aligned_cols=71  Identities=14%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHh-------cCCccEEEEc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA-------MGTMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~d~v~d~  113 (220)
                      +|+++||.|+ +++|.++++.+...|++|++++++.++.  ..+.  .....|..+++.++++       .+++|+++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--~~~~--~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnn   85 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG--LPEE--LFVEADLTTKEGCAIVAEATRQRLGGVDVIVHM   85 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT--SCTT--TEEECCTTSHHHHHHHHHHHHHHTSSCSEEEEC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC--CCcE--EEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6899999997 8999999999999999999999876421  1111  1223455565443332       2479999998


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        86 AG~   88 (261)
T 4h15_A           86 LGG   88 (261)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            873

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=97.19  E-value=0.00072  Score=51.85  Aligned_cols=85  Identities=19%  Similarity=0.314  Sum_probs=61.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc-cc-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV-HP-  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~-  119 (220)
                      .|++|.|+|.|.+|..+++.++.+|.+|++.+++.++.+.      .. .  ..+   +.++....|+|+-+++.. .. 
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------~~-~--~~~---l~ell~~aDiV~l~~P~t~~t~  188 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------DV-I--SES---PADLFRQSDFVLIAIPLTDKTR  188 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC------SE-E--CSS---HHHHHHHCSEEEECCCCCTTTT
T ss_pred             ecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc------cc-c--cCC---hHHHhhccCeEEEEeeccccch
Confidence            4789999999999999999999999999999988654321      11 1  112   233334679999888742 11 


Q ss_pred             --H-HHHHhccccCCEEEEeCC
Q 027664          120 --L-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 --~-~~~~~~l~~~G~~v~~g~  138 (220)
                        + ...+..|+++..++.++.
T Consensus       189 ~li~~~~l~~mk~gailIN~aR  210 (290)
T 3gvx_A          189 GMVNSRLLANARKNLTIVNVAR  210 (290)
T ss_dssp             TCBSHHHHTTCCTTCEEEECSC
T ss_pred             hhhhHHHHhhhhcCceEEEeeh
Confidence              2 456788888888888764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.19  E-value=0.0015  Score=51.19  Aligned_cols=93  Identities=18%  Similarity=0.232  Sum_probs=62.9

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc----cchHHH--HHHcCCCEE-EcCCCHHHHHHhcC--CccEEEE
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP----SKKSEA--VERLGADSF-LVSRDQDEMQAAMG--TMDGIID  112 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~----~~~~~~--~~~~g~~~~-~~~~~~~~~~~~~~--~~d~v~d  112 (220)
                      ..+|||.|+ |.+|..+++.+...|.+|++++++.    ++...+  .+..+++.+ .|..+.+.+.+...  ++|+||.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~   89 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS   89 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence            357999998 9999999998888899999999976    222211  123455443 45666677777666  9999999


Q ss_pred             cCCCcc--cHHHHHhccccCC---EEEE
Q 027664          113 TVSAVH--PLMPLIGLLKSQG---KLVL  135 (220)
Q Consensus       113 ~~g~~~--~~~~~~~~l~~~G---~~v~  135 (220)
                      +++...  ....+++.++..|   +++.
T Consensus        90 ~a~~~n~~~~~~l~~aa~~~g~v~~~v~  117 (346)
T 3i6i_A           90 TVGGESILDQIALVKAMKAVGTIKRFLP  117 (346)
T ss_dssp             CCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred             CCchhhHHHHHHHHHHHHHcCCceEEee
Confidence            998632  2334555555444   5553

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.19  E-value=0.0015  Score=49.49  Aligned_cols=76  Identities=20%  Similarity=0.294  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCccchHHHHHH---cCCCE---EEcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~-~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~-------~~  105 (220)
                      ..++++||.|+ |++|..+++.+...|++|+++ .++.++.+.+.+.   .+...   ..|..+.+.++++       .+
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            46789999997 999999999888899999877 5555544443332   23321   1355555444332       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++|+++|.
T Consensus       104 ~id~li~nAg~  114 (272)
T 4e3z_A          104 RLDGLVNNAGI  114 (272)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.19  E-value=0.00042  Score=51.53  Aligned_cols=96  Identities=20%  Similarity=0.134  Sum_probs=63.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCEEEcCCCHHHH-HHhcC-CccEE-EEcC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADSFLVSRDQDEM-QAAMG-TMDGI-IDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~-~~~~~-~~d~v-~d~~  114 (220)
                      .+|.+||-+|+| .|..+..+++..+.++++++.+++-.+.+.+..   +....+...+-+.+ ..+.+ .||.| +|++
T Consensus        59 ~~G~rVLdiG~G-~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFG-MAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCT-TSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCC-ccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            789999999998 488888888877779999999987665554322   22222222332222 22222 69988 5665


Q ss_pred             CCcc----------cHHHHHhccccCCEEEEeC
Q 027664          115 SAVH----------PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       115 g~~~----------~~~~~~~~l~~~G~~v~~g  137 (220)
                      ....          .+.++.+.|+|||+++.+.
T Consensus       138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            4321          2456888999999998763

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.18  E-value=0.00093  Score=49.46  Aligned_cols=98  Identities=15%  Similarity=0.089  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHH---cCCC--EEEcCCC-HHHHHHhc-----CC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGAD--SFLVSRD-QDEMQAAM-----GT  106 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~-~~~~~~~~-----~~  106 (220)
                      ..++.+||-+|+| .|..+..+++..  +.+++.++.+++..+.+.+.   .|..  ..+...+ .+.+..+.     +.
T Consensus        70 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           70 LTGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             HHTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             hcCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            3567899999988 688899999886  46999999998766555433   2432  1122233 23334432     57


Q ss_pred             ccEEEEcCCC---cccHHHHHhccccCCEEEEeCC
Q 027664          107 MDGIIDTVSA---VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       107 ~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ||+||-....   ...+..+.+.|++||.++.-..
T Consensus       149 fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          149 FDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            9999843332   1246788899999999988644

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=97.18  E-value=0.00044  Score=50.13  Aligned_cols=92  Identities=15%  Similarity=0.085  Sum_probs=59.9

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC------------------CEEE-cCCCHHHH
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA------------------DSFL-VSRDQDEM  100 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~------------------~~~~-~~~~~~~~  100 (220)
                      +.++.+||..|||. |..+..+++. |.+|+.++.++...+.+.+..+.                  +.+. |..+... 
T Consensus        20 ~~~~~~vLD~GCG~-G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~-   96 (203)
T 1pjz_A           20 VVPGARVLVPLCGK-SQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA-   96 (203)
T ss_dssp             CCTTCEEEETTTCC-SHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH-
T ss_pred             cCCCCEEEEeCCCC-cHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc-
Confidence            57889999999874 7778888876 88999999999877777555331                  1111 1111110 


Q ss_pred             HHhcCCccEEEEcCCC----c----ccHHHHHhccccCCEEEE
Q 027664          101 QAAMGTMDGIIDTVSA----V----HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~----~----~~~~~~~~~l~~~G~~v~  135 (220)
                       ...+.||+|++...-    .    ..+..+.+.|++||++++
T Consensus        97 -~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           97 -RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             -HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             -ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence             001379999974321    1    135678889999999433

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.18  E-value=0.0065  Score=47.73  Aligned_cols=131  Identities=18%  Similarity=0.192  Sum_probs=83.3

Q ss_pred             EEEEEccchhHHH-HHHHHHH-CCCeEEEEeC-CccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027664           45 HVGVVGLGGLGHV-AVKFAKA-MGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        45 ~vlI~G~g~~G~~-~~~la~~-~g~~vi~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  121 (220)
                      ++-|+|+|.+|.. .+...+. -++++++++. ++++.+++++++|...++.  +.+++.+ ...+|+|+-|+......+
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~--d~~ell~-~~~iDaV~I~tP~~~H~~  101 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFG--SYEEMLA-SDVIDAVYIPLPTSQHIE  101 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEES--SHHHHHH-CSSCSEEEECSCGGGHHH
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeC--CHHHHhc-CCCCCEEEEeCCCchhHH
Confidence            6889999999975 3555555 4678886654 4556777778899876643  3333221 137999999999887788


Q ss_pred             HHHhccccCCEEEEeCCCCCCCCCCchh---h----hcCCe-EEEEEecCCHHHHHHHHHHHHcCCCcc
Q 027664          122 PLIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTGRK-IVGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       122 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~~-~~~~~~~~~~~~~~~~~~~i~~g~i~~  182 (220)
                      .+..+++.|-. |++   ..+...+...   +    -.++. ...++..+....++.+.+++++|.|-.
T Consensus       102 ~~~~al~aGkh-Vl~---EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~G~iG~  166 (350)
T 4had_A          102 WSIKAADAGKH-VVC---EKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDEGAIGS  166 (350)
T ss_dssp             HHHHHHHTTCE-EEE---CSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTTSS
T ss_pred             HHHHHHhcCCE-EEE---eCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhcCCCCc
Confidence            88888876544 455   3343333322   1    11222 334444433456777888888888753

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.18  E-value=0.0098  Score=46.38  Aligned_cols=132  Identities=16%  Similarity=0.051  Sum_probs=80.0

Q ss_pred             CEEEEEccchhHHHHHHHHHHC-CCeEEEE-eCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAM-GVKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~-g~~vi~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  121 (220)
                      -++.|+|+|.+|...+..++.. +.+++.+ +++.++.+.+.+.+|...+  +.+.+.+.+ ...+|+|+.|+......+
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~--~~~~~~ll~-~~~~D~V~i~tp~~~h~~   82 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVA--YGSYEELCK-DETIDIIYIPTYNQGHYS   82 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCC--BSSHHHHHH-CTTCSEEEECCCGGGHHH
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCce--eCCHHHHhc-CCCCCEEEEcCCCHHHHH
Confidence            4688999999999888777764 6687755 4555666677777776433  233332211 137999999999887777


Q ss_pred             HHHhccccCCEEEEeCCCCCCCCCCchh---h----hcCCeE-EEEEecCCHHHHHHHHHHHHcCCCcc
Q 027664          122 PLIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTGRKI-VGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       122 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~~~-~~~~~~~~~~~~~~~~~~i~~g~i~~  182 (220)
                      .+..++..|-.++ +   ..+...+...   +    -.++.. ..++..+....++.+.+++++|.+-.
T Consensus        83 ~~~~al~~gk~vl-~---EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~  147 (330)
T 3e9m_A           83 AAKLALSQGKPVL-L---EKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQEGGLGE  147 (330)
T ss_dssp             HHHHHHHTTCCEE-E---CSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHCCCeEE-E---eCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHhCCCCCC
Confidence            7888887765544 3   2232332221   1    112332 23333333345667777777777653

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.18  E-value=0.00077  Score=53.58  Aligned_cols=76  Identities=20%  Similarity=0.126  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCccchHHHHH-HcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVE-RLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      .+.+|||.|+ |.+|..+++.+...| .+|++++++..+.....+ .-++..+ .|..+.+.+.++..++|+||.+++..
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~~~  110 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATYH  110 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCCCS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCCcc
Confidence            4578999997 999999999888889 899999987654221111 1112221 24455666777777999999999853

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=97.17  E-value=0.00041  Score=51.97  Aligned_cols=105  Identities=15%  Similarity=0.086  Sum_probs=67.6

Q ss_pred             HHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCHHHHHHhcCCc
Q 027664           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~~~~~~~~~~~  107 (220)
                      .+.....++++.+||-+|+|. |..+..+++..+.+|++++.++...+.+.+.   .|..  ..+...+...+....+.|
T Consensus        37 ~l~~l~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  115 (257)
T 3f4k_A           37 AVSFINELTDDAKIADIGCGT-GGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEEL  115 (257)
T ss_dssp             HHTTSCCCCTTCEEEEETCTT-SHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCE
T ss_pred             HHHHHhcCCCCCeEEEeCCCC-CHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCE
Confidence            344444568899999999984 8889999998877999999998766554332   3321  111111211111012379


Q ss_pred             cEEEEcC-----CCcccHHHHHhccccCCEEEEeCC
Q 027664          108 DGIIDTV-----SAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       108 d~v~d~~-----g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      |+|+-..     +....+..+.+.|++||+++....
T Consensus       116 D~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          116 DLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             EEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            9997432     122346788899999999988753

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=97.17  E-value=0.0019  Score=50.78  Aligned_cols=88  Identities=15%  Similarity=0.255  Sum_probs=62.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc-c--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV-H--  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~--  118 (220)
                      .|+++.|+|.|.+|..+++.++.+|.+|++.+++....+..   .|+..+   .+   +.++....|+|+-++... +  
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~---~g~~~~---~~---l~ell~~sDvV~l~~Plt~~T~  242 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE---EGAIYH---DT---LDSLLGASDIFLIAAPGRPELK  242 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH---TTCEEC---SS---HHHHHHTCSEEEECSCCCGGGT
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh---cCCeEe---CC---HHHHHhhCCEEEEecCCCHHHH
Confidence            47899999999999999999999999999999886443322   244321   12   334445689998888742 1  


Q ss_pred             -cH-HHHHhccccCCEEEEeCC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g~  138 (220)
                       .+ ...+..|+++..++.++.
T Consensus       243 ~li~~~~l~~mk~gailIN~aR  264 (345)
T 4g2n_A          243 GFLDHDRIAKIPEGAVVINISR  264 (345)
T ss_dssp             TCBCHHHHHHSCTTEEEEECSC
T ss_pred             HHhCHHHHhhCCCCcEEEECCC
Confidence             12 456778888888888763

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.17  E-value=0.0058  Score=47.38  Aligned_cols=101  Identities=17%  Similarity=0.194  Sum_probs=66.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCccchHHHHHH----cCCCEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVER----LGADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~-~g~-~vi~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      +..++++|+|+|.+|...++.+.. .+. +|.+..++  +.+.+++.    +|.+....  +   .++...+.|+|+.|+
T Consensus       119 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~--~---~~eav~~aDIVi~aT  191 (313)
T 3hdj_A          119 PRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA--A---PADIAAQADIVVTAT  191 (313)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC--C---HHHHHHHCSEEEECC
T ss_pred             CCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe--C---HHHHHhhCCEEEEcc
Confidence            567899999999999988876654 566 78888888  44444443    46543322  2   223334689999999


Q ss_pred             CCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchh
Q 027664          115 SAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFP  149 (220)
Q Consensus       115 g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~  149 (220)
                      +....+-. ...++++-.++.+|..... .+++..-
T Consensus       192 ~s~~pvl~-~~~l~~G~~V~~vGs~~p~~~El~~~~  226 (313)
T 3hdj_A          192 RSTTPLFA-GQALRAGAFVGAIGSSLPHTRELDDEA  226 (313)
T ss_dssp             CCSSCSSC-GGGCCTTCEEEECCCSSTTCCCCCHHH
T ss_pred             CCCCcccC-HHHcCCCcEEEECCCCCCchhhcCHHH
Confidence            86532211 3568889999999876432 4455443

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.17  E-value=0.0012  Score=47.97  Aligned_cols=100  Identities=13%  Similarity=0.025  Sum_probs=65.3

Q ss_pred             hhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-CEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           36 FYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        36 ~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      ....+.++.+||-+|+|. |..+..+++. |.++++++.++...+.+. ..+. ..-+...+.... ...+.||+|+-..
T Consensus        40 ~l~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~v~~~D~s~~~~~~a~-~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~  115 (218)
T 3ou2_A           40 RLRAGNIRGDVLELASGT-GYWTRHLSGL-ADRVTALDGSAEMIAEAG-RHGLDNVEFRQQDLFDW-TPDRQWDAVFFAH  115 (218)
T ss_dssp             HHTTTTSCSEEEEESCTT-SHHHHHHHHH-SSEEEEEESCHHHHHHHG-GGCCTTEEEEECCTTSC-CCSSCEEEEEEES
T ss_pred             HHhcCCCCCeEEEECCCC-CHHHHHHHhc-CCeEEEEeCCHHHHHHHH-hcCCCCeEEEecccccC-CCCCceeEEEEec
Confidence            344467888999999875 7778888877 889999999987666663 3442 211211221111 1123799998543


Q ss_pred             CC--------cccHHHHHhccccCCEEEEeCCC
Q 027664          115 SA--------VHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       115 g~--------~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      .-        ...+..+.+.|+++|.++.....
T Consensus       116 ~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          116 WLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            21        22467778899999999887543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.16  E-value=0.0023  Score=47.32  Aligned_cols=93  Identities=11%  Similarity=0.084  Sum_probs=62.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHh-cCCccEEEEcCCCcc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAVH  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~-~~~~d~v~d~~g~~~  118 (220)
                      ....+++|.|+|.+|..+++.+...|. |+++++++++.+.+.  .+...+. |..+.+.+++. ..++|.++-+++.+.
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   83 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS   83 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH
Confidence            456789999999999999999888888 888888877666553  5654332 44455666555 458999999998763


Q ss_pred             c---HHHHHhccccCCEEEEe
Q 027664          119 P---LMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       119 ~---~~~~~~~l~~~G~~v~~  136 (220)
                      .   .....+.+.+..+++.-
T Consensus        84 ~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           84 ETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             HHHHHHHHHHHHCSSSEEEEE
T ss_pred             HHHHHHHHHHHHCCCCeEEEE
Confidence            2   12233444455466554

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.16  E-value=0.0014  Score=50.16  Aligned_cols=87  Identities=20%  Similarity=0.215  Sum_probs=58.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLI  124 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~  124 (220)
                      +|.|+|.|.+|...++.+...|.+|++.++++++.+.+. +.|...   ..+.   .+.....|+||-|+..+......+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~---~~~~---~~~~~~advvi~~v~~~~~~~~v~   75 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLV-ALGARQ---ASSP---AEVCAACDITIAMLADPAAAREVC   75 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHH-HHTCEE---CSCH---HHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-HCCCee---cCCH---HHHHHcCCEEEEEcCCHHHHHHHH
Confidence            588999999999999888888999999999998877774 446532   1122   222235789999988753344333


Q ss_pred             -------hccccCCEEEEeCC
Q 027664          125 -------GLLKSQGKLVLLGA  138 (220)
Q Consensus       125 -------~~l~~~G~~v~~g~  138 (220)
                             ..++++..++..+.
T Consensus        76 ~~~~~l~~~l~~g~~vv~~st   96 (287)
T 3pdu_A           76 FGANGVLEGIGGGRGYIDMST   96 (287)
T ss_dssp             HSTTCGGGTCCTTCEEEECSC
T ss_pred             cCchhhhhcccCCCEEEECCC
Confidence                   44555666665543

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.16  E-value=0.0026  Score=49.92  Aligned_cols=86  Identities=27%  Similarity=0.259  Sum_probs=59.4

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  122 (220)
                      +.+|.|+|+|.+|...++.++..|.+|++.++++++..+..+..|....    +.   .+.....|+|+-|+.... ...
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~----~~---~e~~~~aDvVilavp~~~-~~~   87 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA----DV---KTAVAAADVVMILTPDEF-QGR   87 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE----CH---HHHHHTCSEEEECSCHHH-HHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc----cH---HHHHhcCCEEEEeCCcHH-HHH
Confidence            3569999999999999999999999999888887664444466776422    22   222347899999998753 333


Q ss_pred             HH-----hccccCCEEEEe
Q 027664          123 LI-----GLLKSQGKLVLL  136 (220)
Q Consensus       123 ~~-----~~l~~~G~~v~~  136 (220)
                      .+     ..++++..++..
T Consensus        88 v~~~~i~~~l~~~~ivi~~  106 (338)
T 1np3_A           88 LYKEEIEPNLKKGATLAFA  106 (338)
T ss_dssp             HHHHHTGGGCCTTCEEEES
T ss_pred             HHHHHHHhhCCCCCEEEEc
Confidence            33     345556666644

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.16  E-value=0.0021  Score=50.23  Aligned_cols=34  Identities=29%  Similarity=0.418  Sum_probs=29.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      .+.+|+|+|+|++|..+++.+...|+ ++++++..
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            46899999999999999999999999 77777654

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.14  E-value=0.0034  Score=48.80  Aligned_cols=129  Identities=12%  Similarity=0.106  Sum_probs=79.2

Q ss_pred             EEEEEccchhHH-HHHHHHHHC-CCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027664           45 HVGVVGLGGLGH-VAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        45 ~vlI~G~g~~G~-~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  122 (220)
                      +|.|+|+|.+|. ..+..++.. +.++++.++++++.+.+.+.+|....+. +..+.+   ...+|+|+.|++.....+.
T Consensus         4 ~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~-~~~~~l---~~~~D~V~i~tp~~~h~~~   79 (323)
T 1xea_A            4 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCT-DYRDVL---QYGVDAVMIHAATDVHSTL   79 (323)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCS-STTGGG---GGCCSEEEECSCGGGHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCcccc-CHHHHh---hcCCCEEEEECCchhHHHH
Confidence            588999999997 466665554 6787767777777777777788653111 112222   2479999999998766677


Q ss_pred             HHhccccCCEEEEeCCCCCCCCCCchh---h----hcCCe-EEEEEecCCHHHHHHHHHHHHcCCCc
Q 027664          123 LIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTGRK-IVGGSLIGGLKETQEMIDFAAKHNIR  181 (220)
Q Consensus       123 ~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~~-~~~~~~~~~~~~~~~~~~~i~~g~i~  181 (220)
                      +..+++.|-.++ +.   .+...+...   +    -.++. .+.++..+....++.+.+++++|.+-
T Consensus        80 ~~~al~~Gk~V~-~E---KP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG  142 (323)
T 1xea_A           80 AAFFLHLGIPTF-VD---KPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSELAQQECG  142 (323)
T ss_dssp             HHHHHHTTCCEE-EE---SCSCSSHHHHHHHHHHHHHTTCCEEEECGGGCCHHHHHHCHHHHHTSCT
T ss_pred             HHHHHHCCCeEE-Ee---CCCcCCHHHHHHHHHHHHhcCCeEEEeeccccCHHHHHHHHHHhcCCcC
Confidence            777777654443 32   222222221   1    12333 33444444445577788888888775

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.13  E-value=0.0012  Score=51.41  Aligned_cols=76  Identities=16%  Similarity=0.062  Sum_probs=51.1

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccch--HHHHHHc----CCCEE-EcCCCHHHHHHhcC--CccE
Q 027664           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK--SEAVERL----GADSF-LVSRDQDEMQAAMG--TMDG  109 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~--~~~~~~~----g~~~~-~~~~~~~~~~~~~~--~~d~  109 (220)
                      -+++.+|||.|+ |.+|..+++.+...|.+|++++++..+.  ..+ +.+    +...+ .|..+.+.+.+...  ++|+
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   89 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRL-RELGIEGDIQYEDGDMADACSVQRAVIKAQPQE   89 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHH-HHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccch-hhccccCceEEEECCCCCHHHHHHHHHHcCCCE
Confidence            368899999997 9999999988888899999999876531  122 222    22222 35555665655544  5899


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      ||.+++.
T Consensus        90 Vih~A~~   96 (335)
T 1rpn_A           90 VYNLAAQ   96 (335)
T ss_dssp             EEECCSC
T ss_pred             EEECccc
Confidence            9999985

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.12  E-value=0.018  Score=45.16  Aligned_cols=131  Identities=18%  Similarity=0.246  Sum_probs=81.6

Q ss_pred             EEEEEccchhHHHHHHHHHHC-CCeEEEE-eCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM-GVKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~-g~~vi~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  122 (220)
                      +|.|+|+|.+|...+..++.. +++++.+ ++++++.+.+.+.+|...++  .+.+.+.+ ...+|+|+.|+......+.
T Consensus         4 rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~--~~~~~ll~-~~~~D~V~i~tp~~~h~~~   80 (344)
T 3ezy_A            4 RIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAY--KDPHELIE-DPNVDAVLVCSSTNTHSEL   80 (344)
T ss_dssp             EEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEE--SSHHHHHH-CTTCCEEEECSCGGGHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCcee--CCHHHHhc-CCCCCEEEEcCCCcchHHH
Confidence            688999999999877766654 6687754 55566667777778875554  23322211 1379999999998877777


Q ss_pred             HHhccccCCEEEEeCCCCCCCCCCchh---h----hcCC-eEEEEEecCCHHHHHHHHHHHHcCCCcc
Q 027664          123 LIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTGR-KIVGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       123 ~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~-~~~~~~~~~~~~~~~~~~~~i~~g~i~~  182 (220)
                      +..++..|-.++ +.   .+...+...   +    -.++ ....++..+....++.+.+++.+|.+-.
T Consensus        81 ~~~al~~gk~v~-~E---KP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~  144 (344)
T 3ezy_A           81 VIACAKAKKHVF-CE---KPLSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAVENGTIGK  144 (344)
T ss_dssp             HHHHHHTTCEEE-EE---SCSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHTTTTSS
T ss_pred             HHHHHhcCCeEE-EE---CCCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHHcCCCCC
Confidence            777887765544 32   232333221   1    1122 2334444444456777888888887754

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.11  E-value=0.0017  Score=49.38  Aligned_cols=89  Identities=12%  Similarity=0.119  Sum_probs=60.8

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCcc----
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVH----  118 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~----  118 (220)
                      .+|||.|+|.+|..++..+...|.+|+++++++.+...+ ...+.+.+ .|..+.+     ..++|+||.+++...    
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~d~~-----~~~~d~vi~~a~~~~~~~~   79 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAI-RASGAEPLLWPGEEPS-----LDGVTHLLISTAPDSGGDP   79 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHH-HHTTEEEEESSSSCCC-----CTTCCEEEECCCCBTTBCH
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhH-hhCCCeEEEecccccc-----cCCCCEEEECCCccccccH
Confidence            579999999999999998888899999999998766555 34454433 2333311     458999999997532    


Q ss_pred             cHHHHHhcccc----CCEEEEeCC
Q 027664          119 PLMPLIGLLKS----QGKLVLLGA  138 (220)
Q Consensus       119 ~~~~~~~~l~~----~G~~v~~g~  138 (220)
                      .....++.++.    -.+++.++.
T Consensus        80 ~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           80 VLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             HHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             HHHHHHHHHHhhcCCceEEEEeec
Confidence            12334444433    267776553

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.11  E-value=0.0022  Score=49.72  Aligned_cols=88  Identities=24%  Similarity=0.259  Sum_probs=60.4

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  123 (220)
                      .+|.|+|+|.+|...+..+...|.+|++.++++++.+.+. +.|.. +  ..+..   +.....|+||.|+..+......
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~-~--~~~~~---~~~~~~DvVi~av~~~~~~~~v  103 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI-QEGAR-L--GRTPA---EVVSTCDITFACVSDPKAAKDL  103 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHH-HTTCE-E--CSCHH---HHHHHCSEEEECCSSHHHHHHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HcCCE-E--cCCHH---HHHhcCCEEEEeCCCHHHHHHH
Confidence            5699999999999999888888999999999888777663 45653 1  12221   2223579999999965444444


Q ss_pred             H-------hccccCCEEEEeCC
Q 027664          124 I-------GLLKSQGKLVLLGA  138 (220)
Q Consensus       124 ~-------~~l~~~G~~v~~g~  138 (220)
                      +       ..+.++..++.++.
T Consensus       104 ~~~~~~~~~~l~~~~~vv~~s~  125 (316)
T 2uyy_A          104 VLGPSGVLQGIRPGKCYVDMST  125 (316)
T ss_dssp             HHSTTCGGGGCCTTCEEEECSC
T ss_pred             HcCchhHhhcCCCCCEEEECCC
Confidence            3       34556666666643

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.11  E-value=0.002  Score=47.31  Aligned_cols=96  Identities=24%  Similarity=0.240  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHHHcC----CCEEE-cCCCHHHHHHhcCCccEEEE
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERLG----ADSFL-VSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~~g----~~~~~-~~~~~~~~~~~~~~~d~v~d  112 (220)
                      +.++++||-+|+|. |..+..+++..|  .+|+.++.++...+.+.+...    .+.+. |..+........+.||+|+-
T Consensus        71 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           71 IKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence            57899999999975 888888888764  599999998864444433221    11111 11111111122347999986


Q ss_pred             cCCCcc---c-HHHHHhccccCCEEEEe
Q 027664          113 TVSAVH---P-LMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       113 ~~g~~~---~-~~~~~~~l~~~G~~v~~  136 (220)
                      ....+.   . +..+.+.|++||+++..
T Consensus       150 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          150 DVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            554332   2 66788999999999887

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.11  E-value=0.0012  Score=49.81  Aligned_cols=75  Identities=16%  Similarity=0.285  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~-~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++.. ++.++.++..+.+   +...   ..|..+.+.++++       .++
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGA  104 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4678999997 9999999998888999987755 4444444433332   3221   2355555544333       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       105 id~li~nAg~  114 (267)
T 4iiu_A          105 WYGVVSNAGI  114 (267)
T ss_dssp             CSEEEECCCC
T ss_pred             ccEEEECCCC
Confidence            9999999885

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.10  E-value=0.006  Score=48.22  Aligned_cols=131  Identities=18%  Similarity=0.189  Sum_probs=79.0

Q ss_pred             CEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  122 (220)
                      -+|.|+|+|.+|...+..++.. +++++.+......+.+..+.+|+. +  +.+.+.+.+ ...+|+|+.|+......+.
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~-~--~~~~~~ll~-~~~~D~V~i~tp~~~h~~~   81 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLK-I--YESYEAVLA-DEKVDAVLIATPNDSHKEL   81 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCC-B--CSCHHHHHH-CTTCCEEEECSCGGGHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCc-e--eCCHHHHhc-CCCCCEEEEcCCcHHHHHH
Confidence            4689999999999888877766 678887655544333444566763 2  334333221 1379999999998877788


Q ss_pred             HHhccccCCEEEEeCCCCCCCCCCchh---h----hcCCe-EEEEEecCCHHHHHHHHHHHHcCCCcc
Q 027664          123 LIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTGRK-IVGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       123 ~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~~-~~~~~~~~~~~~~~~~~~~i~~g~i~~  182 (220)
                      +..+++.|-.++ +   ..+...+...   +    -.++. ...++..+....++.+.+++++|.+-.
T Consensus        82 ~~~al~aGkhVl-~---EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~  145 (359)
T 3e18_A           82 AISALEAGKHVV-C---EKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTIGE  145 (359)
T ss_dssp             HHHHHHTTCEEE-E---ESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHHTTTSS
T ss_pred             HHHHHHCCCCEE-e---eCCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHcCCCCC
Confidence            888888765544 3   2233332221   1    11222 233443333355677777788877653

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.10  E-value=0.0034  Score=48.70  Aligned_cols=99  Identities=20%  Similarity=0.186  Sum_probs=64.0

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHHH---cCC-CEEEcCCCHHHHHHhcCCccEEE-
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVER---LGA-DSFLVSRDQDEMQAAMGTMDGII-  111 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~---~g~-~~~~~~~~~~~~~~~~~~~d~v~-  111 (220)
                      .+++|++||-.|+|+ |..+.++++..+  .+|++++.++.+.+.+.+.   +|. +..+...+........+.||.|+ 
T Consensus       115 ~~~~g~~VLDlg~G~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~  193 (315)
T 1ixk_A          115 DPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  193 (315)
T ss_dssp             CCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEE
Confidence            368899999998874 666777887753  5999999998876655443   354 22222233222222334799987 


Q ss_pred             E--cCCCc-------------------------ccHHHHHhccccCCEEEEeCC
Q 027664          112 D--TVSAV-------------------------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       112 d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      |  |+|..                         ..+..+.+.|++||+++....
T Consensus       194 d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          194 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  247 (315)
T ss_dssp             ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             eCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            3  33321                         245668889999999988643

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.10  E-value=0.00058  Score=54.17  Aligned_cols=118  Identities=14%  Similarity=0.106  Sum_probs=72.6

Q ss_pred             hhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc-------cchHHHHHHcCCCEEEcCCCHHHHH
Q 027664           30 VYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP-------SKKSEAVERLGADSFLVSRDQDEMQ  101 (220)
Q Consensus        30 a~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~~~~  101 (220)
                      -+.+++..+.--+..+|+|.|+|..|..+++++...|+ +|++++++.       +++..+.+.+.-+ .-.......+.
T Consensus       175 ll~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~-~~~~~~~~~L~  253 (398)
T 2a9f_A          175 IFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKV-TNREFKSGTLE  253 (398)
T ss_dssp             HHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHH-HSCTTCCCSCS
T ss_pred             HHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhc-cCcccchhhHH
Confidence            34455544432356789999999999999999999999 999998874       1122221111110 00001111122


Q ss_pred             HhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhh
Q 027664          102 AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL  150 (220)
Q Consensus       102 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  150 (220)
                      +...++|++|-+++..-.-++.++.|+++..+..+..+.  .+..+...
T Consensus       254 eav~~ADV~IG~Sapgl~T~EmVk~Ma~~pIIfalsNPt--~E~~pe~a  300 (398)
T 2a9f_A          254 DALEGADIFIGVSAPGVLKAEWISKMAARPVIFAMANPI--PEIYPDEA  300 (398)
T ss_dssp             HHHHTTCSEEECCSTTCCCHHHHHTSCSSCEEEECCSSS--CSSCHHHH
T ss_pred             HHhccCCEEEecCCCCCCCHHHHHhhCCCCEEEECCCCC--ccCCHHHH
Confidence            333468999998874434578889999999998887755  24444443

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=97.10  E-value=0.001  Score=49.55  Aligned_cols=95  Identities=20%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHH-CCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhc-----CCccEEEEcC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKA-MGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTV  114 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~-~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~d~v~d~~  114 (220)
                      .++++||.|+ |++|..+++.+.. .|.+|+.++++++....   .. .....|..+.+.++++.     +++|++++++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~---~~-~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~nA   78 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAE---NL-KFIKADLTKQQDITNVLDIIKNVSFDGIFLNA   78 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCCT---TE-EEEECCTTCHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccccc---cc-eEEecCcCCHHHHHHHHHHHHhCCCCEEEECC
Confidence            4678999997 8999999876655 67899988877652111   11 01223555655544432     2799999999


Q ss_pred             CCcc-------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          115 SAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       115 g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      |...                         ..+.+...++++|+++.++...
T Consensus        79 g~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~  129 (244)
T 4e4y_A           79 GILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQ  129 (244)
T ss_dssp             CCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGG
T ss_pred             ccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHH
Confidence            8521                         0122344566678999887654

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.09  E-value=0.0015  Score=49.14  Aligned_cols=75  Identities=15%  Similarity=0.075  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHH---CCCeEEEEeCCccchHHHHHHc-----CCCE---EEcCCCHHHHHHh----c-
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKA---MGVKVTVISTSPSKKSEAVERL-----GADS---FLVSRDQDEMQAA----M-  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~---~g~~vi~~~~~~~~~~~~~~~~-----g~~~---~~~~~~~~~~~~~----~-  104 (220)
                      .++++||.|+ |++|..+++.+..   .|++|++++++.++.+.+.+.+     +...   ..|..+.+.++++    . 
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            4678999997 9999999987766   8999999999987666554443     3221   1355555443332    1 


Q ss_pred             ----CCcc--EEEEcCCC
Q 027664          105 ----GTMD--GIIDTVSA  116 (220)
Q Consensus       105 ----~~~d--~v~d~~g~  116 (220)
                          +++|  ++++++|.
T Consensus        85 ~~~~g~~d~~~lvnnAg~  102 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAAT  102 (259)
T ss_dssp             SCCCTTCCEEEEEECCCC
T ss_pred             ccccccCCccEEEECCcc
Confidence                2578  99999874

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=97.09  E-value=0.0018  Score=50.48  Aligned_cols=75  Identities=17%  Similarity=0.184  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHH--HHcC-----CCEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV--ERLG-----ADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~--~~~g-----~~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .+++|||.|+ |.+|..+++.+...|.+|++++++.+......  ..+.     ...+ .|..+.+.+.+...++|+||.
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   83 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFH   83 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence            4678999997 99999999888888999998888765332221  1121     1112 244555556666678999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      +++.
T Consensus        84 ~A~~   87 (337)
T 2c29_D           84 VATP   87 (337)
T ss_dssp             CCCC
T ss_pred             eccc
Confidence            8863

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.09  E-value=0.0035  Score=47.62  Aligned_cols=87  Identities=21%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC-EEEcCCCHHHHHHhcCCccEEEEcCCCcc---cH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMGTMDGIIDTVSAVH---PL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---~~  120 (220)
                      +|.|+|+|.+|...+..+...|.+|+++++++++.+.+ ++.|.. ...  .+   ..+. .+.|+||-|+....   .+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~~~~--~~---~~~~-~~~D~vi~av~~~~~~~~~   74 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-VERQLVDEAG--QD---LSLL-QTAKIIFLCTPIQLILPTL   74 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTSCSEEE--SC---GGGG-TTCSEEEECSCHHHHHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HhCCCCcccc--CC---HHHh-CCCCEEEEECCHHHHHHHH
Confidence            58899999999999998888899999999888777666 456653 222  12   2233 57899999998652   12


Q ss_pred             HHHHhccccCCEEEEeCC
Q 027664          121 MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~  138 (220)
                      ..+...++++..++.++.
T Consensus        75 ~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           75 EKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             HHHGGGSCTTCEEEECCS
T ss_pred             HHHHhhCCCCCEEEECCC
Confidence            233344555666666533

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.08  E-value=0.0021  Score=47.21  Aligned_cols=87  Identities=17%  Similarity=0.226  Sum_probs=61.1

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEE-EeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTV-ISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  122 (220)
                      .+|.|+|+|.+|...++.+...|.+|++ .++++++.+.+.+.+|.....+  ..+.    ....|+||-|+... ....
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~--~~~~----~~~aDvVilavp~~-~~~~   96 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAV--ELKD----ALQADVVILAVPYD-SIAD   96 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEEC--CHHH----HTTSSEEEEESCGG-GHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccC--hHHH----HhcCCEEEEeCChH-HHHH
Confidence            4699999999999999888888998888 7888888888777777654422  2222    24689999999855 4555


Q ss_pred             HHhccc--cCCEEEEeC
Q 027664          123 LIGLLK--SQGKLVLLG  137 (220)
Q Consensus       123 ~~~~l~--~~G~~v~~g  137 (220)
                      .+..+.  ++..++.+.
T Consensus        97 v~~~l~~~~~~ivi~~~  113 (220)
T 4huj_A           97 IVTQVSDWGGQIVVDAS  113 (220)
T ss_dssp             HHTTCSCCTTCEEEECC
T ss_pred             HHHHhhccCCCEEEEcC
Confidence            555543  333444443

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=97.08  E-value=0.0014  Score=55.77  Aligned_cols=75  Identities=20%  Similarity=0.248  Sum_probs=48.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeC---------CccchHHHHH---HcCCCEEEcCCCHHHHHHhc----
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST---------SPSKKSEAVE---RLGADSFLVSRDQDEMQAAM----  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~---------~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~----  104 (220)
                      .|+++||.|+ +++|..+++.+...|++|+++++         +.++.+...+   ..+...+.|..+.+.++++.    
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~~   97 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAI   97 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC---
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence            5788999997 89999999988888999999876         4444444333   34555666776655444332    


Q ss_pred             ---CCccEEEEcCCC
Q 027664          105 ---GTMDGIIDTVSA  116 (220)
Q Consensus       105 ---~~~d~v~d~~g~  116 (220)
                         +++|++|+++|.
T Consensus        98 ~~~g~iDiLVnnAGi  112 (613)
T 3oml_A           98 KAFGRVDILVNNAGI  112 (613)
T ss_dssp             -------CEECCCCC
T ss_pred             HHCCCCcEEEECCCC
Confidence               369999999985

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=97.07  E-value=0.0014  Score=51.08  Aligned_cols=74  Identities=14%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH-HHHHHcC----CCEE-EcCCCHHHHHHhcC--CccEEEEc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS-EAVERLG----ADSF-LVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~-~~~~~~g----~~~~-~~~~~~~~~~~~~~--~~d~v~d~  113 (220)
                      +.+|||.|+ |.+|..+++.+...|.+|++++++.++.. ...+.++    ...+ .|..+.+.+.+...  ++|+||++
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   82 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNL   82 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEEC
Confidence            578999997 99999999888888999999998865431 1123332    1111 24455555555444  57999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        83 A~~   85 (345)
T 2z1m_A           83 AAQ   85 (345)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            985

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.07  E-value=0.0018  Score=50.71  Aligned_cols=87  Identities=22%  Similarity=0.242  Sum_probs=62.5

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~--  119 (220)
                      .|++|.|+|.|.+|..+++.++.+|.+|++.+++.++.  + +.. ++.+   .+   +.+.....|+|+.++.....  
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-~~~~---~~---l~ell~~aDvV~l~~p~~~~t~  214 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-GYYV---DS---LDDLYKQADVISLHVPDVPANV  214 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-TCBC---SC---HHHHHHHCSEEEECSCCCGGGT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-Ceec---CC---HHHHHhhCCEEEEcCCCcHHHH
Confidence            46899999999999999999999999999999887543  2 232 3211   12   23333467999999875321  


Q ss_pred             --H-HHHHhccccCCEEEEeCC
Q 027664          120 --L-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 --~-~~~~~~l~~~G~~v~~g~  138 (220)
                        + ...+..+++++.++.++.
T Consensus       215 ~li~~~~l~~mk~ga~lIn~ar  236 (333)
T 1j4a_A          215 HMINDESIAKMKQDVVIVNVSR  236 (333)
T ss_dssp             TCBSHHHHHHSCTTEEEEECSC
T ss_pred             HHHhHHHHhhCCCCcEEEECCC
Confidence              2 346678888888888864

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.06  E-value=0.0044  Score=48.08  Aligned_cols=85  Identities=18%  Similarity=0.254  Sum_probs=58.9

Q ss_pred             CEEEEEccchhHHH-HHHHHHH-CCCeEE-EEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           44 MHVGVVGLGGLGHV-AVKFAKA-MGVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~-~~~la~~-~g~~vi-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      -+|.|+|+|.+|.. .+..++. -+.+++ +.++++++.+.+.+.+|.. .  +.+.+.+   ...+|+|+.|++.....
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~-~--~~~~~~l---~~~~D~V~i~tp~~~h~   79 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIP-Y--ADSLSSL---AASCDAVFVHSSTASHF   79 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCC-B--CSSHHHH---HTTCSEEEECSCTTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCC-c--cCcHHHh---hcCCCEEEEeCCchhHH
Confidence            36899999999985 6665544 567777 5566666777777777865 2  3343433   35799999999987666


Q ss_pred             HHHHhccccCCEEE
Q 027664          121 MPLIGLLKSQGKLV  134 (220)
Q Consensus       121 ~~~~~~l~~~G~~v  134 (220)
                      +.+..+++.|-.++
T Consensus        80 ~~~~~al~~G~~v~   93 (319)
T 1tlt_A           80 DVVSTLLNAGVHVC   93 (319)
T ss_dssp             HHHHHHHHTTCEEE
T ss_pred             HHHHHHHHcCCeEE
Confidence            77777777655444

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.06  E-value=0.0071  Score=45.17  Aligned_cols=98  Identities=15%  Similarity=0.081  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHH---cCCC--EEEcCCC-HHHHHHh------cC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGAD--SFLVSRD-QDEMQAA------MG  105 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~-~~~~~~~------~~  105 (220)
                      ..++++||-+|+| .|..++.+++.+  +.+|+.++.+++..+.+.+.   .|..  .-+-..+ .+.+...      .+
T Consensus        77 ~~~~~~VLeiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~  155 (247)
T 1sui_A           77 LINAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHG  155 (247)
T ss_dssp             HTTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred             hhCcCEEEEeCCC-cCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence            3567899999987 488888888886  57999999998765555332   3431  1122223 2333333      35


Q ss_pred             CccEEEEcCCC---cccHHHHHhccccCCEEEEeCC
Q 027664          106 TMDGIIDTVSA---VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       106 ~~d~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      .||+||-....   ...+..+.+.|++||.++.-..
T Consensus       156 ~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          156 SYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             CBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             CEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            79999844332   2246778899999999987543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.05  E-value=0.0027  Score=46.39  Aligned_cols=99  Identities=12%  Similarity=0.030  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCH-HHHHHhc----CCc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQ-DEMQAAM----GTM  107 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~-~~~~~~~----~~~  107 (220)
                      ..++.+||-+|+| .|..+..+++..  +.+|+.++.+++..+.+.+.   .|..  ..+-..+. +.+..+.    +.|
T Consensus        56 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f  134 (223)
T 3duw_A           56 IQGARNILEIGTL-GGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF  134 (223)
T ss_dssp             HHTCSEEEEECCT-TSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred             hhCCCEEEEecCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence            4578899999987 488888888886  56999999998766555332   3432  12222232 3333322    469


Q ss_pred             cEEEEcCCCc---ccHHHHHhccccCCEEEEeCCC
Q 027664          108 DGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       108 d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      |+||-.....   ..+..+.+.|++||.++.-...
T Consensus       135 D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          135 DFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            9998443322   2467788999999988876543

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=97.05  E-value=0.0022  Score=50.14  Aligned_cols=75  Identities=20%  Similarity=0.112  Sum_probs=51.0

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc----------hHHHHHHcC--CCEE-EcCCCHHHHHHhcC--C
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK----------KSEAVERLG--ADSF-LVSRDQDEMQAAMG--T  106 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~----------~~~~~~~~g--~~~~-~~~~~~~~~~~~~~--~  106 (220)
                      +.+|||.|+ |.+|..+++.+...|.+|+++++....          ...+.+..+  +..+ .|..+.+.+.++..  +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS   81 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcC
Confidence            468999997 999999998888889999999875322          222211122  3222 35556666666554  8


Q ss_pred             ccEEEEcCCCc
Q 027664          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~v~d~~g~~  117 (220)
                      +|+||.+++..
T Consensus        82 ~d~vih~A~~~   92 (348)
T 1ek6_A           82 FMAVIHFAGLK   92 (348)
T ss_dssp             EEEEEECCSCC
T ss_pred             CCEEEECCCCc
Confidence            99999999853

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.05  E-value=0.0013  Score=48.10  Aligned_cols=99  Identities=15%  Similarity=0.039  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCH-HHHHHhc-----CC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQ-DEMQAAM-----GT  106 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~-~~~~~~~-----~~  106 (220)
                      ..++.+||-+|+|. |..+..+++..  +.+|+.++.+++..+.+.+.   .|..  ..+-..+. +.+....     +.
T Consensus        62 ~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (225)
T 3tr6_A           62 LMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQ  140 (225)
T ss_dssp             HHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred             hhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence            35778999999874 88888888876  46999999998766555433   3432  22222332 3343433     57


Q ss_pred             ccEEEEcCCCc---ccHHHHHhccccCCEEEEeCCC
Q 027664          107 MDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ||+|+-.....   ..+..+.+.|++||.++.....
T Consensus       141 fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          141 YDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            99998433322   2367788999999999876543

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.05  E-value=0.00092  Score=52.20  Aligned_cols=72  Identities=11%  Similarity=0.016  Sum_probs=49.5

Q ss_pred             EEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCCCEE-EcCCC-HHHHHHhcCCccEEEEcCCC
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSF-LVSRD-QDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~-~~~~~~~~~~~d~v~d~~g~  116 (220)
                      +|||.|+ |.+|..+++.+... |.+|++++++..+...+....+...+ .|..+ .+.+.+...++|+||.+++.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~~   77 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcccc
Confidence            6899997 99999999888777 89999999987654433211122222 23333 23455555589999999874

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.04  E-value=0.0009  Score=49.53  Aligned_cols=68  Identities=19%  Similarity=0.199  Sum_probs=48.0

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhc------CCccEEEEcCC
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM------GTMDGIIDTVS  115 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~d~v~d~~g  115 (220)
                      ++++||.|+ |.+|..+++.+...|++|++++++.+ .+    .+ .-...|..+.+.++++.      +++|++++++|
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~~----~~-~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag   75 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-GE----DL-IYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   75 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-SS----SS-EEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-cc----ce-EEEeCCCCCHHHHHHHHHHHHhhCCceEEEEccc
Confidence            578999997 99999999888778999999998864 11    11 01223555655444332      37999999987


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        76 ~   76 (242)
T 1uay_A           76 V   76 (242)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.04  E-value=0.021  Score=45.32  Aligned_cols=132  Identities=14%  Similarity=0.089  Sum_probs=78.1

Q ss_pred             CEEEEEccchhHHHHHHHHHH--------CCCeEEEEeC-CccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           44 MHVGVVGLGGLGHVAVKFAKA--------MGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~--------~g~~vi~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      =+|-|+|+|.+|..-+...+.        -+++++.++. ++++.+.+.+++|...++  .+.+++.+ ...+|+|+-|+
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y--~d~~ell~-~~~iDaV~Iat  102 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKAT--ADWRALIA-DPEVDVVSVTT  102 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEE--SCHHHHHH-CTTCCEEEECS
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeec--CCHHHHhc-CCCCcEEEECC
Confidence            368999999999865543332        2567776654 556677788889987664  34333222 13799999999


Q ss_pred             CCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhh-------hcCCe-EEEEEecCCHHHHHHHHHHHHcCCCcc
Q 027664          115 SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL-------LTGRK-IVGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       115 g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~i~~g~i~~  182 (220)
                      ......+.+..+++.|-. |++   ..+...+....       -.++. ...++..+....++.+.+++++|.+-.
T Consensus       103 P~~~H~~~a~~al~aGkh-Vl~---EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i~~G~iG~  174 (393)
T 4fb5_A          103 PNQFHAEMAIAALEAGKH-VWC---EKPMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGDGVIGR  174 (393)
T ss_dssp             CGGGHHHHHHHHHHTTCE-EEE---CSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHHHTTTTCS
T ss_pred             ChHHHHHHHHHHHhcCCe-EEE---ccCCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHHHcCCCcc
Confidence            988778888888877555 444   44444333221       11222 223332222244556666666666553

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.03  E-value=0.0034  Score=48.29  Aligned_cols=87  Identities=20%  Similarity=0.177  Sum_probs=61.6

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH---
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL---  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~---  120 (220)
                      .+|.|+|.|.+|...++.+...|.+|++.++++++.+.+. +.|+..   ..+   ..+... .|+||-|++.+...   
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~---~~~---~~~~~~-aDvvi~~vp~~~~~~~v   87 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLA-EAGATL---ADS---VADVAA-ADLIHITVLDDAQVREV   87 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHH-HTTCEE---CSS---HHHHTT-SSEEEECCSSHHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-HCCCEE---cCC---HHHHHh-CCEEEEECCChHHHHHH
Confidence            4699999999999999988888999999999988877774 456532   112   334445 89999999865333   


Q ss_pred             -HHHHhccccCCEEEEeCC
Q 027664          121 -MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 -~~~~~~l~~~G~~v~~g~  138 (220)
                       ......++++..++..+.
T Consensus        88 ~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           88 VGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             HHHHHTTCCTTCEEEECSC
T ss_pred             HHHHHHhcCCCCEEEEeCC
Confidence             334455666666666543

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=97.02  E-value=0.0018  Score=50.15  Aligned_cols=83  Identities=19%  Similarity=0.251  Sum_probs=53.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..+++.++.+|.+|++.+++.++..       .    ...+   +.+.....|+|+-++....   
T Consensus       143 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-------~----~~~~---l~ell~~aDvV~l~~p~~~~t~  208 (311)
T 2cuk_A          143 QGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP-------Y----PFLS---LEELLKEADVVSLHTPLTPETH  208 (311)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-------S----CBCC---HHHHHHHCSEEEECCCCCTTTT
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc-------c----ccCC---HHHHHhhCCEEEEeCCCChHHH
Confidence            578899999999999999999999999999988765321       1    1112   2222234567766654421   


Q ss_pred             -cH-HHHHhccccCCEEEEeCC
Q 027664          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g~  138 (220)
                       .+ ...+..++++..++.++.
T Consensus       209 ~li~~~~l~~mk~ga~lin~sr  230 (311)
T 2cuk_A          209 RLLNRERLFAMKRGAILLNTAR  230 (311)
T ss_dssp             TCBCHHHHTTSCTTCEEEECSC
T ss_pred             hhcCHHHHhhCCCCcEEEECCC
Confidence             12 134556666666666543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.02  E-value=0.0018  Score=48.88  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=59.0

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCe-EEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~-vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  122 (220)
                      .+|.|+|+|.+|...++.+...|.+ |.+.++++++.+.+.+.+|....   .+   ..+.....|+||.|+.... ...
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~---~~---~~~~~~~~Dvvi~av~~~~-~~~   83 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYT---TD---LAEVNPYAKLYIVSLKDSA-FAE   83 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEE---SC---GGGSCSCCSEEEECCCHHH-HHH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCcee---CC---HHHHhcCCCEEEEecCHHH-HHH
Confidence            4699999999999998887777887 88888888777777666675422   11   1122347899999998763 343


Q ss_pred             HHh----ccccCCEEEEeC
Q 027664          123 LIG----LLKSQGKLVLLG  137 (220)
Q Consensus       123 ~~~----~l~~~G~~v~~g  137 (220)
                      .+.    .++++..++.+.
T Consensus        84 v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           84 LLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             HHHHHHTTCCTTCEEEECC
T ss_pred             HHHHHHhhcCCCcEEEECC
Confidence            333    344555565554

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.02  E-value=0.0015  Score=48.03  Aligned_cols=96  Identities=21%  Similarity=0.173  Sum_probs=62.3

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCC-CEEEcCCCHHHHHHhc-CCccEEEEcC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA-DSFLVSRDQDEMQAAM-GTMDGIIDTV  114 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~-~~~~~~~~~~~~~~~~-~~~d~v~d~~  114 (220)
                      ++++++||-+|+|..|..+..+++..+.+|+.++.++...+.+.+.   .+. -.++..+ ......+. +.||+|+-..
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d-~~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSN-GGIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECS-SCSSTTTCCSCEEEEEECC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCC-chhhhhcccCceeEEEECC
Confidence            5789999999999668888888887678999999998766555433   332 1222211 11111122 4799998331


Q ss_pred             CC-------------------------cccHHHHHhccccCCEEEEe
Q 027664          115 SA-------------------------VHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       115 g~-------------------------~~~~~~~~~~l~~~G~~v~~  136 (220)
                      .-                         ...+..+.+.|+++|+++.+
T Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            10                         12366777889999998875

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.01  E-value=0.0018  Score=49.45  Aligned_cols=93  Identities=17%  Similarity=0.143  Sum_probs=61.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHc----CC----------CEEEcCCC-HHHHHHhc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL----GA----------DSFLVSRD-QDEMQAAM  104 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~----g~----------~~~~~~~~-~~~~~~~~  104 (220)
                      .++.+||++|+|. |..+..+++. +. +|++++.++...+.+.+.+    +.          ..-+...+ .+.+.. .
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~  150 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-N  150 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-C
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-c
Confidence            5678999999874 7777777777 65 9999999987666665544    21          11111222 223333 4


Q ss_pred             CCccEEEEcCCC----------cccHHHHHhccccCCEEEEe
Q 027664          105 GTMDGIIDTVSA----------VHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       105 ~~~d~v~d~~g~----------~~~~~~~~~~l~~~G~~v~~  136 (220)
                      +.||+|+--...          ...++.+.+.|+++|.++..
T Consensus       151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~  192 (281)
T 1mjf_A          151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  192 (281)
T ss_dssp             CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            579998743321          22467888999999999875

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.00  E-value=0.0005  Score=52.06  Aligned_cols=71  Identities=20%  Similarity=0.245  Sum_probs=49.3

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHh-------cCCccEEEE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.++.... ..    ...|..+.+.+.++       .+++|++++
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~-~~----~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD-LH----LPGDLREAAYADGLPGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCS-EE----CCCCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhh-hc----cCcCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            35789999997 9999999998888899999998876543221 01    11244444333222       248999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus       101 nAg~  104 (266)
T 3uxy_A          101 NAGV  104 (266)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9985

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.00  E-value=0.00077  Score=51.34  Aligned_cols=69  Identities=19%  Similarity=0.203  Sum_probs=50.9

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCC-ccEEEEcCCC
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGT-MDGIIDTVSA  116 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~-~d~v~d~~g~  116 (220)
                      +.+|||.|+|.+|..+++.+...|.+|++++++.++..     .+...+ .|..+.+.+.++..+ +|+||.+++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~   73 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP-----AGVQTLIADVTRPDTLASIVHLRPEILVYCVAA   73 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCC-----TTCCEEECCTTCGGGCTTGGGGCCSEEEECHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccc-----cCCceEEccCCChHHHHHhhcCCCCEEEEeCCC
Confidence            45799999999999999988888999999999876521     233333 355555555555444 9999999864

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.00  E-value=0.00082  Score=49.98  Aligned_cols=70  Identities=19%  Similarity=0.217  Sum_probs=48.3

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE--EcCCCHHHHHHh-------c--CCcc
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF--LVSRDQDEMQAA-------M--GTMD  108 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~-------~--~~~d  108 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++++.++...      ....  .|..+.+.++++       .  +++|
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~------~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEAS------ASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSS------EEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhccC------CcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            45789999997 999999999888889999999988754321      0111  233333333322       1  4799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++++++|.
T Consensus        79 ~lv~~Ag~   86 (241)
T 1dhr_A           79 AILCVAGG   86 (241)
T ss_dssp             EEEECCCC
T ss_pred             EEEEcccc
Confidence            99999983

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.99  E-value=0.017  Score=45.01  Aligned_cols=130  Identities=12%  Similarity=0.077  Sum_probs=77.1

Q ss_pred             CEEEEEccchhHHHHHHHHHHC-CCeEEEE-eCCccchHHHHHHcCCCEEEcCCCHHHHHHhcC--CccEEEEcCCCccc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAM-GVKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSAVHP  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~-g~~vi~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~d~v~d~~g~~~~  119 (220)
                      -++.|+|+|.+|...+..++.. +++++.+ +++.++.+.+.+.+|....+  .+   .+++..  .+|+|+.|+.....
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~--~~---~~~ll~~~~~D~V~i~tp~~~h   80 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAY--DK---LEDMLADESIDVIYVATINQDH   80 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEE--SC---HHHHHTCTTCCEEEECSCGGGH
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCccc--CC---HHHHhcCCCCCEEEECCCcHHH
Confidence            3688999999998877666554 5677755 55556666666667765333  23   233332  79999999998877


Q ss_pred             HHHHHhccccCCEEEEeCCCCCCCCCCchh---h----hcCCeE-EEEEecCCHHHHHHHHHHHHcCCCcc
Q 027664          120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTGRKI-VGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~~~-~~~~~~~~~~~~~~~~~~i~~g~i~~  182 (220)
                      .+.+..++..|-.++ +.   .+...+...   +    -.++.. +.++.......++.+.+++.+|.+-.
T Consensus        81 ~~~~~~al~aGk~Vl-~E---KP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~g~iG~  147 (329)
T 3evn_A           81 YKVAKAALLAGKHVL-VE---KPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEIGE  147 (329)
T ss_dssp             HHHHHHHHHTTCEEE-EE---SSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHCCCeEE-Ec---cCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHhCCCCCC
Confidence            777788887765544 32   233332221   1    122332 33433333455677777888877753

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=96.99  E-value=0.0007  Score=51.11  Aligned_cols=105  Identities=16%  Similarity=0.067  Sum_probs=66.7

Q ss_pred             HHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC--EEEcCCCHHHHHHhcCCc
Q 027664           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~--~~~~~~~~~~~~~~~~~~  107 (220)
                      ++.....++++.+||-+|+|. |..+..+++..+.+|++++.++...+.+.+.   .|..  .-+...+...+....+.|
T Consensus        37 ~l~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  115 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIGCGT-GGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEEL  115 (267)
T ss_dssp             HHTTCCCCCTTCEEEEETCTT-CHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCE
T ss_pred             HHHhcccCCCCCEEEEeCCCC-CHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCE
Confidence            344444467899999999984 8888888888556999999998766555433   2321  111111111111012379


Q ss_pred             cEEEEcCC-----CcccHHHHHhccccCCEEEEeCC
Q 027664          108 DGIIDTVS-----AVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       108 d~v~d~~g-----~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      |+|+-.-.     ....+..+.+.|++||+++....
T Consensus       116 D~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          116 DLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             EEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEe
Confidence            99984322     22346788899999999987653

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=96.99  E-value=0.0015  Score=50.73  Aligned_cols=71  Identities=18%  Similarity=0.277  Sum_probs=50.8

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc--CCCEE-EcCCCHHHHHHhcC--CccEEEEcCCCc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--GADSF-LVSRDQDEMQAAMG--TMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~--g~~~~-~~~~~~~~~~~~~~--~~d~v~d~~g~~  117 (220)
                      .+|||.|+ |.+|..+++.+...|.+|+++++......   +.+  +...+ .|..+.+.+.+...  ++|+||.+++..
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~   78 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE---DAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADS   78 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---GGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch---hhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCccc
Confidence            46999997 99999999988888999999987654322   122  23222 35556666666554  899999999853

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.98  E-value=0.003  Score=48.16  Aligned_cols=76  Identities=17%  Similarity=0.136  Sum_probs=55.7

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCC---eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGV---KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~---~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      .+|.|+|+|.+|...++.+...|.   +|++.++++++.+.+.+.+|....   .+   ..+.....|+||-|+... .+
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~---~~---~~~~~~~aDvVilav~p~-~~   76 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTT---QD---NRQGALNADVVVLAVKPH-QI   76 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEE---SC---HHHHHSSCSEEEECSCGG-GH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEe---CC---hHHHHhcCCeEEEEeCHH-HH
Confidence            568999999999999998888887   899999999888888766776432   11   223335789999999654 45


Q ss_pred             HHHHhc
Q 027664          121 MPLIGL  126 (220)
Q Consensus       121 ~~~~~~  126 (220)
                      ...++.
T Consensus        77 ~~vl~~   82 (280)
T 3tri_A           77 KMVCEE   82 (280)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.97  E-value=0.011  Score=47.49  Aligned_cols=134  Identities=16%  Similarity=0.102  Sum_probs=84.1

Q ss_pred             CEEEEEccch---hHHHHHHHHHHCC-CeEEE-E-eCCccchHHHHHHcCCC--EEEcCCCHHHHHHhc----CCccEEE
Q 027664           44 MHVGVVGLGG---LGHVAVKFAKAMG-VKVTV-I-STSPSKKSEAVERLGAD--SFLVSRDQDEMQAAM----GTMDGII  111 (220)
Q Consensus        44 ~~vlI~G~g~---~G~~~~~la~~~g-~~vi~-~-~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~----~~~d~v~  111 (220)
                      -+|.|+|+|.   +|...+..++..+ ++++. + ++++++.+.+.+.+|..  .+  +.+.+.+.+..    ..+|+|+
T Consensus        13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~--~~~~~~ll~~~~~~~~~vD~V~   90 (398)
T 3dty_A           13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERC--YADYLSMFEQEARRADGIQAVS   90 (398)
T ss_dssp             EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGB--CSSHHHHHHHHTTCTTCCSEEE
T ss_pred             ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCccee--eCCHHHHHhcccccCCCCCEEE
Confidence            4789999998   9988877666655 57775 4 56666777777888874  33  34544433321    3699999


Q ss_pred             EcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchh---h----hcCCeE-EEEEecCCHHHHHHHHHHHHcCCCccc
Q 027664          112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP---L----LTGRKI-VGGSLIGGLKETQEMIDFAAKHNIRAD  183 (220)
Q Consensus       112 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~~~-~~~~~~~~~~~~~~~~~~i~~g~i~~~  183 (220)
                      -|+......+.+..+++.|-.+ ++   ..+...+...   +    -.++.. ..++.......++.+.+++++|.+-..
T Consensus        91 i~tp~~~H~~~~~~al~aGkhV-l~---EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~G~iG~i  166 (398)
T 3dty_A           91 IATPNGTHYSITKAALEAGLHV-VC---EKPLCFTVEQAENLRELSHKHNRIVGVTYGYAGHQLIEQAREMIAAGELGDV  166 (398)
T ss_dssp             EESCGGGHHHHHHHHHHTTCEE-EE---CSCSCSCHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHHHTTTTCSE
T ss_pred             ECCCcHHHHHHHHHHHHCCCeE-EE---eCCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCCCCe
Confidence            9999887788888888876554 44   3344433321   1    122332 333333333456777788888877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	2e-30
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	1e-29
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	7e-20
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	2e-19
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	1e-18
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	4e-18
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	5e-18
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	3e-17
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	5e-17
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	8e-16
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	1e-15
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	7e-15
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	8e-15
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	8e-14
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	1e-10
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	4e-09
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	7e-08
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	2e-07
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	2e-06
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	3e-06
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	8e-06
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	9e-06
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-05
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	2e-05
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	4e-05
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	1e-04
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	2e-04
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	3e-04
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	4e-04
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	5e-04
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	0.001
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	0.001
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	0.002

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 5/169 (2%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS 75
           P    APLLC G+TVYSPL   G   PG  VG+VGLGG+G +    +KAM    T + + 
Sbjct: 2   PSHLAAPLLCGGLTVYSPLVRNGC-GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISR 59

Query: 76  PSKKSEAVERLGADSFLVSRDQDEM-QAAMGTMDGIIDTVSAVHPLMP--LIGLLKSQGK 132
            S+K E   ++GAD ++ + ++ +  +    T D I+   S++  +    +   +K  G+
Sbjct: 60  SSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGR 119

Query: 133 LVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIR 181
           +V +  PE+   L   P       +  S +G +KE  +++   ++ +I+
Sbjct: 120 IVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKDIK 168

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score =  106 bits (264), Expect = 1e-29
 Identities = 84/170 (49%), Positives = 108/170 (63%), Gaps = 4/170 (2%)

Query: 12  PEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTV 71
           P+   L A APLLCAGIT YSPLR +    PG  VGVVG+GGLGH+ +K A AMG  V  
Sbjct: 2   PQ-EQLAAVAPLLCAGITTYSPLRHWQA-GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVA 59

Query: 72  ISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQG 131
             T+   K EA + LGAD  + SR+ DEM A + + D I++TV+A H L     LLK  G
Sbjct: 60  F-TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDG 118

Query: 132 KLVLLGAPEKPLELP-AFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNI 180
            + L+GAP  P + P  F L+  R+ + GS+IGG+ ETQEM+DF A+H I
Sbjct: 119 TMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGI 168

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 80.9 bits (198), Expect = 7e-20
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 5/165 (3%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS 75
                AP+LCAG+TVY  L+     +PG  V + G+GGLGHVAV++A+AMG+ V  I   
Sbjct: 2   EFAEIAPILCAGVTVYKGLKQTNA-RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID 60

Query: 76  PSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG---IIDTVSAVHPLMPLIGLLKSQGK 132
            +K  E   +LGA   + +R +D ++A    + G   ++ T  +       IG+ +  G 
Sbjct: 61  DAKL-ELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGT 119

Query: 133 LVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK 177
           + L+G P      P F ++     + GS++G   + QE +DFA +
Sbjct: 120 IALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEALDFAGE 164

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 79.4 bits (194), Expect = 2e-19
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 3/168 (1%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS 75
             +  AP+ CAG+T Y  L+  G  KPG  V + G+GGLGHVAV++AKAMG+ V  +   
Sbjct: 2   SFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG 60

Query: 76  PSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGI--IDTVSAVHPLMPLIGLLKSQGKL 133
             K   A E          ++                + T  +          ++  G  
Sbjct: 61  DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGAC 120

Query: 134 VLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIR 181
           VL+G P + + +P F  +     + GS++G  K+ QE + FAA+  ++
Sbjct: 121 VLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVK 168

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 77.7 bits (190), Expect = 1e-18
 Identities = 36/171 (21%), Positives = 62/171 (36%), Gaps = 8/171 (4%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           A L+    + C   + Y          PG    V GLG +G  A+   K  G    +   
Sbjct: 1   ANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID 60

Query: 75  SPSKKSEAVERLGADSFLVSRDQDEMQAAM------GTMDGIIDTVSAVHPLMPLI-GLL 127
              +K    + LGA   L  R+ D+    +      G +D  +D       L   +   +
Sbjct: 61  INGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV 120

Query: 128 KSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
              G   ++GA    + +P   ++ GR I  G+  GG K    + +  + +
Sbjct: 121 LGWGSCTVVGAKVDEMTIPTVDVILGRSIN-GTFFGGWKSVDSVPNLVSDY 170

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 76.5 bits (187), Expect = 4e-18
 Identities = 35/173 (20%), Positives = 64/173 (36%), Gaps = 11/173 (6%)

Query: 17  LDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP 76
           LD  A  +C+G T Y     Y     G  V + G G LG   V  A+++G +  ++    
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62

Query: 77  SKKSEAVERLGADSFLVSRDQDEMQAAMGTM--------DGIIDTVSAVHPLMPLIGLLK 128
             + +  E +GAD  L  R+    +     M        D I++       L+    LL+
Sbjct: 63  PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR 122

Query: 129 SQGKLVLLG--APEKPLELPAFPLLTGRKI-VGGSLIGGLKETQEMIDFAAKH 178
             G   + G   P+ P+    +  L  +     G  +       + +   +++
Sbjct: 123 RGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRN 175

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 76.1 bits (186), Expect = 5e-18
 Identities = 46/174 (26%), Positives = 64/174 (36%), Gaps = 13/174 (7%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           APL++   + C   T Y          PG    V GLGG+G  A+   KA G    +   
Sbjct: 1   APLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG 59

Query: 75  SPSKKSEAVERLGADSFLVSRDQDEMQAAM-------GTMDGIIDTVSAVHPLMPLIGLL 127
           +   K      LGA   L  +D D+    +       G    +         +  L    
Sbjct: 60  THKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTY 119

Query: 128 KSQGKLVLLGAP--EKPLELPAFPLLTGRKIVGGSLIGGLK--ETQEMIDFAAK 177
              G  V+LG     + L L    LLTGR +  GS+ GG K  E   ++D   K
Sbjct: 120 CGSGVTVVLGLASPNERLPLDPLLLLTGRSLK-GSVFGGFKGEEVSRLVDDYMK 172

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 73.8 bits (180), Expect = 3e-17
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 7/172 (4%)

Query: 11  IPEGAPLDATAPLLCAGITVYSPLRFYGLD-KPGMHVGVVGLGGLGHVAVKFAKAMGVKV 69
           I     ++  APL  AGIT Y  ++       PG +V +VG+GGLGH+AV+  K M    
Sbjct: 1   ISREKLVEM-APLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPAT 59

Query: 70  TVISTSPSKKSEAVERLGADSFLVSRDQDE----MQAAMGTMDGIIDTVSAVHPLMPLIG 125
            +      +K +  ERLGAD  + +R               ++  +D V +   +     
Sbjct: 60  VIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPY 119

Query: 126 LLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK 177
           LL   G+L+++G   +    P   +++      GSL+G   E  E++  A +
Sbjct: 120 LLGRMGRLIIVGYGGELRF-PTIRVISSEVSFEGSLVGNYVELHELVTLALQ 170

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 73.4 bits (179), Expect = 5e-17
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 9/171 (5%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS 75
           P++   PL C   T            P       G G +G  A+  AK  G  + +    
Sbjct: 2   PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61

Query: 76  PSKKSEAVERLGADSFLVSRDQDEMQAAM----GTMDGIIDTVSAVHPLMPLIGLLKSQG 131
              + E  ++LGA   + S+ QD + A      G ++  +++  +   L   +  L   G
Sbjct: 62  VESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILG 121

Query: 132 KLVLLGAPEKP--LELPAFPLLTGRKIVGGSLIGGLK---ETQEMIDFAAK 177
           K+ ++GAP+     +     LL G K + G + G         E++    +
Sbjct: 122 KIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQ 172

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 70.4 bits (171), Expect = 8e-16
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 8/165 (4%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           +PL+    + C   T Y           G    V GLGG+G   +   KA G    +   
Sbjct: 1   SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD 60

Query: 75  SPSKKSEAVERLGADSFLVSRDQDE------MQAAMGTMDGIIDTVSAVHPLMPLIGLLK 128
               K    + +GA   +  +D  +       + + G +D   + +  +  ++  +   +
Sbjct: 61  INKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQ 120

Query: 129 SQG--KLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEM 171
                 +++   P+         LL   +   G++ GG K    +
Sbjct: 121 EAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSV 165

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 69.7 bits (169), Expect = 1e-15
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 7/164 (4%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           APLD    L C   T +         +PG    V GLG +G  AV    + G K  +   
Sbjct: 1   APLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD 60

Query: 75  SPSKKSEAVERLGADSFLVSRDQDE------MQAAMGTMDGIIDTVSAVHPLMPLIGL-L 127
               K E  +  GA  F+   D  E       +   G +D  ++ V  V  +   +   L
Sbjct: 61  LNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCL 120

Query: 128 KSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEM 171
           K  G  VL+G  +          L   +   GS+ GG K    +
Sbjct: 121 KGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGV 164

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 67.6 bits (164), Expect = 7e-15
 Identities = 37/166 (22%), Positives = 57/166 (34%), Gaps = 10/166 (6%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           AP +    + C   T Y      G  KPG    V GLGG+G   +   K+ G    +   
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 75  SPSKKSEAVERLGADSFLVSRDQDEMQAAMGT-------MDGIIDTVSAVHPLMPLIGLL 127
               K E    +GA   +  +D  +  + + +                    +  L    
Sbjct: 62  LNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCH 121

Query: 128 KSQGKLVLLGAPEKP--LELPAFPLLTGRKIVGGSLIGGLKETQEM 171
            + G  V++G P     L      L TGR    G + GGLK   ++
Sbjct: 122 MNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWK-GCVFGGLKSRDDV 166

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 8e-15
 Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 10/173 (5%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           APLD    L C   T Y         +PG    V GLGG+G   +   K  G    +   
Sbjct: 1   APLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60

Query: 75  SPSKKSEAVERLGADSFLVSRDQDE------MQAAMGTMDGIIDTVSAVHPLMPLIGLLK 128
               K    +  GA   +  +D  +      ++   G +D   + +  V  +   +    
Sbjct: 61  INKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH 120

Query: 129 ---SQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
                  +V + A  + +    F L+TGR    G+  GG K  + +    +++
Sbjct: 121 KGWGVSVVVGVAASGEEIATRPFQLVTGRTWK-GTAFGGWKSVESVPKLVSEY 172

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 64.8 bits (156), Expect = 8e-14
 Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 8/168 (4%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVIST 74
            ++A APL C+GIT Y  +R   L  P   + VVG  GGLG +AV+ AKA+     +   
Sbjct: 3   AVEA-APLTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVD 60

Query: 75  SPSKKSEAVERLGADSFLVSRDQDEMQA-----AMGTMDGIIDTVSAVHPLMPLIGLLKS 129
              +  EA +R GAD  + +  QD +           +D +ID  ++   L      L  
Sbjct: 61  VREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAK 120

Query: 130 QGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAK 177
           QGK V++G     L   A  +        GSL+G   +   ++  A  
Sbjct: 121 QGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEA 168

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 56.1 bits (134), Expect = 1e-10
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 10/166 (6%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS 75
           PL+    +     T +       + + G  V V+G+G +G + +  AK  G    +   S
Sbjct: 2   PLENAVMITDMMTTGFHGAELADI-EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60

Query: 76  PSKKSEAVERLGADSFLVSRDQDEMQAAMGT-----MDGIIDTVSAVHPLMPLIGLLKSQ 130
                EA +  GA   L  ++       M       +D +I        L   + ++K  
Sbjct: 61  RPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG 120

Query: 131 GKLVLLGAPEKPLELP----AFPLLTGRKIVGGSLIGGLKETQEMI 172
           G +  +        L      +      K + G L  G +   E +
Sbjct: 121 GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERL 166

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 52.2 bits (124), Expect = 4e-09
 Identities = 6/64 (9%), Positives = 14/64 (21%), Gaps = 5/64 (7%)

Query: 3   ADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFA 62
             +  ++++P+         +               LD      G    G      +   
Sbjct: 142 YADFNLLKLPDRDKAMEKINIAEVVGVQV-----ISLDDAPRGYGEFDAGVPKKFVIDPH 196

Query: 63  KAMG 66
           K   
Sbjct: 197 KTFS 200

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 48.5 bits (114), Expect = 7e-08
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 4/159 (2%)

Query: 21  APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS 80
           A    + +T Y  L+     +PG  V V    G    A            + + S  +K 
Sbjct: 7   AAFPVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL 65

Query: 81  EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE 140
                LGA+      +  E   A G +D +++       +   +GLL   G+LV +GA E
Sbjct: 66  ALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KEVEESLGLLAHGGRLVYIGAAE 123

Query: 141 -KPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
            +   +P   L+     V G  +  L     +++ A   
Sbjct: 124 GEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGF 162

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 35/173 (20%), Positives = 62/173 (35%), Gaps = 19/173 (10%)

Query: 13  EGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVI 72
           EGA      PL           R  G+ + G  V V+G G +G V+V  AKA      V 
Sbjct: 5   EGA---LLEPLSVG----VHACRRAGV-QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVC 55

Query: 73  STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTM---------DGIIDTVSAVHPLMPL 123
           +    ++ E  +  GAD  LV     E ++++            +  ID       +   
Sbjct: 56  TARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIG 115

Query: 124 IGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAA 176
           I + ++ G L+L+G   + + +P          +         +    ++  A
Sbjct: 116 INITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSV-FRYCNDYPIALEMVA 167

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 8/165 (4%)

Query: 21  APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAVKFAKAMGVKVTVISTSPSKK 79
           A     G+TVY  LR     KP          G +G +A ++AKA+G K+     +  K 
Sbjct: 7   AASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA 66

Query: 80  SEAVERLGADSFLVSRDQDEMQAAM----GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVL 135
             A++  GA   +  R++D ++       G    ++            +  L+ +G +V 
Sbjct: 67  QSALKA-GAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVS 125

Query: 136 LGAP--EKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKH 178
            G                 G   V    + G   T+E +  A+  
Sbjct: 126 FGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNE 170

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 7/71 (9%), Positives = 18/71 (25%), Gaps = 25/71 (35%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            ++ E+  V++ +  P D                                   +   A+ 
Sbjct: 146 ALSRENNTVKVTKDFPFDQLVKFYAF-------------------------DEINQAAID 180

Query: 61  FAKAMGVKVTV 71
             K + +K  +
Sbjct: 181 SRKGITLKPII 191

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 8e-06
 Identities = 27/159 (16%), Positives = 53/159 (33%), Gaps = 7/159 (4%)

Query: 21  APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS 80
           A +     T Y  L      K G  V V G  G   +A            + +    +  
Sbjct: 7   AAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ 66

Query: 81  EAVERLGADSFLVSRDQDEMQAAMGTM----DGIIDTVSAVHPLMPLIGLLKSQGKLVLL 136
           + V + GA      R+ + +      +      II  + A   L   + LL   G+++++
Sbjct: 67  KIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVV 126

Query: 137 GAPEKPLELPAFPLLTGRKIVGGSLIGG--LKETQEMID 173
           G+    +E+     +     + G  +     +E Q+   
Sbjct: 127 GSRG-TIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAA 164

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 9e-06
 Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 8/147 (5%)

Query: 41  KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM 100
             G  V V G G +G V +  AKAMG    V++   + +    + +GAD  L    +   
Sbjct: 25  TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQ 84

Query: 101 QAAM-------GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG 153
           + A           +  I+   A   +   I   +S G LVL+G   +   +P       
Sbjct: 85  EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIR 144

Query: 154 RKIVGGSLIGGLKETQEMIDFAAKHNI 180
              + G            I   A  ++
Sbjct: 145 EVDIKGV-FRYCNTWPVAISMLASKSV 170

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 8/46 (17%), Positives = 13/46 (28%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHV 46
            V ++  V +I     LD          +V   +      K    V
Sbjct: 151 TVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTV 196

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 3/49 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV 49
            V  +  V +I     +D       +   +        L   G  +  V
Sbjct: 149 TVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFE---LMHSGKSIRTV 194

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGI-TVYSPLRFYGLDKPGMHVGV 48
           +   EHFVV IPE   ++   P+  AG+   +  +    + +    +  
Sbjct: 139 VRVHEHFVVPIPENIWVET-LPVGEAGVHEAFERMEKGDV-RYRFTLVG 185

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 3/50 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG 50
            V  E  + R+ +   LD          ++   +    L K G  +  + 
Sbjct: 154 TVVSEANLARVDDEFDLDLLVTHALPFESINDAID---LMKEGKSIRTIL 200

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 22/163 (13%), Positives = 45/163 (27%), Gaps = 15/163 (9%)

Query: 21  APLLCAGITVYSPLRFYGLDKPGMHVGVVGL--GGLGHVAVKFAKAMGVKVTVISTSPSK 78
           A +    +T Y  L  Y    PG    +       +G  A +  K +      +      
Sbjct: 7   ATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN 66

Query: 79  ---KSEAVERLGADSFLVSRDQDEMQ----------AAMGTMDGIIDTVSAVHPLMPLIG 125
                 +++ LGA   +     +  +           + G     ++ V           
Sbjct: 67  LDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARK 126

Query: 126 LLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKET 168
           L  +   L   G   +P+ +P    +       G  +  L + 
Sbjct: 127 LNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKN 169

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 10/178 (5%)

Query: 21  APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS 80
           A    A +T +  L   G   PG  V +    G   +A      M       +     K 
Sbjct: 4   ATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR 63

Query: 81  EAVERLGADSFLVSRDQDEMQAAMGTMDG----IIDTVSAVHPLMPLIGLLKSQGKLVLL 136
           E + RLG +    SR  D     +   DG    ++    A   +   + +L   G+ + L
Sbjct: 64  EMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIEL 123

Query: 137 GAPEKPLELPAFPLLTGRKI------VGGSLIGGLKETQEMIDFAAKHNIRADIEVIP 188
           G  +   +         +        +  +L       ++++    +H     +EV+P
Sbjct: 124 GKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLP 181

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 3/60 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
                 ++V +P+   L          I           + PG    ++     G V VK
Sbjct: 105 ASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSL---EETPGALKDILQNRIQGRVIVK 161

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 5/56 (8%), Positives = 11/56 (19%), Gaps = 10/56 (17%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGH 56
            V  +  V +I     ++           +               +   G G    
Sbjct: 150 TVVADIAVAKIDPKINVNFLVSTKLTLDQI----------NKAFELLSSGQGVRSI 195

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 14/161 (8%)

Query: 16  PLD-ATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVKFAKAMGVKVTVIS 73
           PL  A   +   G+T Y  L      K G  V V    G +G V  + AK  G KV   +
Sbjct: 2   PLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAA 61

Query: 74  TSPSKKSEAVERLGADSFLVSR----DQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKS 129
            S  K +   +     +F        ++   +A+    D   D V         +  +K 
Sbjct: 62  GSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTV-LSQMKD 120

Query: 130 QGKLVLLGA-------PEKPLELPAFPLLTGRKIVGGSLIG 163
            GK+ + GA        + P       ++  +  + G ++ 
Sbjct: 121 FGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVY 161

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV 49
           ++AD ++V  +P+          L     +   +R       G  V  +
Sbjct: 129 VLADPNYVGILPKNVKATIHPGKLDDINQILDQMR--AGQIEGRIVLEM 175

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG 50
             A   +VV+IP+   ++   PL          L+       G  V  + 
Sbjct: 124 CRAAADYVVKIPDNTIIEV-QPLEKINEVFDRMLKG---QINGRVVLTLE 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.98
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.97
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.97
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.97
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.97
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.97
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.97
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.97
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.96
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.96
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.96
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.96
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.96
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.96
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.96
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.96
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.95
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.95
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.95
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.95
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.94
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.94
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.94
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.94
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.93
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.92
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.91
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.61
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.87
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.66
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.61
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.52
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.4
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.36
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.31
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	98.3
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.3
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	98.27
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.25
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	98.22
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	98.22
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.18
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	98.17
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	98.16
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	98.16
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	98.16
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.14
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	98.14
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	98.13
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	98.12
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.11
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	98.1
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.08
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	98.07
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.07
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	98.06
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.03
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.02
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	98.01
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	98.0
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.99
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.98
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.97
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.97
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.95
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.94
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.93
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.93
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.92
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.91
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.91
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.91
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.9
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.9
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.89
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.88
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.88
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.85
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.85
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.84
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.84
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.83
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.82
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.82
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.81
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.78
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.78
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.78
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.78
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.77
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.76
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.76
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.74
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.74
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.73
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.72
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.71
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.69
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.66
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.65
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.64
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.64
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.63
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.63
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.61
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.61
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.59
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.59
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.57
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.57
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.55
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.55
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.54
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.54
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.52
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.51
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.49
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.48
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.45
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.45
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.45
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.41
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.41
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.4
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.39
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.35
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.35
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.33
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.3
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.29
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.28
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.27
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.24
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.22
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.21
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.19
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.19
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.18
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.17
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.17
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.17
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.14
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.11
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.09
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.08
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	97.08
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	97.08
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.08
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.08
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.05
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.03
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.02
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.02
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.01
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.01
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.0
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	96.99
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.99
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.98
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.97
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.97
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.96
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.93
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	96.91
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.89
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.89
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.87
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.85
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.83
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.83
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	96.81
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.79
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.76
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.75
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.71
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.7
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.67
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	96.66
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.65
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.65
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.64
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.64
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.63
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.61
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.61
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.6
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.59
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.55
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.53
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.52
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.52
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.51
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	96.51
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.48
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	96.47
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.47
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	96.47
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.43
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.41
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.4
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.39
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.37
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.3
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	96.3
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.3
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	96.29
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.28
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.28
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.25
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.24
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.22
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.21
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	96.19
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.15
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.14
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	96.14
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.14
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.12
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.12
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.11
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.08
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.08
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	96.08
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.06
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.05
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.04
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.02
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.01
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.01
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.01
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	95.99
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.97
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	95.96
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.96
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.95
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.95
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	95.95
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.94
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.93
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.92
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.91
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.89
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.89
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.89
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.84
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.83
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.8
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.8
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.8
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.79
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.78
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	95.78
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	95.72
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.7
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.69
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	95.69
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.68
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.67
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	95.66
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	95.64
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	95.63
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.62
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.61
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.58
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.55
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	95.54
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	95.53
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	95.53
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	95.48
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.46
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.46
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.38
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.38
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	95.38
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	95.37
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	95.36
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	95.32
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.28
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.26
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.25
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	95.24
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.21
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	95.2
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.17
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	95.17
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	95.17
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.15
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	95.14
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.04
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.03
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	94.97
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	94.96
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.95
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.91
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.89
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.75
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.66
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	94.65
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.61
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	94.59
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	94.56
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.53
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	94.49
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.46
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	94.45
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	94.4
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.39
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.38
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.36
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.34
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.33
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	94.31
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.3
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.26
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.24
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	94.24
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	94.22
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.19
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	94.15
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.13
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	94.12
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.1
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.06
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.97
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.95
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.91
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.89
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.74
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.71
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.71
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.68
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	93.65
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.6
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.54
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	93.53
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	93.5
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	93.48
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.47
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.45
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.41
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.38
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	93.37
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.36
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.31
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.29
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.05
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	93.05
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	93.03
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	92.9
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	92.88
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.8
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.64
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	92.61
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	92.55
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	92.49
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	92.43
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	92.42
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	92.41
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	92.27
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	92.15
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.99
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	91.98
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.93
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	91.88
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.86
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	91.7
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	91.53
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	91.52
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	91.44
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	91.39
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	91.32
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	91.12
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	91.11
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	91.06
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.01
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.89
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	90.89
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.87
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	90.84
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	90.76
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	90.76
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	90.65
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	90.6
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	90.0
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	89.91
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	89.74
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	89.39
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	89.22
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.11
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	88.97
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	88.86
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	88.79
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	88.79
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	88.65
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	88.6
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	88.51
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	88.5
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	88.3
d1ydhb_	181	Hypothetical protein At5g11950 {Thale cress (Arabi	88.27
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	88.24
d2q4oa1	183	Hypothetical protein At2g37210/T2N18.3 {Thale cres	88.16
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.08
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	88.08
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	87.6
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	87.48
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	87.3
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	86.89
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	86.54
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	86.29
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	86.19
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	86.03
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	86.02
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	85.49
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	85.15
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	85.05
d1jzta_	243	Hypothetical protein YNL200c (YNU0_YEAST) {Baker's	85.03
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	84.89
d2qy9a2	211	GTPase domain of the signal recognition particle r	84.48
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	84.36
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	84.09
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	83.82
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	83.77
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	83.69
d1zn7a1	178	Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]	83.66
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	83.48
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	83.46
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	83.38
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	82.98
d1okkd2	207	GTPase domain of the signal recognition particle r	82.97
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	82.83
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	82.72
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	82.69
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	82.54
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	81.98
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	81.69
d1t35a_	179	Hypothetical protein YvdD {Bacillus subtilis [TaxI	81.6
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	81.58
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	81.11
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	80.66
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	80.31
d2ayia1	406	Aminopeptidase T {Thermus thermophilus [TaxId: 274	80.19

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.6e-32  Score=192.20  Aligned_cols=164  Identities=33%  Similarity=0.549  Sum_probs=144.8

Q ss_pred             CccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCC
Q 027664           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSR   95 (220)
Q Consensus        16 s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~   95 (220)
                      |.+.||+++|++.|+|+++++.. +++|++|+|+|+|++|++++|+++++|++|++++.+++|++.+ +++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al~~~~-~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a-~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVRNG-CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDA-MKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHHTT-CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH-HHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhC-cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHh-hccCCcEEeecc
Confidence            34668899999999999998765 8999999999999999999999999999999999998887766 789999999876


Q ss_pred             CH-HHHHHhcCCccEEEEcCCCcc--cHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHH
Q 027664           96 DQ-DEMQAAMGTMDGIIDTVSAVH--PLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMI  172 (220)
Q Consensus        96 ~~-~~~~~~~~~~d~v~d~~g~~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (220)
                      ++ +..+...+++|+++||++...  .+..++++++++|+++.+|...++.+++..+++.+++++.|++.++.+++++++
T Consensus        80 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~~~e~l  159 (168)
T d1piwa2          80 EEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLL  159 (168)
T ss_dssp             GTSCHHHHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCCCCHHHHHHHH
T ss_pred             chHHHHHhhhcccceEEEEecCCccchHHHHHHHhhccceEEEeccccccccccHHHHHhCCcEEEEEeeCCHHHHHHHH
Confidence            54 344555669999999988643  477899999999999999988777888888999999999999999999999999


Q ss_pred             HHHHcCCCc
Q 027664          173 DFAAKHNIR  181 (220)
Q Consensus       173 ~~i~~g~i~  181 (220)
                      +++++|+|+
T Consensus       160 ~li~~gkIk  168 (168)
T d1piwa2         160 KLVSEKDIK  168 (168)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHhCCCC
Confidence            999999885

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.8e-31  Score=189.56  Aligned_cols=165  Identities=49%  Similarity=0.816  Sum_probs=142.7

Q ss_pred             CCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEc
Q 027664           14 GAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        14 ~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~   93 (220)
                      +.+++.+|+++|++.|+|+++++. ++++|++|+|+|+|++|++++|+|+++|+++++++.++++++. ++++|+++++|
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al~~~-~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~-a~~lGad~~i~   80 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPLRHW-QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREA-AKALGADEVVN   80 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHHTCSEEEE
T ss_pred             cccHHHHHHHHhHHHHHHHHHHHh-CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHH-HhccCCcEEEE
Confidence            456678889999999999999865 4899999999999999999999999999999999998887654 48999999999


Q ss_pred             CCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCCeEEEEEecCCHHHHHHHH
Q 027664           94 SRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRKIVGGSLIGGLKETQEMI  172 (220)
Q Consensus        94 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (220)
                      +.+.+......+++|++|||+|.+..+..++++++++|+++.+|...+. ..++...++.+++++.|++.++..++++++
T Consensus        81 ~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~~~d~~e~l  160 (168)
T d1uufa2          81 SRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEML  160 (168)
T ss_dssp             TTCHHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHH
T ss_pred             CchhhHHHHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeecCHHHHHHHH
Confidence            9887766555569999999999987899999999999999999986654 567888889999999999999999999999


Q ss_pred             HHHHcCCC
Q 027664          173 DFAAKHNI  180 (220)
Q Consensus       173 ~~i~~g~i  180 (220)
                      +++++++|
T Consensus       161 ~l~a~~~I  168 (168)
T d1uufa2         161 DFCAEHGI  168 (168)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHcCC
Confidence            99998765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=7.9e-32  Score=191.23  Aligned_cols=162  Identities=34%  Similarity=0.619  Sum_probs=145.4

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcC
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~   94 (220)
                      +|+++||+++|++.|||+++++.. +++|++|+|+|+|++|++++|++|.+|++|++++.++++++.+ +++|+++++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~~~-~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a-~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQTN-ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELA-RKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhh-hccCccccccc
Confidence            579999999999999999998865 8999999999999999999999999999999999998777655 78999999998


Q ss_pred             CCHHH---HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHH
Q 027664           95 RDQDE---MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEM  171 (220)
Q Consensus        95 ~~~~~---~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (220)
                      .+++.   +.+...+++.++++++..+.++.++++++++|+++.+|...++.+++..+++.|++++.|++.+++++++++
T Consensus        79 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~~~~~d~~e~  158 (166)
T d1llua2          79 RQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEA  158 (166)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHH
T ss_pred             cchhHHHHHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEecCCCccCCHHHHHhCCcEEEEEeecCHHHHHHH
Confidence            87544   344456888888888888789999999999999999998777788899999999999999999999999999


Q ss_pred             HHHHHcC
Q 027664          172 IDFAAKH  178 (220)
Q Consensus       172 ~~~i~~g  178 (220)
                      ++++++|
T Consensus       159 l~l~~~G  165 (166)
T d1llua2         159 LDFAGEG  165 (166)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHCc
Confidence            9999987

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=4.1e-31  Score=188.23  Aligned_cols=163  Identities=29%  Similarity=0.367  Sum_probs=145.2

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEE
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFL   92 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~   92 (220)
                      +|+.+||+++|++.|||+++++.. +++|++|+|+|+ |++|++++|++++.|. +|++++.++++++.+ +++|+++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~-~~~Ga~~~i   78 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRAGADYVI   78 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHHTCSEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHH-HHcCCceee
Confidence            478899999999999999998765 899999999996 9999999999999997 888888888776655 789999999


Q ss_pred             cCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHH
Q 027664           93 VSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKE  167 (220)
Q Consensus        93 ~~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (220)
                      ++++++   .+++.+.  ++|++|||+|+...++.++++++++|+++.+|...++.+++...++.+++++.|++.+++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs~~~~~~d  158 (170)
T d1jvba2          79 NASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSD  158 (170)
T ss_dssp             ETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECCSCCHHH
T ss_pred             ccCCcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHHHhCCcEEEEEecCCHHH
Confidence            987754   3444443  79999999999878899999999999999999888788999999999999999999999999


Q ss_pred             HHHHHHHHHcCC
Q 027664          168 TQEMIDFAAKHN  179 (220)
Q Consensus       168 ~~~~~~~i~~g~  179 (220)
                      ++++++++++|+
T Consensus       159 ~~~~l~lv~~GK  170 (170)
T d1jvba2         159 FLGIMRLAEAGK  170 (170)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCC
Confidence            999999999986

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=9.5e-31  Score=186.02  Aligned_cols=165  Identities=33%  Similarity=0.591  Sum_probs=148.5

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcC
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~   94 (220)
                      +|+++||++++++.|||++++... +++|++|+|+|+|++|++++|+++..|++|++++.++++++.+ +++|++.++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~~~-~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~-k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA-KELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHT-CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh-hhcCcceeccc
Confidence            589999999999999999999876 7999999999999999999999999999999999988776655 78999999998


Q ss_pred             CCHH---HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHH
Q 027664           95 RDQD---EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEM  171 (220)
Q Consensus        95 ~~~~---~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (220)
                      .+.+   .+++.+.+.|.+++++++...+..++++++++|+++.+|...++.+++..+++.+++++.|++.++.++++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~~~~~~  158 (168)
T d1rjwa2          79 LKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEA  158 (168)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHH
T ss_pred             ccchhhhhcccccCCCceEEeecCCHHHHHHHHHHhccCCceEecccccCCCCCCHHHHHHCCcEEEEEeeCCHHHHHHH
Confidence            7753   4556667777777888887789999999999999999998877788899999999999999999999999999


Q ss_pred             HHHHHcCCCc
Q 027664          172 IDFAAKHNIR  181 (220)
Q Consensus       172 ~~~i~~g~i~  181 (220)
                      ++++++|+++
T Consensus       159 l~l~~~Gkik  168 (168)
T d1rjwa2         159 LQFAAEGKVK  168 (168)
T ss_dssp             HHHHHTTSCC
T ss_pred             HHHHHhCCCC
Confidence            9999999885

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.97  E-value=2.6e-30  Score=184.53  Aligned_cols=164  Identities=21%  Similarity=0.265  Sum_probs=139.9

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEc
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~   93 (220)
                      ++++.|++++|++.|||+++.+..++++|++|+|+|+|++|++++|+++.+|+ +|++++.++++++. ++++|+++++|
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~-a~~~Ga~~~i~   79 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLEL-AKQLGATHVIN   79 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHH-HHHHTCSEEEE
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHH-HHHcCCeEEEe
Confidence            46788999999999999998887779999999999999999999999999999 55566666655554 57899999999


Q ss_pred             CCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchhhhcCCeEEEEEecCC---
Q 027664           94 SRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGRKIVGGSLIGG---  164 (220)
Q Consensus        94 ~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~---  164 (220)
                      +++++   .++++++ ++|++|||+|....++.+++.++++|+++.+|....  ..+++...++.+++++.|++.++   
T Consensus        80 ~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~  159 (174)
T d1f8fa2          80 SKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSP  159 (174)
T ss_dssp             TTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCH
T ss_pred             CCCcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCCCh
Confidence            88753   4556665 899999999998788999999999999999997543  46788899999999999997543   


Q ss_pred             HHHHHHHHHHHHcCC
Q 027664          165 LKETQEMIDFAAKHN  179 (220)
Q Consensus       165 ~~~~~~~~~~i~~g~  179 (220)
                      .++++++++++++|+
T Consensus       160 ~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         160 KKFIPELVRLYQQGK  174 (174)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCC
Confidence            577899999999985

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=1.8e-30  Score=184.43  Aligned_cols=165  Identities=18%  Similarity=0.227  Sum_probs=136.2

Q ss_pred             CCccccccccchhhhhhhHHH---hhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE
Q 027664           15 APLDATAPLLCAGITVYSPLR---FYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS   90 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~   90 (220)
                      +|++|||+++++++|||++++   ..+..++|++|||+|+ |++|.+++|+|+..|++|+++++++++.+.+ +++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~-~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL-RVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH-HHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHH-Hhcccce
Confidence            689999999999999997765   4566788999999996 9999999999999999999999998877655 7899999


Q ss_pred             EEcCCCHH--HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCCeEEEEE--ecCC
Q 027664           91 FLVSRDQD--EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRKIVGGS--LIGG  164 (220)
Q Consensus        91 ~~~~~~~~--~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~--~~~~  164 (220)
                      ++|+++..  .++...+ ++|+|||++|+. .+...+++|+++|+++.+|...+. .+++...++.|++++.|.  ...+
T Consensus        80 vi~~~~~~~~~~~~~~~~gvD~vid~vgg~-~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~~~~~  158 (176)
T d1xa0a2          80 VLAREDVMAERIRPLDKQRWAAAVDPVGGR-TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCP  158 (176)
T ss_dssp             EEECC---------CCSCCEEEEEECSTTT-THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCC
T ss_pred             eeecchhHHHHHHHhhccCcCEEEEcCCch-hHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEeCCcCC
Confidence            99987642  2222233 899999999988 699999999999999999997654 789999999999999995  4455


Q ss_pred             HHHHHHHHHHHHcCCCcc
Q 027664          165 LKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       165 ~~~~~~~~~~i~~g~i~~  182 (220)
                      .+....+.+.++ |+++|
T Consensus       159 ~~~~~~~~~~la-g~lkP  175 (176)
T d1xa0a2         159 MDLRLRIWERLA-GDLKP  175 (176)
T ss_dssp             HHHHHHHHHHHH-TTTCC
T ss_pred             HHHHHHHHHHHh-cccCC
Confidence            666777776664 77776

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-30  Score=185.65  Aligned_cols=161  Identities=21%  Similarity=0.274  Sum_probs=138.3

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEc
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~   93 (220)
                      +|+++||+++++++|||+++.+..++++|++|||+|+ |++|++++|+|+++|++|+++++++++++.+ +++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~-~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccc-cccCcccccc
Confidence            5899999999999999999988878999999999997 9999999999999999999999988766544 7899999999


Q ss_pred             CCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecC--CHH
Q 027664           94 SRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIG--GLK  166 (220)
Q Consensus        94 ~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  166 (220)
                      +++.+   .+++.++  ++|++|||+|++ .++.++++++++|+++.+|.. +..++++..++.+++++.|++.+  +.+
T Consensus        80 ~~~~~~~~~i~~~t~~~g~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~G~~-~~~~~~~~~~~~k~~~i~g~~~~~~~~~  157 (174)
T d1yb5a2          80 HREVNYIDKIKKYVGEKGIDIIIEMLANV-NLSKDLSLLSHGGRVIVVGSR-GTIEINPRDTMAKESSIIGVTLFSSTKE  157 (174)
T ss_dssp             TTSTTHHHHHHHHHCTTCEEEEEESCHHH-HHHHHHHHEEEEEEEEECCCC-SCEEECTHHHHTTTCEEEECCGGGCCHH
T ss_pred             cccccHHHHhhhhhccCCceEEeecccHH-HHHHHHhccCCCCEEEEEecC-CCCCCCHHHHHHCCCEEEEEEecCCCHH
Confidence            98764   3444444  799999999976 799999999999999999864 35678888899999999998754  467


Q ss_pred             HHHHHHHHHHcC
Q 027664          167 ETQEMIDFAAKH  178 (220)
Q Consensus       167 ~~~~~~~~i~~g  178 (220)
                      +++++.+++++|
T Consensus       158 ~~~~~~~~l~~g  169 (174)
T d1yb5a2         158 EFQQYAAALQAG  169 (174)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            788888777654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.97  E-value=9.8e-30  Score=181.24  Aligned_cols=161  Identities=30%  Similarity=0.449  Sum_probs=139.8

Q ss_pred             ccccccccchhhhhhhHHHhhc-CCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcC
Q 027664           17 LDATAPLLCAGITVYSPLRFYG-LDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        17 ~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~   94 (220)
                      +.++|+++++++|||+++.+.. .+++|++|+|+|+|++|++++|+++++|+ +|++++.+++|++ +++++|+++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~-~~~~~ga~~~i~~   84 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLK-LAERLGADHVVDA   84 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHH-HHHHTTCSEEEET
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHH-HHhhcccceeecC
Confidence            5688999999999999998875 47999999999999999999999999998 6677777776655 5578999999998


Q ss_pred             CCH--HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHH
Q 027664           95 RDQ--DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQE  170 (220)
Q Consensus        95 ~~~--~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (220)
                      .++  +...+.++  ++|++|||+|+...++.++++++++|+++.+|.. ++.+++...++.+++++.|++.+++.++++
T Consensus        85 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~-~~~~~~~~~l~~k~~~i~Gs~~~~~~d~~~  163 (172)
T d1h2ba2          85 RRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG-GELRFPTIRVISSEVSFEGSLVGNYVELHE  163 (172)
T ss_dssp             TSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCS-SCCCCCHHHHHHTTCEEEECCSCCHHHHHH
T ss_pred             cccHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCc-ccccCCHHHHHhCCcEEEEEEecCHHHHHH
Confidence            764  23444443  7999999999987899999999999999999964 457889999999999999999999999999


Q ss_pred             HHHHHHcCC
Q 027664          171 MIDFAAKHN  179 (220)
Q Consensus       171 ~~~~i~~g~  179 (220)
                      +++++++|+
T Consensus       164 ~l~l~~~GK  172 (172)
T d1h2ba2         164 LVTLALQGK  172 (172)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHcCC
Confidence            999999986

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=2.7e-29  Score=180.57  Aligned_cols=161  Identities=24%  Similarity=0.378  Sum_probs=138.0

Q ss_pred             ccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCC
Q 027664           17 LDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSR   95 (220)
Q Consensus        17 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~   95 (220)
                      ++.+|++.|++.|||+++.+...+++|++|||+|+|++|++++|+|+++|+ +|++++.++++++.+ +++|+++++|+.
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~   81 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEIGADLTLNRR   81 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHTTCSEEEETT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccc-ccccceEEEecc
Confidence            456788999999999999988888999999999999999999999999999 899999998877655 789999999987


Q ss_pred             CHH------HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC--CCCCCchh-hhcCCeEEEEEecCC
Q 027664           96 DQD------EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFP-LLTGRKIVGGSLIGG  164 (220)
Q Consensus        96 ~~~------~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~-~~~~~~~~~~~~~~~  164 (220)
                      +.+      .+.+.++  ++|+||||+|++..++.++++++++|+++.+|....  +.+++... ++.|++++.|++.++
T Consensus        82 ~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~  161 (182)
T d1vj0a2          82 ETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD  161 (182)
T ss_dssp             TSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC
T ss_pred             ccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCC
Confidence            642      2344443  799999999998788999999999999999997653  34455443 678999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 027664          165 LKETQEMIDFAAKH  178 (220)
Q Consensus       165 ~~~~~~~~~~i~~g  178 (220)
                      ..++++++++++++
T Consensus       162 ~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         162 TSHFVKTVSITSRN  175 (182)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHC
Confidence            99999999998875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.9e-29  Score=177.96  Aligned_cols=163  Identities=23%  Similarity=0.222  Sum_probs=140.0

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEc
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~   93 (220)
                      +|+++||.+ .++.+||+++++.. +++|++|+|+|+|++|++++|+++++|+ +|++++.+++|++.+ +++|++++++
T Consensus         1 vS~e~Aal~-epla~a~~a~~~~~-~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a-~~~Ga~~~~~   77 (171)
T d1pl8a2           1 VTFEEGALI-EPLSVGIHACRRGG-VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEIGADLVLQ   77 (171)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCSEEEE
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHhC-CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHH-HHhCCccccc
Confidence            578898844 56778999998876 7999999999999999999999999999 899999998877655 7899999988


Q ss_pred             CCCHH---HHHHh---c-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHH
Q 027664           94 SRDQD---EMQAA---M-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLK  166 (220)
Q Consensus        94 ~~~~~---~~~~~---~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (220)
                      +.+.+   ..+.+   . .++|++|||+|.+..++.++++++++|+++.+|....+.++++..++.|++++.|++.+. +
T Consensus        78 ~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~~~~-~  156 (171)
T d1pl8a2          78 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYC-N  156 (171)
T ss_dssp             CSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSCS-S
T ss_pred             ccccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEeCCH-h
Confidence            76542   22222   2 389999999999888999999999999999999988778899999999999999998653 5


Q ss_pred             HHHHHHHHHHcCCCc
Q 027664          167 ETQEMIDFAAKHNIR  181 (220)
Q Consensus       167 ~~~~~~~~i~~g~i~  181 (220)
                      +++++++++++|+++
T Consensus       157 ~~~~al~li~~gkid  171 (171)
T d1pl8a2         157 TWPVAISMLASKSVN  171 (171)
T ss_dssp             CHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHcCCCC
Confidence            789999999999874

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.96  E-value=8.1e-29  Score=176.25  Aligned_cols=161  Identities=23%  Similarity=0.237  Sum_probs=136.0

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcC
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~   94 (220)
                      +|+++||.+ .+..+||+++++.. +++|++|+|+|+|++|++++|+++++|++|++++.+++|++.+ +++|++..++.
T Consensus         1 VS~e~Aal~-ePla~a~~a~~~~~-~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a-~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALL-EPLSVGVHACRRAG-VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA-KNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTH-HHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEEC
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHhC-CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHH-HHcCCcEEEec
Confidence            578998855 46678999998876 7999999999999999999999999999999999999887655 78999877654


Q ss_pred             CC----H-HH---HHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCH
Q 027664           95 RD----Q-DE---MQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGL  165 (220)
Q Consensus        95 ~~----~-~~---~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (220)
                      ..    . +.   +.+..+ ++|++|||+|++..++.++++++++|+++.+|...++.++++..++.|++++.|++.+. 
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~gs~~~~-  156 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYC-  156 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSCS-
T ss_pred             cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCHHHHHHCCCEEEEEECCH-
Confidence            33    1 12   222223 79999999999878999999999999999999888778899999999999999997654 


Q ss_pred             HHHHHHHHHHHcCC
Q 027664          166 KETQEMIDFAAKHN  179 (220)
Q Consensus       166 ~~~~~~~~~i~~g~  179 (220)
                      .+++++++++++|+
T Consensus       157 ~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         157 NDYPIALEMVASGR  170 (170)
T ss_dssp             SCHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCC
Confidence            47889999999885

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.96  E-value=9.5e-29  Score=175.81  Aligned_cols=162  Identities=19%  Similarity=0.319  Sum_probs=133.8

Q ss_pred             CccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcC
Q 027664           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        16 s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~   94 (220)
                      ++++||.++|++.|+|+++.+...+++|++|+|+|+|++|++++|+++.+|+ +|++++.+++|+ ++.+++|+++++++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~~Ga~~~i~~   80 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKALGATDCLNP   80 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCSEEECG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHHhCCCcccCC
Confidence            4678999999999999998777779999999999999999999999999999 677777777665 55589999999986


Q ss_pred             CCH----HHHHHh-c-CCccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCC---
Q 027664           95 RDQ----DEMQAA-M-GTMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGG---  164 (220)
Q Consensus        95 ~~~----~~~~~~-~-~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---  164 (220)
                      ...    ..+.+. . +++|++|||+|.+..++.++++++++ |+++.+|...+..++++..++. +.++.|++.++   
T Consensus        81 ~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~~~i~~~~~~~-~k~i~Gs~~Gs~~~  159 (174)
T d1e3ia2          81 RELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVIL-GRSINGTFFGGWKS  159 (174)
T ss_dssp             GGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHT-TCEEEECSGGGCCH
T ss_pred             ccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCccccchHHHhc-cCEEEEEEeeCCCh
Confidence            542    222222 2 38999999999988899999999996 9999999877777887777654 56888887643   


Q ss_pred             HHHHHHHHHHHHcCC
Q 027664          165 LKETQEMIDFAAKHN  179 (220)
Q Consensus       165 ~~~~~~~~~~i~~g~  179 (220)
                      .++++++++++++|+
T Consensus       160 ~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         160 VDSVPNLVSDYKNKK  174 (174)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHCcC
Confidence            577888999998875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.96  E-value=7e-29  Score=176.68  Aligned_cols=163  Identities=18%  Similarity=0.230  Sum_probs=133.8

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEc
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~   93 (220)
                      +|+|+|+.+++.+.|+|++++... +++|++|+|+|+|++|++++|+|+.+|+ +|++++.+++|++.+ +++|+++++|
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~a~-~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a-~~lGa~~~i~   78 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAELAD-IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA-KFYGATDILN   78 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHHTT-CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH-HHHTCSEEEC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhC-CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHH-HhhCcccccc
Confidence            578999999999999999998764 8999999999999999999999999999 788888888766555 7899999999


Q ss_pred             CCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCc----hhhhcCCeEEEEEecCC
Q 027664           94 SRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA----FPLLTGRKIVGGSLIGG  164 (220)
Q Consensus        94 ~~~~---~~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~  164 (220)
                      +.++   +.+.+.++  ++|++|||+|.+..++.++++++++|+++.+|.......++.    +....+++++.++....
T Consensus        79 ~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  158 (174)
T d1jqba2          79 YKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPG  158 (174)
T ss_dssp             GGGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCCCC
T ss_pred             ccchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecCCC
Confidence            8764   34556664  799999999998789999999999999999998665433222    23355788999887765


Q ss_pred             HH-HHHHHHHHHHcCC
Q 027664          165 LK-ETQEMIDFAAKHN  179 (220)
Q Consensus       165 ~~-~~~~~~~~i~~g~  179 (220)
                      .+ ..+.+.++++.|+
T Consensus       159 ~r~~~e~l~~li~~gk  174 (174)
T d1jqba2         159 GRLRAERLRDMVVYNR  174 (174)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             CcccHHHHHHHHHcCC
Confidence            54 4567778888775

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=3.5e-29  Score=177.97  Aligned_cols=146  Identities=27%  Similarity=0.381  Sum_probs=121.6

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEc
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~   93 (220)
                      +|+++||++++++.|||+++++. ++++|++|||+|+ |++|++++|+|+++|++|+++++++++++.+ +++|+++++|
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~~-~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~-~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKRA-QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP-LALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHHT-TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH-HHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHh-CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccc-cccccceeee
Confidence            58899999999999999999875 5899999999996 9999999999999999999999998777665 7899999999


Q ss_pred             CCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCCeEEEEEecCC
Q 027664           94 SRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGRKIVGGSLIGG  164 (220)
Q Consensus        94 ~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~  164 (220)
                      +.+........+++|+||||+|.  .+..++++++++|+++.+|...+ ..++++..++.|++++.|++..+
T Consensus        79 ~~~~~~~~~~~~g~D~v~d~~G~--~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~~  148 (171)
T d1iz0a2          79 YAEVPERAKAWGGLDLVLEVRGK--EVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTP  148 (171)
T ss_dssp             GGGHHHHHHHTTSEEEEEECSCT--THHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHH
T ss_pred             hhhhhhhhhccccccccccccch--hHHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCcC
Confidence            87643222223489999999983  58999999999999999998764 46788889999999999997654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.96  E-value=4.3e-28  Score=172.64  Aligned_cols=162  Identities=25%  Similarity=0.308  Sum_probs=131.0

Q ss_pred             ccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCC
Q 027664           17 LDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSR   95 (220)
Q Consensus        17 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~   95 (220)
                      +.+||++.|++.|+|+++.+..++++|++|+|+|+|++|++++|+++++|+ +|++++.+++|++.+ +++|+++++|+.
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a-~~lGa~~~i~~~   80 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA-IELGATECLNPK   80 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHTTCSEEECGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHH-HHcCCcEEEcCC
Confidence            567999999999999998777779999999999999999999999999998 788888888777655 789999999876


Q ss_pred             CHH----HH-HHhcC-CccEEEEcCCCcccHHHHHhcccc-CCEEEEeCCCCCCCCCCch-hhhcCCeEEEEEecC--CH
Q 027664           96 DQD----EM-QAAMG-TMDGIIDTVSAVHPLMPLIGLLKS-QGKLVLLGAPEKPLELPAF-PLLTGRKIVGGSLIG--GL  165 (220)
Q Consensus        96 ~~~----~~-~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~-~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~  165 (220)
                      +.+    .. +..++ ++|++|||+|....+..++..+++ +|+++.+|......+++.. .++.+++++.|++.+  ..
T Consensus        81 ~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~  160 (174)
T d1p0fa2          81 DYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKG  160 (174)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTCEEEECSGGGCCG
T ss_pred             CchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHhCCCEEEEEEeCCCCH
Confidence            532    22 23333 899999999998788888888877 5999999986654444432 234567899999854  35


Q ss_pred             HHHHHHHHHHHcCC
Q 027664          166 KETQEMIDFAAKHN  179 (220)
Q Consensus       166 ~~~~~~~~~i~~g~  179 (220)
                      ++++++++++.+|+
T Consensus       161 ~d~~~lidl~~~gK  174 (174)
T d1p0fa2         161 EEVSRLVDDYMKKK  174 (174)
T ss_dssp             GGHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCC
Confidence            68999999999885

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=5.5e-29  Score=179.21  Aligned_cols=164  Identities=20%  Similarity=0.260  Sum_probs=135.8

Q ss_pred             cccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCC
Q 027664           18 DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD   96 (220)
Q Consensus        18 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~   96 (220)
                      +|||+++++++|||+++.+..++++|++|||+|+ |++|++++|+|+..|++++++++++++.+. ++++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~-l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM-LSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH-HHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccc-cccccccccccCCc
Confidence            5899999999999999988888999999999986 999999999999999999999998877654 57899999999887


Q ss_pred             HH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCC-CCCchhhhcCCeEEEEEecCC------
Q 027664           97 QD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTGRKIVGGSLIGG------  164 (220)
Q Consensus        97 ~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~------  164 (220)
                      ++   .+++.++  ++|++|||+|++ .++.++++++++|+++.+|...... .......+.++.++.++....      
T Consensus        80 ~~~~~~v~~~t~~~g~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (183)
T d1pqwa_          80 VDFADEILELTDGYGVDVVLNSLAGE-AIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQP  158 (183)
T ss_dssp             STHHHHHHHHTTTCCEEEEEECCCTH-HHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHHHCH
T ss_pred             cCHHHHHHHHhCCCCEEEEEecccch-HHHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceeccCH
Confidence            54   4555554  799999999986 7999999999999999998765432 223334467888888875432      


Q ss_pred             ---HHHHHHHHHHHHcCCCccc
Q 027664          165 ---LKETQEMIDFAAKHNIRAD  183 (220)
Q Consensus       165 ---~~~~~~~~~~i~~g~i~~~  183 (220)
                         ++.++++.+++++|+++|.
T Consensus       159 ~~~~~~~~~v~~~i~~G~i~p~  180 (183)
T d1pqwa_         159 ARYRQLLQHILQHVADGKLEVL  180 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHHHHCCCCcee
Confidence               2557888899999999874

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.95  E-value=1.6e-28  Score=177.35  Aligned_cols=164  Identities=14%  Similarity=0.225  Sum_probs=135.5

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCCCEEEEE-cc-chhHHHHHHHHHHCCCeEEEEeCCccchH---HHHHHcCCC
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV-GL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS---EAVERLGAD   89 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~-G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~---~~~~~~g~~   89 (220)
                      +|+++||+++++++|||+++.+..++++|++++|+ |+ |++|++++|+||++|++||+++++.++.+   +.++++|++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad   80 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT   80 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc
Confidence            58999999999999999999988889999988887 55 89999999999999999999987765543   345789999


Q ss_pred             EEEcCCCHH------HHHHhc----CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCCeEEE
Q 027664           90 SFLVSRDQD------EMQAAM----GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGRKIVG  158 (220)
Q Consensus        90 ~~~~~~~~~------~~~~~~----~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~  158 (220)
                      +++++++.+      .+++.+    +++|++|||+|++ .+...+++|+++|+++.+|...+ +.+++...++.|++++.
T Consensus        81 ~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~  159 (189)
T d1gu7a2          81 QVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGK-SSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSA  159 (189)
T ss_dssp             EEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHH-HHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEE
T ss_pred             EEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcc-hhhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEE
Confidence            999875431      233332    3799999999987 68999999999999999997654 46788889999999999


Q ss_pred             EEecCC---------HHHHHHHHHHHHcCC
Q 027664          159 GSLIGG---------LKETQEMIDFAAKHN  179 (220)
Q Consensus       159 ~~~~~~---------~~~~~~~~~~i~~g~  179 (220)
                      |++...         .+.++++++++++|+
T Consensus       160 G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         160 GFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             ECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            987643         245777888888775

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.95  E-value=1.6e-27  Score=170.47  Aligned_cols=163  Identities=17%  Similarity=0.207  Sum_probs=129.4

Q ss_pred             CccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcC
Q 027664           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        16 s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~   94 (220)
                      ++++||+++|++.|+|+++.+..++++|++|+|+|+|++|++++|+++++|+ +|++++.+++++ ++++++|+++++|+
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~-~~ak~lGa~~~i~~   80 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEFGATECINP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHHTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHH-HHHHHhCCcEEEeC
Confidence            5789999999999999999877779999999999999999999999999998 666666666555 55589999999988


Q ss_pred             CCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC--CCCCchhhhcCCeEEEEEecCC--
Q 027664           95 RDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--LELPAFPLLTGRKIVGGSLIGG--  164 (220)
Q Consensus        95 ~~~-----~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~--  164 (220)
                      .+.     +.++..++ ++|++||++|.+..+..+..+++++|.++.++.....  ...+....+.+++++.|++.++  
T Consensus        81 ~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~  160 (176)
T d2fzwa2          81 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWK  160 (176)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred             CchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCc
Confidence            542     22334443 8999999999987788899999999888877654432  2333334456788999998654  


Q ss_pred             -HHHHHHHHHHHHcCC
Q 027664          165 -LKETQEMIDFAAKHN  179 (220)
Q Consensus       165 -~~~~~~~~~~i~~g~  179 (220)
                       .+++.++++++++|+
T Consensus       161 ~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         161 SVESVPKLVSEYMSKK  176 (176)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCC
Confidence             467888999998885

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.95  E-value=2e-27  Score=170.65  Aligned_cols=156  Identities=21%  Similarity=0.228  Sum_probs=129.1

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHH-
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD-   98 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-   98 (220)
                      ++++++++|||+++.+..++++|++|||+|+ |++|++++|+++..|++||++++++++.+.+ +++|+++++++.+++ 
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~-~~~Ga~~vi~~~~~~~   86 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFDAAFNYKTVNS   86 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTSCSC
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHH-HhhhhhhhcccccccH
Confidence            4688899999999999988999999999997 8999999999999999999999998776555 789999999987754 


Q ss_pred             --HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-------CCCCCchhhhcCCeEEEEEecCCH--
Q 027664           99 --EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-------PLELPAFPLLTGRKIVGGSLIGGL--  165 (220)
Q Consensus        99 --~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--  165 (220)
                        .+.+.++  ++|+||||+|.+ .++.++++++++|+++.+|....       +..+++..++.+++++.|++..+.  
T Consensus        87 ~~~~~~~~~~~Gvd~v~D~vG~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~~~  165 (182)
T d1v3va2          87 LEEALKKASPDGYDCYFDNVGGE-FLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQG  165 (182)
T ss_dssp             HHHHHHHHCTTCEEEEEESSCHH-HHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGCCH
T ss_pred             HHHHHHHhhcCCCceeEEecCch-hhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEeccCh
Confidence              3333333  899999999976 79999999999999999986432       234566778999999999876431  


Q ss_pred             ----HHHHHHHHHHHcC
Q 027664          166 ----KETQEMIDFAAKH  178 (220)
Q Consensus       166 ----~~~~~~~~~i~~g  178 (220)
                          +.++++++++++|
T Consensus       166 ~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         166 DVREKALRDLMKWVLEG  182 (182)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCc
Confidence                3467777887765

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-27  Score=171.81  Aligned_cols=162  Identities=22%  Similarity=0.257  Sum_probs=129.1

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEc
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~   93 (220)
                      +|+++||+++++++|||+++.+..++++|++|||+|+ |++|++++|+|+..|++|++++.++++++.+ +++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~-~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA-LKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH-HhcCCeEEEE
Confidence            5899999999999999999998888999999999986 8899999999999999999999999887665 7899999999


Q ss_pred             CCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcC-CeEEEEEec----
Q 027664           94 SRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTG-RKIVGGSLI----  162 (220)
Q Consensus        94 ~~~~~---~~~~~~~--~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~-~~~~~~~~~----  162 (220)
                      +++++   .+++.++  ++|+++|++|.+ .+..++.+++++|+++.++..... ..++...+..+ .+.+.+...    
T Consensus        80 ~~~~d~~~~v~~~t~g~g~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  158 (179)
T d1qora2          80 YREEDLVERLKEITGGKKVRVVYDSVGRD-TWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYI  158 (179)
T ss_dssp             TTTSCHHHHHHHHTTTCCEEEEEECSCGG-GHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHC
T ss_pred             CCCCCHHHHHHHHhCCCCeEEEEeCccHH-HHHHHHHHHhcCCeeeecccccCCccccchhhhhccceEEEEeeEEeeec
Confidence            88754   5666665  799999999976 799999999999999999877654 44555444333 343332211    


Q ss_pred             CCH----HHHHHHHHHHHcC
Q 027664          163 GGL----KETQEMIDFAAKH  178 (220)
Q Consensus       163 ~~~----~~~~~~~~~i~~g  178 (220)
                      ...    +.++++++++++|
T Consensus       159 ~~~~~~~~~~~~l~~lv~~G  178 (179)
T d1qora2         159 TTREELTEASNELFSLIASG  178 (179)
T ss_dssp             CSHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHCc
Confidence            222    2345566777766

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.94  E-value=1.8e-26  Score=164.74  Aligned_cols=163  Identities=23%  Similarity=0.290  Sum_probs=132.2

Q ss_pred             CccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcC
Q 027664           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        16 s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~   94 (220)
                      |+++||+++|++.|+|+++.+..++++|++|+|+|+|++|++++++++..|+ +|++++.+++|++.+ +++|+++++|+
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a-~~~GAd~~in~   80 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA-KVFGATDFVNP   80 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTCCEEECG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHH-HHcCCcEEEcC
Confidence            5789999999999999999877779999999999999999999999999988 788888888776555 88999999997


Q ss_pred             CCHH----HHHHhc--CCccEEEEcCCCcccHHHHHhccccCC-EEEEeCCCCCCCCCCchhhhcCCeEEEEEecCC---
Q 027664           95 RDQD----EMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQG-KLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGG---  164 (220)
Q Consensus        95 ~~~~----~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G-~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---  164 (220)
                      .+++    .....+  +++|++||++|....+..++.+++++| .++..|........+...++.+++++.|++.++   
T Consensus        81 ~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~  160 (175)
T d1cdoa2          81 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKG  160 (175)
T ss_dssp             GGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGGGCCH
T ss_pred             CCcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEeCCcH
Confidence            6532    333333  389999999999877888888887775 445555545455566667778889999997654   


Q ss_pred             HHHHHHHHHHHHcCC
Q 027664          165 LKETQEMIDFAAKHN  179 (220)
Q Consensus       165 ~~~~~~~~~~i~~g~  179 (220)
                      +++++++++++++|+
T Consensus       161 ~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         161 KDGVPKMVKAYLDKK  175 (175)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCC
Confidence            578999999999885

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.94  E-value=2.2e-26  Score=164.34  Aligned_cols=163  Identities=17%  Similarity=0.230  Sum_probs=129.2

Q ss_pred             CccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcC
Q 027664           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        16 s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~   94 (220)
                      |+++||+++|++.|+|+++.+..++++|++|+|+|+|++|++++++++..|+ +|++++.+++|++ +++++|+++++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~-~a~~~Ga~~~i~~   80 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFA-KAKEVGATECVNP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH-HHHHTTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHH-HHHHhCCeeEEec
Confidence            5789999999999999999888789999999999999999999999999997 8888888887765 4588999999987


Q ss_pred             CCH----HHHHHh-c-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC-CCCC-CCCchhhhcCCeEEEEEecCC--
Q 027664           95 RDQ----DEMQAA-M-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP-EKPL-ELPAFPLLTGRKIVGGSLIGG--  164 (220)
Q Consensus        95 ~~~----~~~~~~-~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~~~-~~~~~~~~~~~~~~~~~~~~~--  164 (220)
                      .+.    ....+. . +++|++|||+|.+..++.++..++++|..+.++.. .... .+....++.+++++.|++.++  
T Consensus        81 ~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~  160 (176)
T d2jhfa2          81 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFK  160 (176)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred             CCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCC
Confidence            542    222233 3 38999999999987788899999887555544443 3332 233345677899999998654  


Q ss_pred             -HHHHHHHHHHHHcCC
Q 027664          165 -LKETQEMIDFAAKHN  179 (220)
Q Consensus       165 -~~~~~~~~~~i~~g~  179 (220)
                       .++++++++++.+|+
T Consensus       161 ~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         161 SKDSVPKLVADFMAKK  176 (176)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHCcC
Confidence             678889999998875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.94  E-value=2e-26  Score=164.13  Aligned_cols=159  Identities=20%  Similarity=0.317  Sum_probs=128.8

Q ss_pred             CccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcC
Q 027664           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        16 s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~   94 (220)
                      ++++||.++|++.|+|+++.+..++++|++|+|+|+|++|++++|+++++|+ +|++++.+++|++.+ +++|+++++|+
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A-k~~GA~~~in~   81 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA-MAVGATECISP   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHHTCSEEECG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHH-HhcCCcEEECc
Confidence            5789999999999999999777779999999999999999999999999997 899999999887655 89999999987


Q ss_pred             CCHH----HHHHhc--CCccEEEEcCCCcccHHHHHhccccC-CEEEEeCCCCCCCC--CCchhhhcCCeEEEEEecCC-
Q 027664           95 RDQD----EMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKPLE--LPAFPLLTGRKIVGGSLIGG-  164 (220)
Q Consensus        95 ~~~~----~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~-  164 (220)
                      .+.+    .+.+.+  +|+|++||++|....+..++..+.++ |+++.+|.......  +++.. +.++.++.|++.++ 
T Consensus        82 ~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~-~~~~~~i~Gs~~G~~  160 (176)
T d1d1ta2          82 KDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPML-LFTGRTWKGCVFGGL  160 (176)
T ss_dssp             GGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHH-HHTTCEEEECSGGGC
T ss_pred             cccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHH-HhCCCEEEEEEEeCC
Confidence            6532    233333  38999999999987788888777665 99999998765543  34444 44678999988653 


Q ss_pred             --HHHHHHHHHHHH
Q 027664          165 --LKETQEMIDFAA  176 (220)
Q Consensus       165 --~~~~~~~~~~i~  176 (220)
                        ++++..+++++.
T Consensus       161 ~~~~dip~li~~~~  174 (176)
T d1d1ta2         161 KSRDDVPKLVTEFL  174 (176)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHh
Confidence              577777777654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.7e-26  Score=165.24  Aligned_cols=163  Identities=16%  Similarity=0.142  Sum_probs=126.1

Q ss_pred             CCccccccccchhhhhhhHHHhhcCCCCC--CEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCE
Q 027664           15 APLDATAPLLCAGITVYSPLRFYGLDKPG--MHVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADS   90 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~G~-g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~   90 (220)
                      +|+.+.| ++++++|||+++.....+++|  ++|||+|+ |++|++++|+||.+|+ .|++++.++++...+++.+|+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            5667764 788899999999998888887  88999996 9999999999999999 56667888888888888999999


Q ss_pred             EEcCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC---C----CCC---chhhhcCCeE
Q 027664           91 FLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP---L----ELP---AFPLLTGRKI  156 (220)
Q Consensus        91 ~~~~~~~~---~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~---~----~~~---~~~~~~~~~~  156 (220)
                      ++|+.+++   .+++.++ |+|+|||++|++ .++..+++++++|+++.+|...+.   .    ...   ...+..++++
T Consensus        81 vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg~-~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~  159 (187)
T d1vj1a2          81 AVNYKTGNVAEQLREACPGGVDVYFDNVGGD-ISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNIT  159 (187)
T ss_dssp             EEETTSSCHHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCE
T ss_pred             EeeccchhHHHHHHHHhccCceEEEecCCch-hHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceE
Confidence            99998754   4555554 899999999987 699999999999999999975431   1    111   1124568889


Q ss_pred             EEEEecCC-----HHHHHHHHHHHHcCC
Q 027664          157 VGGSLIGG-----LKETQEMIDFAAKHN  179 (220)
Q Consensus       157 ~~~~~~~~-----~~~~~~~~~~i~~g~  179 (220)
                      +.|+...+     .+.++++.+++.+|+
T Consensus       160 ~~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         160 RERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             EEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             EEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            88876532     245677888888875

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.4e-26  Score=164.52  Aligned_cols=155  Identities=20%  Similarity=0.221  Sum_probs=127.3

Q ss_pred             CCccccccccchhhhhhhHHH---hhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE
Q 027664           15 APLDATAPLLCAGITVYSPLR---FYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS   90 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~   90 (220)
                      +|+.+||+++++++|||++++   +.+..+++++|||+|+ |++|.+++|+||.+|++||++++++++.+.+ +.+|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~-~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL-KSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH-Hhhcccc
Confidence            478899999999999997764   4454455679999987 9999999999999999999999999887655 7899999


Q ss_pred             EEcCCCHHHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC-CCCCCchhhhcCCeEEEEEec--CCHH
Q 027664           91 FLVSRDQDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGRKIVGGSLI--GGLK  166 (220)
Q Consensus        91 ~~~~~~~~~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~  166 (220)
                      ++|+++.+..+.+.+ .+|.++|++|++ .+...+++++++|+++.+|...+ ..+++..+++.|++++.|+..  .+.+
T Consensus        80 vi~~~~~~~~~~l~~~~~~~vvD~Vgg~-~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~  158 (177)
T d1o89a2          80 VLPRDEFAESRPLEKQVWAGAIDTVGDK-VLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPE  158 (177)
T ss_dssp             EEEGGGSSSCCSSCCCCEEEEEESSCHH-HHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECCSSSCCHH
T ss_pred             ccccccHHHHHHHHhhcCCeeEEEcchH-HHHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEecccCCHH
Confidence            999876554444443 689999999987 69999999999999999998765 477888899999999999754  3444


Q ss_pred             HHHHH
Q 027664          167 ETQEM  171 (220)
Q Consensus       167 ~~~~~  171 (220)
                      +..++
T Consensus       159 ~~~~~  163 (177)
T d1o89a2         159 RRAQA  163 (177)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            43333

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=2.1e-24  Score=155.91  Aligned_cols=160  Identities=20%  Similarity=0.140  Sum_probs=128.7

Q ss_pred             cccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCC
Q 027664           18 DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRD   96 (220)
Q Consensus        18 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~   96 (220)
                      ++.++++..+.|||+++... .+++|++|+|+|+|++|++++++++..|+ +|++++.+++|++.+ +++|+++++++.+
T Consensus         2 ~d~~~l~d~~~ta~~a~~~a-~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a-~~~Ga~~~~~~~~   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGAVTA-GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQGFEIADLSLD   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCEEEETTSS
T ss_pred             chHHhcccHHHHHHHHHHHh-CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhh-hhccccEEEeCCC
Confidence            45678899999999999875 48999999999999999999999999999 888888888776555 8899999998876


Q ss_pred             HH---HHHHhcC--CccEEEEcCCCc---------------ccHHHHHhccccCCEEEEeCCCCCC-------------C
Q 027664           97 QD---EMQAAMG--TMDGIIDTVSAV---------------HPLMPLIGLLKSQGKLVLLGAPEKP-------------L  143 (220)
Q Consensus        97 ~~---~~~~~~~--~~d~v~d~~g~~---------------~~~~~~~~~l~~~G~~v~~g~~~~~-------------~  143 (220)
                      .+   .+.++++  ++|++|||+|.+               +.++.++++++++|+++.+|.....             .
T Consensus        80 ~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~  159 (195)
T d1kola2          80 TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSL  159 (195)
T ss_dssp             SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCC
T ss_pred             cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCce
Confidence            53   4556654  799999999943               4689999999999999999975432             2


Q ss_pred             CCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCC
Q 027664          144 ELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHN  179 (220)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~  179 (220)
                      +++...++.|++++.+....-.+.+++++++|.+++
T Consensus       160 ~~~~~~~~~k~~~i~~g~~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         160 SIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             CCCHHHHHHTTCEEEESSCCHHHHHHHHHHHHHTTS
T ss_pred             eeeHHHHHhhcceeccCCCchHHHHHHHHHHHHcCC
Confidence            344555677888887654444455788899888764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=6.4e-25  Score=154.49  Aligned_cols=155  Identities=19%  Similarity=0.267  Sum_probs=120.1

Q ss_pred             chhhhhhhH---HHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHH--
Q 027664           25 CAGITVYSP---LRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD--   98 (220)
Q Consensus        25 ~~~~ta~~~---l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~--   98 (220)
                      +++.|||.+   |.+.+..+++++|||+|+ |++|.+++|+||++|++|+.+++++++.+.+ +++|+++++++++..  
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~-~~lGad~vi~~~~~~~~   81 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL-KQLGASEVISREDVYDG   81 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH-HHHTCSEEEEHHHHCSS
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH-HhhcccceEeccchhch
Confidence            456777755   555565667889999997 9999999999999999999999998877666 789999999865321  


Q ss_pred             HHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCC-CCCCchhhhcCCeEEEEEecC--CHHHHHHHHHH
Q 027664           99 EMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGRKIVGGSLIG--GLKETQEMIDF  174 (220)
Q Consensus        99 ~~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  174 (220)
                      .+.... +++|+|||++|++ .+..++++++++|+++.+|...+. .+++..+++.|++++.|....  +.+..+.+.+.
T Consensus        82 ~~~~~~~~gvd~vid~vgg~-~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~~~~~~~~~~~~~~  160 (167)
T d1tt7a2          82 TLKALSKQQWQGAVDPVGGK-QLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWER  160 (167)
T ss_dssp             CCCSSCCCCEEEEEESCCTH-HHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHH
T ss_pred             hhhcccCCCceEEEecCcHH-HHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEecCCCCHHHHHHHHHH
Confidence            111122 3899999999988 699999999999999999988764 688899999999999996543  34555555554


Q ss_pred             HHcCCCcc
Q 027664          175 AAKHNIRA  182 (220)
Q Consensus       175 i~~g~i~~  182 (220)
                      +. +.++|
T Consensus       161 l~-~~L~P  167 (167)
T d1tt7a2         161 MS-SDLKP  167 (167)
T ss_dssp             TT-TTSCC
T ss_pred             HH-hcCCC
Confidence            43 34443

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.8e-16  Score=95.30  Aligned_cols=73  Identities=25%  Similarity=0.288  Sum_probs=63.3

Q ss_pred             CCccccccccchhhhhhhHHH---hhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC
Q 027664           15 APLDATAPLLCAGITVYSPLR---FYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA   88 (220)
Q Consensus        15 ~s~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~   88 (220)
                      +|++||+++++++.|||+++.   +....+++++|||+|+ |++|.+++|+++..|++|++++.++++.+.+ +++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~-~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL-KSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH-HHCCC
Confidence            578999999999999998875   3445689999999987 9999999999999999999999998877655 77774

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.87  E-value=1.3e-08  Score=69.34  Aligned_cols=100  Identities=19%  Similarity=0.236  Sum_probs=80.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      +..+|+|+|+|..|+.+++.|+.+|++|.+.+.+.++++++...++........+++.+.+....+|+||.|+--+.   
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a  110 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA  110 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence            45789999999999999999999999999999999998888666654333334556666666678999999874321   


Q ss_pred             ---cHHHHHhccccCCEEEEeCCCCC
Q 027664          119 ---PLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       119 ---~~~~~~~~l~~~G~~v~~g~~~~  141 (220)
                         .-...++.|++|..+|.+....+
T Consensus       111 P~lIt~~mv~~Mk~GSVIVDvaidqG  136 (168)
T d1pjca1         111 PILVPASLVEQMRTGSVIVDVAVDQG  136 (168)
T ss_dssp             CCCBCHHHHTTSCTTCEEEETTCTTC
T ss_pred             CeeecHHHHhhcCCCcEEEEeecCCC
Confidence               24789999999999999987654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.66  E-value=1.5e-07  Score=64.92  Aligned_cols=99  Identities=21%  Similarity=0.241  Sum_probs=73.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEc-CC----------------------CHH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV-SR----------------------DQD   98 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~-~~----------------------~~~   98 (220)
                      +..+|+|+|+|..|+.+++.|+.+|++|.+.+.+.++++++ ++++...+.- ..                      +.+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l-~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV-ESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH-HHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHH-HHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            44689999999999999999999999999999999988888 5666533310 00                      011


Q ss_pred             HHHHhcCCccEEEEcCCCc---c---cHHHHHhccccCCEEEEeCCCCC
Q 027664           99 EMQAAMGTMDGIIDTVSAV---H---PLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus        99 ~~~~~~~~~d~v~d~~g~~---~---~~~~~~~~l~~~G~~v~~g~~~~  141 (220)
                      .+.+.....|+||-++--+   .   .-+.+++.|++|..+|.+....+
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqG  155 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAG  155 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGT
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCC
Confidence            2333345899999887322   1   24789999999999999987654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.61  E-value=2.4e-07  Score=65.30  Aligned_cols=82  Identities=13%  Similarity=0.118  Sum_probs=65.8

Q ss_pred             HhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-----CCEEEcCCCHHHHHHhcCCcc
Q 027664           35 RFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-----ADSFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        35 ~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~d  108 (220)
                      ...+.--.|+++||.|+ |++|..+++.+...|++|++++++.++.+++.+.+.     .....|..+.+.+++..+++|
T Consensus        15 ~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iD   94 (191)
T d1luaa1          15 KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAH   94 (191)
T ss_dssp             HHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCS
T ss_pred             HHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcC
Confidence            44444458999999997 999999999999999999999999988766655442     234467777788888888999


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++|+++|.
T Consensus        95 ilin~Ag~  102 (191)
T d1luaa1          95 FVFTAGAI  102 (191)
T ss_dssp             EEEECCCT
T ss_pred             eeeecCcc
Confidence            99999874

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.52  E-value=2.7e-07  Score=62.93  Aligned_cols=79  Identities=25%  Similarity=0.300  Sum_probs=61.6

Q ss_pred             HhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEc
Q 027664           35 RFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        35 ~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      +..+. -.+.++||+|+|.+|..+++.+...|+ +++++.++.++.+.+++.+|.. +.++.   .+.+....+|+||.|
T Consensus        17 ~~~~~-l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~~---~~~~~l~~~Divi~a   91 (159)
T d1gpja2          17 RELGS-LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRFD---ELVDHLARSDVVVSA   91 (159)
T ss_dssp             HHHSC-CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCGG---GHHHHHHTCSEEEEC
T ss_pred             HHhCC-cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccch---hHHHHhccCCEEEEe
Confidence            44443 578899999999999999999888999 7989999988888888888854 33332   344444589999999


Q ss_pred             CCCcc
Q 027664          114 VSAVH  118 (220)
Q Consensus       114 ~g~~~  118 (220)
                      ++.+.
T Consensus        92 tss~~   96 (159)
T d1gpja2          92 TAAPH   96 (159)
T ss_dssp             CSSSS
T ss_pred             cCCCC
Confidence            98764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=8e-07  Score=64.92  Aligned_cols=99  Identities=21%  Similarity=0.342  Sum_probs=72.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +|+++||.|+ +++|.++++.+...|++|+.+++++++.+++.++++..   ...|..+++.++++       .+++|++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL   82 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence            5789999997 89999999998889999999999998888887777642   33456665544332       2479999


Q ss_pred             EEcCCCcc-------------------------cHHHHHhcc--ccCCEEEEeCCCC
Q 027664          111 IDTVSAVH-------------------------PLMPLIGLL--KSQGKLVLLGAPE  140 (220)
Q Consensus       111 ~d~~g~~~-------------------------~~~~~~~~l--~~~G~~v~~g~~~  140 (220)
                      ++++|...                         ..+.++..|  +++|+++.++...
T Consensus        83 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~  139 (243)
T d1q7ba_          83 VNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVV  139 (243)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHH
T ss_pred             hhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchh
Confidence            99987631                         113345555  3469999987643

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.5e-06  Score=63.54  Aligned_cols=77  Identities=21%  Similarity=0.306  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--CEEEcCCCHHHHHHhcC---CccEEEEcC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSFLVSRDQDEMQAAMG---TMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~---~~d~v~d~~  114 (220)
                      -.|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++++.  ....|..+++.++++.+   ++|++++++
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnA   84 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEecc
Confidence            36899999997 8999999999999999999999999888888777764  23456777777766543   799999998


Q ss_pred             CCc
Q 027664          115 SAV  117 (220)
Q Consensus       115 g~~  117 (220)
                      |..
T Consensus        85 g~~   87 (244)
T d1pr9a_          85 AVA   87 (244)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            763

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.31  E-value=1.7e-06  Score=59.36  Aligned_cols=76  Identities=18%  Similarity=0.174  Sum_probs=59.3

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccE
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~  109 (220)
                      ..++.... +.++++|+|+|+|+.+.+++..++..|+ ++.++.++.++.+.+.+.++...+ +...       ...+|+
T Consensus         6 ~~~l~~~~-~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~-~~~~-------~~~~Dl   76 (167)
T d1npya1           6 VKLIEKYH-LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYI-NSLE-------NQQADI   76 (167)
T ss_dssp             HHHHHHTT-CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEE-SCCT-------TCCCSE
T ss_pred             HHHHHHcC-CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhh-hccc-------ccchhh
Confidence            34566665 5678999999999999999999999998 899999999888888777776543 2111       126899


Q ss_pred             EEEcCC
Q 027664          110 IIDTVS  115 (220)
Q Consensus       110 v~d~~g  115 (220)
                      +++|++
T Consensus        77 iINaTp   82 (167)
T d1npya1          77 LVNVTS   82 (167)
T ss_dssp             EEECSS
T ss_pred             heeccc
Confidence            999986

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.30  E-value=1.6e-06  Score=63.17  Aligned_cols=75  Identities=19%  Similarity=0.367  Sum_probs=60.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHh-------cCCccEEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~-------~~~~d~v~d  112 (220)
                      +|+++||.|+ +++|.++++.+...|++|+.+++++++.++..+.+++..+ .|..+++.++++       .+++|++++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn   83 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEE
Confidence            5799999997 8999999999999999999999999888888888876443 466666544433       247999999


Q ss_pred             cCCC
Q 027664          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        84 nAG~   87 (242)
T d1ulsa_          84 YAGI   87 (242)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9886

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=2.4e-06  Score=62.26  Aligned_cols=75  Identities=23%  Similarity=0.322  Sum_probs=61.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--CEEEcCCCHHHHHHhcC---CccEEEEcCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSFLVSRDQDEMQAAMG---TMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~---~~d~v~d~~g  115 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++++.  ....|..+++.+++..+   ++|++++++|
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnAg   83 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAA   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECCc
Confidence            5899999997 8999999999999999999999999888888777753  23346667776766543   7999999988


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        84 ~   84 (242)
T d1cyda_          84 L   84 (242)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.27  E-value=5e-06  Score=60.94  Aligned_cols=100  Identities=18%  Similarity=0.278  Sum_probs=73.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE---cCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL---VSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +|+++||.|+ +++|.++++.+...|++|+.+++++++.+++.++++....+   |..+++.++++       .+++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            6799999997 89999999999899999999999998888888888764443   44444433322       2479999


Q ss_pred             EEcCCCcc-------------------------cHHHHHhccc-cCCEEEEeCCCCC
Q 027664          111 IDTVSAVH-------------------------PLMPLIGLLK-SQGKLVLLGAPEK  141 (220)
Q Consensus       111 ~d~~g~~~-------------------------~~~~~~~~l~-~~G~~v~~g~~~~  141 (220)
                      ++++|...                         ..+.++..|+ .+|+++.++...+
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~  141 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSS  141 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhh
Confidence            99998631                         1133445554 5799999876543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=1.6e-06  Score=62.02  Aligned_cols=102  Identities=21%  Similarity=0.185  Sum_probs=69.3

Q ss_pred             HHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHc---CCCE-EEcCCCHHHHHHhcCC
Q 027664           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL---GADS-FLVSRDQDEMQAAMGT  106 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~---g~~~-~~~~~~~~~~~~~~~~  106 (220)
                      .+..+ .+++|++||-+|+|. |..++.+++..|.  +|+.++.+++..+.+.+.+   +.+. .+...+........+.
T Consensus        67 ~l~~l-~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          67 FMEWV-GLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHT-TCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHhh-hccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            34444 489999999999975 8888889988764  8999998887665554432   3322 2212221111111236


Q ss_pred             ccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664          107 MDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       107 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      ||.|+.+.+-....+.+++.|++||+++..
T Consensus       145 fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         145 YDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             EEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            999998776655567889999999999874

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=1e-05  Score=59.19  Aligned_cols=98  Identities=20%  Similarity=0.290  Sum_probs=69.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHH----HcCCCE---EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE----RLGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~----~~g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|++++++.++.++..+    .+|.+.   ..|-.+++.++++       .++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   83 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 899999999999999999999999877655443    345432   2355665544433       247


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEeCCC
Q 027664          107 MDGIIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~G~~v~~g~~  139 (220)
                      +|++++++|...                         ..+.++..|+  ++|+++.++..
T Consensus        84 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~  143 (251)
T d1vl8a_          84 LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL  143 (251)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence            999999998631                         1134456664  35899988764

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=98.22  E-value=7.6e-06  Score=59.75  Aligned_cols=100  Identities=19%  Similarity=0.248  Sum_probs=71.0

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHh-------cCCccEEE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~-------~~~~d~v~  111 (220)
                      =.|+++||.|+ +++|.++++.+...|++|++++++++..+ ..+..+...+ .|..+++.++++       .+++|+++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            46899999997 89999999999999999999999876544 4466665433 455665544433       24799999


Q ss_pred             EcCCCcc-------------------------cHHHHHhcccc--CCEEEEeCCCCC
Q 027664          112 DTVSAVH-------------------------PLMPLIGLLKS--QGKLVLLGAPEK  141 (220)
Q Consensus       112 d~~g~~~-------------------------~~~~~~~~l~~--~G~~v~~g~~~~  141 (220)
                      +++|...                         ..+.++..|++  +|+++.++....
T Consensus        82 nnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~  138 (248)
T d2d1ya1          82 NNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQG  138 (248)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             EeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccc
Confidence            9987521                         11334556644  689998876543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=2.3e-06  Score=58.93  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=65.7

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEE
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~  111 (220)
                      .+|...+...+|++|||+|+|+.+.+++..+...|++++++.++.++.+.+.+.+.....+.....+.  .....+|+++
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~--~~~~~~dliI   84 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDE--LEGHEFDLII   84 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGG--GTTCCCSEEE
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccccccc--ccccccceee
Confidence            45666654468899999999999999998888899999999999988877766654211111111111  0123789999


Q ss_pred             EcCCCccc---HHHHHhccccCCEEEEe
Q 027664          112 DTVSAVHP---LMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       112 d~~g~~~~---~~~~~~~l~~~G~~v~~  136 (220)
                      +|++-...   ...-...+.++..++.+
T Consensus        85 N~Tp~G~~~~~~~~~~~~~~~~~~v~D~  112 (170)
T d1nyta1          85 NATSSGISGDIPAIPSSLIHPGIYCYDM  112 (170)
T ss_dssp             ECCSCGGGTCCCCCCGGGCCTTCEEEES
T ss_pred             cccccCcccCCCCCcHHHhccCcEEEEe
Confidence            99865311   11112345555555544

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.17  E-value=4.1e-06  Score=61.05  Aligned_cols=76  Identities=20%  Similarity=0.205  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHh-------cCCccE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~-------~~~~d~  109 (220)
                      -.|+++||.|+ +++|.++++.+...|++|+++++++++.+.+.++++....   .|..+++.++++       .+++|+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idi   83 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV   83 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeE
Confidence            36899999997 8999999999999999999999999888888887764222   455565544332       247999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus        84 linnAG~   90 (244)
T d1nffa_          84 LVNNAGI   90 (244)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999986

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=8.8e-06  Score=59.72  Aligned_cols=76  Identities=16%  Similarity=0.186  Sum_probs=56.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC-CE----EEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA-DS----FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~-~~----~~~~~~~~~~~~~-------~~  105 (220)
                      +|+++||.|+ +++|.++++.+...|++|+.++++.++.+++++++   +. ..    ..|-.+++.++++       .+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4789999997 89999999988889999999999988877765543   21 12    2355665544432       24


Q ss_pred             CccEEEEcCCCc
Q 027664          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~v~d~~g~~  117 (220)
                      ++|++++++|..
T Consensus        89 ~iD~lVnnAg~~  100 (257)
T d1xg5a_          89 GVDICINNAGLA  100 (257)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEeccccc
Confidence            799999999863

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=98.16  E-value=3.9e-06  Score=61.53  Aligned_cols=75  Identities=24%  Similarity=0.392  Sum_probs=59.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +|+++||.|+ +++|.++++.+...|++|+.+++++++.++..++++..   ...|..+++.++++       .+++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   83 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence            5899999997 89999999988888999999999998888888888743   22455555544433       2479999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        84 VnnAg~   89 (254)
T d1hdca_          84 VNNAGI   89 (254)
T ss_dssp             EECCCC
T ss_pred             EecCcc
Confidence            999876

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.16  E-value=3.3e-06  Score=62.03  Aligned_cols=75  Identities=16%  Similarity=0.297  Sum_probs=60.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +|+++||.|+ +++|.++++.+...|++|++++++.++.+++.+++|.+..   .|..+++.++++       .+++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDil   83 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDIL   83 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            5789999997 8999999999999999999999999888888888885433   355666544433       2489999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        84 VnnAg~   89 (256)
T d1k2wa_          84 VNNAAL   89 (256)
T ss_dssp             EECCCC
T ss_pred             Eeeccc
Confidence            999885

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.14  E-value=3.2e-07  Score=60.49  Aligned_cols=45  Identities=18%  Similarity=0.232  Sum_probs=40.8

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEE
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV   48 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI   48 (220)
                      +++++.++++|+++|+++||++++.+.|||+++.+.+  +.|++||+
T Consensus        86 ~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~  130 (131)
T d1iz0a1          86 AVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVR  130 (131)
T ss_dssp             EEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEE
T ss_pred             eeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEE
Confidence            5789999999999999999999999999999998766  56898886

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=6.4e-06  Score=60.22  Aligned_cols=75  Identities=19%  Similarity=0.283  Sum_probs=58.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC--EEEcCCCHHHHHHhc-------CCccEEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD--SFLVSRDQDEMQAAM-------GTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~-------~~~d~v~  111 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++++..  ...|..+++.++++.       +++|+++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilV   84 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   84 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            6899999997 89999999998889999999999998888887776632  224556655544432       4799999


Q ss_pred             EcCCC
Q 027664          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        85 nnAG~   89 (250)
T d1ydea1          85 NNAGH   89 (250)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            99874

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=98.13  E-value=6.8e-06  Score=60.75  Aligned_cols=76  Identities=16%  Similarity=0.277  Sum_probs=58.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC---C--EEEcCCCHHHHHHh-------cCCc
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---D--SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~---~--~~~~~~~~~~~~~~-------~~~~  107 (220)
                      -+|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++++.   .  ...|..+++.++++       .+.+
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   83 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence            36899999997 8999999998888999999999999888888777653   1  12355665544433       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        84 D~lVnnAG~   92 (268)
T d2bgka1          84 DIMFGNVGV   92 (268)
T ss_dssp             CEEEECCCC
T ss_pred             ceecccccc
Confidence            999999874

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.12  E-value=8.2e-06  Score=59.67  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      +++.+||.|+ +++|.++++.+...|++|+++++++++.+++.+++   |.+   ...|..+++.++++       .+++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   88 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV   88 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence            5788999997 89999999988889999999999988776655443   432   22355665544333       2489


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        89 Dilvnnag~   97 (251)
T d2c07a1          89 DILVNNAGI   97 (251)
T ss_dssp             CEEEECCCC
T ss_pred             eeeeecccc
Confidence            999998876

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.11  E-value=1.2e-05  Score=55.28  Aligned_cols=96  Identities=14%  Similarity=0.167  Sum_probs=69.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEc-C-CCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV-S-RDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~-~-~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      +++|+|+|+|.+|..+++.+...|.+|++++++.++.+.+.+.++...... . .............|.++.+.......
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~   81 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA   81 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhh
Confidence            578999999999999999888889999999999998888877666433321 1 22333444455788898888766545


Q ss_pred             HHHHhccccCCEEEEeCC
Q 027664          121 MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~  138 (220)
                      .....+...+..++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~   99 (182)
T d1e5qa1          82 TVIKSAIRQKKHVVTTSY   99 (182)
T ss_dssp             HHHHHHHHHTCEEECSSC
T ss_pred             HHHHHHHhhccceeeccc
Confidence            555566666777766543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=98.10  E-value=5.2e-06  Score=61.67  Aligned_cols=75  Identities=27%  Similarity=0.342  Sum_probs=59.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccEE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++++.+.   ..|..+.+.++++       .+.+|++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idil   83 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTL   83 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCcccc
Confidence            5899999997 899999999998899999999999988888878777432   2355555444333       2489999


Q ss_pred             EEcCCC
Q 027664          111 IDTVSA  116 (220)
Q Consensus       111 ~d~~g~  116 (220)
                      ++++|.
T Consensus        84 vnnAG~   89 (276)
T d1bdba_          84 IPNAGI   89 (276)
T ss_dssp             ECCCCC
T ss_pred             cccccc
Confidence            999873

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.08  E-value=5e-06  Score=59.28  Aligned_cols=101  Identities=31%  Similarity=0.319  Sum_probs=69.6

Q ss_pred             HHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHH---HHcCCCEE-EcCCCHHHHHHhcCCccE
Q 027664           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGADSF-LVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~---~~~g~~~~-~~~~~~~~~~~~~~~~d~  109 (220)
                      +..+ .+++|++||.+|+| .|..++.+++..|.+|+.+...++-.+.+.   +.+|.+.+ +...+-.......+.||.
T Consensus        71 l~~L-~l~~g~~VLeIGsG-sGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~  148 (215)
T d1jg1a_          71 LEIA-NLKPGMNILEVGTG-SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDV  148 (215)
T ss_dssp             HHHH-TCCTTCCEEEECCT-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHhh-ccCccceEEEecCC-CChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCccee
Confidence            4444 48999999999987 488888888888888999999876444332   34565333 222222111111237999


Q ss_pred             EEEcCCCcccHHHHHhccccCCEEEEe
Q 027664          110 IIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       110 v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      ++-+.+-....+.+++.|++||+++..
T Consensus       149 Iiv~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         149 IIVTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             EEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             EEeecccccCCHHHHHhcCCCCEEEEE
Confidence            987766665678899999999999874

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=98.07  E-value=1.1e-05  Score=58.72  Aligned_cols=100  Identities=23%  Similarity=0.350  Sum_probs=73.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE---EcCCCHHHHHHh-------cCCccE
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~-------~~~~d~  109 (220)
                      -.|+++||.|+ +++|.++++-+...|++|+++.++.++.++..++++.+..   .|-++++.++++       .+++|+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDi   82 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   82 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence            36899999997 8999999999999999999999999988888888886433   355555544433       247999


Q ss_pred             EEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          110 IIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .++++|...                         ..+.....+.+++.++.++...
T Consensus        83 LinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a  138 (241)
T d2a4ka1          83 VAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA  138 (241)
T ss_dssp             EEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred             eccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccc
Confidence            999887531                         1133456677777777765543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=6.1e-06  Score=59.31  Aligned_cols=97  Identities=27%  Similarity=0.251  Sum_probs=65.5

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHc---CC-----C-EEEcCCCHHHHHHhcCCc
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL---GA-----D-SFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~---g~-----~-~~~~~~~~~~~~~~~~~~  107 (220)
                      .+++|++||.+|+|. |..++.+++..|.  +|+.++..++..+.+.+.+   +.     . ..+-..+-.......+.|
T Consensus        73 ~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~f  151 (224)
T d1i1na_          73 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPY  151 (224)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCE
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhh
Confidence            479999999999974 8888888888663  8999999987655543332   21     1 111111111100112379


Q ss_pred             cEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664          108 DGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       108 d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      |.|+-+..-....+.+++.|++||+++..
T Consensus       152 D~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         152 DAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             EEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            99987776666678899999999999874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.1e-05  Score=59.01  Aligned_cols=76  Identities=17%  Similarity=0.223  Sum_probs=57.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-----CC---EEEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-----AD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-----~~---~~~~~~~~~~~~~~-------~~  105 (220)
                      .|+++||.|+ +++|.++++.+...|++|++++++.++.++..+++.     ..   ...|..+++.++++       .+
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            5899999997 899999999999999999999999888776655542     11   22356665544433       24


Q ss_pred             CccEEEEcCCCc
Q 027664          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~v~d~~g~~  117 (220)
                      ++|++++++|..
T Consensus        82 ~iDilVnnAg~~   93 (254)
T d2gdza1          82 RLDILVNNAGVN   93 (254)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CcCeeccccccc
Confidence            799999999864

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=3.6e-05  Score=53.31  Aligned_cols=107  Identities=16%  Similarity=0.168  Sum_probs=69.7

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHH---HHHcC----C-CEEEcCCCHHHHHH
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA---VERLG----A-DSFLVSRDQDEMQA  102 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~---~~~~g----~-~~~~~~~~~~~~~~  102 (220)
                      .+++..+.--.+++|+|+|+|+.|.+++..+...|+ +++++.++.++.+.+   ++.++    . ....+..+.+.+.+
T Consensus         7 ~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE   86 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred             HHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence            445555432467899999999999999988888898 888888887654432   22222    1 23345555555555


Q ss_pred             hcCCccEEEEcCCCcc------cHHHHHhccccCCEEEEeCC
Q 027664          103 AMGTMDGIIDTVSAVH------PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       103 ~~~~~d~v~d~~g~~~------~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ....+|++++|++-..      .+..-...+.++..++.+-.
T Consensus        87 ~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y  128 (182)
T d1vi2a1          87 ALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVY  128 (182)
T ss_dssp             HHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCC
T ss_pred             hhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhc
Confidence            5568999999986321      11112345677777777643

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.02  E-value=4.6e-05  Score=48.38  Aligned_cols=95  Identities=9%  Similarity=-0.057  Sum_probs=65.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccc-hHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      .|++|||+|+|.+|..-++.+...|++|++++..... ...+.+.-+.+..-..-+++    ...++++|+-|.+.+..-
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~----dl~~~~lv~~at~d~~~n   86 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET----LLDSCWLAIAATDDDTVN   86 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGG----GGTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHH----HhCCCcEEeecCCCHHHH
Confidence            5789999999999999999999999999988876543 22222222233222111111    124789999999987544


Q ss_pred             HHHHhccccCCEEEEeCCCC
Q 027664          121 MPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .......++.|.+|.+....
T Consensus        87 ~~i~~~a~~~~ilVNv~D~p  106 (113)
T d1pjqa1          87 QRVSDAAESRRIFCNVVDAP  106 (113)
T ss_dssp             HHHHHHHHHTTCEEEETTCT
T ss_pred             HHHHHHHHHcCCEEEeCCCh
Confidence            56778888899999876543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=98.01  E-value=1e-05  Score=59.20  Aligned_cols=75  Identities=17%  Similarity=0.194  Sum_probs=57.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-----CEEEcCCCHHHHHHh-------cCCcc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-----DSFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~-------~~~~d  108 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+.++.     ....|..+++.++++       .+++|
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD   84 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCce
Confidence            5899999997 8999999999888999999999998888877776642     122355555544332       24899


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++++++|.
T Consensus        85 iLVnnAg~   92 (251)
T d1zk4a1          85 TLVNNAGI   92 (251)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999876

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=98.00  E-value=1.4e-05  Score=58.79  Aligned_cols=75  Identities=13%  Similarity=0.231  Sum_probs=56.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+.+   |.+   ...|..+++.++++       .+++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            6899999997 89999999988889999999999988776665443   432   22355565544333       2489


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        84 DilVnnaG~   92 (260)
T d1zema1          84 DFLFNNAGY   92 (260)
T ss_dssp             CEEEECCCC
T ss_pred             Ceehhhhcc
Confidence            999999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.99  E-value=1.9e-05  Score=56.59  Aligned_cols=98  Identities=19%  Similarity=0.084  Sum_probs=65.4

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--CEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      ...+++|++||-+|+| .|..++.+++. +.+|+.++..++..+.+.+.+..  ...+...+-...-...+.||.|+-+.
T Consensus        65 ~L~l~~g~~VLdIG~G-sGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~  142 (224)
T d1vbfa_          65 ELDLHKGQKVLEIGTG-IGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWA  142 (224)
T ss_dssp             HTTCCTTCEEEEECCT-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             HhhhcccceEEEecCC-CCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhc
Confidence            3448999999999997 47777777776 56999999888766655444331  11111112111001123699998766


Q ss_pred             CCcccHHHHHhccccCCEEEEe
Q 027664          115 SAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       115 g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      +-+...+.+++.|++||+++..
T Consensus       143 a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         143 TAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             BBSSCCHHHHHTEEEEEEEEEE
T ss_pred             chhhhhHHHHHhcCCCCEEEEE
Confidence            6555677889999999999875

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=5.3e-06  Score=60.50  Aligned_cols=76  Identities=18%  Similarity=0.224  Sum_probs=57.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHh---cCCccEEEEcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAA---MGTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---~~~~d~v~d~~g~  116 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+..+... ..|....+.++..   .++.|.++++.|.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ag~   84 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAGF   84 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEecccc
Confidence            6799999997 899999999999999999999999888777755555432 2344444443333   3489999999886


Q ss_pred             c
Q 027664          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      .
T Consensus        85 ~   85 (245)
T d2ag5a1          85 V   85 (245)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.1e-05  Score=57.02  Aligned_cols=95  Identities=16%  Similarity=0.194  Sum_probs=66.7

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCCccc-
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVHP-  119 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~~~~-  119 (220)
                      .++|+|.|+ |.+|..++..+...|.+|++++++.++.... ...+.+.+ .|..+.+.+.+...+.|+||.++|.... 
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~-~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~~~   81 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDL   81 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc-cccccccccccccchhhHHHHhcCCCEEEEEeccCCch
Confidence            478999997 9999999988888899999999998765433 22344433 2555667777777899999999986321 


Q ss_pred             ---------HHHHHhccccC--CEEEEeCC
Q 027664          120 ---------LMPLIGLLKSQ--GKLVLLGA  138 (220)
Q Consensus       120 ---------~~~~~~~l~~~--G~~v~~g~  138 (220)
                               ...+++.++..  .+++.++.
T Consensus        82 ~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          82 SPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             hhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence                     12344455444  47776654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.97  E-value=3.8e-05  Score=50.21  Aligned_cols=74  Identities=15%  Similarity=0.131  Sum_probs=59.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHhc-CCccEEEEcCCCcc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVH  118 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~d~v~d~~g~~~  118 (220)
                      +|+|.|+|.+|..+++.+...|.+|++++.++++.+++...++...+. |..+++.+++.. +.+|.++-++++++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~   77 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE   77 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH
Confidence            689999999999999999999999999999998888776667765443 445566666653 48999999888764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.95  E-value=1.4e-05  Score=58.60  Aligned_cols=76  Identities=20%  Similarity=0.266  Sum_probs=56.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE---EEcCCCHHHHHHh-------c-CC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------M-GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~-------~-~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|+.+++++++.+++.+.   .+...   ..|..+.+.++++       . +.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~   84 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   84 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            6899999997 8999999999999999999999998776665444   34322   2355555544332       2 35


Q ss_pred             ccEEEEcCCCc
Q 027664          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~v~d~~g~~  117 (220)
                      .|++++++|..
T Consensus        85 idilinnag~~   95 (258)
T d1ae1a_          85 LNILVNNAGVV   95 (258)
T ss_dssp             CCEEEECCCCC
T ss_pred             cEEEecccccc
Confidence            89999998864

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.94  E-value=1.3e-05  Score=59.30  Aligned_cols=75  Identities=19%  Similarity=0.319  Sum_probs=56.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC------CEEEcCCCHHHHHHh-------c
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA------DSFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~------~~~~~~~~~~~~~~~-------~  104 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+.+   +.      ....|..+++.++++       .
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5789999997 89999999999999999999999988777665543   21      122355665544433       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++++++|.
T Consensus        84 g~iDilvnnAG~   95 (272)
T d1xkqa_          84 GKIDVLVNNAGA   95 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCceEEEeCCcc
Confidence            479999999875

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.93  E-value=4.4e-06  Score=60.91  Aligned_cols=95  Identities=17%  Similarity=0.244  Sum_probs=65.1

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHc---C-CCE-EEcCCCHHHHHHhc-CCccEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL---G-ADS-FLVSRDQDEMQAAM-GTMDGI  110 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~---g-~~~-~~~~~~~~~~~~~~-~~~d~v  110 (220)
                      .++||++||-.|+|. |.++..+|+..|.  +|+.++.+++..+.+.+.+   + ... .+...+..  +.+. +.||.|
T Consensus        82 ~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~--~~~~~~~fD~V  158 (250)
T d1yb2a1          82 GLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA--DFISDQMYDAV  158 (250)
T ss_dssp             CCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT--TCCCSCCEEEE
T ss_pred             CCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeee--cccccceeeee
Confidence            479999999999875 7788888887653  8999999988776665543   2 211 11122211  1112 269988


Q ss_pred             EEcCCC-cccHHHHHhccccCCEEEEe
Q 027664          111 IDTVSA-VHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       111 ~d~~g~-~~~~~~~~~~l~~~G~~v~~  136 (220)
                      |--... ...++.+.+.|++||+++.+
T Consensus       159 ~ld~p~p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         159 IADIPDPWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             EECCSCGGGSHHHHHHTEEEEEEEEEE
T ss_pred             eecCCchHHHHHHHHHhcCCCceEEEE
Confidence            744443 34688999999999999876

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.5e-05  Score=59.66  Aligned_cols=76  Identities=21%  Similarity=0.281  Sum_probs=56.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc--------CCCE---EEcCCCHHHHHHh-----
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--------GADS---FLVSRDQDEMQAA-----  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~--------g~~~---~~~~~~~~~~~~~-----  103 (220)
                      -+|+++||.|+ +++|.++++.+...|++|++++++.++.+...+++        +...   ..|..+++.++++     
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            47899999997 89999999988889999999999988776655443        2222   2355565544433     


Q ss_pred             --cCCccEEEEcCCC
Q 027664          104 --MGTMDGIIDTVSA  116 (220)
Q Consensus       104 --~~~~d~v~d~~g~  116 (220)
                        .+++|++++++|.
T Consensus        90 ~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          90 DTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCeEEEEeeccc
Confidence              2479999999875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.92  E-value=6.5e-05  Score=54.77  Aligned_cols=95  Identities=23%  Similarity=0.290  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCCEEEcCCCHHHHHHh-cCCccEEEEcCC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADSFLVSRDQDEMQAA-MGTMDGIIDTVS  115 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~-~~~~d~v~d~~g  115 (220)
                      .++|++||=+|+|. |..++.+++ .|++|++++.++...+.+.+   ..+.+..+-..+...  .. .+.||+|+-...
T Consensus       118 ~~~g~~VLDiGcGs-G~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~--~~~~~~fD~V~ani~  193 (254)
T d2nxca1         118 LRPGDKVLDLGTGS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA--ALPFGPFDLLVANLY  193 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH--HGGGCCEEEEEEECC
T ss_pred             cCccCEEEEcccch-hHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc--cccccccchhhhccc
Confidence            58999999999974 776665554 68999999999987666543   234432222222221  12 247999985443


Q ss_pred             Cc---ccHHHHHhccccCCEEEEeCC
Q 027664          116 AV---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       116 ~~---~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ..   ..+..+.+.|++||++++.|.
T Consensus       194 ~~~l~~l~~~~~~~LkpGG~lilSgi  219 (254)
T d2nxca1         194 AELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccHHHHHHHHHHhcCCCcEEEEEec
Confidence            32   124567789999999998653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1.8e-05  Score=57.57  Aligned_cols=101  Identities=14%  Similarity=0.281  Sum_probs=70.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC---EEEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~-------~~~~  107 (220)
                      .|+++||.|+ +++|..++..+...|++|++++++.++.+++.++   .|.+   ...|.++.+.++++       .+.+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i   85 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV   85 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            5899999997 8999999988888899999999999877666554   3332   23455665443332       2479


Q ss_pred             cEEEEcCCCcc-------------------------cHHHHHhcccc--CCEEEEeCCCCCC
Q 027664          108 DGIIDTVSAVH-------------------------PLMPLIGLLKS--QGKLVLLGAPEKP  142 (220)
Q Consensus       108 d~v~d~~g~~~-------------------------~~~~~~~~l~~--~G~~v~~g~~~~~  142 (220)
                      |++++++|...                         ..+.++..|.+  .|+++.++...+.
T Consensus        86 dilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~  147 (244)
T d1yb1a_          86 SILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGH  147 (244)
T ss_dssp             SEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-C
T ss_pred             ceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhc
Confidence            99999998641                         01234455544  5789988776543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=1e-05  Score=59.91  Aligned_cols=97  Identities=25%  Similarity=0.404  Sum_probs=67.6

Q ss_pred             CCEE-EEEcc-chhHHHHHH-HHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------cCC
Q 027664           43 GMHV-GVVGL-GGLGHVAVK-FAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        43 ~~~v-lI~G~-g~~G~~~~~-la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      |++| ||.|+ +++|+.+++ +++..|++|+.++++.++.+++++++   +.+   ...|.++.+.++++       .++
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~   81 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   81 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            5666 77787 899999886 56667899999999998877766554   321   22355665544433       247


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCC
Q 027664          107 MDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +|++++.+|-..                         ..+.++..|++.|+++.++..
T Consensus        82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~  139 (275)
T d1wmaa1          82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  139 (275)
T ss_dssp             EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence            999999988521                         123456777888999988753

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.91  E-value=5.2e-05  Score=55.56  Aligned_cols=100  Identities=14%  Similarity=0.232  Sum_probs=66.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-chHHHH----HHcCCCEE---EcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAV----ERLGADSF---LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~~----~~~g~~~~---~~~~~~~~~~~~-------~~  105 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++. +.+.+.    +..|....   .|..+++.++++       .+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            6889999997 89999999988899999999998753 333332    23344333   355555544433       24


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhcccc--CCEEEEeCCCCC
Q 027664          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKS--QGKLVLLGAPEK  141 (220)
Q Consensus       106 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~~--~G~~v~~g~~~~  141 (220)
                      ++|++++++|...                         ..+.++..+.+  +|+++.++...+
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~  145 (260)
T d1x1ta1          83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHG  145 (260)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccc
Confidence            7999999988631                         11334455543  589998876543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.90  E-value=1.1e-05  Score=59.26  Aligned_cols=75  Identities=23%  Similarity=0.325  Sum_probs=56.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHH----HcCCC---EEEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE----RLGAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~----~~g~~---~~~~~~~~~~~~~~-------~~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|++++++.++..+..+    .+|.+   ...|..+++.++++       .++
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   87 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999997 899999999998999999999999887655443    34543   22455666544433       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        88 iDilVnnAg~   97 (260)
T d1h5qa_          88 ISGLIANAGV   97 (260)
T ss_dssp             EEEEEECCCC
T ss_pred             CcEecccccc
Confidence            9999999875

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=0.00028  Score=47.33  Aligned_cols=104  Identities=15%  Similarity=0.195  Sum_probs=76.5

Q ss_pred             hhhHHHh-hcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCcc
Q 027664           30 VYSPLRF-YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        30 a~~~l~~-~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d  108 (220)
                      .+.++.+ ....-.|++++|.|-|-+|.-+++.++.+|++|++++..+.+..++. .-|. .+.      .+++.....|
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-~dG~-~v~------~~~~a~~~ad   81 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA-MEGY-EVT------TMDEACQEGN   81 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTC-EEC------CHHHHTTTCS
T ss_pred             HHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh-cCce-Eee------ehhhhhhhcc
Confidence            3444443 34445899999999999999999999999999999999986544442 2233 222      1445555789


Q ss_pred             EEEEcCCCcc-cHHHHHhccccCCEEEEeCCCCC
Q 027664          109 GIIDTVSAVH-PLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       109 ~v~d~~g~~~-~~~~~~~~l~~~G~~v~~g~~~~  141 (220)
                      +++-|+|+.. .-.+-++.|+++..++.+|....
T Consensus        82 ivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd~  115 (163)
T d1li4a1          82 IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDV  115 (163)
T ss_dssp             EEEECSSCSCSBCHHHHTTCCTTEEEEECSSSTT
T ss_pred             EEEecCCCccchhHHHHHhccCCeEEEEeccccc
Confidence            9999999864 34578889999998888876553

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.89  E-value=4.3e-05  Score=55.94  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=55.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-----CCCE---EEcCCCHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-----g~~~---~~~~~~~~~~~~~-------~~  105 (220)
                      .|+++||.|+ +++|.++++.+...|++|++++++.++.++..+.+     +...   ..|..+++.++++       .+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            5789999997 89999999999999999999999987766554432     2221   2366666554433       24


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus        83 ~iDiLVnnAG~   93 (258)
T d1iy8a_          83 RIDGFFNNAGI   93 (258)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999999873

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.88  E-value=2.1e-08  Score=68.93  Aligned_cols=50  Identities=8%  Similarity=-0.092  Sum_probs=41.3

Q ss_pred             CcccccceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEcc
Q 027664            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL   51 (220)
Q Consensus         1 ~~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~   51 (220)
                      +++|++.++++|+++|+++||++++.++|+|.++.... ...+++|||.|+
T Consensus       105 ~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~~-~~~~~~Vli~ga  154 (162)
T d1tt7a1         105 ASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLEET-PGALKDILQNRI  154 (162)
T ss_dssp             EEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECSTTH-HHHHHHTTTTCC
T ss_pred             EEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEECC
Confidence            36899999999999999999999999999998865433 345577787776

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=1.3e-05  Score=58.67  Aligned_cols=75  Identities=19%  Similarity=0.315  Sum_probs=56.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE---EEcCCCHHHHHHh-------cCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~-------~~~~  107 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++   .|.+.   ..|..+++.++++       .+++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i   89 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            6899999997 8999999999989999999999998776665443   34322   2355555544332       2479


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        90 DilvnnAG~   98 (255)
T d1fmca_          90 DILVNNAGG   98 (255)
T ss_dssp             CEEEECCCC
T ss_pred             CEeeeCCcC
Confidence            999999886

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.85  E-value=1.8e-05  Score=58.29  Aligned_cols=75  Identities=16%  Similarity=0.280  Sum_probs=55.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC------CEEEcCCCHHHHHHh-------c
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA------DSFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~------~~~~~~~~~~~~~~~-------~  104 (220)
                      +|+.+||.|+ +++|.++++.+...|++|+++++++++.+++.+++   +.      ....|..+++.++++       .
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5789999997 89999999998889999999999988776665543   21      122355665544433       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++++++|.
T Consensus        84 g~iDilvnnAG~   95 (264)
T d1spxa_          84 GKLDILVNNAGA   95 (264)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEeeccccc
Confidence            479999999874

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.85  E-value=2.5e-05  Score=57.26  Aligned_cols=74  Identities=18%  Similarity=0.251  Sum_probs=55.2

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE---EEcCCCHHHHHHh-------cCCcc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~-------~~~~d  108 (220)
                      |+.+||.|+ +++|.++++.+...|++|+++++++++.++..++   .|.+.   ..|..+++.++++       .+++|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            678899997 8999999998888999999999998876665544   34332   2355565544433       24799


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      ++++++|.
T Consensus        82 ilVnnAG~   89 (257)
T d2rhca1          82 VLVNNAGR   89 (257)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999886

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.84  E-value=2.5e-05  Score=57.31  Aligned_cols=75  Identities=16%  Similarity=0.205  Sum_probs=55.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCCE---EEcCCCHHHHHHh-------cC-C
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MG-T  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~~---~~~~~~~~~~~~~-------~~-~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.++..+++   +...   ..|..+++.++++       .+ .
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~   86 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   86 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            6899999997 89999999988889999999999988777665544   3322   2355555443322       13 5


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        87 idilvnnAG~   96 (259)
T d2ae2a_          87 LNILVNNAGI   96 (259)
T ss_dssp             CCEEEECCCC
T ss_pred             ceEEEECCce
Confidence            9999999885

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.84  E-value=1.8e-05  Score=58.53  Aligned_cols=75  Identities=19%  Similarity=0.336  Sum_probs=55.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC------CEEEcCCCHHHHHHh-------c
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA------DSFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~------~~~~~~~~~~~~~~~-------~  104 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+++   +.      ....|..+++.++++       .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            5899999997 89999999988889999999999988776665443   22      122355665544433       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++++++|.
T Consensus        83 G~iDilVnnAG~   94 (274)
T d1xhla_          83 GKIDILVNNAGA   94 (274)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCceEEEeeccc
Confidence            479999999874

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.83  E-value=4.9e-05  Score=55.63  Aligned_cols=98  Identities=21%  Similarity=0.223  Sum_probs=67.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHH---HHcCCCEE---EcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAV---ERLGADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~---~~~g~~~~---~~~~~~~~~~~~-------~~~  106 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++.++.++ .+...   ++.|.+..   .|..+++.++++       .++
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   84 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcCC
Confidence            5899999997 899999999999999999987666543 33332   34555332   355555444332       247


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCC
Q 027664          107 MDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +|++++++|...                         ..+.++..++++|+++.+...
T Consensus        85 idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~  142 (259)
T d1ja9a_          85 LDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI  142 (259)
T ss_dssp             EEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccc
Confidence            999999998631                         124456777888888777654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.82  E-value=2.6e-05  Score=58.25  Aligned_cols=75  Identities=20%  Similarity=0.275  Sum_probs=55.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH----cCCCEE---EcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LGADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~----~g~~~~---~~~~~~~~~~~~-------~~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.++..++    .|....   .|..+.+.+++.       .++
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  103 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  103 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccc
Confidence            5799999997 9999999998889999999999998776555443    343222   345555544332       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus       104 iDilvnnAg~  113 (294)
T d1w6ua_         104 PNIVINNAAG  113 (294)
T ss_dssp             CSEEEECCCC
T ss_pred             cchhhhhhhh
Confidence            9999999886

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=5.3e-05  Score=55.31  Aligned_cols=99  Identities=22%  Similarity=0.297  Sum_probs=65.6

Q ss_pred             CCCEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCccchHHH---HHHcCCCEE--EcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSKKSEA---VERLGADSF--LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g--~~G~~~~~la~~~g~~vi~~~~~~~~~~~~---~~~~g~~~~--~~~~~~~~~~~~-------~~~  106 (220)
                      +|+++||.|+ |  ++|.++++.+...|++|+++.++++..+..   .+..+....  .|..+++.++++       .++
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence            6899999997 5  799999988888899999988886543332   223333223  355555444433       247


Q ss_pred             ccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          107 MDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +|++++++|...                             ..+.+...++++|+++.++...
T Consensus        87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~  149 (256)
T d1ulua_          87 LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYA  149 (256)
T ss_dssp             EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGG
T ss_pred             ceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehH
Confidence            999999987520                             0022345677789998887654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.81  E-value=6.6e-05  Score=54.56  Aligned_cols=75  Identities=15%  Similarity=0.250  Sum_probs=55.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHHHHcCCCE---EEcCCCHHHHHHh-------cCCccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~~~~g~~~---~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      +|+.+||.|+ +++|.++++.+...|++|+++++++.+ .+...+.+|.+.   ..|-++++.++++       .+++|+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDi   83 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999997 899999999999999999999987643 344445666432   2355665544433       247999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus        84 lVnnAG~   90 (247)
T d2ew8a1          84 LVNNAGI   90 (247)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999886

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=7.2e-05  Score=45.68  Aligned_cols=70  Identities=23%  Similarity=0.247  Sum_probs=48.4

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccc--hHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK--KSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      .|++|+|+|.|..|+.+++++...|++|++.+.+...  ..++ + .+....+...+...+    ..+|.++-+-|-+
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~-~-~~~~~~~~~~~~~~~----~~~d~vi~SPGi~   75 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKL-P-EAVERHTGSLNDEWL----MAADLIVASPGIA   75 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGS-C-TTSCEEESBCCHHHH----HHCSEEEECTTSC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHH-h-hccceeecccchhhh----ccCCEEEECCCCC
Confidence            4788999999999999999999999999999986542  2211 1 123333333333322    2578888877765

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=7e-05  Score=56.10  Aligned_cols=99  Identities=19%  Similarity=0.273  Sum_probs=65.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc---------chHHHHHH---cCCCEEEcCCCHHHHH----Hh-
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS---------KKSEAVER---LGADSFLVSRDQDEMQ----AA-  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~---------~~~~~~~~---~g~~~~~~~~~~~~~~----~~-  103 (220)
                      .|+++||.|+ +++|.++++.+...|++|++.+.+.+         ..++..+.   .+.....+..+.+..+    .. 
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence            5899999997 89999999999999999999875432         22333222   3344455655543322    22 


Q ss_pred             --cCCccEEEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEeCCCC
Q 027664          104 --MGTMDGIIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAPE  140 (220)
Q Consensus       104 --~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~G~~v~~g~~~  140 (220)
                        .+++|++++++|...                         ..+.++..|+  .+|+||.++...
T Consensus        86 ~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~  151 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASAS  151 (302)
T ss_dssp             HHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHH
T ss_pred             HHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChh
Confidence              247999999988531                         1133455553  458999987643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.78  E-value=0.00017  Score=53.01  Aligned_cols=100  Identities=21%  Similarity=0.255  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHH---HHcCCCEE---EcCCCHHHHHHh-------cC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAV---ERLGADSF---LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~---~~~g~~~~---~~~~~~~~~~~~-------~~  105 (220)
                      -+|+++||.|+ +++|.++++.+...|++|++++++.++ .+++.   ++.+.+..   .|..+++.++++       .+
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            35899999997 999999999999999999998877543 23332   34454333   345555443332       24


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ++|+++++.|...                         ..+.+...|.+.|+++.++...
T Consensus        96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~  155 (272)
T d1g0oa_          96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT  155 (272)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred             CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccc
Confidence            7999999887631                         1244567788889888886543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.78  E-value=2.2e-05  Score=53.88  Aligned_cols=100  Identities=19%  Similarity=0.168  Sum_probs=63.6

Q ss_pred             HHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--C-EEEcCCCHHHHHHhcCCccE
Q 027664           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--D-SFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~-~~~~~~~~~~~~~~~~~~d~  109 (220)
                      ++.......++++|+|+|+|+.+.+++..+...+.+++++.++.++.+.+.+.++.  + ......  +   .....+|+
T Consensus         8 ~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~--~---~~~~~~di   82 (171)
T d1p77a1           8 DLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD--S---IPLQTYDL   82 (171)
T ss_dssp             HHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--G---CCCSCCSE
T ss_pred             HHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhc--c---ccccccce
Confidence            45444434578999999999999999887777667999999999888877776652  1 111111  0   11247999


Q ss_pred             EEEcCCCccc---HHHHHhccccCCEEEEeC
Q 027664          110 IIDTVSAVHP---LMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       110 v~d~~g~~~~---~~~~~~~l~~~G~~v~~g  137 (220)
                      +++|++-...   .......++++..++.+-
T Consensus        83 iIN~tp~g~~~~~~~~~~~~~~~~~~~~D~v  113 (171)
T d1p77a1          83 VINATSAGLSGGTASVDAEILKLGSAFYDMQ  113 (171)
T ss_dssp             EEECCCC-------CCCHHHHHHCSCEEESC
T ss_pred             eeecccccccccccchhhhhhcccceeeeee
Confidence            9999875311   111223345566665553

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=4.3e-05  Score=55.43  Aligned_cols=105  Identities=22%  Similarity=0.215  Sum_probs=69.1

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCC--EEEcCCCHHHHHHhcC
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAMG  105 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~--~~~~~~~~~~~~~~~~  105 (220)
                      +..+.....+++|++||=+|||. |..+..+++..|++|+.++.++...+.+.+   ..|..  .-+...+.... ...+
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~   99 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANE   99 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSS
T ss_pred             HHHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccC
Confidence            44566666789999999999874 667778888889999999999876554422   34532  11222221111 1124


Q ss_pred             CccEEEEcC-----CC-cccHHHHHhccccCCEEEEeC
Q 027664          106 TMDGIIDTV-----SA-VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       106 ~~d~v~d~~-----g~-~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      .||.|+-.-     .+ ...+..+.+.|++||+++...
T Consensus       100 ~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         100 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            799887321     11 234677889999999998753

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.76  E-value=0.00018  Score=49.36  Aligned_cols=92  Identities=20%  Similarity=0.190  Sum_probs=62.0

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCC---------HHHHHHhcCCccEEEEcC
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD---------QDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~~~~~~~~~d~v~d~~  114 (220)
                      +++-|+|+|.+|++++..+...|.+|++.++++++.+.+. ..+.........         .....+....+|++|-|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ-DRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            6899999999999999999999999999999987776663 333221111100         122445556899999999


Q ss_pred             CCcc---cHHHHHhccccCCEEEEe
Q 027664          115 SAVH---PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       115 g~~~---~~~~~~~~l~~~G~~v~~  136 (220)
                      ....   .++++...+.++-.++..
T Consensus        81 ~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          81 PAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             chhHHHHHHHHhhhccCCCCEEEEe
Confidence            8763   233344555555555543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.76  E-value=2.3e-05  Score=57.45  Aligned_cols=75  Identities=21%  Similarity=0.270  Sum_probs=55.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh--------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA--------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~--------~~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|+.+++++++.++..+++   +..   ...|..+++.++++        .+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   86 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   86 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence            6899999997 89999999999899999999999988777665544   222   22355555433322        235


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        87 idilvnnAG~   96 (259)
T d1xq1a_          87 LDILINNLGA   96 (259)
T ss_dssp             CSEEEEECCC
T ss_pred             cccccccccc
Confidence            9999999886

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.74  E-value=2.4e-05  Score=54.48  Aligned_cols=97  Identities=14%  Similarity=0.102  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE---------cCCC--------HHHHH
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL---------VSRD--------QDEMQ  101 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~---------~~~~--------~~~~~  101 (220)
                      .+++|.+||..||| .|..+..+|+. |.+|++++.++...+.+.+..+.....         +...        .+...
T Consensus        17 ~~~~~~rvLd~GCG-~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~   94 (201)
T d1pjza_          17 NVVPGARVLVPLCG-KSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA   94 (201)
T ss_dssp             CCCTTCEEEETTTC-CSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH
T ss_pred             CCCCCCEEEEecCc-CCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc
Confidence            37899999999998 48888888875 999999999998877775554321110         0000        00001


Q ss_pred             HhcCCccEEEEcCCCc--------ccHHHHHhccccCCEEEEeC
Q 027664          102 AAMGTMDGIIDTVSAV--------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       102 ~~~~~~d~v~d~~g~~--------~~~~~~~~~l~~~G~~v~~g  137 (220)
                      .....+|.|++...-.        ..++.+.+.|++||++++..
T Consensus        95 ~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          95 RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            1123688888754421        23567888999999987654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.74  E-value=2.5e-05  Score=55.88  Aligned_cols=97  Identities=23%  Similarity=0.280  Sum_probs=59.8

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHH---HCC----CeEEEEeCCccchHHHHHHc--------CC-CEEEcCCCHHHHHH
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAK---AMG----VKVTVISTSPSKKSEAVERL--------GA-DSFLVSRDQDEMQA  102 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~---~~g----~~vi~~~~~~~~~~~~~~~~--------g~-~~~~~~~~~~~~~~  102 (220)
                      .+++|++||.+|+|. |..++.+++   ..|    .+|+.+...++-.+.+.+.+        +. ...+...+-...-.
T Consensus        77 ~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~  155 (223)
T d1r18a_          77 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP  155 (223)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc
Confidence            479999999999752 555554444   444    37999998876444432221        11 11121122111001


Q ss_pred             hcCCccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664          103 AMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       103 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      ..+.||.|+-+.+-+...+...+.|++||+++..
T Consensus       156 ~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         156 PNAPYNAIHVGAAAPDTPTELINQLASGGRLIVP  189 (223)
T ss_dssp             GGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             cccceeeEEEEeechhchHHHHHhcCCCcEEEEE
Confidence            1237999887776666678899999999999874

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=2.4e-05  Score=58.09  Aligned_cols=97  Identities=18%  Similarity=0.158  Sum_probs=65.7

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCC-CEE-EcCCCHHHHHHhcCCccEEE
Q 027664           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGA-DSF-LVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~-~~~-~~~~~~~~~~~~~~~~d~v~  111 (220)
                      ...+++|++||-+||| .|..++.+|+..|++|++++.+++..+.+.+   +.|. +.+ +...+.   +.+.+.||.++
T Consensus        57 ~l~l~~G~~VLDiGCG-~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~---~~~~~~fD~i~  132 (285)
T d1kpga_          57 KLGLQPGMTLLDVGCG-WGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---EQFDEPVDRIV  132 (285)
T ss_dssp             TTTCCTTCEEEEETCT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---GGCCCCCSEEE
T ss_pred             HcCCCCCCEEEEecCc-chHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh---hccccccccee
Confidence            3458999999999997 4788889999999999999999887655533   2332 111 222221   22234688764


Q ss_pred             -----EcCCCc---ccHHHHHhccccCCEEEEeC
Q 027664          112 -----DTVSAV---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       112 -----d~~g~~---~~~~~~~~~l~~~G~~v~~g  137 (220)
                           +.+|..   ..+..+.+.|++||++++-.
T Consensus       133 si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         133 SIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             EESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             eehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence                 445543   23677888999999998643

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=8.2e-06  Score=59.09  Aligned_cols=93  Identities=23%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCC--CHH---H----HHHhcC--CccE
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSR--DQD---E----MQAAMG--TMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~--~~~---~----~~~~~~--~~d~  109 (220)
                      +|++|||.|+ +++|.++++.+...|++|+.++..+.+..      .....+...  ..+   .    +.+..+  ++|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc------cccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            4799999997 89999999999999999999887654211      111111111  111   1    112212  6999


Q ss_pred             EEEcCCCcc--------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          110 IIDTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 v~d~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +++++|...                          ..+.++..++++|+++.++...
T Consensus        75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~  131 (236)
T d1dhra_          75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  131 (236)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHH
Confidence            999987410                          0133456778899999987654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.71  E-value=0.00062  Score=45.44  Aligned_cols=96  Identities=18%  Similarity=0.220  Sum_probs=74.7

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      ..+-.|++++|.|=|-+|.-+++-++.+|++|+++...+-+..++. .-|.. +.      .+++.....|+++-++|+.
T Consensus        18 ~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~-mdGf~-v~------~~~~a~~~aDi~vTaTGn~   89 (163)
T d1v8ba1          18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGFN-VV------TLDEIVDKGDFFITCTGNV   89 (163)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTCE-EC------CHHHHTTTCSEEEECCSSS
T ss_pred             CceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHH-hcCCc-cC------chhHccccCcEEEEcCCCC
Confidence            4356899999999999999999999999999999999986544442 22332 22      2455666889999999997


Q ss_pred             cc-HHHHHhccccCCEEEEeCCCCC
Q 027664          118 HP-LMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       118 ~~-~~~~~~~l~~~G~~v~~g~~~~  141 (220)
                      .. -.+-++.|+.+..++..|....
T Consensus        90 ~vI~~~h~~~MKdgaIl~N~GHfd~  114 (163)
T d1v8ba1          90 DVIKLEHLLKMKNNAVVGNIGHFDD  114 (163)
T ss_dssp             SSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred             ccccHHHHHHhhCCeEEEeccccch
Confidence            64 4567899999999999986553

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.69  E-value=6.1e-05  Score=55.02  Aligned_cols=73  Identities=19%  Similarity=0.264  Sum_probs=53.3

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE---EEcCCCHHHHHHh-------cCCccE
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~---~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      +.+||.|+ +++|.++++.+...|++|+++++++++.++..++   .|.+.   ..|..+++.++++       .+++|+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            34688997 8999999988888899999999998877666544   34322   2455665544433       247999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      +++++|.
T Consensus        82 lVnnAG~   88 (255)
T d1gega_          82 IVNNAGV   88 (255)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9999875

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.66  E-value=6.2e-05  Score=55.26  Aligned_cols=96  Identities=20%  Similarity=0.182  Sum_probs=67.2

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHHH---HcCC--CEEEcCCCHHHHHHhc-CCccE
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVE---RLGA--DSFLVSRDQDEMQAAM-GTMDG  109 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~~---~~g~--~~~~~~~~~~~~~~~~-~~~d~  109 (220)
                      ..+++|++||-.|+|+ |.++..+|+..|  .+|+.++.+++..+.+.+   .+|.  ...+...+..  ..+. ..+|.
T Consensus        99 l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~--~~~~~~~~D~  175 (266)
T d1o54a_          99 LDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS--EGFDEKDVDA  175 (266)
T ss_dssp             TTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG--GCCSCCSEEE
T ss_pred             hCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc--ccccccceee
Confidence            3489999999999975 888888999875  499999999887665543   3443  1122222211  1111 26888


Q ss_pred             EEEcCCCc-ccHHHHHhccccCCEEEEe
Q 027664          110 IIDTVSAV-HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       110 v~d~~g~~-~~~~~~~~~l~~~G~~v~~  136 (220)
                      |+--++.+ ..++.+.++|++||+++.+
T Consensus       176 V~~d~p~p~~~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         176 LFLDVPDPWNYIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             EEECCSCGGGTHHHHHHHEEEEEEEEEE
T ss_pred             eEecCCCHHHHHHHHHhhcCCCCEEEEE
Confidence            87666654 4689999999999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.65  E-value=3.4e-05  Score=50.49  Aligned_cols=74  Identities=19%  Similarity=0.317  Sum_probs=56.3

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHh-cCCccEEEEcCCCcc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~-~~~~d~v~d~~g~~~  118 (220)
                      ++++|+|.|.+|..+++.+...|.+|++++.++++.+++ +..+...++ |..+++.+++. ...+|.++=++++..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~-~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~   76 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-ASYATHAVIANATEENELLSLGIRNFEYVIVAIGANI   76 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHT-TTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHH-HHhCCcceeeecccchhhhccCCccccEEEEEcCchH
Confidence            357889999999999999999999999999999887777 455654333 44445556555 247899998888753

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.64  E-value=0.00015  Score=48.55  Aligned_cols=86  Identities=15%  Similarity=0.257  Sum_probs=65.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLI  124 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~  124 (220)
                      ++.++|+|.+|.+.+.-+...|.++++..++.++.+++.+++|....-   +   .++..+..|+||=|+-.. .+...+
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~---~---~~~~~~~~dvIilavkp~-~~~~vl   74 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAM---S---HQDLIDQVDLVILGIKPQ-LFETVL   74 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCS---S---HHHHHHTCSEEEECSCGG-GHHHHH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeec---h---hhhhhhccceeeeecchH-hHHHHh
Confidence            478899999999988866677889999999988888887788865331   2   223334789999999754 578888


Q ss_pred             hccccCCEEEEeC
Q 027664          125 GLLKSQGKLVLLG  137 (220)
Q Consensus       125 ~~l~~~G~~v~~g  137 (220)
                      ..+.++..++.+.
T Consensus        75 ~~l~~~~~iis~~   87 (152)
T d2ahra2          75 KPLHFKQPIISMA   87 (152)
T ss_dssp             TTSCCCSCEEECC
T ss_pred             hhcccceeEeccc
Confidence            8888877777654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=6.8e-05  Score=55.81  Aligned_cols=97  Identities=14%  Similarity=0.165  Sum_probs=65.1

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHH---HHcCCCEE--EcCCCHHHHHHhcCCccEEE
Q 027664           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGADSF--LVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~---~~~g~~~~--~~~~~~~~~~~~~~~~d~v~  111 (220)
                      ...+++|++||=+||| .|..+..+|+..|++|+.++.+++..+.+.   +..|....  +...+.   ....+.||.|+
T Consensus        56 ~l~l~~G~~VLDiGCG-~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~~~~~~fD~i~  131 (291)
T d1kpia_          56 KLNLEPGMTLLDIGCG-WGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEFDEPVDRIV  131 (291)
T ss_dssp             TTCCCTTCEEEEETCT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGCCCCCSEEE
T ss_pred             hcCCCCCCEEEEecCc-chHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---cccccccceEe
Confidence            3458999999999997 466778899999999999999987644332   33454211  111221   12234799875


Q ss_pred             -----EcCCCc----------ccHHHHHhccccCCEEEEeC
Q 027664          112 -----DTVSAV----------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       112 -----d~~g~~----------~~~~~~~~~l~~~G~~v~~g  137 (220)
                           +-++..          ..++.+.+.|+|||++++-.
T Consensus       132 sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         132 SLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             EESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             echhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence                 344431          24778899999999998644

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=6.9e-05  Score=47.30  Aligned_cols=66  Identities=18%  Similarity=0.249  Sum_probs=49.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE-EEcCCCHHHHHHhcC--CccEE
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMG--TMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~--~~d~v  110 (220)
                      .+.+|.|+|+|++|.+.++-|+.+|.++++.+.+++...   ....... +.++.+.+.+.++..  ++|++
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA---~~va~~~i~~~~~d~~~l~~~~~~~~~Dvi   78 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPA---MHVAHRSHVINMLDGDALRRVVELEKPHYI   78 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGG---GGGSSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCch---hhcCCeEEECCCCCHHHHHHHHHhhCCceE
Confidence            346799999999999999999999999999998876432   1233222 346677777776653  67888

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.63  E-value=0.00014  Score=53.27  Aligned_cols=75  Identities=19%  Similarity=0.229  Sum_probs=53.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hHHHH---HHcCCCE---EEcCCCHHHHHHh-------cCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAV---ERLGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~~~~---~~~g~~~---~~~~~~~~~~~~~-------~~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++.++.+. .+.+.   +..|.+.   ..|..+++.++++       .++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   85 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999997 899999999888899999999988643 33332   3455432   2355665544433       247


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      +|++++++|.
T Consensus        86 iDiLVnnAG~   95 (261)
T d1geea_          86 LDVMINNAGL   95 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEeecccee
Confidence            9999999876

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=2.7e-05  Score=57.74  Aligned_cols=98  Identities=13%  Similarity=0.192  Sum_probs=65.2

Q ss_pred             hhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCE-E-EcCCCHHHHHHhcCCccEE
Q 027664           36 FYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS-F-LVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        36 ~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~-~-~~~~~~~~~~~~~~~~d~v  110 (220)
                      ....+++|++||-+|+|. |..+..+++..|++|+.++.+++..+.+.+.   .|... + +...+   .....+.||.|
T Consensus        46 ~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d---~~~~~~~fD~i  121 (280)
T d2fk8a1          46 DKLDLKPGMTLLDIGCGW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQG---WEDFAEPVDRI  121 (280)
T ss_dssp             TTSCCCTTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESC---GGGCCCCCSEE
T ss_pred             HHcCCCCCCEEEEecCCc-hHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhh---hhhhccchhhh
Confidence            334589999999999974 5566778888899999999998876554332   34321 1 11111   12334578888


Q ss_pred             E-----EcCCCc---ccHHHHHhccccCCEEEEeC
Q 027664          111 I-----DTVSAV---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 ~-----d~~g~~---~~~~~~~~~l~~~G~~v~~g  137 (220)
                      +     +.++..   ..+..+.+.|+|||++++-.
T Consensus       122 ~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         122 VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence            5     334433   24677889999999998743

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=0.00011  Score=53.64  Aligned_cols=98  Identities=22%  Similarity=0.269  Sum_probs=67.4

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcC------C-CEEEcCCCHHHHHHhc-CC
Q 027664           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLG------A-DSFLVSRDQDEMQAAM-GT  106 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g------~-~~~~~~~~~~~~~~~~-~~  106 (220)
                      ...++||++||=.|+|+ |.++..+|+..|.  +|+.++.+++..+.+.+.+.      . +..+...+.... .+. +.
T Consensus        91 ~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~-~~~~~~  168 (264)
T d1i9ga_          91 EGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGS  168 (264)
T ss_dssp             HTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTC
T ss_pred             HhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc-cccCCC
Confidence            34489999999999874 8889999998764  89999999887666644321      1 222222221110 111 36


Q ss_pred             ccEEEEcCCCc-ccHHHHHhccccCCEEEEe
Q 027664          107 MDGIIDTVSAV-HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       107 ~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~  136 (220)
                      ||.||--+.++ ..+..+.+.|++||+++.+
T Consensus       169 fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~  199 (264)
T d1i9ga_         169 VDRAVLDMLAPWEVLDAVSRLLVAGGVLMVY  199 (264)
T ss_dssp             EEEEEEESSCGGGGHHHHHHHEEEEEEEEEE
T ss_pred             cceEEEecCCHHHHHHHHHhccCCCCEEEEE
Confidence            99887555553 4678899999999999886

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=4.5e-05  Score=55.14  Aligned_cols=70  Identities=20%  Similarity=0.191  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHh-------cCCccEEEEc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA-------MGTMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~d~v~d~  113 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.+.+     .....|..+++.++++       .+++|+++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~-----~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-----FGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS-----EEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCc-----eEEEEecCCHHHHHHHHHHHHHhcCCceEEEee
Confidence            5789999997 8999999999999999999999987654432     1233566666544433       2479999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        81 AG~   83 (237)
T d1uzma1          81 AGL   83 (237)
T ss_dssp             CSC
T ss_pred             ecc
Confidence            885

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.59  E-value=0.00024  Score=48.02  Aligned_cols=87  Identities=21%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC-CEEEcCCCHHHHHHhcCCccEEEEcCCCcc---cH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---PL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---~~  120 (220)
                      +|.|+|+|.+|...++.++..|.+|++.+++++..+++ ++.|. +...+..      +.....|+||-|+....   .+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a-~~~~~~~~~~~~~------~~~~~~DiIilavp~~~~~~vl   74 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-VERQLVDEAGQDL------SLLQTAKIIFLCTPIQLILPTL   74 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTSCSEEESCG------GGGTTCSEEEECSCHHHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHH-HHhhccceeeeec------ccccccccccccCcHhhhhhhh
Confidence            58899999999999988889999999999988777766 45664 4443221      22347899998886542   23


Q ss_pred             HHHHhccccCCEEEEeCC
Q 027664          121 MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~  138 (220)
                      ++....+.++..++.++.
T Consensus        75 ~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          75 EKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             HHHGGGSCTTCEEEECCS
T ss_pred             hhhhhhcccccceeeccc
Confidence            444455556666666643

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.57  E-value=0.00013  Score=52.97  Aligned_cols=74  Identities=15%  Similarity=0.103  Sum_probs=52.8

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcCCC---EEEcCCCHHHHHHh-------cC--Cc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MG--TM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~-------~~--~~  107 (220)
                      .++|||.|+ +++|.++++.+...|+  +|+.+.++.++.+++.+..+..   ...|..+.+.++++       .+  +.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            478999997 8999999987777786  7888999988888775544432   22355555433322       12  59


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      |++++++|.
T Consensus        83 dilinnAG~   91 (250)
T d1yo6a1          83 SLLINNAGV   91 (250)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999999984

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.57  E-value=0.0001  Score=52.70  Aligned_cols=101  Identities=23%  Similarity=0.229  Sum_probs=67.9

Q ss_pred             HHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcC---C-CEE-EcCCCHHHHHHhcCC
Q 027664           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLG---A-DSF-LVSRDQDEMQAAMGT  106 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g---~-~~~-~~~~~~~~~~~~~~~  106 (220)
                      +.... ++||++||=.|+|+ |..+..+++..|.  +|++++.++...+.+.+...   . ..+ .+....+........
T Consensus        66 l~~l~-i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~  143 (227)
T d1g8aa_          66 LKNFP-IKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCC-CCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred             ccccc-cCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccc
Confidence            33444 79999999999974 8889999998864  89999999887666644432   1 111 122222322223347


Q ss_pred             ccEEEEcCCCcc----cHHHHHhccccCCEEEEe
Q 027664          107 MDGIIDTVSAVH----PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       107 ~d~v~d~~g~~~----~~~~~~~~l~~~G~~v~~  136 (220)
                      +|+++..+....    .+..+...|+++|+++++
T Consensus       144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            888876554432    356677899999998875

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.55  E-value=0.00019  Score=51.79  Aligned_cols=97  Identities=12%  Similarity=0.176  Sum_probs=65.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCe-------EEEEeCCccchHHHHHHc---CCC---EEEcCCCHHHHHHh-------
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVK-------VTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------  103 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~-------vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~~-------  103 (220)
                      .|||.|+ +++|.++++.+...|++       |+..+++.++.+++.+++   |..   ...|.++++.++++       
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            3688897 89999999877777876       888899888776665543   332   12356665544433       


Q ss_pred             cCCccEEEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEeCCCCC
Q 027664          104 MGTMDGIIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAPEK  141 (220)
Q Consensus       104 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~--~~G~~v~~g~~~~  141 (220)
                      .+++|++++++|...                         ..+.++..|+  ++|+++.++...+
T Consensus        83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~  147 (240)
T d2bd0a1          83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAA  147 (240)
T ss_dssp             TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhh
Confidence            247999999988631                         1133455563  4689998876543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.0003  Score=50.90  Aligned_cols=48  Identities=19%  Similarity=0.326  Sum_probs=43.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD   89 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~   89 (220)
                      +|+.+||.|+ +++|.++++.+...|++|+.+++++++.+...++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Confidence            6899999997 89999999999999999999999999988888888753

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.54  E-value=0.00048  Score=49.39  Aligned_cols=72  Identities=17%  Similarity=0.185  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCC-HHHHHHhcCCccEEEEcCCCc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRD-QDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~-~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.    ++.+...+. |..+ .+.+.+..+.+|++++++|..
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l----~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~   77 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL----KRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGP   77 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----HhcCCcEEEcchHHHHHHHHHHhCCCcEEEeccccc
Confidence            5799999997 8999999999999999999999886433    445543332 3222 233334446899999998853

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.54  E-value=0.00016  Score=52.30  Aligned_cols=96  Identities=18%  Similarity=0.228  Sum_probs=63.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-ccchHHHHH---HcCCC---EEEcCCCHHHHHHh-------cCCccE
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVE---RLGAD---SFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~-~~~~~~~~~---~~g~~---~~~~~~~~~~~~~~-------~~~~d~  109 (220)
                      .+||.|+ +++|.++++.+...|++|++.+.+ +++.+.+.+   ..|.+   ...|..+++.++++       .+++|+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV   82 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence            5788887 899999999888999999887654 444443333   34432   22355665544433       247999


Q ss_pred             EEEcCCCcc-------------------------cHHHHHhcc--ccCCEEEEeCCCC
Q 027664          110 IIDTVSAVH-------------------------PLMPLIGLL--KSQGKLVLLGAPE  140 (220)
Q Consensus       110 v~d~~g~~~-------------------------~~~~~~~~l--~~~G~~v~~g~~~  140 (220)
                      +++++|...                         ..+.++..|  +++|+|+.++...
T Consensus        83 LVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~  140 (244)
T d1edoa_          83 VVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVV  140 (244)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred             cccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChh
Confidence            999988631                         113345555  4579999997654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00025  Score=52.01  Aligned_cols=76  Identities=24%  Similarity=0.230  Sum_probs=53.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCCEE---EcCCCHHHH-------HHhcC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADSF---LVSRDQDEM-------QAAMG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~~~---~~~~~~~~~-------~~~~~  105 (220)
                      -+|+++||.|+ +++|.++++.+...|++|+.++++.++.+++.+++    +....   .+..+.+..       .+..+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            46899999997 89999999988889999999999998877765432    32221   223333222       22234


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ..|+++++.|.
T Consensus        92 ~~~~li~nag~  102 (269)
T d1xu9a_          92 GLDMLILNHIT  102 (269)
T ss_dssp             SCSEEEECCCC
T ss_pred             Ccccccccccc
Confidence            78999887765

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.51  E-value=0.00028  Score=51.34  Aligned_cols=76  Identities=17%  Similarity=0.090  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCC----EEEcCC-CHHHHHHh-------cC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD----SFLVSR-DQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~----~~~~~~-~~~~~~~~-------~~  105 (220)
                      .|++|||.|+ +++|..++..+...|++|+++.++.++.+.+.+   ..+-.    ...|.. +.+.++++       .+
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g   83 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcC
Confidence            5899999997 899999999888889999999887766544422   22221    122333 33223222       24


Q ss_pred             CccEEEEcCCCc
Q 027664          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~v~d~~g~~  117 (220)
                      ++|++++++|..
T Consensus        84 ~iDilvnnAG~~   95 (254)
T d1sbya1          84 TVDILINGAGIL   95 (254)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEeCCCCC
Confidence            799999999863

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00012  Score=52.36  Aligned_cols=99  Identities=19%  Similarity=0.062  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE------------cCCCH------HHH
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL------------VSRDQ------DEM  100 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~------------~~~~~------~~~  100 (220)
                      .+.++.+||..|||. |..+..+|+ .|.+|++++.++...+.+.+..+.....            .....      ...
T Consensus        42 ~~~~~~rvLd~GCG~-G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~  119 (229)
T d2bzga1          42 KGKSGLRVFFPLCGK-AVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI  119 (229)
T ss_dssp             TTCCSCEEEETTCTT-CTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred             CCCCCCEEEEeCCCC-cHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence            367899999999985 888888876 5999999999998877776655432111            00000      001


Q ss_pred             HHh----cCCccEEEEcCCCc--------ccHHHHHhccccCCEEEEeCCC
Q 027664          101 QAA----MGTMDGIIDTVSAV--------HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       101 ~~~----~~~~d~v~d~~g~~--------~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ..+    .+.+|+|+++..-.        ..+..+.++|++||++++....
T Consensus       120 ~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         120 FDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             GGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             hhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            111    23689999875321        1356788999999998766543

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.48  E-value=4.3e-08  Score=68.15  Aligned_cols=57  Identities=18%  Similarity=0.186  Sum_probs=45.1

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHHh-hcCCCCCCEEEEEc-c-chhHHHHHH
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRF-YGLDKPGMHVGVVG-L-GGLGHVAVK   60 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~vlI~G-~-g~~G~~~~~   60 (220)
                      ++++++++++|++++.+.+  +++.++|||+++.. ...+++|++|||.| + |++|++++|
T Consensus       115 ~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         115 LGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             EEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             eehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            5789999999998764444  46678899988764 45689999999997 4 679988766

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.45  E-value=0.001  Score=44.91  Aligned_cols=130  Identities=14%  Similarity=0.144  Sum_probs=82.2

Q ss_pred             EEEEEccchhHHH-HHHHHHHC-CCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027664           45 HVGVVGLGGLGHV-AVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        45 ~vlI~G~g~~G~~-~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~  122 (220)
                      ++.|+|+|.+|.. .+...+.. +.++++++.++++...+.+.++....++  +.+.+.+  ..+|+|+-|++.....+.
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~~~ll~--~~iD~V~I~tp~~~H~~~   78 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCT--DYRDVLQ--YGVDAVMIHAATDVHSTL   78 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCS--STTGGGG--GCCSEEEECSCGGGHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccc--cHHHhcc--cccceecccccccccccc
Confidence            5789999999964 56666655 4588888888888888888888754432  2222211  379999999998877888


Q ss_pred             HHhccccCCEEEEeCCCCCCCCCCchh------h-hcCCeE-EEEEecCCHHHHHHHHHHHHcCCCccc
Q 027664          123 LIGLLKSQGKLVLLGAPEKPLELPAFP------L-LTGRKI-VGGSLIGGLKETQEMIDFAAKHNIRAD  183 (220)
Q Consensus       123 ~~~~l~~~G~~v~~g~~~~~~~~~~~~------~-~~~~~~-~~~~~~~~~~~~~~~~~~i~~g~i~~~  183 (220)
                      +..++..|-. +.+   ..+...+...      + -.++.. +.++ .+....+.++.+.+..|++...
T Consensus        79 ~~~al~~gk~-V~~---EKP~~~~~~e~~~l~~~a~~~~~~~~vg~-~r~~~~~~~~~~~~~~G~ig~~  142 (167)
T d1xeaa1          79 AAFFLHLGIP-TFV---DKPLAASAQECENLYELAEKHHQPLYVGF-NGFDAMVQDWLQVAAAGKLPTH  142 (167)
T ss_dssp             HHHHHHTTCC-EEE---ESCSCSSHHHHHHHHHHHHHTTCCEEEEC-GTHHHHHHHHHHHHHHTCCCHH
T ss_pred             cccccccccc-ccc---CCCCcCCHHHHHHHHHHHHHcCCEEEEEe-CcCCHHHHHHHHHhhcCCCCcE
Confidence            8888887755 444   2233222221      1 122332 3343 3333556777888888887643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00032  Score=52.80  Aligned_cols=99  Identities=19%  Similarity=0.176  Sum_probs=64.0

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcC--------------CC-EEEcCCC-HHH
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLG--------------AD-SFLVSRD-QDE   99 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g--------------~~-~~~~~~~-~~~   99 (220)
                      ..++||++||=.|+|+ |.++..+|+..|.  +|+.++.+++..+.+.+.+.              .+ ..+...+ .+.
T Consensus        94 l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~  172 (324)
T d2b25a1          94 MDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  172 (324)
T ss_dssp             HTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             hCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence            3489999999999875 8889999998875  89999999877655543321              01 1111111 111


Q ss_pred             HHHhc-CCccEEEEcCCCc-ccHHHHHhccccCCEEEEeC
Q 027664          100 MQAAM-GTMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       100 ~~~~~-~~~d~v~d~~g~~-~~~~~~~~~l~~~G~~v~~g  137 (220)
                      ..... ..||.||=-+..+ ..+..+.+.|++||+++.+-
T Consensus       173 ~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         173 TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             C-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             ccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence            11112 2588876434443 46889999999999999874

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.45  E-value=2.2e-05  Score=56.71  Aligned_cols=91  Identities=23%  Similarity=0.308  Sum_probs=58.9

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCC--HH-------HHHHhc--CCccEEE
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD--QD-------EMQAAM--GTMDGII  111 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~-------~~~~~~--~~~d~v~  111 (220)
                      .+|||.|+ +++|.++++.+...|++|+.+++++++...      ....+....  .+       ......  +++|+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~li   76 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD------SNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVF   76 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS------EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhccc------ccceeccccCchhHHHHHHHHHHHHhcCCCeeEEE
Confidence            46899997 999999999988899999999988653211      111111111  11       111211  3699999


Q ss_pred             EcCCCcc--------------------------cHHHHHhccccCCEEEEeCCCC
Q 027664          112 DTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       112 d~~g~~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +++|...                          ..+..+..++++|+++.++...
T Consensus        77 nnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~  131 (235)
T d1ooea_          77 CVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  131 (235)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             ECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHH
Confidence            9988410                          0133456778899999987654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.41  E-value=0.00016  Score=53.40  Aligned_cols=103  Identities=16%  Similarity=0.193  Sum_probs=66.0

Q ss_pred             HhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCC--EEEcCCCHHHHHHhcCCccE
Q 027664           35 RFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        35 ~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~--~~~~~~~~~~~~~~~~~~d~  109 (220)
                      .....++++.+||=+||| .|..+..+++..|++|++++.++...+.+.+   ..|..  .-+...+...+.--.+.||+
T Consensus        60 ~~~~~l~~~~~vLDiGcG-~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~  138 (282)
T d2o57a1          60 AMTGVLQRQAKGLDLGAG-YGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDF  138 (282)
T ss_dssp             HHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEE
T ss_pred             HHhcCCCCCCEEEEeCCC-CcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccch
Confidence            344558899999999997 4777888888889999999999876544432   23331  11222221111101136999


Q ss_pred             EEEcCC-----C-cccHHHHHhccccCCEEEEeCC
Q 027664          110 IIDTVS-----A-VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       110 v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      |+-.-.     + ...+..+.++|++||+++....
T Consensus       139 V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         139 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            874321     1 1246788899999999987654

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.41  E-value=8.6e-05  Score=54.10  Aligned_cols=73  Identities=14%  Similarity=0.025  Sum_probs=49.9

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCCEEEcCCCHH-HHHHh---cCCccEEEEcCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADSFLVSRDQD-EMQAA---MGTMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~-~~~~~---~~~~d~v~d~~g  115 (220)
                      .++||.|+ +++|..+++.+...|++|++.+++.++.+++..   .+..-.+.+..+.+ .+++.   .+++|++++++|
T Consensus         1 ~TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg   80 (252)
T d1zmta1           1 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI   80 (252)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            36899997 899999999888899999999988777666532   22223333444432 22222   358999998766


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        81 ~   81 (252)
T d1zmta1          81 F   81 (252)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=97.40  E-value=0.00096  Score=45.06  Aligned_cols=131  Identities=15%  Similarity=0.207  Sum_probs=74.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC---------CE-------EEc--------CCCHHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---------DS-------FLV--------SRDQDEM  100 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~---------~~-------~~~--------~~~~~~~  100 (220)
                      +|-|.|-|-+|+++.+.+...+.+++.+-......+.++..+..         +.       +++        ..+++.+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~i   81 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPENI   81 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGGC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHHC
Confidence            57889999999999988877788888777643333332222111         10       111        1111222


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCch----hhhcCCeEEEEEecCCHHHHHHHHHHH
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF----PLLTGRKIVGGSLIGGLKETQEMIDFA  175 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i  175 (220)
                      .+..-++|+|+||+|.....+.+..++..+-+-|++..+......-..    .-+.+..++......+...+..+++.+
T Consensus        82 ~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d~~~iV~GVN~~~~~~~~~IIS~aSCTtn~laP~~k~l  160 (169)
T d1dssg1          82 PWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLI  160 (169)
T ss_dssp             CHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSSCBCCTTTSGGGCCTTCCEEECCCTTHHHHHHHHHHH
T ss_pred             CccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccccceeeecccccccCCCCCEEEChhHHHHHHHHHHHHH
Confidence            222228999999999877788888899888666666554332211111    112234455555555544455555444

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.39  E-value=0.0001  Score=52.98  Aligned_cols=102  Identities=16%  Similarity=0.186  Sum_probs=64.9

Q ss_pred             HHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCEE-EcCCCHHHHHHhc-CCc
Q 027664           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSF-LVSRDQDEMQAAM-GTM  107 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~~-~~~~~~~~~~~~~-~~~  107 (220)
                      .+.....+++|++||=+|||. |..+..+++. +.+|+.++.++...+.+.+.   .+.+.+ +...+.+.+ .+. +.|
T Consensus         7 ~l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-~~~~~~f   83 (234)
T d1xxla_           7 LMIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSF   83 (234)
T ss_dssp             HHHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCE
T ss_pred             HHHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhcccccccccccccccccc-ccccccc
Confidence            344455689999999999974 7888888775 68999999998765544332   333211 111111111 112 369


Q ss_pred             cEEEEcCCC------cccHHHHHhccccCCEEEEeC
Q 027664          108 DGIIDTVSA------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       108 d~v~d~~g~------~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      |+|+-+-.-      ...+..+.+.|+++|+++...
T Consensus        84 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          84 DIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            988753321      124678889999999988753

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.35  E-value=2.1e-05  Score=54.24  Aligned_cols=85  Identities=9%  Similarity=0.024  Sum_probs=53.0

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcC---CCHHHHHHhcCCcc
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS---RDQDEMQAAMGTMD  108 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~d  108 (220)
                      .+|.....--+|++|||+|+|+++.+++..+...| +|+++.++.++.+.+...+........   .+...+......+|
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   85 (177)
T d1nvta1           7 MALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVD   85 (177)
T ss_dssp             HHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCC
T ss_pred             HHHHHhCCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhh
Confidence            44544443357899999999999998887766555 999999998887777654431000000   00000111123689


Q ss_pred             EEEEcCCCc
Q 027664          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~v~d~~g~~  117 (220)
                      ++++|++..
T Consensus        86 liIn~tp~g   94 (177)
T d1nvta1          86 IIINATPIG   94 (177)
T ss_dssp             EEEECSCTT
T ss_pred             hhccCCccc
Confidence            999998753

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.0005  Score=47.13  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=33.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ...++|+|+|+|+.|+.++..+...|.+|++....+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            5678999999999999999999999999999998754

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.33  E-value=0.00068  Score=45.09  Aligned_cols=84  Identities=19%  Similarity=0.287  Sum_probs=59.6

Q ss_pred             EEEEEccchhHHHHHH-HHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027664           45 HVGVVGLGGLGHVAVK-FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~-la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  123 (220)
                      +|.++|+|.+|.+.++ ++++-+.++++.++++++.+.+.+++|.... +..+  .    ....|+||=|+-.. .+...
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~-~~~~--~----v~~~Div~lavkP~-~~~~v   73 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETS-ATLP--E----LHSDDVLILAVKPQ-DMEAA   73 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEE-SSCC--C----CCTTSEEEECSCHH-HHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccc-cccc--c----ccccceEEEecCHH-HHHHh
Confidence            5788999999998887 4555346999999999988888777886433 2111  1    13579999888743 46777


Q ss_pred             HhccccCCEEEEe
Q 027664          124 IGLLKSQGKLVLL  136 (220)
Q Consensus       124 ~~~l~~~G~~v~~  136 (220)
                      ++-+++.+.++..
T Consensus        74 ~~~l~~~~~~viS   86 (152)
T d1yqga2          74 CKNIRTNGALVLS   86 (152)
T ss_dssp             HTTCCCTTCEEEE
T ss_pred             HHHHhhcccEEee
Confidence            7777766665543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.30  E-value=0.00046  Score=49.00  Aligned_cols=71  Identities=25%  Similarity=0.203  Sum_probs=50.5

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+|||.|+ |.+|..++..+...|.  .|+...+++++...+  .-+.+.+ .|..+.+...+...++|.|+.+++.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI--GGEADVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc--cCCcEEEEeeeccccccccccccceeeEEEEee
Confidence            58999997 9999999988888775  566667776544332  1233333 3555666677777799999999865

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.29  E-value=0.0017  Score=44.64  Aligned_cols=96  Identities=23%  Similarity=0.216  Sum_probs=62.2

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCC-CEE-EcCCCHHHHHHhcCCccEEEEc
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGA-DSF-LVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~-~~~-~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      .+++|++||=+|+|. |..++.+|+. +.+|+.++.+++..+.+.+   .+|. +.+ +-..+......-...||.|+-.
T Consensus        30 ~~~~g~~VLDiGcGs-G~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~  107 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGT-GGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVG  107 (186)
T ss_dssp             CCCTTCEEEEESCTT-SHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEES
T ss_pred             CCCCCCEEEEEECCe-Eccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEe
Confidence            479999999999863 6666677765 5699999999886655543   3454 222 2223322222222479998854


Q ss_pred             CCCc---ccHHHHHhccccCCEEEEe
Q 027664          114 VSAV---HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       114 ~g~~---~~~~~~~~~l~~~G~~v~~  136 (220)
                      .+..   ..++.+.+.|+++|+++..
T Consensus       108 ~~~~~~~~~~~~~~~~LkpgG~lvi~  133 (186)
T d1l3ia_         108 GSGGELQEILRIIKDKLKPGGRIIVT  133 (186)
T ss_dssp             CCTTCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CccccchHHHHHHHHHhCcCCEEEEE
Confidence            4332   2466778899999998865

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.28  E-value=0.00058  Score=47.54  Aligned_cols=113  Identities=21%  Similarity=0.205  Sum_probs=74.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..++++++.+|++|++.+....... .  ..+.    ...+   +.++....|+++-++.-..   
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~-~--~~~~----~~~~---l~~~l~~sDii~~~~plt~~T~  111 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL-E--KKGY----YVDS---LDDLYKQADVISLHVPDVPANV  111 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-H--HTTC----BCSC---HHHHHHHCSEEEECSCCCGGGT
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCccccccc-c--ccee----eecc---ccccccccccccccCCcccccc
Confidence            578999999999999999999999999999987654221 1  1222    1122   3333445799988776421   


Q ss_pred             -cH-HHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEee
Q 027664          119 -PL-MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIP  188 (220)
Q Consensus       119 -~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~  188 (220)
                       .+ ...++.|+++..++.++-..                        .-+.+.+.+++.+|++..-. ++|+
T Consensus       112 ~li~~~~l~~mk~~a~lIN~sRG~------------------------ivde~aL~~aL~~~~i~~a~lDV~~  160 (197)
T d1j4aa1         112 HMINDESIAKMKQDVVIVNVSRGP------------------------LVDTDAVIRGLDSGKIFGYAMDVYE  160 (197)
T ss_dssp             TCBSHHHHHHSCTTEEEEECSCGG------------------------GBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             ccccHHHHhhhCCccEEEecCchh------------------------hhhhHHHHHHHhcccchheeeeccc
Confidence             12 45678888888888875321                        11245667777777776432 4543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.27  E-value=0.00079  Score=46.70  Aligned_cols=117  Identities=21%  Similarity=0.223  Sum_probs=76.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCC-ccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA-VHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~  119 (220)
                      -.|+++.|+|.|.+|..+++.++.+|++|+..++.......  ...+...   ..+   +.++....|+|.-++.. +++
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~--~~~~~~~---~~~---l~~ll~~sD~i~~~~plt~~T  118 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE--RALGLQR---VST---LQDLLFHSDCVTLHCGLNEHN  118 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH--HHHTCEE---CSS---HHHHHHHCSEEEECCCCCTTC
T ss_pred             eeCceEEEeccccccccceeeeeccccceeeccCcccccch--hhhcccc---ccc---hhhccccCCEEEEeecccccc
Confidence            36789999999999999999999999999999887543222  2334322   122   33333356888776653 221


Q ss_pred             ----HHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeec
Q 027664          120 ----LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPA  189 (220)
Q Consensus       120 ----~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~  189 (220)
                          -...++.|+++..++.++-..                        .-+-+.+++++.+|++..-. ++|.-
T Consensus       119 ~~li~~~~l~~mk~~a~lIN~sRG~------------------------ivde~aL~~aL~~~~i~~a~lDV~~~  169 (193)
T d1mx3a1         119 HHLINDFTVKQMRQGAFLVNTARGG------------------------LVDEKALAQALKEGRIRGAALDVHES  169 (193)
T ss_dssp             TTSBSHHHHTTSCTTEEEEECSCTT------------------------SBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred             hhhhhHHHHhccCCCCeEEecCCce------------------------EEcHHHHHHHHHcCCceEEEEEcCCC
Confidence                135678888888888875422                        01245677778888776432 45443

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.24  E-value=0.00082  Score=49.17  Aligned_cols=76  Identities=14%  Similarity=0.179  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCccc---hHHHHHHcCCCE--EEcCCCHHHHHH-------hcC
Q 027664           41 KPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSK---KSEAVERLGADS--FLVSRDQDEMQA-------AMG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g--~~G~~~~~la~~~g~~vi~~~~~~~~---~~~~~~~~g~~~--~~~~~~~~~~~~-------~~~  105 (220)
                      -+|+++||.|+ |  ++|.++++.+...|++|+++.++++.   ..++.+..+...  ..+..+++.+++       ..+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            46899999996 5  69999999999999999999988642   222323333222  234444433222       234


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      .+|+++.+.|.
T Consensus        83 ~id~lV~nag~   93 (274)
T d2pd4a1          83 SLDFIVHSVAF   93 (274)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCeEEeeccc
Confidence            89999988875

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00074  Score=52.27  Aligned_cols=107  Identities=16%  Similarity=0.136  Sum_probs=68.7

Q ss_pred             hhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHH----------cC----CCEE-Ec
Q 027664           30 VYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVER----------LG----ADSF-LV   93 (220)
Q Consensus        30 a~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~----------~g----~~~~-~~   93 (220)
                      ..+.+.+.. +++|+++|=+|+| +|..+.++|+..|+ ++++++.++...+.+.+.          ++    .... +.
T Consensus       205 i~~Il~~l~-Lkpgd~fLDLGCG-~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         205 LSDVYQQCQ-LKKGDTFMDLGSG-VGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHTT-CCTTCEEEEESCT-TSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCC-CcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            344555555 8999999999998 59999999999997 899999998654443221          11    1111 11


Q ss_pred             CC--CHHHHHHhcCCccEEEE-cCCC-c---ccHHHHHhccccCCEEEEeCC
Q 027664           94 SR--DQDEMQAAMGTMDGIID-TVSA-V---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus        94 ~~--~~~~~~~~~~~~d~v~d-~~g~-~---~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ..  +.+........+|+++- +.-. +   ..+.++.+.|++||+++..-.
T Consensus       283 ~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         283 KSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             echhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence            11  12333343446788763 2211 1   235678889999999998643

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.21  E-value=0.0012  Score=45.29  Aligned_cols=109  Identities=19%  Similarity=0.298  Sum_probs=75.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc-cc-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV-HP-  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~-  119 (220)
                      .|++|.|+|.|.+|..++++++.+|.+|++.++.....       ... ..     +.++++....|+|+-++.-. ++ 
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~-------~~~-~~-----~~l~ell~~sDiv~~~~pl~~~t~  107 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG-------PWR-FT-----NSLEEALREARAAVCALPLNKHTR  107 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS-------SSC-CB-----SCSHHHHTTCSEEEECCCCSTTTT
T ss_pred             cCceEEEeccccccccceeeeecccccccccccccccc-------cee-ee-----echhhhhhccchhhcccccccccc
Confidence            58899999999999999999999999999998775321       111 11     12345556789998877542 21 


Q ss_pred             ---HHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEe
Q 027664          120 ---LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVI  187 (220)
Q Consensus       120 ---~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~  187 (220)
                         =...++.|+++..++.++-..                        .-+.+.+++++.++++.--. ++|
T Consensus       108 ~li~~~~l~~mk~~ailIN~~RG~------------------------ivd~~aL~~aL~~~~i~~aalDV~  155 (181)
T d1qp8a1         108 GLVKYQHLALMAEDAVFVNVGRAE------------------------VLDRDGVLRILKERPQFIFASDVW  155 (181)
T ss_dssp             TCBCHHHHTTSCTTCEEEECSCGG------------------------GBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             cccccceeeeccccceEEeccccc------------------------cccchhhhhhcccCcEEEEEEecC
Confidence               156788999999999886311                        01345677778888776433 444

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00022  Score=51.07  Aligned_cols=76  Identities=20%  Similarity=0.153  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      ..+++|||.|+ |.+|..+++.+...|.  +|+++++++.....- +.-..+.. .|..+.+.+.+...++|+++.|+|.
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~-~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE-AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG-GGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc-ccceeeeeeecccccccccccccccccccccccc
Confidence            45679999998 9999999987776674  899999876543221 11122222 3444444455555689999999986


Q ss_pred             c
Q 027664          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      .
T Consensus        91 ~   91 (232)
T d2bkaa1          91 T   91 (232)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.19  E-value=0.0038  Score=42.24  Aligned_cols=96  Identities=17%  Similarity=0.198  Sum_probs=63.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCC-CeEEEEeCCc-cchHHHHHHcCCCEEEcCCC-HH-----------HHHHhcCCccEE
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSP-SKKSEAVERLGADSFLVSRD-QD-----------EMQAAMGTMDGI  110 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~-~~~~~~~~~~g~~~~~~~~~-~~-----------~~~~~~~~~d~v  110 (220)
                      +|.|.|-|-+|..+++.+.... .+++.+.... ......+..++.+......+ ..           .+.+...++|+|
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDvV   83 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII   83 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCEE
Confidence            6889999999999998776654 4777666432 22233334556554332221 11           122223489999


Q ss_pred             EEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          111 IDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +||+|.....+.+-.++..|-+.|..+...
T Consensus        84 iEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~  113 (172)
T d2czca2          84 VDATPGGIGAKNKPLYEKAGVKAIFQGGEK  113 (172)
T ss_dssp             EECCSTTHHHHHHHHHHHHTCEEEECTTSC
T ss_pred             EECCCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            999998766777888899998988887654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.00025  Score=50.89  Aligned_cols=93  Identities=16%  Similarity=0.223  Sum_probs=63.3

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCC----
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVS----  115 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g----  115 (220)
                      ++++.+||=+||| .|..+..+++ .|++|++++.+++..+.+. +-+....+.....+ +.-..+.||+|+-...    
T Consensus        40 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~giD~s~~~l~~a~-~~~~~~~~~~~~~~-l~~~~~~fD~ii~~~~~~~~  115 (246)
T d2avna1          40 LKNPCRVLDLGGG-TGKWSLFLQE-RGFEVVLVDPSKEMLEVAR-EKGVKNVVEAKAED-LPFPSGAFEAVLALGDVLSY  115 (246)
T ss_dssp             CCSCCEEEEETCT-TCHHHHHHHT-TTCEEEEEESCHHHHHHHH-HHTCSCEEECCTTS-CCSCTTCEEEEEECSSHHHH
T ss_pred             cCCCCEEEEECCC-Cchhcccccc-cceEEEEeecccccccccc-cccccccccccccc-cccccccccceeeecchhhh
Confidence            4678899999998 5888888876 4899999999998777664 44444444332222 2111247999885432    


Q ss_pred             --C-cccHHHHHhccccCCEEEEe
Q 027664          116 --A-VHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       116 --~-~~~~~~~~~~l~~~G~~v~~  136 (220)
                        + ...+..+.+.|++||.++..
T Consensus       116 ~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         116 VENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhHHHHHHHHHhhcCcCcEEEEE
Confidence              1 12356788899999998864

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00055  Score=48.87  Aligned_cols=95  Identities=21%  Similarity=0.155  Sum_probs=62.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC---CCEEEcCCCHHHH-HHhc-CCccEE-EEcC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---ADSFLVSRDQDEM-QAAM-GTMDGI-IDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~-~~~~-~~~d~v-~d~~  114 (220)
                      .+|.+||-+|+| .|..+..+++..+.++++++.++...+.+.+...   ....+...+.... ..+. +.||.+ ||++
T Consensus        52 ~~g~~VLdIGcG-~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFG-MAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCT-TSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeecc-chHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            688999999997 4788888888766799999999877666644432   2111112222222 2222 368887 5765


Q ss_pred             CCcc----------cHHHHHhccccCCEEEEe
Q 027664          115 SAVH----------PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       115 g~~~----------~~~~~~~~l~~~G~~v~~  136 (220)
                      ....          .+..+.+.|++||+++..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            4421          245577899999999864

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.17  E-value=0.00032  Score=49.60  Aligned_cols=94  Identities=21%  Similarity=0.221  Sum_probs=59.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC-EEEcCCCHHHHHHhcCCccEEEEcCC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD-SFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~-~~~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      ++++.+||-+|||. |..+..+++. |.+|++++.+++..+.+++.   .+.. ..+.. +...+....+.||+|+-.-.
T Consensus        35 l~~~~~ILDiGcG~-G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~-d~~~l~~~~~~fD~I~~~~~  111 (226)
T d1ve3a1          35 MKKRGKVLDLACGV-GGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESNVEFIVG-DARKLSFEDKTFDYVIFIDS  111 (226)
T ss_dssp             CCSCCEEEEETCTT-SHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEEC-CTTSCCSCTTCEEEEEEESC
T ss_pred             cCCCCEEEEECCCc-chhhhhHhhh-hcccccccccccchhhhhhhhcccccccccccc-ccccccccCcCceEEEEecc
Confidence            57889999999974 8888888864 88999999998766555432   2321 11211 11111111237998874322


Q ss_pred             C-----c---ccHHHHHhccccCCEEEEe
Q 027664          116 A-----V---HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       116 ~-----~---~~~~~~~~~l~~~G~~v~~  136 (220)
                      -     .   ..+..+.+.|++||+++..
T Consensus       112 l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         112 IVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             GGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            1     1   1366788999999998764

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.0036  Score=41.89  Aligned_cols=96  Identities=17%  Similarity=0.140  Sum_probs=71.3

Q ss_pred             ccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHH
Q 027664           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   99 (220)
                      ..+||+.......++..+---.|++++|+|- ..+|.-+..++...|++|+++..........                 
T Consensus        15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~-----------------   77 (166)
T d1b0aa1          15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHH-----------------   77 (166)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHH-----------------
T ss_pred             CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHH-----------------
Confidence            4677777777777777664467999999996 6799999999999999998776554322222                 


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                          ....|+++-++|.+..+.  -+.++++-.++.+|..
T Consensus        78 ----~~~ADivI~a~G~p~~i~--~~~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          78 ----VENADLLIVAVGKPGFIP--GDWIKEGAIVIDVGIN  111 (166)
T ss_dssp             ----HHHCSEEEECSCCTTCBC--TTTSCTTCEEEECCCE
T ss_pred             ----HhhhhHhhhhccCccccc--ccccCCCcEEEecCce
Confidence                234689999999875443  3567888888888764

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.14  E-value=0.0031  Score=42.98  Aligned_cols=96  Identities=16%  Similarity=0.188  Sum_probs=60.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccc-hHHHHHHcCCCEEEcCCCHHH-----------HHHhcCCccEEE
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSK-KSEAVERLGADSFLVSRDQDE-----------MQAAMGTMDGII  111 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~d~v~  111 (220)
                      +|-|.|.|-+|..+++.+.... .+++.+...... ........+............           +.+...++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            5789999999999999888765 488887665432 222222333332222211111           122223689999


Q ss_pred             EcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       112 d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      ||+|.....+.+-.++..+-+.+..+...
T Consensus        83 ecTG~f~~~e~a~~hl~~G~KvIi~~~~~  111 (178)
T d1b7go1          83 DTTPNGVGAQYKPIYLQLQRNAIFQGGEK  111 (178)
T ss_dssp             ECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             ECCCCcCCHHHHHHHHHcCCEEEEECCCC
Confidence            99998655666777777777777765543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.11  E-value=0.00027  Score=50.33  Aligned_cols=98  Identities=22%  Similarity=0.169  Sum_probs=62.6

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCCEE-EcCCCHHHHHHhcCCccEEEEc
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADSF-LVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      ..++++++||-+||| .|..+..+++. |.+|++++.+++..+.+.+   ..+.+.+ +...+...+.-..+.||+|+-.
T Consensus        11 ~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~   88 (231)
T d1vl5a_          11 AALKGNEEVLDVATG-GGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCR   88 (231)
T ss_dssp             HTCCSCCEEEEETCT-TCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEE
T ss_pred             cCCCCcCEEEEeccc-CcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccc
Confidence            448999999999997 57777777755 7899999999876554432   3343221 1111111111012369999744


Q ss_pred             CC-----Cc-ccHHHHHhccccCCEEEEeC
Q 027664          114 VS-----AV-HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       114 ~g-----~~-~~~~~~~~~l~~~G~~v~~g  137 (220)
                      -.     ++ ..+..+.+.|++||+++...
T Consensus        89 ~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          89 IAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            22     22 24678999999999999764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.09  E-value=0.0027  Score=42.80  Aligned_cols=90  Identities=21%  Similarity=0.156  Sum_probs=59.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcCC-CEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      +|+|+|+|.+|...+..++..|.  +|++.+++++..+.+ ++.+. +......+.    ......|+++-|+....   
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a-~~~~~~~~~~~~~~~----~~~~~~dlIila~p~~~~~~   77 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGTTSIAK----VEDFSPDFVMLSSPVRTFRE   77 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEESCGGG----GGGTCCSEEEECSCHHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH-HHhhcchhhhhhhhh----hhccccccccccCCchhhhh
Confidence            68999999999999998888875  899999998777666 45564 444322111    11125788888877542   


Q ss_pred             cHHHHHhccccCCEEEEeCCC
Q 027664          119 PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       119 ~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      .+......+.++..++.++..
T Consensus        78 vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          78 IAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHHHHSCTTCEEEECCSC
T ss_pred             hhhhhhccccccccccccccc
Confidence            233444556666666666543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.08  E-value=0.00033  Score=53.08  Aligned_cols=78  Identities=21%  Similarity=0.148  Sum_probs=53.2

Q ss_pred             CCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---C-C--CEEE--cCCCHHHHHHhcCCccE
Q 027664           39 LDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G-A--DSFL--VSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        39 ~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g-~--~~~~--~~~~~~~~~~~~~~~d~  109 (220)
                      .+++|++|||.|+ |-+|..+++.+...|.+|++++++.++...+.+..   . .  ...+  |..+...+.+...++|+
T Consensus         7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1           7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence            3688999999997 89999999888888999999998876544432211   1 1  1112  22333334444558999


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      ++.+.+.
T Consensus        87 v~~~a~~   93 (342)
T d1y1pa1          87 VAHIASV   93 (342)
T ss_dssp             EEECCCC
T ss_pred             hhhhccc
Confidence            9988765

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00086  Score=49.52  Aligned_cols=72  Identities=19%  Similarity=0.139  Sum_probs=44.8

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEE---eCCccc---hHHHHHHcC---CC---EEEcCCCHHHHHHhc-----CC
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVI---STSPSK---KSEAVERLG---AD---SFLVSRDQDEMQAAM-----GT  106 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~---~~~~~~---~~~~~~~~g---~~---~~~~~~~~~~~~~~~-----~~  106 (220)
                      .|||.|+ +++|.++++.+...|++++.+   .++.+.   ..+..+.+.   ..   ...|..+.+.+.++.     +.
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g~   83 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEGR   83 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTSC
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccccc
Confidence            4567787 899999998888888865444   443332   233333332   22   224666665554432     37


Q ss_pred             ccEEEEcCCC
Q 027664          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~v~d~~g~  116 (220)
                      .|+++++.|.
T Consensus        84 idilvnnag~   93 (285)
T d1jtva_          84 VDVLVCNAGL   93 (285)
T ss_dssp             CSEEEECCCC
T ss_pred             hhhhhhcccc
Confidence            9999998876

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=97.08  E-value=0.0012  Score=47.95  Aligned_cols=77  Identities=16%  Similarity=0.276  Sum_probs=52.6

Q ss_pred             CCCCCEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCccch-HHHHHHcCC---CEEEcCCCHHH-------HHHhc-
Q 027664           40 DKPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSKK-SEAVERLGA---DSFLVSRDQDE-------MQAAM-  104 (220)
Q Consensus        40 ~~~~~~vlI~G~-g--~~G~~~~~la~~~g~~vi~~~~~~~~~-~~~~~~~g~---~~~~~~~~~~~-------~~~~~-  104 (220)
                      +-.|+++||.|+ |  ++|.++++-+...|++|+.+.++.++. +...+.++.   ....|..+++.       +.+.. 
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~   82 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   82 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence            457899999994 4  599999998889999999999887765 334445553   22234444322       22211 


Q ss_pred             --CCccEEEEcCCC
Q 027664          105 --GTMDGIIDTVSA  116 (220)
Q Consensus       105 --~~~d~v~d~~g~  116 (220)
                        +..|++++++|.
T Consensus        83 ~~~~ld~~i~~ag~   96 (268)
T d2h7ma1          83 AGNKLDGVVHSIGF   96 (268)
T ss_dssp             TTCCEEEEEECCCC
T ss_pred             cCCCcceeeecccc
Confidence              368999999874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.08  E-value=0.00066  Score=47.78  Aligned_cols=98  Identities=13%  Similarity=0.099  Sum_probs=63.1

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHH---cCC-CEEE-cCCCHHHHHHhcCCccEEEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVER---LGA-DSFL-VSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~---~g~-~~~~-~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .++||++||=+|||+ |..+..+++..+. +|++++-++...+.+.+.   .+- ..++ +.............+|+++.
T Consensus        53 ~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~  131 (209)
T d1nt2a_          53 KLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ  131 (209)
T ss_dssp             CCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEe
Confidence            479999999999974 7778888887764 899999998766555332   232 2221 11112222222236777776


Q ss_pred             cCCCcc----cHHHHHhccccCCEEEEeC
Q 027664          113 TVSAVH----PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g~~~----~~~~~~~~l~~~G~~v~~g  137 (220)
                      ......    .+..+.+.|++||+++...
T Consensus       132 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         132 DIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            554322    3566778999999998763

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.08  E-value=0.0028  Score=43.61  Aligned_cols=117  Identities=14%  Similarity=0.097  Sum_probs=77.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      .+.++.|+|.|.+|..+++.++.+|.+|+..++........ +..+...   ..+   +.++....|+|.-++.-.+   
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-~~~~~~~---~~~---l~~~l~~sD~v~~~~plt~~T~  115 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE-KELNLTW---HAT---REDMYPVCDVVTLNCPLHPETE  115 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH-HHHTCEE---CSS---HHHHGGGCSEEEECSCCCTTTT
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeecccccccc-ccccccc---cCC---HHHHHHhccchhhcccccccch
Confidence            57899999999999999999999999999999875433332 3444321   112   3344456888877665321   


Q ss_pred             -c-HHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeec
Q 027664          119 -P-LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPA  189 (220)
Q Consensus       119 -~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~  189 (220)
                       . -...++.|+++..+|.++-..                        .-+.+.+++++++|++.--. ++|.-
T Consensus       116 ~li~~~~l~~mk~ga~lIN~aRG~------------------------ivd~~aL~~aL~~g~i~ga~lDV~~~  165 (188)
T d2naca1         116 HMINDETLKLFKRGAYIVNTARGK------------------------LCDRDAVARALESGRLAGYAGDVWFP  165 (188)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSCGG------------------------GBCHHHHHHHHHTTSEEEEEESCCSS
T ss_pred             hhhHHHHHHhCCCCCEEEecCchh------------------------hhhHHHHHHHHhCCCceeEEEeCCCC
Confidence             1 246778888888888875321                        11245667777888776432 55443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00034  Score=40.78  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=31.8

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~   78 (220)
                      ++|.|+|+|.+|.|.++-++.+|.++++.+..++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            47899999999999999999999999999987653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.03  E-value=0.0013  Score=49.73  Aligned_cols=76  Identities=21%  Similarity=0.186  Sum_probs=54.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc----CCCEE-EcCCCHHHHHHhcC--CccEEEEc
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADSF-LVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~----g~~~~-~~~~~~~~~~~~~~--~~d~v~d~  113 (220)
                      +|++|||.|+ |-+|..+++.+...|.+|+++++.......+.+..    +.+.+ .|-.+.+.+.+...  .+|+++.+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~   86 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   86 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhhh
Confidence            4799999997 99999999999999999999998876433332222    23332 24445555555543  78999998


Q ss_pred             CCCc
Q 027664          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      ++..
T Consensus        87 aa~~   90 (356)
T d1rkxa_          87 AAQP   90 (356)
T ss_dssp             CSCC
T ss_pred             hccc
Confidence            8763

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=97.02  E-value=0.0061  Score=40.99  Aligned_cols=96  Identities=18%  Similarity=0.249  Sum_probs=57.9

Q ss_pred             EEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCC---------CE-------EEcC--------CCHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGA---------DS-------FLVS--------RDQDE   99 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~---------~~-------~~~~--------~~~~~   99 (220)
                      +|.|.|-|-+|.++.+.+... ..+++.+-......+.++.-+..         +.       +++.        .+++.
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~~   82 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSK   82 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCChhh
Confidence            578999999999999876654 46888776643233322221111         11       1111        11122


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +.+..-++|+|+||+|.-...+.+..++..|-+-|++..+.
T Consensus        83 i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~  123 (169)
T d1u8fo1          83 IKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS  123 (169)
T ss_dssp             CCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC
T ss_pred             CCccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccc
Confidence            21112289999999998766778888888886666665443

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.02  E-value=0.0024  Score=44.10  Aligned_cols=118  Identities=12%  Similarity=0.183  Sum_probs=77.4

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCC-ccc-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA-VHP-  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~-  119 (220)
                      .|+++.|+|.|.+|..++++++.+|.+++..+......... ...+..   ...+   +.++....|+|.-++.- +++ 
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-~~~~~~---~~~~---l~~ll~~sD~v~l~~plt~~T~  118 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDE-ASYQAT---FHDS---LDSLLSVSQFFSLNAPSTPETR  118 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-HHHTCE---ECSS---HHHHHHHCSEEEECCCCCTTTT
T ss_pred             cccceEEeecccchHHHHHHHHhhccccccccccccccchh-hccccc---ccCC---HHHHHhhCCeEEecCCCCchHh
Confidence            47999999999999999999999999999998775543333 222221   1122   33333456888776643 221 


Q ss_pred             --H-HHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecc
Q 027664          120 --L-MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPAD  190 (220)
Q Consensus       120 --~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~  190 (220)
                        + ...++.|+++..+|.++-..                        .-+-+.+++++.+|++.--. ++|.-|
T Consensus       119 ~li~~~~l~~mk~~a~lIN~sRG~------------------------ivde~aL~~aL~~g~i~~a~lDV~~~E  169 (191)
T d1gdha1         119 YFFNKATIKSLPQGAIVVNTARGD------------------------LVDNELVVAALEAGRLAYAGFDVFAGE  169 (191)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSCGG------------------------GBCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred             heecHHHhhCcCCccEEEecCCcc------------------------chhhHHHHHHHHcCCceEEEEECCCCC
Confidence              2 46788899999888875321                        11345677788888876443 555443

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0068  Score=40.77  Aligned_cols=97  Identities=14%  Similarity=0.104  Sum_probs=73.2

Q ss_pred             cccccchhhhhhhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHH
Q 027664           20 TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD   98 (220)
Q Consensus        20 aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~   98 (220)
                      -+.+||+....+..+++.+---.|++++|+|. ..+|.-++.++...|++|+.+........+.                
T Consensus        16 ~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~----------------   79 (170)
T d1a4ia1          16 DCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEE----------------   79 (170)
T ss_dssp             SCCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHH----------------
T ss_pred             CCCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHH----------------
Confidence            35678888888888887764458999999997 6899999999999999999877665433222                


Q ss_pred             HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664           99 EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus        99 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                           ....|+++-++|.+..+.  -+.++++-.++.+|..
T Consensus        80 -----~~~aDivi~a~G~~~~i~--~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          80 -----VNKGDILVVATGQPEMVK--GEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             -----HTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCB
T ss_pred             -----Hhhccchhhccccccccc--cccccCCCeEeccCcc
Confidence                 235688888888875433  3567888888888764

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=97.01  E-value=0.0077  Score=40.64  Aligned_cols=96  Identities=16%  Similarity=0.164  Sum_probs=61.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCC-CeEEEEeCCcc-chHHHHHHcCCCEEEcCCCHH-H-----------HHHhcCCccEE
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPS-KKSEAVERLGADSFLVSRDQD-E-----------MQAAMGTMDGI  110 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~-----------~~~~~~~~d~v  110 (220)
                      +|-|.|-|-+|..+.+.+...+ .+++.+..... ........++.+......+.. .           ..++..++|+|
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDvV   82 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV   82 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCEE
Confidence            5789999999999999887665 47776665432 222232345555433222211 1           12222389999


Q ss_pred             EEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          111 IDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 ~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +||+|.-...+.+-..+..|-+.+..+...
T Consensus        83 iEcTG~f~~~~~~~~hl~~G~K~vi~~~~~  112 (171)
T d1cf2o1          83 IDCTPEGIGAKNLKMYKEKGIKAIFQGGEK  112 (171)
T ss_dssp             EECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             EEccCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            999998755667777888888888776543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.00  E-value=0.0019  Score=43.25  Aligned_cols=87  Identities=22%  Similarity=0.285  Sum_probs=59.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHH-
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL-  123 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~-  123 (220)
                      +|-|+|.|.+|...++-+...|.+|++.++++++.+.+. +.+....   ..   ..+.....|++|-|+.++...+.. 
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~-~~~~~~~---~~---~~e~~~~~d~ii~~v~~~~~v~~v~   74 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGAETA---ST---AKAIAEQCDVIITMLPNSPHVKEVA   74 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEEC---SS---HHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHH-Hhhhhhc---cc---HHHHHhCCCeEEEEcCCHHHHHHHH
Confidence            477899999999999888788999999999988877774 5555321   12   122233578999998876444433 


Q ss_pred             ------HhccccCCEEEEeCC
Q 027664          124 ------IGLLKSQGKLVLLGA  138 (220)
Q Consensus       124 ------~~~l~~~G~~v~~g~  138 (220)
                            ...+.++..++..+.
T Consensus        75 ~~~~~~~~~~~~g~iiid~sT   95 (161)
T d1vpda2          75 LGENGIIEGAKPGTVLIDMSS   95 (161)
T ss_dssp             HSTTCHHHHCCTTCEEEECSC
T ss_pred             hCCcchhhccCCCCEEEECCC
Confidence                  344556666666644

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.00  E-value=0.0021  Score=44.11  Aligned_cols=115  Identities=22%  Similarity=0.266  Sum_probs=76.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCC-ccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA-VHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~-~~~  119 (220)
                      -.|.++.|+|.|.+|..++++++.+|.+|++.++...... . ...+...    .+   ++++....|+|.-+++- +++
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~-~-~~~~~~~----~~---l~ell~~sDiv~~~~Plt~~T  112 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR-A-AQLGIEL----LS---LDDLLARADFISVHLPKTPET  112 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHH-H-HHHTCEE----CC---HHHHHHHCSEEEECCCCSTTT
T ss_pred             ccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhH-H-hhcCcee----cc---HHHHHhhCCEEEEcCCCCchh
Confidence            3678999999999999999999999999999988764322 2 2344321    12   33344457898877653 221


Q ss_pred             ---H-HHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccc-eEEee
Q 027664          120 ---L-MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRAD-IEVIP  188 (220)
Q Consensus       120 ---~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~-~~~~~  188 (220)
                         + ...++.|+++..++.++-..                        .-+-+.+.+++.+|++.-- .++|.
T Consensus       113 ~~lin~~~l~~mk~~a~lIN~sRG~------------------------iVde~aL~~aL~~~~i~~a~lDV~~  162 (184)
T d1ygya1         113 AGLIDKEALAKTKPGVIIVNAARGG------------------------LVDEAALADAITGGHVRAAGLDVFA  162 (184)
T ss_dssp             TTCBCHHHHTTSCTTEEEEECSCTT------------------------SBCHHHHHHHHHTSSEEEEEESSCS
T ss_pred             hhhhhHHHHhhhCCCceEEEecchh------------------------hhhhHHHHHHHhcCcEeEEEEeCCC
Confidence               2 46778899998888876422                        0124566777788887644 24543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.99  E-value=0.0018  Score=46.11  Aligned_cols=98  Identities=16%  Similarity=0.112  Sum_probs=62.1

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccchHHHHHHcC---C-CEEE-cCCCHHHHHHhcCCccEEEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLG---A-DSFL-VSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~~~g---~-~~~~-~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .++||++||=+|||. |..+..+++... .+|++++.++...+.+.+...   . ..+. +.............+|+++.
T Consensus        71 ~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~  149 (230)
T d1g8sa_          71 PIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYE  149 (230)
T ss_dssp             CCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeec
Confidence            379999999999974 888888888753 499999999876666644322   1 2221 11222222222225666666


Q ss_pred             cCCCcc----cHHHHHhccccCCEEEEeC
Q 027664          113 TVSAVH----PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g~~~----~~~~~~~~l~~~G~~v~~g  137 (220)
                      ......    .+..+...|+++|++++.-
T Consensus       150 ~~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         150 DVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            554322    2556778899999988763

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00019  Score=48.43  Aligned_cols=88  Identities=19%  Similarity=0.232  Sum_probs=55.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCC--C---EEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--D---SFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~--~---~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      +|+|+|+|.+|.+.+..+...|.+|..+++.+++.... ...+.  .   ..+.....    ...+.+|++|-|+.....
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~D~iii~vka~~~   76 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-NLVETDGSIFNESLTANDP----DFLATSDLLLVTLKAWQV   76 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-EEECTTSCEEEEEEEESCH----HHHHTCSEEEECSCGGGH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh-ccccCCccccccccccchh----hhhcccceEEEeecccch
Confidence            68999999999999888888899999999987654322 11121  1   11111111    122379999999987632


Q ss_pred             ---HHHHHhccccCCEEEEeC
Q 027664          120 ---LMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       120 ---~~~~~~~l~~~G~~v~~g  137 (220)
                         ++.+...+.++..++.+.
T Consensus        77 ~~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          77 SDAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             HHHHHHHHTTSCTTSCEEEEC
T ss_pred             HHHHHhhccccCcccEEeecc
Confidence               233344555566676664

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.98  E-value=0.0019  Score=46.73  Aligned_cols=77  Identities=23%  Similarity=0.349  Sum_probs=52.4

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCcc---chHHHH---HHcCCCEE---EcCCCHHHHHHhc----
Q 027664           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPS---KKSEAV---ERLGADSF---LVSRDQDEMQAAM----  104 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~la~~~g~-~vi~~~~~~~---~~~~~~---~~~g~~~~---~~~~~~~~~~~~~----  104 (220)
                      ++|+.++||.|+ |++|+.+++.+...|+ +|+.+.++..   ..+++.   +..|....   .|..+.+.++++.    
T Consensus         6 ~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~   85 (259)
T d2fr1a1           6 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIG   85 (259)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             cCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccc
Confidence            688999999997 9999999988877898 6777776532   222222   33554322   3556665555442    


Q ss_pred             C--CccEEEEcCCC
Q 027664          105 G--TMDGIIDTVSA  116 (220)
Q Consensus       105 ~--~~d~v~d~~g~  116 (220)
                      +  ..|.++.+.|.
T Consensus        86 ~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          86 DDVPLSAVFHAAAT   99 (259)
T ss_dssp             TTSCEEEEEECCCC
T ss_pred             cccccccccccccc
Confidence            2  68899998886

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.0012  Score=43.69  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=31.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      -.|++|||+|+|.+|..-+..+...|++|++++..
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999999999999999999999988643

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.97  E-value=0.00091  Score=50.89  Aligned_cols=75  Identities=11%  Similarity=0.138  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-CC-EEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-AD-SFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-~~-~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      .++.+|||.|+ |-+|..++..+...|.+|+++++.......  .... .. ...|..+.+.+.+...++|.|+.+++..
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~~   90 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT--EDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADM   90 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC--GGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh--hhcccCcEEEeechhHHHHHHHhhcCCeEeeccccc
Confidence            35788999997 999999999999899999999765443211  1122 21 2234455555666667999999988653

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.96  E-value=0.008  Score=39.56  Aligned_cols=93  Identities=15%  Similarity=0.268  Sum_probs=64.3

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHC--CCeEEEEeCCc--cchHHHHHHcCCCEEEcCCCH--HHH----------------
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAM--GVKVTVISTSP--SKKSEAVERLGADSFLVSRDQ--DEM----------------  100 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~--g~~vi~~~~~~--~~~~~~~~~~g~~~~~~~~~~--~~~----------------  100 (220)
                      ++|.|.|+ |.+|..+.++.+..  ..+|+......  +.+.+..+++....++-..+.  +.+                
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~~   82 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGAD   82 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCcc
Confidence            68999998 99999999999875  34777665443  345555677887776533321  111                


Q ss_pred             --HHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664          101 --QAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       101 --~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                        .+.. ..+|+++.++.+-..+...+.+++.+-++.+.
T Consensus        83 ~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA  121 (150)
T d1r0ka2          83 ALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA  121 (150)
T ss_dssp             HHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred             chheecccccceeeeecCchhHHHHHHHHHhcCCEEEEe
Confidence              1111 26899999987766788888888888776664

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.93  E-value=0.0019  Score=44.99  Aligned_cols=109  Identities=19%  Similarity=0.175  Sum_probs=68.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      -.|.+|.|.|.|.+|..+++.+...|++|++.+.+.++.... ..+|.+.+ ...   .  -+.-..|+.+-|..+...-
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~-~~~g~~~~-~~~---~--~~~~~~DI~iPcA~~~~I~   97 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA-VALGHTAV-ALE---D--VLSTPCDVFAPCAMGGVIT   97 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEEC-CGG---G--GGGCCCSEEEECSCSCCBC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH-Hhhccccc-Ccc---c--cccccceeeeccccccccc
Confidence            378999999999999999999999999999999887766655 45666433 211   1  1223789888887665444


Q ss_pred             HHHHhccccCCEEEEeCCCCCCCCCC-ch-hhhcCCeEEEE
Q 027664          121 MPLIGLLKSQGKLVLLGAPEKPLELP-AF-PLLTGRKIVGG  159 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~~~~~~~-~~-~~~~~~~~~~~  159 (220)
                      ....+.++  .+++ ++....+.+.+ .. .+..+++.+..
T Consensus        98 ~~~a~~i~--ak~i-~e~AN~p~~~~~~~~~L~~rgI~~iP  135 (201)
T d1c1da1          98 TEVARTLD--CSVV-AGAANNVIADEAASDILHARGILYAP  135 (201)
T ss_dssp             HHHHHHCC--CSEE-CCSCTTCBCSHHHHHHHHHTTCEECC
T ss_pred             HHHHhhhh--hhee-eccCCCCcchhhHHHHhcccceEEEe
Confidence            44455443  3443 33333333332 12 24556665544

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.91  E-value=0.00092  Score=48.24  Aligned_cols=73  Identities=12%  Similarity=0.104  Sum_probs=48.3

Q ss_pred             CEEEEEcc-chhHHHHHHHH-H--HCCCeEEEEeCCccchHHHHH---HcC-CC-EEEcCCCHHHHH-------Hhc--C
Q 027664           44 MHVGVVGL-GGLGHVAVKFA-K--AMGVKVTVISTSPSKKSEAVE---RLG-AD-SFLVSRDQDEMQ-------AAM--G  105 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la-~--~~g~~vi~~~~~~~~~~~~~~---~~g-~~-~~~~~~~~~~~~-------~~~--~  105 (220)
                      ++|||.|+ +++|.++++.+ +  ..|++|+++++++++.+++.+   ..+ +. ...|..+++.++       +..  +
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            57999997 89999988654 3  368899999999887665532   222 11 223555543322       222  3


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ++|++++++|.
T Consensus        83 ~iDiLvnNAg~   93 (248)
T d1snya_          83 GLNVLFNNAGI   93 (248)
T ss_dssp             CCSEEEECCCC
T ss_pred             CcceEEeeccc
Confidence            79999998874

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=96.89  E-value=0.0029  Score=42.63  Aligned_cols=94  Identities=22%  Similarity=0.328  Sum_probs=60.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCE------------------------EEcCCCHHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS------------------------FLVSRDQDEM  100 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~------------------------~~~~~~~~~~  100 (220)
                      +|.|.|-|-+|..+.+.+...+.+++.+-... ..+.+...+..|.                        +....+++.+
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~~-~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~i   80 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALINDLT-DNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI   80 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSS-CHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGC
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEECCCc-chhhhhheeecccccCccccccccccceeEecceeEEEEecCChHHC
Confidence            57899999999999998888888888877764 3333322221111                        0111112222


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      .+...++|+|+||+|.-...+.+..++..+-+-|.+..+
T Consensus        81 ~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP  119 (168)
T d2g82a1          81 PWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAP  119 (168)
T ss_dssp             CTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             cccccCCceeEeccccccchHHhhhhhccccceeeeccc
Confidence            222238999999999876777888888877555555443

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.89  E-value=0.0026  Score=45.58  Aligned_cols=93  Identities=16%  Similarity=0.141  Sum_probs=60.5

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCEEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      ..++++||-+|||. |..+..+++ .|++|++++.+++-.+.+.+.   .+...-+...+...+ .+.+.||+|+-+.+.
T Consensus        39 ~~~~~~iLDiGcGt-G~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l-~~~~~fD~I~~~~~~  115 (251)
T d1wzna1          39 KREVRRVLDLACGT-GIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI-AFKNEFDAVTMFFST  115 (251)
T ss_dssp             SSCCCEEEEETCTT-CHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC-CCCSCEEEEEECSSG
T ss_pred             CCCCCEEEEeCCCC-Cccchhhcc-cceEEEEEeeccccccccccccccccccchheehhhhhc-ccccccchHhhhhhh
Confidence            46778999999985 888877776 588999999998766555433   232211212222111 122479998865332


Q ss_pred             c---------ccHHHHHhccccCCEEEE
Q 027664          117 V---------HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus       117 ~---------~~~~~~~~~l~~~G~~v~  135 (220)
                      -         ..++.+.++|++||.++.
T Consensus       116 ~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         116 IMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            1         236678899999999876

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.87  E-value=0.0029  Score=46.51  Aligned_cols=74  Identities=20%  Similarity=0.253  Sum_probs=52.6

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccch-----H--HHHHHcCCCEE-EcCCCHHHHHHhcCCccEEEEc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK-----S--EAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~-----~--~~~~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      -++|||.|+ |-+|..++..+...|.+|++++++....     .  ...+..+++.+ .|..+.+.+.+...+.+.++.+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            356999997 9999999998888999999998865421     1  11123345444 2455666777777788999988


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      .+.
T Consensus        83 ~~~   85 (312)
T d1qyda_          83 LAG   85 (312)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            765

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.85  E-value=0.006  Score=40.60  Aligned_cols=93  Identities=16%  Similarity=0.257  Sum_probs=57.2

Q ss_pred             CEEEEEccchhHH-HHHHHHHHCCC-eEEEEeCCc-c-chHHHHHHcCCCEEEcCCCHHHHHHhc--CCccEEEEcCCCc
Q 027664           44 MHVGVVGLGGLGH-VAVKFAKAMGV-KVTVISTSP-S-KKSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~g~~G~-~~~~la~~~g~-~vi~~~~~~-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~d~v~d~~g~~  117 (220)
                      =++-|+|+|.+|. ..+++++.... +++.++... + +.....+++|....  +...+.+.+..  .++|+||+|++..
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~--~~~~d~l~~~~~~~~iDiVf~ATpag   82 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT--YAGVEGLIKLPEFADIDFVFDATSAS   82 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE--SSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCccc--ccceeeeeecccccccCEEEEcCCch
Confidence            3688999999987 46778877654 888776543 2 33345567776543  22333333322  3799999999865


Q ss_pred             ccHHH--HHhccccCCEEEEeCC
Q 027664          118 HPLMP--LIGLLKSQGKLVLLGA  138 (220)
Q Consensus       118 ~~~~~--~~~~l~~~G~~v~~g~  138 (220)
                      .....  ....++.|-.++....
T Consensus        83 ~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          83 AHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHHHHHHHHHHHCTTCEEEECST
T ss_pred             hHHHhHHHHHHHHcCCEEEEccc
Confidence            44443  3444555556666543

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00047  Score=45.67  Aligned_cols=47  Identities=6%  Similarity=-0.041  Sum_probs=28.3

Q ss_pred             cccccceEeCCCCCCccccccccchhhhhhhHHH-hhcCCCCCCEEEE
Q 027664            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR-FYGLDKPGMHVGV   48 (220)
Q Consensus         2 ~v~~~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~-~~~~~~~~~~vlI   48 (220)
                      +++.+.++++|+++++++|++......+++.+.. ...++++|++|||
T Consensus        99 ~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~~~~~~G~~VLI  146 (147)
T d1qora1          99 NIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLI  146 (147)
T ss_dssp             EEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEE
T ss_pred             EEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence            5788999999999998866533211111000000 0134799999998

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.83  E-value=0.0035  Score=44.47  Aligned_cols=71  Identities=25%  Similarity=0.257  Sum_probs=53.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      -.|.+|+|.|-|.+|..+++++...|+++++++.+..+...+....|.+.+ +..   .  -+.-..|+.+=|+.+.
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~---~--~~~~~cDIl~PcA~~~  107 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APN---A--IYGVTCDIFAPCALGA  107 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGG---G--TTTCCCSEEEECSCSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCc---c--cccccccEeccccccc
Confidence            468999999999999999999999999999999998887777776776432 211   1  1112677777776554

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00027  Score=52.96  Aligned_cols=69  Identities=20%  Similarity=0.192  Sum_probs=43.8

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-chHHHHHHc-CC--CEEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERL-GA--DSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~~~~~~-g~--~~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      ++|||.|+ |-+|..++..+...|.+|+++++... +.... ... ..  -.+.+.   +.++....++|+||.+++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~-~~~~~~~~~d~~~~---~~~~~~~~~~d~VihlAa~   75 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV-EHWIGHENFELINH---DVVEPLYIEVDQIYHLASP   75 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT-GGGTTCTTEEEEEC---CTTSCCCCCCSEEEECCSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHH-HHhcCCCceEEEeh---HHHHHHHcCCCEEEECccc
Confidence            67999998 99999999888888999999875322 22222 111 11  112222   1222233479999999864

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.79  E-value=0.0085  Score=36.23  Aligned_cols=72  Identities=10%  Similarity=0.253  Sum_probs=51.1

Q ss_pred             CCCCCEEEEEccchhHHHH-HHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           40 DKPGMHVGVVGLGGLGHVA-VKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~-~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      +...+++.++|-|++|..+ +++++..|.+|...+.......+.+.+.|.+... ..+++.+    .+.|.|+-+.+-
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~-g~~~~~i----~~~d~vV~S~AI   77 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYI-GHAEEHI----EGASVVVVSSAI   77 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEE-SCCGGGG----TTCSEEEECTTS
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEE-CCccccC----CCCCEEEECCCc
Confidence            4567889999988889777 7899999999999998765544444667876443 3333222    367888766553

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.76  E-value=0.0013  Score=45.28  Aligned_cols=39  Identities=13%  Similarity=0.168  Sum_probs=33.6

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA   82 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~   82 (220)
                      ++|-|+|+|.+|...+.++...|.+|++.+.+++..+..
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhh
Confidence            458999999999999988888899999999998765544

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.75  E-value=0.0012  Score=46.05  Aligned_cols=86  Identities=23%  Similarity=0.271  Sum_probs=59.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc-cc-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV-HP-  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~-~~-  119 (220)
                      .|++|.|+|.|.+|..++++++.+|++|++.++...+..    ....    ...+   +.++....|++.-++... ++ 
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~----~~~~---l~~l~~~~D~v~~~~plt~~T~  112 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD----HPDF----DYVS---LEDLFKQSDVIDLHVPGIEQNT  112 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC----CTTC----EECC---HHHHHHHCSEEEECCCCCGGGT
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCccchhh----hcch----hHHH---HHHHHHhcccceeeeccccccc
Confidence            468999999999999999999999999999988654211    0111    1122   333334568887766532 21 


Q ss_pred             ---HHHHHhccccCCEEEEeCC
Q 027664          120 ---LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ---~~~~~~~l~~~G~~v~~g~  138 (220)
                         -...++.|+++..++.++-
T Consensus       113 ~li~~~~l~~mk~~a~lIN~aR  134 (199)
T d1dxya1         113 HIINEAAFNLMKPGAIVINTAR  134 (199)
T ss_dssp             TSBCHHHHHHSCTTEEEEECSC
T ss_pred             ccccHHHhhccCCceEEEeccc
Confidence               2457788888998888764

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.71  E-value=0.0093  Score=39.76  Aligned_cols=88  Identities=17%  Similarity=0.206  Sum_probs=56.4

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  123 (220)
                      ++|-++|.|.+|...+.-+...|.+|.+.+++.++.+.+ ...+....   .+   ..+.....|+++-|+.........
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~-~~~~~~~~---~~---~~e~~~~~diii~~v~~~~~~~~v   74 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL-VAAGASAA---RS---ARDAVQGADVVISMLPASQHVEGL   74 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-HHTTCEEC---SS---HHHHHTSCSEEEECCSCHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhh-hhhhcccc---ch---hhhhccccCeeeecccchhhHHHH
Confidence            358899999999988887777899999999998877666 44554322   11   223334567777777765433322


Q ss_pred             -------HhccccCCEEEEeCC
Q 027664          124 -------IGLLKSQGKLVLLGA  138 (220)
Q Consensus       124 -------~~~l~~~G~~v~~g~  138 (220)
                             ...+.++-.++.++.
T Consensus        75 ~~~~~~~~~~l~~g~iiid~st   96 (162)
T d3cuma2          75 YLDDDGLLAHIAPGTLVLECST   96 (162)
T ss_dssp             HHSTTCHHHHSCTTCEEEECSC
T ss_pred             HhccccccccCCCCCEEEECCC
Confidence                   233445555555543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.70  E-value=0.041  Score=37.14  Aligned_cols=130  Identities=18%  Similarity=0.211  Sum_probs=78.0

Q ss_pred             EEEEEccchhHHH-HHHHHHHC-C-CeEEEEe-CCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           45 HVGVVGLGGLGHV-AVKFAKAM-G-VKVTVIS-TSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~-~~~la~~~-g-~~vi~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      ++.|+|+|.+|.. .+...+.. + .+++.+. +++++.+.+.+.++...++  .+.+++-+ ...+|+|+-|+......
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~--~~~~ell~-~~~id~v~I~tp~~~h~   81 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF--DSYEELLE-SGLVDAVDLTLPVELNL   81 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE--SCHHHHHH-SSCCSEEEECCCGGGHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee--eeeecccc-ccccceeeccccccccc
Confidence            5789999999975 46666654 3 3777554 5555666667778876554  33332211 13799999999887677


Q ss_pred             HHHHhccccCCEEEEeCCCCCCCCCCchh------hh-cCCeE-EEEEecC-C--HHHHHHHHHHHHcCCCc
Q 027664          121 MPLIGLLKSQGKLVLLGAPEKPLELPAFP------LL-TGRKI-VGGSLIG-G--LKETQEMIDFAAKHNIR  181 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~------~~-~~~~~-~~~~~~~-~--~~~~~~~~~~i~~g~i~  181 (220)
                      +.+..++..|-.+ .+   ..+...+..+      +. .++.. ..++... +  ...++.+.+++.+|++.
T Consensus        82 ~~~~~al~~gk~V-~~---EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~ig  149 (181)
T d1zh8a1          82 PFIEKALRKGVHV-IC---EKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKPN  149 (181)
T ss_dssp             HHHHHHHHTTCEE-EE---ESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCCC
T ss_pred             cccccccccchhh-hc---CCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCCc
Confidence            7788888776444 44   3333333322      11 12333 3333322 1  24577788888888764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.0074  Score=45.24  Aligned_cols=105  Identities=14%  Similarity=0.103  Sum_probs=63.9

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHH----------HcCC---C-EEEcCCC
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE----------RLGA---D-SFLVSRD   96 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~----------~~g~---~-~~~~~~~   96 (220)
                      +.+.... ++++++||-+|+| .|..+.++|+..|+ ++++++.++...+.+.+          .+|.   . .++..+-
T Consensus       142 ~~~~~~~-l~~~~~vlD~GcG-~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         142 QMIDEIK-MTDDDLFVDLGSG-VGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHSC-CCTTCEEEEETCT-TSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHcC-CCCCCEEEEcCCC-CCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            3444444 7999999999998 58889999999988 89999999865443321          1121   1 1221111


Q ss_pred             H-HHHHHhcCCccEEEEc-CCC-c---ccHHHHHhccccCCEEEEeCC
Q 027664           97 Q-DEMQAAMGTMDGIIDT-VSA-V---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus        97 ~-~~~~~~~~~~d~v~d~-~g~-~---~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      . ....+....+|+|+-. ... +   ..+....+.|++||+++..-.
T Consensus       220 ~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         220 LSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             TSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             cccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence            1 1112211236777631 211 1   135667889999999998643

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.0012  Score=47.92  Aligned_cols=74  Identities=18%  Similarity=0.153  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc-chhHHHHHH-HHH--HCCCeEEEEeCCccchHHHHHHcC-----CC---EEEcCCCHHHHHHhc-----
Q 027664           42 PGMHVGVVGL-GGLGHVAVK-FAK--AMGVKVTVISTSPSKKSEAVERLG-----AD---SFLVSRDQDEMQAAM-----  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~-la~--~~g~~vi~~~~~~~~~~~~~~~~g-----~~---~~~~~~~~~~~~~~~-----  104 (220)
                      .|+.+||.|+ +++|.++++ +|+  ..|++|+.+++++++.+++.+++.     ..   ...|-.+++.++++.     
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            4677888897 899998876 555  368999999999988777765442     11   123555654443321     


Q ss_pred             ----C--CccEEEEcCC
Q 027664          105 ----G--TMDGIIDTVS  115 (220)
Q Consensus       105 ----~--~~d~v~d~~g  115 (220)
                          .  ..|++++.+|
T Consensus        85 ~~~~~~~~~~~lvnnag  101 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             hhhhccCceEEEEeccc
Confidence                1  4678888765

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.65  E-value=6.9e-07  Score=63.27  Aligned_cols=57  Identities=9%  Similarity=-0.024  Sum_probs=45.7

Q ss_pred             cceEeCCCCCCccccccccchhhhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC
Q 027664            6 HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV   67 (220)
Q Consensus         6 ~~~~~ip~~~s~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~   67 (220)
                      .++++|||+.+..+++++.....++++++.... .+.++    +|+|++|++++|+||.+|+
T Consensus       145 ~~l~~iPd~~~~~~~~~~~~~~~~~~~a~~~~~-~~~g~----~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         145 FNLLKLPDRDKAMEKINIAEVVGVQVISLDDAP-RGYGE----FDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             HHCEECSCHHHHHHTCCHHHHHTEEEECGGGHH-HHHHH----HHHTCSCEEEECTTCSSCC
T ss_pred             CeEEECCCCCChHHHHHHHHHHHHHHHHHHhCC-CCCeE----EeeCHHHHHHHHHHHHcCC
Confidence            369999998877778878888888888877654 34442    5899999999999999986

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.65  E-value=0.004  Score=41.84  Aligned_cols=95  Identities=17%  Similarity=0.282  Sum_probs=57.4

Q ss_pred             EEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHH--c----C---CCE-------EE--------cCCCHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVER--L----G---ADS-------FL--------VSRDQDE   99 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~--~----g---~~~-------~~--------~~~~~~~   99 (220)
                      +|-|.|-|-+|.++.+.+... ..+++.+-......+.++..  +    |   .+.       .+        ...++..
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~~   81 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPSQ   81 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGGG
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChHH
Confidence            578899999999999887755 45887776542222222221  1    1   111       11        1111222


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +.+...++|+|+||+|.-...+.+..++..|-+-|.+..+
T Consensus        82 i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP  121 (166)
T d2b4ro1          82 IPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAP  121 (166)
T ss_dssp             CCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSC
T ss_pred             ccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecc
Confidence            2222238999999999876677788888887655555443

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.0036  Score=45.14  Aligned_cols=76  Identities=14%  Similarity=0.257  Sum_probs=49.2

Q ss_pred             CCCCEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCccchHHH---HHHcCCCEEE--cCCCHHHHH----Hh---cC
Q 027664           41 KPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSKKSEA---VERLGADSFL--VSRDQDEMQ----AA---MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g--~~G~~~~~la~~~g~~vi~~~~~~~~~~~~---~~~~g~~~~~--~~~~~~~~~----~~---~~  105 (220)
                      -.|+++||.|+ |  ++|.+++..+...|++|+++.++++..+.+   .+..+....+  +..+...+.    +.   .+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            46899999987 5  688999998889999999999886543332   2333432222  223322222    22   23


Q ss_pred             CccEEEEcCCC
Q 027664          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~v~d~~g~  116 (220)
                      ..|+.+++++.
T Consensus        83 ~~d~~v~~a~~   93 (258)
T d1qsga_          83 KFDGFVHSIGF   93 (258)
T ss_dssp             SEEEEEECCCC
T ss_pred             ccceEEEeecc
Confidence            78999988765

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.64  E-value=0.0025  Score=40.29  Aligned_cols=37  Identities=19%  Similarity=0.365  Sum_probs=33.5

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      ++..++|+|+|+|.+|.-++..++.+|.+|+++.+.+
T Consensus        19 l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          19 IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             cCCCCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            4557899999999999999999999999999999875

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.63  E-value=0.0033  Score=39.77  Aligned_cols=46  Identities=20%  Similarity=0.153  Sum_probs=37.6

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ...+.... ..++++++|+|+|.+|+-++..++..|.+|.++.+.+.
T Consensus        11 ~~~~~~l~-~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          11 ATLVEELD-YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             HHHHHHCC-SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             HHHHHHHh-hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            33344444 47889999999999999999999999999999998753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.01  Score=39.02  Aligned_cols=94  Identities=23%  Similarity=0.138  Sum_probs=61.3

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCEEE-cCCCHHHHHHhc-CCccEEEEcCCCc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAV  117 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~~~-~~~~~~~~~~~~-~~~d~v~d~~g~~  117 (220)
                      .++++|.|.|.+|..+++.+...|.++++++..+++.......   .|...+. |..+++.+++.. +.+|.++-+++++
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d   82 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccH
Confidence            3579999999999999999999999999998887643322222   3454442 344566666553 4799999888876


Q ss_pred             ccH---HHHHhccccCCEEEEe
Q 027664          118 HPL---MPLIGLLKSQGKLVLL  136 (220)
Q Consensus       118 ~~~---~~~~~~l~~~G~~v~~  136 (220)
                      ..-   -...+.+.+.-+++..
T Consensus        83 ~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          83 ADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHHHHHHHHHHHTSSSCEEEE
T ss_pred             HHHHHHHHHHHHhCCCCceEEE
Confidence            321   1222334445455544

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.0013  Score=47.95  Aligned_cols=94  Identities=18%  Similarity=0.183  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcC-CCEEEcCCCHHHHHHhcCCccEEEEcCCCcc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLG-ADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      .++.+||-+|+|. |..+..+++.. +.+++.++.++...+.+.+... +..+.  .+...+.-..+.||+|+..-. +.
T Consensus        83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~--~d~~~l~~~~~sfD~v~~~~~-~~  158 (268)
T d1p91a_          83 DKATAVLDIGCGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCV--ASSHRLPFSDTSMDAIIRIYA-PC  158 (268)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEE--CCTTSCSBCTTCEEEEEEESC-CC
T ss_pred             CCCCEEEEeCCCC-cHHHHHHHHHCCCCEEEEecchHhhhhhhhccccccccee--eehhhccCCCCCEEEEeecCC-HH
Confidence            5778899999874 77777777775 6699999999887776655543 22222  111111111236999986544 44


Q ss_pred             cHHHHHhccccCCEEEEeCC
Q 027664          119 PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 ~~~~~~~~l~~~G~~v~~g~  138 (220)
                      .+.++.+.|++||.++....
T Consensus       159 ~~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         159 KAEELARVVKPGGWVITATP  178 (268)
T ss_dssp             CHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCcEEEEEee
Confidence            68999999999999998754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.60  E-value=0.0023  Score=46.53  Aligned_cols=58  Identities=16%  Similarity=0.143  Sum_probs=43.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcC--CccEEEEcCCCc
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSAV  117 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~d~v~d~~g~~  117 (220)
                      +|||.|+ |-+|..++..++..|.+|+.+++.+-               |..+.+.++++..  .+|+|++|++..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~---------------D~~d~~~~~~~l~~~~~d~vih~a~~~   63 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDL---------------DITNVLAVNKFFNEKKPNVVINCAAHT   63 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTC---------------CTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhc---------------cCCCHHHHHHHHHHcCCCEEEeecccc
Confidence            5899998 99999999999999999999887531               3344444444433  678999888754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.59  E-value=0.001  Score=45.75  Aligned_cols=35  Identities=14%  Similarity=0.344  Sum_probs=31.2

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCcc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS   77 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~   77 (220)
                      +++|+|+|+|+.|+.++..++..|. .|+++.+.+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            5789999999999999999999999 5888887764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.55  E-value=0.0026  Score=40.11  Aligned_cols=36  Identities=22%  Similarity=0.210  Sum_probs=32.5

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ..++++|+|+|.+|+-+++.+..+|.+|+++.+.+.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            347899999999999999999999999999988764

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.53  E-value=0.012  Score=39.99  Aligned_cols=86  Identities=8%  Similarity=0.086  Sum_probs=59.1

Q ss_pred             EEEEEccchhHHHHHHHHHHC-CCeEEEEe-CCccchHHHHHHcCCC---EEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM-GVKVTVIS-TSPSKKSEAVERLGAD---SFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~-g~~vi~~~-~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      ++.|+|+|.+|...++.++.. +.+++++. .+.++...+.+.++..   .+  +++.+.+-+ ...+|+|+-|+.....
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~-~~~iD~v~I~tp~~~h   79 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKI--HGSYESLLE-DPEIDALYVPLPTSLH   79 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEE--ESSHHHHHH-CTTCCEEEECCCGGGH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceee--cCcHHHhhh-ccccceeeecccchhh
Confidence            578899999999888887776 56888665 4455555666666642   22  233333222 2379999999998877


Q ss_pred             HHHHHhccccCCEE
Q 027664          120 LMPLIGLLKSQGKL  133 (220)
Q Consensus       120 ~~~~~~~l~~~G~~  133 (220)
                      ++.+..++..|-.+
T Consensus        80 ~~~~~~~l~~g~~v   93 (184)
T d1ydwa1          80 VEWAIKAAEKGKHI   93 (184)
T ss_dssp             HHHHHHHHTTTCEE
T ss_pred             cchhhhhhhcccee
Confidence            88888888876544

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.52  E-value=0.002  Score=46.37  Aligned_cols=35  Identities=31%  Similarity=0.350  Sum_probs=31.4

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      ..++|+|+|+|+.|++++..+...|.+|+++.+++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45789999999999999999988999999998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.52  E-value=0.004  Score=39.61  Aligned_cols=36  Identities=33%  Similarity=0.277  Sum_probs=32.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      .++++|+|+|+|.+|+-+++.+...|.+|+++.+.+
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            567899999999999999999999999999998775

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0048  Score=41.31  Aligned_cols=95  Identities=15%  Similarity=0.210  Sum_probs=59.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCC-CeEEEEeCCccchHHHHHHcCC---------C-------EEEcC--------CCHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGA---------D-------SFLVS--------RDQDE   99 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~~~~~g~---------~-------~~~~~--------~~~~~   99 (220)
                      +|-|.|-|-+|..+.+.+.... .+++.+.... ..+.++..+..         +       .+++.        .+++.
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~-~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~   81 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLL-DADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSS-CHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCC-CHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence            4778899999999998887764 4888777654 33333222211         1       11111        11222


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      +.+-.-++|+|+||+|.-...+.+..++..|-+-|++..+.
T Consensus        82 i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~  122 (166)
T d1gado1          82 LKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS  122 (166)
T ss_dssp             GCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             CCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccc
Confidence            22222289999999998767788888888886555554433

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=96.51  E-value=0.0044  Score=46.15  Aligned_cols=72  Identities=15%  Similarity=0.212  Sum_probs=47.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc--cchHHH--HHHc-CCCEE-EcCCCHHHHHHhcC--CccEEEEcCC
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP--SKKSEA--VERL-GADSF-LVSRDQDEMQAAMG--TMDGIIDTVS  115 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~--~~~~~~--~~~~-g~~~~-~~~~~~~~~~~~~~--~~d~v~d~~g  115 (220)
                      +|||.|+ |-+|..++..+...|.+|+++++-.  .....+  .+.. +.+.+ .|-.+.+.+.+...  ++|+||.+++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa   81 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence            6999997 9999999998888899999986422  121111  1222 23332 24455555655543  6899999987


Q ss_pred             C
Q 027664          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        82 ~   82 (338)
T d1orra_          82 Q   82 (338)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.48  E-value=0.0034  Score=39.86  Aligned_cols=38  Identities=29%  Similarity=0.453  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ++++++++|+|+|.+|.-++..++..|.+|+++.+.+.
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            57789999999999999999999999999999998864

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.47  E-value=0.0089  Score=43.04  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=47.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccch-HHHHHH----cCCCEEEcC------CC-HHHHHHh-------c
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK-SEAVER----LGADSFLVS------RD-QDEMQAA-------M  104 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~-~~~~~~----~g~~~~~~~------~~-~~~~~~~-------~  104 (220)
                      ..||.|+ +++|.++++.+...|++|+.++++.++. +.+.++    .+.+.....      .. ++.++++       .
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAF   82 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHHh
Confidence            5688897 8999999999999999999999886543 222222    233322211      11 2222221       2


Q ss_pred             CCccEEEEcCCC
Q 027664          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~v~d~~g~  116 (220)
                      +++|++++++|.
T Consensus        83 g~iDilvnnAG~   94 (266)
T d1mxha_          83 GRCDVLVNNASA   94 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999984

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.0022  Score=45.33  Aligned_cols=96  Identities=16%  Similarity=0.107  Sum_probs=60.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHH---CCCeEEEEeCCccchHHHHHHc---CCCEEEcCCCHHHHHHhc-CCccEEEE
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKA---MGVKVTVISTSPSKKSEAVERL---GADSFLVSRDQDEMQAAM-GTMDGIID  112 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~---~g~~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~-~~~d~v~d  112 (220)
                      ++++.+||-+|||. |..+..+++.   .+++|++++.+++-.+.+.+.+   +....+.....+ ..... +.+|+++-
T Consensus        37 ~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d-~~~~~~~~~d~i~~  114 (225)
T d1im8a_          37 VTADSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND-IRHVEIKNASMVIL  114 (225)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSC-TTTCCCCSEEEEEE
T ss_pred             cCCCCEEEEeccch-hhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccch-hhccccccceeeEE
Confidence            58899999999973 7777777764   4779999999998776665433   221111111111 11111 25666654


Q ss_pred             cCCC-----c---ccHHHHHhccccCCEEEEeC
Q 027664          113 TVSA-----V---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g~-----~---~~~~~~~~~l~~~G~~v~~g  137 (220)
                      +..-     .   ..++.+.+.|++||.++...
T Consensus       115 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         115 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            3221     1   24778899999999999864

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.47  E-value=0.0054  Score=46.96  Aligned_cols=74  Identities=14%  Similarity=0.086  Sum_probs=47.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-----------------ch---HHHHHHc--CCCEE-EcCCCHH
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-----------------KK---SEAVERL--GADSF-LVSRDQD   98 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-----------------~~---~~~~~~~--g~~~~-~~~~~~~   98 (220)
                      |.+|||.|+ |-+|..++..+...|.+|++++.-..                 ..   .......  +.+.+ .|-.+.+
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~   80 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE   80 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence            689999997 99999999988889999999863110                 01   1111111  22222 2445556


Q ss_pred             HHHHhcC--CccEEEEcCCC
Q 027664           99 EMQAAMG--TMDGIIDTVSA  116 (220)
Q Consensus        99 ~~~~~~~--~~d~v~d~~g~  116 (220)
                      .++++..  .+|+||.+++.
T Consensus        81 ~l~~~~~~~~~d~ViHlAa~  100 (393)
T d1i24a_          81 FLAESFKSFEPDSVVHFGEQ  100 (393)
T ss_dssp             HHHHHHHHHCCSEEEECCSC
T ss_pred             HHHHHHHhhcchheeccccc
Confidence            6666543  78999998863

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.43  E-value=0.0019  Score=47.36  Aligned_cols=34  Identities=32%  Similarity=0.368  Sum_probs=30.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      +++|+|+|+|+.|+.++..++..|.+|+++...+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5789999999999999999988999999998754

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=96.41  E-value=0.006  Score=45.72  Aligned_cols=72  Identities=15%  Similarity=0.071  Sum_probs=48.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc----hHHHH--HHcCCCEE-EcCCCHHHHHHhcC--CccEEEEcC
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK----KSEAV--ERLGADSF-LVSRDQDEMQAAMG--TMDGIIDTV  114 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~----~~~~~--~~~g~~~~-~~~~~~~~~~~~~~--~~d~v~d~~  114 (220)
                      +|||+|+ |-+|..++..+...|.+|+++++....    .....  ..-+++.+ .|-.+.+.+.+...  ++|+||.++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHlA   81 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEECC
Confidence            5999997 999999999888889999998753221    11111  11134333 34556666666543  899999988


Q ss_pred             CC
Q 027664          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      +.
T Consensus        82 a~   83 (338)
T d1udca_          82 GL   83 (338)
T ss_dssp             SC
T ss_pred             Cc
Confidence            64

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.40  E-value=0.028  Score=37.82  Aligned_cols=93  Identities=20%  Similarity=0.245  Sum_probs=60.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC--EEEcCCCHHHHHHhcCCccEEEEcCCCccc---
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD--SFLVSRDQDEMQAAMGTMDGIIDTVSAVHP---  119 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~---  119 (220)
                      .|-++|.|.+|..++.-+...|.+|++.++++++.+++.+. ++.  ........+.+.+.....|.++-++.....   
T Consensus         4 nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~   82 (176)
T d2pgda2           4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN-EAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (176)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT-TTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             cEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh-ccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence            47889999999999988888899999999999888877543 321  111122333444445567777777765432   


Q ss_pred             -HHHHHhccccCCEEEEeCC
Q 027664          120 -LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 -~~~~~~~l~~~G~~v~~g~  138 (220)
                       .+.+...+.++-.++..+.
T Consensus        83 v~~~l~~~~~~g~iiid~sT  102 (176)
T d2pgda2          83 FIEKLVPLLDIGDIIIDGGN  102 (176)
T ss_dssp             HHHHHHHHCCTTCEEEECSC
T ss_pred             HHHHHHhccccCcEEEecCc
Confidence             2344455666666666543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.39  E-value=0.0032  Score=43.54  Aligned_cols=98  Identities=22%  Similarity=0.241  Sum_probs=60.4

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHH---HHcCCCEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~---~~~g~~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      ...+++| +||-+||| .|..+..+++ .|.+|++++.+++..+.+.   +..+.+.+ +...+.... ...+.||+|+.
T Consensus        26 ~~~~~~g-rvLDiGcG-~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~I~~  101 (198)
T d2i6ga1          26 AKVVAPG-RTLDLGCG-NGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL-TFDGEYDFILS  101 (198)
T ss_dssp             HTTSCSC-EEEEETCT-TSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC-CCCCCEEEEEE
T ss_pred             cccCCCC-cEEEECCC-CCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccc-cccccccEEEE
Confidence            3434555 89999997 6888877776 4899999999987665442   23344321 211121110 11247999885


Q ss_pred             cCC-----Cc---ccHHHHHhccccCCEEEEeCC
Q 027664          113 TVS-----AV---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~g-----~~---~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ...     ..   ..+..+.++|+++|.++....
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            321     11   145667889999999887644

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.37  E-value=0.0039  Score=39.41  Aligned_cols=47  Identities=21%  Similarity=0.321  Sum_probs=37.2

Q ss_pred             hhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           28 ITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        28 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      .++..++. ..  +..++++|+|+|.+|+-+++.++.+|.+|+++.+.+.
T Consensus        10 ~~s~~~l~-l~--~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          10 VDSTGALD-FQ--NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             EEHHHHTS-CS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EchhHhhC-cc--cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            34555552 22  3458899999999999999999999999999998763

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.30  E-value=0.0046  Score=45.53  Aligned_cols=93  Identities=16%  Similarity=0.162  Sum_probs=58.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc---CC-----CEEEcCCCHHHHH-Hh--cCCccE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA-----DSFLVSRDQDEMQ-AA--MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~---g~-----~~~~~~~~~~~~~-~~--~~~~d~  109 (220)
                      +++.+||-+||| .|..+..+++. |.+|++++.+++-+..+.+..   +.     ...+...+..... ..  .+.||.
T Consensus        55 ~~~~~vLD~GcG-~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~  132 (292)
T d1xvaa_          55 HGCHRVLDVACG-TGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  132 (292)
T ss_dssp             TTCCEEEESSCT-TSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCC-CcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence            567899999997 48888888875 899999999987655443321   11     1111111111111 11  237999


Q ss_pred             EEEcCCC------c--------ccHHHHHhccccCCEEEE
Q 027664          110 IIDTVSA------V--------HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus       110 v~d~~g~------~--------~~~~~~~~~l~~~G~~v~  135 (220)
                      |+.....      .        ..+..+.+.|++||.++.
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            8854321      1        146788899999999886

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.033  Score=36.53  Aligned_cols=92  Identities=10%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHC--CCeEEEEeCC--ccchHHHHHHcCCCEEEcCCCHH---------------------
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAM--GVKVTVISTS--PSKKSEAVERLGADSFLVSRDQD---------------------   98 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~--g~~vi~~~~~--~~~~~~~~~~~g~~~~~~~~~~~---------------------   98 (220)
                      +|.|.|+ |.+|..+..+.+.+  ..+|+..+-.  -+.+.+..+++....++-.++..                     
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g~   82 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQ   82 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEESH
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccCh
Confidence            6899998 99999999998876  3477665543  33455555678877775443321                     


Q ss_pred             -HHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664           99 -EMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus        99 -~~~~~~--~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                       .+.++.  ..+|+|+.+..+-..+...+..++.+-++.+.
T Consensus        83 ~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLA  123 (151)
T d1q0qa2          83 QAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA  123 (151)
T ss_dssp             HHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC
T ss_pred             HHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEE
Confidence             111111  26899999987776788888888887776654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0036  Score=39.37  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=31.7

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      .++++|+|+|.+|+-+++.++.+|.+|.++.+.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            47899999999999999999999999999988763

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=96.29  E-value=0.0049  Score=43.51  Aligned_cols=99  Identities=16%  Similarity=0.111  Sum_probs=59.7

Q ss_pred             HHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEc
Q 027664           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      ++......++.+||-+|||. |..+..+++ .|.+|++++.+++..+.+.+..+-..-+...+.+.. ...+.||+|+- 
T Consensus        12 ~~~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~-   87 (225)
T d2p7ia1          12 VRAFTPFFRPGNLLELGSFK-GDFTSRLQE-HFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVL-   87 (225)
T ss_dssp             HHHHGGGCCSSCEEEESCTT-SHHHHHHTT-TCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEE-
T ss_pred             HHHhhhhCCCCcEEEEeCCC-cHHHHHHHH-cCCeEEEEeCcHHHhhhhhccccccccccccccccc-ccccccccccc-
Confidence            33443345677899999874 777766654 578999999998877766555442211222222211 12347999873 


Q ss_pred             CCC------cc-cHHHHH-hccccCCEEEEe
Q 027664          114 VSA------VH-PLMPLI-GLLKSQGKLVLL  136 (220)
Q Consensus       114 ~g~------~~-~~~~~~-~~l~~~G~~v~~  136 (220)
                      .+.      +. .+..+. ++|++||.++..
T Consensus        88 ~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          88 THVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             ESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence            222      11 234555 678999999875

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.28  E-value=0.0067  Score=45.60  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHH-HHCCC-eEEEEeCCccchHHHHHHcC----CCEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFA-KAMGV-KVTVISTSPSKKSEAVERLG----ADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la-~~~g~-~vi~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      +..+++.|+|+|..+...++.. ..++. +|.+.+++.++.+.+.+.+.    .+... .   +.+++...+.|+|+-|+
T Consensus       126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~-~---~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         126 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRR-A---SSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEE-C---SSHHHHHTTCSEEEECC
T ss_pred             cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCcee-c---CCHHHHHhcCCceeecc
Confidence            5668899999999998887754 56788 89999999888777776653    22221 1   22455567899999887


Q ss_pred             CCccc-HHHHHhccccCCEEEEeCCCCCC-CCCCch
Q 027664          115 SAVHP-LMPLIGLLKSQGKLVLLGAPEKP-LELPAF  148 (220)
Q Consensus       115 g~~~~-~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~  148 (220)
                      ..... .-.-.+.+++|-++..+|..... .+++..
T Consensus       202 as~s~~Pv~~~~~l~pG~hI~aiGs~~p~~~Eld~~  237 (340)
T d1x7da_         202 ADKAYATIITPDMLEPGMHLNAVGGDCPGKTELHAD  237 (340)
T ss_dssp             CCSSEEEEECGGGCCTTCEEEECSCCBTTBEEECHH
T ss_pred             ccCCCCcccchhhcCCCCEEeecccchhhhhccCHH
Confidence            65321 11123578899899898875432 344443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0044  Score=39.35  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      .++++|+|+|.+|+-+++++..+|.+|.++.+.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            4789999999999999999999999999999876

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.25  E-value=0.0017  Score=44.87  Aligned_cols=82  Identities=13%  Similarity=0.093  Sum_probs=54.7

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc-CC----CEEEcCCC---HHHHHHhcCCccEEEEcCC
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-GA----DSFLVSRD---QDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~-g~----~~~~~~~~---~~~~~~~~~~~d~v~d~~g  115 (220)
                      .+|.|+|+|..|.+.+.++...|.+|....++++..+.+.+.- ..    ...+ +..   ...+.+...+.|+++-+++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l-~~~i~~t~~l~~a~~~ad~iiiavP   86 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQL-ASNITFTSDVEKAYNGAEIILFVIP   86 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBC-CTTEEEESCHHHHHTTCSCEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccc-ccccccchhhhhccCCCCEEEEcCc
Confidence            3699999999999999888888889999999887666553321 00    0001 011   1234555568899999998


Q ss_pred             CcccHHHHHhcc
Q 027664          116 AVHPLMPLIGLL  127 (220)
Q Consensus       116 ~~~~~~~~~~~l  127 (220)
                      .. .+...++.+
T Consensus        87 s~-~~~~~~~~~   97 (189)
T d1n1ea2          87 TQ-FLRGFFEKS   97 (189)
T ss_dssp             HH-HHHHHHHHH
T ss_pred             HH-HHHHHHHHH
Confidence            76 455555443

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.24  E-value=0.009  Score=43.54  Aligned_cols=96  Identities=23%  Similarity=0.184  Sum_probs=60.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHc----CC-----CEEEcCCCHHHHHHhcCCccEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL----GA-----DSFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~----g~-----~~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      ...++|||+|+|. |..+..++++.+. +|.++.-.++=.+.+.+-+    ++     -.++..+....+++..+.+|+|
T Consensus        74 ~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            4568999998764 6666677787776 8888888876443332222    11     1222222334555544589999


Q ss_pred             E-EcCCC---------cccHHHHHhccccCCEEEEeC
Q 027664          111 I-DTVSA---------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 ~-d~~g~---------~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      + |....         .+.++.+.++|+++|.++.-.
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            6 43321         123678889999999998753

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.22  E-value=0.032  Score=33.03  Aligned_cols=68  Identities=24%  Similarity=0.344  Sum_probs=47.7

Q ss_pred             CEEEEEccchhHHHH-HHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           44 MHVGVVGLGGLGHVA-VKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~-~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+|-++|-|++|+.. +++++..|..|...+......-..++.+|+..... .+.+.+    .++|.|+-+..-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~g-h~~~~i----~~~d~vV~SsAI   70 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVP-HSADNW----YDPDLVIKTPAV   70 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESS-CCTTSC----CCCSEEEECTTC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEee-eccccc----CCCCEEEEecCc
Confidence            357778988888755 68899999999999988766555568889864432 332222    367888766553

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.21  E-value=0.074  Score=34.59  Aligned_cols=96  Identities=17%  Similarity=0.182  Sum_probs=59.5

Q ss_pred             CEEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHH----HHHHhcC---CccEEEEcCC
Q 027664           44 MHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD----EMQAAMG---TMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G-~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~---~~d~v~d~~g  115 (220)
                      ++|.|+| .|.+|...+..++..|.+|.+.+++....... ...+++.++......    .+.+...   .=.+++|+.+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S   88 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAES-ILANADVVIVSVPINLTLETIERLKPYLTENMLLADLTS   88 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHH-HHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccch-hhhhccccccccchhhheeeeecccccccCCceEEEecc
Confidence            5799999 59999999999999999999999987655444 234566666555532    2222222   2247788887


Q ss_pred             CcccHHHHHhccccCCEEEEeCCCCC
Q 027664          116 AVHPLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~G~~v~~g~~~~  141 (220)
                      ........+.... .++++......+
T Consensus        89 vk~~~~~~~~~~~-~~~~v~~hP~~G  113 (152)
T d2pv7a2          89 VKREPLAKMLEVH-TGAVLGLHPMFG  113 (152)
T ss_dssp             CCHHHHHHHHHHC-SSEEEEEEECSC
T ss_pred             cCHHHHHHHHHHc-cCCEEEecccCC
Confidence            6533323222222 245554433333

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.19  E-value=0.017  Score=43.14  Aligned_cols=35  Identities=20%  Similarity=0.127  Sum_probs=29.6

Q ss_pred             CCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           43 GMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        43 ~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ++..||.|+   .++|.++++.+...|++|+++..+..
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~   39 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPV   39 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchh
Confidence            577899994   38999999999999999999887654

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.15  E-value=0.0084  Score=40.26  Aligned_cols=94  Identities=16%  Similarity=0.200  Sum_probs=56.6

Q ss_pred             EEEEEccchhHHHHHHHHHH---CCCeEEEEeCCccchHHHHHHcCC---------CE-------EEc--------CCCH
Q 027664           45 HVGVVGLGGLGHVAVKFAKA---MGVKVTVISTSPSKKSEAVERLGA---------DS-------FLV--------SRDQ   97 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~---~g~~vi~~~~~~~~~~~~~~~~g~---------~~-------~~~--------~~~~   97 (220)
                      +|.|.|-|-+|..+.+.+..   .+.+|+.+-... ..+.++..+..         +.       +++        ..++
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~-~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLT-DTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSS-CHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCc-cHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            68899999999999987653   246888776653 33333222211         11       111        1111


Q ss_pred             HHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664           98 DEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus        98 ~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +.+.+-.-++|+|+||+|.-...+.+..++..|-+-|++..+
T Consensus        81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP  122 (169)
T d1hdgo1          81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAP  122 (169)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             hhCCccccCCCEEEEecceeccccchhhhccCCCceEEEecc
Confidence            222211128999999999876778888888887545555443

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.14  E-value=0.006  Score=39.35  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ++++++++|+|+|.+|+-++..++..|.+|.++.+.+.
T Consensus        32 ~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          32 LIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             hccCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            56789999999999999999999999999999998764

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.14  E-value=0.0028  Score=47.39  Aligned_cols=98  Identities=21%  Similarity=0.140  Sum_probs=54.0

Q ss_pred             HHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHH---HHcCC-C--EEEcCCCHHHHHHhcC
Q 027664           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAV---ERLGA-D--SFLVSRDQDEMQAAMG  105 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~---~~~g~-~--~~~~~~~~~~~~~~~~  105 (220)
                      ++.+...+.+|++||-+|+|. |..++.+|+ .|+ +|++++.++. ...+.   +..+. +  .+++. +...+....+
T Consensus        24 ai~~~~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~-~~~~~~~~~~   99 (316)
T d1oria_          24 SMFHNRHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKG-KVEEVELPVE   99 (316)
T ss_dssp             HHHTCHHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEES-CTTTCCCSSS
T ss_pred             HHHhccccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEec-cHHHcccccc
Confidence            344333346899999999874 777766666 587 8999997754 22222   22232 1  12221 1111111123


Q ss_pred             CccEEEEc-CCC----ccc----HHHHHhccccCCEEE
Q 027664          106 TMDGIIDT-VSA----VHP----LMPLIGLLKSQGKLV  134 (220)
Q Consensus       106 ~~d~v~d~-~g~----~~~----~~~~~~~l~~~G~~v  134 (220)
                      .+|+++.. .+.    ...    +...-+.|+++|+++
T Consensus       100 ~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         100 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            78988642 221    112    234457999999885

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.005  Score=42.45  Aligned_cols=39  Identities=26%  Similarity=0.360  Sum_probs=34.2

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA   82 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~   82 (220)
                      ++|.|+|+|.+|...++++...|.+|+..+.+++..+.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHH
Confidence            579999999999999999999999999999998765444

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.12  E-value=0.0043  Score=44.36  Aligned_cols=92  Identities=15%  Similarity=0.105  Sum_probs=57.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCCEEEcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      .++++||-+||| .|..+..+++. |.+|++++.+++.++.+.+.   .+...-+-..+.... ...+.||+|+-..+.-
T Consensus        36 ~~~~~vLDiGCG-~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~i~~~~~~~  112 (246)
T d1y8ca_          36 LVFDDYLDLACG-TGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNL-NINRKFDLITCCLDST  112 (246)
T ss_dssp             CCTTEEEEETCT-TSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGC-CCSCCEEEEEECTTGG
T ss_pred             CCCCeEEEEeCc-CCHHHHHHHHh-CCccEeeccchhhhhhccccccccCccceeeccchhhh-cccccccccceeeeee
Confidence            456789999997 47777777764 78999999998766555332   233211222222111 1124799998532221


Q ss_pred             ----------ccHHHHHhccccCCEEEE
Q 027664          118 ----------HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus       118 ----------~~~~~~~~~l~~~G~~v~  135 (220)
                                ..++.+.++|++||.++.
T Consensus       113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         113 NYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             GGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence                      135678889999999885

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.12  E-value=0.013  Score=39.84  Aligned_cols=90  Identities=14%  Similarity=0.169  Sum_probs=54.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccc--hHHHHHHcCCC----EEEcC---CCHHHHHHhcCCccEEEEcCC
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK--KSEAVERLGAD----SFLVS---RDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~--~~~~~~~~g~~----~~~~~---~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      +|.|+|+|.+|.+.+..+...|.+|....+..+.  .....+ ..-.    ..+..   ...+.+.+.....|+++.++.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA-GREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT-TCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhh-hhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            5889999999999998887778899998875432  222211 1100    00000   012345555668999999999


Q ss_pred             CcccHHHHHhcccc---CCEEEEe
Q 027664          116 AVHPLMPLIGLLKS---QGKLVLL  136 (220)
Q Consensus       116 ~~~~~~~~~~~l~~---~G~~v~~  136 (220)
                      .. .+...++.+.+   ...++.+
T Consensus        81 s~-~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          81 TD-GVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             GG-GHHHHHHHHTTTCCSCEEEEC
T ss_pred             hh-hhHHHHHhhccccccceeccc
Confidence            76 45555544333   2444443

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.11  E-value=0.049  Score=34.96  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=25.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHH-CCCeEEEEeCCcc
Q 027664           45 HVGVVGL-GGLGHVAVKFAKA-MGVKVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~-~g~~vi~~~~~~~   77 (220)
                      +|.|.|+ |-+|..+++.... .+.+++......+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~   35 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD   35 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence            5889997 9999999887665 5668776665543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.08  E-value=0.0041  Score=39.54  Aligned_cols=34  Identities=26%  Similarity=0.244  Sum_probs=30.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      ..++++|+|+|.+|+-+++.++.+|.+|.++.++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            3467999999999999999999999999998754

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.021  Score=37.92  Aligned_cols=129  Identities=16%  Similarity=0.149  Sum_probs=76.1

Q ss_pred             EEEEEccchhHHH-HHHHHHHC-CCeEEEEe-CCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027664           45 HVGVVGLGGLGHV-AVKFAKAM-GVKVTVIS-TSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        45 ~vlI~G~g~~G~~-~~~la~~~-g~~vi~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~  121 (220)
                      +|.|+|+|.+|.- .+...+.. +.+++.+. ++.++...+.+.++...   +...+.   +...+|+|+-|+......+
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~---l~~~~D~V~I~tp~~~h~~   76 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPY---ADSLSS---LAASCDAVFVHSSTASHFD   76 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCB---CSSHHH---HHTTCSEEEECSCTTHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccc---cccchh---hhhhcccccccccchhccc
Confidence            5789999999964 56666554 66777655 55666777777887652   223332   3357999999998887778


Q ss_pred             HHHhccccCCEEEEeCCCCCCCCCCchh------h-hcCCeEE-EEEecCC-HHHHHHHHHHHHcCCCccc
Q 027664          122 PLIGLLKSQGKLVLLGAPEKPLELPAFP------L-LTGRKIV-GGSLIGG-LKETQEMIDFAAKHNIRAD  183 (220)
Q Consensus       122 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~------~-~~~~~~~-~~~~~~~-~~~~~~~~~~i~~g~i~~~  183 (220)
                      .+..++..|-.+ .+   ..+...+..+      . -.++..+ .++.... ....+.+.+++.+|.+.-.
T Consensus        77 ~~~~al~~gk~V-~~---EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~~~~~~~~~~~i~~g~ig~~  143 (164)
T d1tlta1          77 VVSTLLNAGVHV-CV---DKPLAENLRDAERLVELAARKKLTLMVGFNRRFFVGCARHFIECVQNQTVPQT  143 (164)
T ss_dssp             HHHHHHHTTCEE-EE---ESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGHHHHHHHHHHHHHHTCCCTT
T ss_pred             ccccccccccee-ec---cccccCCHHHHHHHHHHHHHcCCcEEEEeccccCHHHHHHHHHHHHCCCCCCE
Confidence            888888777554 44   2232222221      1 1223322 3322222 2233566777778776543

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.08  E-value=0.0082  Score=44.73  Aligned_cols=74  Identities=12%  Similarity=0.117  Sum_probs=46.8

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-----chHHH---HHHcCC-CE-E--EcCCCHHHHHHhc-C-Ccc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-----KKSEA---VERLGA-DS-F--LVSRDQDEMQAAM-G-TMD  108 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-----~~~~~---~~~~g~-~~-~--~~~~~~~~~~~~~-~-~~d  108 (220)
                      +++||.|+ |-+|..++..+...|.+|+++++...     +...+   ...... .. .  .|..+.+.+.+.. . ++|
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D   81 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD   81 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence            57999998 99999999988889999999997532     11111   011111 11 1  2333444555443 2 899


Q ss_pred             EEEEcCCCc
Q 027664          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~v~d~~g~~  117 (220)
                      +|+.+++..
T Consensus        82 ~Vih~Aa~~   90 (339)
T d1n7ha_          82 EVYNLAAQS   90 (339)
T ss_dssp             EEEECCSCC
T ss_pred             hhhhccccc
Confidence            999999763

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.06  E-value=0.0052  Score=39.22  Aligned_cols=37  Identities=14%  Similarity=0.186  Sum_probs=33.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      +..++++|+|+|.+|+-+++.++.+|.+|+++.+.+.
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            4468999999999999999999999999999988763

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0055  Score=39.03  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=31.6

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      .++++|+|+|.+|+-++..++.+|.+|+++.+.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            3789999999999999999999999999999876

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0065  Score=45.13  Aligned_cols=100  Identities=20%  Similarity=0.107  Sum_probs=55.6

Q ss_pred             hHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchH--HHHHHcCC-C--EEEcCCCHHHHHHhcC
Q 027664           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS--EAVERLGA-D--SFLVSRDQDEMQAAMG  105 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~--~~~~~~g~-~--~~~~~~~~~~~~~~~~  105 (220)
                      .|+.+...+.+|++||.+|+| .|..++.+|++ |+ +|++++.++....  +..+..+. +  .+++ .+...+....+
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG-~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~-~~~~~l~~~~~  101 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCG-TGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIK-GKIEEVHLPVE  101 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCT-TSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEE-SCTTTSCCSCS
T ss_pred             HHHHhccccCCcCEEEEECCC-CCHHHHHHHHc-CCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEE-eeHHHhcCccc
Confidence            445555446789999999987 57777766664 77 8999998875321  11122332 1  1222 22111111123


Q ss_pred             CccEEEE-cCCC----cccHHH----HHhccccCCEEE
Q 027664          106 TMDGIID-TVSA----VHPLMP----LIGLLKSQGKLV  134 (220)
Q Consensus       106 ~~d~v~d-~~g~----~~~~~~----~~~~l~~~G~~v  134 (220)
                      .+|+|+- ..+.    ...+..    .-+.|+++|+++
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            7999874 2222    111222    335789999886

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.019  Score=43.05  Aligned_cols=74  Identities=15%  Similarity=0.128  Sum_probs=48.4

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-hH---HH--HHHcCCCEE-EcCCCHHHHHHhcC--CccEEEEc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KS---EA--VERLGADSF-LVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-~~---~~--~~~~g~~~~-~~~~~~~~~~~~~~--~~d~v~d~  113 (220)
                      +.|||.|+ |-+|..++..+...|.+|+++++.... ..   ..  ...-+.+.+ .|-.+.+.++....  ++|+||.+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   81 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence            56899997 999999998888889999998643221 11   11  111233322 34455666665543  89999999


Q ss_pred             CCCc
Q 027664          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      ++..
T Consensus        82 Aa~~   85 (347)
T d1z45a2          82 AGLK   85 (347)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            8753

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.01  E-value=0.0056  Score=43.42  Aligned_cols=37  Identities=27%  Similarity=0.283  Sum_probs=33.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      +.+++|+|+|+|+.|+.++..++..|.+|+++...+.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            4678999999999999999999999999999987764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.01  E-value=0.007  Score=40.12  Aligned_cols=75  Identities=15%  Similarity=0.145  Sum_probs=47.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHc-------CCCEEEcCCCHHHHHHhcCCccEEEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL-------GADSFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      ++..+|.|+|+|.+|..++.++...+. +++..+.++++.+-...++       +....+...  ...++...+.|+|+-
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~adiVvi   82 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE--YSYEAALTGADCVIV   82 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE--CSHHHHHTTCSEEEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc--CchhhhhcCCCeEEE
Confidence            566889999999999988887777776 8888887776543332222       111111111  112233457889998


Q ss_pred             cCCCc
Q 027664          113 TVSAV  117 (220)
Q Consensus       113 ~~g~~  117 (220)
                      +.|.+
T Consensus        83 tag~~   87 (154)
T d1pzga1          83 TAGLT   87 (154)
T ss_dssp             CCSCS
T ss_pred             ecccc
Confidence            88753

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0065  Score=41.72  Aligned_cols=114  Identities=17%  Similarity=0.211  Sum_probs=72.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc-c-
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH-P-  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~-~-  119 (220)
                      .+.++.|+|.|.+|..++++++.+|.+|+..++......     ...   ....+   ++++....|++.-+++-.+ + 
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-----~~~---~~~~~---l~ell~~sDii~i~~plt~~T~  111 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL-----GNA---TQVQH---LSDLLNMSDVVSLHVPENPSTK  111 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC-----TTC---EECSC---HHHHHHHCSEEEECCCSSTTTT
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeeccccccchh-----hhh---hhhhh---HHHHHhhccceeecccCCcchh
Confidence            578999999999999999999999999999987653211     011   11122   3333345788887765321 1 


Q ss_pred             ---HHHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce-EEeecc
Q 027664          120 ---LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPAD  190 (220)
Q Consensus       120 ---~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~-~~~~~~  190 (220)
                         =.+.++.|+++..+|.++-..   -                     -+.+.+.+++.++++..-. ++|+-|
T Consensus       112 ~li~~~~l~~mk~~a~lIN~aRG~---l---------------------vde~aL~~aL~~~~~~~a~lDV~~~E  162 (188)
T d1sc6a1         112 NMMGAKEISLMKPGSLLINASRGT---V---------------------VDIPALADALASKHLAGAAIDVFPTE  162 (188)
T ss_dssp             TCBCHHHHHHSCTTEEEEECSCSS---S---------------------BCHHHHHHHHHTTSEEEEEEEC----
T ss_pred             hhccHHHHhhCCCCCEEEEcCcHH---h---------------------hhhHHHHHHHHcCCceEEEEecCCCC
Confidence               246788888888888875422   0                     1245666777777776543 555544

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=95.99  E-value=0.0071  Score=44.06  Aligned_cols=34  Identities=21%  Similarity=0.120  Sum_probs=28.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~   78 (220)
                      .+||.|+ +++|.++++.+...|++|+++.++.++
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   38 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAA   38 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence            4577787 899999999988999999988776543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.97  E-value=0.004  Score=39.60  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=33.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      +..++++|+|+|.+|+-+++.++.+|.+|.++.+.+.
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            3457899999999999999999999999999988764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0062  Score=45.59  Aligned_cols=72  Identities=11%  Similarity=0.031  Sum_probs=47.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEE-cCCCH-HHHHHhcCCccEEEEcCCC
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFL-VSRDQ-DEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~-~~~~~~~~~~d~v~d~~g~  116 (220)
                      +|||.|+ |-+|..+++.+...|. +|++++........+.+.-+++.+. |-.+. +..+....++|+|+.+++.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            6899997 9999999987777784 8999887765544442222233332 22232 2233344589999999885

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.96  E-value=0.021  Score=36.38  Aligned_cols=29  Identities=24%  Similarity=0.429  Sum_probs=24.6

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEe
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVIS   73 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~   73 (220)
                      +|.|+|+ |-+|++..++++..|.+++...
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~i   31 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKV   31 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEE
Confidence            5889997 9999999999999998776554

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.007  Score=40.76  Aligned_cols=99  Identities=13%  Similarity=0.058  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc--CCCEEEc--CCCHHHHHHhcCCccEEEEcCC
Q 027664           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--GADSFLV--SRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~--g~~~~~~--~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      -.|++++|+|- .-+|.=++.++...|+.|+.+.............+  -....-+  ....+.+++.....|+++-++|
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG  106 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVP  106 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEccC
Confidence            47899999996 67899888888889999987765532110000000  0111111  1223446666667999999999


Q ss_pred             CcccHHHHHhccccCCEEEEeCCCC
Q 027664          116 AVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .+. +..--+.+++|..++.+|...
T Consensus       107 ~p~-~~i~~d~ik~GavvIDvGi~~  130 (171)
T d1edza1         107 SEN-YKFPTEYIKEGAVCINFACTK  130 (171)
T ss_dssp             CTT-CCBCTTTSCTTEEEEECSSSC
T ss_pred             CCc-cccChhhcccCceEeeccccc
Confidence            874 323445778888888988643

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.015  Score=36.91  Aligned_cols=85  Identities=16%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             CCCCEEEEEccchh--H---------HHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-CCEEE-cCCCHHHHHHhcC--
Q 027664           41 KPGMHVGVVGLGGL--G---------HVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADSFL-VSRDQDEMQAAMG--  105 (220)
Q Consensus        41 ~~~~~vlI~G~g~~--G---------~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-~~~~~-~~~~~~~~~~~~~--  105 (220)
                      ..-++|||+|+|+.  |         ..++..+|..|.+++.+..+++....   ++. +++++ .+=..+.+.++..  
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVst---d~d~aD~lYfePlt~e~v~~Ii~~E   81 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMT---DPEMADATYIEPIHWEVVRKIIEKE   81 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGG---CGGGSSEEECSCCCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhc---ChhhcceeeeecCCHHHHHHHHHHh
Confidence            34588999998752  3         44455566779999999999876532   232 35553 3444566666654  


Q ss_pred             CccEEEEcCCCcccHHHHHhccc
Q 027664          106 TMDGIIDTVSAVHPLMPLIGLLK  128 (220)
Q Consensus       106 ~~d~v~d~~g~~~~~~~~~~~l~  128 (220)
                      .+|.++-+.|++..++.+..+.+
T Consensus        82 ~pd~il~~~GGQtalnla~~L~~  104 (127)
T d1a9xa3          82 RPDAVLPTMGGQTALNCALELER  104 (127)
T ss_dssp             CCSEEECSSSHHHHHHHHHHHHH
T ss_pred             CcCCeEEEeeeehHhHHHHHHHH
Confidence            89999999998866666655543

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.95  E-value=0.013  Score=42.96  Aligned_cols=34  Identities=21%  Similarity=0.451  Sum_probs=31.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      .|.+|+|.|-|.+|..+++.+...|++|+++..+
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~   68 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGES   68 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcc
Confidence            6789999999999999999999999999988754

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.0095  Score=45.03  Aligned_cols=73  Identities=15%  Similarity=0.157  Sum_probs=45.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc-----chHHHHHH---cCCCEEE---cCCCHHHHHHhcC--CccE
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-----KKSEAVER---LGADSFL---VSRDQDEMQAAMG--TMDG  109 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~-----~~~~~~~~---~g~~~~~---~~~~~~~~~~~~~--~~d~  109 (220)
                      +.|||.|+ |-+|..++..+...|.+|+++++...     +...+...   ......+   |-.+.+.+++...  .+|+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   81 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE   81 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence            57899997 99999999988888999999998543     11111111   1111111   3345556665544  7899


Q ss_pred             EEEcCCC
Q 027664          110 IIDTVSA  116 (220)
Q Consensus       110 v~d~~g~  116 (220)
                      |+.+++.
T Consensus        82 v~h~aa~   88 (357)
T d1db3a_          82 VYNLGAM   88 (357)
T ss_dssp             EEECCCC
T ss_pred             EEEeecc
Confidence            9999875

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.93  E-value=0.038  Score=39.61  Aligned_cols=42  Identities=21%  Similarity=0.300  Sum_probs=34.3

Q ss_pred             HHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      +...+.--.|.+|+|.|.|.+|..+++.+...|++|+++..+
T Consensus        27 ~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~   68 (255)
T d1bgva1          27 MKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGP   68 (255)
T ss_dssp             HHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEET
T ss_pred             HHhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            444332247899999999999999999999999999988754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.92  E-value=0.083  Score=34.24  Aligned_cols=72  Identities=15%  Similarity=0.225  Sum_probs=45.3

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcC-CCEEE---cCCCHHHHHHhcCCccEEEEcCCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLG-ADSFL---VSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g-~~~~~---~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      .+|.|+|| |.+|..++.++...|.  +++.++..+.+. +.. ++. .....   .........+...+.|+|+-+.|.
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~-~a~-Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~   78 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VAA-DLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV   78 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HHH-HHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch-hhH-HHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCc
Confidence            36899997 9999999998888876  687887765433 222 222 11000   011122333445689999999885


Q ss_pred             c
Q 027664          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      +
T Consensus        79 ~   79 (144)
T d1mlda1          79 P   79 (144)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=95.91  E-value=0.017  Score=38.91  Aligned_cols=94  Identities=13%  Similarity=0.182  Sum_probs=56.0

Q ss_pred             EEEEEccchhHHHHHHHHHHC----CCeEEEEeCCccchHHHHHHcC---------CC-------EEEc--------CCC
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM----GVKVTVISTSPSKKSEAVERLG---------AD-------SFLV--------SRD   96 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~----g~~vi~~~~~~~~~~~~~~~~g---------~~-------~~~~--------~~~   96 (220)
                      +|.|.|-|-+|.++.+.+...    ..+|+.+-...+ .+.++..+.         .+       .+++        ..+
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~-~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGD-PKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSC-HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCC-hHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            578899999999999776432    336766665432 233222211         11       1111        111


Q ss_pred             HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664           97 QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus        97 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ++.+.+..-++|+|+||+|.-...+.+..++..|-+-|++..+
T Consensus        82 p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP  124 (173)
T d1obfo1          82 PAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAP  124 (173)
T ss_dssp             GGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSC
T ss_pred             HHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecC
Confidence            2222222238999999999876677888899888666666544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.89  E-value=0.0068  Score=37.94  Aligned_cols=35  Identities=26%  Similarity=0.312  Sum_probs=31.5

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      .++++|+|+|.+|.-+++.++.+|.+|.++.+.+.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            47899999999999999999999999999887753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.89  E-value=0.018  Score=41.64  Aligned_cols=74  Identities=19%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHH------H--HHHcCCCEEE-cCCCHHHHHHhcCCccEEEEc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSE------A--VERLGADSFL-VSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~------~--~~~~g~~~~~-~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      ++|||.|+ |-+|..++..+...|.+|+++++.......      .  ....+++.+. |..+.........+.+.++.+
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~~   83 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIST   83 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeeec
Confidence            67999998 999999999888889999999987543211      1  1122344332 333444444555578888888


Q ss_pred             CCCc
Q 027664          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      .+..
T Consensus        84 ~~~~   87 (307)
T d1qyca_          84 VGSL   87 (307)
T ss_dssp             CCGG
T ss_pred             cccc
Confidence            7754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.89  E-value=0.005  Score=42.03  Aligned_cols=42  Identities=21%  Similarity=0.288  Sum_probs=35.3

Q ss_pred             EEEEE-ccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc
Q 027664           45 HVGVV-GLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL   86 (220)
Q Consensus        45 ~vlI~-G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~   86 (220)
                      +|.|+ |+|.+|.++++.+...|.+|++..+++++.+.+.+++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i   44 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY   44 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            57788 5699999999999999999999999988776665543

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.84  E-value=0.012  Score=42.07  Aligned_cols=36  Identities=28%  Similarity=0.483  Sum_probs=32.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      -.|.+|+|.|.|.+|..+++++...|++|++++...
T Consensus        29 l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~   64 (242)
T d1v9la1          29 IEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN   64 (242)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccc
Confidence            478999999999999999999999999999888654

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=95.83  E-value=0.0094  Score=40.11  Aligned_cols=94  Identities=17%  Similarity=0.255  Sum_probs=56.9

Q ss_pred             EEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCC---------CEEE-------c--------CCCHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGA---------DSFL-------V--------SRDQDE   99 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~---------~~~~-------~--------~~~~~~   99 (220)
                      +|-|.|-|-+|..+.+.+... ..+++.+-... ..+.++..+..         +.-+       +        ..+++.
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~~-d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~   81 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDLT-DANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECSS-CHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCCC-CHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence            577889999999999777654 45887776654 33333222211         1001       1        111122


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       100 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +.+..-++|+|+||+|.-...+.+..++..+-+-|.+..+
T Consensus        82 i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap  121 (171)
T d3cmco1          82 LAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAP  121 (171)
T ss_dssp             CCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             ccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecc
Confidence            2222238999999999877778888888887655555443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.80  E-value=0.0083  Score=42.66  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      +..++|+|+|+|..|++++..+...|.+|+++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            44568999999999999999999999999999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.80  E-value=0.093  Score=35.10  Aligned_cols=94  Identities=23%  Similarity=0.227  Sum_probs=61.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC----EEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD----SFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      +|-|+|.|.+|...+.-+...|.+|++.++++++.+.+.+..+..    ..-...+.+.+.......+.++.++......
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT   82 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcchh
Confidence            377889999999999888888999999999999888886654321    1111222333333444666777777654322


Q ss_pred             ----HHHHhccccCCEEEEeCC
Q 027664          121 ----MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ----~~~~~~l~~~G~~v~~g~  138 (220)
                          ......+.++..++..+.
T Consensus        83 ~~~~~~~~~~~~~~~iii~~st  104 (178)
T d1pgja2          83 DSTIEQLKKVFEKGDILVDTGN  104 (178)
T ss_dssp             HHHHHHHHHHCCTTCEEEECCC
T ss_pred             hhhhhhhhhhccccceecccCc
Confidence                445556666666666543

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.80  E-value=0.013  Score=39.44  Aligned_cols=83  Identities=13%  Similarity=0.128  Sum_probs=57.2

Q ss_pred             EEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~  123 (220)
                      +|.|+|+|.+|...+..++.. +++++.+.....+..      ....+..+.+   .....+.+|+|+.|++.....+.+
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~------~~~~~~~~~~---~~~~~~~~D~Vvi~tp~~~h~~~a   75 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD------TKTPVFDVAD---VDKHADDVDVLFLCMGSATDIPEQ   75 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS------SSSCEEEGGG---GGGTTTTCSEEEECSCTTTHHHHH
T ss_pred             eEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc------cccccccchh---hhhhccccceEEEeCCCcccHHHH
Confidence            588999999999888877765 567776665543221      1111222222   222335799999999988778899


Q ss_pred             HhccccCCEEEEe
Q 027664          124 IGLLKSQGKLVLL  136 (220)
Q Consensus       124 ~~~l~~~G~~v~~  136 (220)
                      ..++..|-.++..
T Consensus        76 ~~aL~aG~~vv~~   88 (170)
T d1f06a1          76 APKFAQFACTVDT   88 (170)
T ss_dssp             HHHHTTTSEEECC
T ss_pred             HHHHHCCCcEEEe
Confidence            9999999887754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.79  E-value=0.0064  Score=44.96  Aligned_cols=36  Identities=33%  Similarity=0.364  Sum_probs=31.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      ...++|+|+|+|..|+.++..++..|.+|+++...+
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            456789999999999999998888899999998764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.024  Score=40.45  Aligned_cols=34  Identities=35%  Similarity=0.615  Sum_probs=29.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      .+.+|+|+|+|++|..+++.+...|. ++++++..
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            34789999999999999999999999 78777744

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.78  E-value=0.006  Score=43.30  Aligned_cols=36  Identities=31%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~   78 (220)
                      ++++||.|+ +++|.++++.+...|++|++++++++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            468899997 899999999888889999999988754

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0049  Score=43.38  Aligned_cols=97  Identities=14%  Similarity=0.126  Sum_probs=62.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC---CCEE-EcCCCHHHHHHhcCCccEEEEcC-
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---ADSF-LVSRDQDEMQAAMGTMDGIIDTV-  114 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g---~~~~-~~~~~~~~~~~~~~~~d~v~d~~-  114 (220)
                      ..++.+||-+||| .|..+..+++..+.+|++++.+++-.+.+.+.+.   ...+ +-..+...+....+.||+|+..- 
T Consensus        58 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~  136 (222)
T d2ex4a1          58 KTGTSCALDCGAG-IGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  136 (222)
T ss_dssp             CCCCSEEEEETCT-TTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCCCEEEEeccC-CCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            4677899999997 4887888877767799999999887766654432   2111 11112111111123799987532 


Q ss_pred             ----CCc---ccHHHHHhccccCCEEEEeC
Q 027664          115 ----SAV---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       115 ----g~~---~~~~~~~~~l~~~G~~v~~g  137 (220)
                          ..+   ..+..+.+.|+++|.++...
T Consensus       137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence                222   24667888999999998764

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.70  E-value=0.015  Score=40.23  Aligned_cols=71  Identities=20%  Similarity=0.205  Sum_probs=47.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH---------------HHhcCCccE
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM---------------QAAMGTMDG  109 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------------~~~~~~~d~  109 (220)
                      +|.|+|.|-+|+.++..+...|.+|++.+.++++.+.+.+  |-.........+.+               .+.....|+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~--g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~   79 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQ--GKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDV   79 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT--TCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSE
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcc--cCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCE
Confidence            5789999999999988888889999999999877766632  22211111111211               111226799


Q ss_pred             EEEcCCCc
Q 027664          110 IIDTVSAV  117 (220)
Q Consensus       110 v~d~~g~~  117 (220)
                      +|-|++.+
T Consensus        80 i~i~VpTP   87 (202)
T d1mv8a2          80 SFICVGTP   87 (202)
T ss_dssp             EEECCCCC
T ss_pred             EEEecCcc
Confidence            99999875

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.69  E-value=0.13  Score=38.00  Aligned_cols=101  Identities=14%  Similarity=0.175  Sum_probs=68.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCccchHHHHHHc---CCCEEEcCCCHHHHHHhcCCccEEEEcCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERL---GADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~-~~g~-~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      +..+++.|+|+|..+...++.+. .+.. +|.+..+++++.+.+...+   +.....+  ..    +...+.|+|+-|+.
T Consensus       123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~--~~----~a~~~aDiV~taT~  196 (320)
T d1omoa_         123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQ--PA----EEASRCDVLVTTTP  196 (320)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEEC--CH----HHHTSSSEEEECCC
T ss_pred             CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccc--hh----hhhccccEEEEecc
Confidence            55678899999999988887655 4677 8999999988776665543   3333322  22    22347899999887


Q ss_pred             CcccHHHHHhccccCCEEEEeCCCCCC-CCCCch
Q 027664          116 AVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAF  148 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~  148 (220)
                      ..+.+ .-.+.+++|-++..+|..... .+++..
T Consensus       197 s~~P~-~~~~~l~~G~hv~~iGs~~p~~~Eld~~  229 (320)
T d1omoa_         197 SRKPV-VKAEWVEEGTHINAIGADGPGKQELDVE  229 (320)
T ss_dssp             CSSCC-BCGGGCCTTCEEEECSCCSTTCCCBCHH
T ss_pred             Ccccc-cchhhcCCCCeEeecCCccccccccCHH
Confidence            65432 123468999999999876532 344444

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=95.69  E-value=0.01  Score=42.76  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=62.5

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcC--CCHHHHHHhcCCccEEEEcCCC--
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS--RDQDEMQAAMGTMDGIIDTVSA--  116 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~d~v~d~~g~--  116 (220)
                      .++.+||=+||| .|..+..++.....+|+.++.++...+.+.+.+.....++.  .+.+...-..+.||+|+-.-.-  
T Consensus        92 ~~~~~vLD~GcG-~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h  170 (254)
T d1xtpa_          92 HGTSRALDCGAG-IGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIY  170 (254)
T ss_dssp             CCCSEEEEETCT-TTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCCeEEEeccc-CChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeeccccc
Confidence            567889999997 48888888877666999999998877777655543212211  1211111112369998753321  


Q ss_pred             ---c---ccHHHHHhccccCCEEEEeC
Q 027664          117 ---V---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       117 ---~---~~~~~~~~~l~~~G~~v~~g  137 (220)
                         +   ..+..+.+.|+++|.++...
T Consensus       171 l~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         171 LTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence               1   23567888999999998754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.68  E-value=0.0042  Score=45.40  Aligned_cols=33  Identities=15%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      .|+|+|+|+.|++++..++..|.+|+++.+.++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            489999999999999999999999999988753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.67  E-value=0.0095  Score=37.67  Aligned_cols=36  Identities=17%  Similarity=0.157  Sum_probs=32.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      +.+++++|+|+|.+|+-++..+...|.+|+++.+.+
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            456889999999999999999999999999988765

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=95.66  E-value=0.015  Score=42.36  Aligned_cols=100  Identities=23%  Similarity=0.201  Sum_probs=64.8

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHHH---cCCCEEEcCCCHHHHHHhcCCccEEE
Q 027664           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGADSFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~d~v~  111 (220)
                      ...+.+..+||=+|+| .|..+..+++..  +.+|++++.++...+.+.+.   .+.+.-+...+...+ ...+.||+|+
T Consensus        22 ~~~~~~~~~ILDiGcG-~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~v~   99 (281)
T d2gh1a1          22 VWKITKPVHIVDYGCG-YGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDIAI   99 (281)
T ss_dssp             TSCCCSCCEEEEETCT-TTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEEEE
T ss_pred             HhccCCcCEEEEecCc-CCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceEEE
Confidence            3346778899999997 488888888875  46899999998766655433   233322222221111 1234799987


Q ss_pred             EcCC-----Cc-ccHHHHHhccccCCEEEEeCC
Q 027664          112 DTVS-----AV-HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       112 d~~g-----~~-~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      -.-.     ++ ..++.+.+.|++||.++....
T Consensus       100 ~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1         100 CHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             EESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence            4422     21 246788999999999987653

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=95.64  E-value=0.021  Score=40.05  Aligned_cols=89  Identities=12%  Similarity=0.119  Sum_probs=58.5

Q ss_pred             EEEEEccchhHHH-HHHHHHHC-CCeEEEEe-CCccchHHHHHHcCCC--EEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           45 HVGVVGLGGLGHV-AVKFAKAM-GVKVTVIS-TSPSKKSEAVERLGAD--SFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~g~~G~~-~~~la~~~-g~~vi~~~-~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      +|-|+|+|.+|.. .+...+.. +.+++.++ ++.++.+.+.+.++.+  .+..+.+.+++.+ ...+|+|+-|+.....
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~-~~~iD~V~I~tp~~~H  113 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAK-DPKIDAVYIILPNSLH  113 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGG-CTTCCEEEECSCGGGH
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcc-cccceeeeeccchhhh
Confidence            5788999999863 44444444 66888555 4566677777777753  2333444332211 1279999999998877


Q ss_pred             HHHHHhccccCCEEE
Q 027664          120 LMPLIGLLKSQGKLV  134 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v  134 (220)
                      .+.+..++..|-.+.
T Consensus       114 ~~~~~~al~~gk~v~  128 (221)
T d1h6da1         114 AEFAIRAFKAGKHVM  128 (221)
T ss_dssp             HHHHHHHHHTTCEEE
T ss_pred             hhHHHHhhhcchhhh
Confidence            888888887764443

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.63  E-value=0.0034  Score=45.54  Aligned_cols=96  Identities=20%  Similarity=0.146  Sum_probs=59.1

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC---EEEcCCCHHHHHHhcCCccEEE-
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAAMGTMDGII-  111 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~---~~~~~~~~~~~~~~~~~~d~v~-  111 (220)
                      .+++|++||-.||| +|..++.+|+.-+++|++++.++...+.+.+.   .|.+   .+++.+..+...  .+.+|.|+ 
T Consensus       104 ~~~~g~~VlD~~aG-~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--~~~~D~Ii~  180 (260)
T d2frna1         104 VAKPDELVVDMFAG-IGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILM  180 (260)
T ss_dssp             HCCTTCEEEETTCT-TTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEE
T ss_pred             hcCCccEEEECcce-EcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--CCCCCEEEE
Confidence            36899999998875 35556667776446999999998866555332   3432   223322111100  12588665 


Q ss_pred             EcC-CCcccHHHHHhccccCCEEEEeC
Q 027664          112 DTV-SAVHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       112 d~~-g~~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      +-- .....+..+++.+++||.+....
T Consensus       181 ~~p~~~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         181 GYVVRTHEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             CCCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCchHHHHHHHHhhcCCCCEEEEEe
Confidence            322 22345778899999999886543

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.62  E-value=0.026  Score=38.58  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=26.6

Q ss_pred             CccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664          106 TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       106 ~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ++|+|+||+|.-...+.+..++..|-+-|++..+
T Consensus       103 gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP  136 (190)
T d1k3ta1         103 GVEYVIESTGLFTAKAAAEGHLRGGARKVVISAP  136 (190)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             CCcEEEEecccccccccchhhcccCcceeeeccC
Confidence            8999999999876677888888887655555443

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.019  Score=41.98  Aligned_cols=96  Identities=21%  Similarity=0.165  Sum_probs=57.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcC--------C-CEEEcCCCHHHHHHhcCCccEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG--------A-DSFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g--------~-~~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      ...++|||+|+|. |..+-.+++..+. +|+++.-.++=.+.+.+-+.        . -.++..+....+++..+.+|+|
T Consensus        77 ~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          77 PNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             cCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            4568899998764 5556677777666 88888877654433322221        1 1122111134454444589998


Q ss_pred             E-EcCCC---------cccHHHHHhccccCCEEEEeC
Q 027664          111 I-DTVSA---------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 ~-d~~g~---------~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      + |....         .+.++.+.+.|+++|.++.-.
T Consensus       156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            6 44321         123677888999999998643

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=95.58  E-value=0.015  Score=39.09  Aligned_cols=94  Identities=20%  Similarity=0.191  Sum_probs=55.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCC---CeEEEEeCCccchHHHHHHcCC---------CEE--------EcC--------CC
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMG---VKVTVISTSPSKKSEAVERLGA---------DSF--------LVS--------RD   96 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g---~~vi~~~~~~~~~~~~~~~~g~---------~~~--------~~~--------~~   96 (220)
                      +|.|.|-|-+|.++.+.+....   .+++.+-... ..+.++..+..         +..        +|.        .+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~   80 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN   80 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT-CHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC-CHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCC
Confidence            5788999999999998765432   4677666654 33333221111         111        111        01


Q ss_pred             HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCC
Q 027664           97 QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus        97 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +..+.+...++|+|+||+|.-...+.+..++..|-+-|++..+
T Consensus        81 p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP  123 (172)
T d1rm4a1          81 PVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAP  123 (172)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSC
T ss_pred             hHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeecc
Confidence            1122111128999999999866677888888887644444443

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.55  E-value=0.0094  Score=44.34  Aligned_cols=35  Identities=23%  Similarity=0.263  Sum_probs=31.2

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      .++|+|+|||..|+.++..+...|.+|.++..++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            57899999999999999888888999999988763

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=95.54  E-value=0.0091  Score=42.80  Aligned_cols=96  Identities=17%  Similarity=0.127  Sum_probs=58.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC-EE-EcCCCH-HHHHHhcCCccEEEEc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD-SF-LVSRDQ-DEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~-~~-~~~~~~-~~~~~~~~~~d~v~d~  113 (220)
                      ++++++||=+|||. |..+..+++.-..+|++++.+++..+.+.+.   .+.. .+ +-..+. .......+.||+|+-.
T Consensus        22 ~~~~~~VLDlGCG~-G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK-GGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             CCTTCEEEEETCTT-TTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence            57899999999975 6666777776445899999999877766543   2321 11 111111 0000112369998753


Q ss_pred             CCCc----------ccHHHHHhccccCCEEEEe
Q 027664          114 VSAV----------HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       114 ~g~~----------~~~~~~~~~l~~~G~~v~~  136 (220)
                      ..-.          ..+..+.+.|++||.++..
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            3221          1345567899999998864

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=95.53  E-value=0.028  Score=41.62  Aligned_cols=94  Identities=17%  Similarity=0.152  Sum_probs=58.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcC-----C-----CEEEcCCCHHHHHHhcCCccE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG-----A-----DSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g-----~-----~~~~~~~~~~~~~~~~~~~d~  109 (220)
                      ...++|||+|+|. |..+-.+++.... +|.++.-.++-.+.+.+-+.     .     -.++..+-.+.+++..+.||+
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            4568899999864 6666677777655 89999888764444433221     1     122222223445554458999


Q ss_pred             EE-Ec---CCCc---------ccHHHHHhccccCCEEEE
Q 027664          110 II-DT---VSAV---------HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus       110 v~-d~---~g~~---------~~~~~~~~~l~~~G~~v~  135 (220)
                      || |.   .+..         +.++.+.++|+++|.++.
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~  193 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM  193 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence            86 44   2211         135678899999999885

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.53  E-value=0.033  Score=40.45  Aligned_cols=94  Identities=16%  Similarity=0.131  Sum_probs=54.5

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCC---------------EEEcCCCHHHHHHhcC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---------------SFLVSRDQDEMQAAMG  105 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~---------------~~~~~~~~~~~~~~~~  105 (220)
                      .+.++|||+|+|. |..+-.++++-..+|.++.-+++=.+.+.+-++..               .++..+....+++ .+
T Consensus        71 ~~p~~vLiiG~G~-G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~  148 (276)
T d1mjfa_          71 PKPKRVLVIGGGD-GGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  148 (276)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCceEEEecCCc-hHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cC
Confidence            5568999998763 44445555643348888877765443332222211               2222222234433 45


Q ss_pred             CccEEE-EcCCCc---------ccHHHHHhccccCCEEEEe
Q 027664          106 TMDGII-DTVSAV---------HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       106 ~~d~v~-d~~g~~---------~~~~~~~~~l~~~G~~v~~  136 (220)
                      ++|+|| |+....         +.++.+.++|+++|.++.-
T Consensus       149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            899986 444321         2367788999999998864

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.48  E-value=0.023  Score=35.57  Aligned_cols=86  Identities=17%  Similarity=0.220  Sum_probs=55.3

Q ss_pred             CCCEEEEEccchh--H---------HHHHHHHHHCCCeEEEEeCCccchHHHHHHcC-CCEEE-cCCCHHHHHHhcC--C
Q 027664           42 PGMHVGVVGLGGL--G---------HVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADSFL-VSRDQDEMQAAMG--T  106 (220)
Q Consensus        42 ~~~~vlI~G~g~~--G---------~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g-~~~~~-~~~~~~~~~~~~~--~  106 (220)
                      ..++|||+|+|+.  |         ..+++.+|..|.+++.+..+++...   .++. ++.++ .+-..+.+.++..  +
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVs---td~d~aD~lYfeplt~e~v~~Ii~~E~   79 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVS---TDYDTSDRLYFEPVTLEDVLEIVRIEK   79 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSST---TSTTSSSEEECCCCSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhh---cChhhcCceEEccCCHHHHHHHHHHhC
Confidence            3578999998752  3         4455566778999999999987553   2233 35553 3334555666543  8


Q ss_pred             ccEEEEcCCCcccHHHHHhccccCC
Q 027664          107 MDGIIDTVSAVHPLMPLIGLLKSQG  131 (220)
Q Consensus       107 ~d~v~d~~g~~~~~~~~~~~l~~~G  131 (220)
                      +|.|+-..|++..+..+.. |.+.|
T Consensus        80 p~~ii~~~GGQtalnla~~-L~~~g  103 (121)
T d1a9xa4          80 PKGVIVQYGGQTPLKLARA-LEAAG  103 (121)
T ss_dssp             CSEEECSSSTHHHHTTHHH-HHHTT
T ss_pred             CCEEEeehhhhhHHHHHHH-HHHcC
Confidence            9999999998854444443 33444

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.46  E-value=0.031  Score=41.29  Aligned_cols=95  Identities=21%  Similarity=0.188  Sum_probs=57.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHH-cCC--C-------EEEcCCCHHHHHHhcCCccE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVER-LGA--D-------SFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~g~--~-------~~~~~~~~~~~~~~~~~~d~  109 (220)
                      ...++|||+|+|. |..+-.++++.+. +|.++.-.++=.+ ++++ +..  .       .++..+..+.+++..+.||+
T Consensus       105 ~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~-~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDv  182 (312)
T d2b2ca1         105 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVID-VAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV  182 (312)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHH-HHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred             CCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHH-HHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCE
Confidence            4567899999764 5556677787776 7888887775444 3344 321  0       11111112445554458999


Q ss_pred             EEEcCCC----------cccHHHHHhccccCCEEEEeC
Q 027664          110 IIDTVSA----------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       110 v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      ||--+..          .+.++.+.++|+++|.++.-+
T Consensus       183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            9732211          123567888999999998764

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.46  E-value=0.021  Score=37.46  Aligned_cols=86  Identities=15%  Similarity=0.125  Sum_probs=52.4

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLI  124 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~  124 (220)
                      +|-|+|.|.+|...+.-+...|.++++..+...+..... ..+....-+      ..+.....|+||-|+..+.....+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~------~~e~~~~~diIi~~v~~~~~~~~~~   74 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIER-ARTVGVTET------SEEDVYSCPVVISAVTPGVALGAAR   74 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHH-HHHHTCEEC------CHHHHHTSSEEEECSCGGGHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHh-hhccccccc------HHHHHhhcCeEEEEecCchHHHHHH
Confidence            577899999999999988888999988887765544432 223322211      1223346788888887764433333


Q ss_pred             hcccc-CCEEEEeC
Q 027664          125 GLLKS-QGKLVLLG  137 (220)
Q Consensus       125 ~~l~~-~G~~v~~g  137 (220)
                      ..... +..++.++
T Consensus        75 ~~~~~~~~~~id~s   88 (152)
T d1i36a2          75 RAGRHVRGIYVDIN   88 (152)
T ss_dssp             HHHTTCCSEEEECS
T ss_pred             hhcccCCceeeccC
Confidence            32222 34445443

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.38  E-value=0.032  Score=36.45  Aligned_cols=73  Identities=19%  Similarity=0.167  Sum_probs=45.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcC-------CCEEEcCCCHHHHHHhcCCccEEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLG-------ADSFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~~~~~~~~d~v~  111 (220)
                      ..+.+|.|+|+|.+|..++..+...|.  +++.++..+++.+-...++.       ....+...+.    +...+.|+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~----~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY----DDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG----GGTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH----HHhccceeEE
Confidence            456789999999999999887776664  78888887765332222221       1111111111    1234678888


Q ss_pred             EcCCCc
Q 027664          112 DTVSAV  117 (220)
Q Consensus       112 d~~g~~  117 (220)
                      -++|.+
T Consensus        80 itag~~   85 (148)
T d1ldna1          80 ICAGAN   85 (148)
T ss_dssp             ECCSCC
T ss_pred             Eecccc
Confidence            888764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.38  E-value=0.011  Score=42.54  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=29.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCCcc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~   77 (220)
                      .|+|+|+|+.|++++..++..|. +|.++.+.+.
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            58999999999999999999997 8888887654

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=95.38  E-value=0.0029  Score=41.81  Aligned_cols=82  Identities=15%  Similarity=0.047  Sum_probs=51.2

Q ss_pred             EEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhc
Q 027664           47 GVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGL  126 (220)
Q Consensus        47 lI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~  126 (220)
                      -++|+|.+|...++.++..+..+.+..++.++.+.+.+..+.. ..+..      +.....|+||=|+..+ .+...+..
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~-~~~~~------~~~~~~DiVil~v~d~-~i~~v~~~   74 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGK-AATLE------KHPELNGVVFVIVPDR-YIKTVANH   74 (153)
T ss_dssp             EEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCC-CCSSC------CCCC---CEEECSCTT-THHHHHTT
T ss_pred             EEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccccc-ccchh------hhhccCcEEEEeccch-hhhHHHhh
Confidence            3679999999988866553333456788888888887666543 22211      2234679999999876 57888888


Q ss_pred             cccCCEE-EEe
Q 027664          127 LKSQGKL-VLL  136 (220)
Q Consensus       127 l~~~G~~-v~~  136 (220)
                      +...|.+ +.+
T Consensus        75 l~~~~~ivi~~   85 (153)
T d2i76a2          75 LNLGDAVLVHC   85 (153)
T ss_dssp             TCCSSCCEEEC
T ss_pred             hcccceeeeec
Confidence            8655544 444

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.37  E-value=0.051  Score=39.86  Aligned_cols=72  Identities=18%  Similarity=0.136  Sum_probs=46.9

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc--hHHHHHHcCCC-----EEEcCCCHHHHHHhcC--CccEEEEc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK--KSEAVERLGAD-----SFLVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~--~~~~~~~~g~~-----~~~~~~~~~~~~~~~~--~~d~v~d~  113 (220)
                      ++|||.|+ |-+|..++..+...|.+|+++++....  ...+ +.++.+     .-.|-.+.+.+.+...  ..++++.+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRL-RELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHH-HHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHH-HHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence            57999997 999999998888789999999876532  2222 334321     1134445555544332  56777777


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      ...
T Consensus        80 a~~   82 (321)
T d1rpna_          80 AAQ   82 (321)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            654

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.36  E-value=0.16  Score=35.55  Aligned_cols=98  Identities=17%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHH---HcCCCE---EEcCCCHHHHHHh------cCC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVE---RLGADS---FLVSRDQDEMQAA------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~---~~g~~~---~~~~~~~~~~~~~------~~~  106 (220)
                      ...++||-+|.+ +|..++.+|+.+  +.+++.+..+++....+.+   +.|...   ++.....+.+.++      .+.
T Consensus        58 ~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          58 INAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             cCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            456889999975 478888888876  4599999988875444432   345421   2222223444444      236


Q ss_pred             ccEEE-EcCCCc--ccHHHHHhccccCCEEEEeCCC
Q 027664          107 MDGII-DTVSAV--HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~v~-d~~g~~--~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ||+|| |+--..  ..++.+++.+++||.++.=...
T Consensus       137 fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         137 YDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             BSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             eeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence            99997 443322  2477899999999999876543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=95.32  E-value=0.018  Score=41.23  Aligned_cols=97  Identities=23%  Similarity=0.178  Sum_probs=58.7

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHH---HHcCC-CEE-EcCCCHHHHHHhcCCccEEEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAV---ERLGA-DSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~---~~~g~-~~~-~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      .+....+||-+|+| .|..+..+++.. +.++++++.++ ..+.+.   ...+. +.+ +...+  .......++|+|+-
T Consensus        77 d~~~~~~VLDvGcG-~G~~~~~la~~~p~~~~~~~D~~~-~~~~a~~~~~~~~~~~rv~~~~~D--~~~~~~~~~D~v~~  152 (253)
T d1tw3a2          77 DWTNVRHVLDVGGG-KGGFAAAIARRAPHVSATVLEMAG-TVDTARSYLKDEGLSDRVDVVEGD--FFEPLPRKADAIIL  152 (253)
T ss_dssp             CCTTCSEEEEETCT-TSHHHHHHHHHCTTCEEEEEECTT-HHHHHHHHHHHTTCTTTEEEEECC--TTSCCSSCEEEEEE
T ss_pred             CCccCCEEEEeCCC-CCHHHHHHHHhcceeEEEEccCHH-HHHHHHHHHHHhhcccchhhcccc--chhhcccchhheee
Confidence            36778899999987 488888999886 56888888643 333322   22332 111 11111  11112247898873


Q ss_pred             cCC-----Cc---ccHHHHHhccccCCEEEEeCCC
Q 027664          113 TVS-----AV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       113 ~~g-----~~---~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ...     .+   ..+..+.+.|++||+++.....
T Consensus       153 ~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            321     11   2367788999999999987543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.28  E-value=0.077  Score=39.49  Aligned_cols=74  Identities=18%  Similarity=0.100  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchH--HHHHHcCCCEEE-cCCC-HHHHHHhcCCccEEEEcCC
Q 027664           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS--EAVERLGADSFL-VSRD-QDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~--~~~~~~g~~~~~-~~~~-~~~~~~~~~~~d~v~d~~g  115 (220)
                      +.++|+|.|+ |.+|..++..+...|.+|++++++.++..  .+...-+++.+. |..+ .+.+.....+.|.++....
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~   80 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT   80 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecc
Confidence            4578999997 99999999988888999999998765432  221112444332 3233 3445666678888776544

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.26  E-value=0.014  Score=41.76  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=29.4

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      +.|||.|+ +++|.++++.+...|++|++++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            45788997 89999999998899999999998754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.014  Score=43.08  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      ++..+|+|+|+|..|+.++..+...|.+|++...++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            455779999999999999999999999999988664

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.24  E-value=0.015  Score=39.96  Aligned_cols=94  Identities=17%  Similarity=0.126  Sum_probs=57.2

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHH---HcCCC---EEEcCCCHHHHHHhc-CCccEEE
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAAM-GTMDGII  111 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~~~~-~~~d~v~  111 (220)
                      ...++++||-+|+|. |..++.+++ .+.+|++++.++...+.+.+   ..+.+   .-+...+.  .+... +.||+|+
T Consensus        49 ~~~~~~~VLDiGcG~-G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~--~~~~~~~~fD~Ii  124 (194)
T d1dusa_          49 VVDKDDDILDLGCGY-GVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL--YENVKDRKYNKII  124 (194)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST--TTTCTTSCEEEEE
T ss_pred             CcCCCCeEEEEeecC-ChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcch--hhhhccCCceEEE
Confidence            468899999999863 666666665 46799999999876555533   22321   11111111  11122 3799998


Q ss_pred             EcCC---Cc----ccHHHHHhccccCCEEEEe
Q 027664          112 DTVS---AV----HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       112 d~~g---~~----~~~~~~~~~l~~~G~~v~~  136 (220)
                      -...   ..    ..++.+.+.|+++|+++..
T Consensus       125 ~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         125 TNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             ECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            4322   11    1356677899999998654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.21  E-value=0.038  Score=40.41  Aligned_cols=95  Identities=14%  Similarity=0.183  Sum_probs=58.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcC---------C-CEEEcCCCHHHHHHhcC-Ccc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG---------A-DSFLVSRDQDEMQAAMG-TMD  108 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g---------~-~~~~~~~~~~~~~~~~~-~~d  108 (220)
                      ..-++|||+|+|. |..+-.++++.+. +|..+.-.++=.+.+ +++-         . -.++..+..+.+++..+ .||
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~-~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVS-KQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHH-HHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHH-HHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence            4457899999764 5556677887776 788888877544333 3321         1 11222222344555444 799


Q ss_pred             EEE-EcCCC---------cccHHHHHhccccCCEEEEeC
Q 027664          109 GII-DTVSA---------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       109 ~v~-d~~g~---------~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      +|| |+...         .+.++.+.++|+++|.++.-.
T Consensus       157 vIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         157 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            876 44432         123677889999999998754

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.20  E-value=0.012  Score=43.39  Aligned_cols=96  Identities=17%  Similarity=0.138  Sum_probs=56.5

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCC---------CEEEcCCCHHHHHHhcCCccEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA---------DSFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~d~v  110 (220)
                      ...++|||+|+|. |..+-.++++.+. +|+++.-.++-.+.+.+-++.         -.++..+..+.+++..+.||+|
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            3458999998764 5556677777765 788888887544433222211         0122111123344434479998


Q ss_pred             E-EcCCC----------cccHHHHHhccccCCEEEEeC
Q 027664          111 I-DTVSA----------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 ~-d~~g~----------~~~~~~~~~~l~~~G~~v~~g  137 (220)
                      | |+...          .+.++.+.++|+++|.++.-.
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            6 43221          123577889999999998753

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.17  E-value=0.011  Score=42.28  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCccc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~   78 (220)
                      |+|+|+|+.|++++..+...|.+|.++...+.-
T Consensus         7 ViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           7 NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            889999999999998888889999999988653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=95.17  E-value=0.011  Score=41.97  Aligned_cols=32  Identities=28%  Similarity=0.277  Sum_probs=28.7

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      |+|+|+|+.|++++..+...|.+|+++...+.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            78999999999999888888999999998754

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.17  E-value=0.073  Score=37.55  Aligned_cols=122  Identities=16%  Similarity=0.160  Sum_probs=65.7

Q ss_pred             HHhhcCCCCCCEEEEEccchhHHHHHHHH-HHCCCeEEEEeCCcc-----------chHHHHHHcCCCEEEcCCCH--HH
Q 027664           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFA-KAMGVKVTVISTSPS-----------KKSEAVERLGADSFLVSRDQ--DE   99 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~la-~~~g~~vi~~~~~~~-----------~~~~~~~~~g~~~~~~~~~~--~~   99 (220)
                      +...+.--+|.+|.|.|.|.+|..+++.+ +..|++|+.++.+..           .+..+.+..+..  ..+...  -.
T Consensus        22 ~~~~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~--~~~~~~~~~~   99 (234)
T d1b26a1          22 MDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTV--VTYPKGERIT   99 (234)
T ss_dssp             HHHTTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCS--TTCSSCEEEC
T ss_pred             HHHcCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcce--eccccceeec
Confidence            44443324689999999999999999877 578999998875432           122222222210  111110  01


Q ss_pred             HHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCCCCCCCchh-hhcCCeEEEEE
Q 027664          100 MQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP-LLTGRKIVGGS  160 (220)
Q Consensus       100 ~~~~~-~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~  160 (220)
                      ..++. -..|+.+=|+.+...-......++..  + .++....+.+..... +..+++.+..-
T Consensus       100 ~~~~~~~~~DI~~PcA~~~~I~~~~a~~l~~~--~-I~e~AN~p~t~~a~~~L~~rgI~~~PD  159 (234)
T d1b26a1         100 NEELLELDVDILVPAALEGAIHAGNAERIKAK--A-VVEGANGPTTPEADEILSRRGILVVPD  159 (234)
T ss_dssp             HHHHHTSCCSEEEECSCTTCBCHHHHTTCCCS--E-EECCSSSCBCHHHHHHHHHTTCEEECH
T ss_pred             cccccccccceeecchhcccccHHHHHHhhhc--e-EeecCCCCCCHHHHHHHHHCCeEEech
Confidence            11222 37899988887664445555555532  2 223333333322222 34555655543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.011  Score=39.95  Aligned_cols=30  Identities=23%  Similarity=0.441  Sum_probs=27.3

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      |+|+|+|+.|+.++..+...|.+|.++.+.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999999988753

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.14  E-value=0.014  Score=43.69  Aligned_cols=98  Identities=21%  Similarity=0.109  Sum_probs=52.2

Q ss_pred             HHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHH---HHHcCC--CEEEcCCCHHHHHHhcCCc
Q 027664           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA---VERLGA--DSFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~---~~~~g~--~~~~~~~~~~~~~~~~~~~  107 (220)
                      +.+...+.+|++||-+|+|. |..+..+++ .|+ +|++++.++. ...+   .+..+.  ...+...+...+....+.+
T Consensus        30 I~~~~~~~~~~~VLDlGcGt-G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~  106 (328)
T d1g6q1_          30 IIQNKDLFKDKIVLDVGCGT-GILSMFAAK-HGAKHVIGVDMSSI-IEMAKELVELNGFSDKITLLRGKLEDVHLPFPKV  106 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTT-SHHHHHHHH-TCCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCE
T ss_pred             HHhccccCCcCEEEEeCCCC-CHHHHHHHH-hCCCEEEEEeCCHH-HHHHHHHHHHhCccccceEEEeehhhccCcccce
Confidence            43333346899999999873 766655555 577 8999987752 2222   223332  1112112211111112378


Q ss_pred             cEEEEc-CCC----ccc----HHHHHhccccCCEEE
Q 027664          108 DGIIDT-VSA----VHP----LMPLIGLLKSQGKLV  134 (220)
Q Consensus       108 d~v~d~-~g~----~~~----~~~~~~~l~~~G~~v  134 (220)
                      |+|+-. .+.    ...    +...-+.|+++|+++
T Consensus       107 D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         107 DIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            988742 221    112    233347899999885

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.04  E-value=0.016  Score=38.74  Aligned_cols=34  Identities=38%  Similarity=0.493  Sum_probs=28.6

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSP   76 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~   76 (220)
                      |++|+|+|+|..|+.++..++..+  .+|+++...+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            789999999999999998887766  4788887665

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.0068  Score=41.39  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=30.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      ++..|+|+|+|+.|+.++..+...|.+|+++.+..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            45679999999999999999999999999887543

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=94.97  E-value=0.013  Score=42.51  Aligned_cols=60  Identities=10%  Similarity=0.168  Sum_probs=40.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcC--CccEEEEcCCC
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~d~v~d~~g~  116 (220)
                      +|||.|+ |-+|..++..+...|. ++++......       +    ..|..+.+.+++...  ++|+||+|++.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~-------~----~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE-------F----CGDFSNPKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS-------S----CCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc-------c----cCcCCCHHHHHHHHHHcCCCEEEEeccc
Confidence            5899997 9999999987777664 5555544321       1    123445555555443  78999999874

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.96  E-value=0.28  Score=33.60  Aligned_cols=95  Identities=19%  Similarity=0.106  Sum_probs=61.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHH---HcCCC-EEEcCCCHHHHHH-hcC-CccEEEEcC
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVE---RLGAD-SFLVSRDQDEMQA-AMG-TMDGIIDTV  114 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~---~~g~~-~~~~~~~~~~~~~-~~~-~~d~v~d~~  114 (220)
                      .+..||-+|+|. |..++.+|+.. +.++++++.+......+.+   ..+.+ ..+-..+...+.. +.. .+|.|+-..
T Consensus        29 ~~PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f  107 (204)
T d2fcaa1          29 DNPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  107 (204)
T ss_dssp             CCCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence            345667789874 88888999875 5699999999876655533   44553 2233344333333 333 688776544


Q ss_pred             CCc--------------ccHHHHHhccccCCEEEEeC
Q 027664          115 SAV--------------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       115 g~~--------------~~~~~~~~~l~~~G~~v~~g  137 (220)
                      ..+              ..+..+.+.|++||.+....
T Consensus       108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            432              24567788999999998763

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.91  E-value=0.016  Score=40.10  Aligned_cols=67  Identities=13%  Similarity=0.026  Sum_probs=42.2

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHH-HHhcCCccEEEEcCCCc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGADSFLVSRDQDEM-QAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~d~v~d~~g~~  117 (220)
                      ++|||.|+ |-+|..++..+...|.  +|++..+++...      . ...-.+..+...+ ....+..|.|+.|+|..
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~------~-~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------H-PRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------C-TTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh------c-ccccccccchhhhhhccccchheeeeeeeee
Confidence            78999998 9999999988877775  666666553211      0 1111122232222 22334799999999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.89  E-value=0.013  Score=40.84  Aligned_cols=31  Identities=35%  Similarity=0.362  Sum_probs=28.2

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      |+|+|+|+.|+.++..+...|.+|+++...+
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.75  E-value=0.014  Score=41.35  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=28.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~   76 (220)
                      +|+|+|+|+.|+.++..++..|. +|+++...+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            48999999999999998888997 699888764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.66  E-value=0.017  Score=38.80  Aligned_cols=32  Identities=22%  Similarity=0.103  Sum_probs=26.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEe
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIS   73 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~   73 (220)
                      .+++|+|+|+|++|.-++..++..|.++.++.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence            46899999999999999999999998644443

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.12  Score=36.09  Aligned_cols=99  Identities=16%  Similarity=0.115  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHHH---HcCCCE-E-EcCCC-HHHHHHh-----cCC
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVE---RLGADS-F-LVSRD-QDEMQAA-----MGT  106 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~~---~~g~~~-~-~~~~~-~~~~~~~-----~~~  106 (220)
                      ....++||-+|.+ .|..++.+|+.+  +.+++.++.+++..+.+.+   ..|... + +-..+ .+.+.+.     .+.
T Consensus        57 ~~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~  135 (219)
T d2avda1          57 LIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT  135 (219)
T ss_dssp             HTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             ccCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCC
Confidence            3567899999975 477788888876  4599999988876444433   235321 1 11222 2334333     126


Q ss_pred             ccEEEEcCCCc---ccHHHHHhccccCCEEEEeCCC
Q 027664          107 MDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~v~d~~g~~---~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      ||+||--....   ..++.+++.|++||.++.-...
T Consensus       136 fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         136 FDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             EEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             ccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            99997443332   2467899999999999886554

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.61  E-value=0.075  Score=33.54  Aligned_cols=90  Identities=13%  Similarity=0.144  Sum_probs=58.6

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEE-cCCCHHHHHHhc-CCccEEEEcCCCccc--
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVHP--  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~d~v~d~~g~~~~--  119 (220)
                      ++++|.|.|.+|..+++.++  |.++++++.++++.+.+ +..|...+. |..+++.+++.. +.++.++-+...+..  
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~-~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~   77 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKV-LRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI   77 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHH-HHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHH-HhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH
Confidence            35889999999998888765  44677788887776666 566765443 444556566543 478999988876532  


Q ss_pred             -HHHHHhccccCCEEEEe
Q 027664          120 -LMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       120 -~~~~~~~l~~~G~~v~~  136 (220)
                       .-...+.+.+..+++..
T Consensus        78 ~~~~~~r~~~~~~~iia~   95 (129)
T d2fy8a1          78 HCILGIRKIDESVRIIAE   95 (129)
T ss_dssp             HHHHHHHHHCSSSCEEEE
T ss_pred             HHHHHHHHHCCCceEEEE
Confidence             12233455556555554

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.59  E-value=0.073  Score=39.52  Aligned_cols=98  Identities=27%  Similarity=0.244  Sum_probs=59.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHH---HcCCC---EEEcCCCHHHHHHh---cCCccE
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAA---MGTMDG  109 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~---~~g~~---~~~~~~~~~~~~~~---~~~~d~  109 (220)
                      +++|++||=.++|. |..++.+++. |+ +|+.++.++...+.+.+   ..|..   .++..+-.+.+..+   .+.||+
T Consensus       143 ~~~g~~VLDl~~g~-G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~  220 (324)
T d2as0a2         143 VQPGDRVLDVFTYT-GGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI  220 (324)
T ss_dssp             CCTTCEEEETTCTT-THHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             cCCCCeeecccCcc-cchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCc
Confidence            57899998887753 4445555544 76 89999999887655533   33442   22222223333333   237999


Q ss_pred             EEEcCC---Cc------------ccHHHHHhccccCCEEEEeCCC
Q 027664          110 IIDTVS---AV------------HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       110 v~d~~g---~~------------~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      |+--.+   ..            ..+..+.+++++||.++.+...
T Consensus       221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             hhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            973222   11            1345677899999999988543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.56  E-value=0.019  Score=42.24  Aligned_cols=33  Identities=36%  Similarity=0.361  Sum_probs=29.3

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      .|+|+|||+.|++++..++..|.++++....++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            489999999999999999999999999987653

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.53  E-value=0.083  Score=34.61  Aligned_cols=137  Identities=13%  Similarity=0.109  Sum_probs=74.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHCCC---eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc
Q 027664           43 GMHVGVVGL-GGLGHVAVKFAKAMGV---KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~la~~~g~---~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      |-+|-|+|+ |-+|.-+++++..+..   ++.....+....... . ...........   ........|++|-+.+...
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~-~-~~~~~~~~~~~---~~~~~~~~d~~f~~~~~~~   75 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL-K-FKDQDITIEET---TETAFEGVDIALFSAGSST   75 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE-E-ETTEEEEEEEC---CTTTTTTCSEEEECSCHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc-c-ccCCccccccc---chhhhhhhhhhhhccCccc
Confidence            457899998 9999999999987742   555454432211100 0 00111000000   0011137899999998775


Q ss_pred             cHHHHHhccccCCEEEEeCCCCC---CCCCCchhh----hcCCeEEEEEecCCHHHHHHHHHHHHcCCCccce
Q 027664          119 PLMPLIGLLKSQGKLVLLGAPEK---PLELPAFPL----LTGRKIVGGSLIGGLKETQEMIDFAAKHNIRADI  184 (220)
Q Consensus       119 ~~~~~~~~l~~~G~~v~~g~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~g~i~~~~  184 (220)
                      ..+........+.+++..+..-.   ....-.+.+    ..+...+...-......+..+..++++|.+++..
T Consensus        76 s~~~~~~~~~~~~~VIDlSsdfR~~~~~~~~~pe~n~~~~~~~~~iIAnPgC~tt~i~~l~PL~~~~lik~~~  148 (154)
T d2gz1a1          76 SAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNAAWNSVQIAETLHERGLVRPTA  148 (154)
T ss_dssp             HHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGCCSEEECCCTHHHHHHHHHHHHHTTCCSCCS
T ss_pred             hhhHHhhhccccceehhcChhhhccCCcccccchhhHHHhcCcCceEECCCCHHHHHHHHHHHHHhcCCCccc
Confidence            56666677788888888765431   122222222    1222223333222223344566788888888764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.49  E-value=0.091  Score=35.98  Aligned_cols=72  Identities=25%  Similarity=0.298  Sum_probs=45.7

Q ss_pred             HHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEE
Q 027664           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      +...+. -.|++||-.|+|. |..++. +...|+ +|+.++.+++..+.+.+......+++.+    +.++.+.||+||-
T Consensus        41 ~~~~~d-l~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D----~~~l~~~fD~Vi~  113 (197)
T d1ne2a_          41 IYNDGN-IGGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD----VSEISGKYDTWIM  113 (197)
T ss_dssp             HHHHTS-SBTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC----GGGCCCCEEEEEE
T ss_pred             HHHcCC-CCCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEEe----hhhcCCcceEEEe
Confidence            344454 4689999999874 655544 444676 8999999988777665555433333322    2334457888873

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.46  E-value=0.017  Score=41.81  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=28.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      +|+|+|+|..|+.++..+...|.+|+++..++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            48999999999999999888999999998764

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.038  Score=40.54  Aligned_cols=59  Identities=17%  Similarity=0.168  Sum_probs=41.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcC--CccEEEEcCCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~d~v~d~~g~  116 (220)
                      ++|||.|+ |-+|..++..+...|..++++....+              +|..+.+.+.++..  .+|.++.+++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~--------------~~~~~~~~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE--------------LNLLDSRAVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT--------------CCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh--------------ccccCHHHHHHHHhhcCCCEEEEcchh
Confidence            47999997 99999999999888988776654432              13334444444432  68888887644

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.022  Score=39.45  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=27.6

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      |+|+|+|+.|+.++..|..+|.+|.++...
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.39  E-value=0.018  Score=42.85  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=27.2

Q ss_pred             EEEEEccchhHHHHHHHHH-----HCCCeEEEEeCCcc
Q 027664           45 HVGVVGLGGLGHVAVKFAK-----AMGVKVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~-----~~g~~vi~~~~~~~   77 (220)
                      -|+|+|+|+.|++++.++.     ..|.+|+++.+.+.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            3899999999999987763     57999999987654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.38  E-value=0.024  Score=41.45  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=31.4

Q ss_pred             CCCEEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           42 PGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        42 ~~~~vlI~G~-g--~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      +|+++||.|+ |  ++|.++++.+...|++|+++.+++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            6899999997 4  7999999999999999998887653

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.36  E-value=0.023  Score=39.76  Aligned_cols=31  Identities=26%  Similarity=0.198  Sum_probs=28.2

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      |+|+|+|..|+.++..+...|.+|.++...+
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            7899999999999988888899999999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.34  E-value=0.052  Score=35.53  Aligned_cols=49  Identities=18%  Similarity=0.123  Sum_probs=39.3

Q ss_pred             hhhhhhHHHhhcCCCCCCEEEEE--ccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           27 GITVYSPLRFYGLDKPGMHVGVV--GLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        27 ~~ta~~~l~~~~~~~~~~~vlI~--G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      ..|...++.  +...+++.++|+  |+|-+|+.+++.+...|.+|+++.+.+.
T Consensus        25 v~t~~d~l~--~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          25 QLTPEQVMD--GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             EECHHHHHH--TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             EECHHHHhc--CccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            346666654  335788888887  7799999999999999999999998753

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.33  E-value=0.011  Score=38.79  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=30.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccch
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKK   79 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~   79 (220)
                      ...+|.|+|+|.+|..++..+...|.  +++.++..+++.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            45689999999999998877777663  888888877543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.31  E-value=0.023  Score=38.72  Aligned_cols=34  Identities=21%  Similarity=0.247  Sum_probs=29.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      ...|+|+|+|+.|+.++..+...|.+++++....
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            3579999999999999998889999998887543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.02  Score=42.09  Aligned_cols=32  Identities=31%  Similarity=0.332  Sum_probs=28.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      .++|+|||..|+.++..+...|.+|.++..++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            37899999999999998888899999998875

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.26  E-value=0.33  Score=31.03  Aligned_cols=69  Identities=19%  Similarity=0.266  Sum_probs=41.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHc----C--CCEEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL----G--ADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~----g--~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      +|.|+|+|.+|..++..+...+.  ++...+.++++.+....++    .  ....+...+.    +...+.|+|+-|+|.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~----~~~~~adivvitag~   77 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY----ADLKGSDVVIVAAGV   77 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG----GGGTTCSEEEECCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH----HHhcCCCEEEEeccc
Confidence            57888999999988876665554  7888887765433221221    0  1111111111    123489999999886


Q ss_pred             c
Q 027664          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      +
T Consensus        78 ~   78 (140)
T d1a5za1          78 P   78 (140)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.24  E-value=0.028  Score=38.97  Aligned_cols=30  Identities=40%  Similarity=0.436  Sum_probs=27.3

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      ++|+|+|+.|+.++..|...|.+|.++...
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            788899999999999999999999999765

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.24  E-value=0.034  Score=37.76  Aligned_cols=91  Identities=16%  Similarity=0.179  Sum_probs=53.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCccchHHH---HHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKKSEA---VERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      +|-|+|+ |-+|+-.++++..+- .++..+.........+   ...+........  .........+.|++|-|.+... 
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dvvf~alp~~~-   83 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNL--VAVKDADFSNVDAVFCCLPHGT-   83 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCC--BCGGGCCGGGCSEEEECCSSSH-
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccc--hhhhhhhhcccceeeeccccch-
Confidence            5889998 999999999998764 4776665443322222   111111100000  0011111237899999999874 


Q ss_pred             HHHHHhccccCCEEEEeCC
Q 027664          120 LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~g~  138 (220)
                      .......+...+..+....
T Consensus        84 s~~~~~~l~~~~~~v~~~~  102 (183)
T d2cvoa1          84 TQEIIKGLPQELKIVDLSA  102 (183)
T ss_dssp             HHHHHHTSCSSCEEEECSS
T ss_pred             HHHHHHHHHhcCcccccch
Confidence            4455566777788776543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.22  E-value=0.05  Score=35.71  Aligned_cols=35  Identities=20%  Similarity=0.118  Sum_probs=29.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~   76 (220)
                      .+++|+|+|+|.+|.-++..+...|+ .|+++.+.+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            46789999999999999999999999 577776654

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.19  E-value=0.028  Score=39.32  Aligned_cols=31  Identities=32%  Similarity=0.296  Sum_probs=28.3

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      |+|+|+||.|+.++..+...|.+|.++...+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7889999999999999999999999998654

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.2  Score=36.26  Aligned_cols=99  Identities=18%  Similarity=0.187  Sum_probs=59.4

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHH---HHcCCC-EEEcCCCHHHHHHh-cCCccEEE-
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAV---ERLGAD-SFLVSRDQDEMQAA-MGTMDGII-  111 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~---~~~g~~-~~~~~~~~~~~~~~-~~~~d~v~-  111 (220)
                      ..++|++||=..|++=|..+ +++... +.+|++.+.+..|...+.   +.+|.. .++...+....... .+.||.|+ 
T Consensus        99 ~~~~g~~vLD~CAaPGgKt~-~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~  177 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGKTT-HILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL  177 (284)
T ss_dssp             CCCTTCEEEEESCTTCHHHH-HHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CccccceeEeccCccccchh-hhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEE
Confidence            35899999988655534433 334333 358999999988865543   456764 23332222222222 23699885 


Q ss_pred             E--cCCCc-------------------------ccHHHHHhccccCCEEEEeCC
Q 027664          112 D--TVSAV-------------------------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       112 d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      |  |+|..                         ..+..++..+++||++|...-
T Consensus       178 DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         178 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             eccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence            5  55542                         123556778999999987644

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.13  E-value=0.022  Score=39.59  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=27.7

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      ++|+|+|+.|+.++..+...|.+|.++...
T Consensus         8 lvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           8 LLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            789999999999999999999999999864

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.12  E-value=0.069  Score=40.50  Aligned_cols=96  Identities=15%  Similarity=0.055  Sum_probs=62.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHc---CCC----------------EEEcCCCHHHHH-
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL---GAD----------------SFLVSRDQDEMQ-  101 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~---g~~----------------~~~~~~~~~~~~-  101 (220)
                      +.+|| -+-++.|...+++++..|+ +|+..+.+++..+.+.+.+   +..                ..++..+..... 
T Consensus        46 ~~~vL-D~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          46 PKIVL-DALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CSEEE-ESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCEEE-EcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            34433 3445568889999998888 8999999988777665543   211                111112222222 


Q ss_pred             HhcCCccEE-EEcCCCcc-cHHHHHhccccCCEEEEeCCC
Q 027664          102 AAMGTMDGI-IDTVSAVH-PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       102 ~~~~~~d~v-~d~~g~~~-~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      +....||+| +|..|.+. .++.++++++.+|.++.....
T Consensus       125 ~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD  164 (375)
T d2dula1         125 ERHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATD  164 (375)
T ss_dssp             HSTTCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hhcCcCCcccCCCCCCcHHHHHHHHHHhccCCEEEEEecC
Confidence            222379977 79988853 478899999999998877543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.10  E-value=0.031  Score=39.01  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=28.7

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      -|+|+|+|+.|+.++..|...|.+|++++..+.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            378899999999999988889999999987643

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.97  E-value=0.013  Score=40.40  Aligned_cols=31  Identities=13%  Similarity=0.150  Sum_probs=24.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTV   71 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~   71 (220)
                      ..++.+++.|+|++|++++|+++.+|++.++
T Consensus       161 ~~~~~~~i~g~g~~g~~aiq~a~~~g~~~ii  191 (194)
T d1f8fa1         161 PFDQLVKFYAFDEINQAAIDSRKGITLKPII  191 (194)
T ss_dssp             CGGGGEEEEEGGGHHHHHHHHHHTSCSEEEE
T ss_pred             CcccEEEEeCcHHHHHHHHHHHHHcCCCEEE
Confidence            3455667778899999999999999995443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.95  E-value=0.036  Score=41.22  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=27.5

Q ss_pred             CEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCcc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPS   77 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~   77 (220)
                      ++|+|+|||+.|++++..++..|  .+|++..+++.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            57999999999999987665545  48999888853

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.91  E-value=0.37  Score=31.62  Aligned_cols=39  Identities=18%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccch
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKK   79 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~   79 (220)
                      .+..+|.|+|+|.+|..++..+...|.  +++.++.++++.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            456789999999999999998888886  788888776543

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.097  Score=38.84  Aligned_cols=73  Identities=18%  Similarity=0.077  Sum_probs=46.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCc------c----chHHHH--HHcCCCEE-EcCCCHHHHHHhcC--Cc
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP------S----KKSEAV--ERLGADSF-LVSRDQDEMQAAMG--TM  107 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~------~----~~~~~~--~~~g~~~~-~~~~~~~~~~~~~~--~~  107 (220)
                      ++|||.|+ |-+|..++..+...|.+|+++++..      .    ......  ..-....+ .|-.+.+.+.+...  .+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~   82 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF   82 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccccc
Confidence            68999997 9999999988888899999986311      1    111111  11122222 24455566665433  67


Q ss_pred             cEEEEcCCC
Q 027664          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~v~d~~g~  116 (220)
                      ++++.+++.
T Consensus        83 ~~i~h~Aa~   91 (346)
T d1ek6a_          83 MAVIHFAGL   91 (346)
T ss_dssp             EEEEECCSC
T ss_pred             ccccccccc
Confidence            888888764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.035  Score=41.04  Aligned_cols=31  Identities=35%  Similarity=0.416  Sum_probs=27.9

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      |+|+|+|..|+.++..++..|.+|+++...+
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999888999999998654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.71  E-value=0.36  Score=33.46  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=62.9

Q ss_pred             hhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc--------cchHHHHHHcCCCEEEcCC-CHHHH
Q 027664           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP--------SKKSEAVERLGADSFLVSR-DQDEM  100 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~--------~~~~~~~~~~g~~~~~~~~-~~~~~  100 (220)
                      +.+++..+.--.+.+++++|+|..|..++++....+. +++.+++..        ....+..+.+.-.  .+.. ....+
T Consensus        14 l~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~l   91 (222)
T d1vl6a1          14 LNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARI--TNPERLSGDL   91 (222)
T ss_dssp             HHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHT--SCTTCCCSCH
T ss_pred             HHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhh--hcchhhhcch
Confidence            4456655554567899999999999999988888787 788877651        1111121111100  0000 01123


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEeCCCCC
Q 027664          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       101 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~  141 (220)
                      .....+.+.++-.....-...+.+..+.+.-.+.-+..+..
T Consensus        92 ~~~l~g~~~~~g~~~~~~~~~e~m~~~~~rPIIFpLSNPt~  132 (222)
T d1vl6a1          92 ETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVP  132 (222)
T ss_dssp             HHHHTTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             HhhccCcceeccccccccccHHHHhhcCCCCEEEecCCCcc
Confidence            33345778777766554333456666767666666655543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.71  E-value=0.1  Score=34.02  Aligned_cols=38  Identities=18%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccch
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKK   79 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~   79 (220)
                      |..+|.|+|+|.+|..++.++...+. ++...+..+++.
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~   40 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMP   40 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence            45689999999999988888888787 888888776543

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.68  E-value=0.037  Score=39.66  Aligned_cols=32  Identities=13%  Similarity=0.217  Sum_probs=28.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      -|+|+|+|.+|+.++..+...|.+|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999988878899999998754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=93.65  E-value=0.23  Score=32.98  Aligned_cols=95  Identities=15%  Similarity=0.094  Sum_probs=52.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHH---HHcCC-CEEEcCCCHHHHH---HhcCCccEEEE
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGA-DSFLVSRDQDEMQ---AAMGTMDGIID  112 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~---~~~g~-~~~~~~~~~~~~~---~~~~~~d~v~d  112 (220)
                      +.+|.+||=.|+|. |...+.. ...|++++.++.++...+.+.   +.++. +.+..........   .....||+||-
T Consensus        39 ~~~g~~vLDl~~G~-G~~~i~a-~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~  116 (171)
T d1ws6a1          39 YPRRGRFLDPFAGS-GAVGLEA-ASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM  116 (171)
T ss_dssp             CTTCCEEEEETCSS-CHHHHHH-HHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCCCeEEEecccc-chhhhhh-hhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence            57888999887642 3333443 346899998888876554442   34555 3343332222222   12237999973


Q ss_pred             c----CCCcccHHHHH--hccccCCEEEEe
Q 027664          113 T----VSAVHPLMPLI--GLLKSQGKLVLL  136 (220)
Q Consensus       113 ~----~g~~~~~~~~~--~~l~~~G~~v~~  136 (220)
                      -    .+-...+..+.  ..++++|.++.-
T Consensus       117 DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         117 APPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             CCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             ccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            1    12222233333  357888887754

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.60  E-value=0.24  Score=31.89  Aligned_cols=70  Identities=17%  Similarity=0.209  Sum_probs=42.5

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHc-------CCCEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL-------GADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      .+|.|+|+|.+|..++..+...|.  +++.++.++++.+-...++       +...+....+.+    ...+.|+|+-++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~----~~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE----ICRDADMVVITA   77 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG----GGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHH----HhhCCcEEEEec
Confidence            468889999999999887777776  7888887765432211111       112222111111    123678888888


Q ss_pred             CCc
Q 027664          115 SAV  117 (220)
Q Consensus       115 g~~  117 (220)
                      |.+
T Consensus        78 G~~   80 (143)
T d1llda1          78 GPR   80 (143)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.54  E-value=0.069  Score=33.11  Aligned_cols=36  Identities=17%  Similarity=0.032  Sum_probs=28.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHH---CCCeEEEEeCCcc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKA---MGVKVTVISTSPS   77 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~---~g~~vi~~~~~~~   77 (220)
                      ..++++|+|+|.+|.-++.++..   .|.+|.++.+.+.
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            35799999999999988876554   3779998887653

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=93.53  E-value=0.053  Score=38.81  Aligned_cols=96  Identities=21%  Similarity=0.182  Sum_probs=58.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHH---HHcCC-CEE-EcCCCHHHHHHhcCCccEEEEc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAV---ERLGA-DSF-LVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~---~~~g~-~~~-~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      +....+||-+|+| .|..+..++++. +.++++++.+ +-.+.+.   +..|. +.+ +...+.  ......++|+++-.
T Consensus        79 ~~~~~~vlDvG~G-~G~~~~~l~~~~P~~~~~~~Dlp-~~~~~a~~~~~~~~~~~ri~~~~~d~--~~~~p~~~D~v~~~  154 (256)
T d1qzza2          79 WSAVRHVLDVGGG-NGGMLAAIALRAPHLRGTLVELA-GPAERARRRFADAGLADRVTVAEGDF--FKPLPVTADVVLLS  154 (256)
T ss_dssp             CTTCCEEEEETCT-TSHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHTTCTTTEEEEECCT--TSCCSCCEEEEEEE
T ss_pred             CccCCEEEEECCC-CCHHHHHHHHhhcCcEEEEecCh-HHHHHHHHHHhhcCCcceeeeeeeec--cccccccchhhhcc
Confidence            5777899999987 488899999887 6699998864 3232221   23332 211 111111  11122378887632


Q ss_pred             C-----CCc---ccHHHHHhccccCCEEEEeCCC
Q 027664          114 V-----SAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       114 ~-----g~~---~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                      -     +.+   ..+..+.+.|++||+++.+...
T Consensus       155 ~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         155 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            1     111   2357788899999999988653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=93.50  E-value=0.04  Score=40.29  Aligned_cols=31  Identities=45%  Similarity=0.580  Sum_probs=28.0

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      |+|+|+|..|+.++.-|...|++|+++...+
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            8999999999999988888999999998654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.046  Score=37.78  Aligned_cols=30  Identities=23%  Similarity=0.381  Sum_probs=27.4

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      ++|+|+|+.|+.++..+...|.+|.++...
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            688899999999999999999999999764

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.47  E-value=0.064  Score=40.32  Aligned_cols=71  Identities=13%  Similarity=0.099  Sum_probs=43.6

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCCe-EEEEeCCcc--chHHHHHHcC----CCEE-EcCCCHHHHHHhcC--CccEEEEc
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGVK-VTVISTSPS--KKSEAVERLG----ADSF-LVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~~-vi~~~~~~~--~~~~~~~~~g----~~~~-~~~~~~~~~~~~~~--~~d~v~d~  113 (220)
                      +|||.|+ |-+|..++..+...|.+ |+.++....  ....+ +.+.    .+.. .|-.+.+.+.++..  .+|+||.+
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   80 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL   80 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHH-HhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence            6899997 99999999888777885 455543221  12212 1221    1211 24455556655433  79999999


Q ss_pred             CCC
Q 027664          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      ++.
T Consensus        81 Aa~   83 (361)
T d1kewa_          81 AAE   83 (361)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            874

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.45  E-value=0.062  Score=34.77  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=26.5

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSK   78 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~   78 (220)
                      .+|.|+|+|.+|..++..+...+.  +++.++..+++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            357888999999999887777765  78888877765

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.41  E-value=0.055  Score=36.48  Aligned_cols=91  Identities=16%  Similarity=0.160  Sum_probs=51.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCc------cchHHHHHHc-CC-C-EEEcCCCHHHHHHhcCCccEEEEc
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSP------SKKSEAVERL-GA-D-SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~-g~~vi~~~~~~------~~~~~~~~~~-g~-~-~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      +|.|+|+ |-+|+-+++++..+ ..++..+....      ++.......+ +. + ......+   ........|++|-|
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dvvf~a   79 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSD---VRDFSADVDVVFLA   79 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESC---GGGTCTTCCEEEEC
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchh---hhhhhcccceeecc
Confidence            5889998 99999999999887 55766543221      1122221111 11 1 1111111   11222478999999


Q ss_pred             CCCcccHHHHHhccccCCEEEEeCC
Q 027664          114 VSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 ~g~~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      .+........-.....+-+++..+.
T Consensus        80 lp~~~s~~~~~~~~~~~~~vIDlSa  104 (179)
T d2g17a1          80 TAHEVSHDLAPQFLQAGCVVFDLSG  104 (179)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             ccchhHHHHhhhhhhcCceeecccc
Confidence            9987544555555666667777654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.38  E-value=0.34  Score=31.73  Aligned_cols=72  Identities=17%  Similarity=0.237  Sum_probs=44.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchHHHHHHc-------CCCEEEcCCCHHHHHHhcCCccEEEE
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL-------GADSFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~d~v~d  112 (220)
                      ...+|.|+|+|.+|..++..+...|.  +++.++.++++..-.+.++       +...++...+.    +...+.|+|+-
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~----~~~~~adivvi   93 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY----NVSANSKLVII   93 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG----GGGTTEEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch----hhhccccEEEE
Confidence            33579999999999999988887776  7888887765432221222       11222211111    11247888888


Q ss_pred             cCCCc
Q 027664          113 TVSAV  117 (220)
Q Consensus       113 ~~g~~  117 (220)
                      ++|.+
T Consensus        94 tag~~   98 (159)
T d2ldxa1          94 TAGAR   98 (159)
T ss_dssp             CCSCC
T ss_pred             ecccc
Confidence            88764

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.37  E-value=0.042  Score=38.45  Aligned_cols=30  Identities=30%  Similarity=0.290  Sum_probs=27.4

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      |+|+|+|+.|+.++..|...|.+|.++...
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            789999999999999999999999999854

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.36  E-value=0.086  Score=37.16  Aligned_cols=86  Identities=13%  Similarity=0.167  Sum_probs=53.5

Q ss_pred             CEEEEEccchh----HHHHHHHHHHC--CCeEEEEe-CCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCC
Q 027664           44 MHVGVVGLGGL----GHVAVKFAKAM--GVKVTVIS-TSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~g~~----G~~~~~la~~~--g~~vi~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  116 (220)
                      =+|.|+|+|..    +...+...+..  +++++++. ++.++.+++.+.++....-.+.+.+++.+ ...+|+|+.|+..
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~iD~V~i~tp~   95 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQ-YKDIDMIVVSVKV   95 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHH-CTTCSEEEECSCH
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhccc-ccccceeeccCCC
Confidence            36789998654    33334444443  56888655 44556667777887643323344433321 1379999999998


Q ss_pred             cccHHHHHhccccC
Q 027664          117 VHPLMPLIGLLKSQ  130 (220)
Q Consensus       117 ~~~~~~~~~~l~~~  130 (220)
                      ....+....++..|
T Consensus        96 ~~h~~~~~~al~aG  109 (237)
T d2nvwa1          96 PEHYEVVKNILEHS  109 (237)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             cchhhHHHHHHHhc
Confidence            76777777777655

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.31  E-value=0.06  Score=36.73  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=31.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV   83 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~   83 (220)
                      +|.|+|.|-+|+.++.++ +.|.+|+.++.++++.+.+.
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHh
Confidence            578899999999887666 46999999999988777663

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.29  E-value=0.042  Score=38.01  Aligned_cols=30  Identities=33%  Similarity=0.401  Sum_probs=27.2

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      |+|+|+|+-|+.++..|...|.+|.++...
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            788899999999999999999999999864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.05  E-value=0.053  Score=38.95  Aligned_cols=31  Identities=32%  Similarity=0.347  Sum_probs=27.6

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      |+|+|+|.+|+.++.-+...|.+|+++++.+
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999988778899999998753

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.05  E-value=0.15  Score=36.65  Aligned_cols=97  Identities=15%  Similarity=0.205  Sum_probs=54.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHH----C-C--CeEEEEeCCccchHHHHHHcCC-----CEEEcC--CCHHHH-HHh--
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKA----M-G--VKVTVISTSPSKKSEAVERLGA-----DSFLVS--RDQDEM-QAA--  103 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~----~-g--~~vi~~~~~~~~~~~~~~~~g~-----~~~~~~--~~~~~~-~~~--  103 (220)
                      +++-+||-+|+|. |..+..+++.    . +  .++++++.++...+.+.+...-     ...++.  ...+.. ...  
T Consensus        39 ~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (280)
T d1jqea_          39 KSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE  117 (280)
T ss_dssp             CSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence            4444799999863 5544444332    2 3  3677888887766666544321     111221  122211 111  


Q ss_pred             ---cCCccEEEEcCC-----C-cccHHHHHhccccCCEEEEeCC
Q 027664          104 ---MGTMDGIIDTVS-----A-VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       104 ---~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~G~~v~~g~  138 (220)
                         .+.||+|+-.-.     . ...+..+.++|+++|.++....
T Consensus       118 ~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         118 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             SSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence               137999874322     2 1357788899999999887643

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.03  E-value=0.19  Score=35.48  Aligned_cols=36  Identities=28%  Similarity=0.462  Sum_probs=30.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHH-HHCCCeEEEEeCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFA-KAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la-~~~g~~vi~~~~~~   76 (220)
                      -.|.+|+|.|-|.+|..+++++ +..|++|+.+..+.
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~   66 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK   66 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccc
Confidence            3689999999999999999876 56799999887764

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=92.90  E-value=0.13  Score=38.01  Aligned_cols=97  Identities=20%  Similarity=0.089  Sum_probs=58.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHH---cCCC-E-EEcCCCHHHHHHh---cCCccEEEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD-S-FLVSRDQDEMQAA---MGTMDGIID  112 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~---~g~~-~-~~~~~~~~~~~~~---~~~~d~v~d  112 (220)
                      .+|++||=.++|. |..++.+++ -+.+|+.++.++...+.+.+.   .|.+ . .+..+..+..+.+   .+.||+|+-
T Consensus       144 ~~g~rVLDl~~gt-G~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         144 FRGERALDVFSYA-GGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CCEEEEEEETCTT-THHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeeeccCCCC-cHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            4789999888754 444556664 245999999998876655433   3543 2 2222223333333   237999873


Q ss_pred             -c--CCC--c----------ccHHHHHhccccCCEEEEeCCC
Q 027664          113 -T--VSA--V----------HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       113 -~--~g~--~----------~~~~~~~~~l~~~G~~v~~g~~  139 (220)
                       .  .+.  .          ..+..+.+.|++||.++.+...
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence             2  211  1          1234677899999999987553

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=0.12  Score=33.43  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=46.3

Q ss_pred             EEEEEcc-chhHHHHHH-HHHHC--C-CeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           45 HVGVVGL-GGLGHVAVK-FAKAM--G-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~-la~~~--g-~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      +|-|+|| |.+|+-.++ ++.+.  - .+++....+...............+.+..+.+.    ..++|++|-|++....
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~----~~~~DivF~a~~~~~s   78 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA----LKALDIIVTCQGGDYT   78 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH----HHTCSEEEECSCHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhh----hhcCcEEEEecCchHH
Confidence            6889998 999999997 45443  2 266666555332111100011111112212111    1379999999998743


Q ss_pred             HHHHHhccccCC--EEEEeCC
Q 027664          120 LMPLIGLLKSQG--KLVLLGA  138 (220)
Q Consensus       120 ~~~~~~~l~~~G--~~v~~g~  138 (220)
                      ....-.....+-  .++..+.
T Consensus        79 ~~~~~~~~~~g~~~~VID~Ss   99 (146)
T d1t4ba1          79 NEIYPKLRESGWQGYWIDAAS   99 (146)
T ss_dssp             HHHHHHHHHTTCCCEEEECSS
T ss_pred             HHhhHHHHhcCCCeecccCCc
Confidence            333333334442  3555543

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.80  E-value=0.26  Score=37.00  Aligned_cols=31  Identities=26%  Similarity=0.355  Sum_probs=25.3

Q ss_pred             CCEEEEEcc-chhHHHHHH-HHHHCCCeEEEEe
Q 027664           43 GMHVGVVGL-GGLGHVAVK-FAKAMGVKVTVIS   73 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~-la~~~g~~vi~~~   73 (220)
                      +-+|||.|+ |-+|..++. |++..|.+|++++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            357999997 999988775 6677889999886

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.64  E-value=0.068  Score=37.23  Aligned_cols=34  Identities=18%  Similarity=0.195  Sum_probs=27.3

Q ss_pred             CEEEEEccchhHHHHHHHHH-H-CCCeEEEEeCCcc
Q 027664           44 MHVGVVGLGGLGHVAVKFAK-A-MGVKVTVISTSPS   77 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~-~-~g~~vi~~~~~~~   77 (220)
                      .+|.|+|+|+.|+.++..++ + .|.+|++....+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            37999999999999997554 3 5779999987753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.61  E-value=0.091  Score=32.57  Aligned_cols=36  Identities=22%  Similarity=0.107  Sum_probs=28.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCC---CeEEEEeCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMG---VKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g---~~vi~~~~~~   76 (220)
                      +..++++|+|+|.+|.-++..++.+|   .+|+++.+.+
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            34579999999999999887776654   4688887765

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=92.55  E-value=0.06  Score=39.77  Aligned_cols=31  Identities=29%  Similarity=0.290  Sum_probs=28.0

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      |+|+|+|+.|+.++.-|...|++|+++....
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            8999999999999998888999999998754

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.49  E-value=0.054  Score=39.90  Aligned_cols=32  Identities=38%  Similarity=0.506  Sum_probs=28.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      -|+|+|+|..|+.++.-|...|++|+++...+
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999988888899999998654

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.43  E-value=0.18  Score=33.39  Aligned_cols=91  Identities=15%  Similarity=0.122  Sum_probs=52.1

Q ss_pred             EEEEEccchhHHHHHHHHHHC--CC--eEEEEeCCccch-----------HHHHHHcCCCEEEcCCCHHHHHHh-c--CC
Q 027664           45 HVGVVGLGGLGHVAVKFAKAM--GV--KVTVISTSPSKK-----------SEAVERLGADSFLVSRDQDEMQAA-M--GT  106 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~--g~--~vi~~~~~~~~~-----------~~~~~~~g~~~~~~~~~~~~~~~~-~--~~  106 (220)
                      .|.|.|.|.+|...+++....  +.  ++..+..+....           ....+.+... .......+.+... .  ..
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   84 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAAS-TTKTLPLDDLIAHLKTSPK   84 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTC-CCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhc-ccccccHHHHHHHhccCCC
Confidence            467889999999998776543  33  566655443210           0001111110 0111122222222 2  26


Q ss_pred             ccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027664          107 MDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       107 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      .++++||.++.+........+..|-++|..
T Consensus        85 ~~vivd~t~~~~~~~~~~~aL~~G~hVVTA  114 (168)
T d1ebfa1          85 PVILVDNTSSAYIAGFYTKFVENGISIATP  114 (168)
T ss_dssp             CEEEEECSCCHHHHTTHHHHHHTTCEEECC
T ss_pred             ceEEEEecCChHHHHHHHHHHHcCCeEEec
Confidence            789999999887666777788888888775

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=92.42  E-value=0.065  Score=39.49  Aligned_cols=31  Identities=35%  Similarity=0.593  Sum_probs=27.9

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      |+|+|+|..|+.++.-|...|++|+++...+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999988888899999998754

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.41  E-value=0.77  Score=30.51  Aligned_cols=88  Identities=22%  Similarity=0.263  Sum_probs=50.5

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCccchHHH---HHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCccc
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKKSEA---VERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g-~~vi~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~  119 (220)
                      +|-|+|+ |-+|+-.++++..+- .++..+..+......+   ...+-.+..+...+.+.   +..+.|++|-|.+....
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~---~~~~~dvvf~a~p~~~s   79 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEK---VSKNCDVLFTALPAGAS   79 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHH---HHHHCSEEEECCSTTHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhH---hccccceEEEccccHHH
Confidence            5789998 999999999887654 4777665554322222   11221222222233322   22368999999998743


Q ss_pred             HHHHHhccccCCEEEEeC
Q 027664          120 LMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       120 ~~~~~~~l~~~G~~v~~g  137 (220)
                       ....... .+.+++..+
T Consensus        80 -~~~~~~~-~~~~VIDlS   95 (176)
T d1vkna1          80 -YDLVREL-KGVKIIDLG   95 (176)
T ss_dssp             -HHHHTTC-CSCEEEESS
T ss_pred             -HHHHHhh-ccceEEecC
Confidence             3333332 456666654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.27  E-value=0.44  Score=34.94  Aligned_cols=99  Identities=20%  Similarity=0.193  Sum_probs=59.2

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCC--CeEEEEeCCccchHHHH---HHcCCCEEEc-CCCHHHHHHhcCCccEEE-
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAV---ERLGADSFLV-SRDQDEMQAAMGTMDGII-  111 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g--~~vi~~~~~~~~~~~~~---~~~g~~~~~~-~~~~~~~~~~~~~~d~v~-  111 (220)
                      ..++|++||=..|++=|. +.+++...+  ..+++.+.++.|...+.   +.+|...++. ..+..........||.|+ 
T Consensus       113 ~~~~g~~vlD~CAapGgK-t~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILv  191 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGK-TSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  191 (313)
T ss_dssp             CCCTTCEEEECCSSCSHH-HHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             cCCccceeeecccchhhh-hHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEE
Confidence            368999988775544343 444555443  37888998887765543   4566643332 233222333344789885 


Q ss_pred             E--cCCCc-------------------------ccHHHHHhccccCCEEEEeCC
Q 027664          112 D--TVSAV-------------------------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       112 d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      |  |+|..                         ..+..++..+++||++|...-
T Consensus       192 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC  245 (313)
T d1ixka_         192 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  245 (313)
T ss_dssp             ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence            4  55542                         123557788899998887644

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=92.15  E-value=0.079  Score=38.17  Aligned_cols=34  Identities=35%  Similarity=0.401  Sum_probs=27.9

Q ss_pred             CCEEEEEccchhHHHHHH-HHHHCCCeEEEEeCCc
Q 027664           43 GMHVGVVGLGGLGHVAVK-FAKAMGVKVTVISTSP   76 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~-la~~~g~~vi~~~~~~   76 (220)
                      ..-|+|+|+|+.|+.++. +++..|.+|.+++..+
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            344999999999998876 5566799999999775

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.99  E-value=0.057  Score=37.65  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=27.4

Q ss_pred             CEEEEEccchhHHHHHHHHHHCC-------CeEEEEeCCcc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMG-------VKVTVISTSPS   77 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g-------~~vi~~~~~~~   77 (220)
                      -+|.|+|+|+.|++++..+...|       .+|.+....+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            47999999999999997766655       57888887653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.096  Score=38.77  Aligned_cols=72  Identities=15%  Similarity=0.125  Sum_probs=44.6

Q ss_pred             EE-EEEcc-chhHHHHHHHHHHCCCeEEEEeCCccc-----hHHHHH----Hc--CCCEE-EcCCCHHHHHHhcC--Ccc
Q 027664           45 HV-GVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-----KSEAVE----RL--GADSF-LVSRDQDEMQAAMG--TMD  108 (220)
Q Consensus        45 ~v-lI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~-----~~~~~~----~~--g~~~~-~~~~~~~~~~~~~~--~~d  108 (220)
                      +| ||.|+ |-+|..++..+...|.+|+++++....     .+.+.+    ..  ....+ .|-.+.+.+.++..  .++
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~   81 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcccc
Confidence            46 99997 999999999888889999999986431     111100    01  11111 13345555555433  678


Q ss_pred             EEEEcCCC
Q 027664          109 GIIDTVSA  116 (220)
Q Consensus       109 ~v~d~~g~  116 (220)
                      +++.+.+.
T Consensus        82 ~v~~~~a~   89 (347)
T d1t2aa_          82 EIYNLGAQ   89 (347)
T ss_dssp             EEEECCSC
T ss_pred             eeeeeeec
Confidence            88877664

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.93  E-value=0.16  Score=37.68  Aligned_cols=74  Identities=18%  Similarity=0.142  Sum_probs=45.2

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCcc--chHHHHHHc--CCCEE-EcCCCHHHHHHhcCCccEEEEcCC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPS--KKSEAVERL--GADSF-LVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~g~--~vi~~~~~~~--~~~~~~~~~--g~~~~-~~~~~~~~~~~~~~~~d~v~d~~g  115 (220)
                      .+|||.|+ |-+|..++..+...|.  ++++.+....  .........  +.+.+ .|-.+.+.+..+..++|.++.+++
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~a~   82 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA   82 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhhhh
Confidence            57999997 9999999887766665  5665553211  111110111  22222 344556677777778899988876


Q ss_pred             Cc
Q 027664          116 AV  117 (220)
Q Consensus       116 ~~  117 (220)
                      ..
T Consensus        83 ~~   84 (346)
T d1oc2a_          83 ES   84 (346)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.88  E-value=0.16  Score=37.48  Aligned_cols=44  Identities=18%  Similarity=0.096  Sum_probs=33.9

Q ss_pred             hhHHHhhcCCCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC
Q 027664           31 YSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      |..+.+... ..-+++||.|+ |-+|..++..+...|.+|+++++.
T Consensus         5 ~~~~~~~~~-~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_           5 YEELRKELP-AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             HHHHHHHHH-HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             HHHHHHhCC-CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            344444432 34478999997 999999999998999999999863

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.021  Score=38.08  Aligned_cols=93  Identities=19%  Similarity=0.270  Sum_probs=52.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHcC----CCEEEcCCCHHHHHHhcCCccEEEEcCCCcc
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLG----ADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      +|.|.|+ |-+|+++++++... +++++....++.... .-+.+|    .... +..-.+........+|+++|.+... 
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~-~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~DViIDFs~p~-   82 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL-LGSDAGELAGAGKT-GVTVQSSLDAVKDDFDVFIDFTRPE-   82 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT-CSCCTTCSSSSSCC-SCCEESCSTTTTTSCSEEEECSCHH-
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchh-ccchhhhhhccccC-CceeeccHHHHhcccceEEEeccHH-
Confidence            5788897 99999999988765 567776655432110 001111    0000 0000011222334789999998765 


Q ss_pred             cHHHHHhccccCCEEEEeCCCC
Q 027664          119 PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       119 ~~~~~~~~l~~~G~~v~~g~~~  140 (220)
                      .....++.....|.=+.+|..+
T Consensus        83 ~~~~~~~~a~~~~~~~ViGTTG  104 (162)
T d1diha1          83 GTLNHLAFCRQHGKGMVIGTTG  104 (162)
T ss_dssp             HHHHHHHHHHHTTCEEEECCCC
T ss_pred             HHHHHHHHHHhccceeEEecCC
Confidence            5666667766677666666544

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.70  E-value=0.31  Score=31.57  Aligned_cols=93  Identities=17%  Similarity=0.141  Sum_probs=50.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHH---HHcCC---CEEEcCCCHHHHHHhcCCccEEEEc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAV---ERLGA---DSFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~---~~~g~---~~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      -.|.+||=.|+|. |.+.+..+ .+|+ +|+.++.++...+.+.   +.++.   ..++..+-.+.++...+.||+||=-
T Consensus        13 ~~g~~vlDl~~Gt-G~~~iea~-~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          13 FNGGRVLDLFAGS-GGLAIEAV-SRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CCSCEEEEETCTT-CHHHHHHH-HTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCCeEEEcCCcc-CHHHHHHH-HhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEec
Confidence            4688888887642 33333433 4687 8999998876544332   33444   2233322233444545689999732


Q ss_pred             CC-Cc----ccHHHH--HhccccCCEEEE
Q 027664          114 VS-AV----HPLMPL--IGLLKSQGKLVL  135 (220)
Q Consensus       114 ~g-~~----~~~~~~--~~~l~~~G~~v~  135 (220)
                      -+ ..    ..++.+  .+.++++|.++.
T Consensus        91 PPy~~~~~~~~l~~i~~~~~L~~~g~iii  119 (152)
T d2esra1          91 PPYAKETIVATIEALAAKNLLSEQVMVVC  119 (152)
T ss_dssp             CSSHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             hhhccchHHHHHHHHHHCCCcCCCeEEEE
Confidence            11 11    112222  235777787765

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.53  E-value=0.74  Score=30.54  Aligned_cols=88  Identities=24%  Similarity=0.239  Sum_probs=62.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~---  118 (220)
                      ++++|.|+|=|+-|.+-++-+|-.|.+|++--+..++..+.++.-|.+ ++.      +.+.....|+|.-.++...   
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~-v~~------~~eA~~~aDiim~L~PD~~q~~   87 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLK-VAD------VKTAVAAADVVMILTPDEFQGR   87 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCE-EEC------HHHHHHTCSEEEECSCHHHHHH
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccc-ccc------HHHHhhhcCeeeeecchHHHHH
Confidence            568899999999999999999999999999888876554444566664 222      4445557899988877531   


Q ss_pred             cHH-HHHhccccCCEEEEe
Q 027664          119 PLM-PLIGLLKSQGKLVLL  136 (220)
Q Consensus       119 ~~~-~~~~~l~~~G~~v~~  136 (220)
                      .+. .....|+++..+...
T Consensus        88 vy~~~I~p~lk~g~~L~Fa  106 (182)
T d1np3a2          88 LYKEEIEPNLKKGATLAFA  106 (182)
T ss_dssp             HHHHHTGGGCCTTCEEEES
T ss_pred             HHHHhhhhhcCCCcEEEEe
Confidence            232 355567777666654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.52  E-value=0.11  Score=36.87  Aligned_cols=30  Identities=30%  Similarity=0.348  Sum_probs=27.3

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      ++|+|+|+.|+.++..|...|.+|.++...
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            688999999999999999999999999864

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.44  E-value=0.12  Score=33.88  Aligned_cols=40  Identities=23%  Similarity=0.389  Sum_probs=31.7

Q ss_pred             hhhhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeE
Q 027664           28 ITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKV   69 (220)
Q Consensus        28 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~v   69 (220)
                      .+++..|..  ....|++|+|+|+|.+|.-++..+...|+++
T Consensus        16 ~~a~d~L~~--~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          16 LSYLDVLRD--KAPVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             EEHHHHHTS--CCCCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             EEHHHHhhC--ccccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            445554543  3578999999999999999999999999854

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.39  E-value=0.11  Score=39.45  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=26.1

Q ss_pred             EEEEEccchhHHHHHHH-HH-----HCCCeEEEEeCCcc
Q 027664           45 HVGVVGLGGLGHVAVKF-AK-----AMGVKVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~l-a~-----~~g~~vi~~~~~~~   77 (220)
                      -|+|+|+|+.|++++.. ||     ..|.+|.++.+...
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            38999999999988754 44     27889999998754

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=91.32  E-value=0.12  Score=36.74  Aligned_cols=32  Identities=22%  Similarity=0.428  Sum_probs=28.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      -++|+|+|+.|+.++..+..+|.+|.++...+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            38889999999999999999999999998764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=91.12  E-value=0.24  Score=31.83  Aligned_cols=70  Identities=14%  Similarity=0.162  Sum_probs=42.6

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcC-C-------CEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG-A-------DSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g-~-------~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      .+|.|+|+|.+|..++.++...+. +++.++..+++.+....++. .       ..+....+.+    ...+.|+++-|+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~----~~~~advvvita   77 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA----DTANSDVIVVTS   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG----GGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH----HhcCCCEEEEee
Confidence            478899999999988876666666 88888887765433323321 1       1111111111    123678888888


Q ss_pred             CCc
Q 027664          115 SAV  117 (220)
Q Consensus       115 g~~  117 (220)
                      |.+
T Consensus        78 g~~   80 (142)
T d1uxja1          78 GAP   80 (142)
T ss_dssp             SCC
T ss_pred             ecc
Confidence            864

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.11  E-value=0.016  Score=41.77  Aligned_cols=46  Identities=15%  Similarity=0.040  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL   86 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~   86 (220)
                      ...|.++|-+|+|+ |...+..+.....+|+.++-++.-++.+.+.+
T Consensus        52 ~~~g~~vLDiGcG~-g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~   97 (263)
T d2g72a1          52 EVSGRTLIDIGSGP-TVYQLLSACSHFEDITMTDFLEVNRQELGRWL   97 (263)
T ss_dssp             CSCCSEEEEETCTT-CCGGGTTGGGGCSEEEEECSCHHHHHHHHHHH
T ss_pred             CCCCcEEEEeccCC-CHHHHHHhcccCCeEEEEeCCHHHHHHHHHHH
Confidence            36789999999975 54444444444559999999988777665444

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=91.06  E-value=0.16  Score=35.56  Aligned_cols=31  Identities=29%  Similarity=0.355  Sum_probs=28.1

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      |+|+|+|+-|+.++..+...|+++.++..+.
T Consensus         5 VIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           5 VLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            7889999999999999999999999888764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.01  E-value=0.18  Score=32.16  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=28.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHH----HHCCCeEEEEeCCcc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFA----KAMGVKVTVISTSPS   77 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la----~~~g~~vi~~~~~~~   77 (220)
                      +++++++|+|+|.+|.-++..+    +..|.+|+.+...+.
T Consensus        35 ~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          35 REVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             HHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            5678999999999997665433    457999998887653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.89  E-value=0.1  Score=31.78  Aligned_cols=35  Identities=20%  Similarity=0.050  Sum_probs=25.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      .|++|+|+|+|..|.-.+..+...+.+++...++.
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            68999999999888777665555555666555554

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=90.89  E-value=0.21  Score=32.28  Aligned_cols=35  Identities=29%  Similarity=0.507  Sum_probs=27.7

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccc
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSK   78 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~   78 (220)
                      ++|.|+|+|.+|..++..+...|.  +++.++.++++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~   38 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAK   38 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccch
Confidence            578899999999988877666664  78888877664

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.87  E-value=0.13  Score=37.22  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=25.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      .|+|+|+|.+|++++.-+...|. +|+++++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            48999999999999877667786 68888765

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.84  E-value=0.058  Score=35.00  Aligned_cols=89  Identities=15%  Similarity=0.138  Sum_probs=51.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHC---CCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAM---GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~---g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      +|-|+|+ |-+|+-.++++..+   ..++..+..+.......  ....... ...+.+.  ....+.|++|-|.+.....
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i--~~~~~~~-~~~~~~~--~~~~~~d~vf~a~p~~~s~   78 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM--GFAESSL-RVGDVDS--FDFSSVGLAFFAAAAEVSR   78 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE--EETTEEE-ECEEGGG--CCGGGCSEEEECSCHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce--eeccccc-hhccchh--hhhccceEEEecCCcchhh
Confidence            5889998 99999999988643   34777665554322111  0111111 0000000  1113789999999877544


Q ss_pred             HHHHhccccCCEEEEeCC
Q 027664          121 MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~  138 (220)
                      ...-....++.+++..+.
T Consensus        79 ~~~~~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          79 AHAERARAAGCSVIDLSG   96 (144)
T ss_dssp             HHHHHHHHTTCEEEETTC
T ss_pred             hhccccccCCceEEeech
Confidence            555556666777776654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.76  E-value=0.43  Score=32.89  Aligned_cols=94  Identities=19%  Similarity=0.191  Sum_probs=55.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHC--CCeEEEEeCCccchHHHH---HHcCCC--EEEcCCC-HHHHHHhc-----CCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAV---ERLGAD--SFLVSRD-QDEMQAAM-----GTM  107 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~--g~~vi~~~~~~~~~~~~~---~~~g~~--~~~~~~~-~~~~~~~~-----~~~  107 (220)
                      .+.++||-+|++ .|..++.+|+++  +.+++.++..++..+.+.   +..|..  ..+-..+ .+.+.++.     +.|
T Consensus        55 ~kpk~ILEiGt~-~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          55 YSPSLVLELGAY-CGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             HCCSEEEEECCT-TSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             hCCCEEEEEccC-chhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            345789999975 377778888875  569999999876554442   334542  1122223 22222221     369


Q ss_pred             cEEEEcCCCccc-----HHHHHhccccCCEEEE
Q 027664          108 DGIIDTVSAVHP-----LMPLIGLLKSQGKLVL  135 (220)
Q Consensus       108 d~v~d~~g~~~~-----~~~~~~~l~~~G~~v~  135 (220)
                      |++|--......     +...++.+++||.++.
T Consensus       134 D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         134 DMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            988743322211     3445678999997664

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=90.76  E-value=0.33  Score=31.09  Aligned_cols=36  Identities=11%  Similarity=0.239  Sum_probs=28.6

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccchH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKS   80 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~~~   80 (220)
                      +|.|+|+|.+|..++..+...+.  ++...+.++++.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~   39 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ   39 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence            57889999999998888777774  7888887776543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=90.65  E-value=0.039  Score=37.91  Aligned_cols=90  Identities=17%  Similarity=0.099  Sum_probs=54.1

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcC-----
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTV-----  114 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~-----  114 (220)
                      +.++.+||-+|||. |..+..+     .+++.++.++...+.+ ++-+...+.. .-. .+....+.||+|+..-     
T Consensus        34 ~~~~~~vLDiGcG~-G~~~~~~-----~~~~giD~s~~~~~~a-~~~~~~~~~~-d~~-~l~~~~~~fD~I~~~~~l~h~  104 (208)
T d1vlma_          34 LLPEGRGVEIGVGT-GRFAVPL-----KIKIGVEPSERMAEIA-RKRGVFVLKG-TAE-NLPLKDESFDFALMVTTICFV  104 (208)
T ss_dssp             HCCSSCEEEETCTT-STTHHHH-----TCCEEEESCHHHHHHH-HHTTCEEEEC-BTT-BCCSCTTCEEEEEEESCGGGS
T ss_pred             hCCCCeEEEECCCC-ccccccc-----ceEEEEeCChhhcccc-cccccccccc-ccc-ccccccccccccccccccccc
Confidence            35667899999863 6555444     3567888887766555 4445543322 111 1111123699987432     


Q ss_pred             CCc-ccHHHHHhccccCCEEEEeCC
Q 027664          115 SAV-HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       115 g~~-~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      ..+ ..++.+.+.|++||+++....
T Consensus       105 ~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_         105 DDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccchhhhhhcCCCCceEEEEec
Confidence            221 246788899999999987653

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.60  E-value=0.17  Score=33.06  Aligned_cols=31  Identities=32%  Similarity=0.280  Sum_probs=24.9

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      .+|+|+|+|.+|.-++..++. +.+|+++.+.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEecc
Confidence            479999999999998877654 6688888754

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=90.00  E-value=0.35  Score=31.22  Aligned_cols=88  Identities=18%  Similarity=0.152  Sum_probs=46.6

Q ss_pred             EEEEEcc-chhHHHHHHHHH-HC---CCeEEEEeCCccchHHHHHHcCCCEE--EcCCCHHHHHHhcCCccEEEEcCCCc
Q 027664           45 HVGVVGL-GGLGHVAVKFAK-AM---GVKVTVISTSPSKKSEAVERLGADSF--LVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~-~~---g~~vi~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~d~v~d~~g~~  117 (220)
                      +|-|+|+ |-+|+-.++++. +.   ..++.....+.......  .++.+..  ....+.    ......|++|-|+++.
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~--~~~~~~~~~~~~~~~----~~~~~~DvvF~alp~~   75 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAP--NFGKDAGMLHDAFDI----ESLKQLDAVITCQGGS   75 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCC--CSSSCCCBCEETTCH----HHHTTCSEEEECSCHH
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccccc--ccCCcceeeecccch----hhhccccEEEEecCch
Confidence            5789998 999999998553 22   34666555443221110  1111111  111111    1124789999999987


Q ss_pred             ccHHHHHhccccCC--EEEEeCC
Q 027664          118 HPLMPLIGLLKSQG--KLVLLGA  138 (220)
Q Consensus       118 ~~~~~~~~~l~~~G--~~v~~g~  138 (220)
                      ...+..-..+..+-  .++..+.
T Consensus        76 ~s~~~~~~l~~~g~~~~VIDlSs   98 (147)
T d1mb4a1          76 YTEKVYPALRQAGWKGYWIDAAS   98 (147)
T ss_dssp             HHHHHHHHHHHTTCCSEEEESSS
T ss_pred             HHHHHhHHHHHcCCceEEEeCCc
Confidence            54444444444442  3565543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=89.91  E-value=0.3  Score=35.95  Aligned_cols=98  Identities=15%  Similarity=0.065  Sum_probs=57.6

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHc---CC---CE-EEcCCCHHHHHHhc---CCc
Q 027664           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL---GA---DS-FLVSRDQDEMQAAM---GTM  107 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~---g~---~~-~~~~~~~~~~~~~~---~~~  107 (220)
                      .+.+|++||=..+|. |...+.++ ..|+ +|+.++.++...+.+.+.+   |.   .. ++..+-.+.++...   ..|
T Consensus       141 ~~~~g~~VLdlf~~~-G~~sl~aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f  218 (317)
T d2b78a2         141 GSAAGKTVLNLFSYT-AAFSVAAA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY  218 (317)
T ss_dssp             TTTBTCEEEEETCTT-THHHHHHH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HhhCCCceeecCCCC-cHHHHHHH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence            367899999886543 33333333 3577 8999999987666554433   22   11 23222234444432   369


Q ss_pred             cEEEEc---CCC-c-----------ccHHHHHhccccCCEEEEeCC
Q 027664          108 DGIIDT---VSA-V-----------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       108 d~v~d~---~g~-~-----------~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      |+||--   .+. .           ..+..+++++++||.++.+..
T Consensus       219 D~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         219 DIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             EEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            998731   111 0           134557789999999998754

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.74  E-value=1.3  Score=30.29  Aligned_cols=109  Identities=19%  Similarity=0.285  Sum_probs=59.8

Q ss_pred             hhhhhhhHHHh-hcCCCCCCEEEEE-cc---chhHHHHHHHHHHCCCeEEEEeCCccchHHH------HHHcCCCEEEcC
Q 027664           26 AGITVYSPLRF-YGLDKPGMHVGVV-GL---GGLGHVAVKFAKAMGVKVTVISTSPSKKSEA------VERLGADSFLVS   94 (220)
Q Consensus        26 ~~~ta~~~l~~-~~~~~~~~~vlI~-G~---g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~------~~~~g~~~~~~~   94 (220)
                      ++..+++.+.+ ... ....+|+|. |.   |+=|+.+++.++..|.+|.++...+.+....      .++++...+ +.
T Consensus        23 Ag~~~a~~i~~~~~~-~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  100 (211)
T d2ax3a2          23 AGISVVLAMEEELGN-LSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVV-EQ  100 (211)
T ss_dssp             HHHHHHHHHHHHHSC-CTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEE-SC
T ss_pred             HHHHHHHHHHHhccc-ccCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccCCcHHHHHHHHHHHcCCccc-cc
Confidence            33344444443 333 345667765 53   5667888888888999887776654432222      223444322 22


Q ss_pred             CCHHHHHHhcCCccEEEEcC-CCc------ccHHHHHhccccC-CEEEEeCCCC
Q 027664           95 RDQDEMQAAMGTMDGIIDTV-SAV------HPLMPLIGLLKSQ-GKLVLLGAPE  140 (220)
Q Consensus        95 ~~~~~~~~~~~~~d~v~d~~-g~~------~~~~~~~~~l~~~-G~~v~~g~~~  140 (220)
                      .++.    ....+|+++|+. |..      ..+...++.+... ..++.+..++
T Consensus       101 ~~~~----~~~~~dlIIDal~G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiPS  150 (211)
T d2ax3a2         101 FEPS----ILNEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPS  150 (211)
T ss_dssp             CCGG----GGGGCSEEEEESCCTTCCSCCCHHHHHHHHHHHHSCCEEEEESSCT
T ss_pred             cccc----cccCceEEEEecccCCccccchHHHHHHHHHHHhhccceeeeccCc
Confidence            2211    123689999998 331      1245566666554 4566666554

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.39  E-value=1.1  Score=30.50  Aligned_cols=94  Identities=19%  Similarity=0.133  Sum_probs=59.3

Q ss_pred             CCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHH---HcCCC-E-EEcCCCHHHHHHhcC-CccEEEEcCC
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVE---RLGAD-S-FLVSRDQDEMQAAMG-TMDGIIDTVS  115 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~---~~g~~-~-~~~~~~~~~~~~~~~-~~d~v~d~~g  115 (220)
                      +..+|=+|+| .|..++.+|+.. ...+++++.+......+.+   ..+.+ . ++..+..+....+.. .+|.|+-...
T Consensus        32 ~plvLdIGcG-~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSG-KGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCT-TSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEecc-CCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence            4566778987 489999999986 5699999999876555433   34442 2 222222222222222 6787765554


Q ss_pred             Cc--------------ccHHHHHhccccCCEEEEeC
Q 027664          116 AV--------------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       116 ~~--------------~~~~~~~~~l~~~G~~v~~g  137 (220)
                      .+              ..++.+.+.|++||.+....
T Consensus       111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            32              24667888999999997753

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=89.22  E-value=0.65  Score=30.60  Aligned_cols=73  Identities=11%  Similarity=0.192  Sum_probs=41.8

Q ss_pred             CCCEEEEEccchhHHH--HHHHHHHC-C---CeEEEEeCCccchHHH---H----HHcCCC-EEEcCCCHHHHHHhcCCc
Q 027664           42 PGMHVGVVGLGGLGHV--AVKFAKAM-G---VKVTVISTSPSKKSEA---V----ERLGAD-SFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~--~~~la~~~-g---~~vi~~~~~~~~~~~~---~----~~~g~~-~~~~~~~~~~~~~~~~~~  107 (220)
                      +.-+|.|+|+|++|..  ...+++.. .   .+++..+.++++.+..   .    ...+.+ .+....+   ..+...+.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~eal~~A   78 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTD---PEEAFTDV   78 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESC---HHHHHSSC
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCC---hhhccCCC
Confidence            3456889999877643  33444332 2   3788888887765421   1    122332 2222222   23444689


Q ss_pred             cEEEEcCCCc
Q 027664          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~v~d~~g~~  117 (220)
                      |+|+.++|-.
T Consensus        79 D~Vvitag~~   88 (167)
T d1u8xx1          79 DFVMAHIRVG   88 (167)
T ss_dssp             SEEEECCCTT
T ss_pred             CEEEECCCcC
Confidence            9999999864

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=89.11  E-value=1.1  Score=33.77  Aligned_cols=64  Identities=14%  Similarity=0.055  Sum_probs=41.2

Q ss_pred             hhhHHHhh-cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCC--ccchHHHHHHcCCCEEEc
Q 027664           30 VYSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS--PSKKSEAVERLGADSFLV   93 (220)
Q Consensus        30 a~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~--~~~~~~~~~~~g~~~~~~   93 (220)
                      |.+.+..+ ..++++.+|+-..+|..|.+++..++.+|.+++++...  +..+....+.+|++.+..
T Consensus       130 A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~  196 (382)
T d1wkva1         130 AVEIISRLSRRVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVD  196 (382)
T ss_dssp             HHHHHHHHTTTSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHhccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeec
Confidence            44444433 33567766444456999999999999999976666543  223333447889876653

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.97  E-value=0.31  Score=33.83  Aligned_cols=35  Identities=11%  Similarity=0.127  Sum_probs=29.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHH--------------------CCC-eEEEEeCCc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAKA--------------------MGV-KVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~~--------------------~g~-~vi~~~~~~   76 (220)
                      .|++|+|+|+|.+++-++..|..                    .|+ +|.++.+..
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            58999999999999999988766                    477 777777665

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=88.86  E-value=1.7  Score=31.08  Aligned_cols=101  Identities=20%  Similarity=0.295  Sum_probs=61.9

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCC--ccchHHHHHHcCCCEEEcCCCH------------------
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS--PSKKSEAVERLGADSFLVSRDQ------------------   97 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~--~~~~~~~~~~~g~~~~~~~~~~------------------   97 (220)
                      +.+.++.+|+...+|..|++++..++.+|.+++++...  +..+....+.+|++.++...+.                  
T Consensus        55 g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~~~  134 (292)
T d2bhsa1          55 GEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEG  134 (292)
T ss_dssp             TSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHTSS
T ss_pred             CCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccccc
Confidence            33456666655667999999999999999965555542  3334445578898654422220                  


Q ss_pred             ---------H-----------HH-HHhcCCccEEEEcCCCcccH---HHHHhccccCCEEEEeCC
Q 027664           98 ---------D-----------EM-QAAMGTMDGIIDTVSAVHPL---MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus        98 ---------~-----------~~-~~~~~~~d~v~d~~g~~~~~---~~~~~~l~~~G~~v~~g~  138 (220)
                               .           ++ ++..+.+|+++-++|+...+   ...++...+..+++.+..
T Consensus       135 ~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep  199 (292)
T d2bhsa1         135 KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQP  199 (292)
T ss_dssp             EECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEE
T ss_pred             cccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEecc
Confidence                     0           00 11112589999998876433   344555667777776654

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=88.79  E-value=0.84  Score=32.42  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=23.6

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCC-eEEEEe
Q 027664           46 VGVVGL-GGLGHVAVKFAKAMGV-KVTVIS   73 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~la~~~g~-~vi~~~   73 (220)
                      |||.|+ |-+|..++..+...|. +|++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            789997 9999999988777797 688875

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=88.79  E-value=0.19  Score=36.77  Aligned_cols=72  Identities=17%  Similarity=0.153  Sum_probs=41.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCC------eEEEEeCCc--cchHHHHHHcC----CCEE-EcCCCHHHHHHhcCCccEE
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGV------KVTVISTSP--SKKSEAVERLG----ADSF-LVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~------~vi~~~~~~--~~~~~~~~~~g----~~~~-~~~~~~~~~~~~~~~~d~v  110 (220)
                      +|||.|+ |-+|..++..+...|.      +++..+...  .+.... ....    .+.+ .|..+..........+|.|
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL-APVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGG-GGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHh-hhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            6899997 9999999987776654      455554321  111111 1121    1211 2233344444555689999


Q ss_pred             EEcCCCc
Q 027664          111 IDTVSAV  117 (220)
Q Consensus       111 ~d~~g~~  117 (220)
                      +.+++..
T Consensus        81 i~~a~~~   87 (322)
T d1r6da_          81 VHFAAES   87 (322)
T ss_dssp             EECCSCC
T ss_pred             Eeecccc
Confidence            9887653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=88.65  E-value=0.16  Score=37.55  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=28.0

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      |||+|+|.-|+.++.-|...|.+|+++...+.
T Consensus        10 VlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~   41 (330)
T d1neka2          10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFP   41 (330)
T ss_dssp             CEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            79999999999999888888999999987643

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.60  E-value=0.24  Score=31.85  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=24.6

Q ss_pred             CEEEEEc-cchhHHHHHHHHHHCCC--eEEEEeC
Q 027664           44 MHVGVVG-LGGLGHVAVKFAKAMGV--KVTVIST   74 (220)
Q Consensus        44 ~~vlI~G-~g~~G~~~~~la~~~g~--~vi~~~~   74 (220)
                      .+|.|+| +|.+|..++..+...+.  +++..+.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            3688999 59999999988888776  6776664

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.51  E-value=2.3  Score=28.47  Aligned_cols=98  Identities=17%  Similarity=0.205  Sum_probs=56.1

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHC-CCeEEEEeCCccchHHHHHHc---CCCEEEcCCCH---HH-HHHh-cCCccEE
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERL---GADSFLVSRDQ---DE-MQAA-MGTMDGI  110 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~-g~~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~---~~-~~~~-~~~~d~v  110 (220)
                      +++++.++=.++|. |-.+-.+++.. +.+|++++.+++..+.+.+.+   +....+-....   .. +... .+.+|.|
T Consensus        21 ~~~~~~~lD~t~G~-Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgI   99 (192)
T d1m6ya2          21 PEDEKIILDCTVGE-GGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI   99 (192)
T ss_dssp             CCTTCEEEETTCTT-SHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCCEEEEecCCC-cHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCccee
Confidence            57887654444454 43344555544 569999999998776665543   32222222222   22 2222 2478887


Q ss_pred             EEcCCCc---------------ccHHHHHhccccCCEEEEeCC
Q 027664          111 IDTVSAV---------------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       111 ~d~~g~~---------------~~~~~~~~~l~~~G~~v~~g~  138 (220)
                      +--.|-.               ..+..+.+.++++|+++.+..
T Consensus       100 l~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f  142 (192)
T d1m6ya2         100 LMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF  142 (192)
T ss_dssp             EEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred             eeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence            5333321               235667788999999887754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=88.50  E-value=0.073  Score=35.65  Aligned_cols=29  Identities=28%  Similarity=0.288  Sum_probs=23.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCe--EEEEe
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVK--VTVIS   73 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~--vi~~~   73 (220)
                      +|+|+|+|.+|+-++..++..|.+  ++...
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence            489999999999999888888864  44443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.30  E-value=0.31  Score=32.81  Aligned_cols=32  Identities=19%  Similarity=0.069  Sum_probs=25.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~   76 (220)
                      +|+|+|+|.+|+.++.-++..+.  +|+++.+.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            68999999999999887776644  788777543

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.27  E-value=2.4  Score=28.09  Aligned_cols=134  Identities=16%  Similarity=0.118  Sum_probs=73.0

Q ss_pred             CEEEEEccchhHHHH--HHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCH-HHHHHhcCCccEEEEcCCCcccH
Q 027664           44 MHVGVVGLGGLGHVA--VKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ-DEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~--~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      ..-+|+|+|+.|+|-  .+-++..|.+++.+....-...+. ..-..+..+...+. +....+.+..|.++-.-|+-.++
T Consensus        34 g~~lv~GGG~~GlMga~a~ga~~~gg~viGv~~~~l~~~e~-~~~~~~~~~~~~~~~~Rk~~m~~~sdafIvlPGG~GTL  112 (181)
T d1ydhb_          34 KIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEI-SGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTM  112 (181)
T ss_dssp             TCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHC-CSCCCSEEEEESSHHHHHHHHHHHCSEEEECSCSHHHH
T ss_pred             CCeEEECCCchHHHHHHHHhHhhcCCcccccchhhhhhhhc-CCcccCcceeeccHHHHHHHHHHhCeeEEEeCCccchH
Confidence            345779887777654  456777888999887663211111 11123444444442 23333444668888777776566


Q ss_pred             HHHHhcc------ccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHH-HHHHHcCCCccce-E-Eeeccc
Q 027664          121 MPLIGLL------KSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEM-IDFAAKHNIRADI-E-VIPADY  191 (220)
Q Consensus       121 ~~~~~~l------~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~g~i~~~~-~-~~~~~~  191 (220)
                      +++...+      ...-.++.+..                       .+.++.+... -.++++|-+.+.. + ..=.++
T Consensus       113 dEl~e~l~l~ql~~~~kpiiiln~-----------------------~gfw~~l~~~l~~~~~~g~i~~~~~~~~~~~d~  169 (181)
T d1ydhb_         113 EELLEMITWSQLGIHKKTVGLLNV-----------------------DGYYNNLLALFDTGVEEGFIKPGARNIVVSAPT  169 (181)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEEECG-----------------------GGTTHHHHHHHHHHHHHTSSCHHHHTTEEEESS
T ss_pred             HHHHHHHHHHHhcccCCCeEEEec-----------------------CccHHHHHHHHHHHHHCCCCCHHHcCeEEEeCC
Confidence            6665544      12222333211                       0122333333 3455677777654 3 444578


Q ss_pred             HHHHHHHHHc
Q 027664          192 VNTAMERLAK  201 (220)
Q Consensus       192 ~~~a~~~~~~  201 (220)
                      ++|+++.+++
T Consensus       170 ~ee~~~~l~~  179 (181)
T d1ydhb_         170 AKELMEKMEE  179 (181)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988864

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.24  E-value=2.6  Score=28.44  Aligned_cols=91  Identities=14%  Similarity=0.098  Sum_probs=54.2

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCeEEEEeCCccc---------hHHHHHHcCCCEEE--cCCCHHHHHHhcC-CccEEEE
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK---------KSEAVERLGADSFL--VSRDQDEMQAAMG-TMDGIID  112 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~---------~~~~~~~~g~~~~~--~~~~~~~~~~~~~-~~d~v~d  112 (220)
                      ++++.|.+.+|..+++.+...|.+|..+...+++         ..+++++.+.....  +..+++.++.+.. .+|+++-
T Consensus         2 kiv~~~~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~~~Dlii~   81 (203)
T d2blna2           2 KTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFS   81 (203)
T ss_dssp             EEEEEECHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEEE
T ss_pred             eEEEEecCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhhcccceee
Confidence            5778898889999999888889988766643322         34455666765332  1123334444433 8999987


Q ss_pred             cCCCcccHHHHHhccccCCEEEEe
Q 027664          113 TVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       113 ~~g~~~~~~~~~~~l~~~G~~v~~  136 (220)
                      +.... .+..-+-...+.|.+-.-
T Consensus        82 ~g~~~-ii~~~il~~~~~~~iN~H  104 (203)
T d2blna2          82 FYYRH-LIYDEILQLAPAGAFNLH  104 (203)
T ss_dssp             ESCCS-CCCHHHHTTCTTCEEEEE
T ss_pred             eeccc-chhcccchhhHHHHHHHh
Confidence            76543 343333333355665443

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.08  E-value=0.43  Score=32.87  Aligned_cols=35  Identities=17%  Similarity=0.348  Sum_probs=28.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHH--------------------HCCC-eEEEEeCCc
Q 027664           42 PGMHVGVVGLGGLGHVAVKFAK--------------------AMGV-KVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~la~--------------------~~g~-~vi~~~~~~   76 (220)
                      .|++|+|+|+|.+++-++.++.                    ..|+ +|.++.+..
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            5899999999999999887665                    5677 788787654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=88.08  E-value=0.36  Score=32.03  Aligned_cols=73  Identities=22%  Similarity=0.380  Sum_probs=43.3

Q ss_pred             CCCEEEEEccchhHHHHH---HHHHH--C-CCeEEEEeCCccchHHH-------HHHcCCCEEE-cCCCHHHHHHhcCCc
Q 027664           42 PGMHVGVVGLGGLGHVAV---KFAKA--M-GVKVTVISTSPSKKSEA-------VERLGADSFL-VSRDQDEMQAAMGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~---~la~~--~-g~~vi~~~~~~~~~~~~-------~~~~g~~~~~-~~~~~~~~~~~~~~~  107 (220)
                      |+-+|.|+|+|.+|....   .+++.  . +.+++.++.++++.+..       ...++...-+ ...+   .++...+.
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td---~~eaL~da   77 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMN---LDDVIIDA   77 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESC---HHHHHTTC
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCC---hhhcccCC
Confidence            456899999999985432   23332  2 34899999987754321       1223332222 1122   33444689


Q ss_pred             cEEEEcCCCc
Q 027664          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~v~d~~g~~  117 (220)
                      |+|+.+++..
T Consensus        78 d~Vv~~~~~g   87 (171)
T d1obba1          78 DFVINTAMVG   87 (171)
T ss_dssp             SEEEECCCTT
T ss_pred             CeEeeecccc
Confidence            9999998765

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=87.60  E-value=0.25  Score=33.78  Aligned_cols=66  Identities=17%  Similarity=0.204  Sum_probs=39.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHH---cCCCEEEcCCCHHHHHHhcCCccEEE
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVER---LGADSFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~d~v~  111 (220)
                      -.|++||=.|+|. |.+++.++ ..|+ +|++++.++.....+.+.   ++.+.-+-..+   ...+.+.||+||
T Consensus        45 l~g~~vLDlg~Gt-G~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d---~~~~~~~fD~Vi  114 (201)
T d1wy7a1          45 IEGKVVADLGAGT-GVLSYGAL-LLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGD---VSEFNSRVDIVI  114 (201)
T ss_dssp             STTCEEEEETCTT-CHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESC---GGGCCCCCSEEE
T ss_pred             CCCCEEEECcCcc-hHHHHHHH-HcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECc---hhhhCCcCcEEE
Confidence            4688999998763 54455544 4676 899999998766555443   33322221112   122345788887

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.48  E-value=0.26  Score=35.96  Aligned_cols=35  Identities=29%  Similarity=0.287  Sum_probs=27.5

Q ss_pred             CCEEEEEccchhHHHHHHHHH-H-CCCeEEEEeCCcc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAK-A-MGVKVTVISTSPS   77 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~-~-~g~~vi~~~~~~~   77 (220)
                      +..|+|+|+|+.|+.++..+. . .|.+|+++...+.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            344999999999999986554 3 5889999987653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.30  E-value=0.21  Score=38.43  Aligned_cols=34  Identities=32%  Similarity=0.447  Sum_probs=29.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHCCC-eEEEEeCCc
Q 027664           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~~   76 (220)
                      +.+|||+|+|++|..++..+-..|. ++.+++...
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            3569999999999999999889999 888887654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.89  E-value=0.55  Score=30.00  Aligned_cols=34  Identities=15%  Similarity=0.235  Sum_probs=26.8

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC--eEEEEeCCccc
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSK   78 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~--~vi~~~~~~~~   78 (220)
                      +|.|+|+|.+|..++..+...|.  +++.++.++++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~   37 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDL   37 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccch
Confidence            57889999999998877766665  78888877655

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=86.29  E-value=3.6  Score=28.12  Aligned_cols=94  Identities=17%  Similarity=0.124  Sum_probs=61.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHH------CCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcC
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKA------MGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~------~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~  114 (220)
                      +..++|-|+|=|+-|.+-++-+|-      .|.+|++--+..++....++.-|.+.. + ...-.+.+.....|+|.-.+
T Consensus        42 kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~-~-~~v~~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2          42 KGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEE-N-GTLGDMWETISGSDLVLLLI  119 (226)
T ss_dssp             TTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGG-G-TCEEEHHHHHHTCSEEEECS
T ss_pred             cCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccC-C-CcccCHHHHHhhCCEEEEec
Confidence            444899999999999999999988      456788877776654444456665310 0 00011334445789999888


Q ss_pred             CCc---ccHHHHHhccccCCEEEEe
Q 027664          115 SAV---HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       115 g~~---~~~~~~~~~l~~~G~~v~~  136 (220)
                      +..   +.++.....|++|..+...
T Consensus       120 PDe~Q~~vy~~I~p~Lk~G~~L~Fa  144 (226)
T d1qmga2         120 SDSAQADNYEKVFSHMKPNSILGLS  144 (226)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEES
T ss_pred             chHHHHHHHHHHHHhcCCCceeeec
Confidence            864   1344555678888777664

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.19  E-value=0.056  Score=37.72  Aligned_cols=24  Identities=21%  Similarity=0.174  Sum_probs=19.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCCCe
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGVK   68 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~~   68 (220)
                      +|+|+|+|.+|+.++..+...|.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC
Confidence            589999999999998766666643

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=86.03  E-value=0.64  Score=28.96  Aligned_cols=38  Identities=16%  Similarity=0.180  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      +-.|++|+|+|+|..+.-.+..+.....+|+.+.+.++
T Consensus        24 ~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          24 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             HhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            45789999999988887777777777779999998864

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.02  E-value=0.43  Score=35.18  Aligned_cols=30  Identities=30%  Similarity=0.326  Sum_probs=23.4

Q ss_pred             EEEEccchhHHHHH-HHHH---HCCCeEEEEeCC
Q 027664           46 VGVVGLGGLGHVAV-KFAK---AMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~-~la~---~~g~~vi~~~~~   75 (220)
                      |||+|+|+.|+.++ .+++   ..|++|+++...
T Consensus        24 VlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            89999999998775 4443   479999999854

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.49  E-value=0.22  Score=31.24  Aligned_cols=82  Identities=15%  Similarity=0.184  Sum_probs=49.1

Q ss_pred             CEEEEEccchhHHHHHHHHH-HCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhc-CCccEEEEcCCCcccHH
Q 027664           44 MHVGVVGLGGLGHVAVKFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-GTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~-~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~d~v~d~~g~~~~~~  121 (220)
                      .+|+|+|||..|.+++...+ ..|.++++..+.+.++.-  +...--.++...   .+.+.. +..++++-++... ..+
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G--~~I~Gi~V~~~~---~l~~~~~~~i~iai~~i~~~-~~~   77 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG--RPVRGGVIEHVD---LLPQRVPGRIEIALLTVPRE-AAQ   77 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT--CEETTEEEEEGG---GHHHHSTTTCCEEEECSCHH-HHH
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC--CEECCEEEecHH---HHHHHHhhcccEEEEeCCHH-HHH
Confidence            47999999999998776443 346677776665443211  122222344332   344433 3688888888865 356


Q ss_pred             HHHhccccCC
Q 027664          122 PLIGLLKSQG  131 (220)
Q Consensus       122 ~~~~~l~~~G  131 (220)
                      +..+.|...|
T Consensus        78 ~I~d~l~~~g   87 (126)
T d2dt5a2          78 KAADLLVAAG   87 (126)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            6666555544

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.15  E-value=1.9  Score=27.63  Aligned_cols=43  Identities=21%  Similarity=0.231  Sum_probs=30.7

Q ss_pred             CEEEEEccchhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcC
Q 027664           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG   87 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g   87 (220)
                      ++|-++|.|.+|...+.-+...|..+ +..++.++...+.+..+
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~   43 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFG   43 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHC
T ss_pred             CeEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcC
Confidence            46888999999998887666666544 56777766666655544

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=85.05  E-value=0.39  Score=34.73  Aligned_cols=30  Identities=27%  Similarity=0.328  Sum_probs=24.2

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      |||+|+|.-|+.++.-|...| +|+++...+
T Consensus        10 VvVVG~G~AGl~AA~~a~~~g-~V~llEK~~   39 (305)
T d1chua2          10 VLIIGSGAAGLSLALRLADQH-QVIVLSKGP   39 (305)
T ss_dssp             EEEECCSHHHHHHHHHHTTTS-CEEEECSSC
T ss_pred             EEEECccHHHHHHHHHhhcCC-CEEEEECCC
Confidence            889999999988887676656 898887664

>d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein YNL200c (YNU0 YEAST)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.03  E-value=1.8  Score=30.22  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             CCCEEEEE-cc---chhHHHHHHHHHHCCCeEEEEeCCcc-chHH------HHHHcCCCEEEcCCCHHHHHH-hcCCccE
Q 027664           42 PGMHVGVV-GL---GGLGHVAVKFAKAMGVKVTVISTSPS-KKSE------AVERLGADSFLVSRDQDEMQA-AMGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~-G~---g~~G~~~~~la~~~g~~vi~~~~~~~-~~~~------~~~~~g~~~~~~~~~~~~~~~-~~~~~d~  109 (220)
                      .+.+|+|+ |.   |+=|+.+++.++..|.+|.+...... +.+.      ..+..+.... ...+.+.... ....+|+
T Consensus        54 ~~~~vlil~G~GNNGGDGl~~Ar~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~  132 (243)
T d1jzta_          54 KGKHVFVIAGPGNNGGDGLVCARHLKLFGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPVL-SQDEGNWLEYLKPEKTLC  132 (243)
T ss_dssp             HTCEEEEEECSSHHHHHHHHHHHHHHHTTCCEEEECCCCCTTCHHHHHHHHHHHHTTCCEE-CSSTTCGGGGGSTTTEEE
T ss_pred             CCCeEEEEECCCCccHHHHHHHHHHHhcCCeeEEEEeCCCcCCHHHHHHHHHHHHCCCcee-cccccchhhccccccccE
Confidence            34677775 53   56678888999999997666654432 2111      1123343322 2222222211 1237999


Q ss_pred             EEEcCCC-------cccHHHHHhccc---cCCEEEEeCCCCC
Q 027664          110 IIDTVSA-------VHPLMPLIGLLK---SQGKLVLLGAPEK  141 (220)
Q Consensus       110 v~d~~g~-------~~~~~~~~~~l~---~~G~~v~~g~~~~  141 (220)
                      ++|+.-+       ...+..+++.+.   ....++.+..+++
T Consensus       133 iVDal~G~Gl~~~l~~~~~~li~~iN~~~~~~~vvSiDIPSG  174 (243)
T d1jzta_         133 IVDAIFGFSFKPPMREPFKGIVEELCKVQNIIPIVSVDVPTG  174 (243)
T ss_dssp             EEEESCCTTCCSSCCTTHHHHHHHHHHHTTTSCEEEESSCTT
T ss_pred             EEEeeecccccCcccHHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            9998743       112455555543   3456788877654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.89  E-value=2.2  Score=27.91  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=38.6

Q ss_pred             EEEEEccchhH--HHHHHHHHHC---CC-eEEEEeCCccc--hHHH-------HHHcCCC-EEEcCCCHHHHHHhcCCcc
Q 027664           45 HVGVVGLGGLG--HVAVKFAKAM---GV-KVTVISTSPSK--KSEA-------VERLGAD-SFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        45 ~vlI~G~g~~G--~~~~~la~~~---g~-~vi~~~~~~~~--~~~~-------~~~~g~~-~~~~~~~~~~~~~~~~~~d  108 (220)
                      +|.|+|+|.+|  .....+++..   +. +++..+.++++  .+.+       ...++.+ .+....+.   .+...+.|
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~---~~al~gaD   79 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDR---RRALDGAD   79 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCH---HHHHTTCS
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCc---hhhcCCCC
Confidence            57889987655  5555655543   22 77777776643  1111       1122332 22222222   23345899


Q ss_pred             EEEEcCCCc
Q 027664          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~v~d~~g~~  117 (220)
                      +|+.++|..
T Consensus        80 vVv~ta~~~   88 (169)
T d1s6ya1          80 FVTTQFRVG   88 (169)
T ss_dssp             EEEECCCTT
T ss_pred             EEEEccccC
Confidence            999999865

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=84.48  E-value=3.5  Score=28.02  Aligned_cols=72  Identities=18%  Similarity=0.203  Sum_probs=39.1

Q ss_pred             EEEEccchhHH--HHHHHH---HHCCCeEEEEeCCccc------hHHHHHHcCCCEEEcCCCH---HHHHHh-----cCC
Q 027664           46 VGVVGLGGLGH--VAVKFA---KAMGVKVTVISTSPSK------KSEAVERLGADSFLVSRDQ---DEMQAA-----MGT  106 (220)
Q Consensus        46 vlI~G~g~~G~--~~~~la---~~~g~~vi~~~~~~~~------~~~~~~~~g~~~~~~~~~~---~~~~~~-----~~~  106 (220)
                      ++..|..++|.  .++.+|   +..|.+|..+...-.|      +..+.+.+|.......+..   ..+.+.     .++
T Consensus        12 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~~~~   91 (211)
T d2qy9a2          12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARN   91 (211)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHHHHcC
Confidence            44567644553  223444   3457777777665544      3344556777655433322   122222     247


Q ss_pred             ccEE-EEcCCCc
Q 027664          107 MDGI-IDTVSAV  117 (220)
Q Consensus       107 ~d~v-~d~~g~~  117 (220)
                      +|+| +|+.|..
T Consensus        92 ~d~ilIDTaGr~  103 (211)
T d2qy9a2          92 IDVLIADTAGRL  103 (211)
T ss_dssp             CSEEEECCCCCG
T ss_pred             CCEEEeccCCCc
Confidence            8887 5999964

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.36  E-value=0.52  Score=32.62  Aligned_cols=31  Identities=29%  Similarity=0.318  Sum_probs=23.5

Q ss_pred             EEEEEccchhHHHHHHHHHHCC---CeEEEEeCC
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMG---VKVTVISTS   75 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g---~~vi~~~~~   75 (220)
                      +|+|+|+||-|+.++..|...|   .+|.++...
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            6899999999998887765444   467777753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.09  E-value=2.3  Score=26.24  Aligned_cols=63  Identities=22%  Similarity=0.223  Sum_probs=42.0

Q ss_pred             hhHHHhhcCCCCCCEEEEE-ccchhHHHHHHHHHHCCC-eEEEEeCCccchHHHHHHcCCCEEEcCC
Q 027664           31 YSPLRFYGLDKPGMHVGVV-GLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSR   95 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~-G~g~~G~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~   95 (220)
                      ...+...+ +..-+.+++. ..-..-.++.+.++.+|. ++++...+++.. ...+.+|++.++++.
T Consensus        55 ~~~l~~~~-i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~-~~l~~~G~d~vi~p~  119 (132)
T d1lssa_          55 IKTLEDAG-IEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYK-DVFERLGVDVVVSPE  119 (132)
T ss_dssp             HHHHHHTT-TTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHH-HHHHHTTCSEEECHH
T ss_pred             hhhhhhcC-hhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHH-HHHHHCCCCEEECHH
Confidence            34455554 5666655553 334556777888999998 677776666544 455889999998754

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.82  E-value=0.49  Score=32.49  Aligned_cols=29  Identities=31%  Similarity=0.300  Sum_probs=23.0

Q ss_pred             EEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGV-KVTVIST   74 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~-~vi~~~~   74 (220)
                      ++|+|+|+-|+.++..+...|. +|.++..
T Consensus         6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             EEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            6788999999999888777776 5666654

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.77  E-value=1.9  Score=26.52  Aligned_cols=90  Identities=20%  Similarity=0.168  Sum_probs=58.3

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc
Q 027664           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      +.++.+|+|.|- |..|....+.++..|-+++.-+.+...-+..   .|. -++|.- .+.+++ + ++|.-+-.++.+.
T Consensus         4 i~k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~~---~gi-PVf~tV-~eAv~~-~-~~d~SvIfVPp~~   76 (121)
T d1oi7a1           4 VNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEV---LGV-PVYDTV-KEAVAH-H-EVDASIIFVPAPA   76 (121)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEE---TTE-EEESSH-HHHHHH-S-CCSEEEECCCHHH
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcEE---ECC-chHhhH-HHHHHh-c-CCeEEEEeeCHHH
Confidence            467789999995 9999999999999999998888776433221   121 233211 122222 2 6777777777665


Q ss_pred             cHHHHHhccccCCEEEEe
Q 027664          119 PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       119 ~~~~~~~~l~~~G~~v~~  136 (220)
                      ..+.++.++..+=+++.+
T Consensus        77 a~dAi~EAi~agI~liv~   94 (121)
T d1oi7a1          77 AADAALEAAHAGIPLIVL   94 (121)
T ss_dssp             HHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHhCCCcEEEE
Confidence            667777777776554443

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.69  E-value=0.67  Score=31.66  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=28.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCc
Q 027664           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~   76 (220)
                      -.|++|+|+|+|..|.-++..+...+++++.+.++.
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            378999999999888877776666678877777664

>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.66  E-value=1.4  Score=29.30  Aligned_cols=34  Identities=26%  Similarity=0.303  Sum_probs=27.8

Q ss_pred             CCCCCEEEEE----ccchhHHHHHHHHHHCCCeEEEEe
Q 027664           40 DKPGMHVGVV----GLGGLGHVAVKFAKAMGVKVTVIS   73 (220)
Q Consensus        40 ~~~~~~vlI~----G~g~~G~~~~~la~~~g~~vi~~~   73 (220)
                      +.+|++|||+    ..|+.-.+++++++..|++|+.+.
T Consensus       115 i~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvg~~  152 (178)
T d1zn7a1         115 LEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECV  152 (178)
T ss_dssp             SCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCeEEEehhhhhhchHHHHHHHHHHHCCCEEEEEE
Confidence            5689999996    458888999999999999876443

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=83.48  E-value=1.3  Score=32.36  Aligned_cols=108  Identities=19%  Similarity=0.200  Sum_probs=64.8

Q ss_pred             hhhHHHhhcCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc--chHHHHHHcCCCEEEcCCCHHH--------
Q 027664           30 VYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS--KKSEAVERLGADSFLVSRDQDE--------   99 (220)
Q Consensus        30 a~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~--------   99 (220)
                      |++.+.....-.+...|+...+|..|.+++..++..|.+++++.....  .+....+.+|++.++...+.+.        
T Consensus        62 a~~~i~~~~~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~  141 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIEL  141 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhhhh
Confidence            445555443223444555556699999999999999997666665433  3344457788876654333110        


Q ss_pred             ---------------------------HHHhcCCccEEEEcCCCcccH---HHHHhccccCCEEEEeC
Q 027664          100 ---------------------------MQAAMGTMDGIIDTVSAVHPL---MPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       100 ---------------------------~~~~~~~~d~v~d~~g~~~~~---~~~~~~l~~~G~~v~~g  137 (220)
                                                 +.+-.+.+|++|-++|+...+   -..+..+.+..+++.+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve  209 (331)
T d1tdja1         142 SQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVE  209 (331)
T ss_dssp             HHHHCCEECCSSCCHHHHHHHHHHHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             hhcCCCccccccCChHHhhhhhhHHHHHHHhcCCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEec
Confidence                                       000012689999999886433   33444555666777664

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.46  E-value=2.5  Score=31.24  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=38.4

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc--chHHHHHHcCCCEEE
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS--KKSEAVERLGADSFL   92 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~--~~~~~~~~~g~~~~~   92 (220)
                      +.+++++.|+...+|..|.+++..|+.+|.+.+++.....  .+....+.+|++.+.
T Consensus        92 g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~  148 (355)
T d1jbqa_          92 GTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVR  148 (355)
T ss_dssp             TCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEE
T ss_pred             CCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEE
Confidence            3345667666666799999999999999997666664432  233344788987554

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=83.38  E-value=2.7  Score=25.67  Aligned_cols=88  Identities=18%  Similarity=0.139  Sum_probs=57.6

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhcCCccEEEEcCCCcc
Q 027664           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~  118 (220)
                      +.++.+|+|.|- |.-|....+..+..|-+|+.-+.+...-+..   +|. -++|.- .+.+++ + ++|.-+-.++.+.
T Consensus         3 i~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~~---~gi-PVf~sV-~eAv~~-~-~~~~SvIfVPp~~   75 (119)
T d2nu7a1           3 IDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTH---LGL-PVFNTV-REAVAA-T-GATASVIYVPAPF   75 (119)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEEE---TTE-EEESSH-HHHHHH-H-CCCEEEECCCGGG
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCccc---CCC-chhhHH-HHHHHH-h-CCCeEEEeccHHH
Confidence            467789999996 9999999999999999998777775433221   221 233321 122222 2 5677777777766


Q ss_pred             cHHHHHhccccCCEEE
Q 027664          119 PLMPLIGLLKSQGKLV  134 (220)
Q Consensus       119 ~~~~~~~~l~~~G~~v  134 (220)
                      ..+.++.++..+=+++
T Consensus        76 a~dA~~EAi~agI~~i   91 (119)
T d2nu7a1          76 CKDSILEAIDAGIKLI   91 (119)
T ss_dssp             HHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHCCCCEE
Confidence            6677777777764443

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.98  E-value=0.34  Score=31.97  Aligned_cols=82  Identities=18%  Similarity=0.189  Sum_probs=46.1

Q ss_pred             EEEEEccchhHHHHHHHHHHCC-Ce-EEEEeCCccchHHHHHHcCCCEEEcCCCHHHHHHhc--CCccEEEEcCCCcccH
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMG-VK-VTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAVHPL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g-~~-vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~d~v~d~~g~~~~~  120 (220)
                      +|.|+|+|.+|...+..++... .. +.+++....+.  . .....   ....+   .+++.  ..+|+|+-|+......
T Consensus         9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~--~-~~~~~---~~~~~---~~e~l~~~~iD~V~I~tp~~~H~   79 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE--L-GSLDE---VRQIS---LEDALRSQEIDVAYICSESSSHE   79 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC--C-CEETT---EEBCC---HHHHHHCSSEEEEEECSCGGGHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHH--H-HHhhc---cCcCC---HHHHHhCCCcchhhhcccccccc
Confidence            6899999999987776655432 22 22222221111  1 01111   11112   22322  3799999999988777


Q ss_pred             HHHHhccccCCEEEEe
Q 027664          121 MPLIGLLKSQGKLVLL  136 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~  136 (220)
                      +.+..++..+-. |.+
T Consensus        80 ~~~~~al~~gk~-V~~   94 (172)
T d1lc0a1          80 DYIRQFLQAGKH-VLV   94 (172)
T ss_dssp             HHHHHHHHTTCE-EEE
T ss_pred             cccccccccchh-hhc
Confidence            788888877655 444

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=82.97  E-value=3.1  Score=28.18  Aligned_cols=75  Identities=25%  Similarity=0.286  Sum_probs=40.5

Q ss_pred             CCEEEEEccchhHHHH--HHHH---HHCCCeEEEEeCCccc------hHHHHHHcCCCEEEcCCC--HH-HHHHh-----
Q 027664           43 GMHVGVVGLGGLGHVA--VKFA---KAMGVKVTVISTSPSK------KSEAVERLGADSFLVSRD--QD-EMQAA-----  103 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~--~~la---~~~g~~vi~~~~~~~~------~~~~~~~~g~~~~~~~~~--~~-~~~~~-----  103 (220)
                      +..+++.|..++|..+  +.+|   +..|.+|..+...-.|      +..+.+.+|.........  .. .+.+.     
T Consensus         6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~~   85 (207)
T d1okkd2           6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAMK   85 (207)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHHH
Confidence            4556677875555332  2333   3457777766655433      344556677765443332  21 22221     


Q ss_pred             cCCccEE-EEcCCCc
Q 027664          104 MGTMDGI-IDTVSAV  117 (220)
Q Consensus       104 ~~~~d~v-~d~~g~~  117 (220)
                      .+++|+| +|+.|..
T Consensus        86 ~~~~d~ilIDTaGr~  100 (207)
T d1okkd2          86 ARGYDLLFVDTAGRL  100 (207)
T ss_dssp             HHTCSEEEECCCCCC
T ss_pred             HCCCCEEEcCccccc
Confidence            2378887 5999975

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=82.83  E-value=1.1  Score=27.83  Aligned_cols=38  Identities=26%  Similarity=0.249  Sum_probs=29.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCCcc
Q 027664           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~~~   77 (220)
                      +-.|++|+|+|+|..+.-.+..+.....+|+.+.+.++
T Consensus        27 ~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          27 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             hcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            46789999999987777776666666669999987754

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=82.72  E-value=0.62  Score=33.88  Aligned_cols=31  Identities=32%  Similarity=0.408  Sum_probs=24.3

Q ss_pred             EEEEccchhHHHHHHHHHH--CCCeEEEEeCCc
Q 027664           46 VGVVGLGGLGHVAVKFAKA--MGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~--~g~~vi~~~~~~   76 (220)
                      |||+|+|.-|+.++.-|..  .|++|+++....
T Consensus         8 VlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           8 LAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             EEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             EEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            7999999999988765544  477999988654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.69  E-value=1.1  Score=28.81  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=18.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHC
Q 027664           44 MHVGVVGL-GGLGHVAVKFAKAM   65 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~la~~~   65 (220)
                      -+|.|+|| |.+|..++..+...
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~   27 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAG   27 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc
Confidence            47899997 99999998876653

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.54  E-value=3.2  Score=30.10  Aligned_cols=55  Identities=25%  Similarity=0.280  Sum_probs=36.2

Q ss_pred             cCCCCCCEEEEE-ccchhHHHHHHHHHHCCCeEEEEeC--CccchHHHHHHcCCCEEE
Q 027664           38 GLDKPGMHVGVV-GLGGLGHVAVKFAKAMGVKVTVIST--SPSKKSEAVERLGADSFL   92 (220)
Q Consensus        38 ~~~~~~~~vlI~-G~g~~G~~~~~la~~~g~~vi~~~~--~~~~~~~~~~~~g~~~~~   92 (220)
                      +.++++...+|. .+|..|.+++..++.+|.+++++..  .+..+....+.+|++.+.
T Consensus        59 g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~  116 (320)
T d1z7wa1          59 GLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVL  116 (320)
T ss_dssp             TSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceEE
Confidence            334555555555 4699999999999999996554443  333344445788887554

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=81.98  E-value=3.5  Score=29.63  Aligned_cols=55  Identities=22%  Similarity=0.236  Sum_probs=37.6

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHCCCeEEEEeCC--ccchHHHHHHcCCCEEE
Q 027664           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS--PSKKSEAVERLGADSFL   92 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~la~~~g~~vi~~~~~--~~~~~~~~~~~g~~~~~   92 (220)
                      +.+.+++.|+...+|.-|.+++..++..|.+.+++...  +..+....+.+|++.+.
T Consensus        56 g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~  112 (310)
T d1y7la1          56 GTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVL  112 (310)
T ss_dssp             TSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEe
Confidence            34567777666667999999999999999965544433  22233344778887664

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.69  E-value=1.2  Score=28.40  Aligned_cols=32  Identities=16%  Similarity=0.323  Sum_probs=26.8

Q ss_pred             EEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCc
Q 027664           45 HVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la~~~g~--~vi~~~~~~   76 (220)
                      +|.|+|+ |.+|..++.++...|.  ++..++..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            5889997 9999999998888885  788877765

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

Probab=81.60  E-value=5.2  Score=26.25  Aligned_cols=140  Identities=11%  Similarity=0.022  Sum_probs=73.1

Q ss_pred             CEEEEEccchhHHHHH--HHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCH-HHHHHhcCCccEEEEcCCCcccH
Q 027664           44 MHVGVVGLGGLGHVAV--KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ-DEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~--~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~d~v~d~~g~~~~~  120 (220)
                      ..-+|+|+|..|++-+  +-++..|.+++.+....-...+. ..-..+..+...+. +....+....|.++=.-|+-.++
T Consensus        33 g~~lv~GGG~~GlMga~a~ga~~~gg~v~gv~~~~l~~~~~-~~~~~~~~~~~~~~~~Rk~~m~~~sdafI~lPGG~GTL  111 (179)
T d1t35a_          33 GIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEV-VHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTY  111 (179)
T ss_dssp             TCEEEECCCCSHHHHHHHHHHHTTTCCEEEEEETTCCHHHH-TTCCCSEEEEESHHHHHHHHHHHHCSEEEECSCCHHHH
T ss_pred             CCeEEECCCchHHHHHHhcchhhcCCceeccccchhhcccc-ccccceeeeeeccHHHHHHHHHHhcCeEEEecCccchh
Confidence            3457888876676544  66777888888776654222221 12234554444332 22223334568888777776677


Q ss_pred             HHHHhccccCCEEEEeCCCCCCCCCCchhhhcCCeEEEEEecCCHHHHHHHH-HHHHcCCCccce-E-EeecccHHHHHH
Q 027664          121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGRKIVGGSLIGGLKETQEMI-DFAAKHNIRADI-E-VIPADYVNTAME  197 (220)
Q Consensus       121 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~g~i~~~~-~-~~~~~~~~~a~~  197 (220)
                      +++...+.-.    .++...            |-+-+... ...++.+.+.+ .++++|-+.+.. + ..-.++.+|+++
T Consensus       112 dEl~e~l~~~----ql~~~~------------kPiil~n~-~gfw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~~e~i~  174 (179)
T d1t35a_         112 EELFEVLCWA----QIGIHQ------------KPIGLYNV-NGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIE  174 (179)
T ss_dssp             HHHHHHHHTT----SCSSCC------------CCEEEECG-GGTTHHHHHHHHHHHHTTSSCTTHHHHEEEESSHHHHHH
T ss_pred             hHHHHHHHHH----HhhccC------------CCeEeecC-CccHHHHHHHHHHHHHcCCCChHHhCcEEEeCCHHHHHH
Confidence            7776655321    001101            11111110 11233443433 455677666654 3 444688999999


Q ss_pred             HHHc
Q 027664          198 RLAK  201 (220)
Q Consensus       198 ~~~~  201 (220)
                      .+++
T Consensus       175 ~L~~  178 (179)
T d1t35a_         175 QMQN  178 (179)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8864

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=81.58  E-value=0.88  Score=33.45  Aligned_cols=30  Identities=27%  Similarity=0.372  Sum_probs=25.0

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 027664           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~la~~~g~~vi~~~~~   75 (220)
                      |+|+|+|+-|..++.-+...|.+|+++..-
T Consensus         7 viIVGsG~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           7 VVIVGSGPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence            789999999988886666679999999853

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.11  E-value=2.7  Score=26.67  Aligned_cols=32  Identities=22%  Similarity=0.531  Sum_probs=22.7

Q ss_pred             EEEEEcc-chhHHHHHHHH-HHCC--CeEEEEeCCc
Q 027664           45 HVGVVGL-GGLGHVAVKFA-KAMG--VKVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~la-~~~g--~~vi~~~~~~   76 (220)
                      +|.|+|+ |.+|..++.++ ...+  .++...+..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            5789995 99998887654 3444  3777777654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=80.66  E-value=0.65  Score=32.10  Aligned_cols=31  Identities=29%  Similarity=0.271  Sum_probs=24.0

Q ss_pred             EEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 027664           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~la~~~g~-~vi~~~~~   75 (220)
                      -|+|+|+|+-|+.++..|...|. +|.++...
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~   36 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQ   36 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEe
Confidence            37888999999999887777776 57676644

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.31  E-value=3.1  Score=26.84  Aligned_cols=70  Identities=14%  Similarity=0.072  Sum_probs=38.9

Q ss_pred             EEEEEccchhHHHHH--HHHHHC----CCeEEEEeCCccchHHHHHH-----cCCCEEEcCCCHHHHHHhcCCccEEEEc
Q 027664           45 HVGVVGLGGLGHVAV--KFAKAM----GVKVTVISTSPSKKSEAVER-----LGADSFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~--~la~~~----g~~vi~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~d~v~d~  113 (220)
                      +|.|+|+|++|...+  .+++..    +.++...+.++++.......     .....+.-..+   ..+...+.|+|+-+
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~---~~~~l~~aDvVVit   78 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDT---FEGAVVDAKYVIFQ   78 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSS---HHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecC---cccccCCCCEEEEe
Confidence            578999987774433  333332    23788888887765433211     01112211222   22334588999999


Q ss_pred             CCCc
Q 027664          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      +|.+
T Consensus        79 a~~~   82 (162)
T d1up7a1          79 FRPG   82 (162)
T ss_dssp             CCTT
T ss_pred             cccC
Confidence            9865

>d2ayia1 e.60.1.1 (A:3-408) Aminopeptidase T {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Thermophilic metalloprotease-like
superfamily: Thermophilic metalloprotease-like
family: Thermophilic metalloprotease (M29)
domain: Aminopeptidase T
species: Thermus thermophilus [TaxId: 274]

Probab=80.19  E-value=3.4  Score=31.15  Aligned_cols=83  Identities=11%  Similarity=-0.045  Sum_probs=47.4

Q ss_pred             HHHhhcCCCCCCEEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCccchHHHHHHcCCCEEEcCCCHH---HHHHhcCC
Q 027664           33 PLRFYGLDKPGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGT  106 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~---g~~G~~~~~la~~~g~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~  106 (220)
                      .++....+++|+.|||...   -++..++...|...|++.+.+.-.++...+..-.++.+..+.....-   ...+..+.
T Consensus        13 lV~~~l~vqkGe~VlI~a~~~~~~Lvral~e~A~~~GA~pv~v~~~d~~i~r~~~~~a~~e~l~~~p~~~~~~~~~~~~~   92 (406)
T d2ayia1          13 AIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARKRLALAPEEGLDKAPAWLYEGMARAFRE   92 (406)
T ss_dssp             HHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEECCHHHHHHHHHHSCTTCTTCCCHHHHHHHHHHHHT
T ss_pred             HHHHcccCCCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeecChHHHHHHHhcCCHHHHhhcchhhHHHHHHHHHc
Confidence            3455566999999999853   47788888889999996554443333333332244444444333322   22233334


Q ss_pred             ccEEEEcCC
Q 027664          107 MDGIIDTVS  115 (220)
Q Consensus       107 ~d~v~d~~g  115 (220)
                      .|.++--.+
T Consensus        93 ~~a~i~I~~  101 (406)
T d2ayia1          93 GAARLAVSG  101 (406)
T ss_dssp             TCEEEEEEC
T ss_pred             CCcEEEeec
Confidence            555554333