Citrus Sinensis ID: 027690

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MSFQDLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK
Secondary Structure (PSIPRED)
cccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEcccc
Coil and Loop (DISEMBL)
msfqdlqngsrsspsssskspsQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKlksvsesdrdtdvnqnkkvedAKLARDFQTVLQEFQKIQQLASerestyspsvppssappsttdtsgsgdfmgsenqpflMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK
Flexible Loop (DISEMBL)
msfqdlqngsrsspssssksPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRilqlvkdtsaklksvsesdrdtdvnqnkkvedaKLARDFQTVLQEFQKIQQLAserestyspsvppssappsttdtsgSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGvvigkmtntk
Low Complexity Region (SEG)
MSFQDLQNGsrsspsssskspsQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASEREstyspsvppssappsttdtsgsGDFMGSENQPFLMEQKRQELFLLDneiafneaiieerehglreieeQIGQANEIFKDLAVLVHEQGVVIGKMTNTK
Disordered region (IsUnstruct)
************************VAAGIFQINTAVAAFRRLVDAIGTSKD***************************************************************************************************************ELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIG******
Disordered Region (DISOPRED)
MSFQD*******************VAAGIFQINTAVA*********************************************************************************************************************************************EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGK*****
Disordered Region (DISEMBL)
************************VAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSA****************NKKVEDAKLARDFQTVLQEFQKIQQ***************************SGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK
Disordered Region (DISPRO)
*******************SPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSV*****************************QKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFQDLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
P93654	268	Syntaxin-22 OS=Arabidopsi	yes	no	0.954	0.783	0.606	3e-64
Q39233	279	Syntaxin-21 OS=Arabidopsi	no	no	0.954	0.752	0.537	8e-56
O04378	255	Syntaxin-23 OS=Arabidopsi	no	no	0.959	0.827	0.589	4e-55
Q9C615	416	Putative syntaxin-24 OS=A	no	no	0.722	0.382	0.482	8e-35
Q54JY7	356	Syntaxin-7A OS=Dictyostel	yes	no	0.890	0.550	0.310	1e-20
Q5R602	261	Syntaxin-7 OS=Pongo abeli	yes	no	0.845	0.712	0.307	5e-14
O70257	261	Syntaxin-7 OS=Rattus norv	yes	no	0.845	0.712	0.317	6e-14
O15400	261	Syntaxin-7 OS=Homo sapien	yes	no	0.845	0.712	0.302	2e-13
Q3ZBT5	261	Syntaxin-7 OS=Bos taurus	yes	no	0.845	0.712	0.307	5e-13
O70439	261	Syntaxin-7 OS=Mus musculu	yes	no	0.845	0.712	0.297	2e-11

>sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1

 Score =  244 bits (623), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 131/216 (60%), Positives = 163/216 (75%), Gaps = 6/216 (2%)

Query: 1   MSFQDLQNGSRSSP---SSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQ 57
           MSFQDL++G   S    +   +  +QAVA+GIFQINT V+ F+RLV+ +GT KDT + R+
Sbjct: 1   MSFQDLESGRGRSTRKFNGGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPELRE 60

Query: 58  KLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQL 117
           KLH TR  I QLVKDTSAKLK  SE+D  + VN +KK+ DAKLARDFQ VL+EFQK QQ 
Sbjct: 61  KLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQQT 120

Query: 118 ASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAI 177
           A+ERE+TY+P VP S+ P S   T+G  D +  E +  L E KRQEL LLDNEIAFNEA+
Sbjct: 121 AAERETTYTPFVPQSALPSSY--TAGEVDKV-PEQRAQLQESKRQELVLLDNEIAFNEAV 177

Query: 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           IEERE G++EI +QIG+ NEIFKDLAVLV++QGV+I
Sbjct: 178 IEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMI 213

May provide the t-SNARE function in the vacuolar assembly.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39233|SYP21_ARATH Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1

 Score =  216 bits (551), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 122/227 (53%), Positives = 158/227 (69%), Gaps = 17/227 (7%)

Query: 1   MSFQDLQNGSRS-SPS----------SSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTS 49
           MSFQDL+ G+RS +P+          SS   PSQ VAAGIF+I+TAV +F RLV++IGT 
Sbjct: 1   MSFQDLEAGTRSPAPNRFTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNSIGTP 60

Query: 50  KDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQ 109
           KDTL+ R KL  TR +I +LVK+TSAKLK  SE+D     +Q KK+ DAKLA+DFQ+VL+
Sbjct: 61  KDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLK 120

Query: 110 EFQKIQQLASERESTYSPSVP---PSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFL 166
           EFQK Q+LA+ERE TY+P V    P+S      DT        S+ Q  L++ +RQE+  
Sbjct: 121 EFQKAQRLAAEREITYTPVVTKEIPTSYNAPELDTES---LRISQQQALLLQSRRQEVVF 177

Query: 167 LDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           LDNEI FNEAIIEERE G+REIE+QI   N +FKDLA++V+ QG ++
Sbjct: 178 LDNEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIV 224

May function in the docking or fusion of transport vesicles with the prevacuolar membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|O04378|SYP23_ARATH Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=1 SV=1

 Score =  214 bits (545), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 132/224 (58%), Positives = 161/224 (71%), Gaps = 13/224 (5%)

Query: 1   MSFQDLQNG-SRSSPSS-------SSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDT 52
           MSFQDL+ G  RS  SS       S +  +Q VA+GIFQINT+V+ F RLV+ +GT KDT
Sbjct: 1   MSFQDLEAGRGRSLASSRNINGGGSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPKDT 60

Query: 53  LDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQ 112
            + R+KLH TR  I QLVKDTSAKLK  SE+D    VNQ KK+ DAKLA+DFQ VL+EFQ
Sbjct: 61  PELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKEFQ 120

Query: 113 KIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGS---ENQPFLMEQKRQELFLLDN 169
           K Q+LA+ERE+ Y+P V   S P S   TS   D  G    E +  L+E KRQEL LLDN
Sbjct: 121 KAQRLAAERETVYAPLVHKPSLPSSY--TSSEIDVNGDKHPEQRALLVESKRQELVLLDN 178

Query: 170 EIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           EIAFNEA+IEERE G++EI++QIG+ +EIFKDLAVLVH+QG +I
Sbjct: 179 EIAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMI 222

May function in the docking or fusion of transport vesicles with the prevacuolar membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1

 Score =  147 bits (370), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 9/168 (5%)

Query: 45  AIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDF 104
           A+G+S  T  H++ L      I QLVKDTSA L+  SE+D   DV Q+KK+ DAKLA+DF
Sbjct: 144 ALGSSNSTGGHKKML-----LIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDF 198

Query: 105 QTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQEL 164
           +  L+EFQK Q +  ERE++Y P  P  S   S  D      +  S+ Q  LME +RQE+
Sbjct: 199 EAALKEFQKAQHITVERETSYIPFDPKGSFSSSEVDIG----YDRSQEQRVLMESRRQEI 254

Query: 165 FLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVV 212
            LLDNEI+ NEA IE RE G++E++ QI +  E+FKDLAV+V  QG +
Sbjct: 255 VLLDNEISLNEARIEAREQGIQEVKHQISEVMEMFKDLAVMVDHQGTI 302

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54JY7|STX7A_DICDI Syntaxin-7A OS=Dictyostelium discoideum GN=syn7A PE=1 SV=1

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 110/222 (49%), Gaps = 26/222 (11%)

Query: 17  SSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAK 76
           ++ S  Q+    I QI  AV    +LV  +GT KD++D R+K+ N       L+   S K
Sbjct: 83  TNNSDYQSTTRNIQQIQNAVQILTKLVQLLGTPKDSMDTREKIRNCVDSTTHLISSESGK 142

Query: 77  LK---SVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSS 133
           +K   S++   RD+      K+   KL ++F   LQ+F+ I Q+A+++E T    V P  
Sbjct: 143 VKNLTSLASRSRDS----KNKLLYQKLVKEFNNCLQQFKDIAQVATKKEKTTPLPVAPDH 198

Query: 134 APPST-------------------TDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFN 174
             P+T                          D    E+Q  +   +RQ+L  ++ E  + 
Sbjct: 199 QQPTTFGRNNNSNNNNQNNHFLNNQQPYYDDDNREDEHQSLMESSRRQQLAQIEAEREYQ 258

Query: 175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKM 216
            +II+ER+ G+R+IE+ I + NEIF DL+ LV EQGV+I  +
Sbjct: 259 NSIIQERDEGIRKIEQSIVEINEIFVDLSGLVAEQGVMINTI 300

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for fusion of late endosomes with lysosomes and homotypic lysosomal fusion. May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5R602|STX7_PONAB Syntaxin-7 OS=Pongo abelii GN=STX7 PE=2 SV=3

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 104/195 (53%), Gaps = 9/195 (4%)

Query: 22  SQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVS 81
           +Q +++ I +I    A  +R ++ +GT +D+ + RQ+L   +Q   QL K+T   +K   
Sbjct: 15  AQRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLTKETDKYIKEFG 74

Query: 82  ESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPST--T 139
                    + +K++  +L  +F T L  FQK+Q+ A+ERE  +   V  SS    +   
Sbjct: 75  SLPTTPSEQRQRKIQKDRLVGEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSGSFPE 134

Query: 140 DTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEA-IIEEREHGLREIEEQIGQANEI 198
           D+S   + +  E+      Q + ++ + D EI  ++  +I ERE  +R++E  I   NEI
Sbjct: 135 DSSKERNLVSWES------QTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEI 188

Query: 199 FKDLAVLVHEQGVVI 213
           FKDL +++HEQG VI
Sbjct: 189 FKDLGMMIHEQGDVI 203

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Pongo abelii (taxid: 9601)

>sp|O70257|STX7_RAT Syntaxin-7 OS=Rattus norvegicus GN=Stx7 PE=1 SV=4

 Score = 77.8 bits (190), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 104/195 (53%), Gaps = 9/195 (4%)

Query: 22  SQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVS 81
           +Q +++ I +I    A  +R ++ +GT +DT + RQ+L   +Q   QL K+T   +K   
Sbjct: 15  AQRISSNIQKITQCSAEIQRTLNQLGTPQDTPELRQQLQQEQQYTNQLAKETDKYIKEFG 74

Query: 82  ESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPS--TT 139
                    + +K++  +L  +F T L  FQK+Q+ A+ERE  +   V  SS        
Sbjct: 75  FLPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAEREKEFVARVRASSRVSGGFPE 134

Query: 140 DTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEA-IIEEREHGLREIEEQIGQANEI 198
           D+S   +F+  E+      Q + ++ + D EI  ++  +I ERE  +R++E  I   NEI
Sbjct: 135 DSSKEKNFVSWES------QTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEI 188

Query: 199 FKDLAVLVHEQGVVI 213
           FKDL +++HEQG VI
Sbjct: 189 FKDLGMMIHEQGDVI 203

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Rattus norvegicus (taxid: 10116)

>sp|O15400|STX7_HUMAN Syntaxin-7 OS=Homo sapiens GN=STX7 PE=1 SV=4

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 103/195 (52%), Gaps = 9/195 (4%)

Query: 22  SQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVS 81
           +Q +++ I +I       +R ++ +GT +D+ + RQ+L   +Q   QL K+T   +K   
Sbjct: 15  AQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFG 74

Query: 82  ESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPST--T 139
                    + +K++  +L  +F T L  FQK+Q+ A+ERE  +   V  SS    +   
Sbjct: 75  SLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSGSFPE 134

Query: 140 DTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEA-IIEEREHGLREIEEQIGQANEI 198
           D+S   + +  E+      Q + ++ + D EI  ++  +I ERE  +R++E  I   NEI
Sbjct: 135 DSSKERNLVSWES------QTQPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEI 188

Query: 199 FKDLAVLVHEQGVVI 213
           FKDL +++HEQG VI
Sbjct: 189 FKDLGMMIHEQGDVI 203

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Homo sapiens (taxid: 9606)

>sp|Q3ZBT5|STX7_BOVIN Syntaxin-7 OS=Bos taurus GN=STX7 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/195 (30%), Positives = 101/195 (51%), Gaps = 9/195 (4%)

Query: 22  SQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVS 81
           +Q +++ I +I    A  +R ++ +GT +D+ + RQ+L   +Q   QL K+T   +K   
Sbjct: 15  AQRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFG 74

Query: 82  ESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPS--TT 139
                    + +K++  +L  +F   L  FQK+Q+ A+ERE  +   V  SS        
Sbjct: 75  SLPTTPSDQRQRKIQKDRLVAEFTASLTNFQKVQRQAAEREKEFVARVRASSRVSGGFPE 134

Query: 140 DTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEA-IIEEREHGLREIEEQIGQANEI 198
           ++S   + +  E+Q     Q      L D EI  ++  +I+ERE  +R++E  I   NEI
Sbjct: 135 ESSKERNLVSWESQTQPQAQ------LQDEEITEDDLRLIQERESSIRQLEADIMDINEI 188

Query: 199 FKDLAVLVHEQGVVI 213
           FKDL +++HEQG VI
Sbjct: 189 FKDLGMMIHEQGDVI 203

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Bos taurus (taxid: 9913)

>sp|O70439|STX7_MOUSE Syntaxin-7 OS=Mus musculus GN=Stx7 PE=1 SV=3

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 9/195 (4%)

Query: 22  SQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVS 81
           +Q +++ I +I       +R ++ +GT +D+ + RQ L   +Q   QL K+T   +K   
Sbjct: 15  AQRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQLLQQKQQYTNQLAKETDKYIKEFG 74

Query: 82  ESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPS--TT 139
                    + +K++  +L  +F T L  FQK Q+ A+ERE  +   V  SS        
Sbjct: 75  SLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKAQRQAAEREKEFVARVRASSRVSGGFPE 134

Query: 140 DTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEA-IIEEREHGLREIEEQIGQANEI 198
           D+S   + +  E+Q       + ++ + D EI  ++  +I ERE  +R++E  I   NEI
Sbjct: 135 DSSKEKNLVSWESQT------QPQVQVQDEEITEDDLRLIHERESSIRQLEADIMDINEI 188

Query: 199 FKDLAVLVHEQGVVI 213
           FKDL +++HEQG +I
Sbjct: 189 FKDLGMMIHEQGDMI 203

May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Mediates the endocytic trafficking from early endosomes to late endosomes and lysosomes.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
357508487	266	Syntaxin-22 [Medicago truncatula] gi|872	0.945	0.781	0.726	5e-82
356561098	265	PREDICTED: syntaxin-22-like [Glycine max	0.940	0.781	0.726	6e-82
388506962	266	unknown [Medicago truncatula]	0.945	0.781	0.722	4e-81
388495804	266	unknown [Lotus japonicus]	0.945	0.781	0.694	1e-78
225451663	268	PREDICTED: syntaxin-22 [Vitis vinifera]	0.963	0.791	0.766	1e-76
224131428	270	predicted protein [Populus trichocarpa]	0.954	0.777	0.743	5e-74
118488433	270	unknown [Populus trichocarpa]	0.968	0.788	0.748	6e-74
255543479	264	syntaxin, plant, putative [Ricinus commu	0.959	0.799	0.705	4e-73
449462039	274	PREDICTED: syntaxin-22-like [Cucumis sat	0.954	0.766	0.594	7e-65
449517098	253	PREDICTED: LOW QUALITY PROTEIN: syntaxin	0.954	0.830	0.594	9e-65

>gi|357508487|ref|XP_003624532.1| Syntaxin-22 [Medicago truncatula] gi|87241300|gb|ABD33158.1| Syntaxin, N-terminal [Medicago truncatula] gi|355499547|gb|AES80750.1| Syntaxin-22 [Medicago truncatula]

 Score =  309 bits (792), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 157/216 (72%), Positives = 183/216 (84%), Gaps = 8/216 (3%)

Query: 1   MSFQDLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLH 60
           MSFQD+Q+GS + PS  ++SPSQAVAAGIFQINTAVA FRRLVD++GT KDT +HRQKLH
Sbjct: 1   MSFQDIQHGS-NPPSRRTQSPSQAVAAGIFQINTAVATFRRLVDSVGTVKDTPEHRQKLH 59

Query: 61  NTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASE 120
           NTRQRI QLVKDTSAKLKS+SES+RD++ N NKK+EDAKLARDFQT LQEFQK+QQLASE
Sbjct: 60  NTRQRISQLVKDTSAKLKSLSESNRDSNANANKKIEDAKLARDFQTTLQEFQKVQQLASE 119

Query: 121 RESTYSPSVPPSSAPPSTTDTSGSGD---FMGSENQPFLMEQKRQELFLLDNEIAFNEAI 177
           RES Y+P+ P SS P S    SG G+    +  E+QP +  Q RQEL LLDNEI+FNEA+
Sbjct: 120 RESAYTPAAPASSLPTS----SGPGEQSIEIDPESQPLVRGQMRQELHLLDNEISFNEAM 175

Query: 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           IEER+ GLREIEEQIG+ANEIFKDLAVLVH+QG+VI
Sbjct: 176 IEERDQGLREIEEQIGEANEIFKDLAVLVHDQGIVI 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561098|ref|XP_003548822.1| PREDICTED: syntaxin-22-like [Glycine max]

 Score =  309 bits (791), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 157/216 (72%), Positives = 182/216 (84%), Gaps = 9/216 (4%)

Query: 1   MSFQDLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLH 60
           MSFQD+Q G  + PS  ++SPSQAVAAGIFQINTAVA FRRLVD +GT KDT +HRQKLH
Sbjct: 1   MSFQDIQGGP-NPPSRRNQSPSQAVAAGIFQINTAVATFRRLVDGVGTVKDTPEHRQKLH 59

Query: 61  NTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASE 120
           NTRQRIL LVKD+SAKLKS++ESDRD + N +KK+EDAKLARDFQT LQEFQK+QQLASE
Sbjct: 60  NTRQRILLLVKDSSAKLKSLTESDRDANANASKKIEDAKLARDFQTTLQEFQKVQQLASE 119

Query: 121 RESTYSPSVPPSSAPPSTTDTSGSGD---FMGSENQPFLMEQKRQELFLLDNEIAFNEAI 177
           RES Y+P+  PSS P S    SGSG+    +  E+QPF+ E KRQE+ LLDNEI+FNEA+
Sbjct: 120 RESAYTPAA-PSSLPTS----SGSGEESVGIDVESQPFIREHKRQEILLLDNEISFNEAM 174

Query: 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           IEERE G+RE+EEQIGQANEIFKDLAVLVH+QGVVI
Sbjct: 175 IEEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVI 210

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506962|gb|AFK41547.1| unknown [Medicago truncatula]

 Score =  306 bits (784), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 156/216 (72%), Positives = 182/216 (84%), Gaps = 8/216 (3%)

Query: 1   MSFQDLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLH 60
           MSFQD+Q+GS + PS  ++SPSQAVAAGIFQINTAVA FRRLVD++GT KDT +HRQKLH
Sbjct: 1   MSFQDIQHGS-NPPSRRTQSPSQAVAAGIFQINTAVATFRRLVDSVGTVKDTPEHRQKLH 59

Query: 61  NTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASE 120
           NTRQRI QLVKDTSAKLKS+SES+RD++ N NKK+EDAKLARDFQT LQEFQK+QQLASE
Sbjct: 60  NTRQRISQLVKDTSAKLKSLSESNRDSNANANKKIEDAKLARDFQTTLQEFQKVQQLASE 119

Query: 121 RESTYSPSVPPSSAPPSTTDTSGSGD---FMGSENQPFLMEQKRQELFLLDNEIAFNEAI 177
           RES Y+P+ P SS P S    SG G+    +  E+QP +  Q RQEL LLDN I+FNEA+
Sbjct: 120 RESAYTPAAPASSLPTS----SGPGEQSIEIDPESQPLVRGQMRQELHLLDNGISFNEAM 175

Query: 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           IEER+ GLREIEEQIG+ANEIFKDLAVLVH+QG+VI
Sbjct: 176 IEERDQGLREIEEQIGEANEIFKDLAVLVHDQGIVI 211

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495804|gb|AFK35968.1| unknown [Lotus japonicus]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/216 (69%), Positives = 181/216 (83%), Gaps = 8/216 (3%)

Query: 1   MSFQDLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLH 60
           MSFQD+Q G+ + P+  ++SPSQAVAAGIFQINTAVA FRRLVDA+GT KDT  HRQKLH
Sbjct: 1   MSFQDIQGGA-NPPTRRTQSPSQAVAAGIFQINTAVATFRRLVDAVGTVKDTPQHRQKLH 59

Query: 61  NTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASE 120
           NTRQRILQLVKDTSAKLK +++SDRD + N NKK+EDAKLARDFQT LQEFQK+QQLASE
Sbjct: 60  NTRQRILQLVKDTSAKLKILTDSDRDANANANKKIEDAKLARDFQTTLQEFQKVQQLASE 119

Query: 121 RESTYSPSVPPSSAPPSTTDTSGSGD---FMGSENQPFLMEQKRQELFLLDNEIAFNEAI 177
           RESTY+    P+S       +SG+G+    +  E++PF+ EQKRQE+ LLDNE++FNEA+
Sbjct: 120 RESTYT----PASTSSPLPTSSGAGEESVEVDLESRPFIGEQKRQEILLLDNELSFNEAM 175

Query: 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           I+ER+ G+RE+EEQIGQANEIFKDLAVLVH+QG VI
Sbjct: 176 IDERDQGIREVEEQIGQANEIFKDLAVLVHDQGTVI 211

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451663|ref|XP_002277874.1| PREDICTED: syntaxin-22 [Vitis vinifera] gi|296082242|emb|CBI21247.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 164/214 (76%), Positives = 185/214 (86%), Gaps = 2/214 (0%)

Query: 1   MSFQDLQNGSR-SSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKL 59
           MSFQDLQNG++ SS S S  SPSQAVAAGIFQINTAVA FRRLVDAIGTSKDT DHRQKL
Sbjct: 1   MSFQDLQNGAKPSSSSLSRTSPSQAVAAGIFQINTAVAGFRRLVDAIGTSKDTPDHRQKL 60

Query: 60  HNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLAS 119
           H++RQRILQLVK+TSAKLKS+SESD   +VN +KKVEDAKLARDFQT LQEFQK+QQLA+
Sbjct: 61  HSSRQRILQLVKETSAKLKSLSESDHAANVNPSKKVEDAKLARDFQTTLQEFQKVQQLAA 120

Query: 120 ERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIE 179
           ERESTYSPS P S  P S++D   + + M  ENQPFL+ QKRQE+  L NEIAFNEAIIE
Sbjct: 121 ERESTYSPSAPSSIPPASSSDEYLALN-MDQENQPFLVGQKRQEVLFLGNEIAFNEAIIE 179

Query: 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           ERE G++EI++QIGQANEIF+DLAVLVHEQGVVI
Sbjct: 180 EREQGIKEIQDQIGQANEIFRDLAVLVHEQGVVI 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131428|ref|XP_002321082.1| predicted protein [Populus trichocarpa] gi|222861855|gb|EEE99397.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 162/218 (74%), Positives = 184/218 (84%), Gaps = 8/218 (3%)

Query: 1   MSFQDLQNG-SRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKL 59
           MSFQD QNG   SS SS+S+SPSQAVAAGIFQINTAVA+FRRLVDAIGT KDT +HR KL
Sbjct: 1   MSFQDFQNGKRPSSSSSTSRSPSQAVAAGIFQINTAVASFRRLVDAIGTDKDTPEHRHKL 60

Query: 60  HNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLAS 119
           HN+RQRILQLVK+TSAKLKS+SE D D D+N +KK+EDAKLARDFQ  LQEFQK+QQLAS
Sbjct: 61  HNSRQRILQLVKETSAKLKSLSELDHDPDINPSKKIEDAKLARDFQITLQEFQKVQQLAS 120

Query: 120 ERESTYSPSVPPSSAPPSTTDTSGSGDF----MGSENQPFLMEQKRQELFLLDNEIAFNE 175
           ERESTYSPS        S   +SGSG++    M  +NQPFL EQ+RQE+ LLDNE+AFNE
Sbjct: 121 ERESTYSPS---LPPQSSLPPSSGSGEYLIASMDQDNQPFLREQRRQEVILLDNEVAFNE 177

Query: 176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           AIIEERE G+R+IEEQIG+ANEIFKDLAVLVH+QGVVI
Sbjct: 178 AIIEEREQGIRDIEEQIGEANEIFKDLAVLVHDQGVVI 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488433|gb|ABK96031.1| unknown [Populus trichocarpa]

 Score =  282 bits (722), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 161/215 (74%), Positives = 184/215 (85%), Gaps = 2/215 (0%)

Query: 1   MSFQDLQNG-SRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKL 59
           MSFQD QNG   SS SS+S+SPSQAVAAGIFQINTAVA FRRLVDAIGT KDT +HR KL
Sbjct: 1   MSFQDFQNGKRPSSSSSTSRSPSQAVAAGIFQINTAVAGFRRLVDAIGTDKDTPEHRHKL 60

Query: 60  HNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLAS 119
           HN+RQRILQLVK+TSAKLKS+SE D D D+N +KK+EDAKLARDFQ  LQEFQK+QQLAS
Sbjct: 61  HNSRQRILQLVKETSAKLKSLSELDHDPDINPSKKIEDAKLARDFQITLQEFQKVQQLAS 120

Query: 120 ERESTYSPSVPPSSAPPSTTDTSGSG-DFMGSENQPFLMEQKRQELFLLDNEIAFNEAII 178
           ERESTYSPS+PP S+ P ++ +       M  +NQPFL EQ+RQE+ LLDNE+AFNEAII
Sbjct: 121 ERESTYSPSLPPQSSLPPSSGSGEYVIASMDQDNQPFLREQRRQEVILLDNEVAFNEAII 180

Query: 179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           EERE G+R+IEEQIG+ANEIFKDLAVLVH+QGVVI
Sbjct: 181 EEREQGIRDIEEQIGEANEIFKDLAVLVHDQGVVI 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543479|ref|XP_002512802.1| syntaxin, plant, putative [Ricinus communis] gi|223547813|gb|EEF49305.1| syntaxin, plant, putative [Ricinus communis]

 Score =  280 bits (715), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/217 (70%), Positives = 175/217 (80%), Gaps = 6/217 (2%)

Query: 1   MSFQDLQNGSR----SSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHR 56
           MSFQDLQ+G R    SS S+ S+SPSQAVAAGIFQINTAVA FRRLVD+IGT+KDT +HR
Sbjct: 1   MSFQDLQSGKRPSSSSSASAMSRSPSQAVAAGIFQINTAVAGFRRLVDSIGTAKDTPEHR 60

Query: 57  QKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQ 116
           QKLHNTRQRILQLVKDTSAKLK+VSESD   +VN +KK+EDAKLARDFQT LQEFQK+QQ
Sbjct: 61  QKLHNTRQRILQLVKDTSAKLKAVSESDHQANVNASKKIEDAKLARDFQTTLQEFQKVQQ 120

Query: 117 LASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEA 176
           LASERESTYSPS+P  S PP+         ++             QE+ LLDNEIAFNEA
Sbjct: 121 LASERESTYSPSLP--SLPPAAAYFPDLRFYLYILFFSLKHLAVLQEVLLLDNEIAFNEA 178

Query: 177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           +I+ER+ G+REI+EQIGQ N+IFKDLAVLVHEQGVVI
Sbjct: 179 VIDERDQGIREIQEQIGQVNDIFKDLAVLVHEQGVVI 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462039|ref|XP_004148749.1| PREDICTED: syntaxin-22-like [Cucumis sativus]

 Score =  252 bits (644), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 132/222 (59%), Positives = 163/222 (73%), Gaps = 12/222 (5%)

Query: 1   MSFQDLQNG-----SRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDH 55
           MSFQD++ G     SR    +  + P+QAVA+GIFQINTAVA F+RLV+ +GT KDT + 
Sbjct: 1   MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPEL 60

Query: 56  RQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQ 115
           R+KLH TR  I QLVKDTSAKLK  S+ D   +VN +KK+ DAKLA+DFQ VL+EFQK Q
Sbjct: 61  REKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQ 120

Query: 116 QLASERESTYSPSVPPSSAPPSTT----DTSGSGDFMGSENQPFLMEQKRQELFLLDNEI 171
           +LA+ERE+ YSP VPP+  P S T    D S   +    E +  L+E +RQE+ LLDNEI
Sbjct: 121 RLAAERETAYSPFVPPTVLPSSYTAWEADASSEKNL---EQRALLVESRRQEVLLLDNEI 177

Query: 172 AFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           AFNEAIIEERE G+ EI++QIG+ NEIFKDLAVLVHEQG +I
Sbjct: 178 AFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMI 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517098|ref|XP_004165583.1| PREDICTED: LOW QUALITY PROTEIN: syntaxin-22-like [Cucumis sativus]

 Score =  252 bits (643), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 132/222 (59%), Positives = 163/222 (73%), Gaps = 12/222 (5%)

Query: 1   MSFQDLQNG-----SRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDH 55
           MSFQD++ G     SR    +  + P+QAVA+GIFQINTAVA F+RLV+ +GT KDT + 
Sbjct: 1   MSFQDIEAGRPFASSRRDLINGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPEL 60

Query: 56  RQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQ 115
           R+KLH TR  I QLVKDTSAKLK  S+ D   +VN +KK+ DAKLA+DFQ VL+EFQK Q
Sbjct: 61  REKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQ 120

Query: 116 QLASERESTYSPSVPPSSAPPSTT----DTSGSGDFMGSENQPFLMEQKRQELFLLDNEI 171
           +LA+ERE+ YSP VPP+  P S T    D S   +    E +  L+E +RQE+ LLDNEI
Sbjct: 121 RLAAERETAYSPFVPPTVLPSSYTAWEADASSEKNL---EQRALLVESRRQEVLLLDNEI 177

Query: 172 AFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           AFNEAIIEERE G+ EI++QIG+ NEIFKDLAVLVHEQG +I
Sbjct: 178 AFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMI 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:3356150	268	VAM3 "VACUOLAR MORPHOLOGY 3" [	0.954	0.783	0.481	9.6e-41
TAIR|locus:2129406	262	SYP23 "syntaxin of plants 23"	0.963	0.809	0.461	4.8e-39
TAIR|locus:2148960	279	SYP21 "syntaxin of plants 21"	0.890	0.702	0.418	1.1e-32
TAIR|locus:2028336	416	ATSYP24 [Arabidopsis thaliana	0.722	0.382	0.375	3.4e-20
RGD|619747	261	Stx7 "syntaxin 7" [Rattus norv	0.454	0.383	0.31	2.8e-15
UNIPROTKB|Q5ZMP2	258	STX7 "Uncharacterized protein"	0.45	0.383	0.31	3.4e-15
DICTYBASE|DDB_G0287733	356	syn7A "t-SNARE family protein"	0.513	0.317	0.310	5.2e-15
UNIPROTKB|F1S3P8	261	STX7 "Uncharacterized protein"	0.454	0.383	0.29	1.1e-14
UNIPROTKB|O15400	261	STX7 "Syntaxin-7" [Homo sapien	0.454	0.383	0.29	1.9e-14
UNIPROTKB|Q3ZBT5	261	STX7 "Syntaxin-7" [Bos taurus	0.454	0.383	0.29	3.3e-14

TAIR|locus:3356150 VAM3 "VACUOLAR MORPHOLOGY 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 104/216 (48%), Positives = 125/216 (57%)

Query:     1 MSFQDLQNGXXXXXXXXXXX---XXQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQ 57
             MSFQDL++G                QAVA+GIFQINT V+ F+RLV+ +GT KDT + R+
Sbjct:     1 MSFQDLESGRGRSTRKFNGGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPELRE 60

Query:    58 KLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQL 117
             KLH TR  I QLVKDTSAKLK  SE+D  + VN +KK+ DAKLARDFQ VL+EFQK QQ 
Sbjct:    61 KLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQQT 120

Query:   118 ASEREXXXXXXXXXXXXXXXXXXXXXXGDFMGSENQPFLMEQKRQELFLLDXXXXXXXXX 177
             A+ERE                       D +  E +  L E KRQEL LLD         
Sbjct:   121 AAERETTYTPFVPQSALPSSYTAGEV--DKV-PEQRAQLQESKRQELVLLDNEIAFNEAV 177

Query:   178 XXXXXXXXXXXXXQIGQANEIFKDLAVLVHEQGVVI 213
                          QIG+ NEIFKDLAVLV++QGV+I
Sbjct:   178 IEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMI 213

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005770 "late endosome" evidence=TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009660 "amyloplast organization" evidence=IMP

GO:0005773 "vacuole" evidence=IDA

GO:0010118 "stomatal movement" evidence=IMP

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=IGI;RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

GO:0009959 "negative gravitropism" evidence=IMP

TAIR|locus:2129406 SYP23 "syntaxin of plants 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 103/223 (46%), Positives = 123/223 (55%)

Query:     1 MSFQDLQNGXXXXXXXXXXX--------XXQAVAAGIFQINTAVAAFRRLVDAIGTSKDT 52
             MSFQDL+ G                     Q VA+GIFQINT+V+ F RLV+ +GT KDT
Sbjct:     1 MSFQDLEAGRGRSLASSRNINGGGSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPKDT 60

Query:    53 LDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQ 112
              + R+KLH TR  I QLVKDTSAKLK  SE+D    VNQ KK+ DAKLA+DFQ VL+EFQ
Sbjct:    61 PELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKEFQ 120

Query:   113 KIQQLASEREXXXXXXXXXXX--XXXXXXXXXXXGDFMGSENQPFLMEQKRQELFLLDXX 170
             K Q+LA+ERE                        GD    E +  L+E KRQEL LLD  
Sbjct:   121 KAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNGD-KHPEQRALLVESKRQELVLLDNE 179

Query:   171 XXXXXXXXXXXXXXXXXXXXQIGQANEIFKDLAVLVHEQGVVI 213
                                 QIG+ +EIFKDLAVLVH+QG +I
Sbjct:   180 IAFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMI 222

GO:0005484 "SNAP receptor activity" evidence=IEA;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2148960 SYP21 "syntaxin of plants 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 82/196 (41%), Positives = 113/196 (57%)

Query:    23 QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82
             Q VAAGIF+I+TAV +F RLV++IGT KDTL+ R KL  TR +I +LVK+TSAKLK  SE
Sbjct:    34 QEVAAGIFRISTAVNSFFRLVNSIGTPKDTLELRDKLQKTRLQISELVKNTSAKLKEASE 93

Query:    83 SDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASEREXXXXXXXXXXXXXXXXXXXX 142
             +D     +Q KK+ DAKLA+DFQ+VL+EFQK Q+LA+ERE                    
Sbjct:    94 ADLHGSASQIKKIADAKLAKDFQSVLKEFQKAQRLAAEREITYTPVVTKEIPTSYNAPEL 153

Query:   143 XXGDFMGSENQPFLMEQKRQELFLLDXXXXXXXXXXXXXXXXXXXXXXQIGQANEIFKDL 202
                    S+ Q  L++ +RQE+  LD                      QI   N +FKDL
Sbjct:   154 DTESLRISQQQALLLQSRRQEVVFLDNEITFNEAIIEEREQGIREIEDQIRDVNGMFKDL 213

Query:   203 AVLVHEQGVVIGKMTN 218
             A++V+ QG ++  +++
Sbjct:   214 ALMVNHQGNIVDDISS 229

GO:0005484 "SNAP receptor activity" evidence=IEA;IMP;IDA;TAS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA;TAS

GO:0016192 "vesicle-mediated transport" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0006896 "Golgi to vacuole transport" evidence=TAS

GO:0005770 "late endosome" evidence=IDA;TAS

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA;TAS

GO:0016020 "membrane" evidence=IDA

GO:0045324 "late endosome to vacuole transport" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=RCA;IDA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2028336 ATSYP24 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 3.4e-20, P = 3.4e-20
 Identities = 63/168 (37%), Positives = 83/168 (49%)

Query:    45 AIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDF 104
             A+G+S  T  H++ L      I QLVKDTSA L+  SE+D   DV Q+KK+ DAKLA+DF
Sbjct:   144 ALGSSNSTGGHKKML-----LIGQLVKDTSANLREASETDHRRDVAQSKKIADAKLAKDF 198

Query:   105 QTVLQEFQKIQQLASEREXXXXXXXXXXXXXXXXXXXXXXGDFMGSENQPFLMEQKRQEL 164
             +  L+EFQK Q +  ERE                        +  S+ Q  LME +RQE+
Sbjct:   199 EAALKEFQKAQHITVERETSYIPFDPKGSFSSSEVDIG----YDRSQEQRVLMESRRQEI 254

Query:   165 FLLDXXXXXXXXXXXXXXXXXXXXXXQIGQANEIFKDLAVLVHEQGVV 212
              LLD                      QI +  E+FKDLAV+V  QG +
Sbjct:   255 VLLDNEISLNEARIEAREQGIQEVKHQISEVMEMFKDLAVMVDHQGTI 302

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=ISS;RCA

GO:0016021 "integral to membrane" evidence=TAS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

RGD|619747 Stx7 "syntaxin 7" [Rattus norvegicus (taxid:10116)]

 Score = 141 (54.7 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
 Identities = 31/100 (31%), Positives = 54/100 (54%)

Query:    23 QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82
             Q +++ I +I    A  +R ++ +GT +DT + RQ+L   +Q   QL K+T   +K    
Sbjct:    16 QRISSNIQKITQCSAEIQRTLNQLGTPQDTPELRQQLQQEQQYTNQLAKETDKYIKEFGF 75

Query:    83 SDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERE 122
                     + +K++  +L  +F T L  FQK+Q+ A+ERE
Sbjct:    76 LPTTPSEQRQRKIQKDRLVAEFTTALTNFQKVQRQAAERE 115

GO:0000149 "SNARE binding" evidence=IPI

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005765 "lysosomal membrane" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0006906 "vesicle fusion" evidence=IDA

GO:0008333 "endosome to lysosome transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=TAS

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0031201 "SNARE complex" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IDA

GO:0032403 "protein complex binding" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|Q5ZMP2 STX7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
 Identities = 31/100 (31%), Positives = 56/100 (56%)

Query:    23 QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82
             Q + + I +I    A  +R+++ +GT +DT + RQ+L   +Q   QL K+T   +K    
Sbjct:    15 QRITSNIQKITQCSAEIQRILNQLGTPQDTHELRQQLQQKQQYTNQLAKETDKYIKEFGS 74

Query:    83 SDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERE 122
                 ++  Q KK++  +L  +F T L  FQ++Q+ A+E+E
Sbjct:    75 LPATSEQRQ-KKIQKDRLVGEFTTALTNFQRLQRQAAEKE 113

GO:0000149 "SNARE binding" evidence=IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0031201 "SNARE complex" evidence=IBA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

DICTYBASE|DDB_G0287733 syn7A "t-SNARE family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 148 (57.2 bits), Expect = 5.2e-15, Sum P(2) = 5.2e-15
 Identities = 36/116 (31%), Positives = 60/116 (51%)

Query:     8 NGXXXXXXXXXXXXXQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRIL 67
             NG             Q+    I QI  AV    +LV  +GT KD++D R+K+ N      
Sbjct:    74 NGYGGDDDVTNNSDYQSTTRNIQQIQNAVQILTKLVQLLGTPKDSMDTREKIRNCVDSTT 133

Query:    68 QLVKDTSAKLKSVSE-SDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERE 122
              L+   S K+K+++  + R  D ++NK +   KL ++F   LQ+F+ I Q+A+++E
Sbjct:   134 HLISSESGKVKNLTSLASRSRD-SKNKLLYQ-KLVKEFNNCLQQFKDIAQVATKKE 187

GO:0030666 "endocytic vesicle membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IEA;IDA

GO:0010008 "endosome membrane" evidence=IEA;IDA

GO:0008333 "endosome to lysosome transport" evidence=IDA

GO:0005768 "endosome" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006906 "vesicle fusion" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1S3P8 STX7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 136 (52.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 29/100 (29%), Positives = 53/100 (53%)

Query:    23 QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82
             Q +++ I +I       +R ++ +GT +DT + RQ+L   +Q   QL K+T   +K    
Sbjct:    16 QCISSNIQKITQCSVEIQRTLNQLGTPQDTPELRQQLQQKQQYTNQLAKETDKYIKEFGS 75

Query:    83 SDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERE 122
                     + +K++  +L  +F T L  FQK+Q+ A+E+E
Sbjct:    76 LPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEKE 115

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|O15400 STX7 "Syntaxin-7" [Homo sapiens (taxid:9606)]

 Score = 134 (52.2 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 29/100 (29%), Positives = 53/100 (53%)

Query:    23 QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82
             Q +++ I +I       +R ++ +GT +D+ + RQ+L   +Q   QL K+T   +K    
Sbjct:    16 QRISSNIQKITQCSVEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGS 75

Query:    83 SDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERE 122
                     + +K++  +L  +F T L  FQK+Q+ A+ERE
Sbjct:    76 LPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAERE 115

GO:0016021 "integral to membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0000149 "SNARE binding" evidence=IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0031201 "SNARE complex" evidence=IBA

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

UNIPROTKB|Q3ZBT5 STX7 "Syntaxin-7" [Bos taurus (taxid:9913)]

 Score = 132 (51.5 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
 Identities = 29/100 (29%), Positives = 53/100 (53%)

Query:    23 QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82
             Q +++ I +I    A  +R ++ +GT +D+ + RQ+L   +Q   QL K+T   +K    
Sbjct:    16 QRISSNIQKITQCSAEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKYIKEFGS 75

Query:    83 SDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERE 122
                     + +K++  +L  +F   L  FQK+Q+ A+ERE
Sbjct:    76 LPTTPSDQRQRKIQKDRLVAEFTASLTNFQKVQRQAAERE 115

GO:0031201 "SNARE complex" evidence=IBA

GO:0016079 "synaptic vesicle exocytosis" evidence=IBA

GO:0006886 "intracellular protein transport" evidence=IBA

GO:0005484 "SNAP receptor activity" evidence=IBA

GO:0000149 "SNARE binding" evidence=IBA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P93654	SYP22_ARATH	No assigned EC number	0.6064	0.9545	0.7835	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00140921 SubName- Full=Putative uncharacterized protein; (270 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
cd00179	151	cd00179, SynN, Syntaxin N-terminus domain; syntaxi	8e-18
smart00503	117	smart00503, SynN, Syntaxin N-terminal domain	4e-14
COG5325	283	COG5325, COG5325, t-SNARE complex subunit, syntaxi	4e-06
pfam05739	62	pfam05739, SNARE, SNARE domain	4e-04
pfam00804	103	pfam00804, Syntaxin, Syntaxin	0.001
smart00397	66	smart00397, t_SNARE, Helical region found in SNARE	0.003

>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

 Score = 76.6 bits (189), Expect = 8e-18
 Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 8/125 (6%)

Query: 23  QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDH-RQKLHNTRQRILQLVKDTSAKLKSVS 81
           + +   I +I+  V   ++L   + T+ D     +Q+L +  Q I +L K+   KLK + 
Sbjct: 9   EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELE 68

Query: 82  ESD------RDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAP 135
           ES+        + V++ +K + + L++ F  V+ EF K Q+   ER              
Sbjct: 69  ESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQ-LEITG 127

Query: 136 PSTTD 140
              TD
Sbjct: 128 GEATD 132

Length = 151

>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain

 Score = 65.8 bits (161), Expect = 4e-14
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 22  SQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDH-RQKLHNTRQRILQLVKDTSAKLKSV 80
            + + A I +I+  VA  ++L + + T  D     R+KL      I +L K+  AKLK +
Sbjct: 10  VEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKEL 69

Query: 81  SESD-----RDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERES 123
            + +       +  ++ +K +  KL + F+ V+ EFQ++Q+   ERE 
Sbjct: 70  EKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p. Length = 117

>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 40/179 (22%), Positives = 68/179 (37%), Gaps = 12/179 (6%)

Query: 45  AIGTSKDTLDHRQKLHNTR---------QRILQLVKDTSAKLKSVSESDRDTDVNQNKKV 95
           A+  S   L      H              I +L K  +  L+   +  +    N     
Sbjct: 49  AVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQSSF 108

Query: 96  EDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSEN-QP 154
             +KL RD  T   E Q+IQQ +++                   D     +    E+   
Sbjct: 109 LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRN--KNNDQHPLEEEEDEESLSS 166

Query: 155 FLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
              +Q  Q+  L + E+ + + +I ER+  ++ +   I + NEIF+DL  LV EQG ++
Sbjct: 167 LGSQQTLQQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELV 225

Length = 283

>gnl|CDD|203323 pfam05739, SNARE, SNARE domain

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 181 REHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN 218
           R+  L E+E  IG+  ++F D+   V EQG ++ ++ +
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDD 38

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62

>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 22  SQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDH-RQKLHNTRQRILQLVKDTSAKLKSV 80
            + +   I +I   +   ++L   I T+ D+    R++L    Q I QL +    KLKS+
Sbjct: 9   VEEIREEIQKIRQNLEELQKLHKRILTAPDSDKELREELEELTQEIKQLARAIKKKLKSL 68

Query: 81  SESDRDTDVNQNKKVED-------AKLARDFQTVL 108
            + ++      +    D       A L++ F+ VL
Sbjct: 69  QQLNKSEQGLGHSSAVDRIRKNQLANLSKKFKDVL 103

Syntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins (pfam05739), and an N-terminal domain that is featured in this entry. This domain varies between syntaxin isoforms; in syntaxin 1A it is found as three alpha-helices with a left-handed twist. It may fold back on the SNARE domain to allow the molecule to adopt a 'closed' configuration that prevents formation of the core fusion complex - it thus has an auto-inhibitory role. The function of syntaxins is determined by their localisation. They are involved in neuronal exocytosis, ER-Golgi transport and Golgi-endosome transport, for example. They also interact with other proteins as well as those involved in SNARE complexes. These include vesicle coat proteins, Rab GTPases, and tethering factors. Length = 103

>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 173 FNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN 218
              A  EER+  L ++E+ I +  +IF D+   + EQG  + ++ +
Sbjct: 2   QALAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGEQLDRIED 47

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	100.0
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	99.95
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	99.94
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	99.87
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	99.78
PF14523	102	Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.	99.7
smart00503	117	SynN Syntaxin N-terminal domain. Three-helix domai	99.62
cd00179	151	SynN Syntaxin N-terminus domain; syntaxins are ner	99.61
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	99.56
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	99.07
PF00804	103	Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins	99.05
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	99.01
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	98.96
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	93.8
PF15605	103	Toxin_52: Putative toxin 52	90.87

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.7e-33  Score=229.71  Aligned_cols=214  Identities=32%  Similarity=0.410  Sum_probs=166.4

Q ss_pred             CCchhhhcCCCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027690            1 MSFQDLQNGSRSSPSS-SSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKS   79 (220)
Q Consensus         1 msf~dle~~~~~~~~~-~f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~   79 (220)
                      ||+++.+.|+....++ +|..++.+|+..|+.|+..+..|.+.+..+||+.|++++|+++|.....++.+++++...|+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke   80 (269)
T KOG0811|consen    1 DSEAEAEGGGSTQEEPFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKE   80 (269)
T ss_pred             CcccccCCCCCCcCCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777666643333 399999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHH
Q 027690           80 VSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQ  159 (220)
Q Consensus        80 l~~~~~~~~~~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~l~~~~  159 (220)
                      +..... ....+..|++.++|.++|..++++|+.+|+...++++  .+.++.+...+....+   .+....+........
T Consensus        81 ~~~~~~-~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek--~~~~a~~s~~s~~~~~---~~~~~~~~~~~~~~~  154 (269)
T KOG0811|consen   81 IDTLRL-ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK--IPMVARGSQNSQQLDE---ESPRVDELSNNGSQS  154 (269)
T ss_pred             HHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc--ccccccccccchhhhh---hhhhhhhhhccchhh
Confidence            999876 3455889999999999999999999999999999998  3322222111111000   000000000011111


Q ss_pred             HHH-HHH-HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          160 KRQ-ELF-LLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       160 ~~q-q~~-~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                      +++ +.. ...++.+|++.++++|+.+|.+||++|.|||+||+|||.||++||++||+||+|+
T Consensus       155 ~~q~e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nv  217 (269)
T KOG0811|consen  155 QQQLEEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANV  217 (269)
T ss_pred             hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHH
Confidence            111 222 2333478899999999999999999999999999999999999999999999984

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9e-27  Score=196.00  Aligned_cols=193  Identities=17%  Similarity=0.269  Sum_probs=153.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCch
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV   89 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~~~   89 (220)
                      |+..|+.|.+.|.++...+.+|.+++.. |.++.....++.+++.+...+....+.++..|+.+....       +..++
T Consensus        38 Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~  117 (297)
T KOG0810|consen   38 FFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAG  117 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcc
Confidence            9999999999999999999999999865 677888889999999999999999999999999998731       12456


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CC-CCCCCCCC--CCCCCCCCCCchhHHHHHHHHHH
Q 027690           90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPP--SS-APPSTTDT--SGSGDFMGSENQPFLMEQKRQEL  164 (220)
Q Consensus        90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~--~~-~~~~~~~e--~~~~~~~~~e~~~l~~~~~~qq~  164 (220)
                      .+.++++...+++.|.++|..|+.++..|+++++..+.+...  +. .+++++.+  .+.|+...|.+..+.  . +++.
T Consensus       118 ~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~-~~~~  194 (297)
T KOG0810|consen  118 LRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--D-RGQA  194 (297)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--H-hhhh
Confidence            789999999999999999999999999999999976665421  11 12222221  123443344332222  1 1111


Q ss_pred             HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          165 FLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       165 ~~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                             -.-+..|++||.+|++||++|.||++||.|||+||..||+|||+||+|.
T Consensus       195 -------~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV  243 (297)
T KOG0810|consen  195 -------KQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNV  243 (297)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence                   1225799999999999999999999999999999999999999999983

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.4e-24  Score=176.94  Aligned_cols=192  Identities=21%  Similarity=0.261  Sum_probs=148.1

Q ss_pred             CC-CCchHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCc--hh
Q 027690           16 SS-SKSPSQAVAAGIFQINTAVAAFRRLVDA--IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTD--VN   90 (220)
Q Consensus        16 ~~-f~~~~~~i~~~i~~i~~~i~~l~~l~~~--l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~--~~   90 (220)
                      +| |...+++|...|..+..++.+|.+.+..  ..++.|..+-+..|+.++..|+.++++|...|+.+....+.++  ..
T Consensus        56 pP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~  135 (305)
T KOG0809|consen   56 PPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSER  135 (305)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHH
Confidence            45 9999999999999999999999999764  5788888888999999999999999999999999988654222  23


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 027690           91 QNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPP---SSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLL  167 (220)
Q Consensus        91 ~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~---~~~~~~~~~e~~~~~~~~~e~~~l~~~~~~qq~~~~  167 (220)
                      ...++.+..+..+++.+..+|+..|..|.++.+..-.....   ...+.-+     .+.+..+.+..+.    .+++.. 
T Consensus       136 ~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~-----~~dd~d~~~~~~q----e~ql~~-  205 (305)
T KOG0809|consen  136 LLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVD-----LPDDEDFSDRTFQ----EQQLML-  205 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhcccccc-----CcchhhhhhhhHH----HHHHHH-
Confidence            45778889999999999999999999999999865332210   0001110     0001111111221    122221 


Q ss_pred             hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          168 DNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       168 ~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                         ++.++..++||++||.+|.+||.|||+||+||+.||.+||++|||||||+
T Consensus       206 ---~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNv  255 (305)
T KOG0809|consen  206 ---FENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNV  255 (305)
T ss_pred             ---HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecch
Confidence               23356899999999999999999999999999999999999999999995

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=99.87  E-value=9.7e-21  Score=154.56  Aligned_cols=188  Identities=19%  Similarity=0.242  Sum_probs=133.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHH
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDA--IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKV   95 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~--l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~   95 (220)
                      |......|...+..+..++..+.+-...  +..+.|..+-.+.|..+...++..+.+|...++..-...       ....
T Consensus        36 ~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~-------~s~~  108 (283)
T COG5325          36 FILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNL-------QSSF  108 (283)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence            7899999999999999999999998653  567788777777889999999999888888887754321       1223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCC----CCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHh
Q 027690           96 EDAKLARDFQTVLQEFQKIQQLASEREST---YSPSV----PPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLD  168 (220)
Q Consensus        96 q~~~L~~~f~~~l~~f~~~q~~~~~~~k~---~~~~~----~~~~~~~~~~~e~~~~~~~~~e~~~l~~~~~~qq~~~~~  168 (220)
                      .+++|...|...+..++..|+....-.+.   |.+..    ....+-.+.+.+....  ...++      +..|+...+.
T Consensus       109 ~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l~eee~e~~~~--~~~sq------~~lqq~~l~~  180 (283)
T COG5325         109 LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPLEEEEDEESLS--SLGSQ------QTLQQQGLSN  180 (283)
T ss_pred             HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCchhhhhhhhhhh--ccchh------hHHHHhhhhh
Confidence            35788888888888888887775544332   11111    0000101100000000  00111      1223334567


Q ss_pred             hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          169 NEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       169 ~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                      ++.+|+..++.+|.++|.+|+++|.|||+||+||+++|.+||++||+||+|+
T Consensus       181 ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni  232 (283)
T COG5325         181 EELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNI  232 (283)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhh
Confidence            8899999999999999999999999999999999999999999999999995

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=99.78  E-value=3.7e-18  Score=136.01  Aligned_cols=192  Identities=15%  Similarity=0.191  Sum_probs=145.9

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhH
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDT---LDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKK   94 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~---~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k   94 (220)
                      |......|..++..+...+.++..+|+.+-+-.+.   ..++..|+.-+.+++.|-..+...++..++..-+   ...++
T Consensus        23 f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ih---l~~k~   99 (280)
T COG5074          23 FMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIH---LANKQ   99 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccc---hhhHH
Confidence            88899999999999999999999999987655443   3688999999999999999999999999874322   24466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CCCCC---CCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 027690           95 VEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPP--STTDT---SGSGDFMGSENQPFLMEQKRQELFLLDN  169 (220)
Q Consensus        95 ~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~--~~~~e---~~~~~~~~~e~~~l~~~~~~qq~~~~~~  169 (220)
                      .|-+...++|.++++.|+.++..|++.++....++..-..|.  .++.+   .+.+++++|.+ +++...++.+      
T Consensus       100 aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~ATEdeve~aInd~nG~qvfsq-alL~anr~ge------  172 (280)
T COG5074         100 AQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEATEDEVEAAINDVNGQQVFSQ-ALLNANRRGE------  172 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCccchHHHHHHhcccchHHHHHH-HHHhcCccch------
Confidence            777889999999999999999999998876555442211111  11111   11222344443 4444333332      


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          170 EIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       170 e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                       ...-+..+++||.+|.+||++|.||.++|.||+.||.+|.++||.|+.|.
T Consensus       173 -AktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~  222 (280)
T COG5074         173 -AKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNV  222 (280)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhH
Confidence             23346899999999999999999999999999999999999999998763

>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A

Probab=99.70  E-value=4.9e-16  Score=112.27  Aligned_cols=101  Identities=35%  Similarity=0.585  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHHHHHH
Q 027690           25 VAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLARDF  104 (220)
Q Consensus        25 i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L~~~f  104 (220)
                      |+..|+.|+.+|..|+++++.|||++|++++|++|+.++.+++.+++.+...|+.|..+......++..+.+.++|+++|
T Consensus         1 is~~l~~in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df   80 (102)
T PF14523_consen    1 ISSNLFKINQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDF   80 (102)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999998222356788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhc
Q 027690          105 QTVLQEFQKIQQLASERESTY  125 (220)
Q Consensus       105 ~~~l~~f~~~q~~~~~~~k~~  125 (220)
                      +.++++|+.+|+.|.++++.+
T Consensus        81 ~~~l~~fq~~q~~~~~~~k~~  101 (102)
T PF14523_consen   81 KEALQEFQKAQRRYAEKEKQT  101 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999864

>smart00503 SynN Syntaxin N-terminal domain

Probab=99.62  E-value=8.7e-15  Score=108.03  Aligned_cols=106  Identities=28%  Similarity=0.430  Sum_probs=96.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----CCchhh
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDT-LDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR-----DTDVNQ   91 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~-~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~-----~~~~~~   91 (220)
                      |+..|+.|...|..|+.+|..|.+++..++++.+. +.++.+++.+...|+.+++.|+..|+.|.....     ++++.+
T Consensus         6 F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r   85 (117)
T smart00503        6 FFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDR   85 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhh
Confidence            99999999999999999999999999998888775 678999999999999999999999999997542     124568


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027690           92 NKKVEDAKLARDFQTVLQEFQKIQQLASERES  123 (220)
Q Consensus        92 ~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k  123 (220)
                      .+++++++|+++|+++|.+|+.+|..|++++|
T Consensus        86 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k  117 (117)
T smart00503       86 TRKAQTEKLRKKFKEVMNEFQRLQRKYREREK  117 (117)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999875

Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p

>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain

Probab=99.61  E-value=6.4e-15  Score=113.63  Aligned_cols=112  Identities=25%  Similarity=0.340  Sum_probs=102.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------CCchh
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKD-TLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR------DTDVN   90 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D-~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~------~~~~~   90 (220)
                      |+..|+.|...|..|+.+|..|.+++..+++..| .+.++.+|+.+...|+.+++.|+..|+.|.....      +++..
T Consensus         4 F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~   83 (151)
T cd00179           4 FFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVD   83 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHH
Confidence            9999999999999999999999999999988887 7789999999999999999999999999987532      13356


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027690           91 QNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSV  129 (220)
Q Consensus        91 ~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~  129 (220)
                      +++++++.+|+++|+++|.+|+.+|..|+++++..+.++
T Consensus        84 r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq  122 (151)
T cd00179          84 RIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQ  122 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999877665

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=6.1e-13  Score=109.40  Aligned_cols=193  Identities=18%  Similarity=0.251  Sum_probs=119.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC----Cch--hh
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRD----TDV--NQ   91 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~----~~~--~~   91 (220)
                      |...+..|...|.....++..|..+.+.-.-+.|.+-   +|..++.-|++.+..++..|-.|..+...    ++.  ..
T Consensus        43 F~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~V---eI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~  119 (311)
T KOG0812|consen   43 FNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPV---EIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQ  119 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch---hhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhh
Confidence            9999999999999999999999999998877888763   58888888888888888888888775321    110  12


Q ss_pred             hhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCC-CCCC----CCCCC------CCCCCCCCCCCc
Q 027690           92 NKKVEDA-------KLARDFQTVLQEFQKIQQLASERESTYSPS-VPP-SSAP----PSTTD------TSGSGDFMGSEN  152 (220)
Q Consensus        92 ~~k~q~~-------~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~-~~~-~~~~----~~~~~------e~~~~~~~~~e~  152 (220)
                      +-++.+.       ..+++|++++.--...-+..+.|....... ++. +.+.    ..+..      ..+.++...   
T Consensus       120 Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~---  196 (311)
T KOG0812|consen  120 HSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDV---  196 (311)
T ss_pred             hhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhccccc---
Confidence            2233333       444555555554333333322222111110 000 0000    00000      000000000   


Q ss_pred             hhHHH----HHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          153 QPFLM----EQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       153 ~~l~~----~~~~qq~~~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                      .++.+    ..+++++..+++    ...++++|..++..||.+|.||.+||..||+||.+|||++.|||.|.
T Consensus       197 ~~ln~gd~~~~qqqQm~ll~e----s~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv  264 (311)
T KOG0812|consen  197 ESLNMGDSSNPQQQQMALLDE----SDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNV  264 (311)
T ss_pred             ccccccCCCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            01110    011233333322    25799999999999999999999999999999999999999999984

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=99.07  E-value=1.7e-10  Score=74.74  Aligned_cols=41  Identities=34%  Similarity=0.661  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690          179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNT  219 (220)
Q Consensus       179 ~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N  219 (220)
                      ++|++++..|+.+|.+|+.||.||+.+|.+||++||+||+|
T Consensus         2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~   42 (60)
T cd00193           2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDN   42 (60)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999987

>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane

Probab=99.05  E-value=3e-09  Score=76.24  Aligned_cols=91  Identities=20%  Similarity=0.313  Sum_probs=78.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCch
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDAI-GTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV   89 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l-~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~~~   89 (220)
                      |+..+++|...|..|...|..|.++++.+ .++.+...++.+|+.++.+|+.+++.|...|+.|....       .++..
T Consensus         5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~   84 (103)
T PF00804_consen    5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNE   84 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHH
Confidence            89999999999999999999999999864 44443357899999999999999999999999999861       12345


Q ss_pred             hhhhHHHHHHHHHHHHHHH
Q 027690           90 NQNKKVEDAKLARDFQTVL  108 (220)
Q Consensus        90 ~~~~k~q~~~L~~~f~~~l  108 (220)
                      .+.+++++..|+++|+++|
T Consensus        85 ~ri~~nq~~~L~~kf~~~m  103 (103)
T PF00804_consen   85 VRIRKNQVQALSKKFQEVM  103 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHC
Confidence            6899999999999999986

Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=99.01  E-value=4.9e-10  Score=73.63  Aligned_cols=40  Identities=28%  Similarity=0.562  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690          180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNT  219 (220)
Q Consensus       180 eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N  219 (220)
                      +|+++|..|+.+|.+|++||.+|+.+|.+||++||+||.|
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~   40 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDN   40 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHH
Confidence            6899999999999999999999999999999999999986

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>smart00397 t_SNARE Helical region found in SNAREs

Probab=98.96  E-value=1.7e-09  Score=71.25  Aligned_cols=45  Identities=29%  Similarity=0.597  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690          175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNT  219 (220)
Q Consensus       175 ~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N  219 (220)
                      ...+++|+.+|..|+.+|.++++||.+|+.+|.+||++||+|++|
T Consensus         4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~   48 (66)
T smart00397        4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDN   48 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            468899999999999999999999999999999999999999987

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.80  E-value=3.3  Score=34.25  Aligned_cols=172  Identities=11%  Similarity=0.108  Sum_probs=95.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC----Cchhhhh
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRD----TDVNQNK   93 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~----~~~~~~~   93 (220)
                      |+....++.....+++..+.+...+.+.+++  +.+..-..|.   ..|..+...+...+--+...+..    ......+
T Consensus         8 ~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~--~~~~~t~~lr---~~i~~~~edl~~~~~il~~~~~~~~ide~El~~R   82 (235)
T KOG3202|consen    8 FFRVKNETLKLSEEIQGLYQRRSELLKDTGS--DAEELTSVLR---RSIEEDLEDLDELISILERNPSKFGIDEFELSRR   82 (235)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHH---HHhHHHHHHHHHHHHHHHhCcccccCcHHHHHHH
Confidence            8889999999999998888888887766322  2222211121   12222223333333333322211    1233556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCC-C---CCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 027690           94 KVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTT-D---TSGSGDFMGSENQPFLMEQKRQELFLLDN  169 (220)
Q Consensus        94 k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~~~~-~---e~~~~~~~~~e~~~l~~~~~~qq~~~~~~  169 (220)
                      +.....+..+....-..|..  ..+...    ..+......+.... .   ....|.+.       .           +.
T Consensus        83 ~~~i~~lr~q~~~~~~~~~~--~~~~~~----~~r~~l~~~~~~~~~~~~~~~~~~~D~-------v-----------~~  138 (235)
T KOG3202|consen   83 RRFIDNLRTQLRQMKSKMAM--SGFANS----NIRDILLGPEKSPNLDEAMSRASGLDN-------V-----------QE  138 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--hccccc----cchhhhcCCCCCCchhhhHHHhhccCc-------H-----------HH
Confidence            66677777777766666655  011000    00000001111110 0   00001000       0           11


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690          170 EIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN  218 (220)
Q Consensus       170 e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~  218 (220)
                      ...++..++++-+..+..|+.+|.-+.++=.-++.=+.+||.++|.-++
T Consensus       139 ~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~  187 (235)
T KOG3202|consen  139 IVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDN  187 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            1234557889999999999999999999999999999999999997653

>PF15605 Toxin_52: Putative toxin 52

Probab=90.87  E-value=4.2  Score=28.94  Aligned_cols=69  Identities=10%  Similarity=0.053  Sum_probs=46.1

Q ss_pred             hhhcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 027690            5 DLQNGSRSSPSSSSKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAK   76 (220)
Q Consensus         5 dle~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~   76 (220)
                      ||...+++-++++.++.+.++.+....+......|++.   |+.|.=+...++-+..--.+++..+..+...
T Consensus        32 dl~G~pVpKp~GgywdHlqEm~da~~GL~n~~~~le~~---L~np~l~~~~r~~lq~~l~ea~~~l~kiE~~  100 (103)
T PF15605_consen   32 DLQGNPVPKPDGGYWDHLQEMQDAYRGLVNRKRTLEGS---LKNPNLSGRTRELLQSKLNEANNYLDKIEDF  100 (103)
T ss_pred             HHcCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666675556568899999999988888877777765   6666544455555555545555555555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	1e-23
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	1e-18
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	5e-17
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	1e-15
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	6e-10
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	1e-08
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	2e-08
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	2e-08
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	2e-08
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	7e-08
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 90.9 bits (225), Expect = 1e-23
 Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 9   GSRSSPSSSS--KSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRI 66
           GS  S        S  Q  +  I +I+ A A  + L+  +GT +D+   ++ L   +   
Sbjct: 1   GSSGSSGQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHST 60

Query: 67  LQLVKDTSAKLKSVSESDRDTDVNQNK--KVEDAKLARDFQTVLQEFQKIQQLASEREST 124
            QL K+T+  LK +         ++ +  +++  +L  DF   L  FQ +Q+  SE+E  
Sbjct: 61  NQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKE 120

Query: 125 YSPSVPPSS 133
                 PSS
Sbjct: 121 SIARSGPSS 129

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267

 Score = 80.9 bits (199), Expect = 1e-18
 Identities = 36/200 (18%), Positives = 70/200 (35%), Gaps = 14/200 (7%)

Query: 22  SQAVAAGIFQINTAVAAFRRLVDAI-GTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSV 80
            + +   I +I   V   +R   AI  +       +++L      I +      +KLKS+
Sbjct: 37  VEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSI 96

Query: 81  SESDRDTDVNQNKKVED-------AKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSS 133
            +S    +       +        + L+R F  V+ E+   Q    ER           +
Sbjct: 97  EQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEIT 156

Query: 134 APPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIG 193
              +T++        G+                         + IE R   + ++E  I 
Sbjct: 157 GRTTTSEELEDMLESGNPAIFASGIIMDSS------ISKQALSEIETRHSEIIKLENSIR 210

Query: 194 QANEIFKDLAVLVHEQGVVI 213
           + +++F D+A+LV  QG +I
Sbjct: 211 ELHDMFMDMAMLVESQGEMI 230

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279

 Score = 76.4 bits (187), Expect = 5e-17
 Identities = 35/207 (16%), Positives = 75/207 (36%), Gaps = 24/207 (11%)

Query: 22  SQAVAAGIFQINTAVAAFRRLVDAI---GTSKDTLDHRQKLHNTRQRILQLVKDTSAKLK 78
            + +   I  I  A+    +L        + +D     +KL +T  RI  L     A LK
Sbjct: 50  VKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLK 109

Query: 79  SVSESDRD------------TDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYS 126
            + + ++             +   + ++ + + L+R F  V+  +  +Q     R   Y 
Sbjct: 110 QIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRR---YG 166

Query: 127 PSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLR 186
            +V         + +  +   +       +    R E              I +R   ++
Sbjct: 167 ENVARQCRVVEPSLSDDAIQKVIEHGTEGIFSGMRLE------GAEAKLNEIRDRHKDIQ 220

Query: 187 EIEEQIGQANEIFKDLAVLVHEQGVVI 213
           ++E  + + +E+F D++ LV  QG +I
Sbjct: 221 QLERSLLELHEMFTDMSTLVASQGEMI 247

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196

 Score = 71.2 bits (174), Expect = 1e-15
 Identities = 30/194 (15%), Positives = 64/194 (32%), Gaps = 17/194 (8%)

Query: 23  QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDH---RQKLHNTRQRILQLVKDTSAKLKS 79
             +   + + +  +     L   + T  +       R  L N   +   L      ++KS
Sbjct: 12  SQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKS 71

Query: 80  VSESDRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERE----STYSPSVPPSSAP 135
                RD   + NK+ +     + F  ++Q+++ +     E            + P +  
Sbjct: 72  A---QRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATE 128

Query: 136 PSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQA 195
                           +Q  L   +R E      E+       + R   L ++E+ + + 
Sbjct: 129 DEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEV-------QARHQELLKLEKSMAEL 181

Query: 196 NEIFKDLAVLVHEQ 209
            ++F D+  LV EQ
Sbjct: 182 TQLFNDMEELVIEQ 195

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65

 Score = 52.6 bits (127), Expect = 6e-10
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           + + ERE  +R++E  I   NEIFKDL +++HEQG VI
Sbjct: 2   SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVI 39

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)

Query: 172 AFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           A +E  IE R   + ++E  I + +++F D+A+LV  QG +I
Sbjct: 1   ALSE--IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMI 40

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           IE R   + ++E  I + +++F D+A+LV  QG +I
Sbjct: 7   IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMI 42

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 172 AFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           A  E  ++ R   L ++E+ + +  ++F D+  LV EQ   +
Sbjct: 1   ALAE--VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENV 40

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 15/34 (44%), Positives = 25/34 (73%)

Query: 180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
            RE  ++++E  I   N+IFKDLA+++H+QG +I
Sbjct: 3   MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLI 36

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83

 Score = 47.4 bits (113), Expect = 7e-08
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 166 LLDNEIAFNE-AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           ++D+ I+    + IE R   + ++E  I + +++F D+A+LV  QG +I
Sbjct: 3   IMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMI 51

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 178 IEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVI 213
           IE R   + ++E  I + +++F D+A+LV  QG +I
Sbjct: 16  IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMI 51

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 28/201 (13%), Positives = 54/201 (26%), Gaps = 81/201 (40%)

Query: 51  DTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKLA----RDFQT 106
           D      +     + IL + +D             + D    K V+D   +     +   
Sbjct: 8   DFETGEHQYQY--KDILSVFEDAFVD---------NFDC---KDVQDMPKSILSKEEIDH 53

Query: 107 VLQEFQKIQQ-------LASERESTYSPSVPPSSAPPSTTDTSGSGDFMGS---ENQPFL 156
           ++     +         L S++E                        F+      N  FL
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQ-------------------KFVEEVLRINYKFL 94

Query: 157 MEQKRQELFLLDNEIAFNEAI-IEEREHGLREIEEQIGQANEIFKDLAV----------- 204
           M   + E      + +    + IE+R        +++   N++F    V           
Sbjct: 95  MSPIKTE----QRQPSMMTRMYIEQR--------DRLYNDNQVFAKYNVSRLQPYLKLRQ 142

Query: 205 ----LVHEQGVVI------GK 215
               L   + V+I      GK
Sbjct: 143 ALLELRPAKNVLIDGVLGSGK 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	99.97
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	99.96
1fio_A	196	SSO1 protein; four helix bundle, alpha helix, memb	99.95
2dnx_A	130	Syntaxin-12; snare, HABC domain, UP and DOWN three	99.87
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	99.71
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	99.71
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	99.7
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	99.7
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	99.68
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	99.66
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	99.59
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	99.57
1ez3_A	127	Syntaxin-1A; three helix bundle, endocytosis/exocy	99.49
1s94_A	180	S-syntaxin; three helix bundle, structural plastic	99.44
1hs7_A	97	Syntaxin VAM3; UP-and-DOWN three-helix bundle inse	99.36
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	89.26
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	89.22
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	87.88
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	86.09

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=99.97  E-value=2.2e-30  Score=216.37  Aligned_cols=193  Identities=20%  Similarity=0.206  Sum_probs=149.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCch
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIG-TSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV   89 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~-t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~~~   89 (220)
                      |+..|++|...|..|..++..|+++++.++ ++.+...++.+|+.++.+|+.+++.|...|+.|....       .++..
T Consensus        33 F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e  112 (267)
T 1dn1_B           33 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSAD  112 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHH
Confidence            999999999999999999999999998755 4655568999999999999999999999999997641       12233


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-CCC-CCCCCCC--CCCCCCCCCCchhHHHHHHHHHHH
Q 027690           90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPP-SSA-PPSTTDT--SGSGDFMGSENQPFLMEQKRQELF  165 (220)
Q Consensus        90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~-~~~-~~~~~~e--~~~~~~~~~e~~~l~~~~~~qq~~  165 (220)
                      .+.+++++..|+++|++++..|+.+|..|+++++..+.+... .++ +++++.+  .+.|.+..|.+..++. .  +   
T Consensus       113 ~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~-~--~---  186 (267)
T 1dn1_B          113 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMD-S--S---  186 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCC-S--H---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHh-h--H---
Confidence            488999999999999999999999999999999875543211 011 1111111  0123334444321221 0  0   


Q ss_pred             HHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          166 LLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       166 ~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                          .....+.+|++||++|.+||++|.|||+||.|||+||++||++||+||+|.
T Consensus       187 ----~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv  237 (267)
T 1dn1_B          187 ----ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV  237 (267)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence                112346799999999999999999999999999999999999999999983

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=99.96  E-value=6.8e-29  Score=208.88  Aligned_cols=190  Identities=18%  Similarity=0.240  Sum_probs=144.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---------
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTL--DHRQKLHNTRQRILQLVKDTSAKLKSVSESDR---------   85 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~--~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~---------   85 (220)
                      |+..+++|...|..|+.+|..|.++++. |+++.+..  .++.+|+.++..|+.+++.|+..|+.|.....         
T Consensus        46 F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~  125 (279)
T 2xhe_B           46 FFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTFE  125 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            9999999999999999999999999975 78888777  79999999999999999999999999997321         


Q ss_pred             --CCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC-CC-CCCC--CCCCCCCCCchhHHHH
Q 027690           86 --DTD-VNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPP-ST-TDTS--GSGDFMGSENQPFLME  158 (220)
Q Consensus        86 --~~~-~~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~-~~-~~e~--~~~~~~~~e~~~l~~~  158 (220)
                        ++. ..+++++++.+|+++|++++..|+.+|..|.++++....+......+. .+ +.+.  ..|....     |.+ 
T Consensus       126 ~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~ee~~~~~e~g~~~~-----f~q-  199 (279)
T 2xhe_B          126 DGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSDDAIQKVIEHGTEGI-----FSG-  199 (279)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSSTTHHHHHHHC-------------
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCchHH-----HHH-
Confidence              111 347899999999999999999999999999999997765542211111 11 0000  0011111     111 


Q ss_pred             HHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          159 QKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       159 ~~~qq~~~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                         ..  .  ......+.+|++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus       200 ---~~--~--~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv  254 (279)
T 2xhe_B          200 ---MR--L--EGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSV  254 (279)
T ss_dssp             -----------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHH
T ss_pred             ---HH--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence               00  0  0112334689999999999999999999999999999999999999999983

>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=99.95  E-value=6.3e-28  Score=192.99  Aligned_cols=182  Identities=15%  Similarity=0.191  Sum_probs=136.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhH
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTL--DHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKK   94 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~--~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k   94 (220)
                      |+..+++|+..|..|+.++..|.++++. |+++.+..  .++.+|+.++.+|+.+++.|+..|+.|....   ...+.++
T Consensus         7 f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~---~~~r~~k   83 (196)
T 1fio_A            7 FMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG---IHDTNKQ   83 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---hhhhHHH
Confidence            9999999999999999999999999998 55555443  6899999999999999999999999999864   2468999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCC--CCCCC--CC-CCCCCCCCchhHHHHHHHHHHHHHhh
Q 027690           95 VEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPP--STTDT--SG-SGDFMGSENQPFLMEQKRQELFLLDN  169 (220)
Q Consensus        95 ~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~--~~~~e--~~-~~~~~~~e~~~l~~~~~~qq~~~~~~  169 (220)
                      +++.+|+++|++++..|+.+|..|.+++|..+.+......|.  +.+.+  .. .++...|. ++++....+       .
T Consensus        84 ~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~~~~e~~~~~~~~~~~~~f~-~~~~~~~~~-------~  155 (196)
T 1fio_A           84 AQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFS-QALLNANRR-------G  155 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHH-HHTC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHcCCchhHHH-HHHHhccch-------H
Confidence            999999999999999999999999999987654321100011  00000  00 00000000 011110000       1


Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027690          170 EIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQG  210 (220)
Q Consensus       170 e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQG  210 (220)
                      .+...+.+|++||++|++||++|.|||+||+|||+||++||
T Consensus       156 ~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG  196 (196)
T 1fio_A          156 EAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            22345689999999999999999999999999999999998

>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=5.9e-21  Score=142.65  Aligned_cols=117  Identities=25%  Similarity=0.352  Sum_probs=107.0

Q ss_pred             CCCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--CCch
Q 027690           13 SPSSS-SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR--DTDV   89 (220)
Q Consensus        13 ~~~~~-f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~--~~~~   89 (220)
                      ++++| |..+++.|+.+|++|+.+|..|+++++.|||++|++++|++||.+..+|+.+++++...||+|..+.+  .+.+
T Consensus         6 ~~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~   85 (130)
T 2dnx_A            6 SGQLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSE   85 (130)
T ss_dssp             SCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHH
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence            34455 99999999999999999999999999999999999999999999999999999999999999999863  2346


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 027690           90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSV  129 (220)
Q Consensus        90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~  129 (220)
                      ++.++++.++|+++|+.++++|+.+|+.+.+++|..+..+
T Consensus        86 ~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~~a  125 (130)
T 2dnx_A           86 QRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIARS  125 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            6889999999999999999999999999999998765544

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=99.71  E-value=9.2e-18  Score=111.38  Aligned_cols=46  Identities=28%  Similarity=0.486  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       175 ~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                      +.+|++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus         4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv   49 (68)
T 1n7s_B            4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV   49 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999983

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=99.71  E-value=1e-17  Score=111.44  Aligned_cols=46  Identities=22%  Similarity=0.363  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       175 ~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                      +..|++|+++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus         2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv   47 (69)
T 3b5n_B            2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNV   47 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999999983

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=99.70  E-value=5.8e-18  Score=111.26  Aligned_cols=45  Identities=42%  Similarity=0.695  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       176 ~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                      ++|++|+++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus         2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv   46 (65)
T 1gl2_B            2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANV   46 (65)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999983

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=99.70  E-value=1.5e-17  Score=113.11  Aligned_cols=46  Identities=28%  Similarity=0.486  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       175 ~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                      +.+|++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus         2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv   47 (77)
T 1jth_B            2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV   47 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            4689999999999999999999999999999999999999999983

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=99.68  E-value=3.3e-17  Score=112.86  Aligned_cols=47  Identities=28%  Similarity=0.473  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          174 NEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       174 ~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                      .+.+|++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus        12 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv   58 (83)
T 1sfc_B           12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV   58 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999983

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=99.66  E-value=4.8e-17  Score=108.79  Aligned_cols=42  Identities=36%  Similarity=0.643  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       179 ~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                      ++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus         2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv   43 (71)
T 2nps_B            2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANV   43 (71)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            589999999999999999999999999999999999999983

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=99.59  E-value=1.3e-15  Score=110.15  Aligned_cols=47  Identities=28%  Similarity=0.473  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 027690          174 NEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNTK  220 (220)
Q Consensus       174 ~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N~  220 (220)
                      .++++++||++|.+||++|.|||+||+|||+||++||++||+||+|.
T Consensus        12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv   58 (109)
T 3hd7_B           12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNV   58 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999983

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=99.57  E-value=8.7e-15  Score=121.54  Aligned_cols=191  Identities=19%  Similarity=0.232  Sum_probs=138.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-------CCch
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDR-------DTDV   89 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~-------~~~~   89 (220)
                      |+..++.|...|.+|...+..|.+++.. +.++.+.......++.++..++.++..|...++.|..+..       ....
T Consensus        45 f~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~  124 (279)
T 3c98_B           45 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSAD  124 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHH
Confidence            8899999999999999999999999875 6777777778889999999999999999988888876421       1223


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCCCCCCCCC-CCCCCCCCCCCchhHHHHHHHHHH
Q 027690           90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSV----PPSSAPPSTTD-TSGSGDFMGSENQPFLMEQKRQEL  164 (220)
Q Consensus        90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~----~~~~~~~~~~~-e~~~~~~~~~e~~~l~~~~~~qq~  164 (220)
                      .+....+...|...|.....+|...+..|...++..+.+.    ..+..+..... ...........  ....       
T Consensus       125 i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------  195 (279)
T 3c98_B          125 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFAS--GIIM-------  195 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSCCTTSSTT--TSCS-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHhhhhHHHHH--HHHH-------
Confidence            4667788899999999999999999999987776433211    11100000000 00000000000  0000       


Q ss_pred             HHHhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccC
Q 027690          165 FLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTNT  219 (220)
Q Consensus       165 ~~~~~e~~~~~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~N  219 (220)
                        ....+......+++|+.+|.+|+.+|.+|+++|.+|+.+|.+||+++|+|++|
T Consensus       196 --~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~n  248 (279)
T 3c98_B          196 --DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYN  248 (279)
T ss_dssp             --CSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00111223468999999999999999999999999999999999999999987

>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*

Probab=99.49  E-value=5.9e-13  Score=98.73  Aligned_cols=109  Identities=20%  Similarity=0.226  Sum_probs=97.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCch
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV   89 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~~~   89 (220)
                      |+..|++|...|..|...|..|.+++.. |.++.....++.+|+.++.+|+.+++.|+..|+.|....       .+++.
T Consensus        10 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~   89 (127)
T 1ez3_A           10 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSAD   89 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHH
Confidence            9999999999999999999999999886 677777778999999999999999999999999998632       12334


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 027690           90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYS  126 (220)
Q Consensus        90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~  126 (220)
                      .|.++.++..|++.|+++|..|+.+|..|+++++..+
T Consensus        90 ~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ri  126 (127)
T 1ez3_A           90 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI  126 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5889999999999999999999999999999998754

>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1

Probab=99.44  E-value=2.2e-13  Score=107.08  Aligned_cols=113  Identities=14%  Similarity=0.162  Sum_probs=92.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCch
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV   89 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~~~   89 (220)
                      |+..|+.|...|..|..+|..|.+++.. |+++.+...++.+|+.++.+|+.+++.|+..|+.|....       .+++.
T Consensus        41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~  120 (180)
T 1s94_A           41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSAD  120 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHH
Confidence            9999999999999999999999999987 788887788999999999999999999999999999632       12344


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 027690           90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVP  130 (220)
Q Consensus        90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~  130 (220)
                      .++++.++..|+++|+++|..|+.+|..|++++|..+.++.
T Consensus       121 ~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq~  161 (180)
T 1s94_A          121 LRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQM  161 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999998876653

>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1

Probab=99.36  E-value=1.4e-11  Score=86.18  Aligned_cols=90  Identities=18%  Similarity=0.276  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHH
Q 027690           22 SQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLH-NTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKL  100 (220)
Q Consensus        22 ~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~-~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L  100 (220)
                      ..+....|.++..+|..|++++..|||.+|++.||.+|+ .++.+|+.+.+++.    .|..++           +.++|
T Consensus         5 ~~d~~~li~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~----~l~~l~-----------qkeRL   69 (97)
T 1hs7_A            5 TKELSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIE----SNILIH-----------QNGKL   69 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH----HSTHHH-----------HCHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH----Hhcccc-----------hhhHH
Confidence            356677788888888899999999999999999999999 99999999999888    332221           57899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 027690          101 ARDFQTVLQEFQKIQQLASERESTYS  126 (220)
Q Consensus       101 ~~~f~~~l~~f~~~q~~~~~~~k~~~  126 (220)
                      .++|..+++.|+.+|+.|.++.+.++
T Consensus        70 ~~dF~~l~~~fQ~~qr~y~ek~~e~~   95 (97)
T 1hs7_A           70 SADFKNLKTKYQSLQQSYNQRKSLFP   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999764

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=89.26  E-value=0.24  Score=32.98  Aligned_cols=43  Identities=14%  Similarity=0.254  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690          176 AIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN  218 (220)
Q Consensus       176 ~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~  218 (220)
                      .++++-++.+..|..+|..|..|-.+++.=|.+|..+||.|+.
T Consensus        12 ~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~   54 (82)
T 2nps_D           12 NMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSH   54 (82)
T ss_dssp             ------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            4556667788999999999999999999999999999999875

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=89.22  E-value=0.48  Score=29.94  Aligned_cols=42  Identities=19%  Similarity=0.402  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690          177 IIEEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN  218 (220)
Q Consensus       177 ~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~  218 (220)
                      ++++-++.+..|..+|..|+.|-.+++.=|..|..+||.|+.
T Consensus         3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~   44 (65)
T 1gl2_D            3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLAN   44 (65)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            345566778899999999999999999999999999999875

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=87.88  E-value=1.2  Score=28.08  Aligned_cols=39  Identities=18%  Similarity=0.314  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690          180 EREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN  218 (220)
Q Consensus       180 eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~  218 (220)
                      +-++.+..|...|..|+.|-.+++.=|..|..+||+|+.
T Consensus         7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~   45 (66)
T 1n7s_D            7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIME   45 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445678889999999999999999999999999999975

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=86.09  E-value=2.2  Score=28.51  Aligned_cols=40  Identities=18%  Similarity=0.314  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 027690          179 EEREHGLREIEEQIGQANEIFKDLAVLVHEQGVVIGKMTN  218 (220)
Q Consensus       179 ~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQGe~vD~IE~  218 (220)
                      .+-++.+..|...|..|+.|-.+|+.=|..|..+||+|+.
T Consensus        25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~   64 (87)
T 1sfc_D           25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIME   64 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456677889999999999999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d1fioa_	196	a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c	1e-17

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (184), Expect = 1e-17
 Identities = 29/188 (15%), Positives = 67/188 (35%), Gaps = 5/188 (2%)

Query: 23  QAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSE 82
             +   + + +  +     L   + T  +  +    L ++    +    D   KLK+  +
Sbjct: 12  SQINRDLDKYDHTINQVDSLHKRLLTEVNE-EQASHLRHSLDNFVAQATDLQFKLKNEIK 70

Query: 83  S-DRDTDVNQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDT 141
           S  RD   + NK+ +     + F  ++Q+++ +     E     +         P  T+ 
Sbjct: 71  SAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMII-QPEATED 129

Query: 142 SGSGDFMGSENQPFLMEQKRQELFLLDNEIAFNEAIIEEREHGLREIEEQIGQANEIFKD 201
                      Q    +         + + A  E  ++ R   L ++E+ + +  ++F D
Sbjct: 130 EVEAAISDVGGQQIFSQALLNANRRGEAKTALAE--VQARHQELLKLEKSMAELTQLFND 187

Query: 202 LAVLVHEQ 209
           +  LV EQ
Sbjct: 188 MEELVIEQ 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1fioa_	196	Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.89
d1ez3a_	124	Syntaxin 1A N-terminal domain {Rat (Rattus norvegi	99.44
d1hs7a_	97	Vam3p N-terminal domain {Baker's yeast (Saccharomy	98.34

>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.6e-24  Score=168.94  Aligned_cols=187  Identities=16%  Similarity=0.153  Sum_probs=135.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhH
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDAIGTSKDT---LDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKK   94 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~---~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k   94 (220)
                      |++.+++|...|..|+..+..|.+++..++++.+.   ..++.+|+.++.+++.+++.|...++.+....   +..+.++
T Consensus         7 f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~---~~~~~~~   83 (196)
T d1fioa_           7 FMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG---IHDTNKQ   83 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cchHHHH
Confidence            88999999999999999999999999887665443   46888999999999999999999999997643   3467889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhHhH
Q 027690           95 VEDAKLARDFQTVLQEFQKIQQLASERESTYSPSVPPSSAPPSTTDTSGSGDFMGSENQPFLMEQKRQELFLLDNEIAFN  174 (220)
Q Consensus        95 ~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~l~~~~~~qq~~~~~~e~~~~  174 (220)
                      +++.+|+++|..++..|+.+|..|.++++..+.+......|.....+...+.......+.+.. .....  ....+....
T Consensus        84 ~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~  160 (196)
T d1fioa_          84 AQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDEVEAAISDVGGQQIFSQ-ALLNA--NRRGEAKTA  160 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHTSHHHHHHHHHH-HTC--------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccchhhhHhhccccchHHHHH-HHHHH--HHHHHHHHH
Confidence            999999999999999999999999999987654332111111100000000000000000100 00000  111234566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027690          175 EAIIEEREHGLREIEEQIGQANEIFKDLAVLVHEQG  210 (220)
Q Consensus       175 ~~~i~eR~~eI~~Ie~~I~eln~IF~dLa~lV~eQG  210 (220)
                      +.+|++|+++|.+||++|.|||+||+|||+||++|.
T Consensus       161 ~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ~  196 (196)
T d1fioa_         161 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ  196 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC
Confidence            789999999999999999999999999999999983

>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.6e-12  Score=94.37  Aligned_cols=109  Identities=20%  Similarity=0.226  Sum_probs=96.6

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCch
Q 027690           18 SKSPSQAVAAGIFQINTAVAAFRRLVDA-IGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESD-------RDTDV   89 (220)
Q Consensus        18 f~~~~~~i~~~i~~i~~~i~~l~~l~~~-l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~-------~~~~~   89 (220)
                      |+..|+.|...|..|..+|..|..++.. |.++...+.++.+++.++..|+...+.|...|+.|....       .+++.
T Consensus         8 Ff~eV~~Ir~~I~~i~~~v~~i~~~~~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~   87 (124)
T d1ez3a_           8 FFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSAD   87 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCHH
Confidence            8999999999999999999999999864 677776778899999999999999999999999996531       22345


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 027690           90 NQNKKVEDAKLARDFQTVLQEFQKIQQLASERESTYS  126 (220)
Q Consensus        90 ~~~~k~q~~~L~~~f~~~l~~f~~~q~~~~~~~k~~~  126 (220)
                      .|++++++..|++.|+++|.+|+.+|..|+++|+..+
T Consensus        88 ~Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~~~k~rI  124 (124)
T d1ez3a_          88 LRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI  124 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            6899999999999999999999999999999998653

>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vam3p N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=9.1e-06  Score=53.62  Aligned_cols=90  Identities=18%  Similarity=0.301  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhHHHHHHH
Q 027690           21 PSQAVAAGIFQINTAVAAFRRLVDAIGTSKDTLDHRQKLHNTRQRILQLVKDTSAKLKSVSESDRDTDVNQNKKVEDAKL  100 (220)
Q Consensus        21 ~~~~i~~~i~~i~~~i~~l~~l~~~l~t~~D~~~~r~~i~~l~~~i~~l~~~~~~~lk~l~~~~~~~~~~~~~k~q~~~L  100 (220)
                      ...++.+.|.++..++.-|++-+..+||.+|+..+|.+|+      ++++-+|....+++....        .-...++.
T Consensus         4 ~~~ev~~ll~tL~~~i~lLkk~~~kiGT~rD~~~LR~kIe------telIP~~~~~~~~i~~~~--------~l~~~dK~   69 (97)
T d1hs7a_           4 KTKELSNLIETFAEQSRVLEKECTKIGSKRDSKELRYKIE------TELIPNCTSVRDKIESNI--------LIHQNGKL   69 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHH------HTHHHHHHHHHHHHHHST--------HHHHCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHH------HhhhhhHHHHHHHHHhcc--------CcccCchH
Confidence            4678999999999999999999999999999999999997      334455555555554421        11233799


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 027690          101 ARDFQTVLQEFQKIQQLASEREST  124 (220)
Q Consensus       101 ~~~f~~~l~~f~~~q~~~~~~~k~  124 (220)
                      +++|+.+..+|+.+++.|..+.-.
T Consensus        70 ~~DF~~L~~~l~~l~~~Y~~Rk~~   93 (97)
T d1hs7a_          70 SADFKNLKTKYQSLQQSYNQRKSL   93 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999988653