Citrus Sinensis ID: 027693

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MHPLPSICKLKDKKKQHKKSKKYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYLKFPWAQVEDYE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHcHHHHHHccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccHEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mhplpsicklkdkkkQHKKSKKYRAaemsssfgihslkalpslsstrcvtkssplciickhkpntkpaklnkkltgTTQKAIDcfdekksslgIQAGAVLLATLeqpalavtgennheIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFfpglllwapflnfrklprdpsmkapwdtpadpskvknaylkfpwaqvedye
Flexible Loop (DISEMBL)
mhplpsicklkdkkkqhKKSKKYraaemsssfgihslkalpslssTRCVTKSSplciickhkpntkpaklnkklTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKApwdtpadpskvknAYLKFPwaqvedye
Low Complexity Region (SEG)
MHPLPSICklkdkkkqhkkskkYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLfemyvqfmfvfmffPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYLKFPWAQVEDYE
Disordered region (IsUnstruct)
**********************************************RCVTKSSPLCIICKHK************TGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKL*********************AYLKFPWA******
Disordered Region (DISOPRED)
****PSI*********************SSSFGIHSL******************************************************LGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPR***************KVKNAYLKFPWA******
Disordered Region (DISEMBL)
MHPLPSICKL****************EMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYLKFPWAQVEDYE
Disordered Region (DISPRO)
**PLPSICKLKDKKKQHKK*KKYRAAEMSSSFGIHSLKALPSLSS*******SPLC**********PAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYLKFPWAQV****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHPLPSICKLKDKKKQHKKSKKYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYLKFPWAQVEDYE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q8DKZ3	76	NAD(P)H-quinone oxidoredu	yes	no	0.272	0.789	0.466	1e-07
B2J0I9	70	NAD(P)H-quinone oxidoredu	yes	no	0.3	0.942	0.402	9e-07
Q8YMW5	70	NAD(P)H-quinone oxidoredu	yes	no	0.240	0.757	0.415	2e-06
Q3MBD4	70	NAD(P)H-quinone oxidoredu	yes	no	0.240	0.757	0.433	2e-06
Q7V2B1	77	NAD(P)H-quinone oxidoredu	yes	no	0.25	0.714	0.446	1e-05
Q7V897	83	NAD(P)H-quinone oxidoredu	no	no	0.3	0.795	0.348	3e-05
A2CAP6	83	NAD(P)H-quinone oxidoredu	no	no	0.222	0.590	0.428	5e-05
Q3AKY6	83	NAD(P)H-quinone oxidoredu	yes	no	0.290	0.771	0.343	7e-05
Q3AYG7	83	NAD(P)H-quinone oxidoredu	yes	no	0.272	0.722	0.35	0.0001
Q8KX34	77	NAD(P)H-quinone oxidoredu	yes	no	0.245	0.701	0.444	0.0001

>sp|Q8DKZ3|NDHL_THEEB NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhL PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 35/60 (58%)

Query: 129 GIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRD 188
           G +A  Y L++P I+  +L  RWY    FE    +  V  FFPGLLL APF+NFR  PR 
Sbjct: 14  GALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFRPQPRS 73

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|B2J0I9|NDHL_NOSP7 NAD(P)H-quinone oxidoreductase subunit L OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhL PE=3 SV=1

 Score = 53.9 bits (128), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 121 LTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFL 180
           + VAL+ + I+A  Y L++P  ++ +L+ RWY     E  + +  VF FFPGLL+ +PF 
Sbjct: 1   MIVALLYL-ILAGAYLLVIPIAVLFYLKQRWYVASSIERLLMYFLVFFFFPGLLVLSPFA 59

Query: 181 NFRKLPR 187
           NFR   R
Sbjct: 60  NFRPQRR 66

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8YMW5|NDHL_NOSS1 NAD(P)H-quinone oxidoreductase subunit L OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ndhL PE=3 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 135 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPR 187
           Y L++P  ++ +L++RWY     E    +  VF+FFPGLL+ +PF+N R  PR
Sbjct: 14  YLLVVPVALLFYLKLRWYVVSSIERTFMYFLVFLFFPGLLVLSPFVNLRPRPR 66

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q3MBD4|NDHL_ANAVT NAD(P)H-quinone oxidoreductase subunit L OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhL PE=3 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 135 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPR 187
           Y L++P  +M +L+ RWY     E    +  VF+FFPGLL+ +PF+N R  PR
Sbjct: 14  YLLVVPVALMFYLKQRWYVVSSVERTFMYFLVFLFFPGLLVLSPFVNLRPRPR 66

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q7V2B1|NDHL_PROMP NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndhL PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 128 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 183
           VGI++  Y L++P I+  W+  RW     FE  + +  VF+FFPGL+L++PFLN R
Sbjct: 16  VGIVSI-YLLVIPLILFYWMNNRWNVMGKFERLIVYGLVFLFFPGLILFSPFLNLR 70

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q7V897|NDHL_PROMM NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhL PE=3 SV=2

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 118 EIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWA 177
            I+  + L    ++   Y +++P ++ +W+  RW+    FE    +  VF+FFPGL+L+A
Sbjct: 11  SINSLMVLAAYALLGGLYLIVVPLLLYSWMNRRWHCMGKFERLSAYGLVFLFFPGLILFA 70

Query: 178 PFLNFR 183
           PFLN R
Sbjct: 71  PFLNLR 76

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Prochlorococcus marinus (strain MIT 9313) (taxid: 74547)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|A2CAP6|NDHL_PROM3 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhL PE=3 SV=2

 Score = 47.8 bits (112), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 135 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 183
           Y +++P ++ +W+  RW+    FE    +  VF+FFPGL+L+APFLN R
Sbjct: 28  YLIVVPLLLYSWMNRRWHCMGKFERLSAYGMVFLFFPGLILFAPFLNLR 76

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Prochlorococcus marinus (strain MIT 9303) (taxid: 59922)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q3AKY6|NDHL_SYNSC NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain CC9605) GN=ndhL PE=3 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 120 DLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPF 179
           D  + L+   ++   Y +++P  +  W+  RW++    E    +  VF FFPG++L+APF
Sbjct: 13  DTLLVLLAYTVLGGLYLVVVPLALYAWMNQRWHRMGKLERLGIYGMVFFFFPGMILFAPF 72

Query: 180 LNFR 183
           LNFR
Sbjct: 73  LNFR 76

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus sp. (strain CC9605) (taxid: 110662)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q3AYG7|NDHL_SYNS9 NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain CC9902) GN=ndhL PE=3 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 124 ALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 183
            L+  G +   Y + +P  +  W+ +RWY+   FE    +  VF+FFPG++++APF+N R
Sbjct: 17  VLLAYGAVLGTYLIAVPLALYAWINLRWYRMSKFERLGVYGLVFLFFPGMIVFAPFINLR 76

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus sp. (strain CC9902) (taxid: 316279)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8KX34|NDHL_SYNP2 NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhL PE=3 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 135 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRD 188
           Y L++P  +  +L  RWY     E  V + FVF  FPG+LL +PFLNFR   R+
Sbjct: 23  YLLVLPAGLYFYLNNRWYVASSIERLVMYFFVFFLFPGMLLLSPFLNFRPRRRE 76

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
255573740	187	conserved hypothetical protein [Ricinus	0.85	1.0	0.606	1e-57
225424301	188	PREDICTED: uncharacterized protein LOC10	0.854	1.0	0.590	1e-57
297838891	191	hypothetical protein ARALYDRAFT_894894 [	0.840	0.968	0.586	6e-57
110739481	187	hypothetical protein [Arabidopsis thalia	0.840	0.989	0.575	4e-56
15223241	191	inorganic carbon transport protein-relat	0.840	0.968	0.575	5e-56
195606680	192	hypothetical protein [Zea mays]	0.845	0.968	0.584	3e-53
224108305	187	predicted protein [Populus trichocarpa]	0.840	0.989	0.579	2e-52
449464794	201	PREDICTED: uncharacterized protein LOC10	0.831	0.910	0.567	7e-50
351722379	195	uncharacterized protein LOC100526956 [Gl	0.854	0.964	0.520	8e-46
388519383	193	unknown [Lotus japonicus]	0.859	0.979	0.535	3e-41

>gi|255573740|ref|XP_002527791.1| conserved hypothetical protein [Ricinus communis] gi|223532826|gb|EEF34601.1| conserved hypothetical protein [Ricinus communis]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 117/193 (60%), Positives = 140/193 (72%), Gaps = 6/193 (3%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDE 87
           MS S   H  +ALPSLS  R   + +P  I  K+KP    +KL+KK++   +      D 
Sbjct: 1   MSCSLSFHIPQALPSLSPHR---RKAPFYISSKYKP-VHNSKLDKKVSSIRRSPEGYNDV 56

Query: 88  KKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWL 147
           KK SL +Q GA   AT+EQ ALAVTG NN E DLT  LI+  I+AFWYFLIMPPIIMNW+
Sbjct: 57  KKFSLAVQLGA-FFATVEQSALAVTGVNNEE-DLTWVLIQSAIVAFWYFLIMPPIIMNWM 114

Query: 148 RVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNA 207
           RVRWY+RKLFEMY+QFMF F+FFPG+LLWAPFLNFRK PRDPSMK PW TP +PS++KN 
Sbjct: 115 RVRWYRRKLFEMYLQFMFTFIFFPGILLWAPFLNFRKFPRDPSMKYPWSTPENPSQIKND 174

Query: 208 YLKFPWAQVEDYE 220
           Y KFP+A  EDY+
Sbjct: 175 YAKFPYATPEDYD 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424301|ref|XP_002284666.1| PREDICTED: uncharacterized protein LOC100259429 [Vitis vinifera] gi|297737670|emb|CBI26871.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 140/193 (72%), Gaps = 5/193 (2%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDE 87
           MS SF I   KALP L  ++C   S  +  I K   + KP K    +T   +K++D    
Sbjct: 1   MSCSFSIQIPKALPCLFHSQCKFPSLSISSIQKQSHHAKPIK---TITSIIKKSVDYIST 57

Query: 88  KKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWL 147
            K SL IQ GA LLAT+E+PA AVTG N  E+DL   LI++GI+ FWYFLIMPPIIMNWL
Sbjct: 58  NKHSLAIQVGA-LLATVEKPAFAVTGVNK-EVDLIWVLIQLGIVLFWYFLIMPPIIMNWL 115

Query: 148 RVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNA 207
           R+RWY+R L EMY+QFMFVFMFFPG++LWAPFLNFRK PRDPSMK PW TP +P++VKNA
Sbjct: 116 RIRWYERNLLEMYLQFMFVFMFFPGVMLWAPFLNFRKFPRDPSMKYPWSTPQNPTQVKNA 175

Query: 208 YLKFPWAQVEDYE 220
           +LK+P+A+ EDY 
Sbjct: 176 FLKYPFAKPEDYR 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838891|ref|XP_002887327.1| hypothetical protein ARALYDRAFT_894894 [Arabidopsis lyrata subsp. lyrata] gi|297333168|gb|EFH63586.1| hypothetical protein ARALYDRAFT_894894 [Arabidopsis lyrata subsp. lyrata]

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 112/191 (58%), Positives = 137/191 (71%), Gaps = 6/191 (3%)

Query: 30  SSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKK 89
            S G+++  ALPSLS  +  +  SPLC+    KPN     L   +     KA D F  KK
Sbjct: 5   GSLGLYAPNALPSLS-LKPRSVKSPLCVTSYSKPNDT---LLHNVAKIRAKAGDLFGAKK 60

Query: 90  SSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRV 149
           + L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWLRV
Sbjct: 61  TVLAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 118

Query: 150 RWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYL 209
           RWY+RK FEMY+QFMFVFMFFPGLLLWAPFLNFRK PRDPSMK PWD P DP  +KN YL
Sbjct: 119 RWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPSMKNPWDKPTDPDSIKNNYL 178

Query: 210 KFPWAQVEDYE 220
           K+P+A  EDY+
Sbjct: 179 KYPFATPEDYD 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110739481|dbj|BAF01650.1| hypothetical protein [Arabidopsis thaliana]

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 135/191 (70%), Gaps = 6/191 (3%)

Query: 30  SSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKK 89
            S G+++  ALPSLS  +  +  SP CI    KPN     L   +     KA D    KK
Sbjct: 1   GSLGLYAPNALPSLS-LKPRSVKSPFCITSHTKPNDT---LLHNVNKMRAKACDILGAKK 56

Query: 90  SSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRV 149
           + L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWLRV
Sbjct: 57  TILAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 114

Query: 150 RWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYL 209
           RWY+RK FEMY+QFMFVFMFFPGLLLWAPFLNFRK PRDP+MK PWD P DP  +KN YL
Sbjct: 115 RWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYL 174

Query: 210 KFPWAQVEDYE 220
           K+P+A  EDY+
Sbjct: 175 KYPYATPEDYD 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223241|ref|NP_177233.1| inorganic carbon transport protein-related protein [Arabidopsis thaliana] gi|12324754|gb|AAG52336.1|AC011663_15 unknown protein; 17323-16389 [Arabidopsis thaliana] gi|37202090|gb|AAQ89660.1| At1g70760 [Arabidopsis thaliana] gi|332196990|gb|AEE35111.1| inorganic carbon transport protein-related protein [Arabidopsis thaliana]

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 110/191 (57%), Positives = 135/191 (70%), Gaps = 6/191 (3%)

Query: 30  SSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKK 89
            S G+++  ALPSLS  +  +  SP CI    KPN     L   +     KA D    KK
Sbjct: 5   GSLGLYAPNALPSLS-LKPRSVKSPFCITSHTKPNDT---LLHNVNKMRAKACDILGAKK 60

Query: 90  SSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRV 149
           + L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWLRV
Sbjct: 61  TILAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLRV 118

Query: 150 RWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYL 209
           RWY+RK FEMY+QFMFVFMFFPGLLLWAPFLNFRK PRDP+MK PWD P DP  +KN YL
Sbjct: 119 RWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVYL 178

Query: 210 KFPWAQVEDYE 220
           K+P+A  EDY+
Sbjct: 179 KYPYATPEDYD 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195606680|gb|ACG25170.1| hypothetical protein [Zea mays]

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 111/190 (58%), Positives = 133/190 (70%), Gaps = 4/190 (2%)

Query: 31  SFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKKLTGTTQKAIDCFDEKKS 90
           S G+ +  AL SLSST    K+ PL I    KP +    L   +     KA D F  KK+
Sbjct: 6   SLGLCAPNAL-SLSSTPRSVKA-PLSITSHTKPISNTDSLLHNIAKMRAKAGDFFGAKKT 63

Query: 91  SLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVR 150
               Q G VL AT++ PALA+TG N HE +L+  ++ + II+ WYFL+MPPIIMNWLRVR
Sbjct: 64  IFAAQLGTVL-ATIDHPALAITGVN-HEQELSSVVLDISIISVWYFLVMPPIIMNWLRVR 121

Query: 151 WYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYLK 210
           WY+RK FEMY+QFM VFMFFPGLLLWAPFLNFRK PRDPSMK PWD P DPS +KN YLK
Sbjct: 122 WYRRKFFEMYLQFMCVFMFFPGLLLWAPFLNFRKFPRDPSMKYPWDKPKDPSTIKNGYLK 181

Query: 211 FPWAQVEDYE 220
           +P+AQ EDY+
Sbjct: 182 YPFAQPEDYD 191

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108305|ref|XP_002314797.1| predicted protein [Populus trichocarpa] gi|222863837|gb|EEF00968.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 136/195 (69%), Gaps = 10/195 (5%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKP--NTKPAKLNKKLTGTTQKAIDCF 85
           MS  F   S KALP+LSS R   + + LC   K+KP  NTK   L KK T   +K  D  
Sbjct: 1   MSYCFSFQSPKALPTLSSQR---RRTSLCTTAKYKPFHNTK---LVKKATSVNRKPEDHD 54

Query: 86  DEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMN 145
             KKSSL IQ  A LLAT+EQPA A+TG NN E DLT  LI++ I+ F YF++MPPII N
Sbjct: 55  QAKKSSLAIQFAA-LLATIEQPAFAITGVNNPE-DLTSILIQLAIVTFCYFILMPPIIFN 112

Query: 146 WLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVK 205
           WL  R Y+RKL E Y+QFM +F+FFPG+LLWAPFLNFRK PRDPS++ PW  P DPSK+K
Sbjct: 113 WLWKRLYRRKLLETYLQFMCIFIFFPGILLWAPFLNFRKFPRDPSLQYPWSKPEDPSKIK 172

Query: 206 NAYLKFPWAQVEDYE 220
           N YL++PWA  EDY+
Sbjct: 173 NDYLRYPWATPEDYD 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464794|ref|XP_004150114.1| PREDICTED: uncharacterized protein LOC101218173 [Cucumis sativus] gi|449519300|ref|XP_004166673.1| PREDICTED: uncharacterized protein LOC101224267 [Cucumis sativus]

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 141/194 (72%), Gaps = 11/194 (5%)

Query: 34  IHSLKALPSLSSTRCVTKS--SPLCIICKHKPNTKPAKLNKK---LTGTTQKA--IDCFD 86
           +H  KALPSLSS++ +  S  SP  +   H  N  P+  N K   + G+ ++   I    
Sbjct: 11  LHIPKALPSLSSSKTLFPSLYSPFKL---HNFNILPSNSNPKNFKIVGSIKEEDPIGYLH 67

Query: 87  EKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNW 146
           +KK+SL +   A  LAT+ +PA AVTGENNHE+ LT  L ++G+I F+YFL+ PPIIMNW
Sbjct: 68  KKKTSLALHL-AAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMNW 126

Query: 147 LRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKN 206
           LR+RWY+R L EMY+QFM VF+FFPG+LLWAPFLNFRK PRDPSMK PW TP DPSK+KN
Sbjct: 127 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIKN 186

Query: 207 AYLKFPWAQVEDYE 220
           AYLK+P+A+ EDY+
Sbjct: 187 AYLKYPFAKPEDYD 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722379|ref|NP_001236474.1| uncharacterized protein LOC100526956 [Glycine max] gi|255631246|gb|ACU15990.1| unknown [Glycine max]

 Score =  189 bits (480), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 103/198 (52%), Positives = 137/198 (69%), Gaps = 10/198 (5%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKP---NTKPAKLNKKLTGTTQKAIDC 84
           MS +F +H  KALP L S+   T S  L    KHK    NT P++ + ++T ++QK+   
Sbjct: 1   MSFTFNLHVPKALPPLPSSSRGTTS--LFFSSKHKSYHNNTSPSQ-SLRITCSSQKSNHD 57

Query: 85  FDE--KKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPI 142
            D   K +SL +Q G VLLA  EQP LAVTGENN   +L   L + G++ F YFL++PPI
Sbjct: 58  DDGSLKYTSLALQIG-VLLALAEQPVLAVTGENNRP-ELLWVLTQWGVVLFGYFLVVPPI 115

Query: 143 IMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPS 202
           IM WL  RWY+R L EMY+QFM VF+FFPG++LWAPFLNFRK PRDPS++ PW  P DPS
Sbjct: 116 IMYWLWKRWYRRNLLEMYLQFMCVFIFFPGVILWAPFLNFRKFPRDPSLQYPWSVPEDPS 175

Query: 203 KVKNAYLKFPWAQVEDYE 220
           K++++Y K+P+A+ EDY+
Sbjct: 176 KIRSSYAKYPYAEPEDYD 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519383|gb|AFK47753.1| unknown [Lotus japonicus]

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/196 (53%), Positives = 131/196 (66%), Gaps = 7/196 (3%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKP---NTKPAKLNKKLTGTTQKAIDC 84
           MS SF +H  KALP + ++   T S  L    K K    NT  ++    +   +QK  D 
Sbjct: 1   MSFSFSLHVPKALPPIPTSPWGTAS--LFTASKQKSSLNNTSHSQSLHIVACCSQKTNDY 58

Query: 85  FDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIM 144
              KK SL +  GA LLA  E PALAVTGEN H  +L   LI++GI+ F+YF+  PPII+
Sbjct: 59  LSIKKPSLALHIGA-LLALAEHPALAVTGEN-HPQELFGVLIQLGIVLFFYFIATPPIII 116

Query: 145 NWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKV 204
           NW+  RWY+R L EMY QFMFVF+FFPG+LLWAPFLNFRK PRDPSMK PW  P DPS++
Sbjct: 117 NWIWRRWYRRNLVEMYFQFMFVFIFFPGVLLWAPFLNFRKFPRDPSMKYPWSIPEDPSRI 176

Query: 205 KNAYLKFPWAQVEDYE 220
           KNAY K+P+A+ EDY+
Sbjct: 177 KNAYYKYPYAEPEDYD 192

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2013925	191	NdhL "NADH dehydrogenase-like	0.827	0.952	0.526	1.4e-46

TAIR|locus:2013925 NdhL "NADH dehydrogenase-like complex L" [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 101/192 (52%), Positives = 123/192 (64%)

Query:    31 SFGIHSLKALPSLS-STRCVTKSSPLCIICKHKPN-TKPAKLNKKLTGTTQKAIDCFDEK 88
             S G+++  ALPSLS   R V   SP CI    KPN T    +NK       KA D    K
Sbjct:     6 SLGLYAPNALPSLSLKPRSV--KSPFCITSHTKPNDTLLHNVNKMRA----KACDILGAK 59

Query:    89 KSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLR 148
             K+ L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWLR
Sbjct:    60 KTILAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLR 117

Query:   149 VRWYKRKLXXXXXXXXXXXXXXPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAY 208
             VRWY+RK               PGLLLWAPFLNFRK PRDP+MK PWD P DP  +KN Y
Sbjct:   118 VRWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNVY 177

Query:   209 LKFPWAQVEDYE 220
             LK+P+A  EDY+
Sbjct:   178 LKYPYATPEDYD 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.433    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      220       192   0.00096  110 3  11 22  0.43    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  182 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.45u 0.14s 16.59t   Elapsed:  00:00:00
  Total cpu time:  16.45u 0.14s 16.59t   Elapsed:  00:00:00
  Start:  Sat May 11 05:10:10 2013   End:  Sat May 11 05:10:10 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0016655 "oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=TAS

GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=ISS;NAS

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.5	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_201968.1	annotation not avaliable (191 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.8__1751__AT5G58260.1	annotation not avaliable (209 aa)				•			•		0.693
	fgenesh2_kg.2__1754__AT1G74880.1	annotation not avaliable (158 aa)				•			•		0.665
	scaffold_900034.1	annotation not avaliable (393 aa)					•		•		0.663
	fgenesh2_kg.1__1751__AT1G15980.1	annotation not avaliable (460 aa)				•			•		0.641
	scaffold_704144.1	annotation not avaliable (157 aa)				•			•		0.612
	fgenesh1_pm.C_scaffold_7000552	annotation not avaliable (141 aa)				•			•		0.559
	fgenesh2_kg.3__76__AT3G01480.1	annotation not avaliable (437 aa)				•			•		0.536
	fgenesh2_kg.4__3042__AT2G47910.1	annotation not avaliable (233 aa)				•			•		0.529
	fgenesh2_kg.5__1948__AT3G55330.1	annotation not avaliable (229 aa)				•			•		0.499
	fgenesh2_kg.1__1528__AT1G14150.1	annotation not avaliable (189 aa)				•			•		0.490

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
pfam10716	77	pfam10716, NdhL, NADH dehydrogenase transmembrane	1e-29

>gnl|CDD|220858 pfam10716, NdhL, NADH dehydrogenase transmembrane subunit

 Score =  104 bits (262), Expect = 1e-29
 Identities = 28/65 (43%), Positives = 40/65 (61%)

Query: 125 LIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRK 184
           L+  G +A  Y L++P I+  W+  RWY    FE  + +  VF+FFPG++L+APFLNFR 
Sbjct: 13  LLAYGALAGLYLLVVPLILYFWMNKRWYVMSKFERLLMYGLVFLFFPGMILFAPFLNFRP 72

Query: 185 LPRDP 189
             R  
Sbjct: 73  SGRGE 77

The NdhL family is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyze the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PF10716	81	NdhL: NADH dehydrogenase transmembrane subunit; In	100.0

>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane

Probab=100.00  E-value=1.5e-40  Score=251.69  Aligned_cols=81  Identities=43%  Similarity=0.874  Sum_probs=77.8

Q ss_pred             hhHHHHHHHhhcCCceeeecccCCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 027693           94 IQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGL  173 (220)
Q Consensus        94 lq~Ga~llA~~e~PAlAvtg~~n~~~D~l~Vll~Y~~La~~YLLVvP~~ly~wln~RWy~~~~~ER~~mY~LVF~FFPGl  173 (220)
                      .||||++ +++             ++|+++|+++|++++|+||+|+|+++|+|||+|||+||++||++||||||+|||||
T Consensus         1 m~~~~l~-~~i-------------~~~~l~vl~~y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~FFPGl   66 (81)
T PF10716_consen    1 MQCGALL-SSI-------------PSDTLLVLLAYAALAGLYLLVVPLILYFWMNKRWYVMSSFERLFMYFLVFLFFPGL   66 (81)
T ss_pred             CcHHHHH-HHc-------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3899999 655             78999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccCcccCCCC
Q 027693          174 LLWAPFLNFRKLPRD  188 (220)
Q Consensus       174 lL~APFLNFR~~pR~  188 (220)
                      +|||||+|||++|||
T Consensus        67 lL~aPFlNfR~~~r~   81 (81)
T PF10716_consen   67 LLLAPFLNFRPKPRQ   81 (81)
T ss_pred             HHHhhhcCCCCCCCC
Confidence            999999999999997

NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00