Citrus Sinensis ID: 027702
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 220 | ||||||
| 255551537 | 631 | structural constituent of ribosome, puta | 0.972 | 0.339 | 0.845 | 1e-103 | |
| 224110494 | 345 | predicted protein [Populus trichocarpa] | 0.972 | 0.620 | 0.845 | 1e-103 | |
| 224100291 | 345 | predicted protein [Populus trichocarpa] | 0.972 | 0.620 | 0.841 | 1e-102 | |
| 449454434 | 342 | PREDICTED: calcium-binding protein 39-li | 0.972 | 0.625 | 0.822 | 1e-101 | |
| 359806928 | 339 | uncharacterized protein LOC100815605 [Gl | 0.972 | 0.631 | 0.822 | 2e-99 | |
| 297807935 | 345 | Mo25 family protein [Arabidopsis lyrata | 0.995 | 0.634 | 0.801 | 1e-98 | |
| 357447597 | 339 | Calcium-binding protein [Medicago trunca | 0.972 | 0.631 | 0.808 | 3e-98 | |
| 18419772 | 345 | Mo25-like protein [Arabidopsis thaliana] | 0.995 | 0.634 | 0.788 | 1e-97 | |
| 145362644 | 343 | Mo25-like protein [Arabidopsis thaliana] | 0.995 | 0.638 | 0.788 | 2e-97 | |
| 110735671 | 345 | hypothetical protein [Arabidopsis thalia | 0.995 | 0.634 | 0.788 | 2e-97 |
| >gi|255551537|ref|XP_002516814.1| structural constituent of ribosome, putative [Ricinus communis] gi|223543902|gb|EEF45428.1| structural constituent of ribosome, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/214 (84%), Positives = 195/214 (91%)
Query: 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
MSFSFFKPSRPKTPLEVVKA K SLMALD KTVVEVKALEKA+EE+EKN V MRC+L GD
Sbjct: 1 MSFSFFKPSRPKTPLEVVKAMKDSLMALDTKTVVEVKALEKALEEVEKNVVAMRCLLCGD 60
Query: 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
GEVEPN DQV QL EVCKEDVL L++HKLP LGWEARKDLVHCWS+LLKQKVDS YC V
Sbjct: 61 GEVEPNTDQVSQLVLEVCKEDVLALMIHKLPNLGWEARKDLVHCWSVLLKQKVDSKYCSV 120
Query: 121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
++IENHFELLDFLVVCYDNKE+AL+CG+MLRECIKF SLA+YILESASFELFFKFVELP
Sbjct: 121 EYIENHFELLDFLVVCYDNKEIALNCGLMLRECIKFSSLAKYILESASFELFFKFVELPN 180
Query: 181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEVY 214
FDVASDAFSTFKDLL KH TVV+EYLTAHYDE +
Sbjct: 181 FDVASDAFSTFKDLLIKHDTVVAEYLTAHYDEFF 214
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224110494|ref|XP_002315537.1| predicted protein [Populus trichocarpa] gi|222864577|gb|EEF01708.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224100291|ref|XP_002311818.1| predicted protein [Populus trichocarpa] gi|222851638|gb|EEE89185.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449454434|ref|XP_004144960.1| PREDICTED: calcium-binding protein 39-like [Cucumis sativus] gi|449471842|ref|XP_004153424.1| PREDICTED: calcium-binding protein 39-like [Cucumis sativus] gi|449523591|ref|XP_004168807.1| PREDICTED: calcium-binding protein 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|359806928|ref|NP_001241580.1| uncharacterized protein LOC100815605 [Glycine max] gi|255645011|gb|ACU23005.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297807935|ref|XP_002871851.1| Mo25 family protein [Arabidopsis lyrata subsp. lyrata] gi|297317688|gb|EFH48110.1| Mo25 family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|357447597|ref|XP_003594074.1| Calcium-binding protein [Medicago truncatula] gi|217073298|gb|ACJ85008.1| unknown [Medicago truncatula] gi|355483122|gb|AES64325.1| Calcium-binding protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|18419772|ref|NP_568368.1| Mo25-like protein [Arabidopsis thaliana] gi|21593944|gb|AAM65898.1| unknown [Arabidopsis thaliana] gi|124301170|gb|ABN04837.1| At5g18940 [Arabidopsis thaliana] gi|332005248|gb|AED92631.1| Mo25-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|145362644|ref|NP_974807.2| Mo25-like protein [Arabidopsis thaliana] gi|332005247|gb|AED92630.1| Mo25-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|110735671|dbj|BAE99816.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 220 | ||||||
| TAIR|locus:2144990 | 345 | AT5G18940 [Arabidopsis thalian | 0.995 | 0.634 | 0.788 | 2.1e-91 | |
| DICTYBASE|DDB_G0284307 | 363 | DDB_G0284307 "Mo25-like family | 0.968 | 0.586 | 0.440 | 1.4e-41 | |
| ZFIN|ZDB-GENE-040426-2897 | 343 | cab39l1 "calcium binding prote | 0.968 | 0.620 | 0.4 | 2e-40 | |
| UNIPROTKB|E2R8W7 | 341 | CAB39 "Uncharacterized protein | 0.963 | 0.621 | 0.409 | 1.3e-38 | |
| UNIPROTKB|Q29RI6 | 341 | CAB39 "Calcium-binding protein | 0.963 | 0.621 | 0.409 | 1.6e-38 | |
| UNIPROTKB|Q9Y376 | 341 | CAB39 "Calcium-binding protein | 0.963 | 0.621 | 0.409 | 1.6e-38 | |
| RGD|1306390 | 341 | Cab39 "calcium binding protein | 0.963 | 0.621 | 0.409 | 1.6e-38 | |
| MGI|MGI:107438 | 341 | Cab39 "calcium binding protein | 0.963 | 0.621 | 0.409 | 2.6e-38 | |
| ZFIN|ZDB-GENE-041114-204 | 334 | cab39l "calcium binding protei | 0.904 | 0.595 | 0.418 | 4.3e-38 | |
| UNIPROTKB|Q9H9S4 | 337 | CAB39L "Calcium-binding protei | 0.904 | 0.590 | 0.399 | 2.7e-36 |
| TAIR|locus:2144990 AT5G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 175/222 (78%), Positives = 194/222 (87%)
Query: 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
MSFSFFKPSRPKTP EVVKA + SLMALD KTVVEVKALEKA+EE+EKNF ++R +LSGD
Sbjct: 1 MSFSFFKPSRPKTPQEVVKAIRDSLMALDTKTVVEVKALEKALEEVEKNFSSLRGILSGD 60
Query: 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
GE EPNADQ +QLA E CKEDV+ L++HKL ILGWE RKDL+HCWSILLKQKV TYCCV
Sbjct: 61 GETEPNADQAVQLALEFCKEDVVSLVIHKLHILGWETRKDLLHCWSILLKQKVGDTYCCV 120
Query: 121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
Q+ E HFELLD LVVCYDNKE+ALHCG MLRECIKFPSLA+YILESA FELFFKFVELP
Sbjct: 121 QYFEEHFELLDSLVVCYDNKEIALHCGSMLRECIKFPSLAKYILESACFELFFKFVELPN 180
Query: 181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDE---VYTHLIS 219
FDVASDAFSTFKDLLTKH +VVSE+LT+HY E VY L++
Sbjct: 181 FDVASDAFSTFKDLLTKHDSVVSEFLTSHYTEFFDVYERLLT 222
|
|
| DICTYBASE|DDB_G0284307 DDB_G0284307 "Mo25-like family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-040426-2897 cab39l1 "calcium binding protein 39, like 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2R8W7 CAB39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q29RI6 CAB39 "Calcium-binding protein 39" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y376 CAB39 "Calcium-binding protein 39" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| RGD|1306390 Cab39 "calcium binding protein 39" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:107438 Cab39 "calcium binding protein 39" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041114-204 cab39l "calcium binding protein 39-like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9H9S4 CAB39L "Calcium-binding protein 39-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| scaffold_601970.1 | annotation not avaliable (345 aa) | |||||||
(Arabidopsis lyrata) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 220 | |||
| pfam08569 | 334 | pfam08569, Mo25, Mo25-like | 3e-79 |
| >gnl|CDD|219909 pfam08569, Mo25, Mo25-like | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 3e-79
Identities = 93/218 (42%), Positives = 136/218 (62%), Gaps = 6/218 (2%)
Query: 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
M F F K PKTP ++V++ K L+ LD + EKA EE+ KN ++ +L GD
Sbjct: 1 MPFLFKK--SPKTPSDLVRSLKDQLLKLD---SLSSDNAEKAQEEVSKNLSQLKEILVGD 55
Query: 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-CC 119
+ EP +Q+ QLA E+ ED+L LL+ L L +E RKD+ +S +L++ +D+
Sbjct: 56 TDAEPTQEQIAQLAQEMYSEDLLYLLIDNLHKLDFETRKDVALIFSNILRRSIDNNSRPT 115
Query: 120 VQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELP 179
V ++ H E+L L+ Y+ E+AL CG MLRECIK +LA+ IL S F FFK+V+L
Sbjct: 116 VDYLVAHPEILSLLLKGYETSEIALTCGDMLRECIKHEALAKIILYSPQFWKFFKYVQLS 175
Query: 180 TFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEVYTHL 217
TF++A+DAFSTFKDLLT H +V+E+L +YD ++
Sbjct: 176 TFEIATDAFSTFKDLLTTHKKLVAEFLLNNYDRFFSMF 213
|
Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site cell division in a cell cycle dependent manner. Length = 334 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 220 | |||
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 100.0 | |
| KOG1566 | 342 | consensus Conserved protein Mo25 [Function unknown | 100.0 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 94.22 | |
| PTZ00446 | 191 | vacuolar sorting protein SNF7-like; Provisional | 88.09 | |
| KOG1566 | 342 | consensus Conserved protein Mo25 [Function unknown | 84.45 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 84.06 |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-76 Score=537.68 Aligned_cols=214 Identities=49% Similarity=0.776 Sum_probs=186.7
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCChHHHHHHHHHHHhh
Q 027702 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE 80 (220)
Q Consensus 1 M~flf~~k~~~ktP~elVr~~~e~l~~L~~~~~~~~~~~~k~~eeisK~L~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~ 80 (220)
|+|||| ++||||+|+||+++|+|.+|+. . .+++++|++|||+|+|++||.||+|++|.+|++|+|+||++|+|++
T Consensus 1 M~FlF~--k~~KtP~ElVr~l~e~L~~L~~--~-~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~ 75 (335)
T PF08569_consen 1 MSFLFK--KKPKTPAELVRSLREALEKLDS--K-SDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRS 75 (335)
T ss_dssp -------------HHHHHHHHHHHHHHHHS--S--HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHH
T ss_pred CCCCcC--CCCCCHHHHHHHHHHHHHHhcc--c-cCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 999995 4999999999999999999971 1 3456799999999999999999999999999999999999999999
Q ss_pred cHHHHHHhcCCCCCchhhhcHHHHHHHhhhcccCCcc-chhHHhhcc-HHHHHHHHHhccCcchhhhhhHHHHHHhhhHH
Q 027702 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-CCVQFIENH-FELLDFLVVCYDNKEVALHCGIMLRECIKFPS 158 (220)
Q Consensus 81 dll~~Li~~L~~L~FE~RKdv~~If~~llR~~~~~~~-p~v~Yl~~~-peil~~L~~gY~~~diAl~~G~mLREcik~e~ 158 (220)
|+|..||.+|++||||+|||+++||++++|+++++++ |+|+||++| ||||++|+.||++||+|++||.|||||+|||+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999998 999999999 99999999999999999999999999999999
Q ss_pred HHHHHcCchhHHHHhhhhcCCChhhhhhhHHHHHHHHhcChhHHHHHHHhcHHHHHHhhhc
Q 027702 159 LARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEVYTHLIS 219 (220)
Q Consensus 159 la~~iL~~~~f~~fF~yv~~~~FeiasDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~y~~ 219 (220)
+|++||+++.||+||+|++.++||||||||+||+|+||+||++||+||..|||+||.+|+.
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~ 216 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNK 216 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998863
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG1566 consensus Conserved protein Mo25 [Function unknown] | Back alignment and domain information |
|---|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
| >PTZ00446 vacuolar sorting protein SNF7-like; Provisional | Back alignment and domain information |
|---|
| >KOG1566 consensus Conserved protein Mo25 [Function unknown] | Back alignment and domain information |
|---|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 220 | ||||
| 3gni_A | 341 | Structure Of Strad And Mo25 Length = 341 | 1e-41 | ||
| 3zhp_A | 340 | Human Mst3 (stk24) In Complex With Mo25beta Length | 5e-39 | ||
| 1upk_A | 341 | Crystal Structure Of Mo25 In Complex With A C-Termi | 7e-39 |
| >pdb|3GNI|A Chain A, Structure Of Strad And Mo25 Length = 341 | Back alignment and structure |
|
| >pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta Length = 340 | Back alignment and structure |
| >pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal Peptide Of Strad Length = 341 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 220 | |||
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 1e-78 |
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Length = 341 | Back alignment and structure |
|---|
Score = 238 bits (608), Expect = 1e-78
Identities = 88/217 (40%), Positives = 136/217 (62%), Gaps = 3/217 (1%)
Query: 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
M F F K K+P ++VK K S+ L+ + + + KA EKA EE+ KN V M+ +L G
Sbjct: 1 MPFPFGK--SHKSPADIVKNLKESMAVLEKQDISDKKA-EKATEEVSKNLVAMKEILYGT 57
Query: 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
E EP + V QLA E+ +L LV L ++ +E +KD+ ++ +L++++ + V
Sbjct: 58 NEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTV 117
Query: 121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
++I +L L+ Y++ E+AL+CGIMLRECI+ LA+ IL S F FF++VE+ T
Sbjct: 118 EYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMST 177
Query: 181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEVYTHL 217
FD+ASDAF+TFKDLLT+H + +E+L HYD ++
Sbjct: 178 FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY 214
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 220 | |||
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 100.0 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 95.24 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 85.72 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 84.87 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 83.58 | |
| 3qml_C | 315 | Protein SLS1, nucleotide exchange factor SIL1; arm | 82.88 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 80.27 |
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-80 Score=563.14 Aligned_cols=216 Identities=40% Similarity=0.680 Sum_probs=191.6
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCChHHHHHHHHHHHhh
Q 027702 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE 80 (220)
Q Consensus 1 M~flf~~k~~~ktP~elVr~~~e~l~~L~~~~~~~~~~~~k~~eeisK~L~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~ 80 (220)
|++-| +++||||+|+||+++|+|.+|+.++. .+++.+|++|||+|+|++||.||||++|+||+||+|+||++|+|++
T Consensus 1 ~~m~F--~~~~ktP~elVr~l~d~l~~l~~~~~-~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~ 77 (341)
T 1upk_A 1 MPFPF--GKSHKSPADIVKNLKESMAVLEKQDI-SDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNS 77 (341)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHH
T ss_pred CCCCC--CCCCCCHHHHHHHHHHHHHHHhcccc-ccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 33337 45899999999999999999986431 2234478999999999999999999999999999999999999999
Q ss_pred cHHHHHHhcCCCCCchhhhcHHHHHHHhhhcccCCccchhHHhhccHHHHHHHHHhccCcchhhhhhHHHHHHhhhHHHH
Q 027702 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLA 160 (220)
Q Consensus 81 dll~~Li~~L~~L~FE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~L~~gY~~~diAl~~G~mLREcik~e~la 160 (220)
|+|++||.+||+||||+|||+++||++++|+++|+++|+|+||++|||||++|++||+++|+|++||+|||||||||++|
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la 157 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLA 157 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCchhHHHHhhhhcCCChhhhhhhHHHHHHHHhcChhHHHHHHHhcHHHHHHhhhc
Q 027702 161 RYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEVYTHLIS 219 (220)
Q Consensus 161 ~~iL~~~~f~~fF~yv~~~~FeiasDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~y~~ 219 (220)
++||+|+.||+||+||+.|+||||||||+|||||||+||++||+||++|||+||++|+.
T Consensus 158 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~ 216 (341)
T 1upk_A 158 KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEK 216 (341)
T ss_dssp HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999974
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
| >3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 220 | ||||
| d1upka_ | 330 | a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) | 1e-86 |
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 330 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 256 bits (657), Expect = 1e-86
Identities = 84/206 (40%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 12 KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVL 71
K+P ++VK K S+ L+ + + + KA EKA EE+ KN V M+ +L G E EP + V
Sbjct: 1 KSPADIVKNLKESMAVLEKQDISDKKA-EKATEEVSKNLVAMKEILYGTNEKEPQTEAVA 59
Query: 72 QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131
QLA E+ +L LV L ++ +E +KD+ ++ +L++++ + V++I +L
Sbjct: 60 QLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF 119
Query: 132 FLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTF 191
L+ Y++ E+AL+CGIMLRECI+ LA+ IL S F FF++VE+ TFD+ASDAF+TF
Sbjct: 120 MLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATF 179
Query: 192 KDLLTKHLTVVSEYLTAHYDEVYTHL 217
KDLLT+H + +E+L HYD ++
Sbjct: 180 KDLLTRHKLLSAEFLEQHYDRFFSEY 205
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 220 | |||
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 94.71 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 87.44 |
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.5e-81 Score=561.09 Aligned_cols=207 Identities=40% Similarity=0.683 Sum_probs=193.4
Q ss_pred CChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCChHHHHHHHHHHHhhcHHHHHHhcCC
Q 027702 12 KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLP 91 (220)
Q Consensus 12 ktP~elVr~~~e~l~~L~~~~~~~~~~~~k~~eeisK~L~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~dll~~Li~~L~ 91 (220)
|||+|+||+++|+|.+|+.++. .+++++|++|||+|+|++||.||||++|+||+||+|+||++|+|++|+|++||.|||
T Consensus 1 ktP~elVr~~~d~l~~l~~~~~-~~~k~ek~~ee~~K~l~~mK~iL~G~~e~ep~~e~~~qL~~e~~~~d~l~~Li~~L~ 79 (330)
T d1upka_ 1 KSPADIVKNLKESMAVLEKQDI-SDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQ 79 (330)
T ss_dssp CCHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHSHHHHHHHTGG
T ss_pred CCHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhChHHHHHHhCC
Confidence 7999999999999999997654 456789999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhcHHHHHHHhhhcccCCccchhHHhhccHHHHHHHHHhccCcchhhhhhHHHHHHhhhHHHHHHHcCchhHHH
Q 027702 92 ILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFEL 171 (220)
Q Consensus 92 ~L~FE~RKdv~~If~~llR~~~~~~~p~v~Yl~~~peil~~L~~gY~~~diAl~~G~mLREcik~e~la~~iL~~~~f~~ 171 (220)
+||||+|||+++||++++||++|+|+|+|+||++|||||++|++||+++|+|++||+|||||||||++|++||+|+.||+
T Consensus 80 ~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~lak~iL~s~~f~~ 159 (330)
T d1upka_ 80 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYD 159 (330)
T ss_dssp GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGH
T ss_pred CCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHHHHHHHccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCChhhhhhhHHHHHHHHhcChhHHHHHHHhcHHHHHHhhhc
Q 027702 172 FFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEVYTHLIS 219 (220)
Q Consensus 172 fF~yv~~~~FeiasDAf~tfkelLtrHk~lvaefL~~Nyd~Ff~~y~~ 219 (220)
||+||++|+||||||||+||||+||+||.+|||||+.|||+||.+|+.
T Consensus 160 fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~ 207 (330)
T d1upka_ 160 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEK 207 (330)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999963
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|