Citrus Sinensis ID: 027708

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccccccccccEEEEEcccccccccccccEEEEccccccHHHcccHHHHHHHHHHHHccccEEEEccHHHHHHHHcccccEEEEcccccHHHHHHcccEEEcccccccEEEcccEEEccccccHHHHHHHHHHHHcccccccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcEEEEEEcccHHHHHHHHHHHHHHHHccEEEEEccccccccEEEEEEEEcccccccEccccccEEEccEEHHHccHHHccEEEEccEcHHHHHcccHHHHHHHHHHHHccccEEEEccccHHHHHHccccccEEcccHHHHHHHHHcccEEcccccEccEEEcccEEccccccccHHHHHHHHHHHcccEcccccEEEEEccHHHHHHHHcc
Coil and Loop (DISEMBL)
manskggkrSVLLLCGDYMEDYEAMVPFQALLAFGvsvdaacpgkksgdvcptavhqstghqqtysetrghnfalnatfdeidptkydglvipggrapeylamnDSVIDLVRKFSNSGKTIASICHGQLILAAADVvkgrkctayppvkpVLIAagaswiepetMAACVvdgniitgatyegHPEFIRLFLKAlggtitgsdkRILFLCGVSFCFQNLLE
Flexible Loop (DISEMBL)
manskggkrsVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQstghqqtysetRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Low Complexity Region (SEG)
MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Disordered region (IsUnstruct)
*********SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAV************TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNL**
Disordered Region (DISOPRED)
******G****LLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Disordered Region (DISEMBL)
********RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTA***********SETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Disordered Region (DISPRO)
*ANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLCGVSFCFQNLLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q9M8R4	388	Protein DJ-1 homolog D OS	yes	no	0.931	0.528	0.738	2e-87
O59413	166	Intracellular protease 1	yes	no	0.745	0.987	0.340	2e-25
Q9V1F8	166	Intracellular protease 1	yes	no	0.722	0.957	0.353	3e-24
Q51732	166	Intracellular protease 1	yes	no	0.727	0.963	0.335	3e-24
Q5JGM7	166	Intracellular protease 1	yes	no	0.718	0.951	0.347	2e-22
O28987	168	Uncharacterized protein A	yes	no	0.745	0.976	0.313	1e-18
P45470	172	Protein YhbO OS=Escherich	N/A	no	0.522	0.668	0.388	9e-18
O06006	169	Putative cysteine proteas	yes	no	0.754	0.982	0.279	7e-14
Q58377	205	Uncharacterized protein M	yes	no	0.595	0.639	0.34	8e-14
P80876	172	General stress protein 18	no	no	0.636	0.813	0.274	1e-11

>sp|Q9M8R4|DJ1D_ARATH Protein DJ-1 homolog D OS=Arabidopsis thaliana GN=DJ1D PE=1 SV=1

 Score =  321 bits (823), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 155/210 (73%), Positives = 176/210 (83%), Gaps = 5/210 (2%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
           MANS    R+VL+LCGDYMEDYE MVPFQAL AFG++V   CPGKK+GD CPTAVH   G
Sbjct: 1   MANS----RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCG 56

Query: 61  HQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKT 120
           HQ TY E+RGHNF LNATFDE+D +KYDGLVIPGGRAPEYLA+  SV++LV++FS SGK 
Sbjct: 57  HQ-TYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKP 115

Query: 121 IASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY 180
           IASICHGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATY
Sbjct: 116 IASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATY 175

Query: 181 EGHPEFIRLFLKALGGTITGSDKRILFLCG 210
           EGHPEFI+LF+KALGG ITG++KRILFLCG
Sbjct: 176 EGHPEFIQLFVKALGGKITGANKRILFLCG 205

May be involved in oxidative stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|O59413|PFPI_PYRHO Intracellular protease 1 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pfpI PE=1 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 102/185 (55%), Gaps = 21/185 (11%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
            VL L  +  ED E + P+  L             K+ G      V+ ++  + T +   
Sbjct: 2   KVLFLTANEFEDVELIYPYHRL-------------KEEGH----EVYIASFERGTITGKH 44

Query: 70  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
           G++  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  
Sbjct: 45  GYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQ 104

Query: 130 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 189
           IL +A V++GRK T+YP +K  +I AG  W++ E     VVDGN ++         ++R 
Sbjct: 105 ILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAE----VVVDGNWVSSRVPADLYAWMRE 160

Query: 190 FLKAL 194
           F+K L
Sbjct: 161 FVKLL 165

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q9V1F8|PFPI_PYRAB Intracellular protease 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=pfpI PE=3 SV=1

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 100/184 (54%), Gaps = 25/184 (13%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG 70
           VL+L  D  ED E + P+  L   G  V  A    K G +        TG         G
Sbjct: 3   VLILSADQFEDVELIYPYHRLKEEGHEVLVAS--FKRGVI--------TGKH-------G 45

Query: 71  HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 130
           +   ++  F+E++P ++D LV+PGGRAPE + +N+  +++ +K  + GK +ASICHG  I
Sbjct: 46  YTVNVDLAFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSEGKPVASICHGPQI 105

Query: 131 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPEF 186
           L +A V++GR+ T+YP +K  +I AG  W++ E     VVDGN ++    G  Y    EF
Sbjct: 106 LISAGVLRGRRGTSYPGIKDDMINAGVDWVDAE----VVVDGNWVSSRVPGDLYAWMREF 161

Query: 187 IRLF 190
           ++L 
Sbjct: 162 VKLL 165

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q51732|PFPI_PYRFU Intracellular protease 1 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pfpI PE=1 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 25/185 (13%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
            +L L  +  ED E + P+  L             K+ G      V+ ++  +   +   
Sbjct: 2   KILFLSANEFEDVELIYPYHRL-------------KEEGH----EVYIASFEKGVITGKH 44

Query: 70  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
           G++  ++ TFDE++P ++D LV+PGGRAPE + +N+  +++ RK    GK +A+ICHG  
Sbjct: 45  GYSVKVDLTFDEVNPDEFDALVLPGGRAPERVRLNEKAVEIARKMFTEGKPVATICHGPQ 104

Query: 130 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGHPE 185
           IL +A V+KGRK T+Y  ++  +I AG  WI+ E     VVDGN ++    G  Y    E
Sbjct: 105 ILISAGVLKGRKGTSYIGIRDDMINAGVEWIDRE----VVVDGNWVSSRHPGDLYAWMRE 160

Query: 186 FIRLF 190
           F++L 
Sbjct: 161 FVKLL 165

Highly stable protease. Although the physiological function is unclear it is the dominant protease in P.furiosus.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q5JGM7|PFPI_PYRKO Intracellular protease 1 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=pfpI PE=3 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 94/187 (50%), Gaps = 29/187 (15%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC--PGKKSGDVCPTAVHQSTGHQQTYSE 67
            VL+L  D  ED E + P   +   G  V  A    GK +G                   
Sbjct: 2   KVLILSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITG------------------- 42

Query: 68  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127
             G+   ++  FDE+DP ++D LV+PGGRAPE + +N+  + + +K    GK +ASICHG
Sbjct: 43  KHGYTVNVDLAFDEVDPDEFDALVLPGGRAPEIVRLNEKAVAITKKMFEDGKPVASICHG 102

Query: 128 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGH 183
             IL +A V+KGRK T+   ++  +  AGA WI+ E     VVDGN ++    G  Y   
Sbjct: 103 PQILISAGVLKGRKGTSTVTIRDDVKNAGAEWIDAE----VVVDGNWVSSRHPGDLYAWM 158

Query: 184 PEFIRLF 190
            EF++L 
Sbjct: 159 REFVKLL 165

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|O28987|Y1281_ARCFU Uncharacterized protein AF_1281 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_1281 PE=3 SV=1

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 21/185 (11%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
            VL+L  +  ED E   P   L   G+ V  A           +++    G        +
Sbjct: 2   RVLILAENEFEDLELFYPLYRLREEGLEVKVAS----------SSLEVRVGK-------K 44

Query: 70  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
           G+    + T++++    Y GLVIPGG++PE + +N+  +++V+ F   GK +A+ICHG  
Sbjct: 45  GYQVRPDLTYEDVKVEDYAGLVIPGGKSPERVRINERAVEIVKDFLELGKPVAAICHGPQ 104

Query: 130 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 189
           +L +A  VKGR+ T++  ++  LIAAGA + +       VVDGN+IT    +  P F   
Sbjct: 105 LLISAMAVKGRRMTSWIGIRDDLIAAGALYED----RPVVVDGNVITSRMPDDLPYFCGE 160

Query: 190 FLKAL 194
            +K L
Sbjct: 161 LIKIL 165

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

>sp|P45470|YHBO_ECOLI Protein YhbO OS=Escherichia coli (strain K12) GN=yhbO PE=1 SV=2

 Score = 90.1 bits (222), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 11/126 (8%)

Query: 75  LNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134
           ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  +L +A
Sbjct: 54  IDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 113

Query: 135 DVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGN-IITGATYEGHPEFIRLF 190
           DV++GRK TA   VKP++I    AGA + + E     VVD + ++T  T +  P F R  
Sbjct: 114 DVIRGRKLTA---VKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLPAFNREA 166

Query: 191 LKALGG 196
           L+ LG 
Sbjct: 167 LRLLGA 172

Escherichia coli (strain K12) (taxid: 83333)

>sp|O06006|YRAA_BACSU Putative cysteine protease YraA OS=Bacillus subtilis (strain 168) GN=yraA PE=2 SV=2

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 20/186 (10%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           + + +L  D  ED E   P +A    G SV               A+    G + T    
Sbjct: 3   KKIAVLVTDQFEDIEYTSPVKAYEEAGYSV--------------VAIDLEAGKEVTGK-- 46

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
            G    ++    ++D + +D L+IPGG +P+ L  +D   +  + F  + K + +ICHG 
Sbjct: 47  HGEKVKIDKAISDVDASDFDALLIPGGFSPDLLRADDRPGEFAKAFVENKKPVFAICHGP 106

Query: 129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
            +L   D++KG+  T Y  ++  LI AGA++ + E     VV  NI+T  T +    F R
Sbjct: 107 QVLIDTDLLKGKDITGYRSIRKDLINAGANYKDAE----VVVSHNIVTSRTPDDLEAFNR 162

Query: 189 LFLKAL 194
             L  L
Sbjct: 163 ESLNLL 168

Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

>sp|Q58377|Y967_METJA Uncharacterized protein MJ0967 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0967 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 19/150 (12%)

Query: 52  PTAVHQSTGHQ-QTYSETRG-------HNFALNATFDEIDPTKYDGLVIPGGR-APEYLA 102
           P AV +S G +    S T+G       +   +  T  +++P  Y  +VI GG  + EYL 
Sbjct: 51  PMAVFESNGLKVDVVSTTKGECVGMLGNKITVEKTIYDVNPDDYVAIVIVGGIGSKEYLW 110

Query: 103 MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPV--LIAAGASWI 160
            N  +I+LV++F N  K +++IC   ++LA A ++KG+K T YP  + +  L  AGA + 
Sbjct: 111 NNTKLIELVKEFYNKNKVVSAICLSPVVLARAGILKGKKATVYPAPEAIEELKKAGAIYE 170

Query: 161 EPETMAACVVDGNIITGATYEGHPEFIRLF 190
           +       VVDGN+IT  +    P++ RLF
Sbjct: 171 D----RGVVVDGNVITAKS----PDYARLF 192

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|P80876|GS18_BACSU General stress protein 18 OS=Bacillus subtilis (strain 168) GN=yfkM PE=1 SV=3

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 13/153 (8%)

Query: 52  PTAVHQSTGHQQTYSE------TRGHN----FALNATFDEIDPTKYDGLVIPGGRAPEYL 101
           P    +  GH+ T  E       +G        ++A+ D+++ + +D L+IPGG +P+ L
Sbjct: 21  PAKAFKEAGHELTVIEKEKGKTVKGKQGTAEVTVDASIDDVNSSDFDALLIPGGFSPDQL 80

Query: 102 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE 161
             +D  +   + F    K + +ICHG  +L  A  + GRK T Y  ++  +  AGA  ++
Sbjct: 81  RADDRFVQFTKAFMTDKKPVFAICHGPQLLINAKALDGRKATGYTSIRVDMENAGADVVD 140

Query: 162 PETMAACVVDGNIITGATYEGHPEFIRLFLKAL 194
            E +   V    ++T  T +  P F R  L  L
Sbjct: 141 KEVV---VCQDQLVTSRTPDDIPAFNRESLALL 170

Functions in the protection against aldehyde-stress, possibly by degrading damaged proteins.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 2

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
255570457	388	protease C56, putative [Ricinus communis	0.954	0.541	0.770	4e-96
224134735	386	predicted protein [Populus trichocarpa]	0.95	0.541	0.769	1e-93
118483416	386	unknown [Populus trichocarpa]	0.95	0.541	0.769	1e-93
359476496	529	PREDICTED: uncharacterized protein LOC10	0.913	0.379	0.806	1e-92
297738171	386	unnamed protein product [Vitis vinifera]	0.913	0.520	0.806	2e-92
449469102	390	PREDICTED: uncharacterized protein LOC10	0.940	0.530	0.780	2e-92
255570459	386	protease C56, putative [Ricinus communis	0.95	0.541	0.741	2e-88
357166678	388	PREDICTED: uncharacterized protein LOC10	0.913	0.518	0.757	3e-88
115461240	387	Os04g0671700 [Oryza sativa Japonica Grou	0.913	0.519	0.747	1e-86
226498180	387	YLS5 [Zea mays] gi|194688460|gb|ACF78314	0.913	0.519	0.747	3e-86

>gi|255570457|ref|XP_002526187.1| protease C56, putative [Ricinus communis] gi|223534491|gb|EEF36191.1| protease C56, putative [Ricinus communis]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 168/218 (77%), Positives = 197/218 (90%), Gaps = 8/218 (3%)

Query: 8   KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSE 67
           +++V LLCGDYMEDYEAMVPFQALLA+GV+VDAACPGKK+GD C TA+H+S+GHQ TYSE
Sbjct: 4   QKTVFLLCGDYMEDYEAMVPFQALLAYGVAVDAACPGKKAGDYCRTAIHESSGHQ-TYSE 62

Query: 68  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127
           +RGHNF LN+TFD+ID  KYDGLVIPGGRAPEYLAMN+SV+D VRKF+++GK IAS+CHG
Sbjct: 63  SRGHNFTLNSTFDDIDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFADAGKPIASVCHG 122

Query: 128 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 187
           QLILAAA +VKGRKCTAYPPV+PVLIAAGA W+EPETMA+CV DGN+ITGATYEGHPEFI
Sbjct: 123 QLILAAAGLVKGRKCTAYPPVRPVLIAAGAHWVEPETMASCVADGNLITGATYEGHPEFI 182

Query: 188 RLFLKALGGTITGSDKRILFLCG-------VSFCFQNL 218
           +LF+KALGG+ITG+DKRILFLCG       V+  FQ+L
Sbjct: 183 QLFVKALGGSITGADKRILFLCGDYMEDYEVTVPFQSL 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134735|ref|XP_002327476.1| predicted protein [Populus trichocarpa] gi|222836030|gb|EEE74451.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/217 (76%), Positives = 191/217 (88%), Gaps = 8/217 (3%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           +SVLLLCGDYMED+EAMVPFQAL AFG++VDAACPGKK+GD+C TA+H S G+Q TY+E+
Sbjct: 3   KSVLLLCGDYMEDHEAMVPFQALQAFGIAVDAACPGKKAGDICRTAIHDSAGYQ-TYTES 61

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
           RGHNF LNATFDE+D  KYDGLVIPGGRAPEYLAMN+SV+D VRKFS+SG+ IAS+CHGQ
Sbjct: 62  RGHNFTLNATFDEVDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFSDSGRPIASVCHGQ 121

Query: 129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
           LILAAA+ VKGRKCTAYP VKPVLI AGA W+EPETM ACV DGNIITGATYEGHPEFI+
Sbjct: 122 LILAAANSVKGRKCTAYPAVKPVLIDAGAHWVEPETMKACVADGNIITGATYEGHPEFIQ 181

Query: 189 LFLKALGGTITGSDKRILFLCG-------VSFCFQNL 218
           LF++ALGG ITGSDK+ILFLCG       V+  FQ+L
Sbjct: 182 LFVRALGGKITGSDKKILFLCGDFMEDYEVTVPFQSL 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483416|gb|ABK93608.1| unknown [Populus trichocarpa]

 Score =  348 bits (892), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/217 (76%), Positives = 191/217 (88%), Gaps = 8/217 (3%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           +SVLLLCGDYMED+EAMVPFQAL AFG++VDAACPGKK+GD+C TA+H S G+Q TY+E+
Sbjct: 3   KSVLLLCGDYMEDHEAMVPFQALQAFGIAVDAACPGKKAGDICRTAIHDSAGYQ-TYTES 61

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
           RGHNF LNATFDE+D  KYDGLVIPGGRAPEYLAMN+SV+D VRKFS+SG+ IAS+CHGQ
Sbjct: 62  RGHNFTLNATFDEVDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFSDSGRPIASVCHGQ 121

Query: 129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
           LILAAA+ VKGRKCTAYP VKPVLI AGA W+EPETM ACV DGNIITGATYEGHPEFI+
Sbjct: 122 LILAAANSVKGRKCTAYPAVKPVLIDAGAHWVEPETMKACVADGNIITGATYEGHPEFIQ 181

Query: 189 LFLKALGGTITGSDKRILFLCG-------VSFCFQNL 218
           LF++ALGG ITGSDK+ILFLCG       V+  FQ+L
Sbjct: 182 LFVRALGGKITGSDKKILFLCGDFMEDYEVTVPFQSL 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476496|ref|XP_002272841.2| PREDICTED: uncharacterized protein LOC100247956 [Vitis vinifera]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 163/202 (80%), Positives = 182/202 (90%), Gaps = 1/202 (0%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           +SVL+LCGDYMEDYE MVPFQALLA+GVSV A CPGKK+GDVC TAVHQ  GHQ TYSE+
Sbjct: 146 KSVLILCGDYMEDYEVMVPFQALLAYGVSVHAVCPGKKAGDVCRTAVHQGLGHQ-TYSES 204

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
           RGHNF +NATFDE+D +KYDGLVIPGGRAPEYLAMN+SV+DLVRKF +SGK IASICHGQ
Sbjct: 205 RGHNFTVNATFDEVDASKYDGLVIPGGRAPEYLAMNESVLDLVRKFFSSGKPIASICHGQ 264

Query: 129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
           LILAA+  V+GRKCTAYP V P LIAAGA W+EPETM+ACV+DGN+IT ATY GHP FI+
Sbjct: 265 LILAASGSVRGRKCTAYPAVGPALIAAGAHWVEPETMSACVIDGNLITAATYIGHPGFIQ 324

Query: 189 LFLKALGGTITGSDKRILFLCG 210
           LF+KALGGTITGSDKRILFLCG
Sbjct: 325 LFVKALGGTITGSDKRILFLCG 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738171|emb|CBI27372.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 163/202 (80%), Positives = 182/202 (90%), Gaps = 1/202 (0%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           +SVL+LCGDYMEDYE MVPFQALLA+GVSV A CPGKK+GDVC TAVHQ  GHQ TYSE+
Sbjct: 3   KSVLILCGDYMEDYEVMVPFQALLAYGVSVHAVCPGKKAGDVCRTAVHQGLGHQ-TYSES 61

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
           RGHNF +NATFDE+D +KYDGLVIPGGRAPEYLAMN+SV+DLVRKF +SGK IASICHGQ
Sbjct: 62  RGHNFTVNATFDEVDASKYDGLVIPGGRAPEYLAMNESVLDLVRKFFSSGKPIASICHGQ 121

Query: 129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
           LILAA+  V+GRKCTAYP V P LIAAGA W+EPETM+ACV+DGN+IT ATY GHP FI+
Sbjct: 122 LILAASGSVRGRKCTAYPAVGPALIAAGAHWVEPETMSACVIDGNLITAATYIGHPGFIQ 181

Query: 189 LFLKALGGTITGSDKRILFLCG 210
           LF+KALGGTITGSDKRILFLCG
Sbjct: 182 LFVKALGGTITGSDKRILFLCG 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469102|ref|XP_004152260.1| PREDICTED: uncharacterized protein LOC101208672 [Cucumis sativus] gi|449484302|ref|XP_004156844.1| PREDICTED: uncharacterized LOC101208672 [Cucumis sativus]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 164/210 (78%), Positives = 187/210 (89%), Gaps = 3/210 (1%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
           MA SK   +SVLLLCGD+MEDYEAMVPFQAL+A+GVSVDA CPGKK+GD+C TA+H+  G
Sbjct: 1   MAQSK--SKSVLLLCGDFMEDYEAMVPFQALMAYGVSVDAVCPGKKAGDICRTAIHELLG 58

Query: 61  HQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKT 120
           HQ TYSE+RGHNFALNATFDEID  KYDGLVIPGGRAPEYLA+N SV  LVRKFS SGK 
Sbjct: 59  HQ-TYSESRGHNFALNATFDEIDFDKYDGLVIPGGRAPEYLAINSSVQSLVRKFSESGKP 117

Query: 121 IASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY 180
           IAS+CHGQLILAAA +V+GRKCTAY PV PVL AAGASWIEPE++AACV+DGN+IT ATY
Sbjct: 118 IASVCHGQLILAAAGLVRGRKCTAYSPVGPVLAAAGASWIEPESLAACVIDGNLITAATY 177

Query: 181 EGHPEFIRLFLKALGGTITGSDKRILFLCG 210
           E HP++I+LF+KALGG ++GSDKRILFLCG
Sbjct: 178 ESHPQYIQLFVKALGGNVSGSDKRILFLCG 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570459|ref|XP_002526188.1| protease C56, putative [Ricinus communis] gi|223534492|gb|EEF36192.1| protease C56, putative [Ricinus communis]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 161/217 (74%), Positives = 185/217 (85%), Gaps = 8/217 (3%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           +SVLLLCGDYMED+EAMVPFQALLAFGV VDA CPGKK+G+ C TA+H+ + HQ T+ E+
Sbjct: 3   KSVLLLCGDYMEDHEAMVPFQALLAFGVKVDAVCPGKKAGEFCRTAIHELSTHQ-TFDES 61

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
           RGHNF LNATFDEID  KYDGLVIPGGRAPEYLAMN+SV+D VRKFS++GK IASICHGQ
Sbjct: 62  RGHNFTLNATFDEIDFGKYDGLVIPGGRAPEYLAMNESVLDCVRKFSDAGKPIASICHGQ 121

Query: 129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
           LILAAA +VKGR+CTA P  +PVLIAAGA W+EP+  AACV DGN+ITGATY GHPEFI+
Sbjct: 122 LILAAAGLVKGRRCTAAPHGRPVLIAAGADWVEPQNFAACVADGNLITGATYFGHPEFIQ 181

Query: 189 LFLKALGGTITGSDKRILFLCG-------VSFCFQNL 218
           LF+KALGG +TGSDKRILFLCG       V+  FQ+L
Sbjct: 182 LFVKALGGIVTGSDKRILFLCGDYMEDYEVTVPFQSL 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357166678|ref|XP_003580796.1| PREDICTED: uncharacterized protein LOC100841497 [Brachypodium distachyon]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 153/202 (75%), Positives = 180/202 (89%), Gaps = 1/202 (0%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           + VLLLCGDYMEDYEAMVPFQAL A+GV+VDAACPGKK+GD C TAVHQ  GHQ TY+E+
Sbjct: 4   KRVLLLCGDYMEDYEAMVPFQALQAYGVAVDAACPGKKAGDSCRTAVHQPIGHQ-TYAES 62

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
           RGHNF+LNA+FDEI+  +YDGLVIPGGRAPEYLAM++ V+DLVRKFS++ K IAS+CHGQ
Sbjct: 63  RGHNFSLNASFDEINVAEYDGLVIPGGRAPEYLAMDEKVLDLVRKFSDAKKPIASVCHGQ 122

Query: 129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
           LILAAA VV+GR CTAYP VKPVLIAAGA+W+E +TMA C VDGN++T A Y+GHPEFI 
Sbjct: 123 LILAAAGVVQGRSCTAYPAVKPVLIAAGANWVEADTMAKCAVDGNLVTAAAYDGHPEFIS 182

Query: 189 LFLKALGGTITGSDKRILFLCG 210
           LF+KALGG++ GS+KRILFLCG
Sbjct: 183 LFVKALGGSVAGSNKRILFLCG 204

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115461240|ref|NP_001054220.1| Os04g0671700 [Oryza sativa Japonica Group] gi|70663940|emb|CAE03602.2| OSJNBb0004A17.4 [Oryza sativa Japonica Group] gi|90265250|emb|CAH67703.1| H0624F09.11 [Oryza sativa Indica Group] gi|113565791|dbj|BAF16134.1| Os04g0671700 [Oryza sativa Japonica Group] gi|125592020|gb|EAZ32370.1| hypothetical protein OsJ_16581 [Oryza sativa Japonica Group] gi|215704721|dbj|BAG94749.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 151/202 (74%), Positives = 176/202 (87%), Gaps = 1/202 (0%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           + VLLLCGDYMEDYEAMVPFQAL A+GVSVDAACPGKK+GD C TAVHQ  GHQ TY+E+
Sbjct: 4   KKVLLLCGDYMEDYEAMVPFQALQAYGVSVDAACPGKKAGDSCRTAVHQGIGHQ-TYAES 62

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
           RGHNFALNA+FDE++  +YDGLVIPGGRAPEYLAM++ V+DLVRKFS++ K IAS+CHGQ
Sbjct: 63  RGHNFALNASFDEVNINEYDGLVIPGGRAPEYLAMDEKVLDLVRKFSDAKKPIASVCHGQ 122

Query: 129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
           LILAAA VV+ RKCTAYP VKPVL+AAGA W E +TM  C VDGN++T   Y+ HPEFI 
Sbjct: 123 LILAAAGVVQNRKCTAYPAVKPVLVAAGAKWEEADTMDKCTVDGNLVTAVAYDAHPEFIS 182

Query: 189 LFLKALGGTITGSDKRILFLCG 210
           LF+KALGG++TGS+KRILFLCG
Sbjct: 183 LFVKALGGSVTGSNKRILFLCG 204

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226498180|ref|NP_001146927.1| YLS5 [Zea mays] gi|194688460|gb|ACF78314.1| unknown [Zea mays] gi|195605312|gb|ACG24486.1| YLS5 [Zea mays] gi|414584851|tpg|DAA35422.1| TPA: YLS5 [Zea mays]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 151/202 (74%), Positives = 173/202 (85%), Gaps = 1/202 (0%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           + VL+LCGDYMEDYE MVPFQAL A+GVSVDA CP KK+GD+C TAVHQ TGHQ TYSET
Sbjct: 4   KKVLMLCGDYMEDYEVMVPFQALQAYGVSVDAVCPSKKAGDICRTAVHQLTGHQ-TYSET 62

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
           +GHNF LNA+FDEI  ++YDGLVIPGGRAPEYLAM++ V+DLVR FS + K IAS+CHGQ
Sbjct: 63  KGHNFTLNASFDEITASEYDGLVIPGGRAPEYLAMDEKVLDLVRMFSGAKKPIASVCHGQ 122

Query: 129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
           LILAAA VV+ R CTA+P VKPVL+AAGA W EP+TMA C VDGN+IT ATY  HPEFI 
Sbjct: 123 LILAAARVVENRTCTAFPAVKPVLVAAGAKWEEPDTMAKCTVDGNLITAATYNSHPEFIS 182

Query: 189 LFLKALGGTITGSDKRILFLCG 210
           LF+KALGG++ GSDKRILFLCG
Sbjct: 183 LFVKALGGSVAGSDKRILFLCG 204

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2075532	388	DJ1D [Arabidopsis thaliana (ta	0.931	0.528	0.738	1.2e-81
DICTYBASE|DDB_G0276405	194	pfp1 "DJ-1/ThiJ/PfpI family pr	0.863	0.979	0.445	3.2e-42
UNIPROTKB|Q8EH52	186	SO_1378 "Peptidase family 56"	0.831	0.983	0.470	3.6e-41
TIGR_CMR|SO_1378	186	SO_1378 "ThiJ/PfpI family prot	0.831	0.983	0.470	3.6e-41
TAIR|locus:2064955	398	YLS5 [Arabidopsis thaliana (ta	0.845	0.467	0.428	4.4e-36
TIGR_CMR|GSU_1159	167	GSU_1159 "intracellular protea	0.568	0.748	0.335	2.4e-19
UNIPROTKB|P45470	172	yhbO "protein involved in stre	0.640	0.819	0.352	1.7e-18
UNIPROTKB|Q81UM2	171	BAS0802 "ThiJ/pfpI family prot	0.763	0.982	0.263	1.5e-12
TIGR_CMR|BA_0842	171	BA_0842 "thiJ/pfpI family prot	0.763	0.982	0.263	1.5e-12
UNIPROTKB|Q3ZA81	180	DET0118 "DJ-1 family protein"	0.509	0.622	0.305	4.1e-10

TAIR|locus:2075532 DJ1D [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 155/210 (73%), Positives = 176/210 (83%)

Query:     1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
             MANS    R+VL+LCGDYMEDYE MVPFQAL AFG++V   CPGKK+GD CPTAVH   G
Sbjct:     1 MANS----RTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCG 56

Query:    61 HQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKT 120
             HQ TY E+RGHNF LNATFDE+D +KYDGLVIPGGRAPEYLA+  SV++LV++FS SGK 
Sbjct:    57 HQ-TYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKP 115

Query:   121 IASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY 180
             IASICHGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATY
Sbjct:   116 IASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATY 175

Query:   181 EGHPEFIRLFLKALGGTITGSDKRILFLCG 210
             EGHPEFI+LF+KALGG ITG++KRILFLCG
Sbjct:   176 EGHPEFIQLFVKALGGKITGANKRILFLCG 205

GO:0005737 "cytoplasm" evidence=ISM

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

DICTYBASE|DDB_G0276405 pfp1 "DJ-1/ThiJ/PfpI family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 85/191 (44%), Positives = 123/191 (64%)

Query:     9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
             R++L++ GDY EDYE     Q L   G +V    PGKKSGD   TA+H     +QTY+E 
Sbjct:     3 RNILIITGDYTEDYETYAVKQMLELVGYNVHLVSPGKKSGDFIVTAIHDFLPGEQTYTEL 62

Query:    69 RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
             +GH   LN  FD++D   Y+GL +PGGR  E+L ++D VI++V+ F+ + K IA++CHG 
Sbjct:    63 KGHRIQLNFDFDKVDTATYNGLFLPGGRCSEFLRLDDRVIEIVKDFNTNKKPIAAVCHGA 122

Query:   129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
              +L AA++V G KCTAYP  +P +  AG  + +   +   VVDG+I++G  +  HP+ I+
Sbjct:   123 QVLTAANIVSGIKCTAYPACRPEVQQAGGIY-QDIAVDDAVVDGHIVSGKAWPCHPKLIQ 181

Query:   189 LFLKALGGTIT 199
             LF+K LG TIT
Sbjct:   182 LFIKLLGTTIT 192

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8EH52 SO_1378 "Peptidase family 56" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 87/185 (47%), Positives = 117/185 (63%)

Query:    10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
             ++L++ GD++EDYE MVPFQAL   G SV   CP K +G    TA+H   G  QTY+E  
Sbjct:     3 NILIIAGDFVEDYELMVPFQALQMVGHSVTVVCPDKVAGQTIKTAIHDFEG-DQTYTEKP 61

Query:    70 GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
             GH FALN  F   + + +D L++PGGRAPEYL +N +VI LV  FS   K IA+ICHG  
Sbjct:    62 GHLFALNGNFAGANASDFDALLLPGGRAPEYLRLNPAVIALVADFSAQDKPIAAICHGAQ 121

Query:   130 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 189
             +L AADVV+G+K +AYP   P +  AGA + + E  AA + DG ++T   +  HP ++  
Sbjct:   122 LLTAADVVRGKKVSAYPACAPEVKQAGAEYCDIEVTAA-ITDGKLVTAPAWPAHPAWLAQ 180

Query:   190 FLKAL 194
             F K L
Sbjct:   181 FNKLL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1378 SO_1378 "ThiJ/PfpI family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 87/185 (47%), Positives = 117/185 (63%)

Query:    10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
             ++L++ GD++EDYE MVPFQAL   G SV   CP K +G    TA+H   G  QTY+E  
Sbjct:     3 NILIIAGDFVEDYELMVPFQALQMVGHSVTVVCPDKVAGQTIKTAIHDFEG-DQTYTEKP 61

Query:    70 GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
             GH FALN  F   + + +D L++PGGRAPEYL +N +VI LV  FS   K IA+ICHG  
Sbjct:    62 GHLFALNGNFAGANASDFDALLLPGGRAPEYLRLNPAVIALVADFSAQDKPIAAICHGAQ 121

Query:   130 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 189
             +L AADVV+G+K +AYP   P +  AGA + + E  AA + DG ++T   +  HP ++  
Sbjct:   122 LLTAADVVRGKKVSAYPACAPEVKQAGAEYCDIEVTAA-ITDGKLVTAPAWPAHPAWLAQ 180

Query:   190 FLKAL 194
             F K L
Sbjct:   181 FNKLL 185

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2064955 YLS5 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 81/189 (42%), Positives = 115/189 (60%)

Query:    10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
             SVL L GDY+EDY   VPF+AL A G  VDA  P KK G+VC TAV+     +Q  +E R
Sbjct:   211 SVLFLIGDYVEDYGINVPFRALQALGCKVDAVTPNKKKGEVCATAVYDLEDGRQIPAEKR 270

Query:    70 GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
             GHNF + A++D+I    YD +V+PGGR+PE L MN+  + LV+ F+   K  A+I  G+L
Sbjct:   271 GHNFFVTASWDDICVDDYDCVVVPGGRSPELLVMNEKAVALVKSFAEKDKVFAAIGQGKL 330

Query:   130 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 189
             +LAA  V+KG++C +   +K ++  AG   +  +    CV DG ++T A+    P F+  
Sbjct:   331 LLAATGVLKGKRCASGKGMKVMVKVAGGEAVMEK---GCVTDGKVVTAASATDLPAFLFD 387

Query:   190 FLKALGGTI 198
                ALG T+
Sbjct:   388 LSTALGLTV 396

GO:0005737 "cytoplasm" evidence=ISM

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TIGR_CMR|GSU_1159 GSU_1159 "intracellular protease, PfpI family" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 181 (68.8 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
 Identities = 44/131 (33%), Positives = 67/131 (51%)

Query:    68 TRGHNFALNA--TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASIC 125
             T  H +A+ A     E+    Y  L++PGG+AP  +    + +++ R F    + +A+IC
Sbjct:    41 TGKHGYAVTADLALAEVAADDYTILILPGGKAPAAVRREPAALEICRSFFAHVRPVAAIC 100

Query:   126 HGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPE 185
             HG   L +A ++ GR+ T Y  V   L  AGA + + E     VVDGN+IT       P 
Sbjct:   101 HGPQTLVSAGLLSGRRATCYRSVADELRGAGALYEDSEV----VVDGNLITSREPADLPA 156

Query:   186 FIRLFLKALGG 196
             F+R  +K L G
Sbjct:   157 FMREIMKKLKG 167

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

UNIPROTKB|P45470 yhbO "protein involved in stress response" [Escherichia coli K-12 (taxid:83333)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 55/156 (35%), Positives = 90/156 (57%)

Query:    45 KKSGDVCPTAVHQSTGHQQTYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAM 103
             +K+G    T + +  G  +T    +G  +  ++ + DE+ P ++D L++PGG +P+YL  
Sbjct:    26 RKAGHEVIT-IEKQAG--KTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRG 82

Query:   104 NDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA---AGASWI 160
             ++  +   R F NSGK + +ICHG  +L +ADV++GRK TA   VKP++I    AGA + 
Sbjct:    83 DNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTA---VKPIIIDVKNAGAEFY 139

Query:   161 EPETMAACVVDGN-IITGATYEGHPEFIRLFLKALG 195
             + E     VVD + ++T  T +  P F R  L+ LG
Sbjct:   140 DQEV----VVDKDQLVTSRTPDDLPAFNREALRLLG 171

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0009268 "response to pH" evidence=IMP

GO:0009411 "response to UV" evidence=IMP

UNIPROTKB|Q81UM2 BAS0802 "ThiJ/pfpI family protein" [Bacillus anthracis (taxid:1392)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 49/186 (26%), Positives = 82/186 (44%)

Query:     9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
             + + +L  DY ED E   P +A    G  +      +K        VH   G  +   +T
Sbjct:     3 KKIAILITDYFEDTEYTEPAEAFKQKGYEL-TTIEAEKG-----KTVHGKQGKSEVVIDT 56

Query:    69 RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
              G         D++ P  +D L IPGG +P+ L  ++  +   + F ++ K + +ICHG 
Sbjct:    57 -G--------IDDVSPENFDALFIPGGFSPDILRADERFVRFSKAFMDAEKPVFAICHGP 107

Query:   129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
              +L  A  ++GR  T Y  ++  L  AG ++ + E +   V    ++T    E  P FI 
Sbjct:   108 QLLITAQTLEGRDVTGYKSIEVDLKNAGGNFHDKEVV---VCQNQLVTSRQPEDIPAFIE 164

Query:   189 LFLKAL 194
               L+ L
Sbjct:   165 ESLRIL 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0842 BA_0842 "thiJ/pfpI family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 49/186 (26%), Positives = 82/186 (44%)

Query:     9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
             + + +L  DY ED E   P +A    G  +      +K        VH   G  +   +T
Sbjct:     3 KKIAILITDYFEDTEYTEPAEAFKQKGYEL-TTIEAEKG-----KTVHGKQGKSEVVIDT 56

Query:    69 RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
              G         D++ P  +D L IPGG +P+ L  ++  +   + F ++ K + +ICHG 
Sbjct:    57 -G--------IDDVSPENFDALFIPGGFSPDILRADERFVRFSKAFMDAEKPVFAICHGP 107

Query:   129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
              +L  A  ++GR  T Y  ++  L  AG ++ + E +   V    ++T    E  P FI 
Sbjct:   108 QLLITAQTLEGRDVTGYKSIEVDLKNAGGNFHDKEVV---VCQNQLVTSRQPEDIPAFIE 164

Query:   189 LFLKAL 194
               L+ L
Sbjct:   165 ESLRIL 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3ZA81 DET0118 "DJ-1 family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 37/121 (30%), Positives = 64/121 (52%)

Query:    68 TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAM--NDSVIDLVRKFSNSGKTIASIC 125
             +RG     +   DE+  + Y+ LV+PGG  P ++ M  +  V++L+R     GK +A+IC
Sbjct:    44 SRGIRIMPDLGIDELKSSDYEVLVLPGGN-PGFINMGKDQRVLELIRSAHAEGKYLAAIC 102

Query:   126 HGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPE 185
              G  +L+ A V+ G++   YP VK +L    A  +  +      V+G +ITG + +   +
Sbjct:   103 AGPAVLSRAGVINGKEVAIYPGVKHLLKGCTACDLRVK------VEGKLITGRSPQAAMD 156

Query:   186 F 186
             F
Sbjct:   157 F 157

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M8R4	DJ1D_ARATH	No assigned EC number	0.7380	0.9318	0.5283	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00440207 SubName- Full=Putative uncharacterized protein; (387 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
cd03169	180	cd03169, GATase1_PfpI_1, Type 1 glutamine amidotra	3e-95
TIGR01382	166	TIGR01382, PfpI, intracellular protease, PfpI fami	1e-53
cd03134	165	cd03134, GATase1_PfpI_like, A type 1 glutamine ami	3e-44
COG0693	188	COG0693, ThiJ, Putative intracellular protease/ami	4e-38
pfam01965	142	pfam01965, DJ-1_PfpI, DJ-1/PfpI family	7e-35
cd03135	163	cd03135, GATase1_DJ-1, Type 1 glutamine amidotrans	1e-21
cd03141	221	cd03141, GATase1_Hsp31_like, Type 1 glutamine amid	6e-17
cd03139	183	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotra	1e-15
TIGR01383	179	TIGR01383, not_thiJ, DJ-1 family protein	3e-14
cd03140	170	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotra	7e-11
pfam13278	164	pfam13278, DUF4066, Putative amidotransferase	1e-09
cd01653	115	cd01653, GATase1, Type 1 glutamine amidotransferas	3e-08
cd03128	92	cd03128, GAT_1, Type 1 glutamine amidotransferase	6e-08
cd03138	195	cd03138, GATase1_AraC_2, AraC transcriptional regu	2e-06
cd03137	187	cd03137, GATase1_AraC_1, AraC transcriptional regu	3e-06
cd03136	185	cd03136, GATase1_AraC_ArgR_like, AraC transcriptio	9e-06
cd03147	231	cd03147, GATase1_Ydr533c_like, Type 1 glutamine am	9e-06
COG4977	328	COG4977, COG4977, Transcriptional regulator contai	1e-05
cd01744	178	cd01744, GATase1_CPSase, Small chain of the glutam	5e-05
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	0.001
TIGR01737	227	TIGR01737, FGAM_synth_I, phosphoribosylformylglyci	0.003

>gnl|CDD|153243 cd03169, GATase1_PfpI_1, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score =  275 bits (706), Expect = 3e-95
 Identities = 98/185 (52%), Positives = 125/185 (67%), Gaps = 5/185 (2%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
            +L+L GD++EDYE MVPFQAL   G  VD   PGKK GD   TA+H   G Q TY+E  
Sbjct: 1   KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQ-TYTEKP 59

Query: 70  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
           GH FA+ A FDE+DP  YD LVIPGGRAPEYL +++ V+ +VR F+ + K +A+ICHG  
Sbjct: 60  GHRFAVTADFDEVDPDDYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQ 119

Query: 130 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 189
           ILAAA V+KGR+CTAYP  KP +  AG + ++       VVDGN++T   +  HP F+R 
Sbjct: 120 ILAAAGVLKGRRCTAYPACKPEVELAGGTVVDD----GVVVDGNLVTAQAWPDHPAFLRE 175

Query: 190 FLKAL 194
           FLK L
Sbjct: 176 FLKLL 180

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 180

>gnl|CDD|233389 TIGR01382, PfpI, intracellular protease, PfpI family

 Score =  169 bits (429), Expect = 1e-53
 Identities = 70/185 (37%), Positives = 100/185 (54%), Gaps = 20/185 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG 70
           +L+L  D  ED E + P   L   G  VD                        T     G
Sbjct: 2   LLVLTTDEFEDSELLYPLDRLREAGHEVDTVS-----------------KEAGTTVGKHG 44

Query: 71  HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 130
           ++  ++AT DE++P +YD LVIPGGRAPEYL +N+  + LVR+F   GK +A+ICHG  +
Sbjct: 45  YSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQL 104

Query: 131 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 190
           L +A V++G+K T+YP +   +  AGA +++ E     VVDGN++T    +  P F R F
Sbjct: 105 LISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE---VVVVDGNLVTSRVPDDLPAFNREF 161

Query: 191 LKALG 195
           LK LG
Sbjct: 162 LKLLG 166

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 166

>gnl|CDD|153228 cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

 Score =  145 bits (368), Expect = 3e-44
 Identities = 65/184 (35%), Positives = 89/184 (48%), Gaps = 21/184 (11%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG 70
           V +L  D  ED E   P   L   G  V  A P                          G
Sbjct: 2   VAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAG----------------GEIQGKHG 45

Query: 71  HN-FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
           ++   ++ T  ++D   YD LVIPGG  P+ L  +   +  VR F+ +GK +A+ICHG  
Sbjct: 46  YDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPW 105

Query: 130 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 189
           +L +A VV+GRK T+YP +K  LI AGA+W++       VVDGN+IT    +  P F R 
Sbjct: 106 VLISAGVVRGRKLTSYPSIKDDLINAGANWVD----EEVVVDGNLITSRNPDDLPAFNRA 161

Query: 190 FLKA 193
            LKA
Sbjct: 162 ILKA 165

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704. Length = 165

>gnl|CDD|223765 COG0693, ThiJ, Putative intracellular protease/amidase [General function prediction only]

 Score =  130 bits (328), Expect = 4e-38
 Identities = 71/198 (35%), Positives = 99/198 (50%), Gaps = 24/198 (12%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG 70
           + +L  D  ED E +VP+  L   G  VD A P  K                ++ +  RG
Sbjct: 5   IAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKG---------------KSVTSKRG 49

Query: 71  HNF-ALNATFDEIDPTKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
               A +  FD+ D   YD LVIPGG   PEYL  +  ++  VR F  +GK +A+ICHG 
Sbjct: 50  GLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGP 109

Query: 129 LILAAAD-VVKGRKCTAYPPVKPVLI----AAGASWIEPETMAA-CVVDGN-IITGATYE 181
            +LAAA  ++KGRK TA+P ++  +      AGA++++        VVDGN ++TG    
Sbjct: 110 AVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPA 169

Query: 182 GHPEFIRLFLKALGGTIT 199
             P F    LKALGG   
Sbjct: 170 SAPAFALELLKALGGAEK 187

Length = 188

>gnl|CDD|216814 pfam01965, DJ-1_PfpI, DJ-1/PfpI family

 Score =  120 bits (303), Expect = 7e-35
 Identities = 52/132 (39%), Positives = 78/132 (59%), Gaps = 6/132 (4%)

Query: 66  SETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASI 124
            +        + T D+++   YD LVIPGG A  E L  ++ ++  V++F  SGK IA+I
Sbjct: 15  GKNGKVKVRADKTLDDVNADDYDALVIPGGHAGAEDLRDDEKLVKFVKEFYESGKPIAAI 74

Query: 125 CHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN-IITGATYEGH 183
           CHG ++LAAA ++KGR+ T++P VK +L  AGA +++       VVDGN ++T A     
Sbjct: 75  CHGPVVLAAAGLLKGRRVTSFPSVKELLKNAGAEYVDQ----PVVVDGNKLVTSAGPGSA 130

Query: 184 PEFIRLFLKALG 195
            EF    L+ALG
Sbjct: 131 EEFALELLEALG 142

The family includes the protease PfpI. This domain is also found in transcriptional regulators. This N-terminal region of the full-length AdpA proteins is necessary for dimerisation of the molecule. Length = 142

>gnl|CDD|153229 cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

 Score = 86.8 bits (216), Expect = 1e-21
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 23/168 (13%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG 70
           VL++  D  E+ EA+ P   L   G+ V  A                S   +     + G
Sbjct: 1   VLVILADGFEEIEAVTPVDVLRRAGIEVTTA----------------SLEKKLAVGSSHG 44

Query: 71  HNFALNATFDEIDPTKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
                + T  +++   YD +VIPGG    + LA N+ +I L+++F+  GK IA+IC    
Sbjct: 45  IKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPA 104

Query: 130 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 177
           +LA A ++KG+K T YP  +  L  A             VVDGNIIT 
Sbjct: 105 VLAKAGLLKGKKATCYPGFEDKLGGANYVD------EPVVVDGNIITS 146

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly conserved cysteine located at the nucelophile elbow region typical of these domains. This cysteine been proposed to be a site of regulation of DJ-1 activity by oxidation. DJ-1 is a dimeric enzyme. Length = 163

>gnl|CDD|153235 cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

 Score = 75.7 bits (187), Expect = 6e-17
 Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 32/184 (17%)

Query: 23  EAMVPFQALLAFGVSVDAACP-GKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNA---- 77
           E   P+      G  VD A P G K   + P ++          S               
Sbjct: 24  ELAHPYDVFTEAGYEVDFASPKGGKVP-LDPRSL--DAEDDDDASVFDNDEEFKKKLANT 80

Query: 78  -TFDEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 135
               ++DP+ YD + IPGG  P + L  N  + DL+R+F  +GK +A++CHG   L    
Sbjct: 81  KKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVK 140

Query: 136 ------VVKGRKCTAYP-------PVKPV--------LIAAGASWIEPETMAA-CVVDGN 173
                 +V G+  T +         +K V        L   GA++++ E  A   VVDG 
Sbjct: 141 LSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVVVDGR 200

Query: 174 IITG 177
           +ITG
Sbjct: 201 LITG 204

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers. Length = 221

>gnl|CDD|153233 cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 68  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127
             G     + +F   DP   D L++PGG     L  + +++D +R+ +   K + S+C G
Sbjct: 46  RSGLTVLPDTSFA--DPPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTG 103

Query: 128 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 178
            L+LAAA ++ GR+ T +      L   GA        A  VVDGNI T  
Sbjct: 104 ALLLAAAGLLDGRRATTHWAAIDWLKEFGA---IVVVDARWVVDGNIWTSG 151

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 183

>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 77  ATFDEIDPTKYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 135
           A+ +++D  K+D +V+PGG    E L  +  ++++++   + GK +A+IC    +L A  
Sbjct: 54  ASLEDVDLEKFDVIVLPGGMPGAENLRNSKLLLNILKSQESKGKLVAAICAAPAVLLAHG 113

Query: 136 VVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 178
           V+ G+K T YP  K  L     ++   +T+   VVDGN+IT  
Sbjct: 114 VLLGKKATCYPGFKEKL--LNGNYSVNKTV---VVDGNLITSR 151

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PMID:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus [Unknown function, General]. Length = 179

>gnl|CDD|153234 cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

 Score = 58.4 bits (142), Expect = 7e-11
 Identities = 41/128 (32%), Positives = 57/128 (44%), Gaps = 24/128 (18%)

Query: 79  FDEIDPTKYDGLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 135
            D++ P  YD L++PGG +   PE       +  LVR+    GK +A+IC   L LA A 
Sbjct: 53  LDDLPPEDYDLLILPGGDSWDNPE----APDLAGLVRQALKQGKPVAAICGATLALARAG 108

Query: 136 VVKGRKCT--------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 187
           ++  RK T        A+ P           + EP+     V DGN+IT A      EF 
Sbjct: 109 LLNNRKHTSNSLDFLKAHAP----YYGGAEYYDEPQA----VSDGNLIT-ANGTAPVEFA 159

Query: 188 RLFLKALG 195
              L+AL 
Sbjct: 160 AEILRALD 167

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 170

>gnl|CDD|222020 pfam13278, DUF4066, Putative amidotransferase

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)

Query: 68  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127
           T  +   +       D  + D +++PGG      A + +++  ++    +G+ + ++C G
Sbjct: 42  TSMNGVTITVDAPLADAPEADAVLVPGGPGTRAAAADPALLAQLQLADPAGQLLGAVCSG 101

Query: 128 QLILAAADVVKGRKCTAYPPVKPVLIAAGA--SWIEPETMAACVVDGNIIT 176
            L+LA A ++ GR  T +  +KP L  AG     I+       V DGN+ T
Sbjct: 102 ALLLAEAGLLDGRPATTHWTLKPWLREAGPKVLLID----RPFVADGNLAT 148

This domain contains similarities to other amidotransferase families such as pfam00117. Some members of the family lack the likely catalytic residues. Length = 164

>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 31/122 (25%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG 70
           V +L     E+ E   P  AL   G  VD   P     +                     
Sbjct: 1   VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVE--------------------- 39

Query: 71  HNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
                     ++D   YDGL++PGG   P+ LA +++++ L+R+ + +GK I  IC G  
Sbjct: 40  ---------SDVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQ 90

Query: 130 IL 131
           +L
Sbjct: 91  LL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Length = 115

>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 48.4 bits (115), Expect = 6e-08
 Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 80  DEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL 131
            ++D   YDGL++PGG   P+ LA +++++ L+R+ + +GK +  IC G  +L
Sbjct: 40  SDVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain. Length = 92

>gnl|CDD|153232 cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 26/110 (23%)

Query: 83  DPTKYDGLVIPG-GRAPEYLAMND--SVIDLVRKFSNSGKTIASICHGQLILAAADVVKG 139
           D    D +++PG G  P+ L + D  ++I  +R+   +G T+A+ C G  +LA A ++ G
Sbjct: 66  DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDG 125

Query: 140 RKCT-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 178
           R+ T            +P V+          ++P+ +   V DGN+IT  
Sbjct: 126 RRATTHWWLAPQFRRRFPKVR----------LDPDRVV--VTDGNLITAG 163

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 195

>gnl|CDD|153231 cd03137, GATase1_AraC_1, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 23/103 (22%)

Query: 87  YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCT--- 143
            D +++PGG   +      +++  +R+ +  G  +AS+C G  +LA A ++ GR+ T   
Sbjct: 65  ADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHW 124

Query: 144 --------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 178
                    +P V+          ++P+     V DGN+ T A
Sbjct: 125 AYAEDLARRFPAVR----------VDPD--VLYVDDGNVWTSA 155

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 187

>gnl|CDD|153230 cd03136, GATase1_AraC_ArgR_like, AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

 Score = 44.1 bits (105), Expect = 9e-06
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 83  DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKC 142
           D    D L + GG      A+  +++  +R+ +  G  +  I  G  +LA A ++ GR+ 
Sbjct: 61  DAPPLDYLFVVGGLGARR-AVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRA 119

Query: 143 TA 144
           T 
Sbjct: 120 TV 121

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Length = 185

>gnl|CDD|153241 cd03147, GATase1_Ydr533c_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 37/135 (27%)

Query: 77  ATFDEIDPTKYDGLVIPGGRAPEYLAMND-----SVIDLVRKFSNSGKTIASICHGQLIL 131
              DE++P  Y    + GG       + D     ++  + ++   +G  +A++CHG  IL
Sbjct: 85  KKADEVNPDDYGIFFVAGGHG----TLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAIL 140

Query: 132 AAAD-------VVKGRKCTAY-------------------PPVKPVLIAAGASWIEPETM 165
           A          ++KG+  T +                     ++ +   AGA++I P   
Sbjct: 141 ANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRNLESIEDIAERAGANFIRPPGP 200

Query: 166 AA--CVVDGNIITGA 178
                VVDG I+TG+
Sbjct: 201 WDDFTVVDGRIVTGS 215

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer. Length = 231

>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 24/117 (20%)

Query: 73  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 132
            ++            D L + GG  PE      +++  +R+ +  G  +  +C G  +LA
Sbjct: 63  LSIAPDGGLEAAPPIDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLA 122

Query: 133 AADVVKGRKCT-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 178
            A ++ GR+ T            +P V+              T    V+DG+ IT A
Sbjct: 123 EAGLLDGRRATTHWEHAEDFQERFPDVR-------------VTDRLFVIDGDRITCA 166

Length = 328

>gnl|CDD|153215 cd01744, GATase1_CPSase, Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 76  NATFDEIDPTKYDGLVI---PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 132
           N   +EI     DG+ +   PG   P  L   D  I  VRK       I  IC G  +LA
Sbjct: 29  NTDAEEILKLDPDGIFLSNGPGD--PALL---DEAIKTVRKLLGKKIPIFGICLGHQLLA 83

Query: 133 AA 134
            A
Sbjct: 84  LA 85

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is a heterodimer consisting of two polypeptide chains referred to as the small and large subunit. Ammonia an intermediate during the biosynthesis of carbomyl phosphate produced by the hydrolysis of glutamine in the small subunit of the enzyme is delivered via a molecular tunnel between the remotely located carboxyphosphate active site in the large subunit. CPSase IIs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. This group also contains the sequence from the mammalian urea cycle form which has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I. Length = 178

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 76  NATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG-QLILAA- 133
           +   +EI     DG++I  G  P         I+ +++   +   I  IC G QL+  A 
Sbjct: 30  DTPAEEILELNPDGIIISPG--PGSPGALGGAIEAIKELRENKIPILGICLGHQLLALAF 87

Query: 134 -ADVVKGRK 141
              V+K +K
Sbjct: 88  GGKVIKAKK 96

Length = 186

>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase I

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 79  FDEIDPTKYDGLVIPGG-RAPEYL-----AMNDSVIDLVRKFSNSGKTIASICHGQLILA 132
           +++     YDG+V+PGG    +YL     A    ++  VR+F+  G  +  IC+G  IL 
Sbjct: 33  YEDGSLPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILV 92

Query: 133 AADVVKG 139
            A ++ G
Sbjct: 93  EAGLLPG 99

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 227

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
TIGR01382	166	PfpI intracellular protease, PfpI family. The memb	100.0
cd03134	165	GATase1_PfpI_like A type 1 glutamine amidotransfer	100.0
cd03135	163	GATase1_DJ-1 Type 1 glutamine amidotransferase (GA	100.0
cd03169	180	GATase1_PfpI_1 Type 1 glutamine amidotransferase (	100.0
TIGR01383	179	not_thiJ DJ-1 family protein. This model represent	100.0
cd03137	187	GATase1_AraC_1 AraC transcriptional regulators hav	100.0
cd03139	183	GATase1_PfpI_2 Type 1 glutamine amidotransferase (	100.0
cd03136	185	GATase1_AraC_ArgR_like AraC transcriptional regula	100.0
PRK09393	322	ftrA transcriptional activator FtrA; Provisional	100.0
PF13278	166	DUF4066: Putative amidotransferase; PDB: 3BHN_A 3M	100.0
cd03138	195	GATase1_AraC_2 AraC transcriptional regulators hav	100.0
cd03140	170	GATase1_PfpI_3 Type 1 glutamine amidotransferase (	100.0
COG4977	328	Transcriptional regulator containing an amidase do	100.0
PRK11574	196	oxidative-stress-resistance chaperone; Provisional	100.0
KOG2764	247	consensus Putative transcriptional regulator DJ-1	99.98
cd03147	231	GATase1_Ydr533c_like Type 1 glutamine amidotransfe	99.97
cd03141	221	GATase1_Hsp31_like Type 1 glutamine amidotransfera	99.97
PRK04155	287	chaperone protein HchA; Provisional	99.97
COG0693	188	ThiJ Putative intracellular protease/amidase [Gene	99.97
cd03148	232	GATase1_EcHsp31_like Type 1 glutamine amidotransfe	99.97
PF01965	147	DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 T	99.96
PRK11780	217	isoprenoid biosynthesis protein with amidotransfer	99.95
cd03133	213	GATase1_ES1 Type 1 glutamine amidotransferase (GAT	99.94
cd03132	142	GATase1_catalase Type 1 glutamine amidotransferase	99.91
PRK11249	752	katE hydroperoxidase II; Provisional	99.75
cd01740	238	GATase1_FGAR_AT Type 1 glutamine amidotransferase	99.42
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	99.41
COG3155	217	ElbB Uncharacterized protein involved in an early	99.37
PRK01175	261	phosphoribosylformylglycinamidine synthase I; Prov	99.35
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	99.25
COG0047	231	PurL Phosphoribosylformylglycinamidine (FGAM) synt	99.24
cd01653	115	GATase1 Type 1 glutamine amidotransferase (GATase1	99.03
PRK13526	179	glutamine amidotransferase subunit PdxT; Provision	98.98
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	98.97
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.92
PF13507	259	GATase_5: CobB/CobQ-like glutamine amidotransferas	98.85
cd03128	92	GAT_1 Type 1 glutamine amidotransferase (GATase1)-	98.81
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	98.75
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	98.59
cd03130	198	GATase1_CobB Type 1 glutamine amidotransferase (GA	98.53
PRK08250	235	glutamine amidotransferase; Provisional	98.51
cd01750	194	GATase1_CobQ Type 1 glutamine amidotransferase (GA	98.46
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	98.46
PRK07053	234	glutamine amidotransferase; Provisional	98.45
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	98.41
TIGR01857	1239	FGAM-synthase phosphoribosylformylglycinamidine sy	98.4
PLN03206	1307	phosphoribosylformylglycinamidine synthase; Provis	98.34
COG0311	194	PDX2 Predicted glutamine amidotransferase involved	98.3
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	98.28
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	98.26
TIGR01735	1310	FGAM_synt phosphoribosylformylglycinamidine syntha	98.26
PRK05297	1290	phosphoribosylformylglycinamidine synthase; Provis	98.25
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	98.23
PRK06490	239	glutamine amidotransferase; Provisional	98.23
PHA03366	1304	FGAM-synthase; Provisional	98.14
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	98.12
PRK06895	190	putative anthranilate synthase component II; Provi	98.12
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	98.11
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	98.07
TIGR01739	1202	tegu_FGAM_synt herpesvirus tegument protein/v-FGAM	98.06
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	98.03
PRK09065	237	glutamine amidotransferase; Provisional	97.99
PRK05665	240	amidotransferase; Provisional	97.97
PF07685	158	GATase_3: CobB/CobQ-like glutamine amidotransferas	97.89
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	97.85
PF01174	188	SNO: SNO glutamine amidotransferase family; InterP	97.84
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	97.83
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	97.78
PRK00784	488	cobyric acid synthase; Provisional	97.76
PRK07567	242	glutamine amidotransferase; Provisional	97.76
PRK08007	187	para-aminobenzoate synthase component II; Provisio	97.76
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	97.75
PRK07765	214	para-aminobenzoate synthase component II; Provisio	97.75
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	97.75
PRK06774	191	para-aminobenzoate synthase component II; Provisio	97.74
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	97.74
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	97.68
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	97.67
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.66
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	97.61
PRK05670	189	anthranilate synthase component II; Provisional	97.54
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	97.54
PRK05637	208	anthranilate synthase component II; Provisional	97.46
PRK08857	193	para-aminobenzoate synthase component II; Provisio	97.46
CHL00101	190	trpG anthranilate synthase component 2	97.45
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	97.42
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	97.4
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	97.4
PLN02335	222	anthranilate synthase	97.39
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	97.35
PRK13566	720	anthranilate synthase; Provisional	97.34
PRK00758	184	GMP synthase subunit A; Validated	97.32
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	97.31
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	97.31
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	97.28
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	97.28
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	97.24
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	97.23
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	97.2
cd03146	212	GAT1_Peptidase_E Type 1 glutamine amidotransferase	97.18
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	97.15
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	97.15
cd03144	114	GATase1_ScBLP_like Type 1 glutamine amidotransfera	97.15
TIGR00313	475	cobQ cobyric acid synthase CobQ.	97.1
PRK05282	233	(alpha)-aspartyl dipeptidase; Validated	97.05
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	97.04
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	96.72
PF09825	367	BPL_N: Biotin-protein ligase, N terminal; InterPro	96.69
KOG3210	226	consensus Imidazoleglycerol-phosphate synthase sub	96.64
PLN02347	536	GMP synthetase	96.57
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	96.51
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	96.47
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	96.46
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	96.24
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	96.23
PRK00074	511	guaA GMP synthase; Reviewed	96.21
PRK05380	533	pyrG CTP synthetase; Validated	95.91
COG2071	243	Predicted glutamine amidotransferases [General fun	95.88
PRK06186	229	hypothetical protein; Validated	95.77
cd03129	210	GAT1_Peptidase_E_like Type 1 glutamine amidotransf	95.74
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	95.18
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	95.17
COG3442	250	Predicted glutamine amidotransferase [General func	94.99
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	94.98
PLN02327	557	CTP synthase	94.8
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	94.72
PF13587	38	DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family	94.62
KOG3179	245	consensus Predicted glutamine synthetase [Nucleoti	94.5
PRK05368	302	homoserine O-succinyltransferase; Provisional	94.42
TIGR02069	250	cyanophycinase cyanophycinase. This model describe	94.02
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	93.45
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	93.35
PF03575	154	Peptidase_S51: Peptidase family S51; InterPro: IPR	93.11
PLN02889	918	oxo-acid-lyase/anthranilate synthase	93.01
KOG1907	1320	consensus Phosphoribosylformylglycinamidine syntha	92.75
KOG0370	1435	consensus Multifunctional pyrimidine synthesis pro	92.58
cd03145	217	GAT1_cyanophycinase Type 1 glutamine amidotransfer	92.04
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	91.93
cd03131	175	GATase1_HTS Type 1 glutamine amidotransferase (GAT	90.95
KOG2764	247	consensus Putative transcriptional regulator DJ-1	90.89
PF09822	271	ABC_transp_aux: ABC-type uncharacterized transport	89.61
COG4285	253	Uncharacterized conserved protein [Function unknow	89.3
PRK02645	305	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	89.16
COG4635	175	HemG Flavodoxin [Energy production and conversion	88.97
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	88.7
PRK01231	295	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	87.19
KOG2387	585	consensus CTP synthase (UTP-ammonia lyase) [Nucleo	85.79
PRK11104	177	hemG protoporphyrinogen oxidase; Provisional	84.59
PRK02155	291	ppnK NAD(+)/NADH kinase family protein; Provisiona	84.39
PF08532	207	Glyco_hydro_42M: Beta-galactosidase trimerisation	82.71
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	82.22
cd03143	154	A4_beta-galactosidase_middle_domain A4 beta-galact	81.9
PRK03378	292	ppnK inorganic polyphosphate/ATP-NAD kinase; Provi	80.35
PF03698	80	UPF0180: Uncharacterised protein family (UPF0180);	80.15

>TIGR01382 PfpI intracellular protease, PfpI family

Probab=100.00  E-value=4.2e-36  Score=229.96  Aligned_cols=166  Identities=42%  Similarity=0.731  Sum_probs=152.1

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      ||+|++++||+..|+..|+++|+.+|+++.++|++++                 ++.++.|..+.++.++++.+..+||+
T Consensus         1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-----------------~v~~~~g~~i~~~~~~~~~~~~~~D~   63 (166)
T TIGR01382         1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAG-----------------TTVGKHGYSVTVDATIDEVNPEEYDA   63 (166)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCC-----------------ceeccCCceeeccCChhhCCHHHCcE
Confidence            6999999999999999999999999999999998765                 78889999999999998876668999


Q ss_pred             EEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceEE
Q 027708           90 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACV  169 (220)
Q Consensus        90 liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v  169 (220)
                      |+||||.++..+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++.+.++.+.+   .++
T Consensus        64 vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~---~~v  140 (166)
T TIGR01382        64 LVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIE---VVV  140 (166)
T ss_pred             EEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCC---CEE
Confidence            99999977555567899999999999999999999999999999999999999999999999998888888743   399


Q ss_pred             EcCCEEeCCCCCCHHHHHHHHHHHHc
Q 027708          170 VDGNIITGATYEGHPEFIRLFLKALG  195 (220)
Q Consensus       170 ~dg~iiTs~g~~s~~~~~~~li~~l~  195 (220)
                      +|||+|||+|+.++.+|+..+++.++
T Consensus       141 ~dg~iiT~~~~~~~~~fa~~~~~~l~  166 (166)
T TIGR01382       141 VDGNLVTSRVPDDLPAFNREFLKLLG  166 (166)
T ss_pred             EECCEEEeCCcccHHHHHHHHHHHhC
Confidence            99999999999999999999999874

The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.

>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus

Probab=100.00  E-value=1.5e-35  Score=226.65  Aligned_cols=162  Identities=40%  Similarity=0.690  Sum_probs=149.1

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCC-CCCCCCCCcccccCCCcccccccccCc-ccccCcCcCCCCCCCc
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPG-KKSGDVCPTAVHQSTGHQQTYSETRGH-NFALNATFDEIDPTKY   87 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~-~~~~~~~~~~~~~~~~~~~~v~~~~g~-~i~~~~~l~~~~~~~~   87 (220)
                      ||+|+++|||+..|+..+.++|+.+|+++.+++++ ++                 ++.++.|. .+.++..+++....+|
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~-----------------~v~~~~g~~~i~~d~~~~~~~~~~~   63 (165)
T cd03134           1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGG-----------------EIQGKHGYDTVTVDLTIADVDADDY   63 (165)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCc-----------------ccccCcCceeecCCCChHHCCHHHC
Confidence            69999999999999999999999999999999987 54                 78889999 9999999988766689


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCce
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  167 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~  167 (220)
                      |+|+||||.++..+..++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++.+.++.+.+    
T Consensus        64 D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~----  139 (165)
T cd03134          64 DALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEE----  139 (165)
T ss_pred             CEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCC----
Confidence            9999999986555567899999999999999999999999999999999999999999999999988877777654    


Q ss_pred             EEEcCCEEeCCCCCCHHHHHHHHHH
Q 027708          168 CVVDGNIITGATYEGHPEFIRLFLK  192 (220)
Q Consensus       168 ~v~dg~iiTs~g~~s~~~~~~~li~  192 (220)
                      +++|||+|||+|+.++.+|+..+++
T Consensus       140 ~v~dg~iiT~~~~~~~~~f~~~~~~  164 (165)
T cd03134         140 VVVDGNLITSRNPDDLPAFNRAILK  164 (165)
T ss_pred             EEEECCEEEecCcchHHHHHHHHHh
Confidence            8999999999999999999999986

A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.

>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1

Probab=100.00  E-value=2.8e-35  Score=224.48  Aligned_cols=161  Identities=36%  Similarity=0.585  Sum_probs=143.7

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccc-cccCcccccCcCcCCCCCCCccE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYS-ETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~-~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      |+|+++|||+..|+..+.++|+.+|+++.++|++++                 ++. ++.|+.+.++..+++.+..+||+
T Consensus         1 v~il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~-----------------~~~~~~~g~~v~~~~~~~~~~~~~~D~   63 (163)
T cd03135           1 VLVILADGFEEIEAVTPVDVLRRAGIEVTTASLEKK-----------------LAVGSSHGIKVKADKTLSDVNLDDYDA   63 (163)
T ss_pred             CEEEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCC-----------------ceEeccCCCEEEecCCHhHcCCCCCCE
Confidence            689999999999999999999999999999999875                 444 57899999999999876679999


Q ss_pred             EEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceE
Q 027708           90 LVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  168 (220)
Q Consensus        90 liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~  168 (220)
                      ||||||. .+..+.+++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+  .+.++.+..    +
T Consensus        64 liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~--~~~~~~~~~----~  137 (163)
T cd03135          64 IVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKL--GGANYVDEP----V  137 (163)
T ss_pred             EEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhc--CCCeEecCC----E
Confidence            9999998 55555679999999999999999999999999999999999999999998876655  345666553    9


Q ss_pred             EEcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708          169 VVDGNIITGATYEGHPEFIRLFLKAL  194 (220)
Q Consensus       169 v~dg~iiTs~g~~s~~~~~~~li~~l  194 (220)
                      ++|||++||+|+.++.++++++|+++
T Consensus       138 v~dg~l~T~~g~~s~~d~al~li~~l  163 (163)
T cd03135         138 VVDGNIITSRGPGTAFEFALKIVEAL  163 (163)
T ss_pred             EEECCEEEcCCcccHHHHHHHHHHhC
Confidence            99999999999999999999999874

Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly

>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=1.4e-34  Score=224.45  Aligned_cols=180  Identities=54%  Similarity=0.984  Sum_probs=150.3

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      ||+|+++||++..|+..|+++|+++|++|+++|+++++.++.+.......+. ..+.+..|..+.++..+++.++.+||+
T Consensus         1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~D~   79 (180)
T cd03169           1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGW-QTYTEKPGHRFAVTADFDEVDPDDYDA   79 (180)
T ss_pred             CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccc-cchhccCCcEEeccCCcccCCHhHCCE
Confidence            6999999999999999999999999999999999876322111111101111 134455688899999999877678999


Q ss_pred             EEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceEE
Q 027708           90 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACV  169 (220)
Q Consensus        90 liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v  169 (220)
                      |+||||.++..+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+||...+.+++.+..+.+..    ++
T Consensus        80 liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~~~~~~~----~v  155 (180)
T cd03169          80 LVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGGTVVDDG----VV  155 (180)
T ss_pred             EEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCCEEeecc----EE
Confidence            99999987655556889999999999999999999999999999999999999999999999998766665543    89


Q ss_pred             EcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708          170 VDGNIITGATYEGHPEFIRLFLKAL  194 (220)
Q Consensus       170 ~dg~iiTs~g~~s~~~~~~~li~~l  194 (220)
                      +|||+|||+|+.++.+|+.++++.|
T Consensus       156 ~D~~iiT~~~~~~~~~f~~~~~~~l  180 (180)
T cd03169         156 VDGNLVTAQAWPDHPAFLREFLKLL  180 (180)
T ss_pred             EECCEEEecCCchHHHHHHHHHHhC
Confidence            9999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>TIGR01383 not_thiJ DJ-1 family protein

Probab=100.00  E-value=3.9e-35  Score=227.18  Aligned_cols=169  Identities=30%  Similarity=0.477  Sum_probs=145.9

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEE--EcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDA--ACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~--~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ||+|+++|||+..|+..|.++|+.+|+++.+  +|++++.                ++++++|+.+.++..+++.+.++|
T Consensus         1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~g~~----------------~v~~~~g~~v~~~~~~~~~~~~~~   64 (179)
T TIGR01383         1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLNGKL----------------PVKGSRGVKILADASLEDVDLEEF   64 (179)
T ss_pred             CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccCCCc----------------ceEcCCCCEEeCCCCHHHCCcccC
Confidence            6999999999999999999999999987775  8876531                788999999999999988766789


Q ss_pred             cEEEEcCCCC-cccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCc
Q 027708           88 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  166 (220)
Q Consensus        88 D~liipGG~~-~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~  166 (220)
                      |+||||||.. ...+..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||.+.+.+++.  .+....   
T Consensus        65 D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~aGlL~g~~~T~~~~~~~~~~~~--~~~~~~---  139 (179)
T TIGR01383        65 DAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAAGVLLGKKATCYPGFKEKLLNG--NYSVNE---  139 (179)
T ss_pred             CEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhcCCCCCCcEEECccHHHhccCC--ceeCCC---
Confidence            9999999963 3445578999999999999999999999999999999999999999999877665442  343233   


Q ss_pred             eEEEcCCEEeCCCCCCHHHHHHHHHHHHccccc
Q 027708          167 ACVVDGNIITGATYEGHPEFIRLFLKALGGTIT  199 (220)
Q Consensus       167 ~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a  199 (220)
                      .+++||+++||+|+.++.++++++|+++.|+..
T Consensus       140 ~~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~~  172 (179)
T TIGR01383       140 AVVVDGNIITSRGPGTAIEFALALVELLCGKEK  172 (179)
T ss_pred             CEEEeCCEEECCChhhHHHHHHHHHHHhcCHHH
Confidence            489999999999999999999999998877643

This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.

>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=5.4e-35  Score=227.93  Aligned_cols=168  Identities=20%  Similarity=0.289  Sum_probs=148.4

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCC-------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCC
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEID   83 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~   83 (220)
                      |+|+++|||+..|+..+.++|+.+|       +++.+++++++                 ++++++|+++.+|..+++. 
T Consensus         1 i~ill~~gf~~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-----------------~v~~~~g~~v~~d~~~~~~-   62 (187)
T cd03137           1 VAVLVFPGVSLLDLSGPAEVFGEANRALGPPAYELRVCSPEGG-----------------PVRSSSGLSLVADAGLDAL-   62 (187)
T ss_pred             CEEEEeCCCChhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCC-----------------ceeecCCcEEEcCcCcccc-
Confidence            6899999999999999999999988       78888887654                 8899999999999988843 


Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH-CCCeEecC
Q 027708           84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEP  162 (220)
Q Consensus        84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~-~g~~~~~~  162 (220)
                       ++||+|+||||........++.+.+||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++ +|...+..
T Consensus        63 -~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~t~~~~~~~~l~~~~~~~~~~~  141 (187)
T cd03137          63 -AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEAGLLDGRRATTHWAYAEDLARRFPAVRVDP  141 (187)
T ss_pred             -CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHccCcCCCceeehHhhHHHHHHHCCCCEEec
Confidence             5899999999977654678999999999999999999999999999999999999999999999999988 56554433


Q ss_pred             CCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccccc
Q 027708          163 ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT  199 (220)
Q Consensus       163 ~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a  199 (220)
                      +.  .+++||+++||+|+.+++|+++++|+++.|+..
T Consensus       142 ~~--~~v~dg~i~Ta~g~~~~~d~~l~li~~~~g~~~  176 (187)
T cd03137         142 DV--LYVDDGNVWTSAGVTAGIDLCLHLVREDLGAAV  176 (187)
T ss_pred             CC--EEEecCCEEEcccHHHHHHHHHHHHHHHhCHHH
Confidence            22  488999999999999999999999998777644

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=2.7e-35  Score=228.78  Aligned_cols=173  Identities=24%  Similarity=0.316  Sum_probs=151.9

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCC-----CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT   85 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag-----~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~   85 (220)
                      |+|+++|||++.|+..+.++|+.+|     +++.++|++++                 ++++++|..+.+|.++++.  .
T Consensus         1 i~ill~~gf~~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~-----------------~v~~~~g~~i~~d~~~~~~--~   61 (183)
T cd03139           1 VGILLFPGVEVLDVIGPYEVFGRAPRLAAPFEVFLVSETGG-----------------PVSSRSGLTVLPDTSFADP--P   61 (183)
T ss_pred             CEEEEeCCCCEehheeHHHHHHHhhccCCCEEEEEEECCCC-----------------ceEeCCCCEEcCCcccccC--C
Confidence            6899999999999999999999999     99999998765                 8999999999999998864  4


Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCC
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM  165 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~  165 (220)
                      +||+|+||||.++..+..++.+++||+++++++|+|+++|+|+++|+++|+|+|+++|+||...+.+++.+.++...   
T Consensus        62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~agll~g~~~t~~~~~~~~~~~~~~~~~~~---  138 (183)
T cd03139          62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAAGLLDGRRATTHWAAIDWLKEFGAIVVVD---  138 (183)
T ss_pred             CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhcCCcCCCeeeecHhHHHHHHHhCCCCCCC---
Confidence            89999999997766567899999999999999999999999999999999999999999999999998864443222   


Q ss_pred             ceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc-cccc-ccce
Q 027708          166 AACVVDGNIITGATYEGHPEFIRLFLKALGGT-ITGS-DKRI  205 (220)
Q Consensus       166 ~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~-~a~~-~~~~  205 (220)
                      ..+++||+++||+|+.++.++++++|+++.|+ .+.+ ++.+
T Consensus       139 ~~~v~dg~i~T~~g~~a~~~~~l~ii~~~~g~~~a~~~a~~~  180 (183)
T cd03139         139 ARWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAVALLI  180 (183)
T ss_pred             CEEEecCCEEEcCcHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence            25999999999999999999999999987776 4444 4433

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=2.1e-34  Score=224.26  Aligned_cols=165  Identities=16%  Similarity=0.165  Sum_probs=145.9

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCC-------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCC
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEID   83 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~   83 (220)
                      |+|+++|||...|+..++|+|+.+|       +++.++|.+++                 ++.+++|+.+.++..+.+. 
T Consensus         1 i~il~~~g~~~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~-----------------~v~~~~g~~i~~d~~~~~~-   62 (185)
T cd03136           1 FGFLLLPGFSLLALASAIEPLRAANRLAGRELYRWRVLSLDGA-----------------PVTSSNGLRVAPDAALEDA-   62 (185)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCC-----------------eeecCCCcEEeCCcccccc-
Confidence            6899999999999999999999876       67777777654                 8889999999999888754 


Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH-CC-CeEec
Q 027708           84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AG-ASWIE  161 (220)
Q Consensus        84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~-~g-~~~~~  161 (220)
                       ++||+||||||.... +..++.+++||++++++++.|+++|+|+++|+++|+|+|+++|+||...+.+++ +| .++.+
T Consensus        63 -~~~D~liipgg~~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~aGll~g~~~t~~~~~~~~~~~~~p~~~~~~  140 (185)
T cd03136          63 -PPLDYLFVVGGLGAR-RAVTPALLAWLRRAARRGVALGGIDTGAFLLARAGLLDGRRATVHWEHLEAFAEAFPRVQVTR  140 (185)
T ss_pred             -CCCCEEEEeCCCCcc-ccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHccccCCCeeEECcccHHHHHHHCCCCcccc
Confidence             589999999997655 578999999999999999999999999999999999999999999999999987 44 45543


Q ss_pred             CCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccccc
Q 027708          162 PETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT  199 (220)
Q Consensus       162 ~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a  199 (220)
                      .    .++.||++|||+|+.+++++++++|+++.|+..
T Consensus       141 ~----~~v~dg~i~Ta~g~~~~~d~~l~ii~~~~g~~~  174 (185)
T cd03136         141 D----LFEIDGDRLTCAGGTAALDLMLELIARDHGAAL  174 (185)
T ss_pred             C----eEEEcCCEEEeccHHHHHHHHHHHHHHHhCHHH
Confidence            3    389999999999999999999999998877744

A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee

>PRK09393 ftrA transcriptional activator FtrA; Provisional

Probab=100.00  E-value=7.1e-34  Score=239.24  Aligned_cols=183  Identities=21%  Similarity=0.300  Sum_probs=154.8

Q ss_pred             CCCCCCCCCeEEEEecCCCCchhhHHHHHHHHhCC-------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCccc
Q 027708            1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNF   73 (220)
Q Consensus         1 ~~~~~~~~~kI~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i   73 (220)
                      |++|+  +++|+|+++|||+..|++++.|+|+.++       +++.+++.+++                 +|.+++|+.+
T Consensus         4 ~~~~~--~~~v~ill~~gf~~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~-----------------~v~ss~g~~i   64 (322)
T PRK09393          4 MMTMH--NHLVVALAYDGLCTFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPG-----------------PLRAAGGITV   64 (322)
T ss_pred             ccccc--ccEEEEEEcCCCChhHHHHHHHHHHHHHhhcCCCceEEEEEECCCC-----------------ceEeCCCcEE
Confidence            66776  6899999999999999999999998764       45666666543                 8999999999


Q ss_pred             ccCcCcCCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHH
Q 027708           74 ALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLI  153 (220)
Q Consensus        74 ~~~~~l~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~  153 (220)
                      .+|..+++.  ++||+||||||.+... ..++.+.+||++++++++.|++||+|+++||++|||+|+++|+||...+.++
T Consensus        65 ~~d~~~~~~--~~~D~livpGg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~~~Tth~~~~~~~~  141 (322)
T PRK09393         65 VADGGLELL--DRADTIVIPGWRGPDA-PVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGRRATTHWRYAERLQ  141 (322)
T ss_pred             eCCCCcccc--CCCCEEEECCCCcccc-cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCCeeeecHhhHHHHH
Confidence            999999864  5899999999976543 4589999999999999999999999999999999999999999999999998


Q ss_pred             H-CCCeEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHcccc-ccc-ccceee
Q 027708          154 A-AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI-TGS-DKRILF  207 (220)
Q Consensus       154 ~-~g~~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~-a~~-~~~~~~  207 (220)
                      + +|...+..+.  .++.|||++||+|+.+++++++++|++..+.. +.+ +..+++
T Consensus       142 ~~~p~~~~~~~~--~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~ll~  196 (322)
T PRK09393        142 ARYPAIRVDPDV--LYVDEGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRLVV  196 (322)
T ss_pred             HHCCCCEEeCCc--eEEecCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHhCc
Confidence            7 5766555442  58899999999999999999999999776654 333 444443

>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C

Probab=100.00  E-value=1.1e-33  Score=216.63  Aligned_cols=158  Identities=25%  Similarity=0.352  Sum_probs=135.2

Q ss_pred             EecCCCCchhhHHHHHHHHhCC-------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708           14 LCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus        14 l~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      |+||||+..|++.+.|+|+.+|       +++.+++++++                 ++.+++|+.+.++..+++.  .+
T Consensus         1 Ll~~gf~~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~-----------------~v~~s~g~~i~~~~~~~~~--~~   61 (166)
T PF13278_consen    1 LLFPGFSLLELAGPLDVLRAANRLSGEPLFEVRLVSPTGG-----------------PVTSSSGLRIQPDGSLDDA--PD   61 (166)
T ss_dssp             EE-TTB-HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSC-----------------EEEBTTSEEEEESEETCCC--SC
T ss_pred             CCCCCCcHHHHHHHHHHHHhchhhcCCCCeEEEEEecCCC-----------------eeeecCCeEEEeccChhhc--cc
Confidence            6899999999999999999998       88888888765                 8999999999999999984  58


Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHC-CCeEecCCCC
Q 027708           87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GASWIEPETM  165 (220)
Q Consensus        87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~-g~~~~~~~~~  165 (220)
                      +|+||||||........++.+++||+++++++++|+++|+|+++|+++|+|+|+++|+||...+.+++. +...+..+. 
T Consensus        62 ~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~tt~~~~~~~l~~~~p~~~~~~~~-  140 (166)
T PF13278_consen   62 FDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEAGLLDGRRATTHWSLAEALRERFPNVNVVSDQ-  140 (166)
T ss_dssp             CSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHTTTTTTSEE---GGGHHHHHHCTTCEEE-TSS-
T ss_pred             CCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhhhccCcccccchHHHHHHHHHhCCCccccCCC-
Confidence            999999999884445678999999999999999999999999999999999999999999999999985 665544222 


Q ss_pred             ceEEEcCCEEeCCCCCCHHHHHHHHHH
Q 027708          166 AACVVDGNIITGATYEGHPEFIRLFLK  192 (220)
Q Consensus       166 ~~~v~dg~iiTs~g~~s~~~~~~~li~  192 (220)
                       .++.|||++||+|..+++|+++++||
T Consensus       141 -~~v~dg~i~Ta~g~~~~~dl~l~li~  166 (166)
T PF13278_consen  141 -LFVDDGNIITAGGPTAAIDLALYLIE  166 (166)
T ss_dssp             -SEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred             -EEEECCCeEEecHHHHHHHHHHHHhC
Confidence             49999999999999999999999996

...

>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=100.00  E-value=1.9e-33  Score=220.65  Aligned_cols=169  Identities=22%  Similarity=0.248  Sum_probs=145.2

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCC------------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcC
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFG------------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNAT   78 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag------------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~   78 (220)
                      |+|+++|||...+++.++|+|+.+|            +++.+++.+++                 ++.+++|+.+.+|..
T Consensus         1 i~ill~~gf~~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~-----------------~v~s~~g~~i~~d~~   63 (195)
T cd03138           1 VTLLAYPGALASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGG-----------------PVLLAGGILILPDAT   63 (195)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCC-----------------eeecCCCceeccccc
Confidence            6899999999999999999999754            56666665543                 888999999999998


Q ss_pred             cCCCCCCCccEEEEcCCCCc-c--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH-
Q 027708           79 FDEIDPTKYDGLVIPGGRAP-E--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-  154 (220)
Q Consensus        79 l~~~~~~~~D~liipGG~~~-~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~-  154 (220)
                      +++.  ++||+||||||.+. .  .+..++.+++||+++++++++|+++|+|+++|+++|+|+||++|+||...+.+++ 
T Consensus        64 ~~~~--~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~agll~g~~~t~~~~~~~~~~~~  141 (195)
T cd03138          64 LADV--PAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEAGLLDGRRATTHWWLAPQFRRR  141 (195)
T ss_pred             cccc--CCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHccCcCCCeeeehHhhHHHHHHH
Confidence            8764  58999999998654 2  3567899999999999999999999999999999999999999999999999987 


Q ss_pred             CCC-eEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc-cccc
Q 027708          155 AGA-SWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT-ITGS  201 (220)
Q Consensus       155 ~g~-~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~-~a~~  201 (220)
                      ++. .+.+..   .++.||++|||+|+.+++++++++|+++.|+ .+++
T Consensus       142 ~p~~~~~~~~---~~v~dg~~~T~~g~~~~~d~al~li~~~~G~~~a~~  187 (195)
T cd03138         142 FPKVRLDPDR---VVVTDGNLITAGGAMAWADLALHLIERLAGPELAQL  187 (195)
T ss_pred             CCCceeccCc---EEEeCCCEEEcccHHHHHHHHHHHHHHHhCHHHHHH
Confidence            554 444433   4899999999999999999999999987766 4444

A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus

Probab=100.00  E-value=4e-33  Score=214.31  Aligned_cols=163  Identities=27%  Similarity=0.427  Sum_probs=140.7

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhC-CCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      |+|+++|+|++.|++.++++|+++ ++++.+++++++                 ++++++|+.+.++.++++.+.++||+
T Consensus         1 ~~v~~~~~f~~~e~~~~~~~l~~~~~~~~~~~s~~~~-----------------~v~ss~g~~i~~~~~~~~~~~~~~D~   63 (170)
T cd03140           1 IAVFLTDEFADWEGAYLAALLNSYEGFEVRTVSPTGE-----------------PVTSIGGLRVVPDYSLDDLPPEDYDL   63 (170)
T ss_pred             CEEEeccchhhhHHHHHHHHhcccCCcEEEEEeCCCC-----------------eeEecCCeEEccccchhHCCHhHccE
Confidence            689999999999999999999997 799999998775                 89999999999999999876568999


Q ss_pred             EEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCC-CHHHHHHC--CCeEecCCCCc
Q 027708           90 LVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPP-VKPVLIAA--GASWIEPETMA  166 (220)
Q Consensus        90 liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~-~~~~l~~~--g~~~~~~~~~~  166 (220)
                      |+||||..... ..++.+.+||+++++++++|+++|+|+++|+++|+|+||++|+||. ..+.+++.  +..+....   
T Consensus        64 l~I~Gg~~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~~~~---  139 (170)
T cd03140          64 LILPGGDSWDN-PEAPDLAGLVRQALKQGKPVAAICGATLALARAGLLNNRKHTSNSLDFLKAHAPYYGGAEYYDEP---  139 (170)
T ss_pred             EEEcCCccccc-CCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHCCCcCCCcccCChHHHHHHhccccCcccccccC---
Confidence            99999976443 4688999999999999999999999999999999999999999985 45555442  44443333   


Q ss_pred             eEEEcCCEEeCCCCCCHHHHHHHHHHHHc
Q 027708          167 ACVVDGNIITGATYEGHPEFIRLFLKALG  195 (220)
Q Consensus       167 ~~v~dg~iiTs~g~~s~~~~~~~li~~l~  195 (220)
                      .+++|||+|||+|. ++.||++++|++++
T Consensus       140 ~~v~dg~iiT~~g~-a~~d~al~~i~~l~  167 (170)
T cd03140         140 QAVSDGNLITANGT-APVEFAAEILRALD  167 (170)
T ss_pred             cEEEcCCEEECCCc-CHHHHHHHHHHHcC
Confidence            39999999999875 68999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.

>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]

Probab=100.00  E-value=6.9e-33  Score=229.11  Aligned_cols=185  Identities=16%  Similarity=0.232  Sum_probs=151.4

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +.+|+++++++|....+..+++.|+.+|..    +...    ...|.+.+.++.  +|.+++|+.+.+|..+++..  .+
T Consensus        10 ~~~~~~ll~p~f~l~~fa~~ve~lr~An~~----~~~~----~~~w~~~s~~g~--~V~ss~G~~i~~d~~~~~~~--~~   77 (328)
T COG4977          10 PQRFGFLLLPNFSLMAFASAVEPLRAANRL----AGRS----LYVWSIVSADGG--PVRSSSGLSIAPDGGLEAAP--PI   77 (328)
T ss_pred             ceEEEEEEeCCCchhhhhhhHHHHHHhhhh----cccc----ccceEEeecCCC--CcccCCCceEecCCcccccC--cc
Confidence            467999999999999999999999998731    1100    001333333333  89999999999999999864  59


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH-CCCeEecCCCCc
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWIEPETMA  166 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~-~g~~~~~~~~~~  166 (220)
                      |+++++||..+......+++.+||++.+++|..|+++|+|+++||++||||||+||+||...+.|++ +|...+..+   
T Consensus        78 ~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~aGLLdGrrattHW~~~~~f~e~FP~v~~~~~---  154 (328)
T COG4977          78 DILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEAGLLDGRRATTHWEHAEDFQERFPDVRVTDR---  154 (328)
T ss_pred             eEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHhcccCCCCeeeccccHHHHHHhCCCCCCCCc---
Confidence            9999999987765444489999999999999999999999999999999999999999999999988 687664444   


Q ss_pred             eEEEcCCEEeCCCCCCHHHHHHHHHHH-Hccccccc-ccceee
Q 027708          167 ACVVDGNIITGATYEGHPEFIRLFLKA-LGGTITGS-DKRILF  207 (220)
Q Consensus       167 ~~v~dg~iiTs~g~~s~~~~~~~li~~-l~~~~a~~-~~~~~~  207 (220)
                      ++++||++|||+|.++++|++++||++ ++.+.+.+ ++..++
T Consensus       155 lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~lv~  197 (328)
T COG4977         155 LFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQLVV  197 (328)
T ss_pred             eEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHhhh
Confidence            699999999999999999999999975 55556666 444444

>PRK11574 oxidative-stress-resistance chaperone; Provisional

Probab=100.00  E-value=2.4e-32  Score=214.57  Aligned_cols=187  Identities=22%  Similarity=0.364  Sum_probs=152.0

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +|||+|+++|||++.|+..|+++|+++|+++++++.+++..              .++.+++|+.+.++..+++++.++|
T Consensus         2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~~~~~~--------------~~v~ss~G~~v~~d~~l~~~~~~~~   67 (196)
T PRK11574          2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGN--------------LEITCSRGVKLLADAPLVEVADGDF   67 (196)
T ss_pred             CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEccCCCC--------------ceEEcCCCCEEeCCCCHHHCCCCCC
Confidence            47999999999999999999999999999999998754210              1688999999999999988766689


Q ss_pred             cEEEEcCCCC-cccccCChHHHHHHHHHHhCCCeEEEEehHHHH-HHhCcccCCceEecCCCCHHHHHHCC-CeEecCCC
Q 027708           88 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI-LAAADVVKGRKCTAYPPVKPVLIAAG-ASWIEPET  164 (220)
Q Consensus        88 D~liipGG~~-~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~-La~aglL~g~~~T~~~~~~~~l~~~g-~~~~~~~~  164 (220)
                      |+|+||||.. ...+..++.+.+||++++++|++|++||+|+++ |+.+|+|+|+++|.++.+.+.   +| ..+.++. 
T Consensus        68 D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~---~p~~~~~~~~-  143 (196)
T PRK11574         68 DVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDK---IPAEQWQDKR-  143 (196)
T ss_pred             CEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHh---cccCcccCCC-
Confidence            9999999974 344567889999999999999999999999985 677999999999988776543   33 3444443 


Q ss_pred             CceEEEcC--CEEeCCCCCCHHHHHHHHHHHHccc-cccc-ccceeeecCCchhh
Q 027708          165 MAACVVDG--NIITGATYEGHPEFIRLFLKALGGT-ITGS-DKRILFLCGVSFCF  215 (220)
Q Consensus       165 ~~~~v~dg--~iiTs~g~~s~~~~~~~li~~l~~~-~a~~-~~~~~~~~~~~~~~  215 (220)
                         +++|+  |+|||+|++++.|+++++|+++.|. .+.+ ++.+++...+..||
T Consensus       144 ---~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~~~a~~va~~~~~~~~~~~~~  195 (196)
T PRK11574        144 ---VVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVASQLVMAAGIYNYY  195 (196)
T ss_pred             ---EEEeCCccEEeCCCcchHHHHHHHHHHHhcCHHHHHHHHhhhccCccccccc
Confidence               66675  9999999999999999999988777 4555 55555555555544

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=99.98  E-value=8.6e-32  Score=207.66  Aligned_cols=173  Identities=39%  Similarity=0.629  Sum_probs=157.7

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ++++.|+..++.++.|+..|.++|++.|.+|.++++..+.                ++.++.|..+.+|..+.+.....|
T Consensus         5 ~~~vlil~~~g~Ee~E~ivp~dVLrr~Gi~Vt~ag~~~~~----------------~vkcs~~v~~~~d~~l~D~~~~~y   68 (247)
T KOG2764|consen    5 KKAVLILCADGMEEYEFIVPIDVLRRGGIDVTVAGPNKKE----------------GVKCSRGVHILPDNALFDVVDSKY   68 (247)
T ss_pred             cccEEEEccCCcceeEEEEeHHHHHhcCceEEEecCCCCc----------------ccccccceEecccccchhhccccc
Confidence            4689999999999999999999999999999999987653                778888888999988877766899


Q ss_pred             cEEEEcCC-CCcccccCChHHHHHHHHHHhCCCeEEEEehHH-HHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCC
Q 027708           88 DGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM  165 (220)
Q Consensus        88 D~liipGG-~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~-~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~  165 (220)
                      |+++|||| +++..+...+.+.+.+++|.+.|++|++||+|+ .+|+..|++.|+++|+||...+.+.+-|..|+++.  
T Consensus        69 DviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~--  146 (247)
T KOG2764|consen   69 DVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPR--  146 (247)
T ss_pred             cEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCC--
Confidence            99999999 788888899999999999999999999999999 66777778889999999999999988888888886  


Q ss_pred             ceEEEcCCEEeCCCCCCHHHHHHHHHHHHcccccc
Q 027708          166 AACVVDGNIITGATYEGHPEFIRLFLKALGGTITG  200 (220)
Q Consensus       166 ~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a~  200 (220)
                        ++.|||++||+|+..+.+|++.|+|+|+|++..
T Consensus       147 --vv~dG~liTSrGpgT~~eFal~lvEqL~GKeka  179 (247)
T KOG2764|consen  147 --VVKDGNLITSRGPGTAFEFALKLVEQLGGKEKA  179 (247)
T ss_pred             --eEEeCcEEeccCCCchHHHHHHHHHHhcCchhh
Confidence              899999999999999999999999999999654

>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein

Probab=99.97  E-value=6e-31  Score=210.53  Aligned_cols=178  Identities=23%  Similarity=0.315  Sum_probs=140.9

Q ss_pred             CCCCchhhHHHHHHHHhCCCeEEEEcCCCCC-CCCCCcccccCCCccccc----ccccCcccccCcCcCCCCCCCccEEE
Q 027708           17 DYMEDYEAMVPFQALLAFGVSVDAACPGKKS-GDVCPTAVHQSTGHQQTY----SETRGHNFALNATFDEIDPTKYDGLV   91 (220)
Q Consensus        17 ~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~-~~~~~~~~~~~~~~~~~v----~~~~g~~i~~~~~l~~~~~~~~D~li   91 (220)
                      .|+...|+..|+++|+++|++|+++|++++. .++..+...........+    ..+.+..+.++..+++++..+||+||
T Consensus        20 tG~~~~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~   99 (231)
T cd03147          20 TGVFFSEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFF   99 (231)
T ss_pred             cccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEE
Confidence            4888999999999999999999999997642 222111111111110112    23455677888899999888999999


Q ss_pred             EcCCCCc-ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC-------cccCCceEecCCCC---------------
Q 027708           92 IPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYPPV---------------  148 (220)
Q Consensus        92 ipGG~~~-~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a-------glL~g~~~T~~~~~---------------  148 (220)
                      ||||+++ ..+.+++.++++|++++++||+|++||+|+.+|+.+       ++++||++|+|+..               
T Consensus       100 iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~  179 (231)
T cd03147         100 VAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRN  179 (231)
T ss_pred             ECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccC
Confidence            9999875 447899999999999999999999999999999987       99999999999865               


Q ss_pred             ----HHHHHHCCCeEecCC--CCceEEEcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708          149 ----KPVLIAAGASWIEPE--TMAACVVDGNIITGATYEGHPEFIRLFLKAL  194 (220)
Q Consensus       149 ----~~~l~~~g~~~~~~~--~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l  194 (220)
                          ++.+++.|++|++.+  -+..+++|||+||++++.++.++++.+++.|
T Consensus       180 ~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l  231 (231)
T cd03147         180 LESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL  231 (231)
T ss_pred             CccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence                344566788988642  1234889999999999999999999999875

Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.

>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein

Probab=99.97  E-value=6.4e-31  Score=209.87  Aligned_cols=178  Identities=28%  Similarity=0.467  Sum_probs=141.4

Q ss_pred             CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCccccc---ccccCcccccCcCcCCCCCCCccEEEEc
Q 027708           17 DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTY---SETRGHNFALNATFDEIDPTKYDGLVIP   93 (220)
Q Consensus        17 ~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v---~~~~g~~i~~~~~l~~~~~~~~D~liip   93 (220)
                      +|+++.|+..|+++|+++|++|+++++++++.....+.+..........   ..+.+..+.++..+++++..+||+|+||
T Consensus        18 ~G~~~~E~~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ip   97 (221)
T cd03141          18 TGLWLEELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIFIP   97 (221)
T ss_pred             CccCHHHHHHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEEEC
Confidence            7999999999999999999999999997753111111111110000000   1245667889999999988899999999


Q ss_pred             CCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc------ccCCceEecCCCCH---------------HH
Q 027708           94 GGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPPVK---------------PV  151 (220)
Q Consensus        94 GG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag------lL~g~~~T~~~~~~---------------~~  151 (220)
                      ||.++. .+..++.+++||+++++++|+|++||+|+++|+++|      +|+||++|+||...               +.
T Consensus        98 GG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~~~~~~~~~~~~~~  177 (221)
T cd03141          98 GGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAAGLKKVVPFLLEDE  177 (221)
T ss_pred             CCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhcCccCcCCcCHHHH
Confidence            998653 467899999999999999999999999999999999      79999999998754               34


Q ss_pred             HHHCCCeEecCCC-CceEEEcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708          152 LIAAGASWIEPET-MAACVVDGNIITGATYEGHPEFIRLFLKAL  194 (220)
Q Consensus       152 l~~~g~~~~~~~~-~~~~v~dg~iiTs~g~~s~~~~~~~li~~l  194 (220)
                      +++.|++|.+..+ +..+|+|+|+||++|+.++.+|++++|+.|
T Consensus       178 l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l  221 (221)
T cd03141         178 LKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL  221 (221)
T ss_pred             HHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence            6777888886431 235899999999999999999999999864

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different

>PRK04155 chaperone protein HchA; Provisional

Probab=99.97  E-value=1.4e-30  Score=213.67  Aligned_cols=188  Identities=18%  Similarity=0.272  Sum_probs=146.0

Q ss_pred             CCCeEEEEec--------------CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCccccccc---cc
Q 027708            7 GKRSVLLLCG--------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSE---TR   69 (220)
Q Consensus         7 ~~~kI~il~~--------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~---~~   69 (220)
                      .+|||+|++.              .|+++.|+..|+++|+++|++|+++|+++++.....|+...   .+..+..   ..
T Consensus        48 ~~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~---~d~~v~~~~~~~  124 (287)
T PRK04155         48 GGKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSGNPVKFEYWAMPH---EDEAVMGFYEKY  124 (287)
T ss_pred             CCCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccc---cchhHHHHHHHh
Confidence            4679999986              48889999999999999999999999977532222233211   1111211   22


Q ss_pred             CcccccCcCcCCC----C--CCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc------c
Q 027708           70 GHNFALNATFDEI----D--PTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------V  136 (220)
Q Consensus        70 g~~i~~~~~l~~~----~--~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag------l  136 (220)
                      +..+..+..++++    .  ..+||+||||||+++ ..+..++.+.++|+++++++|+|++||+|+++|..+|      +
T Consensus       125 ~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a~~~~g~~l  204 (287)
T PRK04155        125 KSKFKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAAGVDHGDNP  204 (287)
T ss_pred             hhhccCceeHHHhhhhhcCCcccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCcCCCcc
Confidence            3334444444333    2  569999999999875 4588999999999999999999999999999999999      9


Q ss_pred             cCCceEecCCCC-------------------HHHHHHCCCeEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc
Q 027708          137 VKGRKCTAYPPV-------------------KPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT  197 (220)
Q Consensus       137 L~g~~~T~~~~~-------------------~~~l~~~g~~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~  197 (220)
                      ++||++|+|+..                   ++.|++.|+.+++++....+|+|||+||++|+.++.+|++.+++.|..+
T Consensus       205 l~GkkvT~fp~~~e~~~~~~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll~~  284 (287)
T PRK04155        205 LNGYSICAFPDALDKQTPEIGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELLAA  284 (287)
T ss_pred             cCCCEEeeCCCHHHhhccccccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHHHH
Confidence            999999998865                   4567778999998632335999999999999999999999999987654

>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]

Probab=99.97  E-value=2.7e-29  Score=196.06  Aligned_cols=176  Identities=40%  Similarity=0.707  Sum_probs=152.4

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccC-cccccCcCcCCCCCCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG-HNFALNATFDEIDPTK   86 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~i~~~~~l~~~~~~~   86 (220)
                      ++||+|++++||+..|+..|+++|+.+|+.+.++++..+.               ..+.++.| ..+.++..++++++.+
T Consensus         2 ~~~i~i~~~~g~e~~E~~~p~~~l~~ag~~v~~~~~~~~~---------------~~~~~~~g~~~~~~~~~~~~~~~~~   66 (188)
T COG0693           2 MKKIAILLADGFEDLELIVPYDVLRRAGFEVDVASPEGKG---------------KSVTSKRGGLVVADDKAFDDADAAD   66 (188)
T ss_pred             CceeEEEecCcceehhHhHHHHHHHHCCCeEEEEecCCCc---------------ceeecccCcceEecccccccCCHhH
Confidence            4799999999999999999999999999999999987630               03444444 5666777888877779


Q ss_pred             ccEEEEcCC-CCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc-ccCCceEecCCCCHHHHHH----CCCeEe
Q 027708           87 YDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCTAYPPVKPVLIA----AGASWI  160 (220)
Q Consensus        87 ~D~liipGG-~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag-lL~g~~~T~~~~~~~~l~~----~g~~~~  160 (220)
                      ||+|+|||| +++..+..++.+++|++++++++|+|++||+|+.+|+++| +++||++|+++..++....    .|++|+
T Consensus        67 ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~v  146 (188)
T COG0693          67 YDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYV  146 (188)
T ss_pred             CCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEe
Confidence            999999999 7887777779999999999999999999999999999999 9999999999999988877    689999


Q ss_pred             cCCC-CceEEEcCC-EEeCCCCCCHHHHHHHHHHHHcccc
Q 027708          161 EPET-MAACVVDGN-IITGATYEGHPEFIRLFLKALGGTI  198 (220)
Q Consensus       161 ~~~~-~~~~v~dg~-iiTs~g~~s~~~~~~~li~~l~~~~  198 (220)
                      +... ...++.||+ ++|+.++.++.+++..+++.+.+..
T Consensus       147 d~~~~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~  186 (188)
T COG0693         147 DAPLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE  186 (188)
T ss_pred             ccccCcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence            8831 012899999 9999999999999999999987753

>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31)

Probab=99.97  E-value=2e-29  Score=201.89  Aligned_cols=177  Identities=17%  Similarity=0.244  Sum_probs=140.1

Q ss_pred             ecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccc---cccCcccccCcCcCCC------CCC
Q 027708           15 CGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYS---ETRGHNFALNATFDEI------DPT   85 (220)
Q Consensus        15 ~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~---~~~g~~i~~~~~l~~~------~~~   85 (220)
                      +..|+++.|+..|+++|+++|++|+++|++++......++.   .+.+..+.   ...+..+..+..++++      +..
T Consensus        19 ~~tG~~~~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~---~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~   95 (232)
T cd03148          19 FSTGNHPVEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAM---PHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDS   95 (232)
T ss_pred             cCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCcCccCcccc---ccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChh
Confidence            46899999999999999999999999999775211001111   11110111   1244557777788776      356


Q ss_pred             CccEEEEcCCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcc------cCCceEecCCCCHH--------
Q 027708           86 KYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV------VKGRKCTAYPPVKP--------  150 (220)
Q Consensus        86 ~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~agl------L~g~~~T~~~~~~~--------  150 (220)
                      +||+||+|||+++. +++.++.+.+++++++++||+|++||+|+.+|..+++      ++||++|+|+..++        
T Consensus        96 dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~eE~~~~~~~~  175 (232)
T cd03148          96 EYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDSLDEGANIEIG  175 (232)
T ss_pred             hceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCHHHHhhhhccc
Confidence            89999999998764 5899999999999999999999999999999999998      99999999987654        


Q ss_pred             ------------HHHHCCCeEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708          151 ------------VLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKAL  194 (220)
Q Consensus       151 ------------~l~~~g~~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l  194 (220)
                                  .+++.|++|...+-...+|+||++||++++.|+..++..+|+.+
T Consensus       176 ~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~  231 (232)
T cd03148         176 YMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEM  231 (232)
T ss_pred             cccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHh
Confidence                        45566888887732345999999999999999999999999865

Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.

>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity

Probab=99.96  E-value=1.6e-28  Score=184.42  Aligned_cols=130  Identities=39%  Similarity=0.725  Sum_probs=116.5

Q ss_pred             ccccccC---cccccCcCcCCCCCCCccEEEEcCCCC-cccccCC-hHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccC
Q 027708           64 TYSETRG---HNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMN-DSVIDLVRKFSNSGKTIASICHGQLILAAADVVK  138 (220)
Q Consensus        64 ~v~~~~g---~~i~~~~~l~~~~~~~~D~liipGG~~-~~~~~~~-~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~  138 (220)
                      .+.++.|   ..+.++..+++++..+||+||||||.+ +..+..+ +.++++++++++++|+|++||+|+.+|+++|+|+
T Consensus        12 ~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~gll~   91 (147)
T PF01965_consen   12 EVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAAGLLK   91 (147)
T ss_dssp             EEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHTTTTT
T ss_pred             eEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhccCccC
Confidence            7888888   999999999999988999999999987 5667645 9999999999999999999999999999999999


Q ss_pred             CceEecCCCCHHHHHHCCCeEecCCCCceEEEcC-CEEeCCCCCCHHHHHHHHHHHHc
Q 027708          139 GRKCTAYPPVKPVLIAAGASWIEPETMAACVVDG-NIITGATYEGHPEFIRLFLKALG  195 (220)
Q Consensus       139 g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~v~dg-~iiTs~g~~s~~~~~~~li~~l~  195 (220)
                      |+++|+|+..++.++..|..|++.+.  .+++|+ |+||++|+.++.+|++.+++.|+
T Consensus        92 g~~~T~~~~~~~~~~~~g~~~~~~~~--~~vvD~~nlIT~~~~~~~~~fa~~ive~L~  147 (147)
T PF01965_consen   92 GKKVTSYPNDEEDLENAGANYVDQDD--PVVVDGGNLITGRGPGSAIEFALAIVEALG  147 (147)
T ss_dssp             TSEEC-SGGGHHHHHHTTTEEBSCSS--SEEEETTTEEEESSGGGHHHHHHHHHHHHT
T ss_pred             CceeecCccHHHHHHHCCCEEEecCC--CeEEECCeEEECCChhhHHHHHHHHHHHcC
Confidence            99999999999988889999998432  388999 99999999999999999999875

Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....

>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional

Probab=99.95  E-value=1.4e-26  Score=183.51  Aligned_cols=166  Identities=26%  Similarity=0.323  Sum_probs=128.5

Q ss_pred             CeEEEEec-----CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccC-------
Q 027708            9 RSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALN-------   76 (220)
Q Consensus         9 ~kI~il~~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~-------   76 (220)
                      +||+|++.     +|+++.|+..|+++|+++|++|+++|++++....  +. + ..+.  .+..+.++.+..+       
T Consensus         2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~--~~-~-~~~~--~~~~~~~~~~~~~~~~~~~~   75 (217)
T PRK11780          2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHV--IN-H-LTGE--EMGETRNVLVESARIARGEI   75 (217)
T ss_pred             CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCCCcccc--cc-C-cccc--ccccccceeeehhhhhccCC
Confidence            58999998     9999999999999999999999999997642100  00 0 0010  2333334333332       


Q ss_pred             cCcCCCCCCCccEEEEcCCCCcc-----------cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecC
Q 027708           77 ATFDEIDPTKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAY  145 (220)
Q Consensus        77 ~~l~~~~~~~~D~liipGG~~~~-----------~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~  145 (220)
                      ..++++++.+||+||||||+++.           .++.++.+++++++|+++||+|++||+|+++|+.+.. +||++|++
T Consensus        76 ~~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~-~gr~~T~~  154 (217)
T PRK11780         76 KDLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG-AGVKLTIG  154 (217)
T ss_pred             CchhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc-cCcEEEec
Confidence            57788888899999999998642           2355899999999999999999999999999988632 89999999


Q ss_pred             --CCCHHHHHHCCCeEecCCCCceEEEc--CCEEeCCCCCC
Q 027708          146 --PPVKPVLIAAGASWIEPETMAACVVD--GNIITGATYEG  182 (220)
Q Consensus       146 --~~~~~~l~~~g~~~~~~~~~~~~v~d--g~iiTs~g~~s  182 (220)
                        +.....+++.|++|++.+.. -+|+|  +|+|||.....
T Consensus       155 ~~~~~~~~~~~aGa~~vd~~~~-~vvvD~~~~lvt~~~~~~  194 (217)
T PRK11780        155 NDEDTAAAIEKMGGEHVDCPVD-DIVVDEENKVVTTPAYML  194 (217)
T ss_pred             CChhhHHHHHHCCCEEEcCCCC-eEEEECCCCEEeCCcccC
Confidence              88889999999999987432 25666  78999997543

>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1

Probab=99.94  E-value=1.4e-25  Score=176.70  Aligned_cols=159  Identities=25%  Similarity=0.330  Sum_probs=123.1

Q ss_pred             cCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccC-------cCcCCCCCCCcc
Q 027708           16 GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALN-------ATFDEIDPTKYD   88 (220)
Q Consensus        16 ~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~-------~~l~~~~~~~~D   88 (220)
                      ++||++.|+..|+++|+++|++|+++|++++...   +..... +.  .+..+.++.+.++       ..+++++..+||
T Consensus        11 ~dg~E~~El~~p~~~L~raG~~V~~aS~~gg~~~---~d~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyD   84 (213)
T cd03133          11 YDGSEIHEAVLTLLALDRAGAEVQCFAPDIEQMH---VVNHLT-GE--AEGESRNVLVESARIARGNIKDLAKLKAADFD   84 (213)
T ss_pred             CCCccHHHHHHHHHHHHHCCCEEEEEeCCCCccC---cccccc-cc--ccccccceeeehhhhhhcCCCchHHCCHhHCC
Confidence            5899999999999999999999999999765211   100111 00  2333445544444       678888778999


Q ss_pred             EEEEcCCCCc-ccc----------cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCC--CCHHHHHHC
Q 027708           89 GLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP--PVKPVLIAA  155 (220)
Q Consensus        89 ~liipGG~~~-~~~----------~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~--~~~~~l~~~  155 (220)
                      +||||||+++ ..+          +.++.+++++++++++||+|++||+|+.+|++++. +||++|+|+  ..++.+++.
T Consensus        85 alviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~~~~~l~~a  163 (213)
T cd03133          85 ALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG-EGVEVTIGNDAGTAAAIEKM  163 (213)
T ss_pred             EEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc-cCCeEEccCCHHHHHHHHHC
Confidence            9999999864 222          24889999999999999999999999999999766 999999999  888889999


Q ss_pred             CCeEecCCCCceEEEc--CCEEeCCCCCC
Q 027708          156 GASWIEPETMAACVVD--GNIITGATYEG  182 (220)
Q Consensus       156 g~~~~~~~~~~~~v~d--g~iiTs~g~~s  182 (220)
                      |++|++.+.+ .+++|  ||+|||+....
T Consensus       164 Ga~~~d~~~~-~vvvd~dg~lITs~~~~~  191 (213)
T cd03133         164 GAEHVNCPVE-EIVVDEKNKVVTTPAYML  191 (213)
T ss_pred             CCEEEeCCCC-eEEEECCCCEEeCccccC
Confidence            9999976332 24544  79999998754

Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.

>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases

Probab=99.91  E-value=2.3e-23  Score=155.45  Aligned_cols=112  Identities=25%  Similarity=0.376  Sum_probs=103.0

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|++++||+..|+..+.++|+.+|+++.++|++++                 +++++.|..+.++.++++.+..+||
T Consensus         2 ~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~-----------------~v~s~~g~~i~~~~~l~~~~~~~~D   64 (142)
T cd03132           2 RKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLG-----------------GVVDSDGKTLEVDQTYAGAPSVLFD   64 (142)
T ss_pred             CEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcC-----------------ceecCCCcEEecceeecCCChhhcC
Confidence            68999999999999999999999999999999999875                 7889999999999999987666899


Q ss_pred             EEEEcCCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCccc
Q 027708           89 GLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV  137 (220)
Q Consensus        89 ~liipGG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL  137 (220)
                      +|+||||.+.. .+..++.+.+||+++++++++|+++|+|+++|+++|+|
T Consensus        65 ~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~aGll  114 (142)
T cd03132          65 AVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAAGIP  114 (142)
T ss_pred             EEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHcCCC
Confidence            99999997643 34678999999999999999999999999999999997

Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C

>PRK11249 katE hydroperoxidase II; Provisional

Probab=99.75  E-value=7.4e-18  Score=152.61  Aligned_cols=114  Identities=23%  Similarity=0.276  Sum_probs=105.6

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +|||+||+++|++..|+..+.++|..+|..+.+++++++                 +|.++.|..+.++.++++.++..|
T Consensus       597 gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G-----------------~V~~s~G~~I~aD~t~~~~~Sv~F  659 (752)
T PRK11249        597 GRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMG-----------------EVTADDGTVLPIAATFAGAPSLTF  659 (752)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-----------------eEECCCCCEEecceeeccCCccCC
Confidence            689999999999999999999999999999999999775                 788999999999999999877789


Q ss_pred             cEEEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccC
Q 027708           88 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVK  138 (220)
Q Consensus        88 D~liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~  138 (220)
                      |+|+||||. ++..+..++.+++||+++++++|+|+++|+|+.+|+++||.+
T Consensus       660 DAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaAGL~~  711 (752)
T PRK11249        660 DAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAALKLPD  711 (752)
T ss_pred             CEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhcCCCC
Confidence            999999996 455577899999999999999999999999999999999855

>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase

Probab=99.42  E-value=2.1e-12  Score=104.34  Aligned_cols=129  Identities=20%  Similarity=0.277  Sum_probs=88.3

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL   90 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l   90 (220)
                      |+|+.++|..-  -....++|+.+|+++.+++....                  +.   +          ..+..+||.|
T Consensus         1 v~vl~~pG~n~--~~~~~~al~~aG~~v~~v~~~~~------------------~~---~----------~~~l~~~d~l   47 (238)
T cd01740           1 VAVLRFPGSNC--DRDMAYAFELAGFEAEDVWHNDL------------------LA---G----------RKDLDDYDGV   47 (238)
T ss_pred             CEEEEcCCcCC--HHHHHHHHHHcCCCEEEEeccCC------------------cc---c----------cCCHhhCCEE
Confidence            58999999862  23467889999999888765320                  00   0          1123479999


Q ss_pred             EEcCCCCc-cccc-----CChH-HHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCC
Q 027708           91 VIPGGRAP-EYLA-----MNDS-VIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPE  163 (220)
Q Consensus        91 iipGG~~~-~~~~-----~~~~-l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~  163 (220)
                      +||||... +.+.     .... +.++|+++.+++++|++||.|.++|+++|+|.|+. +.++..+...+..+ .|++..
T Consensus        48 iipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~-~~~~~~~~~~~~~~-~~v~~~  125 (238)
T cd01740          48 VLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGAL-IRNKGLKFICRWQN-RFVTLR  125 (238)
T ss_pred             EECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCcccc-ccCCCCceeccccC-ceEEEE
Confidence            99999642 2221     1223 88999999999999999999999999999999976 66555442222111 344432


Q ss_pred             CCceEEEcCCEEeCC
Q 027708          164 TMAACVVDGNIITGA  178 (220)
Q Consensus       164 ~~~~~v~dg~iiTs~  178 (220)
                          ++.+++++|+.
T Consensus       126 ----v~~~~si~t~~  136 (238)
T cd01740         126 ----VENNDSPFTKG  136 (238)
T ss_pred             ----EcCCCCceecC
Confidence                55677788876

Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.41  E-value=2.5e-12  Score=102.48  Aligned_cols=93  Identities=24%  Similarity=0.382  Sum_probs=73.0

Q ss_pred             eEEEEecCCCC-chhhHHHHHHHH-hCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708           10 SVLLLCGDYME-DYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus        10 kI~il~~~g~~-~~e~~~~~~~l~-~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ||+|+.++|.. +.|+   ..+|+ .+|+++..++.+.                                  .+  .++|
T Consensus         2 ~v~Vl~~~G~n~~~d~---~~a~~~~~G~~~~~v~~~~----------------------------------~~--l~~~   42 (219)
T PRK03619          2 KVAVIVFPGSNCDRDM---ARALRDLLGAEPEYVWHKE----------------------------------TD--LDGV   42 (219)
T ss_pred             EEEEEecCCcChHHHH---HHHHHhcCCCeEEEEecCc----------------------------------CC--CCCC
Confidence            89999999987 3444   66887 7898876664321                                  11  2479


Q ss_pred             cEEEEcCCCCcc------cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCce
Q 027708           88 DGLVIPGGRAPE------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK  141 (220)
Q Consensus        88 D~liipGG~~~~------~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~  141 (220)
                      |+|+||||.+..      ....++.+.+||+++++++++|++||+|.++|+++|||+|+-
T Consensus        43 D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l  102 (219)
T PRK03619         43 DAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGAL  102 (219)
T ss_pred             CEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeE
Confidence            999999996421      123457899999999999999999999999999999999953

>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.37  E-value=5.2e-12  Score=93.09  Aligned_cols=164  Identities=19%  Similarity=0.254  Sum_probs=115.0

Q ss_pred             CeEEEEe-----cCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCc-----ccccccccCcccccCcC
Q 027708            9 RSVLLLC-----GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-----QQTYSETRGHNFALNAT   78 (220)
Q Consensus         9 ~kI~il~-----~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-----~~~v~~~~g~~i~~~~~   78 (220)
                      |||++++     |||.+..|-...+-.+.+.|.++..+.|+....+.    ++...+.     ++....+..+..---..
T Consensus         2 Kkv~ViLSGCGV~DGaEIHEsVltllai~r~GA~~~cFAP~~~Q~hV----iNHlTGE~m~EtRNVLvEsARIaRG~i~~   77 (217)
T COG3155           2 KKVGVILSGCGVYDGAEIHESVLTLLAISRSGAQAVCFAPDKQQVHV----INHLTGEAMPETRNVLVESARIARGEIRP   77 (217)
T ss_pred             ceeEEEeecCcccchHHHHHHHHHHHHHHhcCceeEEecCCchhhhh----hhhccccccchhhhHHHHHHHHhhccccc
Confidence            6999997     68999999999999999999999999887643221    1122211     22233333332222234


Q ss_pred             cCCCCCCCccEEEEcCCCCccc-c----------cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC-cccCCceEe--c
Q 027708           79 FDEIDPTKYDGLVIPGGRAPEY-L----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCT--A  144 (220)
Q Consensus        79 l~~~~~~~~D~liipGG~~~~~-~----------~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a-glL~g~~~T--~  144 (220)
                      +.+.++++||++++|||+++.. +          .-++++.++.+.+++.|||++-+|.++.+|.+- |.  +.+.|  .
T Consensus        78 l~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~--~~~~TIGn  155 (217)
T COG3155          78 LAQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGF--PLRLTIGN  155 (217)
T ss_pred             hhhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCC--ceeEEecC
Confidence            5666778999999999998532 2          247899999999999999999999999998753 22  22333  3


Q ss_pred             CCCCHHHHHHCCCeEecCCCCceEEE-cCCEEeCC
Q 027708          145 YPPVKPVLIAAGASWIEPETMAACVV-DGNIITGA  178 (220)
Q Consensus       145 ~~~~~~~l~~~g~~~~~~~~~~~~v~-dg~iiTs~  178 (220)
                      .....+.+++.|+..++.+.+..++. +.+++|.-
T Consensus       156 D~dTa~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP  190 (217)
T COG3155         156 DIDTAEALEEMGAEHVPCPVDDIVVDEDNKVVTTP  190 (217)
T ss_pred             CccHHHHHHHhCcccCCCCccceeecCCCceecCh
Confidence            55667888899998888877666664 56677743

>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=99.35  E-value=9.7e-12  Score=101.26  Aligned_cols=98  Identities=22%  Similarity=0.350  Sum_probs=71.9

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|++++|++...  .+.++|+.+|+++.+++....                            .+ ...  ...+||
T Consensus         4 ~kvaVl~~pG~n~d~--e~~~Al~~aG~~v~~v~~~~~----------------------------~~-~~~--~l~~~D   50 (261)
T PRK01175          4 IRVAVLRMEGTNCED--ETVKAFRRLGVEPEYVHINDL----------------------------AA-ERK--SVSDYD   50 (261)
T ss_pred             CEEEEEeCCCCCCHH--HHHHHHHHCCCcEEEEeeccc----------------------------cc-ccc--chhhCC
Confidence            589999999997332  447899999998888754210                            00 001  234799


Q ss_pred             EEEEcCCCCc-ccccCC--------hHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCC
Q 027708           89 GLVIPGGRAP-EYLAMN--------DSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG  139 (220)
Q Consensus        89 ~liipGG~~~-~~~~~~--------~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g  139 (220)
                      +|+||||.+. +.+...        +.+.+.|+++.+++|+|.+||.|.++|+++|+|.|
T Consensus        51 gLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg  110 (261)
T PRK01175         51 CLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPG  110 (261)
T ss_pred             EEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCC
Confidence            9999999642 222211        22447889999999999999999999999999988

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=99.25  E-value=1.2e-10  Score=93.52  Aligned_cols=92  Identities=26%  Similarity=0.423  Sum_probs=71.3

Q ss_pred             eEEEEecCCCCc-hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708           10 SVLLLCGDYMED-YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus        10 kI~il~~~g~~~-~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      ||+|+.++|.+. .|.   ...|+.+|..+.++....                                  .+  .+++|
T Consensus         2 ~v~Vl~~~G~n~~~~~---~~al~~~G~~~~~i~~~~----------------------------------~~--l~~~d   42 (227)
T TIGR01737         2 KVAVIRFPGTNCDRDT---VYALRLLGVDAEIVWYED----------------------------------GS--LPDYD   42 (227)
T ss_pred             eEEEEeCCCcCcHHHH---HHHHHHCCCeEEEEecCC----------------------------------CC--CCCCC
Confidence            899999998863 455   478888998877763211                                  01  23799


Q ss_pred             EEEEcCCCCcc------cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCc
Q 027708           89 GLVIPGGRAPE------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  140 (220)
Q Consensus        89 ~liipGG~~~~------~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~  140 (220)
                      +|+||||....      .+..+..+.++|+++.+++++|.+||.|.++|+++|+|+|.
T Consensus        43 ~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~  100 (227)
T TIGR01737        43 GVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGA  100 (227)
T ss_pred             EEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCc
Confidence            99999996421      12335678899999999999999999999999999999984

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.24  E-value=4.2e-11  Score=93.53  Aligned_cols=93  Identities=30%  Similarity=0.471  Sum_probs=71.8

Q ss_pred             CCeEEEEecCCCC-chhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC-
Q 027708            8 KRSVLLLCGDYME-DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT-   85 (220)
Q Consensus         8 ~~kI~il~~~g~~-~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~-   85 (220)
                      ++||+|+.++|.+ +.|.   ...|+.+|+++..+.-+.                                    .... 
T Consensus         2 ~~kvaVi~fpGtN~d~d~---~~A~~~aG~~~~~V~~~d------------------------------------~~~~~   42 (231)
T COG0047           2 RPKVAVLRFPGTNCDYDM---AAAFERAGFEAEDVWHSD------------------------------------LLLGR   42 (231)
T ss_pred             CceEEEEEcCCcCchHHH---HHHHHHcCCCceEEEeee------------------------------------cccCC
Confidence            3699999999987 3444   446668888776664321                                    1112 


Q ss_pred             CccEEEEcCCCCccc-c-----cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCC
Q 027708           86 KYDGLVIPGGRAPEY-L-----AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKG  139 (220)
Q Consensus        86 ~~D~liipGG~~~~~-~-----~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g  139 (220)
                      +||+|++|||.+..+ +     ..-..+.+-++++.++|+++.+||+|-++|.++|||.|
T Consensus        43 ~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPG  102 (231)
T COG0047          43 DFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPG  102 (231)
T ss_pred             CccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCc
Confidence            699999999986422 2     23468899999999999999999999999999999999

>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=99.03  E-value=3.8e-09  Score=73.48  Aligned_cols=91  Identities=33%  Similarity=0.578  Sum_probs=74.5

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL   90 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l   90 (220)
                      |++++++++...++..+.+.|+.+++++++++.....                 ..+             .....+||+|
T Consensus         1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------~~~-------------~~~~~~~d~l   50 (115)
T cd01653           1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGP-----------------VES-------------DVDLDDYDGL   50 (115)
T ss_pred             CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCc-----------------eec-------------cCChhccCEE
Confidence            5789999999999999999999999999999876531                 111             1124589999


Q ss_pred             EEcCCCCccc-ccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708           91 VIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL  131 (220)
Q Consensus        91 iipGG~~~~~-~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L  131 (220)
                      ++|||..... ...++.++++++++..++++++++|.|++++
T Consensus        51 ii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l   92 (115)
T cd01653          51 ILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL   92 (115)
T ss_pred             EECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence            9999876433 2247899999999999999999999999998

Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende

>PRK13526 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.98  E-value=1.6e-09  Score=82.91  Aligned_cols=89  Identities=22%  Similarity=0.325  Sum_probs=66.3

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      .||+||...|....    -...|++.|.++.++...                                   ++  ..++|
T Consensus         3 ~~igVLalqG~~~E----h~~al~~lG~~v~~v~~~-----------------------------------~~--l~~~D   41 (179)
T PRK13526          3 QKVGVLAIQGGYQK----HADMFKSLGVEVKLVKFN-----------------------------------ND--FDSID   41 (179)
T ss_pred             cEEEEEECCccHHH----HHHHHHHcCCcEEEECCH-----------------------------------HH--HhCCC
Confidence            58999999995433    667788888776555321                                   11  23799


Q ss_pred             EEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh----CcccCC
Q 027708           89 GLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA----ADVVKG  139 (220)
Q Consensus        89 ~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~----aglL~g  139 (220)
                      .|++|||.+..  .+..+..+.+.|+++.+ +|++++||.|+.+|++    .|+++|
T Consensus        42 ~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~~s~~Lg~idg   97 (179)
T PRK13526         42 RLVIPGGESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSKGEGYLNLLDL   97 (179)
T ss_pred             EEEECCChHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHccCCCCCCccE
Confidence            99999996543  44556679999999885 7899999999999998    355555

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=98.97  E-value=1.8e-09  Score=83.81  Aligned_cols=84  Identities=26%  Similarity=0.354  Sum_probs=66.2

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      ||+|++.+|.    +....+.|++.|.++.++++.                                   ++  .+++|+
T Consensus         1 ~igvl~~qg~----~~e~~~~l~~~g~~~~~v~~~-----------------------------------~~--l~~~d~   39 (184)
T TIGR03800         1 KIGVLALQGA----VREHARALEALGVEGVEVKRP-----------------------------------EQ--LDEIDG   39 (184)
T ss_pred             CEEEEEccCC----HHHHHHHHHHCCCEEEEECCh-----------------------------------HH--hccCCE
Confidence            6999999984    344668999999988777541                                   11  237999


Q ss_pred             EEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           90 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        90 liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |+||||.+..  .+..+..+.++|+++.+++++|.+||.|..+|++.
T Consensus        40 liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~   86 (184)
T TIGR03800        40 LIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKE   86 (184)
T ss_pred             EEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhh
Confidence            9999996532  23345678899999999999999999999999988

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.92  E-value=4.5e-09  Score=82.74  Aligned_cols=90  Identities=20%  Similarity=0.300  Sum_probs=71.5

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      ||+|++.++.....+..+...|+..|.++++.....                                 .++  ..+||+
T Consensus         2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~---------------------------------~~~--l~~~d~   46 (200)
T PRK13527          2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR---------------------------------PGD--LPDCDA   46 (200)
T ss_pred             EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC---------------------------------hHH--hccCCE
Confidence            899999999999999999999999998766654311                                 012  237999


Q ss_pred             EEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           90 LVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        90 liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |++|||....  .+..+..+.++|+++.+++++|.+||.|..+|+.+
T Consensus        47 iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~   93 (200)
T PRK13527         47 LIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKE   93 (200)
T ss_pred             EEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            9999996532  12244568999999999999999999999999987

>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A

Probab=98.85  E-value=3.8e-09  Score=85.94  Aligned_cols=99  Identities=26%  Similarity=0.357  Sum_probs=67.2

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|+.++|.+  --.....+|+.+|+++..+..+.                  ..        .     .+....+||
T Consensus         2 pkV~Vl~~pGtN--ce~e~~~A~~~aG~~~~~v~~~d------------------l~--------~-----~~~~l~~~~   48 (259)
T PF13507_consen    2 PKVAVLRFPGTN--CERETAAAFENAGFEPEIVHIND------------------LL--------S-----GESDLDDFD   48 (259)
T ss_dssp             -EEEEEE-TTEE--EHHHHHHHHHCTT-EEEEEECCH------------------HH--------T-----TS--GCC-S
T ss_pred             CEEEEEECCCCC--CHHHHHHHHHHcCCCceEEEEEe------------------cc--------c-----ccCchhhCc
Confidence            599999999987  33344568899999988775421                  00        0     011335899


Q ss_pred             EEEEcCCCCccc-c----------cCChHHHHHHHHHHhC-CCeEEEEehHHHHHHhCcccCCc
Q 027708           89 GLVIPGGRAPEY-L----------AMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGR  140 (220)
Q Consensus        89 ~liipGG~~~~~-~----------~~~~~l~~~l~~~~~~-g~~i~aic~G~~~La~aglL~g~  140 (220)
                      +|++|||.+..+ +          ..++.+.+.|++|.++ |++|.+||+|.++|.++|||.|.
T Consensus        49 ~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~  112 (259)
T PF13507_consen   49 GLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGG  112 (259)
T ss_dssp             EEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT-
T ss_pred             EEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCc
Confidence            999999975321 1          2346678899999999 99999999999999999999983

>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain

Probab=98.81  E-value=3.5e-08  Score=65.52  Aligned_cols=91  Identities=32%  Similarity=0.569  Sum_probs=71.3

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL   90 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l   90 (220)
                      |+++.+++....++..+.+.|+..++.+.+++.....                 ...             .....++|++
T Consensus         1 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-------------~~~~~~~~~l   50 (92)
T cd03128           1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGP-----------------VES-------------DVDLDDYDGL   50 (92)
T ss_pred             CEEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCc-----------------ccc-------------cCCcccCCEE
Confidence            4678888888889999999999999999888776431                 111             1234589999


Q ss_pred             EEcCCCCccc-ccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708           91 VIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLIL  131 (220)
Q Consensus        91 iipGG~~~~~-~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L  131 (220)
                      ++|||..... ...+....+|++++++++++++++|.|+.++
T Consensus        51 ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~   92 (92)
T cd03128          51 ILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL   92 (92)
T ss_pred             EECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence            9999976433 2247899999999999999999999998753

Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.75  E-value=4.8e-08  Score=76.22  Aligned_cols=85  Identities=24%  Similarity=0.374  Sum_probs=63.7

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|+...|-.    ......|+.+|.++..+++.                                   ++  .++||
T Consensus         2 m~~~i~~~~g~~----~~~~~~l~~~g~~~~~~~~~-----------------------------------~~--l~~~d   40 (189)
T PRK13525          2 MKIGVLALQGAV----REHLAALEALGAEAVEVRRP-----------------------------------ED--LDEID   40 (189)
T ss_pred             CEEEEEEcccCH----HHHHHHHHHCCCEEEEeCCh-----------------------------------hH--hccCC
Confidence            589999998743    33456788888877666421                                   11  24799


Q ss_pred             EEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .|++|||....  .+..+..+.++++++.+++++|.+||.|..+|+.+
T Consensus        41 giii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~   88 (189)
T PRK13525         41 GLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKE   88 (189)
T ss_pred             EEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhh
Confidence            99999996532  12345567899999999999999999999999974

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=98.59  E-value=1.6e-07  Score=75.83  Aligned_cols=85  Identities=26%  Similarity=0.389  Sum_probs=64.8

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+||...|-    +......|+..|.++.+++..                                   +++  .++|
T Consensus         2 m~igVLa~qG~----~~e~~~aL~~lG~ev~~v~~~-----------------------------------~~L--~~~D   40 (248)
T PLN02832          2 MAIGVLALQGS----FNEHIAALRRLGVEAVEVRKP-----------------------------------EQL--EGVS   40 (248)
T ss_pred             cEEEEEeCCCc----hHHHHHHHHHCCCcEEEeCCH-----------------------------------HHh--ccCC
Confidence            58999999994    444468888888877666431                                   122  3789


Q ss_pred             EEEEcCCCCc--ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~--~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||+|||.+.  ..+.....+.+.|+++.++|+|+.++|.|..+|++.
T Consensus        41 gLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~   88 (248)
T PLN02832         41 GLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAER   88 (248)
T ss_pred             EEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            9999998642  224444468899999988999999999999999875

>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase

Probab=98.53  E-value=6e-07  Score=70.56  Aligned_cols=77  Identities=30%  Similarity=0.419  Sum_probs=58.4

Q ss_pred             hHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCc---cc
Q 027708           24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP---EY  100 (220)
Q Consensus        24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~---~~  100 (220)
                      +..-.+.|+++|.++.++++..+                                 +++  +++|+||+|||...   ..
T Consensus        13 y~e~~~~l~~~G~~v~~~s~~~~---------------------------------~~l--~~~D~lilPGG~~~~~~~~   57 (198)
T cd03130          13 YPENLELLEAAGAELVPFSPLKD---------------------------------EEL--PDADGLYLGGGYPELFAEE   57 (198)
T ss_pred             cHHHHHHHHHCCCEEEEECCCCC---------------------------------CCC--CCCCEEEECCCchHHHHHH
Confidence            33446778888988888765311                                 122  25999999998643   34


Q ss_pred             ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708          101 LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  135 (220)
Q Consensus       101 ~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag  135 (220)
                      +.++..+.+.|+++.++|++|.+||.|.++|++.-
T Consensus        58 L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~   92 (198)
T cd03130          58 LSANQSMRESIRAFAESGGPIYAECGGLMYLGESL   92 (198)
T ss_pred             HHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence            55667899999999999999999999999998753

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.

>PRK08250 glutamine amidotransferase; Provisional

Probab=98.51  E-value=1.7e-06  Score=69.85  Aligned_cols=92  Identities=16%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      ||.|+....++..+.  ..+.++.+|+++.+.....+                        -.      +.. +..+||+
T Consensus         2 ~i~vi~h~~~e~~g~--~~~~~~~~g~~~~~~~~~~g------------------------~~------~p~-~~~~~d~   48 (235)
T PRK08250          2 RVHFIIHESFEAPGA--YLKWAENRGYDISYSRVYAG------------------------EA------LPE-NADGFDL   48 (235)
T ss_pred             eEEEEecCCCCCchH--HHHHHHHCCCeEEEEEccCC------------------------CC------CCC-CccccCE
Confidence            799999998885555  46677888988777543211                        00      110 2247999


Q ss_pred             EEEcCCCCc-cc-ccCC-----hHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           90 LVIPGGRAP-EY-LAMN-----DSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        90 liipGG~~~-~~-~~~~-----~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |||.||+.. .. ....     ....+||+++.+.+++|.+||.|..+|+.+
T Consensus        49 vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  100 (235)
T PRK08250         49 LIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEA  100 (235)
T ss_pred             EEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHH
Confidence            999999642 21 1112     467899999999999999999999999986

>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ)

Probab=98.46  E-value=6.5e-07  Score=70.13  Aligned_cols=86  Identities=15%  Similarity=0.189  Sum_probs=64.0

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL   90 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l   90 (220)
                      |+|+.|+...  .+..+...+...|.++.++++..                                   +  +.++|+|
T Consensus         1 ~~~~~y~~~g--N~~~l~~~~~~~G~~~~~~~~~~-----------------------------------~--~~~~d~l   41 (194)
T cd01750           1 IAVIRYPDIS--NFTDLDPLAREPGVDVRYVEVPE-----------------------------------G--LGDADLI   41 (194)
T ss_pred             CEeecCCCcc--CHHHHHHHHhcCCceEEEEeCCC-----------------------------------C--CCCCCEE
Confidence            4677776544  55666778888888888876531                                   1  2478999


Q ss_pred             EEcCCCCcc-ccc--CChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708           91 VIPGGRAPE-YLA--MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  135 (220)
Q Consensus        91 iipGG~~~~-~~~--~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag  135 (220)
                      ++|||.... .+.  ++..+.+.|+++.++|++|.+||.|..+|++.-
T Consensus        42 ilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~   89 (194)
T cd01750          42 ILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYI   89 (194)
T ss_pred             EECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhc
Confidence            999997432 121  245688999999999999999999999998764

Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.46  E-value=6.7e-07  Score=70.38  Aligned_cols=85  Identities=24%  Similarity=0.281  Sum_probs=63.8

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      ||+|+=+..-   .+....+.|+.+|.++.+++..                                   .++  .+||+
T Consensus         2 ~~~v~~~~~~---~~~~~~~~l~~~G~~~~~~~~~-----------------------------------~~~--~~~d~   41 (200)
T PRK13143          2 MIVIIDYGVG---NLRSVSKALERAGAEVVITSDP-----------------------------------EEI--LDADG   41 (200)
T ss_pred             eEEEEECCCc---cHHHHHHHHHHCCCeEEEECCH-----------------------------------HHH--ccCCE
Confidence            7888877643   4467788999999987776310                                   112  37999


Q ss_pred             EEEcCCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           90 LVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        90 liipGG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |++|||.... .+...+.+.++|+++.++++|+.+||.|..+|+++
T Consensus        42 iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~   87 (200)
T PRK13143         42 IVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFES   87 (200)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence            9999964322 23345678899999999999999999999999985

>PRK07053 glutamine amidotransferase; Provisional

Probab=98.45  E-value=3.5e-06  Score=67.87  Aligned_cols=94  Identities=22%  Similarity=0.175  Sum_probs=68.1

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ||+|.|+-....+  .+..+.+.|+..|..++++....+.                         .    ...+  ..+|
T Consensus         2 m~~ilviqh~~~e--~~g~i~~~L~~~g~~~~v~~~~~~~-------------------------~----~~~~--~~~~   48 (234)
T PRK07053          2 MKTAVAIRHVAFE--DLGSFEQVLGARGYRVRYVDVGVDD-------------------------L----ETLD--ALEP   48 (234)
T ss_pred             CceEEEEECCCCC--CChHHHHHHHHCCCeEEEEecCCCc-------------------------c----CCCC--ccCC
Confidence            3688888766555  6667899999999988777543210                         0    0111  2369


Q ss_pred             cEEEEcCCCC-ccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~-~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.|||+||+. +..   ...-..+.++|+++.+.+++|.+||.|..+|+++
T Consensus        49 d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a   99 (234)
T PRK07053         49 DLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARA   99 (234)
T ss_pred             CEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            9999999863 221   1223578899999999999999999999999987

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=98.41  E-value=5.6e-07  Score=69.87  Aligned_cols=83  Identities=28%  Similarity=0.422  Sum_probs=62.5

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL   90 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l   90 (220)
                      |+|++.+|.....    .+.|+..|.++..+++..                                   +  ..++|.|
T Consensus         1 igvl~~qg~~~e~----~~~l~~~g~~v~~v~~~~-----------------------------------~--l~~~dgi   39 (183)
T cd01749           1 IGVLALQGDFREH----IRALERLGVEVIEVRTPE-----------------------------------D--LEGIDGL   39 (183)
T ss_pred             CEEEEecCCcHHH----HHHHHHCCCeEEEECCHH-----------------------------------H--hccCCEE
Confidence            6788888765432    288999998887775410                                   1  2379999


Q ss_pred             EEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           91 VIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        91 iipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |+|||....  ....+..+.++|+++.++++++.++|.|..+|+++
T Consensus        40 ii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~   85 (183)
T cd01749          40 IIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKE   85 (183)
T ss_pred             EECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            999986421  12344567899999999999999999999999875

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II

Probab=98.40  E-value=2.1e-06  Score=82.79  Aligned_cols=106  Identities=18%  Similarity=0.229  Sum_probs=74.5

Q ss_pred             CCeEEEEecCCCC-chhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCC--CC
Q 027708            8 KRSVLLLCGDYME-DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEI--DP   84 (220)
Q Consensus         8 ~~kI~il~~~g~~-~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~--~~   84 (220)
                      ++||+|+.++|.+ +.|..   .+|..+|+++..+..+.-.           ++   .+.          .+++++  ..
T Consensus       977 kpkvaIl~~pGtNce~d~a---~Af~~aG~~~~~v~~~dl~-----------~~---~i~----------~s~~~~~~~l 1029 (1239)
T TIGR01857       977 KPRVVIPVFPGTNSEYDSA---KAFEKEGAEVNLVIFRNLN-----------EE---ALV----------ESVETMVDEI 1029 (1239)
T ss_pred             CCeEEEEECCCCCCHHHHH---HHHHHcCCceEEEEEecCc-----------cc---ccc----------cchhhhhccc
Confidence            5799999999987 34444   4666799887666542100           00   000          011111  23


Q ss_pred             CCccEEEEcCCCCccc-----------ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCc
Q 027708           85 TKYDGLVIPGGRAPEY-----------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  140 (220)
Q Consensus        85 ~~~D~liipGG~~~~~-----------~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~  140 (220)
                      .+||+|++|||.+..+           +..++.+.+-+++|+++++++.+||+|-++|.+.|||.+.
T Consensus      1030 ~~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~ 1096 (1239)
T TIGR01857      1030 DKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYG 1096 (1239)
T ss_pred             ccCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCc
Confidence            5899999999975321           2456889999999999999999999999999999999863

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.

>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.34  E-value=3.7e-06  Score=81.70  Aligned_cols=101  Identities=18%  Similarity=0.265  Sum_probs=73.9

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      .+||+|+.++|.+-  -.....+|..+|+++..+..+.                   +.  .|          .....+|
T Consensus      1037 ~pkVaVl~~pGtN~--~~e~~~Af~~aGf~~~~V~~~d-------------------l~--~~----------~~~L~~~ 1083 (1307)
T PLN03206       1037 KPKVAIIREEGSNG--DREMAAAFYAAGFEPWDVTMSD-------------------LL--NG----------RISLDDF 1083 (1307)
T ss_pred             CCeEEEEECCCCCC--HHHHHHHHHHcCCceEEEEeee-------------------cc--cc----------cccccce
Confidence            47999999999882  2333457778998876654321                   00  00          1123479


Q ss_pred             cEEEEcCCCCcc-----------cccCChHHHHHHHHHH-hCCCeEEEEehHHHHHHhCcccCCce
Q 027708           88 DGLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAADVVKGRK  141 (220)
Q Consensus        88 D~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~g~~i~aic~G~~~La~aglL~g~~  141 (220)
                      +.|++|||.+..           .+..++.+.+.+++|+ +.++++.+||+|.++|.+.|||.|-+
T Consensus      1084 ~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~ 1149 (1307)
T PLN03206       1084 RGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQ 1149 (1307)
T ss_pred             eEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCc
Confidence            999999997421           2346788999999999 55999999999999999999998753

>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]

Probab=98.30  E-value=1.6e-06  Score=65.96  Aligned_cols=84  Identities=24%  Similarity=0.370  Sum_probs=62.0

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCC-CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFG-VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag-~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +||+||.+.|-    +..=.+.+++++ .++..+-.                                   .+++  ++.
T Consensus         1 m~IGVLalQG~----v~EH~~~l~~~~~~e~~~Vk~-----------------------------------~~dL--~~~   39 (194)
T COG0311           1 MKIGVLALQGA----VEEHLEALEKAGGAEVVEVKR-----------------------------------PEDL--EGV   39 (194)
T ss_pred             CeEEEEEeccc----HHHHHHHHHhhcCCceEEEcC-----------------------------------HHHh--ccC
Confidence            38999999994    444455666664 54433321                                   1232  479


Q ss_pred             cEEEEcCCCCc--ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           88 DGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        88 D~liipGG~~~--~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      |+||||||.+.  ..+...-.+.+-|+++..+|+|+.+.|+|..+|++
T Consensus        40 d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLak   87 (194)
T COG0311          40 DGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAK   87 (194)
T ss_pred             cEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhh
Confidence            99999999863  23556667889999999999999999999999996

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=98.28  E-value=3e-06  Score=67.14  Aligned_cols=94  Identities=17%  Similarity=0.223  Sum_probs=66.6

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|+-+..-   .+......|+..|.++.+++..                                   +++  .++|
T Consensus         2 ~~v~iid~~~G---N~~sl~~al~~~g~~v~vv~~~-----------------------------------~~l--~~~d   41 (210)
T CHL00188          2 MKIGIIDYSMG---NLHSVSRAIQQAGQQPCIINSE-----------------------------------SEL--AQVH   41 (210)
T ss_pred             cEEEEEEcCCc---cHHHHHHHHHHcCCcEEEEcCH-----------------------------------HHh--hhCC
Confidence            58999999833   4566677888889887776321                                   112  3689


Q ss_pred             EEEEcCCCCccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC---------cccCCceE
Q 027708           89 GLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRKC  142 (220)
Q Consensus        89 ~liipGG~~~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a---------glL~g~~~  142 (220)
                      .||+||+..+..   ...+..+.+.|+++.++++++.+||.|.++|++.         |+++|+-.
T Consensus        42 ~iIlPG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~  107 (210)
T CHL00188         42 ALVLPGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVK  107 (210)
T ss_pred             EEEECCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEE
Confidence            999999644321   1112346678888888999999999999999975         57777543

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=98.26  E-value=9.1e-06  Score=63.20  Aligned_cols=91  Identities=27%  Similarity=0.371  Sum_probs=63.2

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCC---CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      ||+|+..+....  .....+.|++++   .++++......                             + ...+  ..+
T Consensus         1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~-----------------------------~-~~~~--~~~   46 (188)
T cd01741           1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAG-----------------------------E-LLPD--LDD   46 (188)
T ss_pred             CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCC-----------------------------C-CCCC--ccc
Confidence            477777765543  667778888877   45555433211                             0 0122  348


Q ss_pred             ccEEEEcCCCCcc-c--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           87 YDGLVIPGGRAPE-Y--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        87 ~D~liipGG~~~~-~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ||+|+++||.... .  ....+.+.++|+++.++++++.+||.|..+|+.+
T Consensus        47 ~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~   97 (188)
T cd01741          47 YDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARA   97 (188)
T ss_pred             CCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHH
Confidence            9999999997532 1  1223678999999999999999999999999876

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form

Probab=98.26  E-value=5.3e-06  Score=80.99  Aligned_cols=99  Identities=16%  Similarity=0.219  Sum_probs=73.0

Q ss_pred             CCeEEEEecCCCCc-hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708            8 KRSVLLLCGDYMED-YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus         8 ~~kI~il~~~g~~~-~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      ++||+|+.++|++- .|.   ..+|..+|+++..+..+.                           +..    ...+..+
T Consensus      1055 ~p~vail~~pG~N~~~e~---~~Af~~aGf~~~~v~~~d---------------------------l~~----~~~~l~~ 1100 (1310)
T TIGR01735      1055 RPKVAILREQGVNGDREM---AAAFDRAGFEAWDVHMSD---------------------------LLA----GRVHLDE 1100 (1310)
T ss_pred             CceEEEEECCCCCCHHHH---HHHHHHhCCCcEEEEEec---------------------------ccc----CCcchhh
Confidence            36999999999983 333   347778898766654321                           000    0112347


Q ss_pred             ccEEEEcCCCCcc-----------cccCChHHHHHHHHHH-hCCCeEEEEehHHHHHH-hCcccCCc
Q 027708           87 YDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILA-AADVVKGR  140 (220)
Q Consensus        87 ~D~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~g~~i~aic~G~~~La-~aglL~g~  140 (220)
                      |+.|++|||.+..           .+..++.+.+.+++|+ ++++++.+||+|.++|. ..|||.|.
T Consensus      1101 ~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~ 1167 (1310)
T TIGR01735      1101 FRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGT 1167 (1310)
T ss_pred             eeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCC
Confidence            9999999996421           1346788999999999 88999999999999999 99999874

This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.

>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional

Probab=98.25  E-value=7.8e-06  Score=79.94  Aligned_cols=99  Identities=15%  Similarity=0.232  Sum_probs=72.1

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ++||+|+.++|.+-  -.....+|..+|+++..+..+.                           +...    .....+|
T Consensus      1035 ~pkv~il~~pG~N~--~~e~~~Af~~aG~~~~~v~~~d---------------------------l~~~----~~~l~~~ 1081 (1290)
T PRK05297       1035 RPKVAILREQGVNS--HVEMAAAFDRAGFDAIDVHMSD---------------------------LLAG----RVTLEDF 1081 (1290)
T ss_pred             CCeEEEEECCCCCC--HHHHHHHHHHcCCCeEEEEeec---------------------------CcCC----CCChhhC
Confidence            46999999999882  2333457779999876664321                           0000    0123589


Q ss_pred             cEEEEcCCCCcc-----------cccCChHHHHHHHHHH-hCCCeEEEEehHHHHHHhCc-ccCC
Q 027708           88 DGLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAAD-VVKG  139 (220)
Q Consensus        88 D~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~g~~i~aic~G~~~La~ag-lL~g  139 (220)
                      +.|++|||.+..           .+..|+.+.+.+++|+ ++++++.+||+|.++|.+.| |+.|
T Consensus      1082 ~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~ 1146 (1290)
T PRK05297       1082 KGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPG 1146 (1290)
T ss_pred             cEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCC
Confidence            999999996421           1245788999999988 78999999999999999998 7765

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.23  E-value=9.2e-06  Score=71.67  Aligned_cols=90  Identities=22%  Similarity=0.247  Sum_probs=66.3

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      .+|+|.-.+-|+. -+..=.+.|+..|.++..+++-..                                 ++  .+++|
T Consensus       246 ~~iava~d~af~f-~y~e~~~~L~~~g~~~~~~~~~~~---------------------------------~~--l~~~D  289 (451)
T PRK01077        246 VRIAVARDAAFNF-YYPENLELLRAAGAELVFFSPLAD---------------------------------EA--LPDCD  289 (451)
T ss_pred             ceEEEEecCcccc-cHHHHHHHHHHCCCEEEEeCCcCC---------------------------------CC--CCCCC
Confidence            4888888774432 222334677788888877765211                                 11  23799


Q ss_pred             EEEEcCCCC---cccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~---~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +|++|||..   ...+..+..+.+.|+++.++|++|.++|.|..+|++.
T Consensus       290 ~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~  338 (451)
T PRK01077        290 GLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGES  338 (451)
T ss_pred             EEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            999999963   2345677889999999999999999999999999875

>PRK06490 glutamine amidotransferase; Provisional

Probab=98.23  E-value=1.9e-05  Score=63.84  Aligned_cols=94  Identities=24%  Similarity=0.191  Sum_probs=67.5

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ++||.||.-.+++  ....+.+.|+..|.++++..+..+                        - ..|    ++  ..+|
T Consensus         7 ~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~~~~~~------------------------~-~~p----~~--l~~~   53 (239)
T PRK06490          7 KRPVLIVLHQERS--TPGRVGQLLQERGYPLDIRRPRLG------------------------D-PLP----DT--LEDH   53 (239)
T ss_pred             CceEEEEecCCCC--CChHHHHHHHHCCCceEEEeccCC------------------------C-CCC----Cc--cccc
Confidence            4689988877766  555678899999998877654321                        0 001    12  2479


Q ss_pred             cEEEEcCCCCc-cc-ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~-~~-~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.+||.||+.. .. ..-...+.+||+++.+.++|+.+||-|..+|+.+
T Consensus        54 dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~a  102 (239)
T PRK06490         54 AGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARH  102 (239)
T ss_pred             CEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            99999998752 21 1112457899999999999999999999999987

>PHA03366 FGAM-synthase; Provisional

Probab=98.14  E-value=1.8e-05  Score=77.36  Aligned_cols=97  Identities=21%  Similarity=0.174  Sum_probs=72.9

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      .+||+|+.++|.+  .-.....+|..+|+++..+..+.                           +...    .. ..+|
T Consensus      1028 ~prVaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~d---------------------------L~~~----~~-l~~f 1073 (1304)
T PHA03366       1028 RHRVAVLLLPGCP--GPHALLAAFTNAGFDPYPVSIEE---------------------------LKDG----TF-LDEF 1073 (1304)
T ss_pred             CCeEEEEECCCCC--CHHHHHHHHHHcCCceEEEEeec---------------------------CCCC----Cc-cccc
Confidence            5799999999998  23334457778999877765421                           0010    11 3479


Q ss_pred             cEEEEcCCCCcc-----------cccCChHHHHHHHHHH-hCCCeEEEEeh-HHHHHHhCcccC
Q 027708           88 DGLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICH-GQLILAAADVVK  138 (220)
Q Consensus        88 D~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~g~~i~aic~-G~~~La~aglL~  138 (220)
                      +.|++|||.+..           .+..|+.+.+.+++|+ ++++.+.+||+ |.++|.+.|+|.
T Consensus      1074 ~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~ 1137 (1304)
T PHA03366       1074 SGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVG 1137 (1304)
T ss_pred             eEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCcc
Confidence            999999997632           1347889999999999 56999999999 999999999994

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=98.12  E-value=6.6e-06  Score=64.58  Aligned_cols=75  Identities=25%  Similarity=0.308  Sum_probs=55.9

Q ss_pred             hhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccc-
Q 027708           23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL-  101 (220)
Q Consensus        23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~-  101 (220)
                      .+......|+..|.++.+++..                                   .++  .++|.|||||+..+... 
T Consensus        10 ~~~~~~~~l~~~g~~v~v~~~~-----------------------------------~~l--~~~d~iiipG~~~~~~~~   52 (198)
T cd01748          10 NLRSVANALERLGAEVIITSDP-----------------------------------EEI--LSADKLILPGVGAFGDAM   52 (198)
T ss_pred             hHHHHHHHHHHCCCeEEEEcCh-----------------------------------HHh--ccCCEEEECCCCcHHHHH
Confidence            5666788999999887776421                                   012  36999999987443211 


Q ss_pred             --cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708          102 --AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus       102 --~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                        .....+.++++++.+++++|.+||.|..+|+.+
T Consensus        53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~   87 (198)
T cd01748          53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFES   87 (198)
T ss_pred             HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccc
Confidence              123457899999999999999999999999987

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=98.12  E-value=1.6e-05  Score=61.96  Aligned_cols=87  Identities=14%  Similarity=0.300  Sum_probs=60.0

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      |||+|+  |..+. .-....+.|++.|.++.++.....                               ..+++  .++|
T Consensus         2 ~~ilii--d~~ds-f~~~i~~~l~~~g~~~~v~~~~~~-------------------------------~~~~l--~~~d   45 (190)
T PRK06895          2 TKLLII--NNHDS-FTFNLVDLIRKLGVPMQVVNVEDL-------------------------------DLDEV--ENFS   45 (190)
T ss_pred             cEEEEE--eCCCc-hHHHHHHHHHHcCCcEEEEECCcc-------------------------------ChhHh--ccCC
Confidence            355555  43333 334478999999998887754210                               11222  3699


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .|||.||++...  ..+.+.++|++ .+.++|+.+||-|.++|+.+
T Consensus        46 ~iIi~gGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~   88 (190)
T PRK06895         46 HILISPGPDVPR--AYPQLFAMLER-YHQHKSILGVCLGHQTLCEF   88 (190)
T ss_pred             EEEECCCCCChH--HhhHHHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            999999876322  24567888886 67899999999999999877

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.11  E-value=7.3e-06  Score=64.71  Aligned_cols=84  Identities=20%  Similarity=0.281  Sum_probs=59.9

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL   90 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l   90 (220)
                      |+|+-+..   .....+.+.|+..|.+++++...                                   +++  .+||.|
T Consensus         2 i~~~d~~~---~~~~~i~~~l~~~G~~v~~~~~~-----------------------------------~~l--~~~d~i   41 (205)
T PRK13141          2 IAIIDYGM---GNLRSVEKALERLGAEAVITSDP-----------------------------------EEI--LAADGV   41 (205)
T ss_pred             EEEEEcCC---chHHHHHHHHHHCCCeEEEECCH-----------------------------------HHh--ccCCEE
Confidence            55555543   35577889999999887775320                                   122  369999


Q ss_pred             EEcCCCCccc-c--cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           91 VIPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        91 iipGG~~~~~-~--~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |||||..... .  ...+.+.++|+++.++++++.+||.|.++|++.
T Consensus        42 iipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~   88 (205)
T PRK13141         42 ILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLFES   88 (205)
T ss_pred             EECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhc
Confidence            9999743221 1  112357899999999999999999999999986

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.07  E-value=1.6e-05  Score=63.07  Aligned_cols=87  Identities=20%  Similarity=0.182  Sum_probs=56.4

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCC--eEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGV--SVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~--~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      +||+|+=|..-+   +......|++.|.  ++.+++.                                   .+++  .+
T Consensus         2 ~~~~iid~g~gn---~~s~~~al~~~g~~~~v~~~~~-----------------------------------~~~l--~~   41 (209)
T PRK13146          2 MTVAIIDYGSGN---LRSAAKALERAGAGADVVVTAD-----------------------------------PDAV--AA   41 (209)
T ss_pred             CeEEEEECCCCh---HHHHHHHHHHcCCCccEEEECC-----------------------------------HHHh--cC
Confidence            589988886544   4455678888887  3333221                                   1222  47


Q ss_pred             ccEEEEcCCCCccc----ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708           87 YDGLVIPGGRAPEY----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  135 (220)
Q Consensus        87 ~D~liipGG~~~~~----~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag  135 (220)
                      +|.|||||+.....    +........+++...+.++||.+||.|..+|++++
T Consensus        42 ~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~   94 (209)
T PRK13146         42 ADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERG   94 (209)
T ss_pred             CCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence            99999999754221    11122233445555578999999999999999983

>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase

Probab=98.06  E-value=2.8e-05  Score=75.75  Aligned_cols=98  Identities=16%  Similarity=0.125  Sum_probs=72.6

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      .+||+|+.++|.+  --.....+|..+|+++..+..+.                           +.....     .++|
T Consensus       929 ~p~VaIl~~pG~N--~~~e~~~Af~~aGf~~~~v~~~d---------------------------l~~~~~-----l~~f  974 (1202)
T TIGR01739       929 RHQVAVLLLPGQS--VPHGLLAALTNAGFDPRIVSITE---------------------------LKKTDF-----LDTF  974 (1202)
T ss_pred             CCeEEEEeCCCCC--CHHHHHHHHHHcCCceEEEEecc---------------------------CCCCCc-----hhhe
Confidence            4689999999998  33334457778999877765431                           000001     2379


Q ss_pred             cEEEEcCCCCcc-----------cccCChHHHHHHHHHH-hCCCeEEEEeh-HHHHHHhCcccCC
Q 027708           88 DGLVIPGGRAPE-----------YLAMNDSVIDLVRKFS-NSGKTIASICH-GQLILAAADVVKG  139 (220)
Q Consensus        88 D~liipGG~~~~-----------~~~~~~~l~~~l~~~~-~~g~~i~aic~-G~~~La~aglL~g  139 (220)
                      +.|++|||.+-.           .+..++.+.+.+++|+ +.++++.+||+ |.++|.+.|+|.+
T Consensus       975 ~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~ 1039 (1202)
T TIGR01739       975 SGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGY 1039 (1202)
T ss_pred             EEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcC
Confidence            999999997521           1346889999999999 55999999999 9999999999854

This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=98.03  E-value=2.2e-05  Score=60.58  Aligned_cols=48  Identities=33%  Similarity=0.488  Sum_probs=40.1

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+||.|+++||++..  .+.....++++++.++++||.+||.|..+|+.+
T Consensus        38 ~~~dgiil~GG~~~~--~~~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~   85 (178)
T cd01744          38 LDPDGIFLSNGPGDP--ALLDEAIKTVRKLLGKKIPIFGICLGHQLLALA   85 (178)
T ss_pred             cCCCEEEECCCCCCh--hHhHHHHHHHHHHHhCCCCEEEECHHHHHHHHH
Confidence            379999999997522  234678899999999999999999999999875

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>PRK09065 glutamine amidotransferase; Provisional

Probab=97.99  E-value=6.2e-05  Score=60.81  Aligned_cols=50  Identities=28%  Similarity=0.514  Sum_probs=40.3

Q ss_pred             CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+||.|||.||+...+  ..-...+.+||+++.++++||.+||.|..+|+.+
T Consensus        53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~a  104 (237)
T PRK09065         53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHA  104 (237)
T ss_pred             hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHH
Confidence            4799999999975321  1112567899999999999999999999999876

>PRK05665 amidotransferase; Provisional

Probab=97.97  E-value=0.00012  Score=59.23  Aligned_cols=50  Identities=20%  Similarity=0.468  Sum_probs=40.4

Q ss_pred             CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+||++||.||...-+  ..-...+.+||++.+++++++.+||-|..+|+.+
T Consensus        56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~A  107 (240)
T PRK05665         56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALL  107 (240)
T ss_pred             ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence            3799999999964222  1112578899999999999999999999999876

>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []

Probab=97.89  E-value=1.3e-05  Score=60.64  Aligned_cols=52  Identities=27%  Similarity=0.473  Sum_probs=44.6

Q ss_pred             CCCccEEEEcCCCCc---ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708           84 PTKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  135 (220)
Q Consensus        84 ~~~~D~liipGG~~~---~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag  135 (220)
                      ++++|+|++|||...   ..+.++..+.+.|+++.++|++|.++|.|-.+|.+.=
T Consensus         5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i   59 (158)
T PF07685_consen    5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI   59 (158)
T ss_pred             CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence            568999999999753   2356788899999999999999999999999998753

Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=97.85  E-value=6.4e-05  Score=58.51  Aligned_cols=77  Identities=19%  Similarity=0.330  Sum_probs=53.8

Q ss_pred             hhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCccccc
Q 027708           23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLA  102 (220)
Q Consensus        23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~~  102 (220)
                      -.......|+..|.++.++..+..                                .+++...++|.||+|||....+  
T Consensus        10 ~~~~l~~~l~~~g~~~~~~~~~~~--------------------------------~~~~~~~~~~glii~Gg~~~~~--   55 (188)
T TIGR00888        10 YTQLIARRLRELGVYSELVPNTTP--------------------------------LEEIREKNPKGIILSGGPSSVY--   55 (188)
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCCC--------------------------------HHHHhhcCCCEEEECCCCCCcC--
Confidence            445667888888988877643211                                1111112467999999975332  


Q ss_pred             CChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708          103 MNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus       103 ~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                       +.....|+++..+.++||.+||.|..+|+.+
T Consensus        56 -~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   86 (188)
T TIGR00888        56 -AENAPRADEKIFELGVPVLGICYGMQLMAKQ   86 (188)
T ss_pred             -cCCchHHHHHHHhCCCCEEEECHHHHHHHHh
Confidence             2234678888889999999999999999876

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]

Probab=97.84  E-value=2.6e-05  Score=59.85  Aligned_cols=61  Identities=30%  Similarity=0.489  Sum_probs=43.2

Q ss_pred             CccEEEEcCCCCc--ccccCChHHHHHHHHHHhCC-CeEEEEehHHHHHHhC------cccCCceEecCC
Q 027708           86 KYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA------DVVKGRKCTAYP  146 (220)
Q Consensus        86 ~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~g-~~i~aic~G~~~La~a------glL~g~~~T~~~  146 (220)
                      +.|.||||||.+.  ..+.....+.+-|+++.+.| +||.+.|+|..+|++.      ..|.+..+|+-.
T Consensus        33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~~q~~Lg~ldi~V~R  102 (188)
T PF01174_consen   33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEVEGQGQPLLGLLDITVRR  102 (188)
T ss_dssp             T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEECSSCCTSS--EEEEEET
T ss_pred             cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhhhhcccccccceeEEEEc
Confidence            6899999999763  23455668999999999998 9999999999999973      245555666543

The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=97.83  E-value=0.00011  Score=64.93  Aligned_cols=90  Identities=21%  Similarity=0.294  Sum_probs=65.7

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      .||+|.-.+-|+.. +..=.+.|+..|.++..+++-.+                                 +++  +++|
T Consensus       245 ~~Iava~d~afnFy-~~~~~~~L~~~g~~~~~~~~~~d---------------------------------~~l--~~~d  288 (449)
T TIGR00379       245 VRIAVAQDQAFNFY-YQDNLDALTHNAAELVPFSPLED---------------------------------TEL--PDVD  288 (449)
T ss_pred             cEEEEEechhhcee-HHHHHHHHHHCCCEEEEECCccC---------------------------------CCC--CCCC
Confidence            47888887655431 12334566677888887775321                                 122  3789


Q ss_pred             EEEEcCCCCc---ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~---~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +|+||||...   ..+..+..+.+.|+++.++|++|.++|.|-.+|++.
T Consensus       289 ~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~  337 (449)
T TIGR00379       289 AVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS  337 (449)
T ss_pred             EEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence            9999999742   235567889999999999999999999999999875

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.78  E-value=6.4e-05  Score=58.95  Aligned_cols=82  Identities=20%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      +|+|+=|..-+   +......|++.|.++.++...                                   +++  .++|.
T Consensus         2 ~i~iid~g~gn---~~s~~~~l~~~g~~~~~v~~~-----------------------------------~~~--~~~d~   41 (196)
T PRK13170          2 NVVIIDTGCAN---LSSVKFAIERLGYEPVVSRDP-----------------------------------DVI--LAADK   41 (196)
T ss_pred             eEEEEeCCCch---HHHHHHHHHHCCCeEEEECCH-----------------------------------HHh--CCCCE
Confidence            67777654433   444555888888877776321                                   122  35899


Q ss_pred             EEEcCCCCcccc---cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           90 LVIPGGRAPEYL---AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        90 liipGG~~~~~~---~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ||+||...+...   .....+.+++++   .++||.+||.|.++|+.+
T Consensus        42 iIlPG~G~~~~~~~~l~~~~l~~~i~~---~~~PilGIClG~Qll~~~   86 (196)
T PRK13170         42 LFLPGVGTAQAAMDQLRERELIDLIKA---CTQPVLGICLGMQLLGER   86 (196)
T ss_pred             EEECCCCchHHHHHHHHHcChHHHHHH---cCCCEEEECHHHHHHhhh
Confidence            999995433221   111234555554   489999999999999976

>PRK00784 cobyric acid synthase; Provisional

Probab=97.76  E-value=8.6e-05  Score=66.21  Aligned_cols=50  Identities=18%  Similarity=0.345  Sum_probs=40.8

Q ss_pred             CCccEEEEcCCCCcc---cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~---~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +++|.|++|||....   .+..+..+.+.|+++.++|++|.++|.|-.+|++.
T Consensus       289 ~~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~  341 (488)
T PRK00784        289 PDADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR  341 (488)
T ss_pred             ccCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence            379999999997432   13345568899999999999999999999999874

>PRK07567 glutamine amidotransferase; Provisional

Probab=97.76  E-value=0.00016  Score=58.58  Aligned_cols=50  Identities=16%  Similarity=0.222  Sum_probs=35.1

Q ss_pred             CCccEEEEcCCCCcc-cc--cCCh---HH----HHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPE-YL--AMND---SV----IDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~-~~--~~~~---~l----~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+||.|||.||.... .-  ...+   .+    .++++.....++||.+||.|.++|+.+
T Consensus        50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a  109 (242)
T PRK07567         50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHH  109 (242)
T ss_pred             hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHH
Confidence            479999999997422 11  1122   23    344555558999999999999999987

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=97.76  E-value=9.1e-05  Score=57.67  Aligned_cols=87  Identities=22%  Similarity=0.293  Sum_probs=57.3

Q ss_pred             EEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEE
Q 027708           13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVI   92 (220)
Q Consensus        13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~lii   92 (220)
                      ||+-|+++.... ...+.|+..|.++.++..+..                               +++++...+||.||+
T Consensus         2 il~idn~Dsft~-nl~~~l~~~g~~v~v~~~~~~-------------------------------~~~~~~~~~~d~iil   49 (187)
T PRK08007          2 ILLIDNYDSFTW-NLYQYFCELGADVLVKRNDAL-------------------------------TLADIDALKPQKIVI   49 (187)
T ss_pred             EEEEECCCccHH-HHHHHHHHCCCcEEEEeCCCC-------------------------------CHHHHHhcCCCEEEE
Confidence            556666653332 367788888988877754311                               111222236899999


Q ss_pred             cCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           93 PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        93 pGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||++...  +.....++++. +..++||.+||-|.++|+.+
T Consensus        50 s~GPg~p~--~~~~~~~~~~~-~~~~~PiLGIClG~Q~la~a   88 (187)
T PRK08007         50 SPGPCTPD--EAGISLDVIRH-YAGRLPILGVCLGHQAMAQA   88 (187)
T ss_pred             cCCCCChH--HCCccHHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            99986322  23345566665 56789999999999999876

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.75  E-value=7e-05  Score=58.85  Aligned_cols=49  Identities=16%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             CccEEEEcCCCCccc-c--cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEY-L--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~-~--~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ++|.||+||+..+.. .  .....+.++|+++.+.++||.+||.|..+|+.+
T Consensus        37 ~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~   88 (199)
T PRK13181         37 GADKVILPGVGAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFES   88 (199)
T ss_pred             cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhh
Confidence            699999999754321 1  112346788999999999999999999999986

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=97.75  E-value=0.00014  Score=57.80  Aligned_cols=48  Identities=23%  Similarity=0.561  Sum_probs=39.7

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ..||.|||.||++..  .+.....+|++++.++++||.+||.|.++|+.+
T Consensus        45 ~~~dgliisGGp~~~--~~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a   92 (214)
T PRK07765         45 AQFDGVLLSPGPGTP--ERAGASIDMVRACAAAGTPLLGVCLGHQAIGVA   92 (214)
T ss_pred             cCCCEEEECCCCCCh--hhcchHHHHHHHHHhCCCCEEEEccCHHHHHHH
Confidence            369999999997532  234556799999999999999999999999876

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=97.75  E-value=0.00011  Score=57.60  Aligned_cols=74  Identities=24%  Similarity=0.217  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCccc--
Q 027708           23 EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY--  100 (220)
Q Consensus        23 e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~--  100 (220)
                      .+......|+..|.+++++..+                                   ++  .+++|.||+||+.....  
T Consensus        10 n~~~l~~~l~~~g~~v~v~~~~-----------------------------------~~--l~~~d~lii~G~~~~~~~~   52 (196)
T TIGR01855        10 NLGSVKRALKRVGAEPVVVKDS-----------------------------------KE--AELADKLILPGVGAFGAAM   52 (196)
T ss_pred             HHHHHHHHHHHCCCcEEEEcCH-----------------------------------HH--hccCCEEEECCCCCHHHHH
Confidence            6778888999888887776421                                   01  23699999999543221  


Q ss_pred             --ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708          101 --LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus       101 --~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                        +.... ...+++++.+.+++|.++|.|.++|+.+
T Consensus        53 ~~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Qll~~~   87 (196)
T TIGR01855        53 ARLRENG-LDLFVELVVRLGKPVLGICLGMQLLFER   87 (196)
T ss_pred             HHHHHcC-cHHHHHHHHhCCCCEEEECHHHHHhhhc
Confidence              11112 3344477888999999999999999998

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=97.74  E-value=9.6e-05  Score=57.68  Aligned_cols=86  Identities=20%  Similarity=0.241  Sum_probs=56.2

Q ss_pred             EEecCCCCchhhH-HHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEE
Q 027708           13 LLCGDYMEDYEAM-VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLV   91 (220)
Q Consensus        13 il~~~g~~~~e~~-~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~li   91 (220)
                      ||+.|..+  +++ ...+.|+..|.++.++..+..                               .++++....+|.||
T Consensus         2 il~id~~d--sf~~nl~~~l~~~~~~~~v~~~~~~-------------------------------~~~~~~~~~~~~ii   48 (191)
T PRK06774          2 LLLIDNYD--SFTYNLYQYFCELGTEVMVKRNDEL-------------------------------QLTDIEQLAPSHLV   48 (191)
T ss_pred             EEEEECCC--chHHHHHHHHHHCCCcEEEEeCCCC-------------------------------CHHHHHhcCCCeEE
Confidence            45555554  333 367888889998888754321                               11222223689999


Q ss_pred             EcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           92 IPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        92 ipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +-||++...  +......+++. +++++||.+||.|.++|+.+
T Consensus        49 lsgGP~~~~--~~~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~   88 (191)
T PRK06774         49 ISPGPCTPN--EAGISLAVIRH-FADKLPILGVCLGHQALGQA   88 (191)
T ss_pred             EcCCCCChH--hCCCchHHHHH-hcCCCCEEEECHHHHHHHHH
Confidence            999985321  22334566654 56799999999999999887

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=97.74  E-value=0.00043  Score=54.33  Aligned_cols=50  Identities=32%  Similarity=0.508  Sum_probs=41.5

Q ss_pred             CCccEEEEcCCCCcccccC--ChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEYLAM--NDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~--~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .++|++||.||+..-+...  .+...+||++....+++|.+||.|.++||.+
T Consensus        44 ~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~   95 (198)
T COG0518          44 DSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKA   95 (198)
T ss_pred             cCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHH
Confidence            3569999999984322234  6889999999999999999999999999865

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=97.68  E-value=0.00012  Score=56.78  Aligned_cols=86  Identities=24%  Similarity=0.267  Sum_probs=62.4

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      ++|+|+=|.-=   .+......|+++|+++.+.+. .                                  +++  ...|
T Consensus         2 ~~i~IIDyg~G---NL~Sv~~Aler~G~~~~vs~d-~----------------------------------~~i--~~AD   41 (204)
T COG0118           2 MMVAIIDYGSG---NLRSVKKALERLGAEVVVSRD-P----------------------------------EEI--LKAD   41 (204)
T ss_pred             CEEEEEEcCcc---hHHHHHHHHHHcCCeeEEecC-H----------------------------------HHH--hhCC
Confidence            57888877643   566777788899987765432 1                                  122  3799


Q ss_pred             EEEEcCCCC---cccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~---~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||+||=..   +..-.+...+.+.|++....++|+.+||-|.++|.+.
T Consensus        42 ~liLPGVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~   90 (204)
T COG0118          42 KLILPGVGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLFER   90 (204)
T ss_pred             EEEecCCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhhhc
Confidence            999999322   1221234488999999999999999999999999765

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=97.67  E-value=0.0002  Score=55.84  Aligned_cols=46  Identities=20%  Similarity=0.279  Sum_probs=35.9

Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ++|.|||.||++...  +.....++++++ ++++||.+||.|.++|+.+
T Consensus        43 ~~d~iilsgGpg~p~--~~~~~~~~i~~~-~~~~PvLGIC~G~Qll~~~   88 (188)
T TIGR00566        43 LPLLIVISPGPCTPN--EAGISLEAIRHF-AGKLPILGVCLGHQAMGQA   88 (188)
T ss_pred             CCCEEEEcCCCCChh--hcchhHHHHHHh-ccCCCEEEECHHHHHHHHH
Confidence            589999999985321  233447888877 6789999999999999876

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.66  E-value=0.00028  Score=63.37  Aligned_cols=87  Identities=18%  Similarity=0.252  Sum_probs=61.1

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      .++|+|+=|..=   .+......|+..|+++.++.. .                                  ++  ..++
T Consensus         6 ~~~i~iiDyG~G---N~~sl~~al~~~G~~v~~v~~-~----------------------------------~~--l~~~   45 (538)
T PLN02617          6 DSEVTLLDYGAG---NVRSVRNAIRHLGFTIKDVQT-P----------------------------------ED--ILNA   45 (538)
T ss_pred             CCeEEEEECCCC---CHHHHHHHHHHCCCeEEEECC-h----------------------------------hh--hccC
Confidence            468887766543   445556788888888765532 0                                  12  2479


Q ss_pred             cEEEEcCCCCccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||+||+.....   ...+..+.+.|+++.+.++|+.+||.|.++|+++
T Consensus        46 D~lIlpG~gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~   95 (538)
T PLN02617         46 DRLIFPGVGAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFES   95 (538)
T ss_pred             CEEEECCCCCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhh
Confidence            9999999765322   1123347788999999999999999999999974

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=97.61  E-value=0.00037  Score=53.77  Aligned_cols=76  Identities=20%  Similarity=0.307  Sum_probs=49.1

Q ss_pred             hHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccccC
Q 027708           24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAM  103 (220)
Q Consensus        24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~~~  103 (220)
                      .......|+..|..+.++.....                                .++....++|.||+|||....+...
T Consensus        11 ~~~~~~~l~~~G~~~~~~~~~~~--------------------------------~~~~~~~~~dgvIl~Gg~~~~~~~~   58 (181)
T cd01742          11 THLIARRVRELGVYSEILPNTTP--------------------------------LEEIKLKNPKGIILSGGPSSVYEED   58 (181)
T ss_pred             HHHHHHHHHhcCceEEEecCCCC--------------------------------hhhhcccCCCEEEECCCcccccccc
Confidence            34467888888987777643210                                1111234799999999975322111


Q ss_pred             ChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708          104 NDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus       104 ~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+.+.   ++..+.++|+.+||.|.++|+.+
T Consensus        59 ~~~~~---~~~~~~~~PilGIC~G~Qll~~~   86 (181)
T cd01742          59 APRVD---PEIFELGVPVLGICYGMQLIAKA   86 (181)
T ss_pred             cchhh---HHHHhcCCCEEEEcHHHHHHHHh
Confidence            23333   44445699999999999999985

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK05670 anthranilate synthase component II; Provisional

Probab=97.54  E-value=0.00038  Score=54.23  Aligned_cols=87  Identities=20%  Similarity=0.240  Sum_probs=55.4

Q ss_pred             EEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEE
Q 027708           13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVI   92 (220)
Q Consensus        13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~lii   92 (220)
                      |++.|.. ..=.....+.|+..|.++.++......                            ...++.   .++|.||+
T Consensus         2 iliid~~-d~f~~~i~~~l~~~g~~~~v~~~~~~~----------------------------~~~~~~---~~~dglIl   49 (189)
T PRK05670          2 ILLIDNY-DSFTYNLVQYLGELGAEVVVYRNDEIT----------------------------LEEIEA---LNPDAIVL   49 (189)
T ss_pred             EEEEECC-CchHHHHHHHHHHCCCcEEEEECCCCC----------------------------HHHHHh---CCCCEEEE
Confidence            3444433 333455677888889988777543210                            001122   24899999


Q ss_pred             cCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           93 PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        93 pGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||++...  +.....+++++. ..++||.+||.|.++|+.+
T Consensus        50 sgGpg~~~--d~~~~~~~l~~~-~~~~PvLGIClG~Qlla~a   88 (189)
T PRK05670         50 SPGPGTPA--EAGISLELIREF-AGKVPILGVCLGHQAIGEA   88 (189)
T ss_pred             cCCCCChH--HcchHHHHHHHh-cCCCCEEEECHHHHHHHHH
Confidence            98875321  223456677764 5779999999999999876

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=97.54  E-value=0.00047  Score=58.98  Aligned_cols=87  Identities=24%  Similarity=0.283  Sum_probs=60.2

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+++=+ |+.    ......|.+.|..+.++..+.                                +++++...++|
T Consensus       178 ~~I~viD~-G~k----~nivr~L~~~G~~v~vvp~~~--------------------------------~~~~i~~~~~D  220 (360)
T PRK12564        178 YKVVAIDF-GVK----RNILRELAERGCRVTVVPATT--------------------------------TAEEILALNPD  220 (360)
T ss_pred             CEEEEEeC-CcH----HHHHHHHHHCCCEEEEEeCCC--------------------------------CHHHHHhcCCC
Confidence            46666554 332    356778888888887764321                                11122112699


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||++||++..  .+.+..+++++++.++++||.+||.|.++|+.+
T Consensus       221 GIvLSgGPgdp--~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a  264 (360)
T PRK12564        221 GVFLSNGPGDP--AALDYAIEMIRELLEKKIPIFGICLGHQLLALA  264 (360)
T ss_pred             EEEEeCCCCCh--HHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            99999997532  234678899999998899999999999998765

>PRK05637 anthranilate synthase component II; Provisional

Probab=97.46  E-value=0.00057  Score=54.11  Aligned_cols=87  Identities=16%  Similarity=0.171  Sum_probs=56.1

Q ss_pred             CeEEEEec-CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            9 RSVLLLCG-DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         9 ~kI~il~~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +||+++=+ |+|    .....+.|+..|..++++..+.                                .++++....|
T Consensus         2 ~~il~iD~~dsf----~~nl~~~l~~~g~~~~v~~~~~--------------------------------~~~~l~~~~~   45 (208)
T PRK05637          2 THVVLIDNHDSF----VYNLVDAFAVAGYKCTVFRNTV--------------------------------PVEEILAANP   45 (208)
T ss_pred             CEEEEEECCcCH----HHHHHHHHHHCCCcEEEEeCCC--------------------------------CHHHHHhcCC
Confidence            57655543 333    3447788999998887775421                                1111112368


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||+-||++...  +.....++++++. .++||.+||.|.++|+.+
T Consensus        46 ~~iIlsgGPg~~~--d~~~~~~li~~~~-~~~PiLGIClG~Qlla~a   89 (208)
T PRK05637         46 DLICLSPGPGHPR--DAGNMMALIDRTL-GQIPLLGICLGFQALLEH   89 (208)
T ss_pred             CEEEEeCCCCCHH--HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHH
Confidence            9999988876321  2223456665543 579999999999999986

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=97.46  E-value=0.00049  Score=53.81  Aligned_cols=87  Identities=16%  Similarity=0.224  Sum_probs=55.8

Q ss_pred             EEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEE
Q 027708           13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVI   92 (220)
Q Consensus        13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~lii   92 (220)
                      |++-|..+.... ...+.|+..|+.+.++.....+                         +.   .+.+   .++|.+++
T Consensus         2 il~id~~dsft~-~~~~~l~~~g~~~~~~~~~~~~-------------------------~~---~~~~---~~~~~iil   49 (193)
T PRK08857          2 LLMIDNYDSFTY-NLYQYFCELGAQVKVVRNDEID-------------------------ID---GIEA---LNPTHLVI   49 (193)
T ss_pred             EEEEECCCCcHH-HHHHHHHHCCCcEEEEECCCCC-------------------------HH---HHhh---CCCCEEEE
Confidence            455565553322 3678889999988887543110                         00   1122   25889999


Q ss_pred             cCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           93 PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        93 pGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      -||++...  ++....++++. .+.++||.+||-|.++|+.+
T Consensus        50 sgGp~~~~--~~~~~~~~i~~-~~~~~PiLGIClG~Qlia~a   88 (193)
T PRK08857         50 SPGPCTPN--EAGISLQAIEH-FAGKLPILGVCLGHQAIAQV   88 (193)
T ss_pred             eCCCCChH--HCcchHHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            99874221  23334567765 57899999999999999876

>CHL00101 trpG anthranilate synthase component 2

Probab=97.45  E-value=0.00043  Score=54.01  Aligned_cols=46  Identities=13%  Similarity=0.088  Sum_probs=33.8

Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ++|.|||.||++...  +.. +...+.+..+.++||.+||-|.++|+.+
T Consensus        43 ~~dgiiisgGpg~~~--~~~-~~~~i~~~~~~~~PiLGIClG~Qlla~~   88 (190)
T CHL00101         43 NIRHIIISPGPGHPR--DSG-ISLDVISSYAPYIPILGVCLGHQSIGYL   88 (190)
T ss_pred             CCCEEEECCCCCChH--HCc-chHHHHHHhcCCCcEEEEchhHHHHHHH
Confidence            699999999986321  122 2333444567899999999999999885

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=97.42  E-value=0.0005  Score=53.87  Aligned_cols=87  Identities=20%  Similarity=0.243  Sum_probs=54.9

Q ss_pred             EEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEE
Q 027708           13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVI   92 (220)
Q Consensus        13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~lii   92 (220)
                      |++-|..+... ....+.|++.|.++.++..+..                               .++++...+||.||+
T Consensus         2 il~idn~dsft-~nl~~~l~~~g~~v~v~~~~~~-------------------------------~~~~~~~~~~d~iIl   49 (195)
T PRK07649          2 ILMIDNYDSFT-FNLVQFLGELGQELVVKRNDEV-------------------------------TISDIENMKPDFLMI   49 (195)
T ss_pred             EEEEeCCCccH-HHHHHHHHHCCCcEEEEeCCCC-------------------------------CHHHHhhCCCCEEEE
Confidence            45555544222 2378889999998877754321                               011111136899999


Q ss_pred             cCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           93 PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        93 pGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||++...  +.....+.++. ++.++||.+||-|.++|+.+
T Consensus        50 sgGP~~p~--~~~~~~~~i~~-~~~~~PvLGIClG~Qlla~~   88 (195)
T PRK07649         50 SPGPCSPN--EAGISMEVIRY-FAGKIPIFGVCLGHQSIAQV   88 (195)
T ss_pred             CCCCCChH--hCCCchHHHHH-hcCCCCEEEEcHHHHHHHHH
Confidence            99985321  12234455554 35789999999999999876

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=97.40  E-value=0.0011  Score=57.15  Aligned_cols=87  Identities=21%  Similarity=0.310  Sum_probs=60.0

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+++=+ |+.    ......|++.|.++.++....                                +.+++...++|
T Consensus       193 ~~I~viD~-g~k----~ni~~~L~~~G~~v~vvp~~~--------------------------------~~~~i~~~~~d  235 (382)
T CHL00197        193 LKIIVIDF-GVK----YNILRRLKSFGCSITVVPATS--------------------------------PYQDILSYQPD  235 (382)
T ss_pred             CEEEEEEC-CcH----HHHHHHHHHCCCeEEEEcCCC--------------------------------CHHHHhccCCC
Confidence            56776655 444    347788888899887773211                                11122223699


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||+.||++..  ......++.++++.+.+.||.+||.|-.+|+.+
T Consensus       236 gIilSgGPg~p--~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a  279 (382)
T CHL00197        236 GILLSNGPGDP--SAIHYGIKTVKKLLKYNIPIFGICMGHQILSLA  279 (382)
T ss_pred             EEEEcCCCCCh--hHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHH
Confidence            99999997632  133456777888877789999999999999865

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.40  E-value=0.00059  Score=53.71  Aligned_cols=48  Identities=25%  Similarity=0.338  Sum_probs=34.8

Q ss_pred             CccEEEEcCCCCccc----ccCChHHHHHHHHH-HhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEY----LAMNDSVIDLVRKF-SNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~----~~~~~~l~~~l~~~-~~~g~~i~aic~G~~~La~a  134 (220)
                      .+|.||+||+..+..    +... .+...|+++ .++++||.+||.|.++|+.+
T Consensus        37 ~~d~lilPG~g~~~~~~~~l~~~-~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~   89 (201)
T PRK13152         37 KADKLLLPGVGSFKEAMKNLKEL-GFIEALKEQVLVQKKPILGICLGMQLFLER   89 (201)
T ss_pred             CCCEEEECCCCchHHHHHHHHHc-CcHHHHHHHHHhCCCcEEEECHhHHHHhhc
Confidence            589999999866432    1111 234555554 57899999999999999987

>PLN02335 anthranilate synthase

Probab=97.39  E-value=0.00083  Score=53.71  Aligned_cols=90  Identities=14%  Similarity=0.197  Sum_probs=57.0

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      .++|+|+  |.. ..--....+.|++.|.++.++..+..                               .++++....+
T Consensus        18 ~~~ilvi--D~~-dsft~~i~~~L~~~g~~~~v~~~~~~-------------------------------~~~~~~~~~~   63 (222)
T PLN02335         18 NGPIIVI--DNY-DSFTYNLCQYMGELGCHFEVYRNDEL-------------------------------TVEELKRKNP   63 (222)
T ss_pred             cCcEEEE--ECC-CCHHHHHHHHHHHCCCcEEEEECCCC-------------------------------CHHHHHhcCC
Confidence            4577777  432 22345578888999998888754210                               1111111358


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.|||.||++...  +.....+++++ ....+||.+||.|..+|+.+
T Consensus        64 d~iVisgGPg~p~--d~~~~~~~~~~-~~~~~PiLGIClG~QlLa~a  107 (222)
T PLN02335         64 RGVLISPGPGTPQ--DSGISLQTVLE-LGPLVPLFGVCMGLQCIGEA  107 (222)
T ss_pred             CEEEEcCCCCChh--hccchHHHHHH-hCCCCCEEEecHHHHHHHHH
Confidence            9999999986322  12233555554 35679999999999999865

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=97.35  E-value=0.0013  Score=50.86  Aligned_cols=47  Identities=19%  Similarity=0.210  Sum_probs=34.9

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .++|.||+.||.+...  ++ .....+++...+++||.+||.|..+|+.+
T Consensus        41 ~~~dgvil~gG~~~~~--~~-~~~~~i~~~~~~~~PvlGIC~G~Qlla~~   87 (184)
T cd01743          41 LNPDAIVISPGPGHPE--DA-GISLEIIRALAGKVPILGVCLGHQAIAEA   87 (184)
T ss_pred             cCCCEEEECCCCCCcc--cc-hhHHHHHHHHhcCCCEEEECHhHHHHHHH
Confidence            4799999988765321  22 24555666667889999999999999886

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>PRK13566 anthranilate synthase; Provisional

Probab=97.34  E-value=0.0013  Score=61.12  Aligned_cols=89  Identities=16%  Similarity=0.115  Sum_probs=64.4

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ++||+|+=+..   .-.....+.|+..|.++.++.....                             ...++   ..++
T Consensus       526 g~~IlvID~~d---sf~~~l~~~Lr~~G~~v~vv~~~~~-----------------------------~~~~~---~~~~  570 (720)
T PRK13566        526 GKRVLLVDHED---SFVHTLANYFRQTGAEVTTVRYGFA-----------------------------EEMLD---RVNP  570 (720)
T ss_pred             CCEEEEEECCC---chHHHHHHHHHHCCCEEEEEECCCC-----------------------------hhHhh---hcCC
Confidence            56777776653   3467888899999999888765321                             00111   1369


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||+.||++..   .+..+.+++++..++++||.+||-|.++|+.+
T Consensus       571 DgVVLsgGpgsp---~d~~~~~lI~~a~~~~iPILGIClG~QlLa~a  614 (720)
T PRK13566        571 DLVVLSPGPGRP---SDFDCKATIDAALARNLPIFGVCLGLQAIVEA  614 (720)
T ss_pred             CEEEECCCCCCh---hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHH
Confidence            999998877532   23346799999999999999999999999876

>PRK00758 GMP synthase subunit A; Validated

Probab=97.32  E-value=0.00088  Score=51.89  Aligned_cols=43  Identities=28%  Similarity=0.568  Sum_probs=32.9

Q ss_pred             Cc-cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KY-DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~-D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ++ |.||++||....   ....+.+|++   +.++||.+||.|.++|+.+
T Consensus        40 ~~~dgivi~Gg~~~~---~~~~~~~~l~---~~~~PilGIC~G~Q~L~~a   83 (184)
T PRK00758         40 AFEDGLILSGGPDIE---RAGNCPEYLK---ELDVPILGICLGHQLIAKA   83 (184)
T ss_pred             hcCCEEEECCCCChh---hccccHHHHH---hCCCCEEEEeHHHHHHHHh
Confidence            45 999999997422   2234566776   3589999999999999987

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.31  E-value=0.00056  Score=53.36  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=55.1

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL   90 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l   90 (220)
                      |+|+=|..-+   +......|++.|.++.++...                                   +++  .++|.|
T Consensus         2 i~iidyg~gN---~~s~~~al~~~g~~~~~v~~~-----------------------------------~~l--~~~D~l   41 (192)
T PRK13142          2 IVIVDYGLGN---ISNVKRAIEHLGYEVVVSNTS-----------------------------------KII--DQAETI   41 (192)
T ss_pred             EEEEEcCCcc---HHHHHHHHHHcCCCEEEEeCH-----------------------------------HHh--ccCCEE
Confidence            6777666544   455566777778777665321                                   122  368999


Q ss_pred             EEcCCCCccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           91 VIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        91 iipGG~~~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |+||+.....   ......+.+.|++  ..++++.+||.|-++|++.
T Consensus        42 IlPG~g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~   86 (192)
T PRK13142         42 ILPGVGHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEH   86 (192)
T ss_pred             EECCCCCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhh
Confidence            9999855321   1122246777777  5699999999999999875

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=97.31  E-value=0.00068  Score=59.37  Aligned_cols=49  Identities=27%  Similarity=0.485  Sum_probs=39.6

Q ss_pred             CCccEEEEcCCCCc---ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAP---EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~---~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +++|+|++|||...   ..+..+... +-|+++.++|++|.++|.|-.+|++.
T Consensus       273 p~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~q~L~~~  324 (433)
T PRK13896        273 PDCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGLMALAES  324 (433)
T ss_pred             CCCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHHHHhhcc
Confidence            37899999999742   224445445 88999999999999999999999875

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=97.28  E-value=0.0012  Score=56.39  Aligned_cols=86  Identities=23%  Similarity=0.319  Sum_probs=58.1

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+++=+ |+.    ......|.+.|..+.++..+.                                +++++....+|
T Consensus       174 ~~i~viD~-G~k----~ni~~~L~~~G~~v~vvp~~~--------------------------------~~~~i~~~~pD  216 (358)
T TIGR01368       174 KRVVVIDF-GVK----QNILRRLVKRGCEVTVVPYDT--------------------------------DAEEIKKYNPD  216 (358)
T ss_pred             cEEEEEeC-CcH----HHHHHHHHHCCCEEEEEcCCC--------------------------------CHHHHHhhCCC
Confidence            35665544 433    356778888888877663211                                11222112469


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||++||++..  ......+++++++.+ ++||.+||.|.++|+.+
T Consensus       217 GIiLSgGPgdp--~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a  259 (358)
T TIGR01368       217 GIFLSNGPGDP--AAVEPAIETIRKLLE-KIPIFGICLGHQLLALA  259 (358)
T ss_pred             EEEECCCCCCH--HHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence            99999997632  235677888998887 99999999999999875

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=97.28  E-value=0.00086  Score=53.16  Aligned_cols=48  Identities=27%  Similarity=0.437  Sum_probs=38.9

Q ss_pred             CccEEEEcCCCCcc----cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPE----YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~----~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ++|.||+||+....    .+ ....+.++|+++.+++++|.+||.|..+|+++
T Consensus        37 ~~d~iIlPG~g~~~~~~~~l-~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~   88 (210)
T PRK14004         37 NSKALILPGDGHFDKAMENL-NSTGLRSTIDKHVESGKPLFGICIGFQILFES   88 (210)
T ss_pred             cCCEEEECCCCchHHHHHHH-HHcCcHHHHHHHHHcCCCEEEECHhHHHHHHh
Confidence            78999999986422    12 23358889999999999999999999999885

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=97.24  E-value=0.00046  Score=53.76  Aligned_cols=50  Identities=30%  Similarity=0.480  Sum_probs=38.3

Q ss_pred             CCccEEEEcCCCCccc---------------ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEY---------------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~---------------~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ..+|.||+|||.+...               ...+....++++++.+.++||.+||.|.++|+.+
T Consensus        52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~  116 (189)
T cd01745          52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVA  116 (189)
T ss_pred             hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHH
Confidence            3699999999974211               0112345789999999999999999999998865

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=97.23  E-value=0.00049  Score=53.49  Aligned_cols=79  Identities=29%  Similarity=0.484  Sum_probs=57.1

Q ss_pred             hHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccccC
Q 027708           24 AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAM  103 (220)
Q Consensus        24 ~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~~~  103 (220)
                      .......|+..|.+++++......                         ..+   .+  ...+||.++|+||.+...  +
T Consensus        10 ~~~l~~~l~~~~~~~~v~~~~~~~-------------------------~~~---~~--~~~~~d~iii~Gg~~~~~--d   57 (192)
T PF00117_consen   10 THSLVRALRELGIDVEVVRVDSDF-------------------------EEP---LE--DLDDYDGIIISGGPGSPY--D   57 (192)
T ss_dssp             HHHHHHHHHHTTEEEEEEETTGGH-------------------------HHH---HH--HTTTSSEEEEECESSSTT--S
T ss_pred             HHHHHHHHHHCCCeEEEEECCCch-------------------------hhh---hh--hhcCCCEEEECCcCCccc--c
Confidence            345677888888888777543210                         000   01  134799999999976432  2


Q ss_pred             ChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708          104 NDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus       104 ~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .....++++++.+.++|+.+||.|..+|+.+
T Consensus        58 ~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~   88 (192)
T PF00117_consen   58 IEGLIELIREARERKIPILGICLGHQILAHA   88 (192)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEETHHHHHHHHH
T ss_pred             ccccccccccccccceEEEEEeehhhhhHHh
Confidence            5788899999999999999999999999875

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=97.20  E-value=0.00093  Score=57.72  Aligned_cols=91  Identities=21%  Similarity=0.346  Sum_probs=69.7

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      .||+|.-=.-|+ +=+-.-.+.|+..|.++..+||-.+                                 +++ +++.|
T Consensus       246 ~rIAVA~D~AF~-FyY~~nl~~Lr~~GAelv~FSPL~D---------------------------------~~l-P~~~D  290 (451)
T COG1797         246 VRIAVARDAAFN-FYYPENLELLREAGAELVFFSPLAD---------------------------------EEL-PPDVD  290 (451)
T ss_pred             ceEEEEecchhc-cccHHHHHHHHHCCCEEEEeCCcCC---------------------------------CCC-CCCCC
Confidence            478887644443 2233446789999999999987432                                 122 23699


Q ss_pred             EEEEcCCCC---cccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRA---PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~---~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +|++|||+-   +..|.++....+.|+++++.|++|.+=|.|-..|.++
T Consensus       291 ~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~  339 (451)
T COG1797         291 AVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES  339 (451)
T ss_pred             EEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh
Confidence            999999963   3457889999999999999999999999999988875

>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E

Probab=97.18  E-value=0.00096  Score=52.97  Aligned_cols=50  Identities=10%  Similarity=0.080  Sum_probs=39.2

Q ss_pred             CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+.|+|++|||.....  ......+.+.|++.+++|++++++|.|+.++.+.
T Consensus        79 ~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~  130 (212)
T cd03146          79 LEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFPS  130 (212)
T ss_pred             hcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence            4799999999853221  1223367888999899999999999999999884

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=97.15  E-value=0.0031  Score=58.63  Aligned_cols=89  Identities=21%  Similarity=0.226  Sum_probs=63.0

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      .++|+|+=+.   ........+.|+..|.++.++.....                             ...++   ..++
T Consensus       516 ~~~IlVID~g---ds~~~~l~~~L~~~G~~v~vv~~~~~-----------------------------~~~~~---~~~~  560 (717)
T TIGR01815       516 GRRILLVDHE---DSFVHTLANYLRQTGASVTTLRHSHA-----------------------------EAAFD---ERRP  560 (717)
T ss_pred             CCEEEEEECC---ChhHHHHHHHHHHCCCeEEEEECCCC-----------------------------hhhhh---hcCC
Confidence            4678888654   23466788899999998877643210                             00011   1369


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.|||.||++..   .+....++|++..+.++||.+||.|.++|+.+
T Consensus       561 DgLILsgGPGsp---~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a  604 (717)
T TIGR01815       561 DLVVLSPGPGRP---ADFDVAGTIDAALARGLPVFGVCLGLQGMVEA  604 (717)
T ss_pred             CEEEEcCCCCCc---hhcccHHHHHHHHHCCCCEEEECHHHHHHhhh
Confidence            999998887632   23345788888889999999999999999987

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=97.15  E-value=0.00078  Score=59.65  Aligned_cols=45  Identities=36%  Similarity=0.597  Sum_probs=34.0

Q ss_pred             CCccEEEEcCCCCc--ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~--~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .++|.||+|||...  ..+  ...+.++|+++   |++|.+||.|-++|++.
T Consensus        35 ~~~D~lILPGG~~~~~~~l--~~~l~~~i~~~---g~pvlGICgG~QmLg~~   81 (476)
T PRK06278         35 KDLDGLIIPGGSLVESGSL--TDELKKEILNF---DGYIIGICSGFQILSEK   81 (476)
T ss_pred             ccCCEEEECCCchhhcchH--HHHHHHHHHHc---CCeEEEEcHHHHhcccc
Confidence            37999999998421  111  24566666666   99999999999999987

>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP)

Probab=97.15  E-value=0.00099  Score=47.43  Aligned_cols=45  Identities=29%  Similarity=0.491  Sum_probs=34.4

Q ss_pred             CCccEEEEcCCCCcc---cccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708           85 TKYDGLVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLIL  131 (220)
Q Consensus        85 ~~~D~liipGG~~~~---~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L  131 (220)
                      .++|.||+|||....   .+. ... .+.|+++.++|+++.+||.|+.+.
T Consensus        43 ~~ad~lVlPGGa~~~~~~~L~-~~g-~~~i~~~v~~g~p~LGIClGAy~a   90 (114)
T cd03144          43 SKTALLVVPGGADLPYCRALN-GKG-NRRIRNFVRNGGNYLGICAGAYLA   90 (114)
T ss_pred             hCCCEEEECCCChHHHHHHHH-hhC-cHHHHHHHHCCCcEEEEecCccce
Confidence            379999999975322   232 223 788888889999999999999774

Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=97.10  E-value=0.0013  Score=58.56  Aligned_cols=49  Identities=22%  Similarity=0.462  Sum_probs=40.5

Q ss_pred             CCccEEEEcCCCCccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           85 TKYDGLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        85 ~~~D~liipGG~~~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      +++|+|++|||.....   +..+..+.+.|+++.++|++|.++|.|-.+|++
T Consensus       283 ~~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~  334 (475)
T TIGR00313       283 TGCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGK  334 (475)
T ss_pred             ccCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhh
Confidence            4799999999975321   234556889999999999999999999999998

>PRK05282 (alpha)-aspartyl dipeptidase; Validated

Probab=97.05  E-value=0.0019  Score=51.94  Aligned_cols=51  Identities=10%  Similarity=0.195  Sum_probs=40.7

Q ss_pred             CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708           85 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  135 (220)
Q Consensus        85 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag  135 (220)
                      .+.|+|+|+||....  .......+.+.|+++.++|+++++.|+|+.+++...
T Consensus        78 ~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i  130 (233)
T PRK05282         78 ENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTI  130 (233)
T ss_pred             hcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccc
Confidence            478999999997532  223455688889999999999999999999987654

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=97.04  E-value=0.0016  Score=55.51  Aligned_cols=47  Identities=26%  Similarity=0.420  Sum_probs=37.6

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ..+|.||++||++..  .+.....++++++.++ +||.+||.|.++|+.+
T Consensus       207 ~~~DGIiLsgGPgdp--~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a  253 (354)
T PRK12838        207 LNPDGIVLSNGPGDP--KELQPYLPEIKKLISS-YPILGICLGHQLIALA  253 (354)
T ss_pred             cCCCEEEEcCCCCCh--HHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHH
Confidence            369999999998532  2345677888888877 9999999999999865

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=96.72  E-value=0.0036  Score=50.50  Aligned_cols=46  Identities=20%  Similarity=0.333  Sum_probs=37.9

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      .++|.|+++||.+...   ......++++..+.++|+.+||.|.++|+.
T Consensus        54 ~~~dgivl~GG~~~~~---~~~~~~~i~~~~~~~~PvlGIClG~Q~l~~   99 (235)
T cd01746          54 KGADGILVPGGFGIRG---VEGKILAIKYARENNIPFLGICLGMQLAVI   99 (235)
T ss_pred             ccCCEEEECCCCCCcc---hhhHHHHHHHHHHCCceEEEEEhHHHHHHH
Confidence            4799999999986432   346678899999999999999999988754

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown

Probab=96.69  E-value=0.0088  Score=51.20  Aligned_cols=92  Identities=21%  Similarity=0.313  Sum_probs=65.6

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhC---CCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAF---GVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~a---g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      +|+|.--+|.....+...+..|+..   .+.|..++.+.                           +..+ .+.    ..
T Consensus         2 nVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~---------------------------l~~~-pw~----~~   49 (367)
T PF09825_consen    2 NVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADE---------------------------LLNE-PWQ----SK   49 (367)
T ss_pred             eEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHH---------------------------hhcC-ccc----cC
Confidence            7888888999999999999988852   45555553321                           1111 111    36


Q ss_pred             ccEEEEcCCCCccccc-CChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           87 YDGLVIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        87 ~D~liipGG~~~~~~~-~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      ++++|+|||.+..+.. -++.-.+.||++.++|+.-.++|+|+.+-.+
T Consensus        50 ~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~   97 (367)
T PF09825_consen   50 CALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS   97 (367)
T ss_pred             CcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence            8999999997643322 2566688899999999999999999988654

It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.

>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]

Probab=96.64  E-value=0.0042  Score=46.72  Aligned_cols=49  Identities=27%  Similarity=0.506  Sum_probs=38.5

Q ss_pred             CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhCC-CeEEEEehHHHHHHh
Q 027708           85 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAA  133 (220)
Q Consensus        85 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~g-~~i~aic~G~~~La~  133 (220)
                      .+.|++|||||.+..  .+.+-..+.+-|.++..++ +++.+.|+|..+|.+
T Consensus        55 aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~  106 (226)
T KOG3210|consen   55 AQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQ  106 (226)
T ss_pred             hhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhh
Confidence            489999999997632  2333334888888888877 999999999998865

>PLN02347 GMP synthetase

Probab=96.57  E-value=0.012  Score=52.97  Aligned_cols=49  Identities=14%  Similarity=0.266  Sum_probs=33.6

Q ss_pred             CccEEEEcCCCCcccccCChHHH-HHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVI-DLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~-~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+|.||++||++..+....+.+. .+++...+.+.||.+||.|.++|+.+
T Consensus        53 ~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~a  102 (536)
T PLN02347         53 NPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQK  102 (536)
T ss_pred             CCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHH
Confidence            68999999997533222233222 23333345689999999999999986

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=96.51  E-value=0.0093  Score=51.78  Aligned_cols=46  Identities=22%  Similarity=0.421  Sum_probs=36.5

Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ++|.||+.||++..  ...+...+.+++.. .++||.+||.|-++|+.+
T Consensus       281 ~pDGIiLSnGPGDP--~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~A  326 (415)
T PLN02771        281 KPDGVLFSNGPGDP--SAVPYAVETVKELL-GKVPVFGICMGHQLLGQA  326 (415)
T ss_pred             CCCEEEEcCCCCCh--hHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHh
Confidence            69999999997632  23456777777766 478999999999999876

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=96.47  E-value=0.016  Score=44.75  Aligned_cols=98  Identities=21%  Similarity=0.345  Sum_probs=64.9

Q ss_pred             EecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEc
Q 027708           14 LCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIP   93 (220)
Q Consensus        14 l~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liip   93 (220)
                      |+-|+++-. ...+++.|+..|.++.++..+.                           +    +...+....+|+|+|.
T Consensus         5 L~IDNyDSF-tyNLv~yl~~lg~~v~V~rnd~---------------------------~----~~~~~~~~~pd~iviS   52 (191)
T COG0512           5 LLIDNYDSF-TYNLVQYLRELGAEVTVVRNDD---------------------------I----SLELIEALKPDAIVIS   52 (191)
T ss_pred             EEEECccch-HHHHHHHHHHcCCceEEEECCc---------------------------c----CHHHHhhcCCCEEEEc
Confidence            444554422 3566888888888877765431                           0    1112223368999998


Q ss_pred             CCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC---------cccCCceEecCC
Q 027708           94 GGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA---------DVVKGRKCTAYP  146 (220)
Q Consensus        94 GG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a---------glL~g~~~T~~~  146 (220)
                      -|++...  +.....+.|+++ ....||.+||-|=+.++.+         .+..||.-..+.
T Consensus        53 PGPG~P~--d~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HGK~s~i~h  111 (191)
T COG0512          53 PGPGTPK--DAGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHGKTSIITH  111 (191)
T ss_pred             CCCCChH--HcchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCCeeeeeec
Confidence            8877432  455678888888 6678999999999999875         267776654433

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=96.46  E-value=0.0039  Score=50.88  Aligned_cols=49  Identities=24%  Similarity=0.340  Sum_probs=38.2

Q ss_pred             CccEEEEcCCC-Ccc--------c-----ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGR-APE--------Y-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~-~~~--------~-----~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+|.||++||. +..        .     ..++....++++.+.++++||.+||-|.++|+.+
T Consensus        61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva  123 (254)
T PRK11366         61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVA  123 (254)
T ss_pred             hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHH
Confidence            59999999984 321        0     0123456799999999999999999999999766

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=96.24  E-value=0.013  Score=52.80  Aligned_cols=78  Identities=13%  Similarity=0.048  Sum_probs=49.2

Q ss_pred             HHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCc-ccccC
Q 027708           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAM  103 (220)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~-~~~~~  103 (220)
                      ....+.|+..|.++.+++....                            .+..++++...++|.||+.||++. .+...
T Consensus        15 ~nl~~~lr~~g~~v~V~~~~~~----------------------------~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~   66 (531)
T PRK09522         15 YNLADQLRSNGHNVVIYRNHIP----------------------------AQTLIERLATMSNPVLMLSPGPGVPSEAGC   66 (531)
T ss_pred             HHHHHHHHHCCCCEEEEECCCC----------------------------CccCHHHHHhcCcCEEEEcCCCCChhhCCC
Confidence            4467888888988888764310                            011222222235889999999863 22222


Q ss_pred             ChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708          104 NDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus       104 ~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+    ++.+....++||.+||.|.++|+.+
T Consensus        67 ~~----~i~~~~~~~iPILGIClG~QlLa~a   93 (531)
T PRK09522         67 MP----ELLTRLRGKLPIIGICLGHQAIVEA   93 (531)
T ss_pred             CH----HHHHHHhcCCCEEEEcHHHHHHHHh
Confidence            22    3333345689999999999999876

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=96.23  E-value=0.013  Score=52.99  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=34.8

Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+|.||+.||++...  ++....++++.+ ..++||.+||-|.++|+.+
T Consensus        44 ~~d~vIlsgGP~~p~--~~~~~~~li~~~-~~~~PvLGIClG~QlLa~a   89 (534)
T PRK14607         44 NPSHIVISPGPGRPE--EAGISVEVIRHF-SGKVPILGVCLGHQAIGYA   89 (534)
T ss_pred             CCCEEEECCCCCChh--hCCccHHHHHHh-hcCCCEEEEcHHHHHHHHH
Confidence            689999999986321  223345667664 6789999999999999876

>PRK00074 guaA GMP synthase; Reviewed

Probab=96.21  E-value=0.029  Score=50.47  Aligned_cols=88  Identities=16%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      .+|+||=| |..  -.......++..|....++..+..                             ...+.+   .++|
T Consensus         4 ~~i~vlD~-Gsq--~~~li~r~lrelg~~~~v~p~~~~-----------------------------~~~l~~---~~~d   48 (511)
T PRK00074          4 DKILILDF-GSQ--YTQLIARRVRELGVYSEIVPYDIS-----------------------------AEEIRA---FNPK   48 (511)
T ss_pred             CEEEEEEC-CCC--cHHHHHHHHHHCCCeEEEEECCCC-----------------------------HHHHhc---cCCC
Confidence            46887777 333  234456788888876666532210                             011222   2579


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||++||+...+-...+.+   .+...+.++||.+||.|.++|+.+
T Consensus        49 gIIlsGGp~sv~~~~~p~~---~~~i~~~~~PvLGIC~G~QlLa~~   91 (511)
T PRK00074         49 GIILSGGPASVYEEGAPRA---DPEIFELGVPVLGICYGMQLMAHQ   91 (511)
T ss_pred             EEEECCCCcccccCCCccc---cHHHHhCCCCEEEECHHHHHHHHH
Confidence            9999999753221122333   244556799999999999999875

>PRK05380 pyrG CTP synthetase; Validated

Probab=95.91  E-value=0.014  Score=52.08  Aligned_cols=46  Identities=22%  Similarity=0.366  Sum_probs=37.8

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      ..+|.|++|||++...   .+..+.+++.+.++++|+.+||.|.++++-
T Consensus       342 ~~~DGIIlpGGfG~~~---~~g~i~~i~~a~e~~iPiLGIClGmQll~v  387 (533)
T PRK05380        342 KGVDGILVPGGFGERG---IEGKILAIRYARENNIPFLGICLGMQLAVI  387 (533)
T ss_pred             hcCCEEEecCCCCccc---cccHHHHHHHHHHCCCcEEEEchHHHHHHH
Confidence            4799999999987532   335678889889999999999999987753

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=95.88  E-value=0.018  Score=46.13  Aligned_cols=49  Identities=27%  Similarity=0.437  Sum_probs=39.2

Q ss_pred             CCccEEEEcCCCCc--c-------------cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           85 TKYDGLVIPGGRAP--E-------------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        85 ~~~D~liipGG~~~--~-------------~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      +..|.|+++||.+.  .             +..+|.-.+.+|+++.++++||.+||-|..+|--
T Consensus        59 ~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNV  122 (243)
T COG2071          59 DLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNV  122 (243)
T ss_pred             hhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHH
Confidence            46899999999432  1             1235667889999999999999999999998853

>PRK06186 hypothetical protein; Validated

Probab=95.77  E-value=0.018  Score=46.10  Aligned_cols=44  Identities=18%  Similarity=0.293  Sum_probs=36.6

Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHH
Q 027708           84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI  130 (220)
Q Consensus        84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~  130 (220)
                      ..++|.|+||||.+.+   .-+--+..++.+..+++|+.+||-|.++
T Consensus        51 l~~~dgilvpgGfg~r---g~~Gki~ai~~Are~~iP~LGIClGmQ~   94 (229)
T PRK06186         51 LAGFDGIWCVPGSPYR---NDDGALTAIRFARENGIPFLGTCGGFQH   94 (229)
T ss_pred             HhhCCeeEeCCCCCcc---cHhHHHHHHHHHHHcCCCeEeechhhHH
Confidence            3479999999998843   3456677789999999999999999984

>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins

Probab=95.74  E-value=0.033  Score=44.04  Aligned_cols=50  Identities=18%  Similarity=0.356  Sum_probs=37.5

Q ss_pred             CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+.|+|+++||.....  ......+.+.|++.+++|+++++.|+|+.++.+.
T Consensus        79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~  130 (210)
T cd03129          79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET  130 (210)
T ss_pred             hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence            4799999999975432  1233345666666667999999999999999984

Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=95.18  E-value=0.028  Score=46.44  Aligned_cols=49  Identities=20%  Similarity=0.444  Sum_probs=32.8

Q ss_pred             CCccEEEEcCCC-Ccc---cccCChHHHHHHHHHHhCC--CeEEEEehHHHHHHh
Q 027708           85 TKYDGLVIPGGR-APE---YLAMNDSVIDLVRKFSNSG--KTIASICHGQLILAA  133 (220)
Q Consensus        85 ~~~D~liipGG~-~~~---~~~~~~~l~~~l~~~~~~g--~~i~aic~G~~~La~  133 (220)
                      ..+|.|++|||. ...   .......+.++..+..++|  .||.++|.|..+|+.
T Consensus        53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~  107 (273)
T cd01747          53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTY  107 (273)
T ss_pred             hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHH
Confidence            478999999985 322   1122234445555555555  799999999998876

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=95.17  E-value=0.059  Score=45.58  Aligned_cols=55  Identities=27%  Similarity=0.415  Sum_probs=44.0

Q ss_pred             CcCCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           78 TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        78 ~l~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +.+++-.-++|.||+.-|+|..  ..-+..++.++++....+|+.+||-|=++|+.|
T Consensus       212 ~~eeIl~~~pDGiflSNGPGDP--~~~~~~i~~ik~l~~~~iPifGICLGHQllalA  266 (368)
T COG0505         212 SAEEILALNPDGIFLSNGPGDP--APLDYAIETIKELLGTKIPIFGICLGHQLLALA  266 (368)
T ss_pred             CHHHHHhhCCCEEEEeCCCCCh--hHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHh
Confidence            3444333479999999998743  346688899999999999999999999999876

>COG3442 Predicted glutamine amidotransferase [General function prediction only]

Probab=94.99  E-value=0.023  Score=44.72  Aligned_cols=50  Identities=22%  Similarity=0.351  Sum_probs=38.2

Q ss_pred             CCccEEEEcCCCCccc--ccCC-hHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEY--LAMN-DSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~--~~~~-~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ..+|++++.||.+-..  ..++ ..-.+-|++....|+|+.+||.|..+|...
T Consensus        51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y  103 (250)
T COG3442          51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY  103 (250)
T ss_pred             ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence            4799999988765221  1233 455577889999999999999999999863

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=94.98  E-value=0.077  Score=46.85  Aligned_cols=49  Identities=18%  Similarity=0.402  Sum_probs=34.7

Q ss_pred             CccEEEEcCCCCcc-cc--cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPE-YL--AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~-~~--~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +.|++++||-.+.. ++  .+..-+-.-|+++.+++.+|.+||.|-++|.+.
T Consensus       290 ~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~  341 (486)
T COG1492         290 DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRR  341 (486)
T ss_pred             CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhh
Confidence            59999999976532 11  122233345666777799999999999999864

>PLN02327 CTP synthase

Probab=94.80  E-value=0.058  Score=48.51  Aligned_cols=46  Identities=22%  Similarity=0.303  Sum_probs=35.6

Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHH
Q 027708           84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA  132 (220)
Q Consensus        84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La  132 (220)
                      ..++|.|++|||.+...   ....+..++.+..+++|+.+||.|.++++
T Consensus       360 L~~~DGIvvpGGfG~~~---~~G~i~ai~~are~~iP~LGIClGmQl~v  405 (557)
T PLN02327        360 LKGADGILVPGGFGDRG---VEGKILAAKYARENKVPYLGICLGMQIAV  405 (557)
T ss_pred             hccCCEEEeCCCCCCcc---cccHHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence            35899999999986432   22345667777789999999999998775

>TIGR00337 PyrG CTP synthase

Probab=94.72  E-value=0.057  Score=48.34  Aligned_cols=45  Identities=20%  Similarity=0.370  Sum_probs=35.3

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHH
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA  132 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La  132 (220)
                      .++|.|++|||++...   ....+..++.+.+++.|+.+||.|.++++
T Consensus       342 ~~~dGIiLpGG~G~~~---~~g~i~ai~~a~e~~iP~LGIClG~Qll~  386 (525)
T TIGR00337       342 KGVDGILVPGGFGERG---VEGKILAIKYARENNIPFLGICLGMQLAV  386 (525)
T ss_pred             cCCCEEEeCCCCCChh---hcChHHHHHHHHHcCCCEEEEcHHHHHHH
Confidence            4699999999987532   33445677777789999999999998774

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A

Probab=94.62  E-value=0.055  Score=30.51  Aligned_cols=27  Identities=15%  Similarity=0.209  Sum_probs=20.6

Q ss_pred             CeEEEEecC-----------CCCchhhHHHHHHHHhCC
Q 027708            9 RSVLLLCGD-----------YMEDYEAMVPFQALLAFG   35 (220)
Q Consensus         9 ~kI~il~~~-----------g~~~~e~~~~~~~l~~ag   35 (220)
                      |||+|++..           |+...|++.|+++|.++|
T Consensus         1 kkiLiV~Ts~~~~~~~~~~TG~wl~E~~hpy~~f~~aG   38 (38)
T PF13587_consen    1 KKILIVVTSHDKLGDTGRPTGFWLSELAHPYYVFTDAG   38 (38)
T ss_dssp             SEEEEEE---SEECTTTEE--B-HHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCcccccCCCCcceeccHHHhhHHHHHHHCc
Confidence            488888853           788899999999999886

>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]

Probab=94.50  E-value=0.45  Score=37.26  Aligned_cols=50  Identities=32%  Similarity=0.573  Sum_probs=38.6

Q ss_pred             CCCccEEEEcCCCCcccccCC---hHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           84 PTKYDGLVIPGGRAPEYLAMN---DSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        84 ~~~~D~liipGG~~~~~~~~~---~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+.||.++|.|..... ..+.   ..|..++++.....+.|.+||-|-.++|++
T Consensus        57 l~ky~gfvIsGS~~dA-f~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara  109 (245)
T KOG3179|consen   57 LEKYDGFVISGSKHDA-FSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARA  109 (245)
T ss_pred             hhhhceEEEeCCcccc-cccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHh
Confidence            3479999999875422 2222   367788888888889999999999999987

>PRK05368 homoserine O-succinyltransferase; Provisional

Probab=94.42  E-value=0.084  Score=44.13  Aligned_cols=54  Identities=22%  Similarity=0.371  Sum_probs=36.6

Q ss_pred             CcCCCCCCCccEEEEcCCCCc-ccccC------ChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           78 TFDEIDPTKYDGLVIPGGRAP-EYLAM------NDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        78 ~l~~~~~~~~D~liipGG~~~-~~~~~------~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +++++....||++||.|.+-. ....+      -.++++|++   ++++++.+||-|+.+++.+
T Consensus        91 ~~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~---~~~~s~LgICwGaQa~a~a  151 (302)
T PRK05368         91 TFEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAK---THVTSTLFICWAAQAALYH  151 (302)
T ss_pred             CHHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHH---HcCCCEEEEcHHHHHHHHH
Confidence            455555568999999998632 11111      234555555   4589999999999988754

>TIGR02069 cyanophycinase cyanophycinase

Probab=94.02  E-value=0.18  Score=41.03  Aligned_cols=49  Identities=18%  Similarity=0.375  Sum_probs=39.7

Q ss_pred             CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      .+.|+|++.||.....  ......+.+.|++.+++|.++++..+|+.++..
T Consensus        81 ~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~  131 (250)
T TIGR02069        81 SNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSD  131 (250)
T ss_pred             hhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhccc
Confidence            3789999999975332  245667888999999999999999999987753

This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.45  E-value=0.054  Score=43.14  Aligned_cols=49  Identities=31%  Similarity=0.555  Sum_probs=30.2

Q ss_pred             CCccEEEEcCCC-Cc--ccc-------------cCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           85 TKYDGLVIPGGR-AP--EYL-------------AMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        85 ~~~D~liipGG~-~~--~~~-------------~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      +..|.|++|||. +.  ...             .++.--..+++.+.++++||.+||-|..+|.-
T Consensus        57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv  121 (217)
T PF07722_consen   57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNV  121 (217)
T ss_dssp             HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHH
T ss_pred             hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHH
Confidence            368999999998 43  111             12233456777778899999999999998843

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=93.35  E-value=0.14  Score=48.18  Aligned_cols=47  Identities=19%  Similarity=0.323  Sum_probs=33.5

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhC----CCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS----GKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~----g~~i~aic~G~~~La~a  134 (220)
                      ..||.|||.||++...   ++.-..++++..+.    .+||.+||.|.++|+.+
T Consensus        52 ~~~D~VVIspGPG~p~---~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a  102 (742)
T TIGR01823        52 PLFDAIVVGPGPGNPN---NAQDMGIISELWELANLDEVPVLGICLGFQSLCLA  102 (742)
T ss_pred             cCCCEEEECCCCCCcc---chhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence            3799999999887432   22334445554443    59999999999999876

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.11  E-value=0.027  Score=42.26  Aligned_cols=49  Identities=18%  Similarity=0.322  Sum_probs=37.2

Q ss_pred             CccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +.|+|++.||.....  ...+..+.+.|++.+++|+++++..+|+.++...
T Consensus        35 ~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i~~~~   85 (154)
T PF03575_consen   35 EADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMILGPS   85 (154)
T ss_dssp             HSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHCTSSB
T ss_pred             hCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhhccCc
Confidence            799999999965332  2345678999999999999999999999887554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=93.01  E-value=0.37  Score=46.19  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=32.9

Q ss_pred             CccEEEEcCCCCccc-ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~-~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||.|||.+|++... ..+-....++|.++  .+.||.+||.|-++|+.+
T Consensus       131 ~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~  178 (918)
T PLN02889        131 AFDNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYV  178 (918)
T ss_pred             CCCEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHh
Confidence            689999999987322 11112235555543  479999999999999875

>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]

Probab=92.75  E-value=0.55  Score=44.44  Aligned_cols=105  Identities=18%  Similarity=0.244  Sum_probs=69.3

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+||-.+|.+  .-......|.++||+..-++.+-                  .        +.     .....++|-
T Consensus      1059 PkVAilREeGvN--g~rEMa~af~~AgF~~~DVtmtD------------------l--------L~-----G~~~ld~fr 1105 (1320)
T KOG1907|consen 1059 PKVAILREEGVN--GDREMAAAFYAAGFETVDVTMTD------------------L--------LA-----GRHHLDDFR 1105 (1320)
T ss_pred             CceEEeeccccc--cHHHHHHHHHHcCCceeeeeeeh------------------h--------hc-----CceeHhHhc
Confidence            599999999988  34444558889999754443321                  0        00     112234788


Q ss_pred             EEEEcCCCC-cc----------cccCChHHHHHHHHHHh-CCCeEEEEehHHHHHHhCcccCCceEecCCC
Q 027708           89 GLVIPGGRA-PE----------YLAMNDSVIDLVRKFSN-SGKTIASICHGQLILAAADVVKGRKCTAYPP  147 (220)
Q Consensus        89 ~liipGG~~-~~----------~~~~~~~l~~~l~~~~~-~g~~i~aic~G~~~La~aglL~g~~~T~~~~  147 (220)
                      .|+.|||.+ ++          .+..++.+..-..+|++ +...-.+||+|..++++.|.+- -.+-.+|.
T Consensus      1106 Glaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~-p~~~~~p~ 1175 (1320)
T KOG1907|consen 1106 GLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIG-PEVGKWPD 1175 (1320)
T ss_pred             ceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccC-ccccCCCc
Confidence            899999864 11          23467777777777775 4667889999999999998654 24444443

>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]

Probab=92.58  E-value=0.27  Score=46.71  Aligned_cols=47  Identities=30%  Similarity=0.524  Sum_probs=39.8

Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +||.||+..|++...  .-+.+.+-+++....++||.+||.|-++||.+
T Consensus       210 ~yDGlflSNGPGdPe--~~~~~v~~vr~lL~~~~PvfGIClGHQllA~A  256 (1435)
T KOG0370|consen  210 EYDGLFLSNGPGDPE--LCPLLVQNVRELLESNVPVFGICLGHQLLALA  256 (1435)
T ss_pred             ccceEEEeCCCCCch--hhHHHHHHHHHHHhCCCCeEEEehhhHHHHHh
Confidence            899999999987432  35677788888888889999999999999976

>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase

Probab=92.04  E-value=0.19  Score=39.99  Aligned_cols=50  Identities=20%  Similarity=0.375  Sum_probs=40.6

Q ss_pred             CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+.|+|++.||.....  ......+.+.|++.+++|.++++..+|+.++...
T Consensus        82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~  133 (217)
T cd03145          82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT  133 (217)
T ss_pred             HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence            4789999999965432  2355678899999999999999999999998654

Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=91.93  E-value=0.38  Score=42.52  Aligned_cols=42  Identities=24%  Similarity=0.432  Sum_probs=34.4

Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708           87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL  131 (220)
Q Consensus        87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L  131 (220)
                      +|.++||||.+.+   .-+--+..++-+..++.|..+||.|.++.
T Consensus       344 ~dgIlVPGGFG~R---G~eGkI~Ai~yAREn~iP~lGIClGmQ~a  385 (533)
T COG0504         344 VDGILVPGGFGYR---GVEGKIAAIRYARENNIPFLGICLGMQLA  385 (533)
T ss_pred             CCEEEeCCCCCcC---chHHHHHHHHHHHhcCCCEEEEchhHHHH
Confidence            8999999999854   34455667777788899999999999764

>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS)

Probab=90.95  E-value=0.21  Score=38.42  Aligned_cols=54  Identities=20%  Similarity=0.427  Sum_probs=35.5

Q ss_pred             CcCCCCCCCccEEEEcCCCCcccccCC-----hHHHHHHHHHHhCCCeEEEEehHHHHHH
Q 027708           78 TFDEIDPTKYDGLVIPGGRAPEYLAMN-----DSVIDLVRKFSNSGKTIASICHGQLILA  132 (220)
Q Consensus        78 ~l~~~~~~~~D~liipGG~~~~~~~~~-----~~l~~~l~~~~~~g~~i~aic~G~~~La  132 (220)
                      ++++.....||.+||.|.+-- .+...     +++.+.+....+++.++..+|-|+.+..
T Consensus        54 ~~~~i~~~~yDGlIITGApve-~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal  112 (175)
T cd03131          54 TFDDIRDAKFDGLIVTGAPVE-HLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAAL  112 (175)
T ss_pred             CHHHccccCCCEEEEeCCCcc-cCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            455565678999999997531 11111     2444444444477899999999998754

Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti

>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]

Probab=90.89  E-value=0.16  Score=40.41  Aligned_cols=55  Identities=44%  Similarity=0.773  Sum_probs=35.7

Q ss_pred             EcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCC
Q 027708           41 ACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR   96 (220)
Q Consensus        41 ~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~   96 (220)
                      +.+..+..+.+....+...+.+ .+..+-|.++....+|+++....||.|++|||.
T Consensus       193 v~~~~~~~e~~a~~~~~~~~~~-v~~~~~g~~~~~~~~~dd~~~~syD~ivlPgg~  247 (247)
T KOG2764|consen  193 VAPEKKAGEACATADHDLEGRQ-VPVEKVGHNFAKTVAWDDAAVSSYDLIVLPGGR  247 (247)
T ss_pred             cCCCchhcceecceehhhhcCc-ceeeccccceEEEEEehhhhcccccEEEecCCC
Confidence            4444443444444444444332 555566777777777999988899999999984

>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins

Probab=89.61  E-value=7.4  Score=31.82  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=41.0

Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEE-EEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecC
Q 027708           84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIA-SICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEP  162 (220)
Q Consensus        84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~-aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~  162 (220)
                      ++++|+|||+|-..+    -.+.-...|.++..+|..+. .+.....-+  .+...... ...+...+.|.++|..+.+.
T Consensus       195 P~~~d~Lvi~~P~~~----ls~~e~~~l~~yl~~GG~ll~~~d~~~~~~--~~~~~~~~-~~~~~L~~lL~~~Gi~~~~~  267 (271)
T PF09822_consen  195 PDDADVLVIAGPKTD----LSEEELYALDQYLMNGGKLLILLDPFSVEL--QGLWAGGA-QRDSNLNDLLEEYGIRINPG  267 (271)
T ss_pred             CCCCCEEEEECCCCC----CCHHHHHHHHHHHHcCCeEEEEECCccccc--cccccccc-ccccCHHHHHHHcCCEeCCC
Confidence            468999999874332    35667777777887766544 333321111  11111111 11566777888887766654

>COG4285 Uncharacterized conserved protein [Function unknown]

Probab=89.30  E-value=2.9  Score=33.18  Aligned_cols=89  Identities=22%  Similarity=0.393  Sum_probs=60.3

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCC---CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFG---VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag---~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      +|.|.--+|.+...+-.....|+..-   +.|..+..+                            +-.+..|.+    .
T Consensus         2 ~VlVYn~~GvSp~~lkhtv~sLr~~~~p~y~v~~V~~~----------------------------~Li~EpW~~----~   49 (253)
T COG4285           2 NVLVYNGLGVSPYSLKHTVRSLRLFAPPYYAVDRVDAQ----------------------------FLIKEPWEE----T   49 (253)
T ss_pred             ceEEeCCCCCChHHHHHHHHHHHhhccchheEEEeeeh----------------------------eeecCcchh----c
Confidence            68888888999999999998888642   233333211                            111112443    3


Q ss_pred             ccEEEEcCCCCcccc-cCChHHHHHHHHHHhCCCeEEEEehHHHH
Q 027708           87 YDGLVIPGGRAPEYL-AMNDSVIDLVRKFSNSGKTIASICHGQLI  130 (220)
Q Consensus        87 ~D~liipGG~~~~~~-~~~~~l~~~l~~~~~~g~~i~aic~G~~~  130 (220)
                      --+|++|||.+..+. .-++..-+.|..+.++|....+||+|...
T Consensus        50 T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF   94 (253)
T COG4285          50 TLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGYF   94 (253)
T ss_pred             eEEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence            568999999775432 23455667788888899999999999865

>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=89.16  E-value=4.1  Score=34.21  Aligned_cols=87  Identities=20%  Similarity=0.161  Sum_probs=53.0

Q ss_pred             CCeEEEEecCCCCc--hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708            8 KRSVLLLCGDYMED--YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT   85 (220)
Q Consensus         8 ~~kI~il~~~g~~~--~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~   85 (220)
                      .+||+++.-++-..  ..+....+.|...|+++.+.......                     .+...     +......
T Consensus         3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~---------------------~~~~~-----~~~~~~~   56 (305)
T PRK02645          3 LKQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKD---------------------NPYPV-----FLASASE   56 (305)
T ss_pred             cCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhh---------------------ccccc-----hhhcccc
Confidence            36899998876433  23455667788889887665432110                     00000     0011123


Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh-HH
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH-GQ  128 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~-G~  128 (220)
                      .+|++++.||.|        .++..++.+...+.|+++|-. |.
T Consensus        57 ~~d~vi~~GGDG--------T~l~~~~~~~~~~~pv~gin~~G~   92 (305)
T PRK02645         57 LIDLAIVLGGDG--------TVLAAARHLAPHDIPILSVNVGGH   92 (305)
T ss_pred             CcCEEEEECCcH--------HHHHHHHHhccCCCCEEEEecCCc
Confidence            699999999855        445666666677899999987 55

>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]

Probab=88.97  E-value=2  Score=32.43  Aligned_cols=45  Identities=24%  Similarity=0.305  Sum_probs=34.4

Q ss_pred             CCCCccEEEEcCCCCcccccCChHHHHHHHHHHh--CCCeEEEEehHHH
Q 027708           83 DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHGQL  129 (220)
Q Consensus        83 ~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~g~~i~aic~G~~  129 (220)
                      +..+||++||..  ...+...++.+.+|++++..  ..+|.+.+|.+..
T Consensus        44 ~l~~ydavVIgA--sI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vnl~   90 (175)
T COG4635          44 ALEDYDAVVIGA--SIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVNLT   90 (175)
T ss_pred             ChhhCceEEEec--chhhhhhHHHHHHHHHHHHHHHhcCCceEEEeehh
Confidence            456899999954  23334568899999999887  5899999997764

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=88.70  E-value=0.51  Score=37.28  Aligned_cols=51  Identities=18%  Similarity=0.188  Sum_probs=39.4

Q ss_pred             CCccEEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708           85 TKYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  135 (220)
Q Consensus        85 ~~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag  135 (220)
                      .+-|+|+|.||..-.  .......+.+.|++..++|++.++..+|+.+-...+
T Consensus        83 ~~~d~IyVgGGNTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~p~I  135 (224)
T COG3340          83 MKADIIYVGGGNTFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAGPTI  135 (224)
T ss_pred             hhccEEEECCchHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeecCce
Confidence            368999998886532  123456788999999999999999999997765543

>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=87.19  E-value=6.5  Score=32.89  Aligned_cols=95  Identities=17%  Similarity=0.134  Sum_probs=53.0

Q ss_pred             CCCCCCCCCeEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcC
Q 027708            1 MANSKGGKRSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNAT   78 (220)
Q Consensus         1 ~~~~~~~~~kI~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~   78 (220)
                      |++|+    +|+|+.-++-.. .+ +....+.|...|.++.+......                  ...........   
T Consensus         1 ~~~~~----~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~------------------~~~~~~~~~~~---   55 (295)
T PRK01231          1 MPSFR----NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAE------------------VLPGHGLQTVS---   55 (295)
T ss_pred             CCCCC----EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh------------------hcCcccccccc---
Confidence            55653    799998765532 22 33555667788888766432111                  00000000000   


Q ss_pred             cCCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHH
Q 027708           79 FDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL  129 (220)
Q Consensus        79 l~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~  129 (220)
                      ..+. ...+|.+++.||.|        .++..++.+...+.||.+|-.|-.
T Consensus        56 ~~~~-~~~~d~vi~~GGDG--------t~l~~~~~~~~~~~Pvlgin~G~l   97 (295)
T PRK01231         56 RKLL-GEVCDLVIVVGGDG--------SLLGAARALARHNVPVLGINRGRL   97 (295)
T ss_pred             hhhc-ccCCCEEEEEeCcH--------HHHHHHHHhcCCCCCEEEEeCCcc
Confidence            1111 13689999999855        334445656567888998888763

>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=85.79  E-value=1.6  Score=38.31  Aligned_cols=43  Identities=21%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL  131 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L  131 (220)
                      ..|.|+||||.+.+-   -+--+..++.+.+++.|..+||.|-++-
T Consensus       363 ~adGilvPGGFG~RG---veG~i~Aak~ARen~iP~LGiCLGmQ~A  405 (585)
T KOG2387|consen  363 SADGILVPGGFGDRG---VEGKILAAKWARENKIPFLGICLGMQLA  405 (585)
T ss_pred             cCCeEEeCCcccccc---hhHHHHHHHHHHhcCCCeEeeehhhhHH
Confidence            689999999998653   3344455566667899999999998764

>PRK11104 hemG protoporphyrinogen oxidase; Provisional

Probab=84.59  E-value=9.5  Score=29.20  Aligned_cols=41  Identities=17%  Similarity=0.237  Sum_probs=29.3

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHh--CCCeEEEEehH
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSN--SGKTIASICHG  127 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~--~g~~i~aic~G  127 (220)
                      .+||.||+.++....  .-.+.+.+|+++...  ++|+++..|.|
T Consensus        45 ~~yD~vIlGspi~~G--~~~~~~~~fl~~~~~~l~~K~v~~F~v~   87 (177)
T PRK11104         45 SDYDRVVIGASIRYG--HFHSALYKFVKKHATQLNQMPSAFFSVN   87 (177)
T ss_pred             HHCCEEEEECccccC--CcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            479998886643322  235788888877543  68999999977

>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional

Probab=84.39  E-value=10  Score=31.63  Aligned_cols=91  Identities=21%  Similarity=0.205  Sum_probs=50.6

Q ss_pred             CCeEEEEecCCCCc-hh-hHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708            8 KRSVLLLCGDYMED-YE-AMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT   85 (220)
Q Consensus         8 ~~kI~il~~~g~~~-~e-~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~   85 (220)
                      .++|+|+.-.+-.. .+ +......|+..|+++.+.......                 . .......   ....+. ..
T Consensus         5 ~~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~-----------------~-~~~~~~~---~~~~~~-~~   62 (291)
T PRK02155          5 FKTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARN-----------------I-GLTGYPA---LTPEEI-GA   62 (291)
T ss_pred             CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhh-----------------c-Ccccccc---cChhHh-cc
Confidence            46899998765532 22 445555677788876554221110                 0 0000000   011121 13


Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ  128 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~  128 (220)
                      .+|++|+.||.|        .+++.++.+...+.|+.+|-.|.
T Consensus        63 ~~d~vi~~GGDG--------t~l~~~~~~~~~~~pilGIn~G~   97 (291)
T PRK02155         63 RADLAVVLGGDG--------TMLGIGRQLAPYGVPLIGINHGR   97 (291)
T ss_pred             CCCEEEEECCcH--------HHHHHHHHhcCCCCCEEEEcCCC
Confidence            689999999855        44455666656678888887776

>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3

Probab=82.71  E-value=5.7  Score=31.19  Aligned_cols=60  Identities=23%  Similarity=0.386  Sum_probs=34.8

Q ss_pred             hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccc
Q 027708           22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL  101 (220)
Q Consensus        22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~  101 (220)
                      .++...+..|...|..+++++++.                                     +...|.+||+|+-.     
T Consensus        30 ~~~~~~y~al~~~gi~vDvv~~~~-------------------------------------dL~~Ykllv~P~~~-----   67 (207)
T PF08532_consen   30 DQVRGWYRALRELGIPVDVVSPDD-------------------------------------DLSGYKLLVLPSLY-----   67 (207)
T ss_dssp             HHHHHHHHHHHTTT--EEEE-TTS---------------------------------------TT-SEEEES--S-----
T ss_pred             HHHHHHHHHHHHcCCceEEecCcC-------------------------------------CcccCcEEEEeeEE-----
Confidence            456778889999999999987631                                     12369999999732     


Q ss_pred             cCChHHHHHHHHHHhCCCeEEE
Q 027708          102 AMNDSVIDLVRKFSNSGKTIAS  123 (220)
Q Consensus       102 ~~~~~l~~~l~~~~~~g~~i~a  123 (220)
                      .-++++.+.|+++.++|..+..
T Consensus        68 ~l~~~~~~~L~~yV~~GG~li~   89 (207)
T PF08532_consen   68 ILSPEFAERLRAYVENGGTLIL   89 (207)
T ss_dssp             C--HHH---HHHHHT-SS-EEE
T ss_pred             EEChHHHHHHHHHHHCCCEEEE
Confidence            3578899999999998766553

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=82.22  E-value=2.2  Score=36.14  Aligned_cols=48  Identities=29%  Similarity=0.464  Sum_probs=37.4

Q ss_pred             CccEEEEcCCC--Cc-ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           86 KYDGLVIPGGR--AP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        86 ~~D~liipGG~--~~-~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      ..|-||+||-.  ++ .+.....-+.+-|++....|||+.+||.|-..|-.
T Consensus        39 ~a~rLIfPGVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~   89 (541)
T KOG0623|consen   39 NADRLIFPGVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFD   89 (541)
T ss_pred             cCceEeecCcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhc
Confidence            57889999832  22 22345677889999999999999999999998854

>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain

Probab=81.90  E-value=13  Score=27.49  Aligned_cols=62  Identities=23%  Similarity=0.374  Sum_probs=45.3

Q ss_pred             hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccc
Q 027708           22 YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYL  101 (220)
Q Consensus        22 ~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~  101 (220)
                      .++...+..|...|..+++++++.                                   +  ..+|++||+|.-..    
T Consensus        26 ~~~~~~~~~l~~~gi~~d~v~~~~-----------------------------------~--l~~y~~vi~P~~~~----   64 (154)
T cd03143          26 DLALALYRALRELGIPVDVVPPDA-----------------------------------D--LSGYKLVVLPDLYL----   64 (154)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCC-----------------------------------C--cccCCEEEECchhc----
Confidence            567788888888898888876421                                   1  12799999997532    


Q ss_pred             cCChHHHHHHHHHHhCCCeEEEEe
Q 027708          102 AMNDSVIDLVRKFSNSGKTIASIC  125 (220)
Q Consensus       102 ~~~~~l~~~l~~~~~~g~~i~aic  125 (220)
                       ..+...+.|+++.++|..+.+-+
T Consensus        65 -~~~~~~~~l~~~v~~GG~li~~~   87 (154)
T cd03143          65 -LSDATAAALRAYVENGGTLVAGP   87 (154)
T ss_pred             -CCHHHHHHHHHHHHCCCEEEEec
Confidence             35688899999999888666533

A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.

>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional

Probab=80.35  E-value=25  Score=29.38  Aligned_cols=91  Identities=13%  Similarity=0.127  Sum_probs=51.2

Q ss_pred             CCeEEEEecCCCC-chhh-HHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708            8 KRSVLLLCGDYME-DYEA-MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT   85 (220)
Q Consensus         8 ~~kI~il~~~g~~-~~e~-~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~   85 (220)
                      +++|+|+.-.+-. ..++ ....+.|.+.|.++.+......                 ..    +........+.+. ..
T Consensus         5 ~~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~-----------------~~----~~~~~~~~~~~~~-~~   62 (292)
T PRK03378          5 FKCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAH-----------------EL----QLKNVKTGTLAEI-GQ   62 (292)
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhh-----------------hc----Ccccccccchhhc-CC
Confidence            4789999765443 2223 3455668788887765432110                 00    0000000011222 23


Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHH
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ  128 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~  128 (220)
                      +.|.+++.||.|        .++..++.+...+.||.+|-.|.
T Consensus        63 ~~d~vi~lGGDG--------T~L~aa~~~~~~~~Pilgin~G~   97 (292)
T PRK03378         63 QADLAIVVGGDG--------NMLGAARVLARYDIKVIGINRGN   97 (292)
T ss_pred             CCCEEEEECCcH--------HHHHHHHHhcCCCCeEEEEECCC
Confidence            689999999855        44455566666678999998887

>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins

Probab=80.15  E-value=7  Score=25.92  Aligned_cols=27  Identities=15%  Similarity=0.004  Sum_probs=20.2

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC   42 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s   42 (220)
                      |||+|       +..+....+.|+..||+|.-+.
T Consensus         2 kkIAV-------E~~Ls~v~~~L~~~GyeVv~l~   28 (80)
T PF03698_consen    2 KKIAV-------EEGLSNVKEALREKGYEVVDLE   28 (80)
T ss_pred             CeEEe-------cCCchHHHHHHHHCCCEEEecC
Confidence            56765       4467788999999999875543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	220
3uk7_A	396	Crystal Structure Of Arabidopsis Thaliana Dj-1d Len		2e-85
1g2i_A	166	Crystal Structure Of A Novel Intracellular Protease		1e-25
3l18_A	168	Ton1285, An Intracellular Protease From Thermococcu		4e-23
1oi4_A	193	Crystal Structure Of Yhbo From Escherichia Coli Len		7e-19
2vrn_A	190	The Structure Of The Stress Response Protein Dr1199		4e-14
3fse_A	365	Crystal Structure Of A Two-Domain Protein Containin		5e-13
4e08_A	190	Crystal Structure Of Drosophila Melanogaster Dj-1be		3e-08
3nor_A	231	Crystal Structure Of T102s Isocyanide Hydratase Fro		2e-05
3nov_A	231	Crystal Structure Of D17e Isocyanide Hydratase From		2e-05
3noo_A	231	Crystal Structure Of C101a Isocyanide Hydratase Fro		3e-04
3noq_A	231	Crystal Structure Of C101s Isocyanide Hydratase Fro		3e-04
3non_A	231	Crystal Structure Of Isocyanide Hydratase From Pseu		4e-04

>pdb|3UK7|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dj-1d Length = 396

Iteration: 1
 Score =  311 bits (796), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/207 (71%), Positives = 170/207 (82%), Gaps = 1/207 (0%)
Query: 4   SKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQ 63
           S    R+VL+LCGDY EDYE  VPFQAL AFG++V   CPGKK+GD CPTAVH   GHQ 
Sbjct: 8   SXANSRTVLILCGDYXEDYEVXVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQ- 66
Query: 64  TYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIAS 123
           TY E+RGHNF LNATFDE+D +KYDGLVIPGGRAPEYLA+  SV++LV++FS SGK IAS
Sbjct: 67  TYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIAS 126
Query: 124 ICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGH 183
           I HGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATYEGH
Sbjct: 127 IXHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATYEGH 186
Query: 184 PEFIRLFLKALGGTITGSDKRILFLCG 210
           PEFI+LF+KALGG ITG++KRILFLCG
Sbjct: 187 PEFIQLFVKALGGKITGANKRILFLCG 213

>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From Pyrococcus Horikoshii At 2 A Resolution Length = 166

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 25/185 (13%)
Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
            VL L  +  ED E + P+  L             K+ G      V+ ++  + T +   
Sbjct: 2   KVLFLTANEFEDVELIYPYHRL-------------KEEGH----EVYIASFERGTITGKH 44
Query: 70  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
           G++  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  
Sbjct: 45  GYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKXFSEGKPVASICHGPQ 104
Query: 130 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGAT----YEGHPE 185
           IL +A V++GRK T+YP +K   I AG  W++ E     VVDGN ++       Y    E
Sbjct: 105 ILISAGVLRGRKGTSYPGIKDDXINAGVEWVDAE----VVVDGNWVSSRVPADLYAWXRE 160
Query: 186 FIRLF 190
           F++L 
Sbjct: 161 FVKLL 165

>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus Onnurineus Na1 Length = 168

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 29/187 (15%)
Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAAC--PGKKSGDVCPTAVHQSTGHQQTYSE 67
            VL L  D  ED E + P   +   G  V  A    GK +G                   
Sbjct: 4   KVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITG------------------- 44
Query: 68  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127
             G++  ++ TF+E+DP ++D LV+PGG+APE + +N+  + + R+     K +ASICHG
Sbjct: 45  KHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHG 104
Query: 128 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYEGH 183
             IL +A V+KGR+ T+   ++  +I AGA WI+ E     VVDGN ++    G  Y   
Sbjct: 105 PQILISAKVLKGRRGTSTITIRDDVINAGAEWIDAE----VVVDGNWVSSRHPGDLYAWM 160
Query: 184 PEFIRLF 190
            EF++L 
Sbjct: 161 REFVKLL 167

>pdb|1OI4|A Chain A, Crystal Structure Of Yhbo From Escherichia Coli Length = 193

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 11/126 (8%)
Query: 75  LNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA 134
           ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  +L +A
Sbjct: 75  IDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134
Query: 135 DVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGN-IITGATYEGHPEFIRLF 190
           DV++GRK TA   VKP++I    AGA + + E     VVD + ++T  T +  P F R  
Sbjct: 135 DVIRGRKLTA---VKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLPAFNREA 187
Query: 191 LKALGG 196
           L+ LG 
Sbjct: 188 LRLLGA 193

>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From Deinococcus Radiodurans: A Member Of The Dj-1 Superfamily Length = 190

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 27/184 (14%)
Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFG-----VSVDAACPGKKSGDVCPTAVHQSTGHQQ 63
           + + +L  D +E+ E   P  A+ A G     +S++        GD+ P         Q+
Sbjct: 10  KKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEP---------QE 60
Query: 64  TYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIA 122
            Y         ++    E+  + YDGL++PGG   P+ L + +  +  VR   ++GK IA
Sbjct: 61  KYR--------VDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIA 112
Query: 123 SICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEG 182
           +I HG   L+   + +G K T++  +K  L  AGA W++ E    CV D  ++T    + 
Sbjct: 113 AIXHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEE----CVTDKGVVTSRKPDD 168
Query: 183 HPEF 186
            P F
Sbjct: 169 LPAF 172

>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 365

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 21/175 (12%)
Query: 3   NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
           ++  GK+ V +L    +ED E ++P   L   G  V                V   +   
Sbjct: 5   HNNSGKKKVAILIEQAVEDTEFIIPCNGLKQAGFEV----------------VVLGSRXN 48
Query: 63  QTYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 121
           + Y   RG  +   + T  E   +++D +VIPGG AP+    N + +  V++    GK +
Sbjct: 49  EKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGXAPDKXRRNPNTVRFVQEAXEQGKLV 108
Query: 122 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT 176
           A++ HG  +L   D+++G++ T +  +      AGA +++     A VVDGN+IT
Sbjct: 109 AAVXHGPQVLIEGDLLRGKQATGFIAISKDXXNAGADYLDE----ALVVDGNLIT 159

>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta Length = 190

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 11/112 (9%)
Query: 76  NATFDEIDPTKYDGLVIPGGRAPEYLAMNDS--VIDLVRKFSNSGKTIASICHGQLILAA 133
           + +  ++   K+D +V+PGG      AM +S  V DL+R   + G  IA+IC    +LA 
Sbjct: 57  DTSLAQVASDKFDVVVLPGGLGGSN-AMGESSLVGDLLRSQESGGGLIAAICAAPTVLAK 115
Query: 134 ADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIIT----GATYE 181
             V  G+  T+YP +KP L+    S+++ +T+   V DGN+IT    G  YE
Sbjct: 116 HGVASGKSLTSYPSMKPQLV-NNYSYVDDKTV---VKDGNLITSRGPGTAYE 163

>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 73  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 132
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+C G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCSGSLVLG 111
Query: 133 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 177
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 73  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 132
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+C G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTGSLVLG 111
Query: 133 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 177
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 73  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 132
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVATGSLVLG 111
Query: 133 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 177
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 73  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 132
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLG 111
Query: 133 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 177
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas Fluorescens Length = 231

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Query: 73  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 132
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVXTGSLVLG 111
Query: 133 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 177
           AA +++G++ T +     +L   GA  +        V DGN++TG
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGAIPVHER----VVRDGNLLTG 152

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	2e-87
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	5e-81
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	2e-72
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	5e-72
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	2e-71
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	7e-70
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	1e-44
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	2e-36
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	5e-34
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	2e-33
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	9e-33
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	1e-32
2fex_A	188	Conserved hypothetical protein; structural genomic	2e-30
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	2e-30
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	3e-30
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	7e-29
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	3e-26
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	3e-24
1u9c_A	224	APC35852; structural genomics, protein structure i	3e-23
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	3e-21
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	3e-19
3n7t_A	247	Macrophage binding protein; seattle structural gen	4e-18
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	4e-18
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	5e-14
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	3e-13
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	1e-12
3gra_A	202	Transcriptional regulator, ARAC family; transcript	1e-08
3er6_A	209	Putative transcriptional regulator protein; struct	1e-08

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  262 bits (671), Expect = 2e-87
 Identities = 150/210 (71%), Positives = 172/210 (81%), Gaps = 2/210 (0%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
             +    +  VL+LCGDYMEDYE MVPFQAL AFG++V   CPGKK+GD CPTAVH   G
Sbjct: 6   RGSMANSRT-VLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCG 64

Query: 61  HQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKT 120
           HQ TY E+RGHNF LNATFDE+D +KYDGLVIPGGRAPEYLA+  SV++LV++FS SGK 
Sbjct: 65  HQ-TYFESRGHNFTLNATFDEVDLSKYDGLVIPGGRAPEYLALTASVVELVKEFSRSGKP 123

Query: 121 IASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY 180
           IASICHGQLILAAAD V GRKCTAY  V P L+AAGA W+EP T   CVVDG++IT ATY
Sbjct: 124 IASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDVCVVDGSLITAATY 183

Query: 181 EGHPEFIRLFLKALGGTITGSDKRILFLCG 210
           EGHPEFI+LF+KALGG ITG++KRILFLCG
Sbjct: 184 EGHPEFIQLFVKALGGKITGANKRILFLCG 213

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana} Length = 396

 Score =  246 bits (629), Expect = 5e-81
 Identities = 109/192 (56%), Positives = 139/192 (72%), Gaps = 1/192 (0%)

Query: 8   KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSE 67
            + +L LCGDYMEDYE  VPFQ+L A G  VDA CP KK+GD CPTA+H   G Q TYSE
Sbjct: 205 NKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQ-TYSE 263

Query: 68  TRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127
             GH FAL   FD++  + YD LVIPGGRAPEYLA+N+ V+++V++F NS K +ASICHG
Sbjct: 264 KPGHTFALTTNFDDLVSSSYDALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHG 323

Query: 128 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 187
           Q ILAAA V+KGRKCTAYP VK  ++  G +W+EP+ +  C  DGN++TGA + GHPEF+
Sbjct: 324 QQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDRCFTDGNLVTGAAWPGHPEFV 383

Query: 188 RLFLKALGGTIT 199
              +  LG  ++
Sbjct: 384 SQLMALLGIQVS 395

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} PDB: 1g2i_A Length = 168

 Score =  216 bits (552), Expect = 2e-72
 Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 22/188 (11%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYS 66
             + VL L  D  ED E + P   +   G  V  A   +                    +
Sbjct: 2   SMK-VLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-----------------KIT 43

Query: 67  ETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126
              G++  ++ TF+E+DP ++D LV+PGG+APE + +N+  + + R+     K +ASICH
Sbjct: 44  GKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICH 103

Query: 127 GQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF 186
           G  IL +A V+KGR+ T+   ++  +I AGA WI+    A  VVDGN ++         +
Sbjct: 104 GPQILISAKVLKGRRGTSTITIRDDVINAGAEWID----AEVVVDGNWVSSRHPGDLYAW 159

Query: 187 IRLFLKAL 194
           +R F+K L
Sbjct: 160 MREFVKLL 167

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans} Length = 190

 Score =  216 bits (552), Expect = 5e-72
 Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 18/205 (8%)

Query: 1   MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG 60
            A    GK+ + +L  D +E+ E   P  A+ A G + +               +    G
Sbjct: 3   KAKDLTGKK-IAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-------EIQSMKG 54

Query: 61  HQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGK 119
                       + ++    E+  + YDGL++PGG   P+ L + +  +  VR   ++GK
Sbjct: 55  DI-----EPQEKYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGK 109

Query: 120 TIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGAT 179
            IA+ICHG   L+   + +G K T++  +K  L  AGA W++      CV D  ++T   
Sbjct: 110 PIAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVD----EECVTDKGVVTSRK 165

Query: 180 YEGHPEFIRLFLKALGGTITGSDKR 204
            +  P F +  ++        S ++
Sbjct: 166 PDDLPAFNKKIVEEFAEGDHSSRRK 190

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413} Length = 365

 Score =  220 bits (563), Expect = 2e-71
 Identities = 52/199 (26%), Positives = 88/199 (44%), Gaps = 22/199 (11%)

Query: 3   NSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQ 62
           N+ G K+ V +L    +ED E ++P   L   G  V                        
Sbjct: 6   NNSGKKK-VAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMN---------------- 48

Query: 63  QTYSETRGH-NFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTI 121
           + Y   RG  +   + T  E   +++D +VIPGG AP+ +  N + +  V++    GK +
Sbjct: 49  EKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLV 108

Query: 122 ASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYE 181
           A++CHG  +L   D+++G++ T +  +   ++ AGA +++     A VVDGN+IT     
Sbjct: 109 AAVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLD----EALVVDGNLITSREPG 164

Query: 182 GHPEFIRLFLKALGGTITG 200
               F    L  LG     
Sbjct: 165 DLAIFTTAILSRLGYGGKD 183

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Length = 193

 Score =  210 bits (538), Expect = 7e-70
 Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 20/187 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG 70
           + +L  D  ED E   P       G  V                       +    +   
Sbjct: 26  IAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAG---------------KTVKGKKGE 70

Query: 71  HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 130
            +  ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG  +
Sbjct: 71  ASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQL 130

Query: 131 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN-IITGATYEGHPEFIRL 189
           L +ADV++GRK TA  P+   +  AGA + + E     VVD + ++T  T +  P F R 
Sbjct: 131 LISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE----VVVDKDQLVTSRTPDDLPAFNRE 186

Query: 190 FLKALGG 196
            L+ LG 
Sbjct: 187 ALRLLGA 193

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Length = 175

 Score =  145 bits (369), Expect = 1e-44
 Identities = 31/196 (15%), Positives = 61/196 (31%), Gaps = 31/196 (15%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYS 66
            K+ V +L  + +         +A    G+S                         +   
Sbjct: 2   AKK-VAVLAVNPVNGCGLFQYLEAFFENGISYKVFAVSDT----------------KEIK 44

Query: 67  ETRGHNFALNATFDEI--DPTKYDGLVIPGGRAP------EYLAMNDSVIDLVRKFSNSG 118
              G    ++     +     ++D LV   G A            N  ++++++ F   G
Sbjct: 45  TNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKG 104

Query: 119 KTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 178
           K +   C G ++     + KG+K   +P  KP +    A+           +DGN  T  
Sbjct: 105 KMMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQNGIATD------EKSEIDGNFFTAQ 158

Query: 179 TYEGHPEFIRLFLKAL 194
                   +   ++AL
Sbjct: 159 DENTIWTMLPKVIEAL 174

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster} Length = 190

 Score =  125 bits (316), Expect = 2e-36
 Identities = 44/190 (23%), Positives = 74/190 (38%), Gaps = 21/190 (11%)

Query: 8   KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSE 67
            +S L++     E+ E ++    L   G+ V  A                     +    
Sbjct: 5   SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVA----------------GLNGGEAVKC 48

Query: 68  TRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICH 126
           +R      + +  ++   K+D +V+PGG      +  +  V DL+R   + G  IA+IC 
Sbjct: 49  SRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICA 108

Query: 127 GQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF 186
              +LA   V  G+  T+YP +KP L+   +   +       V DGN+IT        EF
Sbjct: 109 APTVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDD----KTVVKDGNLITSRGPGTAYEF 164

Query: 187 IRLFLKALGG 196
                + L G
Sbjct: 165 ALKIAEELAG 174

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Length = 208

 Score =  120 bits (302), Expect = 5e-34
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 23/173 (13%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYS 66
            KR +L+      E+ E ++    L+  G  V  A                + G +    
Sbjct: 9   SKR-ILVPVAHGSEEMETVIIVDTLVRAGFQVTMA----------------AVGDKLQVQ 51

Query: 67  ETRGHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASIC 125
            +RG       T +      +D L +PGG    +  A + +++ L+  FS  GK +A+IC
Sbjct: 52  GSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAIC 111

Query: 126 HG-QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 177
               L+ A      G + T +P     + +   S              +++T 
Sbjct: 112 ATPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQR----VCYYATQHLLTS 160

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis} Length = 212

 Score =  118 bits (297), Expect = 2e-33
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 25/196 (12%)

Query: 8   KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSE 67
            +   L   + M D+E       L                 D+ P  V        T   
Sbjct: 5   TKKAFLYVFNTMSDWEYGYLIAEL---------NSGRYFKKDLAPLKVI-------TVGA 48

Query: 68  TRG-----HNFALNA--TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKT 120
            +          +    + DE      D L++PGG       ++  +++ + +    G  
Sbjct: 49  NKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTTWS-EEIHQPILERIGQALKIGTI 107

Query: 121 IASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATY 180
           +A+IC     LA    +  RK T+       ++       +   +   V D N++T +  
Sbjct: 108 VAAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYELGPAVSDANLVTASGI 167

Query: 181 EGHPEFIRLFLKALGG 196
               EF    LK +  
Sbjct: 168 -APLEFAMEVLKKIDV 182

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis} Length = 242

 Score =  117 bits (294), Expect = 9e-33
 Identities = 38/193 (19%), Positives = 67/193 (34%), Gaps = 19/193 (9%)

Query: 7   GKRSVLLLCG----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG-H 61
              S ++L G    D  E  EA++    L    V+     P K    V      +S G  
Sbjct: 23  ALNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEV 82

Query: 62  QQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGR------------APEYLAMNDSVID 109
           +    E+           ++I   ++D LVIPGG               E   +     +
Sbjct: 83  RNILVESARIARGSVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKN 142

Query: 110 LVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC 168
            VR+F N+ K I ++C    ++ A    +   K T       ++   G   ++  T+ + 
Sbjct: 143 AVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVTIGEDSNGLIDKMGGVHVDCPTIKSV 202

Query: 169 VV-DGNIITGATY 180
                 I + + Y
Sbjct: 203 KDDVNRIFSCSAY 215

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ... Length = 197

 Score =  115 bits (291), Expect = 1e-32
 Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 22/173 (12%)

Query: 7   GKRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYS 66
            KR  L++     E+ E ++P   +   G+ V  A                    +    
Sbjct: 3   SKR-ALVILAKGAEEMETVIPVDVMRRAGIKVTVA----------------GLAGKDPVQ 45

Query: 67  ETRGHNFALNATFDEIDPT-KYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASI 124
            +R      +A+ ++      YD +V+PGG    + L+ + +V +++++  N    IA+I
Sbjct: 46  CSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATI 105

Query: 125 CHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 177
           C G   L A ++  G K T +P  K  ++  G              DG I+T 
Sbjct: 106 CAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN---RVEKDGLILTS 155

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2 Length = 188

 Score =  110 bits (276), Expect = 2e-30
 Identities = 39/189 (20%), Positives = 59/189 (31%), Gaps = 24/189 (12%)

Query: 11  VLLLCGDYMEDYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
           + +       D+E  +   A     GV +  A P           V              
Sbjct: 4   IAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-------PVTSM----------- 45

Query: 70  GHNFALNA--TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHG 127
                +    ++D +DP   D LVIPGG + E       +  LV++F +  + +A IC  
Sbjct: 46  -GGLKVTPDTSYDALDPVDIDALVIPGGLSWE-KGTAADLGGLVKRFRDRDRLVAGICAA 103

Query: 128 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 187
              L    V+     T           A             V DG ++T A       F 
Sbjct: 104 ASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFA 162

Query: 188 RLFLKALGG 196
              LK+LG 
Sbjct: 163 VEILKSLGL 171

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A Length = 194

 Score =  110 bits (277), Expect = 2e-30
 Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 26/174 (14%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG 70
           V L   D  ++ E   P+       + +D+   G+                 +    +R 
Sbjct: 7   VCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGE--------------NKDRLVKMSRD 52

Query: 71  HNFALNATFDEIDPT-----KYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNS-GKTIAS 123
                N ++ EI        +YD  +IPGG    + L+    V  +V++F     K I  
Sbjct: 53  VEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGM 112

Query: 124 ICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 177
           IC G  + A    +  ++ T +P V+  L   G  +++       V++ N+IT 
Sbjct: 113 ICAG-TLTAKTSGLPNKQITGHPSVRGQLEEGGYKYLD----QPVVLEENLITS 161

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Length = 205

 Score =  110 bits (276), Expect = 3e-30
 Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 24/172 (13%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
           S L+      E+ EA+     L+  G+ V  A                ++      + +R
Sbjct: 4   SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASV--------------ASDGNLAITCSR 49

Query: 70  GHNFALNATFDEIDPTKYDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHG- 127
           G     +A   E+   +YD +V+PGG    E    +  +++ V++F  SG+ +A+IC   
Sbjct: 50  GVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAP 109

Query: 128 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNI--ITG 177
             +L   D+      T +P +K  +      W++       V D  +  +T 
Sbjct: 110 ATVLVPHDIFPIGNMTGFPTLKDKI--PAEQWLD----KRVVWDARVKLLTS 155

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis} Length = 206

 Score =  106 bits (266), Expect = 7e-29
 Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 32/193 (16%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSE 67
           +  L L  D   D+E +    AL      SV                V            
Sbjct: 4   KKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPI--------VSSI--------- 46

Query: 68  TRGHNFALNA-TFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH 126
                F  +      ++P  ++ LV+ GG    +   N  ++  V+        IA+IC 
Sbjct: 47  ---GGFKTSVDYIIGLEPANFNLLVMIGG--DSWSNDNKKLLHFVKTAFQKNIPIAAICG 101

Query: 127 GQLILAAADVVKGRKCTAYPPVKPVLI---AAGASWIEPETMAACVVDGNIITGATYEGH 183
               LA   ++     T                +S++E       V D N++T       
Sbjct: 102 AVDFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVE----KQAVRDKNLVTANGT-AP 156

Query: 184 PEFIRLFLKALGG 196
            EF  L L+ +  
Sbjct: 157 IEFTNLILEMIDF 169

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Length = 232

 Score =  100 bits (249), Expect = 3e-26
 Identities = 35/192 (18%), Positives = 60/192 (31%), Gaps = 18/192 (9%)

Query: 7   GKRSVLLLCG----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTG-H 61
            K+  ++L G    D  E +EA++   A+   G       P K+  DV      ++    
Sbjct: 6   MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTET 65

Query: 62  QQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAP-----------EYLAMNDSVIDL 110
           +    E             + D  + D L++PGG                  ++  +  L
Sbjct: 66  RNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKAL 125

Query: 111 VRKFSNSGKTIASICHGQLILAAADVVKGR-KCTAYPPVKPVLIAAGASWIEPETMAACV 169
            +    +GK +  +C    +L        R           VL   GA  +        V
Sbjct: 126 AQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVV 185

Query: 170 -VDGNIITGATY 180
             D  I+T   Y
Sbjct: 186 DEDNKIVTTPAY 197

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Length = 291

 Score = 96.2 bits (239), Expect = 3e-24
 Identities = 35/246 (14%), Positives = 67/246 (27%), Gaps = 43/246 (17%)

Query: 2   ANSKGGKRSVLLLC--GDYMEDY------------EAMVPFQALLAFGVSVDAACPGKKS 47
                GK  +L++     Y+               E ++P   L A G   + A      
Sbjct: 42  PKPYRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLM 101

Query: 48  GDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK-----YDGLVIPGGRAPEY-L 101
                 A+         + E     F       ++  +      Y  + +PGG      L
Sbjct: 102 TKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGL 161

Query: 102 AMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD----VVKGRKCTAYPP---------- 147
             +  V   ++    + + + S+CHG     A       + G    A+P           
Sbjct: 162 PESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTPEIG 221

Query: 148 ---------VKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI 198
                        L   G + I  +       D  ++TG +        +L  + +    
Sbjct: 222 YMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAY 281

Query: 199 TGSDKR 204
            G +  
Sbjct: 282 AGLEHH 287

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Length = 224

 Score = 92.1 bits (229), Expect = 3e-23
 Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 27/195 (13%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEI 82
           E  VP+      G  V  A    + G+       +S   +              A   + 
Sbjct: 30  EFAVPYLVFQEKGYDVKVASI--QGGE--VPLDPRSINEKDPSWAEAEAALKHTARLSKD 85

Query: 83  DPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------ 135
           D   +D + +PGG    +    N+++  ++++F+  G+ IA++CHG   L  A       
Sbjct: 86  DAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTP 145

Query: 136 VVKGRKCTAYP---------------PVKPVLIAAGASWIEPETMAA-CVVDGNIITGAT 179
           +VKG+  T++                 ++  L   GA+++         V DGN+ITG  
Sbjct: 146 IVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQN 205

Query: 180 YEGHPEFIRLFLKAL 194
            +         + AL
Sbjct: 206 PQSSRSTAEKVVAAL 220

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4} Length = 236

 Score = 87.3 bits (217), Expect = 3e-21
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 77  ATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADV 136
               E+     D ++I  G      A+ D       K   S + I SIC G  +L    +
Sbjct: 73  GHVSEVKE--QDVVLITSGYRGIPAALQDENFMSALKLDPSRQLIGSICAGSFVLHELGL 130

Query: 137 VKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 178
           +KG+K T  P  K VL   G    +       V++GNI T  
Sbjct: 131 LKGKKLTTNPDAKAVLQGMGGDVQD----LPLVIEGNIATAG 168

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Length = 243

 Score = 82.4 bits (203), Expect = 3e-19
 Identities = 35/213 (16%), Positives = 64/213 (30%), Gaps = 36/213 (16%)

Query: 16  GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSG----DVCPTAVHQSTG-HQQTYSETRG 70
           G ++   EA+ PF      G  VD      K G     +    ++       +       
Sbjct: 25  GVFVV--EALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN 82

Query: 71  HNFALNATFDEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQL 129
              A   T  E++   Y       G    +       + D+  +   +G  +A++CHG  
Sbjct: 83  KTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPA 142

Query: 130 ILAAA-------DVVKGRKCTAYP-------------------PVKPVLIAAGASWIEPE 163
           I            +++G+  T +                     V+ V    GA ++ P 
Sbjct: 143 IFDGLTDKKTGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPV 202

Query: 164 TMAAC--VVDGNIITGATYEGHPEFIRLFLKAL 194
                  + DG ++TG             + AL
Sbjct: 203 GPWDDYSITDGRLVTGVNPASAHSTAVRSIDAL 235

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} Length = 247

 Score = 79.3 bits (195), Expect = 4e-18
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 34/210 (16%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSG----DVCPTAVHQSTGHQQTYSETRGHNFALNAT 78
           EA+ PF  L A G  VD A      G     +    + +                     
Sbjct: 36  EALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQV 95

Query: 79  F--DEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD 135
           F   ++ P  Y  + + GG    Y       + ++ +     G  I ++CHG  +L    
Sbjct: 96  FKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIH 155

Query: 136 ------VVKGRKCTAYP-------------------PVKPVLIAAGASWIEPETMAA--C 168
                 V+K +  T +                     +  +   A A ++ PE      C
Sbjct: 156 DENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFC 215

Query: 169 VVDGNIITGATYEGHPEFIRLFLKALGGTI 198
            VDG I+TGA  +      R  +K   G +
Sbjct: 216 KVDGRIVTGANPQSATNTARDTIKVYEGIV 245

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A* Length = 244

 Score = 79.0 bits (194), Expect = 4e-18
 Identities = 37/206 (17%), Positives = 65/206 (31%), Gaps = 34/206 (16%)

Query: 23  EAMVPFQALLAFGVSVDAACP-GKKSGD----VCPTAVHQSTGHQQTYSETRGHNFALNA 77
           E +  F      G  VD     G    D           +   + +T +       A   
Sbjct: 30  EILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIK 89

Query: 78  TFDEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-- 134
           T +E++ + Y       G    +      ++ D+  K   +G  IA+ICHG L+      
Sbjct: 90  TANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLID 149

Query: 135 -----DVVKGRKCTAYP-------------------PVKPVLIAAGASWIEPETMAAC-- 168
                 +++G+  T +P                    V+ V    GA ++ P        
Sbjct: 150 IKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYS 209

Query: 169 VVDGNIITGATYEGHPEFIRLFLKAL 194
           + DG ++TG             + AL
Sbjct: 210 ITDGKLVTGVNANSSYSTTIRAINAL 235

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum} Length = 211

 Score = 67.2 bits (165), Expect = 5e-14
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 63  QTYSETRG-----HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNS 117
              S   G         +  +    D      L +PGG        +D+ I+ +      
Sbjct: 37  NFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGSGTREKVNDDNFINFIGNMVKE 96

Query: 118 GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITG 177
            K I S+C G  +L+ A ++ G++ T        +       +     A  V DGNI T 
Sbjct: 97  SKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNED-VLWVKEARWVKDGNIYTS 155

Query: 178 A 178
           +
Sbjct: 156 S 156

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A Length = 231

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 73  FALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILA 132
             L AT    D    D + IPGG     L  +   +  +R+ +   + + S+  G L+L 
Sbjct: 52  LVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLG 111

Query: 133 AADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 178
           AA +++G++ T +     +L   GA  I        V DGN++TG 
Sbjct: 112 AAGLLQGKRATTHWAYHELLAPLGA--IPVH--ERVVRDGNLLTGG 153

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV} Length = 253

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 37/103 (35%), Positives = 46/103 (44%), Gaps = 6/103 (5%)

Query: 77  ATFDEIDPTKYDGLVIPGGRAPEYLAMND-SVIDLVRKFSNSGKTIASICHGQLILAAAD 135
           ATF    P     L  PGG      A +D   +  +       K I S+C G LIL AA 
Sbjct: 76  ATFGTC-PRDLTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAG 134

Query: 136 VVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 178
           ++KG K T++   +  L   GA  I  E  A  V D N ITGA
Sbjct: 135 LLKGYKATSHWSCRDALAGFGA--IPTE--ARVVRDRNRITGA 173

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida} Length = 202

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 26/107 (24%)

Query: 83  DPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKC 142
              + D LV+ GG           +  L+   +  G  +  + +G   L  A V+    C
Sbjct: 68  ALKELDLLVVCGGLRTP--LKYPELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGC 125

Query: 143 T-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 178
           +             P  +          I P +     +D + ++ A
Sbjct: 126 SIHPEQRASLSERSPQTR----------ITPASF---TLDRDRLSAA 159

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus} Length = 209

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 18/119 (15%), Positives = 41/119 (34%), Gaps = 25/119 (21%)

Query: 73  FALNATFDEIDPTKYDGLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 130
            ++  T         + L+I     P      ++ ++ D +R+    G  I +I  G  +
Sbjct: 61  ISVQPTAQWQSFDFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFV 120

Query: 131 LAAADVVKGRKCT-----------AYPPVKPVLIAAGASWIEPETMAACVVDGNIITGA 178
           +A A +++  K              +P +           +  E     ++DGN+   +
Sbjct: 121 VAKAGLLQQNKAVMHSYFAHLFGELFPEIM----------LMTEQK--ALIDGNVYLSS 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
4hcj_A	177	THIJ/PFPI domain protein; structural genomics, PSI	100.0
3efe_A	212	THIJ/PFPI family protein; structural GEN csgid, ce	100.0
3er6_A	209	Putative transcriptional regulator protein; struct	100.0
3ewn_A	253	THIJ/PFPI family protein; monomer, PSI nysgrc, str	100.0
3l18_A	168	Intracellular protease I; gatase1_PFPI_LIKE, hydro	100.0
3noq_A	231	THIJ/PFPI family protein; DJ-1 superfamily, isocya	100.0
3gra_A	202	Transcriptional regulator, ARAC family; transcript	100.0
4e08_A	190	DJ-1 beta; flavodoxin-like fold, stress response,	100.0
3mgk_A	211	Intracellular protease/amidase related enzyme (THI	100.0
3ot1_A	208	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate	100.0
2vrn_A	190	Protease I, DR1199; cysteine sulfenic acid, DJ-1/T	100.0
4gdh_A	194	DJ-1, uncharacterized protein C22E12.03C; unknown	100.0
1oi4_A	193	Hypothetical protein YHBO; PFPI/THIJ family, compl	100.0
2rk3_A	197	Protein DJ-1; parkinson'S disease, THIJ, PFPI, cha	100.0
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	100.0
3f5d_A	206	Protein YDEA; unknow protein, PSI-II, nysgrc, stru	100.0
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	100.0
2ab0_A	205	YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase	100.0
2fex_A	188	Conserved hypothetical protein; structural genomic	100.0
3bhn_A	236	THIJ/PFPI domain protein; structural genomics, joi	100.0
1u9c_A	224	APC35852; structural genomics, protein structure i	100.0
3uk7_A	396	Class I glutamine amidotransferase-like domain-CO	100.0
3cne_A	175	Putative protease I; structural genomics, PSI-2, M	100.0
3kkl_A	244	Probable chaperone protein HSP33; peptidase, heat	100.0
1rw7_A	243	YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI supe	100.0
3n7t_A	247	Macrophage binding protein; seattle structural gen	100.0
1n57_A	291	Chaperone HSP31, protein YEDU; alpha-beta sandwich	100.0
1vhq_A	232	Enhancing lycopene biosynthesis protein 2; structu	100.0
3l3b_A	242	ES1 family protein; ssgcid, NIH, niaid, SBRI, UW,	99.97
1sy7_A	715	Catalase 1; heme oxidation, singlet oxygen, oxidor	99.91
3ttv_A	753	Catalase HPII; heme orientation, oxidoreductase; H	99.83
2iuf_A	688	Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Pen	99.71
3ej6_A	688	Catalase-3; heme, hydrogen iron, metal-binding, ox	99.66
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	99.25
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	98.57
3m3p_A	250	Glutamine amido transferase; structural genomics,	98.56
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	98.56
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	98.54
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	98.48
3ugj_A	1303	Phosphoribosylformylglycinamidine synthase; amidot	98.43
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	98.42
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	98.38
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	98.29
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	98.27
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	98.07
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	98.06
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	98.01
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	97.99
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	97.93
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	97.9
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	97.75
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	97.72
2a9v_A	212	GMP synthase; structural genomics, joint center fo	97.63
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	97.5
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	97.43
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	97.43
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	97.4
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	97.39
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	97.34
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	97.1
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	97.04
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	97.0
3uow_A	556	GMP synthetase; structural genomics consortium, SG	96.99
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	96.74
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	96.69
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	96.45
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	96.24
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	96.1
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	96.09
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	95.33
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	95.2
3en0_A	291	Cyanophycinase; serine protease, beta peptide spec	93.92
3rht_A	259	(gatase1)-like protein; structural genomics, PSI-b	89.61

>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}

Probab=100.00  E-value=5.2e-43  Score=269.18  Aligned_cols=168  Identities=20%  Similarity=0.260  Sum_probs=159.1

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +++|.|++.+||++.|+..|+++|+++|++|+++|++++                 +++++.|..+.+|..++++++.+|
T Consensus         8 ~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~-----------------~v~~~~G~~v~~d~~l~~v~~~~y   70 (177)
T 4hcj_A            8 NNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG-----------------TAQGKLGGMTNIDLLFSEVDAVEF   70 (177)
T ss_dssp             CEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE-----------------EEEETTSCEEEECEEGGGCCGGGC
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-----------------eEeeCCCCEEecCccHHHCCHhHC
Confidence            366888889999999999999999999999999999876                 899999999999999999988899


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCce
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  167 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~  167 (220)
                      |+|+||||+++..+..++.+.+||+++++++|+|++||+|+++|+++|||+||++|+||..++.+++.|+.|++++    
T Consensus        71 D~liiPGG~g~~~l~~~~~~~~~l~~~~~~~k~iaaIC~g~~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~----  146 (177)
T 4hcj_A           71 DAVVFVGGIGCITLWDDWRTQGLAKLFLDNQKIVAGIGSGVVIMANAKILEEINVTCLSADESHVRHGNANIMSEN----  146 (177)
T ss_dssp             SEEEECCSGGGGGGTTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSS----
T ss_pred             CEEEECCCccHHHHhhCHHHHHHHHHHHHhCCEEEEecccHHHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCC----
Confidence            9999999998877889999999999999999999999999999999999999999999999999999999998876    


Q ss_pred             EEEcCCEEeCCCCCCHHHHHHHHHHHHcc
Q 027708          168 CVVDGNIITGATYEGHPEFIRLFLKALGG  196 (220)
Q Consensus       168 ~v~dg~iiTs~g~~s~~~~~~~li~~l~~  196 (220)
                      +|+|||+|||+|+.++.+|++++|+.|.+
T Consensus       147 vV~Dg~liTs~g~~~~~~~a~~lve~L~s  175 (177)
T 4hcj_A          147 VVVSGNIVTANGPTSSKDFANAVVGVLNS  175 (177)
T ss_dssp             EEEETTEEEECSGGGHHHHHHHHHHHHHT
T ss_pred             EEEECCEEECCCHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999865

>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}

Probab=100.00  E-value=8.3e-42  Score=270.30  Aligned_cols=190  Identities=18%  Similarity=0.190  Sum_probs=167.4

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHH--------hCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALL--------AFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATF   79 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~--------~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l   79 (220)
                      ++||+|+++|||+..|+..|.++|+        .+++++.++|++++                 ++.+++|+.+.+|..+
T Consensus         5 m~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~-----------------~v~~~~G~~i~~d~~~   67 (212)
T 3efe_A            5 TKKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKE-----------------MITTMGGLRIKPDISL   67 (212)
T ss_dssp             CCCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSC-----------------CEECTTCCEECCSEEG
T ss_pred             ccEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCC-----------------eEEcCCCCEEecCcCH
Confidence            4799999999999999999999999        66788999988765                 7899999999999999


Q ss_pred             CCCCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCC-CCHHHHHH-CCC
Q 027708           80 DEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYP-PVKPVLIA-AGA  157 (220)
Q Consensus        80 ~~~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~-~~~~~l~~-~g~  157 (220)
                      +++++.+||+||||||.+.. +..++.+++||+++++++++|++||+|+++|+++|||+||++|+|| ...+.+++ +|.
T Consensus        68 ~~~~~~~~D~livpGG~~~~-~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~  146 (212)
T 3efe_A           68 DECTLESKDLLILPGGTTWS-EEIHQPILERIGQALKIGTIVAAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKG  146 (212)
T ss_dssp             GGCCCCTTCEEEECCCSCTT-SGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCC
T ss_pred             HHCCccCCCEEEECCCCccc-cccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHcCCCCCCeeecCCHHHHHHHHhhCCC
Confidence            99877799999999998754 4678999999999999999999999999999999999999999997 67777755 543


Q ss_pred             --eEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccccccc--ccceeeecCCchhhhcccC
Q 027708          158 --SWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS--DKRILFLCGVSFCFQNLLE  220 (220)
Q Consensus       158 --~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a~~--~~~~~~~~~~~~~~~~~~~  220 (220)
                        .+.+.    .+|+|||+|||+|+. ++||++++|++++++.+.+  .+..++..+++.+|++||+
T Consensus       147 ~~~~~~~----~~V~Dg~iiTs~G~~-~~d~al~li~~l~g~~a~~va~~~~~~~~g~~~~~~~~~~  208 (212)
T 3efe_A          147 EKFYELG----PAVSDANLVTASGIA-PLEFAMEVLKKIDVFTLDALHSWYNLNKTHKPEYFFQLMN  208 (212)
T ss_dssp             TTTBCCC----SEEEETTEEEECTTC-HHHHHHHHHHHHTCSCHHHHHHHHHHHHHCCTHHHHHHHT
T ss_pred             ccccCCC----cEEEECCEEECCCch-HHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCHHHHHHHHh
Confidence              24443    499999999999985 9999999999999986655  6677778899999999986

>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}

Probab=100.00  E-value=8.5e-42  Score=269.63  Aligned_cols=187  Identities=13%  Similarity=0.140  Sum_probs=157.7

Q ss_pred             CCCCCCCCCeEEEEecCCCCchhhHHHHHHHHhCC-------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCccc
Q 027708            1 MANSKGGKRSVLLLCGDYMEDYEAMVPFQALLAFG-------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNF   73 (220)
Q Consensus         1 ~~~~~~~~~kI~il~~~g~~~~e~~~~~~~l~~ag-------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i   73 (220)
                      |+.|++.++||+|+++|||+..|+..|.++|+.+|       +++.++|++++                 ++.+++|+.+
T Consensus         1 m~~~~~~~~~v~ill~~g~~~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~-----------------~v~~~~G~~v   63 (209)
T 3er6_A            1 MSLTNKKNLRVVALAPTGRYFASIISSLEILETAAEFAEFQGFMTHVVTPNNR-----------------PLIGRGGISV   63 (209)
T ss_dssp             ------CCEEEEEECCCTTSCHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSS-----------------CEEETTTEEE
T ss_pred             CCCCCCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCC-----------------ceecCCCeEE
Confidence            67777778999999999999999999999999875       88999988764                 8999999999


Q ss_pred             ccCcCcCCCCCCCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHH
Q 027708           74 ALNATFDEIDPTKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPV  151 (220)
Q Consensus        74 ~~~~~l~~~~~~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~  151 (220)
                      .+|..++++  ++||+||||||.++..  +..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.
T Consensus        64 ~~d~~~~~~--~~~D~livpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~  141 (209)
T 3er6_A           64 QPTAQWQSF--DFTNILIIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKAGLLQQNKAVMHSYFAHL  141 (209)
T ss_dssp             ECSSCGGGC--SCCSEEEECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHTCCSSCEECCCHHHHHH
T ss_pred             eCCcCcccc--CCCCEEEECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHcCCCCCCeeEECHHHHHH
Confidence            999999986  4899999999987643  357999999999999999999999999999999999999999999999999


Q ss_pred             HHH-CCCe-EecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc-cccc-ccceeeec
Q 027708          152 LIA-AGAS-WIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT-ITGS-DKRILFLC  209 (220)
Q Consensus       152 l~~-~g~~-~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~-~a~~-~~~~~~~~  209 (220)
                      +++ +|.. +....   .+|+|||+|||+|+++++||++++|+++.|+ .+.+ ++.+++..
T Consensus       142 l~~~~p~~~~~~~~---~~v~Dg~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~  200 (209)
T 3er6_A          142 FGELFPEIMLMTEQ---KALIDGNVYLSSGPYSHSSVMLEIVEEYFGKHTRNLGNQFLSTIE  200 (209)
T ss_dssp             HHHHCTTSEECTTC---SEEEETTEEEECCSSCCHHHHHHHHHHHHCHHHHHHHHHHTTC--
T ss_pred             HHHHCCCcEEecCC---EEEEeCCEEECCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhccCc
Confidence            976 6654 44443   4999999999999999999999999987777 4555 55555544

>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}

Probab=100.00  E-value=3.3e-41  Score=272.86  Aligned_cols=183  Identities=22%  Similarity=0.234  Sum_probs=163.4

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHH-HhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQAL-LAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l-~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      ++||+|+++|||+..|+..|+++| +.+++++.++|++++                 +|.+++|+.+.++..+++++ ..
T Consensus        23 ~~~I~ill~~gf~~~e~~~p~dvl~~~~~~~v~~vs~~~~-----------------~V~~~~G~~i~~d~~l~~~~-~~   84 (253)
T 3ewn_A           23 DEQIAMLVYPGMTVMDLVGPHCMFGSLMGAKIYIVAKSLD-----------------PVTSDAGLAIVPTATFGTCP-RD   84 (253)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHTTSTTCEEEEEESSSS-----------------CEECTTSCEECCSEETTTSC-SS
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEeCCCC-----------------eEEcCCCCEEeCCcCHHHcC-CC
Confidence            379999999999999999999999 578999999999875                 78999999999999999875 47


Q ss_pred             ccEEEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCC
Q 027708           87 YDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM  165 (220)
Q Consensus        87 ~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~  165 (220)
                      ||+||||||. ++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.++++|.++++..  
T Consensus        85 yD~liVPGG~~g~~~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~--  162 (253)
T 3ewn_A           85 LTVLFAPGGTDGTLAAASDAETLAFMADRGARAKYITSVCSGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEAR--  162 (253)
T ss_dssp             CSEEEECCBSHHHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSS--
T ss_pred             CCEEEECCCccchhhhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCc--
Confidence            8999999998 7666678999999999999999999999999999999999999999999999999988888887543  


Q ss_pred             ceEEEcCCEEeCCCCCCHHHHHHHHHHHHcccc-ccc-ccceeeecCCc
Q 027708          166 AACVVDGNIITGATYEGHPEFIRLFLKALGGTI-TGS-DKRILFLCGVS  212 (220)
Q Consensus       166 ~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~-a~~-~~~~~~~~~~~  212 (220)
                        +|+|||+|||+|+++++||+++||+++.|+. +.+ ++.++|..+.+
T Consensus       163 --vV~Dg~iiTs~G~~a~idlaL~lv~~l~G~~~A~~va~~l~~~~~~p  209 (253)
T 3ewn_A          163 --VVRDRNRITGAGVTAGLDFGLSMVAELRDQTYAECAQLMSEYDPDPP  209 (253)
T ss_dssp             --EEEETTEEEECSTTHHHHHHHHHHHHHSCHHHHHHHHHHTTCCCCCS
T ss_pred             --EEEECCEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHhcccCCCCC
Confidence              8999999999999999999999999888874 444 66666655443

>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A

Probab=100.00  E-value=9.9e-41  Score=254.93  Aligned_cols=166  Identities=35%  Similarity=0.612  Sum_probs=154.5

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +|||+|+++|||+..|+..|+++|+.+|+++.++|++++                 ++.++.|+.+.++..++++++.+|
T Consensus         2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-----------------~v~~~~g~~i~~~~~~~~~~~~~~   64 (168)
T 3l18_A            2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRG-----------------KITGKHGYSVNVDLTFEEVDPDEF   64 (168)
T ss_dssp             CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-----------------EEECTTSCEEEECEEGGGCCGGGC
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCC-----------------EEecCCCcEEeccCChhHCCHhhC
Confidence            579999999999999999999999999999999999775                 889999999999999999876789


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCce
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  167 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~  167 (220)
                      |+|+||||.++..+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+||...+.+++.+..+++.    .
T Consensus        65 D~livpGG~~~~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~----~  140 (168)
T 3l18_A           65 DALVLPGGKAPEIVRLNEKAVMITRRMFEDDKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWIDA----E  140 (168)
T ss_dssp             SEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCS----S
T ss_pred             CEEEECCCcCHHHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecC----C
Confidence            999999998766667899999999999999999999999999999999999999999999999999987787654    3


Q ss_pred             EEEcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708          168 CVVDGNIITGATYEGHPEFIRLFLKAL  194 (220)
Q Consensus       168 ~v~dg~iiTs~g~~s~~~~~~~li~~l  194 (220)
                      +++|||+|||+|+.++.+|++++|+++
T Consensus       141 ~v~dg~iiT~~g~~~~~d~~l~li~~l  167 (168)
T 3l18_A          141 VVVDGNWVSSRHPGDLYAWMREFVKLL  167 (168)
T ss_dssp             CEEETTEEEECSGGGHHHHHHHHGGGC
T ss_pred             EEEeCCEEEcCCHHHHHHHHHHHHHhh
Confidence            899999999999999999999999865

>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A

Probab=100.00  E-value=7.9e-41  Score=267.75  Aligned_cols=181  Identities=18%  Similarity=0.264  Sum_probs=162.9

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHh-CCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +||+|+++|||+..|+..|+++|+. .++++.++|++++                 +|.+++|+.+.++..+++++  +|
T Consensus         6 ~~V~ill~~gf~~~e~~~p~evl~~~~~~~v~~vs~~~~-----------------~V~~~~G~~v~~d~~l~~~~--~~   66 (231)
T 3noq_A            6 VQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPG-----------------PVVASSGLVLQATTSFADCP--PL   66 (231)
T ss_dssp             EEEEEECCTTCCHHHHHHHHHHHTTSTTEEEEEEESSSE-----------------EEECTTSCEEEECEETTTCC--CC
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------cEEcCCCCEEecccChhHCC--cC
Confidence            7999999999999999999999998 7999999999765                 89999999999999999874  79


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCce
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  167 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~  167 (220)
                      |+||||||.++..+..++.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.++++|..+++..    
T Consensus        67 D~livpGG~g~~~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~----  142 (231)
T 3noq_A           67 DVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHER----  142 (231)
T ss_dssp             SEEEECCSTTHHHHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSS----
T ss_pred             CEEEECCCCChhhhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCc----
Confidence            9999999988766678999999999999999999999999999999999999999999999999988888886543    


Q ss_pred             EEEcCCEEeCCCCCCHHHHHHHHHHHHcccc-ccc-ccceeeecCCc
Q 027708          168 CVVDGNIITGATYEGHPEFIRLFLKALGGTI-TGS-DKRILFLCGVS  212 (220)
Q Consensus       168 ~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~-a~~-~~~~~~~~~~~  212 (220)
                      +|+|||+|||+|+++++||++++|+++.|+. +++ ++.++|..+.+
T Consensus       143 vV~Dg~iiTs~G~~a~~d~aL~li~~~~G~~~A~~va~~l~~~~~~p  189 (231)
T 3noq_A          143 VVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQLEYAPAPP  189 (231)
T ss_dssp             EEEETTEEEECSTTHHHHHHHHHHHHHSCHHHHHHHHHHTTCCCCCS
T ss_pred             EEEeCCEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHhceeCCCCC
Confidence            8999999999999999999999999888774 444 66666655443

>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}

Probab=100.00  E-value=4.8e-41  Score=264.01  Aligned_cols=179  Identities=15%  Similarity=0.216  Sum_probs=155.8

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCC------CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFG------VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDE   81 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag------~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~   81 (220)
                      ++||+|+++|||+..|+..|+++|+.+|      +++.++|++++                 ++.+++|+.+.++ ++++
T Consensus         5 ~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~-----------------~v~~~~G~~i~~d-~l~~   66 (202)
T 3gra_A            5 PYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGD-----------------RVLSDLGLELVAT-ELSA   66 (202)
T ss_dssp             CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSS-----------------EEEBTTSCEEECE-ECCS
T ss_pred             cEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC-----------------ceEcCCCCEEECC-Cccc
Confidence            5899999999999999999999999987      89999998765                 8999999999999 9998


Q ss_pred             CCCCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH-CCCeEe
Q 027708           82 IDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGASWI  160 (220)
Q Consensus        82 ~~~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~-~g~~~~  160 (220)
                      ++.++||+||||||.+.... . +.+++||+++++++++|++||+|+++|+++|||+||++|+||...+.+++ +|...+
T Consensus        67 ~~~~~~D~livpGG~~~~~~-~-~~l~~~l~~~~~~g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~  144 (202)
T 3gra_A           67 AALKELDLLVVCGGLRTPLK-Y-PELDRLLNDCAAHGMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRI  144 (202)
T ss_dssp             GGGTTCSEEEEECCTTCCSC-C-TTHHHHHHHHHHHTCEEEEETTHHHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEE
T ss_pred             ccCCCCCEEEEeCCCchhhc-c-HHHHHHHHHHHhhCCEEEEECHHHHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEe
Confidence            66678999999999876543 4 89999999999999999999999999999999999999999999999977 665544


Q ss_pred             cCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc-cccc-ccceeeec
Q 027708          161 EPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT-ITGS-DKRILFLC  209 (220)
Q Consensus       161 ~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~-~a~~-~~~~~~~~  209 (220)
                      .++   .+++|||+|||+|+++++||++++|+++.|+ .+.+ ++.+++..
T Consensus       145 ~~~---~~v~dg~iiTs~G~~a~~dlal~li~~~~G~~~A~~va~~l~~~~  192 (202)
T 3gra_A          145 TPA---SFTLDRDRLSAASPNGAMELMLGLVRRLYGDGLAEGVEEILSFSG  192 (202)
T ss_dssp             CSS---SEEEETTEEEESSHHHHHHHHHHHHHHHHCHHHHHHHHHHHC---
T ss_pred             cCC---eEEEeCCEEECCCHHHHHHHHHHHHHHHhCHHHHHHHHHHhCcCc
Confidence            444   4999999999999999999999999987776 4555 55555544

>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}

Probab=100.00  E-value=1.1e-40  Score=259.72  Aligned_cols=178  Identities=26%  Similarity=0.417  Sum_probs=157.2

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCC-CCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGK-KSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~-~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      |||+|+++|||+..|+..|+++|+.+|+++.++|+++ +                 ++.++.|+.+.++..+++++..+|
T Consensus         6 kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~-----------------~v~~~~g~~i~~d~~l~~~~~~~~   68 (190)
T 4e08_A            6 KSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGE-----------------AVKCSRDVQILPDTSLAQVASDKF   68 (190)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSS-----------------CEECTTSCEEECSEETGGGTTCCC
T ss_pred             cEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCc-----------------ceecCCCcEEECCCCHHHCCcccC
Confidence            7999999999999999999999999999999999976 3                 788999999999999999877789


Q ss_pred             cEEEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCc
Q 027708           88 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  166 (220)
Q Consensus        88 D~liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~  166 (220)
                      |+||||||. +...+..++.+++||+++++++|+|+++|+|+++|+++|||+||++|+||...+.+++ +..+++..   
T Consensus        69 D~livpGG~~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~-~~~~~~~~---  144 (190)
T 4e08_A           69 DVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLVN-NYSYVDDK---  144 (190)
T ss_dssp             SEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGGGGSSS-SSEECSSC---
T ss_pred             CEEEECCCChHHHHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCeEEeCcCHHHHHhc-CCcccCCC---
Confidence            999999995 4444667999999999999999999999999999999999999999999999888866 34566433   


Q ss_pred             eEEEcCCEEeCCCCCCHHHHHHHHHHHHcccc-ccc-ccceee
Q 027708          167 ACVVDGNIITGATYEGHPEFIRLFLKALGGTI-TGS-DKRILF  207 (220)
Q Consensus       167 ~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~-a~~-~~~~~~  207 (220)
                      .+++|||+|||+|+.+++||++++|+++.|+. +.+ ++.+++
T Consensus       145 ~~v~dg~iiTs~g~~a~~d~al~li~~~~g~~~a~~va~~l~~  187 (190)
T 4e08_A          145 TVVKDGNLITSRGPGTAYEFALKIAEELAGKEKVQEVAKGLLV  187 (190)
T ss_dssp             SEEEETTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHHHHTC
T ss_pred             cEEEECCEEECCChHHHHHHHHHHHHHhcCHHHHHHHHHhhCc
Confidence            49999999999999999999999999887774 444 544443

>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=2.3e-40  Score=261.75  Aligned_cols=189  Identities=16%  Similarity=0.244  Sum_probs=164.0

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhC--CCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAF--GVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT   85 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~a--g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~   85 (220)
                      ++||+|+++|||+..|+..|+++|+.+  ++++.++|++++                 +|.++.|+.+.+|..+++.+  
T Consensus         4 ~~~V~ill~~g~~~~e~~~~~~~l~~a~~~~~v~~vs~~~~-----------------~V~~~~G~~v~~d~~~~~~~--   64 (211)
T 3mgk_A            4 SYRIDVLLFNKFETLDVFGPVEIFGNLQDDFELNFISSDGG-----------------LVESSQKVRVETSLYTRDEN--   64 (211)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHHHHTTCTTTEEEEEECSSCE-----------------EEECTTCCEEEEBCCCCCSS--
T ss_pred             ceEEEEEEeCCcchhHHHHHHHHHHhCCCceEEEEEECCCC-----------------eEecCCCcEEEeccchhhCC--
Confidence            379999999999999999999999998  489999998765                 89999999999999998864  


Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHC-CC-eEecCC
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GA-SWIEPE  163 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~-g~-~~~~~~  163 (220)
                      +||+||||||.++..+..++.+++||+++++++|+|++||+|+++|+++|||+||++|+||...+.+++. |. .+....
T Consensus        65 ~~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~  144 (211)
T 3mgk_A           65 IEKILFVPGGSGTREKVNDDNFINFIGNMVKESKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEA  144 (211)
T ss_dssp             SEEEEEECCSTHHHHHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSC
T ss_pred             CCCEEEECCCcchhhhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCC
Confidence            6999999999876666789999999999999999999999999999999999999999999999999884 54 555444


Q ss_pred             CCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc-cccc-ccceeeec---CCchhhhcc
Q 027708          164 TMAACVVDGNIITGATYEGHPEFIRLFLKALGGT-ITGS-DKRILFLC---GVSFCFQNL  218 (220)
Q Consensus       164 ~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~-~a~~-~~~~~~~~---~~~~~~~~~  218 (220)
                         .+|+|||+|||+|+++++||++++|+++.|+ .+.+ ++.+++..   +.+.+|..+
T Consensus       145 ---~~v~Dg~iiTs~G~~a~~dlal~lv~~~~G~~~A~~va~~l~~~~~r~~~q~~f~~~  201 (211)
T 3mgk_A          145 ---RWVKDGNIYTSSGVSAGIDMTLGFIEDLIGKEKALEISRSIEYFWNEDSNYDPFSKI  201 (211)
T ss_dssp             ---SEEEETTEEEECSHHHHHHHHHHHHHHHHCHHHHHHHHHHHTCCCCCCCSCCGGGTT
T ss_pred             ---eEEEeCCEEECCCHHHHHHHHHHHHHHHhCHHHHHHHHHhcEECCcCCCCCchhHHH
Confidence               4999999999999999999999999988777 4455 55555542   456666654

>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0

Probab=100.00  E-value=7.5e-41  Score=264.08  Aligned_cols=190  Identities=18%  Similarity=0.313  Sum_probs=164.5

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCC-CCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGK-KSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~-~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      ++||+|+++|||+..|+..|+++|+.+|+++.++|+++ .                 ++.+++|+.+.++..++++++.+
T Consensus         9 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~-----------------~v~~~~G~~v~~d~~l~~~~~~~   71 (208)
T 3ot1_A            9 SKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKL-----------------QVQGSRGVWLTAEQTLEACSAEA   71 (208)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCS-----------------EEECTTSCEEECSEEGGGCCGGG
T ss_pred             CCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCc-----------------ceecCCCcEEeCCCCHHHCCCcC
Confidence            48999999999999999999999999999999999975 3                 78899999999999999987779


Q ss_pred             ccEEEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHH-HHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCC
Q 027708           87 YDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPET  164 (220)
Q Consensus        87 ~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~-~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~  164 (220)
                      ||+||||||. ++..+..++.+++||+++++++|+|++||+|+ ++|+++|||+||++|+||...+.+.  +..|.++. 
T Consensus        72 ~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~--~~~~~~~~-  148 (208)
T 3ot1_A           72 FDALALPGGVGGAQAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIP--SERLSRQR-  148 (208)
T ss_dssp             CSEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSC--TTTBCCSS-
T ss_pred             CCEEEECCCchHHHHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHcc--CCccccCc-
Confidence            9999999997 45556789999999999999999999999999 9999999999999999999887662  24455443 


Q ss_pred             CceEEE--cCCEEeCCCCCCHHHHHHHHHHHHccc-cccc-ccceeeecCCchhhhcccC
Q 027708          165 MAACVV--DGNIITGATYEGHPEFIRLFLKALGGT-ITGS-DKRILFLCGVSFCFQNLLE  220 (220)
Q Consensus       165 ~~~~v~--dg~iiTs~g~~s~~~~~~~li~~l~~~-~a~~-~~~~~~~~~~~~~~~~~~~  220 (220)
                         +++  |||+|||+|+.+++||++++|+++.|+ .+.+ ++.+++..+...+|..+++
T Consensus       149 ---vv~d~dg~iiTs~g~~a~~d~al~lv~~l~G~~~a~~va~~l~~~~~~~~q~~~~l~  205 (208)
T 3ot1_A          149 ---VCYYATQHLLTSQGPGTALEFALAMIALLAGVELAQHVAAPMVLHPQQLTELSGFID  205 (208)
T ss_dssp             ---EEEEGGGTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGGTCCHHHHHHHHTTTT
T ss_pred             ---EEEeCCCCEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhheeCCCCCCccchhhc
Confidence               565  569999999999999999999988777 4455 7777776677777777653

>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}

Probab=100.00  E-value=1.1e-39  Score=253.93  Aligned_cols=172  Identities=27%  Similarity=0.548  Sum_probs=154.8

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCccccccc-----ccCcccccCcCcCCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSE-----TRGHNFALNATFDEI   82 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~-----~~g~~i~~~~~l~~~   82 (220)
                      ++||+|+++|||+..|+..|+++|+.+|+++.+++++++                 ++.+     +.|..+.++..++++
T Consensus         9 ~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-----------------~v~~~~~~~~~g~~v~~~~~~~~~   71 (190)
T 2vrn_A            9 GKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPG-----------------EIQSMKGDIEPQEKYRVDHVVSEV   71 (190)
T ss_dssp             TCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSS-----------------EEEEEETTTEEEEEEECSEEGGGC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCC-----------------ccccccccccCCcEEeCCCChhhC
Confidence            579999999999999999999999999999999999765                 5655     678999999999988


Q ss_pred             CCCCccEEEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEec
Q 027708           83 DPTKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE  161 (220)
Q Consensus        83 ~~~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~  161 (220)
                      ++.+||+||||||. ++..+..++.+++||+++++++++|+++|+|+++|+++|||+||++|+||...+.+++.+.++++
T Consensus        72 ~~~~~D~livpGG~~~~~~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~  151 (190)
T 2vrn_A           72 QVSDYDGLLLPGGTVNPDKLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVD  151 (190)
T ss_dssp             CGGGCSEEEECCCTHHHHHHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECC
T ss_pred             ChhhCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhCcccCCcEEecCccHHHHHHHcCCeEEC
Confidence            66789999999997 55556789999999999999999999999999999999999999999999999999998888887


Q ss_pred             CCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHH-cccccc
Q 027708          162 PETMAACVVDGNIITGATYEGHPEFIRLFLKAL-GGTITG  200 (220)
Q Consensus       162 ~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l-~~~~a~  200 (220)
                      ++    +++|||+|||+|+.++.+|++++|+++ .|+...
T Consensus       152 ~~----~v~Dg~iiTs~g~~s~~~~~l~li~~l~~g~~~a  187 (190)
T 2vrn_A          152 EE----CVTDKGVVTSRKPDDLPAFNKKIVEEFAEGDHSS  187 (190)
T ss_dssp             CS----CEEETTEEECSSGGGHHHHHHHHHHHHHHCCCGG
T ss_pred             CC----EEEcCCEEEcCChhhHHHHHHHHHHHHhcccccc
Confidence            76    566999999999999999999999988 666543

>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A

Probab=100.00  E-value=6.8e-40  Score=255.87  Aligned_cols=180  Identities=22%  Similarity=0.340  Sum_probs=156.2

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCC----
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDP----   84 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~----   84 (220)
                      +||+|+++|||++.|+..|+++|+++|+++++++......              .++.++.|+.+.+|..+++++.    
T Consensus         5 ~kV~ill~dGfe~~E~~~p~~vl~~ag~~v~~~s~~~~~~--------------~~v~~~~g~~v~~d~~~~~~~~~d~~   70 (194)
T 4gdh_A            5 VKVCLFVADGTDEIEFSAPWGIFKRAEIPIDSVYVGENKD--------------RLVKMSRDVEMYANRSYKEIPSADDF   70 (194)
T ss_dssp             CCEEEEEETTCCHHHHHHHHHHHHHTTCCEEEEEESSCTT--------------CEEECTTSCEEECSEEGGGSCCHHHH
T ss_pred             CEEEEEECCCcCHHHHHHHHHHHHHCCCeEEEEEEcCCCC--------------ceEecCCCceeeccccHhhCCccccc
Confidence            5999999999999999999999999999999888754321              1688899999999999988753    


Q ss_pred             -CCccEEEEcCCC-CcccccCChHHHHHHHHHHhC-CCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEec
Q 027708           85 -TKYDGLVIPGGR-APEYLAMNDSVIDLVRKFSNS-GKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIE  161 (220)
Q Consensus        85 -~~~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~-g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~  161 (220)
                       .+||+||||||. ++..+..++.+++||++++++ +|+|+++|+|+ +|+++|+|+||++|+||..++.+++.+..|++
T Consensus        71 ~~~yD~lvvPGG~~~~~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d  149 (194)
T 4gdh_A           71 AKQYDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLD  149 (194)
T ss_dssp             HHHCSEEEECCCHHHHHHHHTCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECC
T ss_pred             cccCCEEEECCCchhHhHhhhCHHHHHHHHHhhhcCCceEEeecccc-cchhhceecCCceEecCcHHHHHHhcCCeeec
Confidence             359999999996 466678899999999999875 79999999998 56778889999999999999999999999987


Q ss_pred             CCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccccc-cc-ccceee
Q 027708          162 PETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT-GS-DKRILF  207 (220)
Q Consensus       162 ~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a-~~-~~~~~~  207 (220)
                      ++    +|+|||+|||+|+.+++||++++|+++.|++. .+ ++.+++
T Consensus       150 ~~----vV~Dg~iiTs~g~~~~~d~al~lve~l~G~~~a~~va~~l~~  193 (194)
T 4gdh_A          150 QP----VVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVYKSLSM  193 (194)
T ss_dssp             SS----EEEETTEEEECSGGGHHHHHHHHHHHHSCHHHHHHHHHHTTC
T ss_pred             ce----EEEcCCEEECCCHhHHHHHHHHHHHHHcCHHHHHHHHhhccC
Confidence            75    89999999999999999999999999988854 44 555544

>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=4.9e-39  Score=250.89  Aligned_cols=167  Identities=33%  Similarity=0.584  Sum_probs=154.4

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccc-cccccCc-ccccCcCcCCCCCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQT-YSETRGH-NFALNATFDEIDPT   85 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~-v~~~~g~-~i~~~~~l~~~~~~   85 (220)
                      ++||+|+++|||+..|+..|.++|+.+|+++.+++++++                 + +.+++|+ .+.++..+++++..
T Consensus        23 ~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~-----------------~~v~~~~g~~~v~~~~~l~~~~~~   85 (193)
T 1oi4_A           23 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAG-----------------KTVKGKKGEASVTIDKSIDEVTPA   85 (193)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTT-----------------CEEECTTSSCEEECCEEGGGCCGG
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCC-----------------cceecCCCCeEEECCCChHHCCcc
Confidence            479999999999999999999999999999999998765                 5 8888999 99999999988667


Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCC
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM  165 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~  165 (220)
                      +||+||||||.++..+..++.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.+++.+.++++..  
T Consensus        86 ~~D~livpGG~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~--  163 (193)
T 1oi4_A           86 EFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE--  163 (193)
T ss_dssp             GCSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS--
T ss_pred             cCCEEEECCCcCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCC--
Confidence            899999999977655667899999999999999999999999999999999999999999999999998888888765  


Q ss_pred             ceEEEcCC-EEeCCCCCCHHHHHHHHHHHHc
Q 027708          166 AACVVDGN-IITGATYEGHPEFIRLFLKALG  195 (220)
Q Consensus       166 ~~~v~dg~-iiTs~g~~s~~~~~~~li~~l~  195 (220)
                        +++||| +|||+|+.++.||++++|+++.
T Consensus       164 --~v~Dg~~iiTs~g~~~~~d~~l~li~~l~  192 (193)
T 1oi4_A          164 --VVVDKDQLVTSRTPDDLPAFNREALRLLG  192 (193)
T ss_dssp             --CEEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             --EEEECCEEEECCCcchHHHHHHHHHHHhh
Confidence              688999 9999999999999999999875

>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...

Probab=100.00  E-value=1.5e-39  Score=254.53  Aligned_cols=180  Identities=23%  Similarity=0.357  Sum_probs=156.9

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCC-CCCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEI-DPTK   86 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~-~~~~   86 (220)
                      ++||+|+++|||+..|+..|+++|+.+|+++.+++++++.                ++.++.|+.+.++..++++ ++.+
T Consensus         3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~----------------~v~~~~g~~v~~d~~l~~~~~~~~   66 (197)
T 2rk3_A            3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKD----------------PVQCSRDVVICPDASLEDAKKEGP   66 (197)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSS----------------CEECTTSCEECCSEEHHHHHTTCC
T ss_pred             CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCC----------------ccccCCCCEEeCCcCHHHcCCccC
Confidence            3699999999999999999999999999999999987631                6888999999999999887 6678


Q ss_pred             ccEEEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHC-CCeEecCCC
Q 027708           87 YDGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAA-GASWIEPET  164 (220)
Q Consensus        87 ~D~liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~-g~~~~~~~~  164 (220)
                      ||+||||||. ++..+..++.+.+||+++++++|+|++||+|+++|+++|+|+||++|+||...+.+++. +..+.+.  
T Consensus        67 ~D~livpGG~~~~~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~--  144 (197)
T 2rk3_A           67 YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN--  144 (197)
T ss_dssp             CSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCC--
T ss_pred             CCEEEECCCchhHHHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCC--
Confidence            9999999997 34446679999999999999999999999999999999999999999999999999864 4344433  


Q ss_pred             CceEEEcCCEEeCCCCCCHHHHHHHHHHHHcccc-ccc-ccceee
Q 027708          165 MAACVVDGNIITGATYEGHPEFIRLFLKALGGTI-TGS-DKRILF  207 (220)
Q Consensus       165 ~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~-a~~-~~~~~~  207 (220)
                        .+++|||+|||+|+.+++||++++|+++.|+. +++ ++.+++
T Consensus       145 --~~v~Dg~iiTs~g~~a~~d~al~li~~l~g~~~a~~va~~~~~  187 (197)
T 2rk3_A          145 --RVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL  187 (197)
T ss_dssp             --SEEEETTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGGTC
T ss_pred             --CEEEeCCEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHhh
Confidence              49999999999999999999999999887774 444 554444

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=1.2e-38  Score=268.84  Aligned_cols=172  Identities=28%  Similarity=0.493  Sum_probs=158.1

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCc-ccccCcCcCCCCCCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGH-NFALNATFDEIDPTK   86 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~i~~~~~l~~~~~~~   86 (220)
                      ++||+|+++|||+..|+..|+++|+.+|+++.++|+++++                .+.+++|+ .+.++..++++++.+
T Consensus        10 mkkV~ILl~dgf~~~El~~p~dvL~~Ag~~v~vvS~~~g~----------------~V~ss~G~~~i~~d~~l~~v~~~~   73 (365)
T 3fse_A           10 KKKVAILIEQAVEDTEFIIPCNGLKQAGFEVVVLGSRMNE----------------KYKGKRGRLSTQADGTTTEAIASE   73 (365)
T ss_dssp             -CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSSC----------------CEECTTSCCEECCSEETTTCCGGG
T ss_pred             ceEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEECCCCc----------------eeecCCCceEEeCCCCHhhCCCcC
Confidence            5799999999999999999999999999999999998751                38899999 999999999987678


Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCc
Q 027708           87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  166 (220)
Q Consensus        87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~  166 (220)
                      ||+||||||.++..+..++.+.+||+++++++++|++||+|+++|+++|||+||++|+||...+.+++.++.+.+..   
T Consensus        74 ~DaLiVPGG~g~~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~---  150 (365)
T 3fse_A           74 FDAVVIPGGMAPDKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEA---  150 (365)
T ss_dssp             CSEEEECCBTHHHHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSS---
T ss_pred             CCEEEEECCcchhhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCc---
Confidence            99999999987666678999999999999999999999999999999999999999999999999998778887653   


Q ss_pred             eEEEcCCEEeCCCCCCHHHHHHHHHHHHccccc
Q 027708          167 ACVVDGNIITGATYEGHPEFIRLFLKALGGTIT  199 (220)
Q Consensus       167 ~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a  199 (220)
                       +|+|||+|||+|+.++.+|++++|+.+++...
T Consensus       151 -vV~DGniITs~G~~a~~d~al~lIe~L~g~~~  182 (365)
T 3fse_A          151 -LVVDGNLITSREPGDLAIFTTAILSRLGYGGK  182 (365)
T ss_dssp             -CEEETTEEEECSGGGHHHHHHHHHHHTTCCCS
T ss_pred             -EEEECCEEECCCHHHHHHHHHHHHHHhcCchH
Confidence             89999999999999999999999999988744

>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=6.5e-38  Score=246.66  Aligned_cols=166  Identities=21%  Similarity=0.226  Sum_probs=145.8

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhC-CCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAF-GVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~a-g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      ++||+|+++|||+..|+..|.++|+.+ ++++.++|+++                  .+.+++|+.+.++..++++ +.+
T Consensus         3 m~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~------------------~V~~~~G~~v~~d~~l~~~-~~~   63 (206)
T 3f5d_A            3 LKKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDP------------------IVSSIGGFKTSVDYIIGLE-PAN   63 (206)
T ss_dssp             CEEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSS------------------EEEBTTSCEEECSEETTSS-CSC
T ss_pred             ccEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCC------------------CEEecCCcEEecCcChhhC-CcC
Confidence            379999999999999999999999998 99999999865                  3778899999999999987 468


Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH----C-CCeEec
Q 027708           87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA----A-GASWIE  161 (220)
Q Consensus        87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~----~-g~~~~~  161 (220)
                      ||+||||||.++..  .++.+++||+++++++++|++||+|+++|+++|||+||++|+||.  +.+++    . ++++.+
T Consensus        64 ~D~livpGG~~~~~--~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~aGLL~Gr~aTthw~--~~~~~~~~~~~~~~~~~  139 (206)
T 3f5d_A           64 FNLLVMIGGDSWSN--DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKNGLLNNHSHTGNFV--YLWKDYKQYKPISSFVE  139 (206)
T ss_dssp             CSEEEECCBSCCCC--CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHTTTTTTSCBCCSCG--GGGTTCTTCCCSSCBCC
T ss_pred             CCEEEEcCCCChhh--cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCCEEEccCH--HHhhhhHhhcCCCeEcc
Confidence            99999999987654  899999999999999999999999999999999999999999993  23332    2 455654


Q ss_pred             CCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccccccc
Q 027708          162 PETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTITGS  201 (220)
Q Consensus       162 ~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a~~  201 (220)
                      .    .+|+|||+|||+|+. ++||++++|++++.+.+.+
T Consensus       140 ~----~~V~Dg~iiTs~G~a-~id~al~li~~l~~~~a~~  174 (206)
T 3f5d_A          140 K----QAVRDKNLVTANGTA-PIEFTNLILEMIDFDTPEN  174 (206)
T ss_dssp             S----SEEEETTEEEECTTC-HHHHHHHHHHHTTCSCHHH
T ss_pred             C----CEEEECCEEECCCch-HHHHHHHHHHHhCcchHHH
Confidence            4    399999999999985 9999999999998777766

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=3.2e-37  Score=265.12  Aligned_cols=201  Identities=75%  Similarity=1.285  Sum_probs=170.6

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +|||+|+++|||+..|+..|+++|+++|++++++|+++.+.++.....+...+. ..+.++.|..+.++..++++++.+|
T Consensus        12 ~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~   90 (396)
T 3uk7_A           12 SRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGH-QTYFESRGHNFTLNATFDEVDLSKY   90 (396)
T ss_dssp             CCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSS-SSCEEEECCCEECCSCGGGCCGGGC
T ss_pred             CCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccc-hhhhhccCceeeccCChhhcCcccC
Confidence            479999999999999999999999999999999999865433222222222222 2677888999999999999877899


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCce
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  167 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~  167 (220)
                      |+||||||.++..+..++.+.+||+++++++|+|+++|+|+++|+++|||+||++|+||...+.+++.|..|++.+.+..
T Consensus        91 D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~  170 (396)
T 3uk7_A           91 DGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIASICHGQLILAAADTVNGRKCTAYATVGPSLVAAGAKWVEPITPDV  170 (396)
T ss_dssp             SEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCCSSTTC
T ss_pred             CEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhccccCCCEeecCcchHHHHHHCCCEEECCCCCcc
Confidence            99999999876656789999999999999999999999999999999999999999999999999988899988765456


Q ss_pred             EEEcCCEEeCCCCCCHHHHHHHHHHHHcccccccccceeeec
Q 027708          168 CVVDGNIITGATYEGHPEFIRLFLKALGGTITGSDKRILFLC  209 (220)
Q Consensus       168 ~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a~~~~~~~~~~  209 (220)
                      +++|||+|||+|+.++.+|++++|+++.++.......+.++.
T Consensus       171 ~v~Dg~iiT~~g~~~~~d~al~li~~l~g~~~~~~~ki~ill  212 (396)
T 3uk7_A          171 CVVDGSLITAATYEGHPEFIQLFVKALGGKITGANKRILFLC  212 (396)
T ss_dssp             EEEETTEEEESSGGGHHHHHHHHHHHTTCEEECCCCEEEEEC
T ss_pred             eEecCCEEEecCcccHHHHHHHHHHHHhccchhccceEEEEe
Confidence            999999999999999999999999999998654433333333

>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2

Probab=100.00  E-value=5.3e-38  Score=247.24  Aligned_cols=182  Identities=23%  Similarity=0.382  Sum_probs=154.8

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|+++|||+..|+..|+++|+.+|+++.++|++++...              ++.+++|+.+.++..++++++.+||
T Consensus         3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~--------------~v~~~~g~~v~~~~~l~~~~~~~~D   68 (205)
T 2ab0_A            3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNL--------------AITCSRGVKLLADAPLVEVADGEYD   68 (205)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCC--------------EEECTTSCEEECSEEHHHHTTSCCS
T ss_pred             cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCc--------------eeecCCCeEEecCCCHHHCCcccCC
Confidence            69999999999999999999999999999999998764100              5788899999999999887667899


Q ss_pred             EEEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHH-HHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCc
Q 027708           89 GLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  166 (220)
Q Consensus        89 ~liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~-~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~  166 (220)
                      +||||||. ++..+..++.+.+||+++++++|+|++||+|+ ++|+++|||+||++|+||...+.+.+  ..+.+.    
T Consensus        69 ~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~--~~~~~~----  142 (205)
T 2ab0_A           69 VIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPA--EQWLDK----  142 (205)
T ss_dssp             EEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCT--TTBCCC----
T ss_pred             EEEECCCcccHHHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccC--CEEecC----
Confidence            99999997 34556679999999999999999999999999 99999999999999999987654432  345443    


Q ss_pred             eEEEcCCE--EeCCCCCCHHHHHHHHHHHHcccc-ccc-ccceeeecC
Q 027708          167 ACVVDGNI--ITGATYEGHPEFIRLFLKALGGTI-TGS-DKRILFLCG  210 (220)
Q Consensus       167 ~~v~dg~i--iTs~g~~s~~~~~~~li~~l~~~~-a~~-~~~~~~~~~  210 (220)
                      .+++|||+  |||+|+.++.+|++++|+++.|.. +.+ ++.+++...
T Consensus       143 ~vv~Dg~i~viTs~g~~s~~d~al~li~~l~g~~~a~~va~~l~~~~~  190 (205)
T 2ab0_A          143 RVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAG  190 (205)
T ss_dssp             SEEEETTTTEEEECSGGGHHHHHHHHHHHHTCHHHHHHHHTTTTCCTT
T ss_pred             CEEEeCCcCeEECcChhhHHHHHHHHHHHhcChHHHHHHHHhcccCCC
Confidence            38899999  999999999999999999988774 455 665666543

>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2

Probab=100.00  E-value=3e-37  Score=239.78  Aligned_cols=170  Identities=22%  Similarity=0.328  Sum_probs=149.1

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHh-CCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +||+|+++|||++.|+..|.++|+. +++++.++|++++                 ++.+++|+.+.++..++++++.+|
T Consensus         2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~-----------------~v~~~~g~~v~~~~~~~~~~~~~~   64 (188)
T 2fex_A            2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-----------------PVTSMGGLKVTPDTSYDALDPVDI   64 (188)
T ss_dssp             CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-----------------CEECTTCCEEECSEEGGGCCTTTC
T ss_pred             cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCC-----------------ceeeCCCcEEeccccHHHCCcccC
Confidence            6999999999999999999999999 9999999999865                 788899999999999998876789


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH-CCC--eEecCCC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA-AGA--SWIEPET  164 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~-~g~--~~~~~~~  164 (220)
                      |+||||||.+.. ...++.+++||+++++++++|++||+|+++|+++|||+||++|+||.....+++ ++.  .+.++. 
T Consensus        65 D~livpGG~~~~-~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~-  142 (188)
T 2fex_A           65 DALVIPGGLSWE-KGTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQP-  142 (188)
T ss_dssp             SEEEECCBSHHH-HTCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCS-
T ss_pred             CEEEECCCCccc-ccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCC-
Confidence            999999997643 357899999999999999999999999999999999999999999986655544 443  344443 


Q ss_pred             CceEEEcCCEEeCCCCCCHHHHHHHHHHHHcccccc
Q 027708          165 MAACVVDGNIITGATYEGHPEFIRLFLKALGGTITG  200 (220)
Q Consensus       165 ~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a~  200 (220)
                        ++|+|||+|||+|+. ++||++++|+++.+....
T Consensus       143 --~~v~Dg~iiTs~g~~-~~d~al~lv~~l~~~~~~  175 (188)
T 2fex_A          143 --RAVSDGGVVTAAGSA-PVSFAVEILKSLGLFGPE  175 (188)
T ss_dssp             --SCEEETTEEEECTTC-HHHHHHHHHHHTTCCSHH
T ss_pred             --CEEEECCEEECCCcc-HHHHHHHHHHHccCCCHH
Confidence              189999999999985 899999999999877543

>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}

Probab=100.00  E-value=2.6e-37  Score=247.65  Aligned_cols=176  Identities=19%  Similarity=0.235  Sum_probs=153.8

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCC--CeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFG--VSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT   85 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag--~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~   85 (220)
                      ++||+|+++|||+..|+..|+++|+.++  +++.+++ +++                 ++.++.|+.+.++..+++.  .
T Consensus        20 ~~kV~ill~dGf~~~e~~~p~dvl~~~~~~~~v~~vs-~~~-----------------~V~ss~G~~v~~d~~l~~~--~   79 (236)
T 3bhn_A           20 MYKVGIVLFDDFTDVDFFLMNDLLGRTSDSWTVRILG-TKP-----------------EHHSQLGMTVKTDGHVSEV--K   79 (236)
T ss_dssp             CEEEEEECCTTBCHHHHHHHHHHHTTCSSSEEEEEEE-SSS-----------------EEEBTTCCEEECSEEGGGG--G
T ss_pred             CCEEEEEeCCCChHHHHHHHHHHHHcCCCCEEEEEEE-CCC-----------------cEEecCCcEEecCcccccc--c
Confidence            5799999999999999999999999976  7999999 654                 7889999999999988873  5


Q ss_pred             CccEEEEcCC-CCcccccCChHHHHHHHHHHhCCC-eEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCC
Q 027708           86 KYDGLVIPGG-RAPEYLAMNDSVIDLVRKFSNSGK-TIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPE  163 (220)
Q Consensus        86 ~~D~liipGG-~~~~~~~~~~~l~~~l~~~~~~g~-~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~  163 (220)
                      +||+|||||| .++..+..++.+++||  ++++++ +|++||+|+++|+++|||+||++|+||...+.+++.+..+.+. 
T Consensus        80 ~~D~liVPGG~~g~~~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~-  156 (236)
T 3bhn_A           80 EQDVVLITSGYRGIPAALQDENFMSAL--KLDPSRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDL-  156 (236)
T ss_dssp             GCSEEEECCCTTHHHHHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSS-
T ss_pred             CCCEEEEcCCccCHhhhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCC-
Confidence            8999999999 6665567899999999  667777 9999999999999999999999999999999999976677444 


Q ss_pred             CCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccccc-cc-ccceeeec
Q 027708          164 TMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT-GS-DKRILFLC  209 (220)
Q Consensus       164 ~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a-~~-~~~~~~~~  209 (220)
                         .+|+|||+|||+|+++++||++++|+++.|+.. .+ ++.+++..
T Consensus       157 ---~vV~Dg~iiTs~G~~a~~dlal~lIe~l~G~~~A~~va~~l~~~~  201 (236)
T 3bhn_A          157 ---PLVIEGNIATAGGCLSLLYLVGWLAERLFDSVKRKQIQNQLIPAG  201 (236)
T ss_dssp             ---SEEEETTEEEECSGGGHHHHHHHHHHHHSCHHHHHHHHTTTSCTT
T ss_pred             ---cEEEeCCEEECCCHHHHHHHHHHHHHHhcCHHHHHHHHHhcccCC
Confidence               499999999999999999999999998887744 54 55555543

>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2

Probab=100.00  E-value=2.4e-36  Score=240.81  Aligned_cols=172  Identities=23%  Similarity=0.364  Sum_probs=149.1

Q ss_pred             CeEEEEec----------CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccc--------cC
Q 027708            9 RSVLLLCG----------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET--------RG   70 (220)
Q Consensus         9 ~kI~il~~----------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~--------~g   70 (220)
                      +||+|+++          +||+..|+..|+++|+.+|+++.++|+++++                 +..+        .|
T Consensus         6 ~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~~-----------------v~~~~~~~~~~~~~   68 (224)
T 1u9c_A            6 KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGE-----------------VPLDPRSINEKDPS   68 (224)
T ss_dssp             CEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBC-----------------CCBCGGGSSSCCGG
T ss_pred             ceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCCc-----------------cccCccccccHHHH
Confidence            79999999          9999999999999999999999999998752                 2221        13


Q ss_pred             -----cccccCcCcCCCCCCCccEEEEcCCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc------ccC
Q 027708           71 -----HNFALNATFDEIDPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVK  138 (220)
Q Consensus        71 -----~~i~~~~~l~~~~~~~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag------lL~  138 (220)
                           ..+.++..+++++..+||+||||||.+.. .+..++.+.+||+++++++|+|++||+|+++|+++|      ||+
T Consensus        69 ~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~ag~~~g~~lL~  148 (224)
T 1u9c_A           69 WAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVK  148 (224)
T ss_dssp             GHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTT
T ss_pred             HhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHccccCCCceec
Confidence                 56888888988766789999999998764 467899999999999999999999999999999999      999


Q ss_pred             CceEecCCCCHH---------------HHHHCCCeEecCCC-CceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc
Q 027708          139 GRKCTAYPPVKP---------------VLIAAGASWIEPET-MAACVVDGNIITGATYEGHPEFIRLFLKALGGT  197 (220)
Q Consensus       139 g~~~T~~~~~~~---------------~l~~~g~~~~~~~~-~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~  197 (220)
                      ||++|+||..++               .+++.+..+++.+. ...+|+|||+|||+|+.++.+|++++|+++.++
T Consensus       149 Gr~~T~~~~~~~~~~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~liTs~g~~s~~d~al~lv~~l~g~  223 (224)
T 1u9c_A          149 GKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  223 (224)
T ss_dssp             TCEECCSCHHHHHHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             CcEEecCCCHHHhhccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCCEEECCChhhHHHHHHHHHHHHhcc
Confidence            999999998655               46667888876641 124999999999999999999999999998775

>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}

Probab=100.00  E-value=1.7e-35  Score=254.30  Aligned_cols=190  Identities=57%  Similarity=1.083  Sum_probs=163.3

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ++||+|+++|||++.|+..|+++|+++|+++.++++++++....+..+....+. ..+.++.|..+.++..+++++..+|
T Consensus       205 ~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~i~~~~~~~~~~~~~~  283 (396)
T 3uk7_A          205 NKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGD-QTYSEKPGHTFALTTNFDDLVSSSY  283 (396)
T ss_dssp             CCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSS-SSCEEEECCCEECCSCGGGCCGGGC
T ss_pred             cceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCCCCccccccccccccc-chhhhcCCceeeccCCHHHCCcccC
Confidence            479999999999999999999999999999999999876422111222222222 2577889999999999999877899


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCce
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAA  167 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~  167 (220)
                      |+|+||||.++..+..++.+.+||+++++++|+|++||+|+++|+++|||+||++|+||...+.++..+..|++.+....
T Consensus       284 D~livpGg~~~~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~~  363 (396)
T 3uk7_A          284 DALVIPGGRAPEYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGGTWLEPDPIDR  363 (396)
T ss_dssp             SEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSSTTC
T ss_pred             CEEEECCCcchhhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHcCCcCCCEEecCccHHHHHHHCCCEEEcCCCcee
Confidence            99999999876666789999999999999999999999999999999999999999999999999888889988752113


Q ss_pred             EEEcCCEEeCCCCCCHHHHHHHHHHHHcccc
Q 027708          168 CVVDGNIITGATYEGHPEFIRLFLKALGGTI  198 (220)
Q Consensus       168 ~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~  198 (220)
                      +|+|||+|||+|+.++.||++++|++++++.
T Consensus       364 ~v~Dg~iiTs~g~~~~~d~~l~li~~l~~~~  394 (396)
T 3uk7_A          364 CFTDGNLVTGAAWPGHPEFVSQLMALLGIQV  394 (396)
T ss_dssp             EEEETTEEEESSGGGHHHHHHHHHHHHTCEE
T ss_pred             EEEcCCEEECCCchhHHHHHHHHHHHhcccc
Confidence            8999999999999999999999999998864

>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}

Probab=100.00  E-value=1e-35  Score=228.58  Aligned_cols=159  Identities=19%  Similarity=0.341  Sum_probs=140.1

Q ss_pred             CeEEEEecC---C---CCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCC
Q 027708            9 RSVLLLCGD---Y---MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEI   82 (220)
Q Consensus         9 ~kI~il~~~---g---~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~   82 (220)
                      +||+|+++|   |   |+..|+..      ++++++.+++++++.                ++.+++|+.+.++..++++
T Consensus         3 ~~v~ill~~~~~g~~~~~~~e~~~------~~~~~v~~vs~~~~~----------------~v~~~~g~~v~~d~~~~~~   60 (175)
T 3cne_A            3 KKVAVLAVNPVNGCGLFQYLEAFF------ENGISYKVFAVSDTK----------------EIKTNSGMVLIVDDVIANL   60 (175)
T ss_dssp             CEEEEEECSSBCHHHHHHHHHHHH------HTTCEEEEEESSSSS----------------EEEBTTSCEEECSEEGGGG
T ss_pred             cEEEEEEecCcCCCccchhhheee------eCCCEEEEEECCCCC----------------ceecCCCeEEEeccCHHHh
Confidence            799999999   9   77777666      689999999987421                7889999999999999887


Q ss_pred             --CCCCccEEEEcCC--C-Cccccc---CChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHH
Q 027708           83 --DPTKYDGLVIPGG--R-APEYLA---MNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIA  154 (220)
Q Consensus        83 --~~~~~D~liipGG--~-~~~~~~---~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~  154 (220)
                        ++.+||+||||||  . ++..+.   .++.+.+||+++++++|+|++||+|+++|+++|||+||++|+||...+.+++
T Consensus        61 ~~~~~~~D~livpGG~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~aGlL~G~~~T~~~~~~~~l~~  140 (175)
T 3cne_A           61 KGHEDEFDALVFSCGDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQN  140 (175)
T ss_dssp             TTCGGGCSEEEEECCTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHTTTTTTCEEECCGGGGGGCCS
T ss_pred             ccCcccCCEEEECCCcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCcCCCEEEeCccHHHHhhc
Confidence              5678999999999  5 665555   6789999999999999999999999999999999999999999998888866


Q ss_pred             CCCeEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHc
Q 027708          155 AGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALG  195 (220)
Q Consensus       155 ~g~~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~  195 (220)
                        ..+.+.    .+++|||+|||+|+.+++||++++|+++.
T Consensus       141 --~~~~~~----~~v~Dg~iiTs~g~~~~~d~al~li~~l~  175 (175)
T 3cne_A          141 --GIATDE----KSEIDGNFFTAQDENTIWTMLPKVIEALK  175 (175)
T ss_dssp             --SEEESS----SEEEETTEEEESSGGGGGGTHHHHHHHHC
T ss_pred             --CEEeCC----CEEEeCCEEeCCChHHHHHHHHHHHHHhC
Confidence              667654    39999999999999999999999999873

>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*

Probab=100.00  E-value=4.9e-35  Score=235.54  Aligned_cols=191  Identities=19%  Similarity=0.258  Sum_probs=148.3

Q ss_pred             CCeEEEEecC------------CCCchhhHHHHHHHHhCCCeEEEEcCCCCC-CCCCCcccccCCCc-cccc---ccccC
Q 027708            8 KRSVLLLCGD------------YMEDYEAMVPFQALLAFGVSVDAACPGKKS-GDVCPTAVHQSTGH-QQTY---SETRG   70 (220)
Q Consensus         8 ~~kI~il~~~------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~-~~~~~~~~~~~~~~-~~~v---~~~~g   70 (220)
                      |+||+|++.+            ||+..|+..|+++|+++|++|+++|++++. .++..+......+. .+.+   .++.+
T Consensus         3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   82 (244)
T 3kkl_A            3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN   82 (244)
T ss_dssp             CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH
T ss_pred             CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHH
Confidence            4699999973            788899999999999999999999998653 11111110000000 0011   12345


Q ss_pred             cccccCcCcCCCCCCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC-------cccCCceE
Q 027708           71 HNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKC  142 (220)
Q Consensus        71 ~~i~~~~~l~~~~~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a-------glL~g~~~  142 (220)
                      ..+.++..++++++.+||+||||||.++ ..+..++.+.+||+++++++|+|++||+|+++|+++       |||+||++
T Consensus        83 ~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a~~~~~g~gll~G~~~  162 (244)
T 3kkl_A           83 KALARIKTANEVNASDYKVFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAI  162 (244)
T ss_dssp             HHHHTCEEGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTTCEE
T ss_pred             HHhcCCCChHHCCHhhCCEEEEcCCCchhhhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhhccccCCceeCCcee
Confidence            6788899999998889999999999875 457789999999999999999999999999999999       99999999


Q ss_pred             ecCCCCHH-------------------HHHHCCCeEecC--CCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHcccc
Q 027708          143 TAYPPVKP-------------------VLIAAGASWIEP--ETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTI  198 (220)
Q Consensus       143 T~~~~~~~-------------------~l~~~g~~~~~~--~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~  198 (220)
                      |+||..++                   .+++.|+.|++.  +.+..+|+|||+||++|+.++.+|++++|+.+..-+
T Consensus       163 T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~gp~sa~~~a~~lv~~l~~~~  239 (244)
T 3kkl_A          163 TGFPLEGEIALGVDDILRSRKLTTVERVANKNGAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYSVE  239 (244)
T ss_dssp             CCSCHHHHHHHTTHHHHHHTTCCCHHHHHHTTTCEECCCSSTTSCCEEEETTEEEESSGGGHHHHHHHHHHHHTC--
T ss_pred             cCCCcHHHHhhhhhhhccccccccHHHHHHHCCCEEecCCCCCCCCEEEeCCEEECCChHHHHHHHHHHHHHHhhhh
Confidence            99998743                   345568999874  112259999999999999999999999999987643

>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A

Probab=100.00  E-value=8.7e-35  Score=234.49  Aligned_cols=184  Identities=21%  Similarity=0.288  Sum_probs=146.5

Q ss_pred             CeEEEEec------------CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCc-----cccc----cc
Q 027708            9 RSVLLLCG------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-----QQTY----SE   67 (220)
Q Consensus         9 ~kI~il~~------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-----~~~v----~~   67 (220)
                      +||+|++.            +|++..|+..|+++|+.+|++|+++|+++++.    +...+....     ...+    .+
T Consensus         4 ~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~~~----~d~~s~~~~~~~~~~~~~~~~~~~   79 (243)
T 1rw7_A            4 KKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFG----WDEHSLAKDFLNGQDETDFKNKDS   79 (243)
T ss_dssp             CEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCC----BCGGGGSTTTSCHHHHHHHHCTTS
T ss_pred             ceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCCCC----cCcccccccccChHHHHHHHhhhH
Confidence            58999997            68888999999999999999999999987521    111111000     0000    11


Q ss_pred             ccCcccccCcCcCCCCCCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc-------ccCC
Q 027708           68 TRGHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-------VVKG  139 (220)
Q Consensus        68 ~~g~~i~~~~~l~~~~~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag-------lL~g  139 (220)
                      +.|..+.++..+++++..+||+||||||.++ ..+..++.+.+||+++++++|+|++||+|+++|+++|       ||+|
T Consensus        80 ~~g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~ag~~~~g~~lL~G  159 (243)
T 1rw7_A           80 DFNKTLAKIKTPKEVNADDYQIFFASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGLTDKKTGRPLIEG  159 (243)
T ss_dssp             HHHHHHHTCBCGGGCCGGGEEEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTSSBTTTT
T ss_pred             HHHhhhccCCChHHCCHhhCcEEEECCCCCchhhcccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhcCcccCCceeeCC
Confidence            3466788888999887778999999999875 3467899999999999999999999999999999999       9999


Q ss_pred             ceEecCCCCHHH-------------------HHHCCCeEecC--CCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHcc
Q 027708          140 RKCTAYPPVKPV-------------------LIAAGASWIEP--ETMAACVVDGNIITGATYEGHPEFIRLFLKALGG  196 (220)
Q Consensus       140 ~~~T~~~~~~~~-------------------l~~~g~~~~~~--~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~  196 (220)
                      |++|+||..++.                   +++.|+.++..  +-+..+|+|||+|||+|+.++++|++++|+++..
T Consensus       160 ~~~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~liT~~g~~s~~d~al~lv~~l~~  237 (243)
T 1rw7_A          160 KSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALKN  237 (243)
T ss_dssp             CEECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHCCC-
T ss_pred             cEEeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCCEEECCChhHHHHHHHHHHHHHhh
Confidence            999999986554                   55568888742  0022599999999999999999999999997753

>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0

Probab=100.00  E-value=2.5e-34  Score=231.54  Aligned_cols=186  Identities=23%  Similarity=0.331  Sum_probs=148.9

Q ss_pred             CCeEEEEecC------------CCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCc-----c-ccccc--
Q 027708            8 KRSVLLLCGD------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGH-----Q-QTYSE--   67 (220)
Q Consensus         8 ~~kI~il~~~------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~-----~-~~v~~--   67 (220)
                      |+||+|++.+            ||+..|+..|+++|+++|++|+++|++++.    .+..++....     . ..+..  
T Consensus         9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g~~----~~d~~s~~~~~~~~~~~~~~~~~~   84 (247)
T 3n7t_A            9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTF----GWDEHSLTQEYLSKEDEKVLHSEH   84 (247)
T ss_dssp             CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSSCC----CBCSGGGSGGGCCHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCCCc----ccCcccccccccCHHHHHHHHhhh
Confidence            3799999986            888999999999999999999999998652    1111111100     0 00111  


Q ss_pred             -ccCccccc-CcCcCCCCCCCccEEEEcCCCCc-ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC------cccC
Q 027708           68 -TRGHNFAL-NATFDEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA------DVVK  138 (220)
Q Consensus        68 -~~g~~i~~-~~~l~~~~~~~~D~liipGG~~~-~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a------glL~  138 (220)
                       +.+..+.+ +..+++++..+||+||||||+++ ..+..++.+.+||+++++++|+|++||+|+++|+++      |||+
T Consensus        85 ~~~~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a~~~~g~gll~  164 (247)
T 3n7t_A           85 NHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIK  164 (247)
T ss_dssp             CHHHHHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGCBCTTSSBTTT
T ss_pred             HHHHHHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHhhcccCCcccc
Confidence             12334666 88899988889999999999986 457889999999999999999999999999999999      9999


Q ss_pred             CceEecCCCCHH-------------------HHHHCCCeEecCC--CCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc
Q 027708          139 GRKCTAYPPVKP-------------------VLIAAGASWIEPE--TMAACVVDGNIITGATYEGHPEFIRLFLKALGGT  197 (220)
Q Consensus       139 g~~~T~~~~~~~-------------------~l~~~g~~~~~~~--~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~  197 (220)
                      ||++|+||..++                   .+++.|+.|++..  .+..+|+|||+||++|+.++.+|++++|+.|...
T Consensus       165 G~~~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~lITg~~p~sa~~~a~~lv~~L~~~  244 (247)
T 3n7t_A          165 DKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGI  244 (247)
T ss_dssp             TCEECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHHH
T ss_pred             CceecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCCEEECCChHHHHHHHHHHHHHHhhh
Confidence            999999998753                   3555789998741  1235999999999999999999999999988653

>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A

Probab=100.00  E-value=2e-34  Score=237.77  Aligned_cols=189  Identities=16%  Similarity=0.221  Sum_probs=151.3

Q ss_pred             CCeEEEEecC--------------CCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCccccccccc---C
Q 027708            8 KRSVLLLCGD--------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR---G   70 (220)
Q Consensus         8 ~~kI~il~~~--------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~---g   70 (220)
                      +|||+|++.+              ||+..|+..|+++|+.+|++|+++|+++++.....++   ....+..+.++.   |
T Consensus        48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~~v~~d~~s---~~~~~~~~~~~~~~~g  124 (291)
T 1n57_A           48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWA---MPHKDEKVMPFFEQHK  124 (291)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSCCCCBCGGG---CCTTCTTHHHHHHHHH
T ss_pred             CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCcccccccc---cccccHHHHHHHHhcc
Confidence            4799999985              7999999999999999999999999987632111121   111111333333   7


Q ss_pred             cccccCcCcCCC-----CCCCccEEEEcCCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc----ccCCc
Q 027708           71 HNFALNATFDEI-----DPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD----VVKGR  140 (220)
Q Consensus        71 ~~i~~~~~l~~~-----~~~~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag----lL~g~  140 (220)
                      ..+.++..++++     +..+||+||||||+++. .+..++.+++||+++++++++|++||+|+++|++++    ||+||
T Consensus       125 ~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~~~~GLL~Gr  204 (291)
T 1n57_A          125 SLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGY  204 (291)
T ss_dssp             HHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTC
T ss_pred             ceecCCccHHHHhhhccCcccCCEEEecCCcchhhhhhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhcccCccCCCC
Confidence            788898888873     45789999999998876 577899999999999999999999999999988874    99999


Q ss_pred             eEecCCCCHHHH-------------------HHCCCeEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccccc
Q 027708          141 KCTAYPPVKPVL-------------------IAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGTIT  199 (220)
Q Consensus       141 ~~T~~~~~~~~l-------------------~~~g~~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~a  199 (220)
                      ++|+||...+.+                   ++.|+.+++.+.+..+|+|||+|||+|+.++++|++++|+.+.++..
T Consensus       205 ~~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~lITs~gp~s~~d~al~lve~l~g~~~  282 (291)
T 1n57_A          205 SICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAAYA  282 (291)
T ss_dssp             EECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHHHC
T ss_pred             EEEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCCEEECCCHHHHHHHHHHHHHHHhCchh
Confidence            999999877654                   34577887422223599999999999999999999999999887744

>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A

Probab=100.00  E-value=2.7e-33  Score=224.33  Aligned_cols=179  Identities=20%  Similarity=0.248  Sum_probs=144.4

Q ss_pred             CCeEEEEec-----CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccC------
Q 027708            8 KRSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALN------   76 (220)
Q Consensus         8 ~~kI~il~~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~------   76 (220)
                      ++||+|+++     +||+..|+..|+++|+.+|+++.++|+++++..  .+.  ..++.  ++.++.|+.+.++      
T Consensus         6 m~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g~~~~--v~d--~~s~~--~~~~~~g~~i~~~~~~~~~   79 (232)
T 1vhq_A            6 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVD--VIN--HLTGE--AMTETRNVLIEAARITRGE   79 (232)
T ss_dssp             CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSC--CBC--TTTCC--BCSCCCBHHHHHTTTTTTC
T ss_pred             CCeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCCCc--ccc--ccccc--chhhhhhhhHHHHHhhhcC
Confidence            479999999     999999999999999999999999999875310  000  11111  4567778877776      


Q ss_pred             -cCcCCCCCCCccEEEEcCCCCcc-----------cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccC-CceEe
Q 027708           77 -ATFDEIDPTKYDGLVIPGGRAPE-----------YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVK-GRKCT  143 (220)
Q Consensus        77 -~~l~~~~~~~~D~liipGG~~~~-----------~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~-g~~~T  143 (220)
                       ..+++++..+||+||||||.++.           .+..++.+.+||++++++|++|++||+|+++|+++  |+ ||++|
T Consensus        80 ~~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a--L~~Gr~~T  157 (232)
T 1vhq_A           80 IRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKI--FDFPLRLT  157 (232)
T ss_dssp             CEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHH--CSSCCEEC
T ss_pred             CCCHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHH--hcCCCEEe
Confidence             78888766789999999998652           12248999999999999999999999999999999  79 99999


Q ss_pred             cC-C-CCHHHHHHCCCeEecCCCCceEEE-cCCEEeCCCCCCHHHHHHHHHHHHcccc
Q 027708          144 AY-P-PVKPVLIAAGASWIEPETMAACVV-DGNIITGATYEGHPEFIRLFLKALGGTI  198 (220)
Q Consensus       144 ~~-~-~~~~~l~~~g~~~~~~~~~~~~v~-dg~iiTs~g~~s~~~~~~~li~~l~~~~  198 (220)
                      +| | ..++.+++.|+.|++.+.+..+++ |||+|||+    ++++++++|+++.|..
T Consensus       158 th~~~~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~----~~d~al~lv~~~~G~~  211 (232)
T 1vhq_A          158 IGTDIDTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP----AYMLAQNIAEAASGID  211 (232)
T ss_dssp             CCSCHHHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC----GGGTCSSHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHcCCEEecCCCCceEEecCCCEEECC----CHHHHHHHHHHHcCHH
Confidence            99 5 667888888999887532223554 59999997    8899999999888774

>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}

Probab=99.97  E-value=1e-31  Score=215.77  Aligned_cols=167  Identities=20%  Similarity=0.234  Sum_probs=135.6

Q ss_pred             CeEEEEec-----CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccC-------
Q 027708            9 RSVLLLCG-----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALN-------   76 (220)
Q Consensus         9 ~kI~il~~-----~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~-------   76 (220)
                      +||+|++.     |||+..|+..|+++|+++|++|+++|+++++..  .+.  ...+  .++.++.|+.+.++       
T Consensus        24 kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~--~~~--~~~g--~~v~~s~g~~v~~d~~~~~~~   97 (242)
T 3l3b_A           24 LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQ--VVD--HKKK--ESVGEVRNILVESARIARGSV   97 (242)
T ss_dssp             CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSC--EEE--TTTT--EEESCCCBHHHHHHHHTTTCE
T ss_pred             CEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCccc--ccc--cccC--ccccccCCeEEecchhccccC
Confidence            79999998     999999999999999999999999999875311  010  1111  15777888888887       


Q ss_pred             cCcCCCCCCCccEEEEcCCCCcc----c--------ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc-ccCCceEe
Q 027708           77 ATFDEIDPTKYDGLVIPGGRAPE----Y--------LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD-VVKGRKCT  143 (220)
Q Consensus        77 ~~l~~~~~~~~D~liipGG~~~~----~--------~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag-lL~g~~~T  143 (220)
                      ..++++++.+||+||||||.+..    .        +..++.+.+||+++++++|+|++||+|+++|+++| ||+||++|
T Consensus        98 ~~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag~lL~Gr~~T  177 (242)
T 3l3b_A           98 YDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALLKDIAKVKVT  177 (242)
T ss_dssp             EEGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHHTTTCCCEEC
T ss_pred             CChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhCcccCCCEEE
Confidence            67888877899999999997631    1        25689999999999999999999999999999999 99999999


Q ss_pred             cCCCCHHHHHHCCCeEecCCCCceEEEc--CCEEeCCCCCC
Q 027708          144 AYPPVKPVLIAAGASWIEPETMAACVVD--GNIITGATYEG  182 (220)
Q Consensus       144 ~~~~~~~~l~~~g~~~~~~~~~~~~v~d--g~iiTs~g~~s  182 (220)
                      +||.....+++.|+.|++.+. ..+|+|  ||+|||++...
T Consensus       178 ~~~~~~~~l~~~Ga~~~~~~~-~~vVvD~~g~liTs~a~~~  217 (242)
T 3l3b_A          178 IGEDSNGLIDKMGGVHVDCPT-IKSVKDDVNRIFSCSAYMR  217 (242)
T ss_dssp             CCC----CHHHHTCEECCCCT-TCCEEETTTTEEEECGGGS
T ss_pred             ecCChHHHHHHCCCEEEcCCC-CeEEEECCCCEEECcCccc
Confidence            999988778888999998531 137888  99999998754

>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3

Probab=99.91  E-value=2.2e-24  Score=194.76  Aligned_cols=151  Identities=18%  Similarity=0.230  Sum_probs=131.5

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ++||+||++||++..|+..++++|+.+|+++.+++++++                 +|.++.|..+.++..+++++..+|
T Consensus       534 ~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg-----------------~V~ss~G~~v~~d~~l~~v~~~~y  596 (715)
T 1sy7_A          534 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-----------------KVTAANGSTVQPHHHLEGFRSTMV  596 (715)
T ss_dssp             TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-----------------CEEBTTSCEECCSEETTTCCGGGS
T ss_pred             CCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCC-----------------ceecCCCceEecccccccCCcccC
Confidence            579999999999999999999999999999999999875                 788889999999999998877789


Q ss_pred             cEEEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC-cccCCceEecCCCCHHHHHHCCCeEecCCCC
Q 027708           88 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-DVVKGRKCTAYPPVKPVLIAAGASWIEPETM  165 (220)
Q Consensus        88 D~liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a-glL~g~~~T~~~~~~~~l~~~g~~~~~~~~~  165 (220)
                      |+||||||. ++..+..++.+++||+++++++|+|++||+|+++|+++ ||.+-+.             .|+    .   
T Consensus       597 DaViVPGG~~~~~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlGL~~L~~-------------aGa----~---  656 (715)
T 1sy7_A          597 DAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTV-------------SSE----A---  656 (715)
T ss_dssp             SEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTSCC-------------CCS----S---
T ss_pred             CEEEEcCCcccHhhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccCcHhHHh-------------cCC----C---
Confidence            999999995 45556789999999999999999999999999999999 9843222             222    2   


Q ss_pred             ceEEEcCCEEeCCCCC------------CHHHHHHHHHHHHcc
Q 027708          166 AACVVDGNIITGATYE------------GHPEFIRLFLKALGG  196 (220)
Q Consensus       166 ~~~v~dg~iiTs~g~~------------s~~~~~~~li~~l~~  196 (220)
                       .+|+||++||++|+.            +..+++..+++.+..
T Consensus       657 -~VVvDg~lITs~gp~~~~l~~~~~i~~s~~~fa~~fi~~L~~  698 (715)
T 1sy7_A          657 -EVHESYGVVTLKKVKPESFTDAVKIAKGAAGFLGEFFYAIAQ  698 (715)
T ss_dssp             -SCEEETTEEEESSCCTTTTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             -cEEEeCCEEECCCCcccccccccccccCHHHHHHHHHHHHHc
Confidence             389999999999986            667899999988864

>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...

Probab=99.83  E-value=1e-20  Score=169.69  Aligned_cols=112  Identities=20%  Similarity=0.199  Sum_probs=106.2

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +|||+||+.|||+..|+..++++|+++|.+|.+++++.+                 +|.++.|..+.+|.+++++++.+|
T Consensus       600 grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g-----------------~V~gs~G~~V~aD~t~~~v~s~~f  662 (753)
T 3ttv_A          600 GRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-----------------EVTADDGTVLPIAATFAGAPSLTV  662 (753)
T ss_dssp             TCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-----------------EEECTTSCEEECCEETTTSCGGGC
T ss_pred             CCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCC-----------------eEEeCCCCEEecccchhhCCCcCC
Confidence            589999999999999999999999999999999999765                 789999999999999999987889


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCccc
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV  137 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL  137 (220)
                      |+|||||| ++..+..++.+++||+++++++|+|++||+|+++|+++||-
T Consensus       663 DALVVPGG-g~~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~AGL~  711 (753)
T 3ttv_A          663 DAVIVPCG-NIADIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIA  711 (753)
T ss_dssp             SEEEECCS-CGGGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGGTCC
T ss_pred             CEEEECCC-ChHHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHcCCC
Confidence            99999999 87778899999999999999999999999999999999974

>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*

Probab=99.71  E-value=4.3e-17  Score=145.89  Aligned_cols=129  Identities=18%  Similarity=0.218  Sum_probs=110.1

Q ss_pred             CCeEEEEec--CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708            8 KRSVLLLCG--DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT   85 (220)
Q Consensus         8 ~~kI~il~~--~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~   85 (220)
                      ++||+||+.  +|++..|+..+.+.|+++|.+|.+++++.+                 .         .+|.++++++..
T Consensus       529 g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g-----------------~---------~vD~t~~~~~s~  582 (688)
T 2iuf_A          529 GLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXA-----------------N---------NVDETYSASDAV  582 (688)
T ss_dssp             TCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCC-----------------T---------TCCEESTTCCGG
T ss_pred             CCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCC-----------------c---------ccccchhcCCcc
Confidence            589999999  999999999999999999999999998532                 1         677888888888


Q ss_pred             CccEEEEcCCC-C----------------cccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCC
Q 027708           86 KYDGLVIPGGR-A----------------PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPV  148 (220)
Q Consensus        86 ~~D~liipGG~-~----------------~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~  148 (220)
                      +||+||||||. +                +..+..+++++++|++++++||+|++||+|+.+|.++|+..          
T Consensus       583 ~fDAVvlPGG~~g~~~~~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~aGi~~----------  652 (688)
T 2iuf_A          583 QFDAVVVADGAEGLFGADSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESGQISS----------  652 (688)
T ss_dssp             GCSEEEECTTCGGGCCTTTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHTTCCT----------
T ss_pred             ccCeEEecCCCcccccccccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHcCCCC----------
Confidence            99999999995 4                55688899999999999999999999999999999999854          


Q ss_pred             HHHHHHCCCeEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHc
Q 027708          149 KPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALG  195 (220)
Q Consensus       149 ~~~l~~~g~~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~  195 (220)
                                           .|+++||+.++  .-+++..+++.+.
T Consensus       653 ---------------------~d~GVvts~~~--~~~f~~~fi~~la  676 (688)
T 2iuf_A          653 ---------------------ERQGVYTGKNA--GDAFAKDIKSGLS  676 (688)
T ss_dssp             ---------------------TSTTEEEESSS--SHHHHHHHHHHHH
T ss_pred             ---------------------CCCCEEEcCCc--cHHHHHHHHHHHH
Confidence                                 15667887776  4457777777654

>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}

Probab=99.66  E-value=4.4e-16  Score=139.10  Aligned_cols=104  Identities=18%  Similarity=0.151  Sum_probs=93.6

Q ss_pred             CCeEEEEecCC-CCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708            8 KRSVLLLCGDY-MEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus         8 ~~kI~il~~~g-~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      +|||+||+.+| ++..|+..+.+.|+++|..|.+++++.+                      .|    +|.+++++++.+
T Consensus       537 grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g----------------------~G----vD~t~~~~~s~~  590 (688)
T 3ej6_A          537 TLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA----------------------SG----VDQTYSAADATA  590 (688)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC----------------------TT----CCEETTTCCGGG
T ss_pred             CCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC----------------------CC----cccCcccCChhc
Confidence            68999999999 9999999999999999999999998642                      13    688899988889


Q ss_pred             ccEEEEcCCCCc--------ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCccc
Q 027708           87 YDGLVIPGGRAP--------EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVV  137 (220)
Q Consensus        87 ~D~liipGG~~~--------~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL  137 (220)
                      ||+|+||||...        ..+..++++++||+++++++|+|++||+|+++|.++|+-
T Consensus       591 fDAVvlPGG~~~~~~~~~~~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~AGI~  649 (688)
T 3ej6_A          591 FDAVVVAEGAERVFSGKGAMSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSIGVE  649 (688)
T ss_dssp             CSEEEECTTCCTTTSTTTTCCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHTTCC
T ss_pred             CcEEEECCCcccccccccchhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHcCCC
Confidence            999999999642        567889999999999999999999999999999999973

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=99.25  E-value=6.9e-12  Score=98.26  Aligned_cols=93  Identities=23%  Similarity=0.307  Sum_probs=73.3

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|+.++++...  ..+.+.|+.+|+++.+++..                                   +  ...++|
T Consensus         3 ~~i~il~~~~~~~~--~~~~~~l~~~g~~~~~~~~~-----------------------------------~--~~~~~d   43 (213)
T 3d54_D            3 PRACVVVYPGSNCD--RDAYHALEINGFEPSYVGLD-----------------------------------D--KLDDYE   43 (213)
T ss_dssp             CEEEEECCTTEEEH--HHHHHHHHTTTCEEEEECTT-----------------------------------C--CCSSCS
T ss_pred             cEEEEEEcCCCCcc--HHHHHHHHHCCCEEEEEecC-----------------------------------C--CcccCC
Confidence            69999999998741  23589999999988776421                                   1  124799


Q ss_pred             EEEEcCCCCcc-c-----ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCc
Q 027708           89 GLVIPGGRAPE-Y-----LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGR  140 (220)
Q Consensus        89 ~liipGG~~~~-~-----~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~  140 (220)
                      .||||||.+.. .     +..++.+.+||+++.+++++|.+||.|.++|+.+|+|+|+
T Consensus        44 ~lil~Gg~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~  101 (213)
T 3d54_D           44 LIILPGGFSYGDYLRPGAVAAREKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGA  101 (213)
T ss_dssp             EEEECEECGGGGCSSTTHHHHTSTTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSE
T ss_pred             EEEECCCCchhhhhccccccccHHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCC
Confidence            99999996532 2     1234678999999999999999999999999999999984

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=98.57  E-value=4.6e-07  Score=71.93  Aligned_cols=92  Identities=17%  Similarity=0.265  Sum_probs=66.9

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      ||++|..+.++  .+..+.+.|...|.++.++....+                        -      .+.+ +..+||+
T Consensus         2 ~i~vi~h~~~e--~~g~~~~~l~~~g~~~~~~~~~~~------------------------~------~~p~-~~~~~d~   48 (236)
T 3l7n_A            2 RIHFILHETFE--APGAYLAWAALRGHDVSMTKVYRY------------------------E------KLPK-DIDDFDM   48 (236)
T ss_dssp             EEEEEECCTTS--CCHHHHHHHHHTTCEEEEEEGGGT------------------------C------CCCS-CGGGCSE
T ss_pred             eEEEEeCCCCC--CchHHHHHHHHCCCeEEEEeeeCC------------------------C------CCCC-CccccCE
Confidence            89999988877  445556778999999888754221                        0      1111 1247999


Q ss_pred             EEEcCCCCc-ccccCC------hHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           90 LVIPGGRAP-EYLAMN------DSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        90 liipGG~~~-~~~~~~------~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |||+||++. .....+      ..+.++|+++.+.++||.+||.|.++|+.+
T Consensus        49 lii~GGp~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~  100 (236)
T 3l7n_A           49 LILMGGPQSPSSTKKEFPYYDAQAEVKLIQKAAKSEKIIVGVCLGAQLMGVA  100 (236)
T ss_dssp             EEECCCSSCTTCCTTTCTTCCHHHHHHHHHHHHHTTCEEEEETHHHHHHHHH
T ss_pred             EEECCCCCCcccccccCcccchHHHHHHHHHHHHcCCCEEEEchHHHHHHHH
Confidence            999999753 211111      348899999999999999999999999875

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=98.56  E-value=2.7e-07  Score=73.98  Aligned_cols=93  Identities=17%  Similarity=0.181  Sum_probs=67.4

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      |+|+||..+.++  ........|+..|+++.++....+.                        .+ |    ++  ..++|
T Consensus         4 ~~vliiqh~~~e--~~~~i~~~l~~~G~~v~v~~~~~~~------------------------~~-p----~~--~~~~d   50 (250)
T 3m3p_A            4 KPVMIIQFSASE--GPGHFGDFLAGEHIPFQVLRMDRSD------------------------PL-P----AE--IRDCS   50 (250)
T ss_dssp             CCEEEEESSSSC--CCHHHHHHHHHTTCCEEEEEGGGTC------------------------CC-C----SC--GGGSS
T ss_pred             CeEEEEECCCCC--CHHHHHHHHHHCCCeEEEEeccCCC------------------------cC-c----Cc--cccCC
Confidence            579999888777  4555566799999998887643210                        00 0    11  24799


Q ss_pred             EEEEcCCCCc-cc-ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAP-EY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~-~~-~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .|||+||... .. ......+.++|+++.+.++||.+||.|..+|+.+
T Consensus        51 ~lIl~GGp~~~~d~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qll~~~   98 (250)
T 3m3p_A           51 GLAMMGGPMSANDDLPWMPTLLALIRDAVAQRVPVIGHCLGGQLLAKA   98 (250)
T ss_dssp             EEEECCCSSCTTSCCTTHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EEEECCCCCcccccchHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            9999999752 21 2223567899999999999999999999999875

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=98.56  E-value=5.3e-08  Score=76.53  Aligned_cols=86  Identities=22%  Similarity=0.381  Sum_probs=62.4

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      .++|+|+.+++    .+....+.|+.+|.++.+++..                                   +++  .++
T Consensus        23 ~~~I~il~~~~----~~~~~~~~l~~~G~~~~~~~~~-----------------------------------~~l--~~~   61 (219)
T 1q7r_A           23 NMKIGVLGLQG----AVREHVRAIEACGAEAVIVKKS-----------------------------------EQL--EGL   61 (219)
T ss_dssp             CCEEEEESCGG----GCHHHHHHHHHTTCEEEEECSG-----------------------------------GGG--TTC
T ss_pred             CCEEEEEeCCC----CcHHHHHHHHHCCCEEEEECCH-----------------------------------HHH--hhC
Confidence            46899997654    2333568899999987776420                                   112  369


Q ss_pred             cEEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||+|||....  .+..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        62 Dglil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~QlL~~~  110 (219)
T 1q7r_A           62 DGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR  110 (219)
T ss_dssp             SEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             CEEEECCCChHHHHHHhhhhHHHHHHHHHHHcCCeEEEECHHHHHHHHH
Confidence            999999997422  12223455789999999999999999999999875

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=98.54  E-value=6.5e-08  Score=74.59  Aligned_cols=85  Identities=24%  Similarity=0.358  Sum_probs=60.8

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|+-+.+    .+....+.|+++|.++.++++.                                   ++  ..++|
T Consensus         2 m~I~il~~~~----~~~~~~~~l~~~g~~~~~~~~~-----------------------------------~~--l~~~d   40 (196)
T 2nv0_A            2 LTIGVLGLQG----AVREHIHAIEACGAAGLVVKRP-----------------------------------EQ--LNEVD   40 (196)
T ss_dssp             CEEEEECSSS----CCHHHHHHHHHTTCEEEEECSG-----------------------------------GG--GGGCS
T ss_pred             cEEEEEEccC----CcHHHHHHHHHCCCEEEEeCCh-----------------------------------HH--HhhCC
Confidence            5899997522    2333458999999887766420                                   11  23699


Q ss_pred             EEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .|++|||....  .+..+..+.++|+++.++++||.+||.|..+|+.+
T Consensus        41 ~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilgIC~G~q~l~~~   88 (196)
T 2nv0_A           41 GLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (196)
T ss_dssp             EEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             EEEECCCChhhHHHHhhhHHHHHHHHHHHHCCCcEEEECHHHHHHHHH
Confidence            99999996421  12223445789999999999999999999999875

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=98.48  E-value=4e-07  Score=70.40  Aligned_cols=86  Identities=24%  Similarity=0.226  Sum_probs=61.9

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|+-+ ++.  .+....+.|+.+|.++.+++..                                   ++  ..++|
T Consensus         3 ~~I~iid~-~~~--~~~~~~~~l~~~G~~~~~~~~~-----------------------------------~~--l~~~d   42 (200)
T 1ka9_H            3 MKALLIDY-GSG--NLRSAAKALEAAGFSVAVAQDP-----------------------------------KA--HEEAD   42 (200)
T ss_dssp             CEEEEECS-SCS--CHHHHHHHHHHTTCEEEEESST-----------------------------------TS--CSSCS
T ss_pred             cEEEEEeC-CCc--cHHHHHHHHHHCCCeEEEecCh-----------------------------------HH--cccCC
Confidence            58988844 322  3455689999999887776320                                   11  23699


Q ss_pred             EEEEcCCCCccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .|++||+..+..   ...+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        43 ~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~   91 (200)
T 1ka9_H           43 LLVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   91 (200)
T ss_dssp             EEEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             EEEECCCCcHHHHHHHHHhcCHHHHHHHHHHcCCeEEEEcHHHHHHHHh
Confidence            999999544321   1123557899999999999999999999999987

>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*

Probab=98.43  E-value=1.3e-06  Score=84.05  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=71.8

Q ss_pred             CCeEEEEecCCCCc-hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708            8 KRSVLLLCGDYMED-YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus         8 ~~kI~il~~~g~~~-~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      ++||+|+.|+|.+- .+   ....|+.+|+++.++..+.                           +..+  -.  ...+
T Consensus      1047 ~pkVaIi~~~G~N~~~~---~~~A~~~aG~~~~~v~~~d---------------------------l~~~--~~--~l~~ 1092 (1303)
T 3ugj_A         1047 RPKVAVLREQGVNSHVE---MAAAFHRAGFDAIDVHMSD---------------------------LLGG--RI--GLGN 1092 (1303)
T ss_dssp             CCEEEEEECTTCCCHHH---HHHHHHHTTCEEEEEEHHH---------------------------HHTT--SC--CGGG
T ss_pred             CCEEEEEecCCcCCHHH---HHHHHHHhCCceEEEeecc---------------------------cccC--cc--cHhh
Confidence            46999999999884 44   4457888999877653210                           0000  01  1247


Q ss_pred             ccEEEEcCCCCccc-----------ccCChHHHHHHHHHH-hCCCeEEEEehHHHHHHhC-cccCCc
Q 027708           87 YDGLVIPGGRAPEY-----------LAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAA-DVVKGR  140 (220)
Q Consensus        87 ~D~liipGG~~~~~-----------~~~~~~l~~~l~~~~-~~g~~i~aic~G~~~La~a-glL~g~  140 (220)
                      +|.|++|||....+           ...++.+.+.+++++ ++++++.+||+|.++|.++ |||.|.
T Consensus      1093 ~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~~gllPg~ 1159 (1303)
T 3ugj_A         1093 FHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPGS 1159 (1303)
T ss_dssp             CSEEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTTC
T ss_pred             CCEEEECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHhcCcCCCC
Confidence            99999999964211           235677888899876 6899999999999999999 999986

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=98.42  E-value=1.7e-07  Score=73.01  Aligned_cols=86  Identities=20%  Similarity=0.305  Sum_probs=61.7

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      .+||+|+-+++    .+....+.|+.+|.++.+++..                                   +++  .++
T Consensus        20 ~~~I~ii~~~~----~~~~~~~~l~~~g~~~~~~~~~-----------------------------------~~l--~~~   58 (208)
T 2iss_D           20 HMKIGVLGVQG----DVREHVEALHKLGVETLIVKLP-----------------------------------EQL--DMV   58 (208)
T ss_dssp             CCEEEEECSSS----CHHHHHHHHHHTTCEEEEECSG-----------------------------------GGG--GGC
T ss_pred             CcEEEEEECCC----chHHHHHHHHHCCCEEEEeCCh-----------------------------------HHH--hhC
Confidence            46899996533    5566778888899887766421                                   012  369


Q ss_pred             cEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||+|||.....  +..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        59 d~iil~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~  107 (208)
T 2iss_D           59 DGLILPGGESTTMIRILKEMDMDEKLVERINNGLPVFATCAGVILLAKR  107 (208)
T ss_dssp             SEEEECSSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHEEE
T ss_pred             CEEEECCCcHHHHHhhhhhhhHHHHHHHHHHCCCeEEEECHHHHHHHHH
Confidence            9999999843211  1112346789999999999999999999999875

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.38  E-value=2.6e-07  Score=70.77  Aligned_cols=85  Identities=24%  Similarity=0.299  Sum_probs=62.6

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      ++|+|+..++    .+....+.|+.+|.++.+++..                                   ++  .+++|
T Consensus         3 p~Igi~~~~~----~~~~~~~~l~~~G~~~~~~~~~-----------------------------------~~--l~~~d   41 (191)
T 2ywd_A            3 GVVGVLALQG----DFREHKEALKRLGIEAKEVRKK-----------------------------------EH--LEGLK   41 (191)
T ss_dssp             CCEEEECSSS----CHHHHHHHHHTTTCCCEEECSG-----------------------------------GG--GTTCS
T ss_pred             cEEEEEecCC----chHHHHHHHHHCCCEEEEeCCh-----------------------------------hh--hccCC
Confidence            5899998864    4567788999999876665320                                   01  13689


Q ss_pred             EEEEcCCCCc--ccccCChHHHHHHHHHHhCC-CeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAP--EYLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~--~~~~~~~~l~~~l~~~~~~g-~~i~aic~G~~~La~a  134 (220)
                      .|++|||...  ..+..+..+.++|+++.+++ +||.+||.|.++|+.+
T Consensus        42 glil~GG~~~~~~~~~~~~~~~~~i~~~~~~~~~PilGiC~G~Q~l~~~   90 (191)
T 2ywd_A           42 ALIVPGGESTTIGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWLAKE   90 (191)
T ss_dssp             EEEECSSCHHHHHHHHHHTTHHHHHHHHHHTTCCEEEEETHHHHHHEEE
T ss_pred             EEEECCCChhhhHHhhhhhhHHHHHHHHHHCCCCeEEEECHHHHHHHHH
Confidence            9999999521  22222345688999999999 9999999999999875

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=98.29  E-value=1.6e-06  Score=66.29  Aligned_cols=86  Identities=16%  Similarity=0.302  Sum_probs=61.1

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL   90 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l   90 (220)
                      |+|+=+.+-.   ...+.+.|+.+|.++.++....                                .++++...++|.|
T Consensus         3 i~iid~~~~~---~~~~~~~l~~~G~~~~~~~~~~--------------------------------~~~~~~~~~~dgl   47 (189)
T 1wl8_A            3 IVIMDNGGQY---VHRIWRTLRYLGVETKIIPNTT--------------------------------PLEEIKAMNPKGI   47 (189)
T ss_dssp             EEEEECSCTT---HHHHHHHHHHTTCEEEEEETTC--------------------------------CHHHHHHTCCSEE
T ss_pred             EEEEECCCch---HHHHHHHHHHCCCeEEEEECCC--------------------------------ChHHhcccCCCEE
Confidence            6666554432   5577889999999887775421                                1111111259999


Q ss_pred             EEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           91 VIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        91 iipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ++|||..+.   +...+.++++++.+.++||.+||.|.++|+.+
T Consensus        48 il~Gg~~~~---~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~~   88 (189)
T 1wl8_A           48 IFSGGPSLE---NTGNCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (189)
T ss_dssp             EECCCSCTT---CCTTHHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             EECCCCChh---hhhhHHHHHHHHhhCCCeEEEEcHHHHHHHHH
Confidence            999997332   24556889987778999999999999999875

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=98.27  E-value=5e-07  Score=71.23  Aligned_cols=85  Identities=19%  Similarity=0.300  Sum_probs=61.2

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhC---CCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCC
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAF---GVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPT   85 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~a---g~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~   85 (220)
                      ++|+|+.+++.    +....+.|+.+   |.++..++.                    +               +++  +
T Consensus         4 ~~I~Il~~~~~----~~~~~~~l~~~~~~G~~~~~~~~--------------------~---------------~~l--~   42 (227)
T 2abw_A            4 ITIGVLSLQGD----FEPHINHFIKLQIPSLNIIQVRN--------------------V---------------HDL--G   42 (227)
T ss_dssp             EEEEEECTTSC----CHHHHHHHHTTCCTTEEEEEECS--------------------H---------------HHH--H
T ss_pred             cEEEEEeCCCC----cHHHHHHHHHhccCCeEEEEEcC--------------------c---------------ccc--c
Confidence            58999987742    33467888887   766555431                    0               111  2


Q ss_pred             CccEEEEcCCCCcc--cccCC--hHHHHHHHHHHhC-CCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPE--YLAMN--DSVIDLVRKFSNS-GKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~--~~~~~--~~l~~~l~~~~~~-g~~i~aic~G~~~La~a  134 (220)
                      ++|.||+|||....  .+..+  ..+.++|+++.++ ++||.+||.|.++|+.+
T Consensus        43 ~~dglil~GG~~~~~~~~~~~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~   96 (227)
T 2abw_A           43 LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   96 (227)
T ss_dssp             TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             cCCEEEECCCcHHHHHHHHHHhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHH
Confidence            69999999986321  22233  5688999999999 99999999999999875

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=98.07  E-value=6.8e-06  Score=62.58  Aligned_cols=81  Identities=20%  Similarity=0.307  Sum_probs=55.6

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      ||+|+-.++    .+....+.|+.+|.++.+++..                                   ++  ..++|.
T Consensus         2 ~i~vl~~~g----~~~~~~~~l~~~G~~~~~~~~~-----------------------------------~~--~~~~dg   40 (186)
T 2ywj_A            2 IIGVLAIQG----DVEEHEEAIKKAGYEAKKVKRV-----------------------------------ED--LEGIDA   40 (186)
T ss_dssp             EEEEECSSS----CCHHHHHHHHHTTSEEEEECSG-----------------------------------GG--GTTCSE
T ss_pred             EEEEEecCc----chHHHHHHHHHCCCEEEEECCh-----------------------------------HH--hccCCE
Confidence            799996644    3445578999999877665310                                   11  236899


Q ss_pred             EEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           90 LVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        90 liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |++|||.+...  +.....+.++++   ++++||.+||.|.++|+.+
T Consensus        41 lil~GG~~~~~~~~~~~~~~~~~i~---~~~~PilGIC~G~Qll~~~   84 (186)
T 2ywj_A           41 LIIPGGESTAIGKLMKKYGLLEKIK---NSNLPILGTCAGMVLLSKG   84 (186)
T ss_dssp             EEECCSCHHHHHHHHHHTTHHHHHH---TCCCCEEEETHHHHHHSSC
T ss_pred             EEECCCCchhhhhhhhccCHHHHHH---hcCCcEEEECHHHHHHHHH
Confidence            99999965221  111122455555   7899999999999999987

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=98.06  E-value=7e-06  Score=63.32  Aligned_cols=51  Identities=27%  Similarity=0.455  Sum_probs=38.2

Q ss_pred             CCccEEEEcCCCCccc-cc--CChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc
Q 027708           85 TKYDGLVIPGGRAPEY-LA--MNDSVIDLVRKFSNSGKTIASICHGQLILAAAD  135 (220)
Q Consensus        85 ~~~D~liipGG~~~~~-~~--~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag  135 (220)
                      .++|.||+||+..... ..  .+..+.++|+++.++++||.+||.|.++|+.+.
T Consensus        41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~   94 (201)
T 1gpw_B           41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVEDERYVVGVCLGMQLLFEES   94 (201)
T ss_dssp             SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEE
T ss_pred             cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhh
Confidence            3699999999643221 10  111367899999999999999999999999864

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=98.01  E-value=5.7e-06  Score=63.62  Aligned_cols=89  Identities=15%  Similarity=0.130  Sum_probs=57.9

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL   90 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l   90 (220)
                      |+|+=..+..   ...+.+.|+++|.++.++.....                               .++++...++|.|
T Consensus         4 i~iid~~~s~---~~~~~~~l~~~G~~~~v~~~~~~-------------------------------~~~~~~~~~~dgl   49 (195)
T 1qdl_B            4 TLIIDNYDSF---VYNIAQIVGELGSYPIVIRNDEI-------------------------------SIKGIERIDPDRL   49 (195)
T ss_dssp             EEEEECSCSS---HHHHHHHHHHTTCEEEEEETTTS-------------------------------CHHHHHHHCCSEE
T ss_pred             EEEEECCCch---HHHHHHHHHhCCCEEEEEeCCCC-------------------------------CHHHHhhCCCCEE
Confidence            7777643322   34678899999998877754210                               1112211259999


Q ss_pred             EEcCCCCccccc-CChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           91 VIPGGRAPEYLA-MNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        91 iipGG~~~~~~~-~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |++||.+..... +.+...++++++ +.++||.+||.|.++|+.+
T Consensus        50 il~gG~~~~~~~~~~~~~~~~i~~~-~~~~PvLGIC~G~QlL~~~   93 (195)
T 1qdl_B           50 IISPGPGTPEKREDIGVSLDVIKYL-GKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             EECCCSSCTTSHHHHTTHHHHHHHH-TTTSCEEEETHHHHHHHHH
T ss_pred             EECCCCCChhhhhhhhHHHHHHHHh-cCCCcEEEEehHHHHHHHH
Confidence            998886532211 112346888875 7899999999999999875

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=97.99  E-value=1.7e-06  Score=67.30  Aligned_cols=86  Identities=19%  Similarity=0.215  Sum_probs=57.9

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|+=|-.   --+......|+..|.++.++.. .                                  +++  .++|
T Consensus         3 ~~I~iiD~g~---~n~~si~~al~~~G~~~~v~~~-~----------------------------------~~l--~~~D   42 (211)
T 4gud_A            3 QNVVIIDTGC---ANISSVKFAIERLGYAVTISRD-P----------------------------------QVV--LAAD   42 (211)
T ss_dssp             CCEEEECCCC---TTHHHHHHHHHHTTCCEEEECC-H----------------------------------HHH--HHCS
T ss_pred             CEEEEEECCC---ChHHHHHHHHHHCCCEEEEECC-H----------------------------------HHH--hCCC
Confidence            6788874432   2456677889999998776531 0                                  111  2589


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||+||+..+...........+++...+.++||.+||.|.++|+.+
T Consensus        43 ~lilPG~g~~~~~~~~~~~~~~i~~~~~~~~PvlGIClG~QlL~~~   88 (211)
T 4gud_A           43 KLFLPGVGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKL   88 (211)
T ss_dssp             EEEECCCSCHHHHHHHHHHTTCHHHHHHCCSCEEEETHHHHTTSSE
T ss_pred             EEEECCCCCHHHHHHHHHhcChHHHHHHcCCCEEEEchhHhHHHHH
Confidence            9999986554322122233345677778899999999999999865

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=97.93  E-value=2.3e-05  Score=62.25  Aligned_cols=93  Identities=18%  Similarity=0.150  Sum_probs=62.2

Q ss_pred             EEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEE
Q 027708           11 VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGL   90 (220)
Q Consensus        11 I~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~l   90 (220)
                      |-|++..............+|+..|.++.++....                        +     + .+.+ ...++|.|
T Consensus        13 ~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~------------------------~-----~-~~~~-~l~~~Dgl   61 (239)
T 1o1y_A           13 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPK------------------------G-----E-KLER-PLEEYSLV   61 (239)
T ss_dssp             CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGG------------------------T-----C-CCSS-CGGGCSEE
T ss_pred             eEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcC------------------------c-----c-cccc-chhcCCEE
Confidence            44445455555566688889999998876543210                        0     0 1111 12379999


Q ss_pred             EEcCCCC-cccccCC---hHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           91 VIPGGRA-PEYLAMN---DSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        91 iipGG~~-~~~~~~~---~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |+|||.. +..-...   ..+.++|+++.++++||.+||.|.++|+.+
T Consensus        62 il~GG~~~~~~~~~~~~l~~~~~~i~~~~~~~~PiLGIC~G~QlL~~a  109 (239)
T 1o1y_A           62 VLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  109 (239)
T ss_dssp             EECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EECCCCccccCCccChhHHHHHHHHHHHHHCCCCEEEEchhHHHHHHH
Confidence            9999973 2111112   367899999999999999999999999875

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=97.90  E-value=3.1e-05  Score=65.46  Aligned_cols=87  Identities=20%  Similarity=0.241  Sum_probs=63.6

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+++=+ |+.    ......|..+|..+.++..+.                                ..+++...++|
T Consensus       191 ~~V~viD~-G~k----~ni~r~L~~~G~~v~vvp~~~--------------------------------~~e~i~~~~~D  233 (379)
T 1a9x_B          191 FHVVAYDF-GAK----RNILRMLVDRGCRLTIVPAQT--------------------------------SAEDVLKMNPD  233 (379)
T ss_dssp             EEEEEEES-SCC----HHHHHHHHHTTEEEEEEETTC--------------------------------CHHHHHTTCCS
T ss_pred             CEEEEEEC-CCh----HHHHHHHHHCCCEEEEEeccC--------------------------------CHHHHhhcCCC
Confidence            47887777 554    457888999998887763321                                01111112699


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||++||++..  .......++|+++.++++||.+||.|.++|+.+
T Consensus       234 GliLsGGPgdp--~~~~~~~~~Ir~~~~~~~PILGIClG~QLLa~A  277 (379)
T 1a9x_B          234 GIFLSNGPGDP--APCDYAITAIQKFLETDIPVFGICLGHQLLALA  277 (379)
T ss_dssp             EEEECCCSBCS--TTCHHHHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             EEEEeCCCCCh--HHHHHHHHHHHHHHHcCCCEEEECchHHHHHHH
Confidence            99999997532  245788899999999999999999999999875

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=97.75  E-value=5.3e-05  Score=60.65  Aligned_cols=49  Identities=33%  Similarity=0.556  Sum_probs=38.5

Q ss_pred             CccEEEEcCCCCc--ccc-------------cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAP--EYL-------------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~--~~~-------------~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+|.|+++||.+.  ..+             .++...+++|+++.++++||.+||.|.++|+.+
T Consensus        61 ~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~PiLGIC~G~Qll~~a  124 (254)
T 3fij_A           61 LVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVA  124 (254)
T ss_dssp             TCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCCEEEECHHHHHHHHH
Confidence            6999999999651  111             012347899999999999999999999999875

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=97.72  E-value=8.4e-06  Score=63.89  Aligned_cols=87  Identities=16%  Similarity=0.167  Sum_probs=52.3

Q ss_pred             CeEEEEecC-CCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            9 RSVLLLCGD-YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         9 ~kI~il~~~-g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +||+||=+. ++.    ..+...|+.+|.++.++..+..                                .+++...++
T Consensus        25 ~~I~iiD~g~~~~----~~i~~~l~~~G~~~~vv~~~~~--------------------------------~~~l~~~~~   68 (218)
T 2vpi_A           25 GAVVILDAGAQYG----KVIDRRVRELFVQSEIFPLETP--------------------------------AFAIKEQGF   68 (218)
T ss_dssp             TCEEEEECSTTTT----HHHHHHHHHTTCCEEEECTTCC--------------------------------HHHHHHHTC
T ss_pred             CeEEEEECCCchH----HHHHHHHHHCCCEEEEEECCCC--------------------------------hHHHhhcCC
Confidence            689999654 442    4567889999988877643210                                011111369


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||+|||.+...-...+   .+.++..+.++||.+||.|.++|+.+
T Consensus        69 dglil~Gg~~~~~~~~~~---~~~~~~~~~~~PilGIC~G~Qll~~~  112 (218)
T 2vpi_A           69 RAIIISGGPNSVYAEDAP---WFDPAIFTIGKPVLGICYGMQMMNKV  112 (218)
T ss_dssp             SEEEEEC---------CC---CCCGGGGTSSCCEEEETHHHHHHHHH
T ss_pred             CEEEECCCCcccccccch---hHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence            999999997532101111   12234456899999999999999874

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=97.63  E-value=0.00014  Score=56.59  Aligned_cols=87  Identities=21%  Similarity=0.256  Sum_probs=55.0

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ++||.++-+.+-.   .......|+.+|.++.++....                                ..+++  .++
T Consensus        13 ~~~i~~id~~~~~---~~~~~~~l~~~G~~~~vv~~~~--------------------------------~~~~l--~~~   55 (212)
T 2a9v_A           13 MLKIYVVDNGGQW---THREWRVLRELGVDTKIVPNDI--------------------------------DSSEL--DGL   55 (212)
T ss_dssp             CCBEEEEEESCCT---TCHHHHHHHHTTCBCCEEETTS--------------------------------CGGGG--TTC
T ss_pred             cceEEEEeCCCcc---HHHHHHHHHHCCCEEEEEeCCC--------------------------------CHHHH--hCC
Confidence            4578877654332   3346678888887665553210                                12222  249


Q ss_pred             cEEEEcCC-CCccc-ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGG-RAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG-~~~~~-~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||+||| ++... ....+.+.+++   .++++||.+||.|.++|+.+
T Consensus        56 DglIl~GG~p~~~~~~~~~~~l~~~~---~~~~~PiLGIC~G~Qll~~~  101 (212)
T 2a9v_A           56 DGLVLSGGAPNIDEELDKLGSVGKYI---DDHNYPILGICVGAQFIALH  101 (212)
T ss_dssp             SEEEEEEECSCGGGTGGGHHHHHHHH---HHCCSCEEEETHHHHHHHHH
T ss_pred             CEEEECCCCCCCCcccccchhHHHHH---HhCCCCEEEEChHHHHHHHH
Confidence            99999999 54322 11223444444   47899999999999999875

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=97.50  E-value=9.5e-05  Score=65.69  Aligned_cols=88  Identities=20%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      ++|+|+-+..   ..+....+.|+.+|..+.++....                              +   ..  ...+|
T Consensus         5 ~~I~Iid~~~---g~~~~~~~~l~~~G~~~~vv~~~~------------------------------~---~~--l~~~D   46 (555)
T 1jvn_A            5 PVVHVIDVES---GNLQSLTNAIEHLGYEVQLVKSPK------------------------------D---FN--ISGTS   46 (555)
T ss_dssp             CEEEEECCSC---SCCHHHHHHHHHTTCEEEEESSGG------------------------------G---CC--STTCS
T ss_pred             CEEEEEECCC---CCHHHHHHHHHHCCCEEEEECCcc------------------------------c---cc--cccCC
Confidence            4899997641   233567788999998877764210                              0   11  23699


Q ss_pred             EEEEcCCCCcccc---cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPEYL---AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~~~---~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||+|||..+...   ..+..+.++|+++.++++||.+||.|.++|+.+
T Consensus        47 glILpGgG~~~~~~~~l~~~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a   95 (555)
T 1jvn_A           47 RLILPGVGNYGHFVDNLFNRGFEKPIREYIESGKPIMGIXVGLQALFAG   95 (555)
T ss_dssp             CEEEEECSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEEEHHHHTTEEE
T ss_pred             EEEECCCCchHhHhhhhhhccHHHHHHHHHHcCCcEEEEchhhhhhhhh
Confidence            9999995442211   112235789999999999999999999999885

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=97.43  E-value=0.00019  Score=63.35  Aligned_cols=89  Identities=16%  Similarity=0.152  Sum_probs=55.0

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ..||+|+=|..-   -.......|+..|..+.++..+.                                ..+++....+
T Consensus        10 ~~~I~IlD~g~~---~~~~i~r~lr~~Gv~~~i~p~~~--------------------------------~~~~i~~~~~   54 (527)
T 3tqi_A           10 QHRILILDFGSQ---YAQLIARRVREIGVYCELMPCDI--------------------------------DEETIRDFNP   54 (527)
T ss_dssp             CSEEEEEECSCT---THHHHHHHHHHHTCEEEEEETTC--------------------------------CSSSSTTTCC
T ss_pred             CCeEEEEECCCc---cHHHHHHHHHHCCCeEEEEECCC--------------------------------CHHHHHhcCC
Confidence            358888866322   22456778888898777763221                                1122222257


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||+|||++..+   +.......++.++.++||.+||.|.++|+.+
T Consensus        55 dgIILsGGp~sv~---~~~~~~~~~~~~~~~~PvLGIC~G~Qlla~~   98 (527)
T 3tqi_A           55 HGIILSGGPETVT---LSHTLRAPAFIFEIGCPVLGICYGMQTMAYQ   98 (527)
T ss_dssp             SEEEECCCCC------------CCCSTTTSSSCEEEETHHHHHHHHH
T ss_pred             CEEEECCcCcccc---cCCChhhHHHHHhcCCCEEEEChHHHHHHHH
Confidence            9999999975321   2222333455677899999999999999865

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.43  E-value=4.7e-05  Score=59.09  Aligned_cols=48  Identities=19%  Similarity=0.144  Sum_probs=39.5

Q ss_pred             CccEEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           86 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        86 ~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      +.|.|++|||....  .......+.+.|+++.++|++++++|.|+.++++
T Consensus        79 ~ad~I~l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa~~l~~  128 (206)
T 3l4e_A           79 KNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSP  128 (206)
T ss_dssp             HSSEEEECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHHHTTSS
T ss_pred             hCCEEEECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHHHHhcc
Confidence            68999999986432  2234567889999999999999999999999975

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=97.40  E-value=0.00029  Score=58.11  Aligned_cols=96  Identities=16%  Similarity=0.166  Sum_probs=59.6

Q ss_pred             CeEEEEecCCCCc--------hhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcC
Q 027708            9 RSVLLLCGDYMED--------YEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFD   80 (220)
Q Consensus         9 ~kI~il~~~g~~~--------~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~   80 (220)
                      +.|+|+...+...        .-.....+.|+.+|..+.++.....                            + ..+.
T Consensus        31 P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~----------------------------~-~~i~   81 (315)
T 1l9x_A           31 PIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLT----------------------------E-KDYE   81 (315)
T ss_dssp             CEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCC----------------------------H-HHHH
T ss_pred             CEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCC----------------------------H-HHHH
Confidence            5899987643211        1123467888899988877754210                            0 0111


Q ss_pred             CCCCCCccEEEEcCCCC-cccc---cCChHHHHHHHHHHhCC--CeEEEEehHHHHHHhC
Q 027708           81 EIDPTKYDGLVIPGGRA-PEYL---AMNDSVIDLVRKFSNSG--KTIASICHGQLILAAA  134 (220)
Q Consensus        81 ~~~~~~~D~liipGG~~-~~~~---~~~~~l~~~l~~~~~~g--~~i~aic~G~~~La~a  134 (220)
                      +. ..++|.||+|||.+ +...   .....+.++++++.++|  +||.+||.|.++|+.+
T Consensus        82 ~~-l~~~dglil~GG~~~v~p~~~~~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a  140 (315)
T 1l9x_A           82 IL-FKSINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  140 (315)
T ss_dssp             HH-HHHSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             HH-HhcCCEEEEeCCCcccChhhhhHHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHH
Confidence            10 13689999999973 2110   01135677777777665  9999999999999754

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=97.39  E-value=0.00015  Score=59.15  Aligned_cols=45  Identities=16%  Similarity=0.225  Sum_probs=39.1

Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      ++|.||+|||++...   ...+.++++++.+.++||.+||.|.++|+.
T Consensus        90 ~~dgiil~GG~~~~~---~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~  134 (289)
T 2v4u_A           90 KADGILVPGGFGIRG---TLGKLQAISWARTKKIPFLGVXLGMQLAVI  134 (289)
T ss_dssp             HCSEEEECSCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred             hCCEEEecCCCCchh---HHHHHHHHHHHHHcCCcEEEECccHHHHHH
Confidence            689999999976532   367889999999999999999999999987

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=97.34  E-value=5e-05  Score=59.86  Aligned_cols=49  Identities=10%  Similarity=0.150  Sum_probs=39.3

Q ss_pred             CccEEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +.|.||+|||....  .......+.+.|+++.++|++++++|.|+.+|++.
T Consensus        79 ~ad~I~lpGG~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG~~~l~~~  129 (229)
T 1fy2_A           79 KAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPT  129 (229)
T ss_dssp             HCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSSB
T ss_pred             cCCEEEECCCcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHHHHhhccc
Confidence            68999999986432  22334568889999999999999999999999764

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=97.10  E-value=0.0029  Score=57.13  Aligned_cols=89  Identities=19%  Similarity=0.256  Sum_probs=59.9

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      .|+|+|+=+..   .=...+...|+..|..+.++..+.                  +               .  ...++
T Consensus       446 Gk~IlviD~gd---sf~~~l~~~l~~~G~~v~Vv~~d~------------------~---------------~--~~~~~  487 (645)
T 3r75_A          446 GCRALIVDAED---HFTAMIAQQLSSLGLATEVCGVHD------------------A---------------V--DLARY  487 (645)
T ss_dssp             TCEEEEEESSC---THHHHHHHHHHHTTCEEEEEETTC------------------C---------------C--CGGGC
T ss_pred             CCEEEEEECCc---cHHHHHHHHHHHCCCEEEEEECCC------------------c---------------c--cccCC
Confidence            35666554322   123456778888998887764321                  0               0  12368


Q ss_pred             cEEEEcCCCCcccccCCh---HHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEYLAMND---SVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~---~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.|||+||++...-..++   .+.++|++..+.++||.+||-|.++|+.+
T Consensus       488 DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~iPiLGIClG~QlLa~a  537 (645)
T 3r75_A          488 DVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQILNAI  537 (645)
T ss_dssp             SEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             CEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCCCCEEEECHHHHHHHHH
Confidence            999999998643212222   46788899888999999999999999865

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=97.04  E-value=0.0031  Score=51.77  Aligned_cols=56  Identities=16%  Similarity=0.248  Sum_probs=40.9

Q ss_pred             CcCCCCCCCccEEEEcCCCC-ccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           78 TFDEIDPTKYDGLVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        78 ~l~~~~~~~~D~liipGG~~-~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      ++++....+||.+||.|++- ...   ..--.++.++++...++++++.+||-|+.+++.
T Consensus       103 ~f~~~~~~~~DglIITGsP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~  162 (312)
T 2h2w_A          103 TFSAVKDRKFDGFIITGAPVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLY  162 (312)
T ss_dssp             CGGGTTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHH
T ss_pred             CcccccccCcCEEEECCCCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHH
Confidence            34554456899999999973 211   112257888888888899999999999998443

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=97.00  E-value=0.00062  Score=54.98  Aligned_cols=45  Identities=16%  Similarity=0.198  Sum_probs=37.9

Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      ++|.||+|||++..   ..+...++++++.+.++||.+||.|.++|+.
T Consensus        67 ~~dgiil~GG~~~~---~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~  111 (273)
T 2w7t_A           67 GCDGIFVPGGFGNR---GVDGKCAAAQVARMNNIPYFGVXLGMQVAVI  111 (273)
T ss_dssp             TCSEEEECCCCTTT---THHHHHHHHHHHHHHTCCEEEETHHHHHHHH
T ss_pred             hCCEEEecCCCCCc---CchhHHHHHHHHHHCCCcEEEECcCHHHHHH
Confidence            68999999997642   2345778999998899999999999999975

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=96.99  E-value=0.0025  Score=56.56  Aligned_cols=91  Identities=16%  Similarity=0.192  Sum_probs=57.1

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      .+|+||=|-.-   -.......|+..|..+.++..+.                                .++++....+|
T Consensus         8 ~~IlilD~Gs~---~~~~I~r~lre~Gv~~eiv~~~~--------------------------------~~~~i~~~~~d   52 (556)
T 3uow_A            8 DKILVLNFGSQ---YFHLIVKRLNNIKIFSETKDYGV--------------------------------ELKDIKDMNIK   52 (556)
T ss_dssp             CEEEEEESSCT---THHHHHHHHHHTTCCEEEEETTC--------------------------------CGGGTTTSCEE
T ss_pred             CEEEEEECCCc---cHHHHHHHHHHCCCeEEEEECCC--------------------------------CHHHHhhcCCC
Confidence            57777755321   23456778888998777764321                                12222223799


Q ss_pred             EEEEcCCCCcccccCChHHH-HHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAPEYLAMNDSVI-DLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~~~~~~~~~l~-~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||+|||++.......+.+. .+++.+.++++||.+||.|.++|+.+
T Consensus        53 gIIlsGGp~s~~~~~~~~~~~~l~~~a~~~g~PvLGIC~G~QlLa~~   99 (556)
T 3uow_A           53 GVILSGGPYSVTEAGSPHLKKEVFEYFLEKKIPIFGICYGMQEIAVQ   99 (556)
T ss_dssp             EEEECCCSCCTTSTTCCCCCHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             EEEECCCCCcccccCCcchhHHHHHHhhhcCCCEEEECHHHHHHHHH
Confidence            99999997532211112222 33444566799999999999999875

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=96.74  E-value=0.00098  Score=58.79  Aligned_cols=89  Identities=15%  Similarity=0.190  Sum_probs=55.5

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      .++|+|+=+.+-.   .......|+.+|..+.++..+..                            + ..+.+.   .+
T Consensus         7 ~~~IlIlD~g~~~---~~~i~r~lr~~G~~~~i~p~~~~----------------------------~-~~i~~~---~~   51 (525)
T 1gpm_A            7 KHRILILDFGSQY---TQLVARRVRELGVYCELWAWDVT----------------------------E-AQIRDF---NP   51 (525)
T ss_dssp             SSEEEEEECSCTT---HHHHHHHHHHTTCEEEEEESCCC----------------------------H-HHHHHH---CC
T ss_pred             CCEEEEEECCCcc---HHHHHHHHHHCCCEEEEEECCCC----------------------------H-HHHhcc---CC
Confidence            3579888665322   24566889999987777643210                            0 011111   46


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||+|||++..+-...+.+   .++..+.++||.+||.|.++|+.+
T Consensus        52 dgiILsGGp~s~~~~~~~~~---~~~~~~~g~PvLGIC~G~Qlla~~   95 (525)
T 1gpm_A           52 SGIILSGGPESTTEENSPRA---PQYVFEAGVPVFGVCYGMQTMAMQ   95 (525)
T ss_dssp             SEEEECCCSSCTTSTTCCCC---CGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             CEEEECCcCccccccCCcch---HHHHHHCCCCEEEEChHHHHHHHH
Confidence            99999999753221111211   244567899999999999999875

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=96.69  E-value=0.0025  Score=52.15  Aligned_cols=50  Identities=18%  Similarity=0.302  Sum_probs=37.8

Q ss_pred             CCCCccEEEEcCCCC-ccc---ccCChHHHHHHHHHHhCCCeEEEEehHHHHHH
Q 027708           83 DPTKYDGLVIPGGRA-PEY---LAMNDSVIDLVRKFSNSGKTIASICHGQLILA  132 (220)
Q Consensus        83 ~~~~~D~liipGG~~-~~~---~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La  132 (220)
                      ....||.+||.|++. ...   ..--.++.++++...++++++.+||-|+.+++
T Consensus        96 ~~~~~DglIITGap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l  149 (301)
T 2vdj_A           96 ENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGL  149 (301)
T ss_dssp             TTSCEEEEEECCCTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHH
T ss_pred             cccccCEEEECCCCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHH
Confidence            345799999999973 211   11225788888888889999999999999843

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=96.45  E-value=0.0038  Score=54.57  Aligned_cols=48  Identities=13%  Similarity=0.239  Sum_probs=40.3

Q ss_pred             CCCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           84 PTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        84 ~~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ..++|.|++|||++..   ......++++.+.++++|+.+||.|.++|+.+
T Consensus       348 L~~~DgIIlpGG~G~~---~~~g~i~~ir~a~~~~~PiLGIClG~Qll~va  395 (535)
T 3nva_A          348 LGNVNGIIVLPGFGSR---GAEGKIKAIKYAREHNIPFLGICFGFQLSIVE  395 (535)
T ss_dssp             TTSCSEEEECCCCSST---THHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             ccCCCEEEECCCCCCc---cHHHHHHHHHHHHHcCCcEEEECcchhHHHHH
Confidence            3589999999998743   34678899999999999999999999988654

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=96.24  E-value=0.01  Score=45.03  Aligned_cols=45  Identities=18%  Similarity=0.218  Sum_probs=29.6

Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .|.+|+.||.+...  +.....++++ ..++++||.+||.|.++|+.+
T Consensus        48 ~~~iil~gGpg~~~--~~~~~~~l~~-~~~~~~PilGIC~G~Qll~~~   92 (192)
T 1i1q_B           48 NPVLMLSPGPGVPS--EAGCMPELLT-RLRGKLPIIGICLGHQAIVEA   92 (192)
T ss_dssp             SEEEEECCCSSCGG--GSTTHHHHHH-HHBTTBCEEEETHHHHHHHHH
T ss_pred             CCeEEECCCCcCch--hCchHHHHHH-HHhcCCCEEEECcChHHHHHH
Confidence            34477777765322  1222333444 456899999999999999875

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=96.10  E-value=0.0084  Score=52.87  Aligned_cols=46  Identities=20%  Similarity=0.318  Sum_probs=38.9

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      ..+|.||+|||++...   .....++++++.+.++|+.+||.|-++|+.
T Consensus       342 ~~~DGIilsGGpg~~~---~~g~~~~i~~a~~~~~PiLGIClG~Qll~v  387 (545)
T 1s1m_A          342 KGLDAILVPGGFGYRG---VEGMITTARFARENNIPYLGICLGMQVALI  387 (545)
T ss_dssp             TTCSEEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHH
T ss_pred             hcCCEEEECCCCCCcc---chhhHHHHHHHHHCCCcEEEECChHHHHHH
Confidence            4799999999986432   356778999999899999999999999985

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=96.09  E-value=0.0058  Score=53.95  Aligned_cols=47  Identities=17%  Similarity=0.279  Sum_probs=38.8

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ..+|.||+|||++...   ....+++++.+.++++|+.+||-|-++|+.+
T Consensus       354 ~~~DGIILpGGfGd~~---~~g~i~~ir~a~e~~iPiLGICLGmQlL~~a  400 (550)
T 1vco_A          354 RDVSGILVPGGFGVRG---IEGKVRAAQYARERKIPYLGICLGLQIAVIE  400 (550)
T ss_dssp             TTCSCEEECCCCSSTT---HHHHHHHHHHHHHTTCCEEEETHHHHHHHHH
T ss_pred             hcCCEEEECCCCCCcc---hhhhHHHHHHHHHCCCcEEEECcCHHHHHHH
Confidence            4799999999976432   3456788998888999999999999998764

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=95.33  E-value=0.016  Score=50.69  Aligned_cols=46  Identities=22%  Similarity=0.371  Sum_probs=32.0

Q ss_pred             CccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .+|.||+|||++..+-...+.+   .++..+.++||.+||.|.++|+.+
T Consensus        42 ~~dgiIlsGGp~s~~~~~~~~~---~~~~~~~~~PvLGIC~G~Qlla~~   87 (503)
T 2ywb_A           42 RPQALILSGGPRSVFDPDAPRP---DPRLFSSGLPLLGICYGMQLLAQE   87 (503)
T ss_dssp             CCSEEEECCCSSCSSCTTCCCC---CGGGGCSSCCEEEETHHHHHHHHT
T ss_pred             CCCEEEECCCCchhccCCCcch---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            4799999999753221111111   244557899999999999999876

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=95.20  E-value=0.0056  Score=55.72  Aligned_cols=89  Identities=16%  Similarity=0.153  Sum_probs=52.1

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ..+|+||-+.+-. .+  .....|+..|..+.++..+.                                ..+++...++
T Consensus        29 ~~~I~VLDfg~q~-~~--liar~lre~Gv~~~ivp~~~--------------------------------~~e~i~~~~~   73 (697)
T 2vxo_A           29 EGAVVILDAGAQY-GK--VIDRRVRELFVQSEIFPLET--------------------------------PAFAIKEQGF   73 (697)
T ss_dssp             CCCEEEEEEC--C-HH--HHHHHHHHTTCCEEEEETTC--------------------------------CHHHHHHHTC
T ss_pred             CCEEEEEECCCch-HH--HHHHHHHHCCCEEEEEECCC--------------------------------CHHHHhhcCC
Confidence            3578888776522 12  24578888898777764321                                1111111368


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||++||++..+-...+.+   .++..+.++||.+||.|.++|+.+
T Consensus        74 dGIILsGGp~s~~~~~~~~~---~~~i~~~g~PvLGIC~G~QlLa~~  117 (697)
T 2vxo_A           74 RAIIISGGPNSVYAEDAPWF---DPAIFTIGKPVLGICYGMQMMNKV  117 (697)
T ss_dssp             SEEEEEECC-------CCCC---CGGGTTSSCCEEEEEHHHHHHHHH
T ss_pred             CEEEECCCCCcccCccchhH---HHHHHhCCCCEEEECHHHHHHHHH
Confidence            99999999863211111111   133456899999999999999875

>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}

Probab=93.92  E-value=0.026  Score=45.81  Aligned_cols=48  Identities=19%  Similarity=0.416  Sum_probs=40.0

Q ss_pred             CccEEEEcCCCCcc--cccCChHHHHHHHHHHhCC-CeEEEEehHHHHHHh
Q 027708           86 KYDGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSG-KTIASICHGQLILAA  133 (220)
Q Consensus        86 ~~D~liipGG~~~~--~~~~~~~l~~~l~~~~~~g-~~i~aic~G~~~La~  133 (220)
                      +.|+|+|+||....  .......+.+.|++.+++| .++++.|+|+.+++.
T Consensus       110 ~ad~I~v~GGnt~~l~~~l~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~  160 (291)
T 3en0_A          110 QCTGIFMTGGDQLRLCGLLADTPLMDRIRQRVHNGEISLAGTSAGAAVMGH  160 (291)
T ss_dssp             HCSEEEECCSCHHHHHHHHTTCHHHHHHHHHHHTTSSEEEEETHHHHTTSS
T ss_pred             cCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhH
Confidence            68999999996532  2346778999999999999 899999999998753

>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}

Probab=89.61  E-value=1.3  Score=35.15  Aligned_cols=84  Identities=14%  Similarity=0.016  Sum_probs=53.4

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      |+||+|+- ..........+.+.|+..|++|++++...-+                           .  +.++  ..+|
T Consensus         4 m~~vLiV~-g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~---------------------------~--~~~~--L~~y   51 (259)
T 3rht_A            4 MTRVLYCG-DTSLETAAGYLAGLMTSWQWEFDYIPSHVGL---------------------------D--VGEL--LAKQ   51 (259)
T ss_dssp             --CEEEEE-SSCTTTTHHHHHHHHHHTTCCCEEECTTSCB---------------------------C--SSHH--HHTC
T ss_pred             CceEEEEC-CCCchhHHHHHHHHHHhCCceEEEecccccc---------------------------c--ChhH--HhcC
Confidence            47888883 2223446667788999999999988754210                           0  1122  2489


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEeh
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICH  126 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~  126 (220)
                      |+||++.- ....  -++...+.|+++.++|.-++.+..
T Consensus        52 DvIIl~d~-~~~~--l~~~~~~~L~~yV~~GGgLi~~gG   87 (259)
T 3rht_A           52 DLVILSDY-PAER--MTAQAIDQLVTMVKAGCGLVMLGG   87 (259)
T ss_dssp             SEEEEESC-CGGG--BCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEcCC-cccc--CCHHHHHHHHHHHHhCCeEEEecC
Confidence            99999842 2222  356777888888888887777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d1vhqa_	217	c.23.16.2 (A:) Putative sigma cross-reacting prote	2e-32
d1oi4a1	170	c.23.16.2 (A:23-192) Hypothetical protein YhbO {Es	1e-31
d1g2ia_	166	c.23.16.2 (A:) Intracellular protease {Archaeon Py	8e-30
d1qvwa_	236	c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Bake	8e-26
d1n57a_	279	c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia col	6e-23
d1u9ca_	221	c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothe	6e-22
d2fexa1	188	c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {	2e-19
d1sy7a1	184	c.23.16.3 (A:553-736) Catalase, C-terminal domain	3e-18
d1p80a1	156	c.23.16.3 (A:598-753) Catalase, C-terminal domain	8e-18
d2ab0a1	195	c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherich	6e-17
d1p5fa_	186	c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId:	2e-16

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

 Score =  114 bits (287), Expect = 2e-32
 Identities = 34/193 (17%), Positives = 59/193 (30%), Gaps = 20/193 (10%)

Query: 8   KRSVLLLCG----DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQ 63
           K+  ++L G    D  E +EA++   A+   G       P K+  DV      ++   + 
Sbjct: 2   KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMT-ET 60

Query: 64  TYSETRGHNFALNA--TFDEIDPTKYDGLVIPGGRAP-----------EYLAMNDSVIDL 110
                              + D  + D L++PGG                  ++  +  L
Sbjct: 61  RNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKAL 120

Query: 111 VRKFSNSGKTIASICHGQLILAAADVVKGR-KCTAYPPVKPVLIAAGASWIEPETMAACV 169
            +    +GK +  +C    +L        R           VL   GA  +        V
Sbjct: 121 AQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAEVLEEMGAEHVPCPVDDIVV 180

Query: 170 V-DGNIITGATYE 181
             D  I+T   Y 
Sbjct: 181 DEDNKIVTTPAYM 193

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (278), Expect = 1e-31
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 18/187 (9%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           + + +L  D  ED E   P       G  V                       +    + 
Sbjct: 2   KKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEK---------------QAGKTVKGKK 46

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
              +  ++ + DE+ P ++D L++PGG +P+YL  ++  +   R F NSGK + +ICHG 
Sbjct: 47  GEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP 106

Query: 129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIR 188
            +L +ADV++GRK TA  P+   +  AGA + + E     V    ++T  T +  P F R
Sbjct: 107 QLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQE---VVVDKDQLVTSRTPDDLPAFNR 163

Query: 189 LFLKALG 195
             L+ LG
Sbjct: 164 EALRLLG 170

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  106 bits (266), Expect = 8e-30
 Identities = 63/184 (34%), Positives = 98/184 (53%), Gaps = 21/184 (11%)

Query: 11  VLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG 70
           VL L  +  ED E + P+  L   G  V  A   +                  T +   G
Sbjct: 3   VLFLTANEFEDVELIYPYHRLKEEGHEVYIASFER-----------------GTITGKHG 45

Query: 71  HNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLI 130
           ++  ++ TFD+++P ++D LV+PGGRAPE + +N+  + + RK  + GK +ASICHG  I
Sbjct: 46  YSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQI 105

Query: 131 LAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLF 190
           L +A V++GRK T+YP +K  +I AG  W++    A  VVDGN ++         ++R F
Sbjct: 106 LISAGVLRGRKGTSYPGIKDDMINAGVEWVD----AEVVVDGNWVSSRVPADLYAWMREF 161

Query: 191 LKAL 194
           +K L
Sbjct: 162 VKLL 165

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.3 bits (244), Expect = 8e-26
 Identities = 38/230 (16%), Positives = 67/230 (29%), Gaps = 46/230 (20%)

Query: 11  VLLLCGDYMEDY------------EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQS 58
           VLL    Y + +            EA+ PF      G  VD      K G    +     
Sbjct: 5   VLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDF 64

Query: 59  TGHQ-----QTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEY-LAMNDSVIDLVR 112
              Q     +          A   T  E++   Y   +   G    +       + D+  
Sbjct: 65  LNGQDETDFKNKDSDFNKTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIAS 124

Query: 113 KFSNSGKTIASICHGQLILAAA-------DVVKGRKCTAYP------------------- 146
           +   +G  +A++CHG  +            +++G+  T +                    
Sbjct: 125 EIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSITGFTDVGETIMGVDSILKAKNLA 184

Query: 147 PVKPVLIAAGASWIEPETMAAC--VVDGNIITGATYEGHPEFIRLFLKAL 194
            V+ V    GA ++ P        + DG ++TG             + AL
Sbjct: 185 TVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDAL 234

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

 Score = 91.3 bits (226), Expect = 6e-23
 Identities = 30/201 (14%), Positives = 57/201 (28%), Gaps = 29/201 (14%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFAL-----NA 77
           E ++P   L A G   + A            A+         + E     F       + 
Sbjct: 73  ETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADV 132

Query: 78  TFDEIDPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD- 135
                  ++Y  + +PGG      L  +  V   ++    + + + S+CHG     A   
Sbjct: 133 VASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRH 192

Query: 136 ---VVKGRKCTAYPP-------------------VKPVLIAAGASWIEPETMAACVVDGN 173
               + G    A+P                        L   G + I  +       D  
Sbjct: 193 GDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRK 252

Query: 174 IITGATYEGHPEFIRLFLKAL 194
           ++TG +        +L  + +
Sbjct: 253 LLTGDSPFAANALGKLAAQEM 273

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 87.6 bits (216), Expect = 6e-22
 Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 27/197 (13%)

Query: 23  EAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEI 82
           E  VP+      G  V  A      G   P           +++E         A   + 
Sbjct: 27  EFAVPYLVFQEKGYDVKVASIQ---GGEVPLDPRSINEKDPSWAEAEAA-LKHTARLSKD 82

Query: 83  DPTKYDGLVIPGGRAPEY-LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA------AD 135
           D   +D + +PGG    +    N+++  ++++F+  G+ IA++CHG   L          
Sbjct: 83  DAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTP 142

Query: 136 VVKGRKCTAYP---------------PVKPVLIAAGASWIEPETMAA-CVVDGNIITGAT 179
           +VKG+  T++                 ++  L   GA+++         V DGN+ITG  
Sbjct: 143 IVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQN 202

Query: 180 YEGHPEFIRLFLKALGG 196
            +         + AL  
Sbjct: 203 PQSSRSTAEKVVAALEE 219

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 79.7 bits (196), Expect = 2e-19
 Identities = 40/187 (21%), Positives = 61/187 (32%), Gaps = 20/187 (10%)

Query: 11  VLLLCGDYMEDYEAMVPFQALL-AFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
           + +       D+E  +   A     GV +  A P           V    G +       
Sbjct: 4   IAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-------PVTSMGGLK------- 49

Query: 70  GHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQL 129
                 + ++D +DP   D LVIPGG + E       +  LV++F +  + +A IC    
Sbjct: 50  ---VTPDTSYDALDPVDIDALVIPGGLSWEK-GTAADLGGLVKRFRDRDRLVAGICAAAS 105

Query: 130 ILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRL 189
            L    V+     T           A             V DG ++T A       F   
Sbjct: 106 ALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDGGVVTAAGS-APVSFAVE 164

Query: 190 FLKALGG 196
            LK+LG 
Sbjct: 165 ILKSLGL 171

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

 Score = 76.9 bits (188), Expect = 3e-18
 Identities = 22/179 (12%), Positives = 45/179 (25%), Gaps = 20/179 (11%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           R V ++  D  ++      + A+ A                             +  +  
Sbjct: 4   RRVAIIIADGYDNVAYDAAYAAISANQAIPLVI----------------GPRRSKVTAAN 47

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
                  +              +  G +A E L+ N   +  +R+     K I +     
Sbjct: 48  GSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAV 107

Query: 129 LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFI 187
            ++A A  +     ++   V           ++PE       D   I         EF 
Sbjct: 108 DLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPE----SFTDAVKIAKGAAGFLGEFF 162

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

 Score = 75.1 bits (184), Expect = 8e-18
 Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 18/133 (13%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           R V +L  D +   + +   +AL A GV                             +  
Sbjct: 4   RVVAILLNDEVRSADLLAILKALKAKGVHAKLLYS-----------------RMGEVTAD 46

Query: 69  RGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQ 128
            G    + ATF        D +++P G   + +A N      + +     K IA     +
Sbjct: 47  DGTVLPIAATFAGAPSLTVDAVIVPCGNIAD-IADNGDANYYLMEAYKHLKPIALAGDAR 105

Query: 129 LILAAADVVKGRK 141
              A   +    +
Sbjct: 106 KFKATIKIADQGE 118

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

 Score = 73.6 bits (180), Expect = 6e-17
 Identities = 39/191 (20%), Positives = 68/191 (35%), Gaps = 24/191 (12%)

Query: 10  SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETR 69
           S L+      E+ EA+     L+  G+ V  A            +              R
Sbjct: 3   SALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCS--------------R 48

Query: 70  GHNFALNATFDEIDPTKYDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICH-G 127
           G     +A   E+   +YD +V+PGG    E    +  +++ V++F  SG+ +A+IC   
Sbjct: 49  GVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAP 108

Query: 128 QLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGN--IITGATYEGHPE 185
             +L   D+      T +P +K  + A              V D    ++T        +
Sbjct: 109 ATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLD------KRVVWDARVKLLTSQGPGTAID 162

Query: 186 FIRLFLKALGG 196
           F    +  L G
Sbjct: 163 FGLKIIDLLVG 173

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 2e-16
 Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 21/190 (11%)

Query: 9   RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSET 68
           +  L++     E+ E ++P   +   G+ V  A                    +     +
Sbjct: 2   KRALVILAKGAEEMETVIPVDVMRRAGIKVTVA----------------GLAGKDPVQCS 45

Query: 69  RGHNFALNATFDEIDPTK-YDGLVIPGGRAP-EYLAMNDSVIDLVRKFSNSGKTIASICH 126
           R      +A+ ++      YD +V+PGG    + L+ + +V +++++  N    IA+IC 
Sbjct: 46  RDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICA 105

Query: 127 GQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEF 186
           G   L A ++  G K T +P  K  ++          +      DG I+T        EF
Sbjct: 106 GPTALLAHEIGFGSKVTTHPLAKDKMMNG---GHYTYSENRVEKDGLILTSRGPGTSFEF 162

Query: 187 IRLFLKALGG 196
               ++AL G
Sbjct: 163 ALAIVEALNG 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	100.0
d1p5fa_	186	DJ-1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oi4a1	170	Hypothetical protein YhbO {Escherichia coli [TaxId	100.0
d2ab0a1	195	Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]	100.0
d2fexa1	188	Hypothetical protein Atu0886 {Agrobacterium tumefa	100.0
d1sy7a1	184	Catalase, C-terminal domain {Neurospora crassa [Ta	100.0
d1u9ca_	221	GK2698 ortholog {Bacillus stearothermophilus [TaxI	100.0
d1qvwa_	236	Hypothetical protein Ydr533Cp {Baker's yeast (Sacc	99.97
d1n57a_	279	HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}	99.97
d1vhqa_	217	Putative sigma cross-reacting protein 27A (SCRP-27	99.94
d1p80a1	156	Catalase, C-terminal domain {Escherichia coli, HPI	99.91
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.8
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	98.74
d1t3ta2	262	FGAM synthase PurL, amidotransferase domain {Salmo	98.62
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	98.45
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	98.0
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	97.86
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	97.84
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	97.81
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	97.47
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	97.47
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	97.27
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	97.18
d2ghra1	281	Homoserine O-succinyltransferase HTS (MetA) {Bacil	97.09
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	97.07
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	97.0
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	95.88
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	94.87
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	92.87
d1fyea_	229	Aspartyl dipeptidase PepE {Salmonella typhimurium	88.09
d1iowa1	96	D-Ala-D-Ala ligase, N-domain {Escherichia coli, ge	87.93

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=4.1e-42  Score=260.45  Aligned_cols=165  Identities=38%  Similarity=0.680  Sum_probs=156.1

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|+++|||++.|+..|+++|+++|++|+++|++++                 +|+++.|+.+.++.+++++++.+||
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~-----------------~V~~~~g~~i~~d~~~~~~~~~~~d   63 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERG-----------------TITGKHGYSVKVDLTFDKVNPEEFD   63 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSE-----------------EEECTTSCEEEECEEGGGCCGGGCS
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCc-----------------eEeecCCcEEeccccHHHcCccccc
Confidence            38999999999999999999999999999999999875                 8999999999999999999888999


Q ss_pred             EEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCceE
Q 027708           89 GLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMAAC  168 (220)
Q Consensus        89 ~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~~~  168 (220)
                      +|+||||.++.....++.+++||+++++++++|+++|+|+++|+++|||+||++|+||...+.+++.+.++++.+    +
T Consensus        64 ~viipGg~~~~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~g~~~~~~~----v  139 (166)
T d1g2ia_          64 ALVLPGGRAPERVRLNEKAVSIARKMFSEGKPVASICHGPQILISAGVLRGRKGTSYPGIKDDMINAGVEWVDAE----V  139 (166)
T ss_dssp             EEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEEEETTTTHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSS----C
T ss_pred             EEEEecccchhhhccChHHHHHHHHHHhcCCeeeeccccchhhhhcCcccCCccccCccHHHHHHHcCCeEcCCC----E
Confidence            999999987766667999999999999999999999999999999999999999999999999999889998775    8


Q ss_pred             EEcCCEEeCCCCCCHHHHHHHHHHHH
Q 027708          169 VVDGNIITGATYEGHPEFIRLFLKAL  194 (220)
Q Consensus       169 v~dg~iiTs~g~~s~~~~~~~li~~l  194 (220)
                      |+|||+|||+|+.++.+|++++++.|
T Consensus       140 V~Dg~iiTs~g~~~~~~f~~~~i~~L  165 (166)
T d1g2ia_         140 VVDGNWVSSRVPADLYAWMREFVKLL  165 (166)
T ss_dssp             EEETTEEEECSGGGHHHHHHHHHHHH
T ss_pred             EEeCCEEECCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999987

>d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: DJ-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-42  Score=262.93  Aligned_cols=179  Identities=23%  Similarity=0.343  Sum_probs=157.2

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCC-CCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEID-PTK   86 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~-~~~   86 (220)
                      +|||+|+++|||++.|+..|+++|+++|++|+++|++++.                ++++++|+.+.+|.+++++. ..+
T Consensus         1 sKkvlvll~~Gfe~~E~~~p~~~l~~ag~~v~~~s~~~~~----------------~v~~~~g~~i~~d~~l~d~~~~~~   64 (186)
T d1p5fa_           1 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKD----------------PVQCSRDVVICPDASLEDAKKEGP   64 (186)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSS----------------CEECTTSCEECCSEEHHHHHHTCC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEEecCCc----------------ceecCCCccccCccchhccCCccc
Confidence            4899999999999999999999999999999999987542                78999999999999988764 248


Q ss_pred             ccEEEEcCCCC-cccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCC
Q 027708           87 YDGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM  165 (220)
Q Consensus        87 ~D~liipGG~~-~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~  165 (220)
                      ||+|+||||.. +..+.+++.+.+||+++++++++|+++|+|+++|+++|||+||++|+||...+.+++.|..+..+.  
T Consensus        65 ~D~liipGG~~~~~~l~~~~~l~~~lr~~~~~~k~i~aiC~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~--  142 (186)
T d1p5fa_          65 YDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSEN--  142 (186)
T ss_dssp             CSEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCC--
T ss_pred             ccEEEEecCccccccccchHHHHHHHHHhhccccceeecccCcchhhhcCCccccccccchhHHHHHHhcCceEEecc--
Confidence            99999999974 455678999999999999999999999999999999999999999999999999988766555444  


Q ss_pred             ceEEEcCCEEeCCCCCCHHHHHHHHHHHHcccc-ccc-ccce
Q 027708          166 AACVVDGNIITGATYEGHPEFIRLFLKALGGTI-TGS-DKRI  205 (220)
Q Consensus       166 ~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~~-a~~-~~~~  205 (220)
                       .+++|||+|||+|++++.+|++++|+.+.|+. +.+ ++.+
T Consensus       143 -~vv~Dg~iiT~~g~~~~~d~al~li~~l~g~~~a~~va~~l  183 (186)
T d1p5fa_         143 -RVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPL  183 (186)
T ss_dssp             -SEEEETTEEEECSGGGHHHHHHHHHHHHHCHHHHHHHHGGG
T ss_pred             -cEEecCCEEECCCccHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence             38999999999999999999999999887774 444 4433

>d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein YhbO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.9e-40  Score=248.94  Aligned_cols=169  Identities=32%  Similarity=0.559  Sum_probs=156.1

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccC-cccccCcCcCCCCCCC
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRG-HNFALNATFDEIDPTK   86 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~i~~~~~l~~~~~~~   86 (220)
                      +|||+|+++|||++.|+..|+++|+++|++|++++++.+.                ++.++.| .++.+|.+++++.+.+
T Consensus         1 ~KkIail~~dgf~~~E~~~~~~~l~~ag~~v~~vs~~~~~----------------~v~~~~~~~~v~~d~~l~~~~~~~   64 (170)
T d1oi4a1           1 SKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGK----------------TVKGKKGEASVTIDKSIDEVTPAE   64 (170)
T ss_dssp             CCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTC----------------EEECTTSSCEEECCEEGGGCCGGG
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEeccCCCCc----------------eeeeeccCeEEecCCcHHHCChhh
Confidence            4799999999999999999999999999999999987542                5666654 8999999999998889


Q ss_pred             ccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCc
Q 027708           87 YDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  166 (220)
Q Consensus        87 ~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~  166 (220)
                      ||+||||||+++..+..++.+++||+++++++|+|+++|+|+.+|+++|+|+||++|+||.....+++.|++|++++.  
T Consensus        65 yDalivpGG~~~~~l~~~~~~~~~i~~~~~~~k~i~aiC~g~~~La~~glL~g~~~T~~~~~~~~l~~~g~~~~~~~~--  142 (170)
T d1oi4a1          65 FDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEV--  142 (170)
T ss_dssp             CSEEEECCBTHHHHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSC--
T ss_pred             ceEEEEccchhhhhhccChHHHHHHHHHhhcCCeeeecccchHHHhhhhhccccccccCchHHHHHHhCCCEEecCCE--
Confidence            999999999887777889999999999999999999999999999999999999999999999999999999998874  


Q ss_pred             eEEEcCCEEeCCCCCCHHHHHHHHHHHHc
Q 027708          167 ACVVDGNIITGATYEGHPEFIRLFLKALG  195 (220)
Q Consensus       167 ~~v~dg~iiTs~g~~s~~~~~~~li~~l~  195 (220)
                       +|+||++|||+|+.++.+|++++++.|+
T Consensus       143 -VVdd~~liTs~g~~~~~~fa~~~i~~Lg  170 (170)
T d1oi4a1         143 -VVDKDQLVTSRTPDDLPAFNREALRLLG  170 (170)
T ss_dssp             -EEETTTEEEESSGGGHHHHHHHHHHHHC
T ss_pred             -EEECCEEEECCChhhHHHHHHHHHHHhC
Confidence             7788999999999999999999999886

>d2ab0a1 c.23.16.2 (A:2-196) Protein ThiJ (YajL) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Protein ThiJ (YajL)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.2e-39  Score=248.51  Aligned_cols=186  Identities=22%  Similarity=0.371  Sum_probs=158.6

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +++++|+++|||++.|+..|+++|+++|++|++++......              .+++++.|+.+.+|..+++++..+|
T Consensus         1 ~~~ali~l~~Gfe~~E~~~p~d~L~rag~~v~~~s~~~~~~--------------~~v~~~~G~~v~~d~~~~d~~~~d~   66 (195)
T d2ab0a1           1 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGN--------------LAITCSRGVKLLADAPLVEVADGEY   66 (195)
T ss_dssp             CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTC--------------CEEECTTSCEEECSEEHHHHTTSCC
T ss_pred             CceEEEEecCCccHHHHHHHHHHHHHCCCEEEEEEEcCCCC--------------ceEEeCCCcEeecCcChHHcCcccc
Confidence            36899999999999999999999999999999998754311              1788999999999999999888899


Q ss_pred             cEEEEcCCCC-cccccCChHHHHHHHHHHhCCCeEEEEehHH-HHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCC
Q 027708           88 DGLVIPGGRA-PEYLAMNDSVIDLVRKFSNSGKTIASICHGQ-LILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETM  165 (220)
Q Consensus        88 D~liipGG~~-~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~-~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~  165 (220)
                      |+|+||||.+ +..+.+++.+.+|||++++++|+|+++|+|+ ++|+++|||+||++|+||..++.+.  +..|++.+  
T Consensus        67 D~liiPGG~~~~~~l~~~~~l~~~lr~~~~~gk~i~aiC~g~a~lLa~aGlL~g~~~T~~~~~~~~~~--~~~~~~~~--  142 (195)
T d2ab0a1          67 DVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIP--AEQWLDKR--  142 (195)
T ss_dssp             SEEEECCCHHHHHHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSC--TTTBCCCS--
T ss_pred             eEEEEccccCccccccccHHHHHHHHHHhhccceeeeeeccchhhhhhcCccCCCEEeccHHHhhhcc--cceEeecc--
Confidence            9999999974 4556789999999999999999999999994 8999999999999999998765442  46676665  


Q ss_pred             ceEEEcCC--EEeCCCCCCHHHHHHHHHHHHcccc-ccc-ccceeeecCCch
Q 027708          166 AACVVDGN--IITGATYEGHPEFIRLFLKALGGTI-TGS-DKRILFLCGVSF  213 (220)
Q Consensus       166 ~~~v~dg~--iiTs~g~~s~~~~~~~li~~l~~~~-a~~-~~~~~~~~~~~~  213 (220)
                        +++|||  +|||+|++++++|++++|+++.|+. +.+ ++.+++......
T Consensus       143 --vv~Dgn~~liTa~g~~a~~d~al~lie~l~g~e~A~~va~~l~~~~~~~~  192 (195)
T d2ab0a1         143 --VVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYN  192 (195)
T ss_dssp             --EEEETTTTEEEECSGGGHHHHHHHHHHHHTCHHHHHHHHTTTTCCTTSCC
T ss_pred             --eEEECCCeEEECCCHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcchhh
Confidence              888986  7999999999999999999998874 455 777777664443

>d2fexa1 c.23.16.2 (A:1-188) Hypothetical protein Atu0886 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Atu0886
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=1.5e-37  Score=239.45  Aligned_cols=165  Identities=25%  Similarity=0.389  Sum_probs=144.6

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHh-CCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLA-FGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~-ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +||+|+++|||++.|+..+.+.|+. +|+++.++|++++                 +|++++|+.+.||.+++++++.+|
T Consensus         2 ~kv~vll~~gf~~~E~~~~~~~l~~~~g~~v~~vs~~~~-----------------~V~s~~G~~v~~d~~l~~~~~~~~   64 (188)
T d2fexa1           2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGM-----------------PVTSMGGLKVTPDTSYDALDPVDI   64 (188)
T ss_dssp             CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSS-----------------CEECTTCCEEECSEEGGGCCTTTC
T ss_pred             CEEEEEeCCChhHHHHHHHHHHHhhcCCcEEEEEeCCCC-----------------cEEcCCCCEEeecCchHHCChhhc
Confidence            6999999999999999999999986 7999999999875                 899999999999999999988899


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHH-HHHC-C-CeEecCCC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPV-LIAA-G-ASWIEPET  164 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~-l~~~-g-~~~~~~~~  164 (220)
                      |+|+||||.+... ..++.+++|||++++++++|+++|+|+++|+++|||+|+++|+||..... +..+ + ..+.+++ 
T Consensus        65 D~liipGG~~~~~-~~~~~l~~~lr~~~~~~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~~~~~~~~~~~~~-  142 (188)
T d2fexa1          65 DALVIPGGLSWEK-GTAADLGGLVKRFRDRDRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQP-  142 (188)
T ss_dssp             SEEEECCBSHHHH-TCCCCCHHHHHHHHHTTCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCS-
T ss_pred             cEEEecCCccccc-cccHHHHHHHHHHHHhCCEEEEecchhHHHHHcCccCCcEEeccchHhhhhhhhcCCCceEEeCC-
Confidence            9999999987554 46778999999999999999999999999999999999999999754333 3343 3 3344444 


Q ss_pred             CceEEEcCCEEeCCCCCCHHHHHHHHHHHHc
Q 027708          165 MAACVVDGNIITGATYEGHPEFIRLFLKALG  195 (220)
Q Consensus       165 ~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~  195 (220)
                        .+|+|||+|||+| .+++|++++++++|+
T Consensus       143 --~vV~DgnliTs~G-~aa~d~al~ii~~L~  170 (188)
T d2fexa1         143 --RAVSDGGVVTAAG-SAPVSFAVEILKSLG  170 (188)
T ss_dssp             --SCEEETTEEEECT-TCHHHHHHHHHHHTT
T ss_pred             --EEEECCCEEECCC-chHHHHHHHHHHHhc
Confidence              4899999999998 589999999999985

>d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Neurospora crassa [TaxId: 5141]

Probab=100.00  E-value=3.9e-35  Score=225.16  Aligned_cols=164  Identities=18%  Similarity=0.188  Sum_probs=146.3

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +|||+||++|||+..|+..|++.|+.+|+++.+++++++                 +++++.|..+.++.++++.++.+|
T Consensus         3 ~rkI~ilv~dG~~~~e~~~~~~~l~~ag~~v~ivs~~~~-----------------~v~~~~g~~v~~d~~~~~~~~~~~   65 (184)
T d1sy7a1           3 SRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRS-----------------KVTAANGSTVQPHHHLEGFRSTMV   65 (184)
T ss_dssp             TCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSS-----------------CEEBTTSCEECCSEETTTCCGGGS
T ss_pred             ccEEEEEecCCCcHHHHHHHHHHHHHCCCEEEEEEecCC-----------------cccccccccccccccccccccccc
Confidence            589999999999999999999999999999999999876                 899999999999999999888899


Q ss_pred             cEEEEcCCC-CcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEecCCCCHHHHHHCCCeEecCCCCc
Q 027708           88 DGLVIPGGR-APEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTAYPPVKPVLIAAGASWIEPETMA  166 (220)
Q Consensus        88 D~liipGG~-~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~~~~~~~~l~~~g~~~~~~~~~~  166 (220)
                      |+++||||. +...+..++.+.+||+++++++|+|+++|+|+++|+++|+|+||++|+||...+.+...+..+++..   
T Consensus        66 dalivpgg~~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~G~~~La~aGlL~g~~~Tt~~~~~~~~~~~~~~~~~~~---  142 (184)
T d1sy7a1          66 DAIFIPGGAKAAETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIALPQVTVSSEAEVHESYGVVTLKKVKPE---  142 (184)
T ss_dssp             SEEEECCCHHHHHHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHCCTTSCCCCSSSCEEETTEEEESSCCTT---
T ss_pred             eEEEEeeccccccccccccchhHHHHHHHhcCCceEEechHHHHHHHcCCCCCceeccCcchhhhhccccceeccCc---
Confidence            999999996 3445678999999999999999999999999999999999999999999998866543334444443   


Q ss_pred             eEEEcCCEEeCCCCCCHHHHHHHHHH
Q 027708          167 ACVVDGNIITGATYEGHPEFIRLFLK  192 (220)
Q Consensus       167 ~~v~dg~iiTs~g~~s~~~~~~~li~  192 (220)
                       ++.||+++|++++....+|+..|.+
T Consensus       143 -~v~dg~~it~~~~~~~~~f~~~i~~  167 (184)
T d1sy7a1         143 -SFTDAVKIAKGAAGFLGEFFYAIAQ  167 (184)
T ss_dssp             -TTTSCCCCSTTCSSHHHHHHHHHHT
T ss_pred             -eEeECCEEecCCHhHHHHHHHHHHH
Confidence             7899999999999888899888875

>d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: GK2698 ortholog
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=5.2e-33  Score=218.89  Aligned_cols=186  Identities=22%  Similarity=0.332  Sum_probs=150.7

Q ss_pred             CCeEEEEecC----------CCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCc
Q 027708            8 KRSVLLLCGD----------YMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNA   77 (220)
Q Consensus         8 ~~kI~il~~~----------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~   77 (220)
                      +|||+|++.+          |+...|+..|+++|+++|++|+++|+++++..   ....+..... .........+..+.
T Consensus         2 ~KkvLiv~s~~~~~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg~~~---~d~~~~~~~~-~~~~~~~~~l~~~~   77 (221)
T d1u9ca_           2 SKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVP---LDPRSINEKD-PSWAEAEAALKHTA   77 (221)
T ss_dssp             CCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCC---BCGGGSSSCC-GGGHHHHHHTTSBE
T ss_pred             CceEEEEecCchhccCCCcccccHHHHHHHHHHHHHCCCEEEEEecCCCcce---eccCcccccc-chhHHHHHHhhCCC
Confidence            4799999975          78888999999999999999999999886421   1111111111 22233344567777


Q ss_pred             CcCCCCCCCccEEEEcCCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCc------ccCCceEecCCC---
Q 027708           78 TFDEIDPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAAD------VVKGRKCTAYPP---  147 (220)
Q Consensus        78 ~l~~~~~~~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~ag------lL~g~~~T~~~~---  147 (220)
                      .+++++..+||+||||||+++. .+..++.+.++++++++++|+|++||+|+.+|+.++      |++||++|+||.   
T Consensus        78 ~l~~v~~~dYd~v~iPGG~g~~~~l~~~~~l~~li~~~~~~~k~iaAIChgp~~l~~a~~~~g~~ll~Gk~~T~~p~~~e  157 (221)
T d1u9ca_          78 RLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTVTSFTDEEE  157 (221)
T ss_dssp             ECCGGGGSSCSEEEECCCTTHHHHSTTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTSCBTTTTCEECCSCHHHH
T ss_pred             ChhHCCHhHCCEEEeCCCCchhhcchhhHHHHHHHHHHHhccCcceeecccceeeeccccCCCCceeCCceeeccCCHHH
Confidence            8888888899999999999864 488999999999999999999999999999999854      899999999975   


Q ss_pred             ------------CHHHHHHCCCeEecCCC-CceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc
Q 027708          148 ------------VKPVLIAAGASWIEPET-MAACVVDGNIITGATYEGHPEFIRLFLKALGGT  197 (220)
Q Consensus       148 ------------~~~~l~~~g~~~~~~~~-~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~  197 (220)
                                  .++.+++.|++|.+... ...+|+|||+||++|+.++.+|++.+|+.|..+
T Consensus       158 ~~~~~~~~~p~~~~~~l~~~Ga~y~~~~~~~~~Vv~Dg~lITg~~p~sa~~fa~~~v~~L~~k  220 (221)
T d1u9ca_         158 REVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEER  220 (221)
T ss_dssp             HHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETTEEEECSGGGHHHHHHHHHHHHHTT
T ss_pred             hhcccccchhhhHHHHHHHCCCEEeecCCCCCCEEEECCEEECCChhhHHHHHHHHHHHHhcC
Confidence                        34557778999987543 345899999999999999999999999998654

>d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Hypothetical protein Ydr533Cp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.6e-31  Score=211.89  Aligned_cols=188  Identities=21%  Similarity=0.303  Sum_probs=147.5

Q ss_pred             CCeEEEEecC------------CCCchhhHHHHHHHHhCCCeEEEEcCCCCCC-CCCCcccccCCCccc----ccccccC
Q 027708            8 KRSVLLLCGD------------YMEDYEAMVPFQALLAFGVSVDAACPGKKSG-DVCPTAVHQSTGHQQ----TYSETRG   70 (220)
Q Consensus         8 ~~kI~il~~~------------g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~-~~~~~~~~~~~~~~~----~v~~~~g   70 (220)
                      +|||+|++.+            |+...|+..|+++|+++|++|+++|+++++. ++.............    ......+
T Consensus         2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~   81 (236)
T d1qvwa_           2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN   81 (236)
T ss_dssp             CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHH
T ss_pred             CceEEEEEcCCccccCCCCCcCcccHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcccccccccccHHHHHHhhhhHHHH
Confidence            6899999965            7777899999999999999999999987642 211000000110000    0011123


Q ss_pred             cccccCcCcCCCCCCCccEEEEcCCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC-------cccCCceE
Q 027708           71 HNFALNATFDEIDPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA-------DVVKGRKC  142 (220)
Q Consensus        71 ~~i~~~~~l~~~~~~~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a-------glL~g~~~  142 (220)
                      ..+..+..+++++..+||+|++|||+++. ++.+++.+.+++++++++||+|++||+|+.+|+.+       +|++||++
T Consensus        82 ~~l~~~~~~~~v~~~~ydav~ipGG~g~~~dl~~~~~l~~li~~~~~~gk~vaAIChGp~~L~~~~~~~~g~~ll~Gk~v  161 (236)
T d1qvwa_          82 KTLAKIKTPKEVNADDYQIFMASAGHGTLFDYPKAKDLQDIASEIYANGGVVAAVCHGPAMFDGLTDKKTGRPLIEGKSI  161 (236)
T ss_dssp             HHHHTCBCGGGCCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTCBCTTTCSBTTTTCEE
T ss_pred             HHHhcccChhhCCHhHCCEEEEeCCccchhcchhhhHHHHHHHHHHhcCCeEEEehhhHHHHHHHhhcccccccccCcee
Confidence            35677788899988999999999999874 48899999999999999999999999999999876       69999999


Q ss_pred             ecCCC-------------------CHHHHHHCCCeEecCCC--CceEEEcCCEEeCCCCCCHHHHHHHHHHHHc
Q 027708          143 TAYPP-------------------VKPVLIAAGASWIEPET--MAACVVDGNIITGATYEGHPEFIRLFLKALG  195 (220)
Q Consensus       143 T~~~~-------------------~~~~l~~~g~~~~~~~~--~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~  195 (220)
                      |+++.                   .++.+++.|++|++...  ...+|+|||+||++++.|+..+++++|+.|.
T Consensus       162 T~f~~~ee~~~~~~~~~~~~~~~~le~~l~~~Ga~~~~~~~~~~~~VVvDg~lITGqnP~Sa~~~a~~~v~~L~  235 (236)
T d1qvwa_         162 TGFTDVGETIMGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGRLVTGVNPASAHSTAVRSIDALK  235 (236)
T ss_dssp             CCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETTEEEECSGGGHHHHHHHHHHGGG
T ss_pred             ccCCcHHHhhccccccccCCCcccHHHHHHHcCCEEeccCCCCCCCEEEeCCEEeCCChhhHHHHHHHHHHHhc
Confidence            99964                   34567778999986442  3458999999999999999999999999874

>d1n57a_ c.23.16.2 (A:) HSP31 (HchA; YedU) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: HSP31 (HchA; YedU)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.1e-30  Score=208.68  Aligned_cols=190  Identities=17%  Similarity=0.230  Sum_probs=143.9

Q ss_pred             CCeEEEEec--------------CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCccc
Q 027708            8 KRSVLLLCG--------------DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNF   73 (220)
Q Consensus         8 ~~kI~il~~--------------~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i   73 (220)
                      ++||+|++.              .|+...|+..|+.+|+.+|++|+++|+++++.....++....+.............+
T Consensus        44 ~~kIL~V~s~~~~~~~~~g~~~~TG~~~~E~~~P~~~l~~AG~eVdiASp~G~~~~~D~~s~~~~d~~~~~~~~~~~~~~  123 (279)
T d1n57a_          44 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLF  123 (279)
T ss_dssp             SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHH
T ss_pred             CceEEEEEcCccccccCCCccccCccCHHHHHHHHHHHHHCCCEEEEECCCCCCCCcCccccccccHHHHHHHHhHHHHH
Confidence            579999996              388899999999999999999999999987543223333211111001111111112


Q ss_pred             ccCcCc-----CCCCCCCccEEEEcCCCCcc-cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC----cccCCceEe
Q 027708           74 ALNATF-----DEIDPTKYDGLVIPGGRAPE-YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA----DVVKGRKCT  143 (220)
Q Consensus        74 ~~~~~l-----~~~~~~~~D~liipGG~~~~-~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a----glL~g~~~T  143 (220)
                      .....+     +..+..+||+||+|||+++. ++..++.+.++|++++++||+|++||+|+..|..+    ++++||++|
T Consensus       124 ~~~~~L~dv~~~~~~~~dYdav~iPGGhG~~~dL~~~~~l~~ll~~~~~~gk~vaaICHGPa~Ll~a~~g~~l~~Gk~vT  203 (279)
T d1n57a_         124 RNPKKLADVVASLNADSEYAAIFVPGGHGALIGLPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSIC  203 (279)
T ss_dssp             HSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGTTSCCTTTTCEEC
T ss_pred             hCchhhhhhhhcccccccccEEEecCCccchhhhhHHHHHHHHHHHHHHcCCcceeccccchhhhhcccCCcccCCeEEe
Confidence            222222     22234589999999999864 58899999999999999999999999999998776    699999999


Q ss_pred             cCCC-------------------CHHHHHHCCCeEecCCCCceEEEcCCEEeCCCCCCHHHHHHHHHHHHccc
Q 027708          144 AYPP-------------------VKPVLIAAGASWIEPETMAACVVDGNIITGATYEGHPEFIRLFLKALGGT  197 (220)
Q Consensus       144 ~~~~-------------------~~~~l~~~g~~~~~~~~~~~~v~dg~iiTs~g~~s~~~~~~~li~~l~~~  197 (220)
                      +++.                   .++.+++.|+++++.+....+++|||+||++++.++..++..+++.|-..
T Consensus       204 ~f~~~eE~~~~~~~~~p~~~~~~le~~L~~~Ga~~~~~~~~~~Vv~D~~LITGqnP~Sa~~~a~~~v~~Ll~a  276 (279)
T d1n57a_         204 AFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQEMLAA  276 (279)
T ss_dssp             CCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETTEEEESSGGGHHHHHHHHHHHHHHH
T ss_pred             ecCCHHHhccchhccCcccccccHHHHHHHcCCEEECCCCCCCEEEeCCEEeCCCcccHHHHHHHHHHHHHHH
Confidence            9875                   34668888999987764556999999999999999999999999877543

>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Putative sigma cross-reacting protein 27A (SCRP-27A, EllB)
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=4.5e-27  Score=183.61  Aligned_cols=170  Identities=19%  Similarity=0.208  Sum_probs=128.3

Q ss_pred             CeEEEEe-----cCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCC-CcccccCCCcccccccccCcccccCcCcCCC
Q 027708            9 RSVLLLC-----GDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVC-PTAVHQSTGHQQTYSETRGHNFALNATFDEI   82 (220)
Q Consensus         9 ~kI~il~-----~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~-~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~   82 (220)
                      |||+|++     +||+++.|+..|++.|+++|++|++++++.+..... ...-......++....+.++.+..+.+++++
T Consensus         2 kKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~~sp~~~~~~~~~h~~~~~~~~~r~~~~~~~~i~~~~~~~l~~v   81 (217)
T d1vhqa_           2 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQA   81 (217)
T ss_dssp             CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGGC
T ss_pred             CEEEEEecCCCCCCchhHHHHHHHHHHHHHCCCEEEEEecCCCccceeccCCCcccccccceeeeeeeeeccccCChHHC
Confidence            6999997     489999999999999999999999999987532110 0000001111112233345556666788999


Q ss_pred             CCCCccEEEEcCCCCc-ccc----------cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCceEec-CCCCHH
Q 027708           83 DPTKYDGLVIPGGRAP-EYL----------AMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRKCTA-YPPVKP  150 (220)
Q Consensus        83 ~~~~~D~liipGG~~~-~~~----------~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~~T~-~~~~~~  150 (220)
                      ++.+||+||||||++. .++          +.++.+++++++++++||+|++||+|+.+|++++.+++++.++ |+...+
T Consensus        82 ~~~~yDaliiPGG~g~~~~l~~~~~~~~~~~~~~~v~~li~~~~~~gk~iaaIC~gp~~l~~~~~~~~~~~~~~~~~~~~  161 (217)
T d1vhqa_          82 DAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTAE  161 (217)
T ss_dssp             CGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSCCEECCCSCHHHHH
T ss_pred             CHhHCCEEEecCCcccHHHHhhhhccccccccCHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhccCCCeeeccChhhHH
Confidence            8899999999999874 223          3468999999999999999999999999999999888876555 556678


Q ss_pred             HHHHCCCeEecCCCCceEEE-cCCEEeCC
Q 027708          151 VLIAAGASWIEPETMAACVV-DGNIITGA  178 (220)
Q Consensus       151 ~l~~~g~~~~~~~~~~~~v~-dg~iiTs~  178 (220)
                      .+++.|++|++.+.+..+|+ |||+||+.
T Consensus       162 ~l~~~Ga~~v~~~~~~~vVD~dg~ivTsp  190 (217)
T d1vhqa_         162 VLEEMGAEHVPCPVDDIVVDEDNKIVTTP  190 (217)
T ss_dssp             HHHHTTCEECCCCTTCCEEETTTTEEEEC
T ss_pred             HHHHcCCcEEeccCCeEEEecCCCEEccc
Confidence            88889999998765444443 59999974

>d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Catalase, C-terminal domain
domain: Catalase, C-terminal domain
species: Escherichia coli, HPII [TaxId: 562]

Probab=99.91  E-value=3.8e-25  Score=164.76  Aligned_cols=116  Identities=19%  Similarity=0.199  Sum_probs=108.1

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +|||+||++|||+..|+..|++.|+++|+++.+++++.+                 ++.++.|..+.++.++++.++.+|
T Consensus         3 grkVaiLv~dg~~~~e~~~~~~~l~~ag~~v~~v~~~~~-----------------~v~~~~G~~i~~d~t~~~~~~~~y   65 (156)
T d1p80a1           3 GRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMG-----------------EVTADDGTVLPIAATFAGAPSLTV   65 (156)
T ss_dssp             TCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSS-----------------EEECTTSCEEECCEETTTSCGGGC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecccc-----------------cccccceeEEeeeeeeccCCcccC
Confidence            589999999999999999999999999999999998875                 888999999999999999988899


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhCcccCCce
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAADVVKGRK  141 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~aglL~g~~  141 (220)
                      |+|+||||... .+..++.+++||+++++++|+|+++|+|+.+|+.+|+++++.
T Consensus        66 DaliiPGG~~~-~l~~~~~~~~~i~e~~~~~K~I~aic~g~~~La~agl~~~~~  118 (156)
T d1p80a1          66 DAVIVPCGNIA-DIADNGDANYYLMEAYKHLKPIALAGDARKFKATIKIADQGE  118 (156)
T ss_dssp             SEEEECCSCTH-HHHTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGTTTCCSSCC
T ss_pred             CEEEeeCCchH-HHhcchHHHHHHHHHHHcCCeEEEECchHHHHHHcCCCcCCC
Confidence            99999999654 467899999999999999999999999999999999998754

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.80  E-value=1.8e-09  Score=82.09  Aligned_cols=86  Identities=22%  Similarity=0.381  Sum_probs=64.4

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ++||+||.++| +   +......|++.|+++.++...                                   +++  .++
T Consensus         6 ~mkIgii~~~G-n---~~s~~~al~~~G~~~~~v~~~-----------------------------------~~l--~~~   44 (202)
T d1q7ra_           6 NMKIGVLGLQG-A---VREHVRAIEACGAEAVIVKKS-----------------------------------EQL--EGL   44 (202)
T ss_dssp             CCEEEEESCGG-G---CHHHHHHHHHTTCEEEEECSG-----------------------------------GGG--TTC
T ss_pred             CCEEEEEECCC-C---HHHHHHHHHHCCCcEEEECCH-----------------------------------HHH--hcC
Confidence            36899999987 2   455567999999988776320                                   122  379


Q ss_pred             cEEEEcCCCCcc--cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPE--YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~--~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||+|||....  .......+.++|+++.++++|+.+||.|.++|++.
T Consensus        45 D~lIlPGG~~~~~~~~l~~~~l~~~I~~~~~~gkPiLGIClG~Qll~~~   93 (202)
T d1q7ra_          45 DGLVLPGGESTTMRRLIDRYGLMEPLKQFAAAGKPMFGTCAGLILLAKR   93 (202)
T ss_dssp             SEEEECCCCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETTHHHHHEEE
T ss_pred             CEEEECCCCcHHHHHHhhhhHHHHHHhhhccccceeeeeehhhHHhhhh
Confidence            999999986322  12234567899999999999999999999999863

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.74  E-value=3.8e-09  Score=79.83  Aligned_cols=85  Identities=24%  Similarity=0.369  Sum_probs=63.5

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|+-++|-.    ......|+++|+++.++...                                   +++  .++|
T Consensus         2 ~~igv~~~~G~~----~~~~~al~~~G~~~~~i~~~-----------------------------------~~l--~~~D   40 (195)
T d2nv0a1           2 LTIGVLGLQGAV----REHIHAIEACGAAGLVVKRP-----------------------------------EQL--NEVD   40 (195)
T ss_dssp             CEEEEECSSSCC----HHHHHHHHHTTCEEEEECSG-----------------------------------GGG--GGCS
T ss_pred             cEEEEEecCChH----HHHHHHHHHCCCcEEEECCH-----------------------------------HHH--hhCC
Confidence            699999998732    33467899999988776421                                   112  3689


Q ss_pred             EEEEcCCCCc--ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRAP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~~--~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||+|||...  ........+.++|+++.++++|+.+||.|.++|+++
T Consensus        41 ~lIlPGG~~~~~~~~~~~~~~~~~I~~~~~~g~pilGIC~G~Qll~~~   88 (195)
T d2nv0a1          41 GLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKE   88 (195)
T ss_dssp             EEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCCEEEETHHHHHHSBC
T ss_pred             EEEECCCCccHHHHHhhhchhcchhhhhhhhcceeeeccccHHHHHhh
Confidence            9999998532  122234456788999999999999999999999874

>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL, amidotransferase domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: FGAM synthase PurL, amidotransferase domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.62  E-value=9.5e-08  Score=74.95  Aligned_cols=98  Identities=18%  Similarity=0.253  Sum_probs=67.7

Q ss_pred             CCeEEEEecCCCC-chhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCC
Q 027708            8 KRSVLLLCGDYME-DYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTK   86 (220)
Q Consensus         8 ~~kI~il~~~g~~-~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~   86 (220)
                      ++||+||.++|.+ +.|..   .+|+.+|+++..+..+.                   +       +.     ......+
T Consensus         6 kpkvaVl~~pGtNcd~e~~---~Af~~aG~~~~~v~~~d-------------------l-------~~-----~~~~L~~   51 (262)
T d1t3ta2           6 RPKVAVLREQGVNSHVEMA---AAFHRAGFDAIDVHMSD-------------------L-------LG-----GRIGLGN   51 (262)
T ss_dssp             CCEEEEEECTTBCCHHHHH---HHHHHTTCEEEEEEHHH-------------------H-------HH-----TSCCGGG
T ss_pred             CCeEEEEeCCCCCcHHHHH---HHHHHcCCceEEEEeee-------------------c-------cc-----Ccccccc
Confidence            4699999999975 34444   48889999987774321                   0       00     1112358


Q ss_pred             ccEEEEcCCCCccc-c----------cCChHHHHHHHHHHh-CCCeEEEEehHHHHHHhCc-ccCC
Q 027708           87 YDGLVIPGGRAPEY-L----------AMNDSVIDLVRKFSN-SGKTIASICHGQLILAAAD-VVKG  139 (220)
Q Consensus        87 ~D~liipGG~~~~~-~----------~~~~~l~~~l~~~~~-~g~~i~aic~G~~~La~ag-lL~g  139 (220)
                      ||+|+||||.+-.+ +          ..+..+.+.+.+++. .+++|.+||+|.++|.++| |+.|
T Consensus        52 ~~~lvipGGFSygD~l~ag~~~a~~~~~~~~~~~~~~~f~~~~~~~iLGICNGfQiL~elg~l~pg  117 (262)
T d1t3ta2          52 FHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPG  117 (262)
T ss_dssp             CSEEEECCBCGGGGTTSTTHHHHHHHHHSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTTGGGSTT
T ss_pred             cceEEEeccccccccccchhHHHhhhhhhhHHHHHHHHHhhcCCceEEeechHHHHHHHhcccCCC
Confidence            99999999975322 2          224455566666665 6899999999999999996 5555

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=3.4e-07  Score=70.56  Aligned_cols=93  Identities=17%  Similarity=0.142  Sum_probs=67.2

Q ss_pred             CeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCcc
Q 027708            9 RSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYD   88 (220)
Q Consensus         9 ~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D   88 (220)
                      +||+|+-...++  +.....++|+..|++++++......                              .+.+ +..+||
T Consensus         4 mrvli~qh~~~e--~~G~~~~~l~~~g~~~~~~~~~~~~------------------------------~~p~-~l~~~d   50 (230)
T d1o1ya_           4 VRVLAIRHVEIE--DLGMMEDIFREKNWSFDYLDTPKGE------------------------------KLER-PLEEYS   50 (230)
T ss_dssp             CEEEEECSSTTS--SCTHHHHHHHHTTCEEEEECGGGTC------------------------------CCSS-CGGGCS
T ss_pred             eEEEEEECCCCC--CcHHHHHHHHHCCCEEEEEECCCCC------------------------------cCCc-chhhCC
Confidence            588888766555  6777889999999998887542110                              1111 124799


Q ss_pred             EEEEcCCCC-cccc---cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           89 GLVIPGGRA-PEYL---AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        89 ~liipGG~~-~~~~---~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .|||+||+. +..-   .-...+.++|++..++++||.+||.|.++|+.+
T Consensus        51 ~iii~Ggp~~~~d~~~~~~~~~~~~~i~~~~~~~~PilGIC~G~Qlla~a  100 (230)
T d1o1ya_          51 LVVLLGGYMGAYEEEKYPFLKYEFQLIEEILKKEIPFLGICLGSQMLAKV  100 (230)
T ss_dssp             EEEECCCSCCTTCTTTCTHHHHHHHHHHHHHHHTCCEEEETHHHHHHHHH
T ss_pred             EEEEcCCCcccccchhhhhhHHHHHHHHHHHHhcceEEEeecCHHHHHHH
Confidence            999999863 3211   113467899999999999999999999999875

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.86  E-value=4.2e-06  Score=63.38  Aligned_cols=49  Identities=33%  Similarity=0.526  Sum_probs=33.7

Q ss_pred             CccEEEEcCCCCcc----cccCChHHHHHHHHHH-hCCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPE----YLAMNDSVIDLVRKFS-NSGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~----~~~~~~~l~~~l~~~~-~~g~~i~aic~G~~~La~a  134 (220)
                      ++|.||||||....    .+.....+.+.|.++. ..++||.+||.|.++|+..
T Consensus        42 ~~D~lIlPGgg~~~~~~~~~~~~~~~~~~i~~~~~~~gkPilGIC~G~QlL~~~   95 (218)
T d2abwa1          42 LCDGLVIPGGESTTVRRCCAYENDTLYNALVHFIHVLKKPIWGTCAGCILLSKN   95 (218)
T ss_dssp             TCSEEEECCSCHHHHHHHTTHHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEE
T ss_pred             hCCEEEEcCCCccHHHHHHHHHhccchHHHHHHHHHcCCeEEEecHHHHHHHHh
Confidence            78999999975321    1112333444455544 5799999999999999764

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=97.84  E-value=4.4e-06  Score=62.51  Aligned_cols=49  Identities=33%  Similarity=0.605  Sum_probs=37.6

Q ss_pred             CCccEEEEcC-CC-Cc--ccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           85 TKYDGLVIPG-GR-AP--EYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        85 ~~~D~liipG-G~-~~--~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ..+|.||+|| |. +.  ..+ ++..+.+.|+++.++++||.+||.|.++|+..
T Consensus        41 ~~~D~lIlPG~G~f~~~~~~l-~~~~~~~~i~~~~~~~~PiLGIClG~QlL~~~   93 (200)
T d1k9vf_          41 DLYDLLFIPGVGHFGEGMRRL-RENDLIDFVRKHVEDERYVVGVCLGMQLLFEE   93 (200)
T ss_dssp             CCCSEEEECCCSCHHHHHHHH-HHTTCHHHHHHHHHTTCEEEEETHHHHTTEEE
T ss_pred             hccCeEEEcChHHHHHHHHhh-hcccccccccccccccceEEEEecceeEEeee
Confidence            3689999999 43 11  122 23457789999999999999999999999853

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.81  E-value=1.9e-05  Score=58.91  Aligned_cols=87  Identities=18%  Similarity=0.253  Sum_probs=56.3

Q ss_pred             CeEEEEec-CCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            9 RSVLLLCG-DYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         9 ~kI~il~~-~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      +||+|+=+ +++.    ......|+..|.++.++..+                                ....++  ..|
T Consensus         2 ~ki~iiD~g~~~~----~~i~r~l~~lg~~~~i~~~d--------------------------------~~~~~~--~~~   43 (196)
T d2a9va1           2 LKIYVVDNGGQWT----HREWRVLRELGVDTKIVPND--------------------------------IDSSEL--DGL   43 (196)
T ss_dssp             CBEEEEEESCCTT----CHHHHHHHHTTCBCCEEETT--------------------------------SCGGGG--TTC
T ss_pred             CEEEEEECCCcHH----HHHHHHHHHCCCeEEEEeCC--------------------------------CCHHHH--hcC
Confidence            68888765 2332    24457788888776655321                                112222  379


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.||++||.+... .....+..+++...+.++|+.+||.|.++|+.+
T Consensus        44 dgiIl~Gg~~~~~-~~~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~   89 (196)
T d2a9va1          44 DGLVLSGGAPNID-EELDKLGSVGKYIDDHNYPILGICVGAQFIALH   89 (196)
T ss_dssp             SEEEEEEECSCGG-GTGGGHHHHHHHHHHCCSCEEEETHHHHHHHHH
T ss_pred             CcEEEeccccccc-cccchhhhHHHHHhhcCceEEEeehhhhhhhhc
Confidence            9999999864322 122334555555567899999999999999876

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.47  E-value=3.7e-05  Score=57.09  Aligned_cols=78  Identities=18%  Similarity=0.124  Sum_probs=51.9

Q ss_pred             HHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccccCCh
Q 027708           26 VPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMND  105 (220)
Q Consensus        26 ~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~~~~~  105 (220)
                      ...+.|++.|.++.++..+..                               +++++....+|.|++.||++...-..+.
T Consensus        16 Ni~~~l~~lG~~~~vi~~d~~-------------------------------~~~~i~~~~~~gvilsgGp~~~~~~~~~   64 (195)
T d1qdlb_          16 NIAQIVGELGSYPIVIRNDEI-------------------------------SIKGIERIDPDRLIISPGPGTPEKREDI   64 (195)
T ss_dssp             HHHHHHHHTTCEEEEEETTTS-------------------------------CHHHHHHHCCSEEEECCCSSCTTSHHHH
T ss_pred             HHHHHHHhCCCeEEEEeCCCC-------------------------------CHHHHHhhCCCccccCCCCCcccccccc
Confidence            446789999998888754321                               1111111258999999987532211122


Q ss_pred             HHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708          106 SVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus       106 ~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ....++.+....++|+.+||-|.++|+.+
T Consensus        65 ~~~~~i~~~~~~~~PiLGIClG~Qll~~~   93 (195)
T d1qdlb_          65 GVSLDVIKYLGKRTPILGVCLGHQAIGYA   93 (195)
T ss_dssp             TTHHHHHHHHTTTSCEEEETHHHHHHHHH
T ss_pred             ccchhhhhhhcCCCCEEEeehhhhhhhhc
Confidence            34456777788999999999999999865

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.47  E-value=0.00011  Score=53.88  Aligned_cols=75  Identities=19%  Similarity=0.345  Sum_probs=54.9

Q ss_pred             HHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccccCC
Q 027708           25 MVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMN  104 (220)
Q Consensus        25 ~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~~~~  104 (220)
                      ......|+..|.++.++..+.                                +++++..-.+|.|+++||.+..   ..
T Consensus        14 ~~i~~~L~~~G~~~~v~~~~~--------------------------------~~~~~~~~~~~gvilsgg~~~~---~~   58 (188)
T d1wl8a1          14 HRIWRTLRYLGVETKIIPNTT--------------------------------PLEEIKAMNPKGIIFSGGPSLE---NT   58 (188)
T ss_dssp             HHHHHHHHHTTCEEEEEETTC--------------------------------CHHHHHHTCCSEEEECCCSCTT---CC
T ss_pred             HHHHHHHHHCCCeEEEEeCCC--------------------------------CHHHHhhhccceeeeccCcccc---cc
Confidence            356788999999988874321                                1122222258999999987643   34


Q ss_pred             hHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708          105 DSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus       105 ~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .....++++..+.++|+.+||-|-++|+.+
T Consensus        59 ~~~~~~i~~~~~~~~PiLGIClG~Q~l~~~   88 (188)
T d1wl8a1          59 GNCEKVLEHYDEFNVPILGICLGHQLIAKF   88 (188)
T ss_dssp             TTHHHHHHTGGGTCSCEEEETHHHHHHHHH
T ss_pred             cccccccccccccccceeehhhhhhhhhhh
Confidence            456778888899999999999999999875

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00022  Score=54.23  Aligned_cols=74  Identities=22%  Similarity=0.352  Sum_probs=56.0

Q ss_pred             HHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEEcCCCCcccccCChH
Q 027708           27 PFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVIPGGRAPEYLAMNDS  106 (220)
Q Consensus        27 ~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~liipGG~~~~~~~~~~~  106 (220)
                      .+..|+..|..+.++..+.                                +++++...++|.||+.||++..  .+...
T Consensus        53 ilr~l~~~~~~~~v~p~~~--------------------------------~~~~i~~~~pdgivlS~GPg~P--~~~~~   98 (228)
T d1a9xb2          53 ILRMLVDRGCRLTIVPAQT--------------------------------SAEDVLKMNPDGIFLSNGPGDP--APCDY   98 (228)
T ss_dssp             HHHHHHHTTEEEEEEETTC--------------------------------CHHHHHTTCCSEEEECCCSBCS--TTCHH
T ss_pred             hHhHHHhcCceEEEcCCCC--------------------------------CHHHHHhcCCCEEEEeCCCCcc--ccchh
Confidence            4478888898887775432                                2222323479999999998632  24567


Q ss_pred             HHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708          107 VIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus       107 l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      ..+.++++.+.+.||.+||-|-++|+.+
T Consensus        99 ~~~~~~~~~~~~iPILGIClG~Qlia~~  126 (228)
T d1a9xb2          99 AITAIQKFLETDIPVFGICLGHQLLALA  126 (228)
T ss_dssp             HHHHHHHHTTSCCCEEEETHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEEcChHHHHHH
Confidence            8899999999999999999999999875

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=97.18  E-value=0.00012  Score=54.24  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=57.1

Q ss_pred             EEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccEEEE
Q 027708           13 LLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDGLVI   92 (220)
Q Consensus        13 il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~lii   92 (220)
                      ||+-|.++... ....+.|+..|.++.++..+..                            .+...+++...++|+|++
T Consensus         3 iliiD~~DSFt-~ni~~~l~~lG~~~~v~~~~~~----------------------------~~~~~~~l~~~~~~~iil   53 (192)
T d1i7qb_           3 ILLLDNVDSFT-YNLVDQLRASGHQVVIYRNQIG----------------------------AEVIIERLQHMEQPVLML   53 (192)
T ss_dssp             EEEEECSCSSH-HHHHHHHHHTTCEEEEEETTSC----------------------------HHHHHHHHHHCSSEEEEE
T ss_pred             EEEEECCCcHH-HHHHHHHHHCCCeEEEEeCCCc----------------------------ccccHHHHHhcCCCeEEe
Confidence            44556554321 2457789999999888754321                            000111111236899999


Q ss_pred             cCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           93 PGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        93 pGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      .||++...   +.....++++..++++||.+||-|.++|+.+
T Consensus        54 s~Gpg~~~---~~~~~~~i~~~l~~~iPiLGIClG~Q~la~~   92 (192)
T d1i7qb_          54 SPGPGTPS---EAGCMPELLQRLRGQLPIIGICLGHQAIVEA   92 (192)
T ss_dssp             CCCSSCGG---GSTTHHHHHHHHBTTBCEEEETHHHHHHHHH
T ss_pred             cCcccccc---ccccchhhHHhhhcCccEEeeeHHHHHHHHH
Confidence            88876432   1222345677788999999999999999875

>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS (MetA) {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: HTS-like
domain: Homoserine O-succinyltransferase HTS (MetA)
species: Bacillus cereus [TaxId: 1396]

Probab=97.09  E-value=0.00071  Score=52.91  Aligned_cols=57  Identities=21%  Similarity=0.341  Sum_probs=43.7

Q ss_pred             CcCCCCCCCccEEEEcCCCC-cccc---cCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           78 TFDEIDPTKYDGLVIPGGRA-PEYL---AMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        78 ~l~~~~~~~~D~liipGG~~-~~~~---~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +++++....||++||.|++- ...+   .--+++.++++....+.+++.+||-|+.+++.+
T Consensus        75 ~~~~i~~~~fDglIITGap~~~~~fedv~y~~eL~eii~~a~~~~~~~lgiCwGaQa~~~~  135 (281)
T d2ghra1          75 TFRDIENEKFDGLIITGAPVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYH  135 (281)
T ss_dssp             CHHHHTTCCEEEEEECCCSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHH
T ss_pred             hHHHhhcccCCEEEEeCCCCCcccccccccHHHHHHHHHHHHhcCCCeEEEcHHHHHHHHH
Confidence            44555556899999999863 2112   223689999999999999999999999988765

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=97.07  E-value=0.00096  Score=48.60  Aligned_cols=85  Identities=25%  Similarity=0.234  Sum_probs=58.8

Q ss_pred             eEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCccE
Q 027708           10 SVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKYDG   89 (220)
Q Consensus        10 kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~D~   89 (220)
                      ||+|+=|. .  .-+......|+..|.++.+++..                                   +++  .++|.
T Consensus         2 ki~IiD~G-~--gN~~si~~~l~~lg~~~~i~~~~-----------------------------------~~i--~~~d~   41 (195)
T d1ka9h_           2 KALLIDYG-S--GNLRSAAKALEAAGFSVAVAQDP-----------------------------------KAH--EEADL   41 (195)
T ss_dssp             EEEEECSS-C--SCHHHHHHHHHHTTCEEEEESST-----------------------------------TSC--SSCSE
T ss_pred             EEEEEeCC-C--cHHHHHHHHHHHCCCeEEEECCH-----------------------------------HHH--HHHhh
Confidence            67765432 2  24556778889999988775321                                   122  36899


Q ss_pred             EEEcCCCCcc---cccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           90 LVIPGGRAPE---YLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        90 liipGG~~~~---~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      +|+||+....   ...........+.+....++++.++|.|.++|+..
T Consensus        42 lIlpG~g~~~~~~~~~~~~~~~~~~~~~~~~g~pilGiClG~qll~~~   89 (195)
T d1ka9h_          42 LVLPGQGHFGQVMRAFQESGFVERVRRHLERGLPFLGICVGMQVLYEG   89 (195)
T ss_dssp             EEECCCSCHHHHHHTTSSSCTHHHHHHHHHTTCCEEECTHHHHTTSSE
T ss_pred             hhcCCCccccchhhhccccCCcccccccccccchhhhhhhhhheeeec
Confidence            9999986532   12234445677788888999999999999999853

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00011  Score=54.79  Aligned_cols=89  Identities=15%  Similarity=0.197  Sum_probs=57.0

Q ss_pred             CCeEEEEecCCCCchhhHHHHHHHHhCCCeEEEEcCCCCCCCCCCcccccCCCcccccccccCcccccCcCcCCCCCCCc
Q 027708            8 KRSVLLLCGDYMEDYEAMVPFQALLAFGVSVDAACPGKKSGDVCPTAVHQSTGHQQTYSETRGHNFALNATFDEIDPTKY   87 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~~~~l~~~~~~~~   87 (220)
                      ++||+||=+- ...  .......|+..|..+++++.+..                                .++.....+
T Consensus         5 ~~kI~IiD~G-~~~--~~~I~r~lr~lg~~~~I~~~d~~--------------------------------~~~~~~~~~   49 (205)
T d1gpma2           5 KHRILILDFG-SQY--TQLVARRVRELGVYCELWAWDVT--------------------------------EAQIRDFNP   49 (205)
T ss_dssp             SSEEEEEECS-CTT--HHHHHHHHHHTTCEEEEEESCCC--------------------------------HHHHHHHCC
T ss_pred             cCeEEEEECC-chH--HHHHHHHHHHCCCEEEEECCCCC--------------------------------HHHHhhcCC
Confidence            5799988652 221  12345778889998887754321                                111111258


Q ss_pred             cEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHHHhC
Q 027708           88 DGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLILAAA  134 (220)
Q Consensus        88 D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~a  134 (220)
                      |.+++.||++...   +.....++++..+.++||.+||-|-++|+.+
T Consensus        50 ~giils~gp~~~~---~~~~~~~~~~~~~~~~PiLGIClG~Qlla~~   93 (205)
T d1gpma2          50 SGIILSGGPESTT---EENSPRAPQYVFEAGVPVFGVCYGMQTMAMQ   93 (205)
T ss_dssp             SEEEECCCSSCTT---STTCCCCCGGGGTSSSCEEEETHHHHHHHHH
T ss_pred             CeEEecCCCCccc---hhhhhhHHHHHHhCCCCEEEeccchhhhhhh
Confidence            9999999876321   1112234556677899999999999999875

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0065  Score=46.37  Aligned_cols=44  Identities=20%  Similarity=0.351  Sum_probs=37.1

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL  131 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L  131 (220)
                      .++|.|+||||.+.+   .-+--+..++-+..++.|..+||.|.++.
T Consensus        56 ~~~dGIlvPGGFG~R---G~eGki~ai~yARen~iPfLGIClGmQ~a   99 (258)
T d1s1ma1          56 KGLDAILVPGGFGYR---GVEGMITTARFARENNIPYLGICLGMQVA   99 (258)
T ss_dssp             TTCSEEEECCCCSST---THHHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred             cccccEEeecccCcC---CHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence            479999999998843   45567778888888999999999999865

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.87  E-value=0.019  Score=43.53  Aligned_cols=44  Identities=18%  Similarity=0.307  Sum_probs=35.3

Q ss_pred             CCccEEEEcCCCCcccccCChHHHHHHHHHHhCCCeEEEEehHHHHH
Q 027708           85 TKYDGLVIPGGRAPEYLAMNDSVIDLVRKFSNSGKTIASICHGQLIL  131 (220)
Q Consensus        85 ~~~D~liipGG~~~~~~~~~~~l~~~l~~~~~~g~~i~aic~G~~~L  131 (220)
                      .++|.|+||||.+.+   .-+--+..++-+..++.|..+||.|.++.
T Consensus        57 ~~~dGIlvPGGFG~r---G~eGki~ai~yARen~iPfLGIClGmQ~a  100 (250)
T d1vcoa1          57 RDVSGILVPGGFGVR---GIEGKVRAAQYARERKIPYLGICLGLQIA  100 (250)
T ss_dssp             TTCSCEEECCCCSST---THHHHHHHHHHHHHTTCCEEEETHHHHHH
T ss_pred             hcCCeEEecCCCCcc---chHHHHHHHHHHHHcchhHHHHHHHHHHH
Confidence            479999999998854   23455566787888999999999999765

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.047  Score=42.17  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=31.6

Q ss_pred             CccEEEEcCCCCccc----ccCChHHHHHHHHHHh--CCCeEEEEehHHHHHHhC
Q 027708           86 KYDGLVIPGGRAPEY----LAMNDSVIDLVRKFSN--SGKTIASICHGQLILAAA  134 (220)
Q Consensus        86 ~~D~liipGG~~~~~----~~~~~~l~~~l~~~~~--~g~~i~aic~G~~~La~a  134 (220)
                      ..|.|++|||.....    ......+.++......  +..||.+||.|-.+|..+
T Consensus        59 ~idGillpGG~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~PilGIC~G~Qll~~~  113 (288)
T d1l9xa_          59 SINGILFPGGSVDLRRSDYAKVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL  113 (288)
T ss_dssp             HSSEEEECCCCCCTTTCHHHHHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred             hcCCeEecCCCCCcccccccccchHHHHHHHHHHHhhCCCCeEEEcHHHHHHHHH
Confidence            579999999964211    1112344455444444  446999999999988653

>d1fyea_ c.23.16.4 (A:) Aspartyl dipeptidase PepE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Aspartyl dipeptidase PepE
domain: Aspartyl dipeptidase PepE
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.09  E-value=0.055  Score=40.42  Aligned_cols=49  Identities=10%  Similarity=0.159  Sum_probs=39.3

Q ss_pred             CCccEEEEcCCCCccc--ccCChHHHHHHHHHHhCCCeEEEEehHHHHHHh
Q 027708           85 TKYDGLVIPGGRAPEY--LAMNDSVIDLVRKFSNSGKTIASICHGQLILAA  133 (220)
Q Consensus        85 ~~~D~liipGG~~~~~--~~~~~~l~~~l~~~~~~g~~i~aic~G~~~La~  133 (220)
                      .+.|+|++.||.....  ...+-.+.+.|++.+++|+++++..+|+.++..
T Consensus        78 ~~ad~I~v~GGn~~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~v~~~  128 (229)
T d1fyea_          78 EKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACP  128 (229)
T ss_dssp             HHCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHHHHHTSS
T ss_pred             hhCCEEEEcCCCHHHHHHHHHhCCHHHHHHHHHHcCCeEEEeChhHhhcCc
Confidence            3689999999865332  234556788999999999999999999998874

>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: D-Alanine ligase N-terminal domain
domain: D-Ala-D-Ala ligase, N-domain
species: Escherichia coli, gene ddlB [TaxId: 562]

Probab=87.93  E-value=2  Score=26.88  Aligned_cols=37  Identities=16%  Similarity=0.198  Sum_probs=26.8

Q ss_pred             CCeEEEEecCCCCchhh-----HHHHHHHHhCCCeEEEEcCC
Q 027708            8 KRSVLLLCGDYMEDYEA-----MVPFQALLAFGVSVDAACPG   44 (220)
Q Consensus         8 ~~kI~il~~~g~~~~e~-----~~~~~~l~~ag~~v~~~s~~   44 (220)
                      ++||+||.--.-++.|+     ....+.|...++++..+.+.
T Consensus         2 ~~kI~vl~GG~S~E~~iSl~Sa~~v~~~L~~~~~~v~~i~~~   43 (96)
T d1iowa1           2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPK   43 (96)
T ss_dssp             CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             CceEEEEeCcCchhhHhHHhhHHHHHHHHHHcCeeEeeecCc
Confidence            37899988554445555     56777888899999887654