Citrus Sinensis ID: 027723

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR
ccccEEEEEcccccccccccccEEccccccccccccHHHccccccccccEEEEEEcccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHccccEEEEEcccccccHHHHHHHHHccEEEEEcccccccccccccccEEEEEEccccHHcHHHHHHcccHHHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHHHcccc
cccEEEEEEcccccccccccccEEcccEcccccccccccccccccccccEEEEEcccccccHHHHHHHHHccccccEEEEcccccccccccccccccHHHHHHccEEEEcccccccccHHHHHHHHHccccEEEEccccccHHHcccHHHEEEEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccc
MANCIRALCnsdvkqgfvfgkdvslpetnvlspqnplwaiggkpasQRSILAFFAGSMHGYLRPILLhhwenkdpdmkifgqmpkakgrgkrkgktDYIQHMksskycicakgyevhspRVVEAIFYECvpviisdnfvppffeiLNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHflwhprpvkydIFHMILHSIWYNRVFLARAR
MANCIralcnsdvkqGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGqmpkakgrgkrkgKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR
MANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPkakgrgkrkgkTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR
***CIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKD****I******************YIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLA***
*ANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFL****
MANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMP*************YIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR
*ANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARA*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query219 2.2.26 [Sep-21-2011]
Q9FFN2518 Probable glycosyltransfer no no 0.917 0.388 0.492 5e-54
Q9SSE8470 Probable glycosyltransfer no no 0.913 0.425 0.457 5e-49
Q3E7Q9480 Probable glycosyltransfer no no 0.931 0.425 0.437 8e-47
Q9LFP3480 Probable glycosyltransfer no no 0.899 0.410 0.436 8e-46
Q3E9A4466 Probable glycosyltransfer no no 0.940 0.442 0.423 3e-45
Q94AA9500 Xylogalacturonan beta-1,3 no no 0.908 0.398 0.455 4e-44
Q3EAR7470 Probable glycosyltransfer no no 0.913 0.425 0.405 1e-41
Q33AH8417 Probable glucuronosyltran no no 0.703 0.369 0.320 6e-19
Q8S1X7417 Probable glucuronosyltran no no 0.703 0.369 0.320 1e-18
Q9FZJ1412 Probable beta-1,4-xylosyl no no 0.703 0.373 0.325 2e-18
>sp|Q9FFN2|GLYT3_ARATH Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2 Back     alignment and function desciption
 Score =  211 bits (536), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 104/211 (49%), Positives = 140/211 (66%), Gaps = 10/211 (4%)

Query: 3   NCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYL 62
           N IRALCN++  + F   KDVS+PE N L   +    +GG   S R ILAFFAG +HG +
Sbjct: 311 NSIRALCNANTSERFKPRKDVSIPEIN-LRTGSLTGLVGGPSPSSRPILAFFAGGVHGPV 369

Query: 63  RPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVV 122
           RP+LL HWENKD D+++   +P+          T Y   M++SK+CIC  GYEV SPR+V
Sbjct: 370 RPVLLQHWENKDNDIRVHKYLPRG---------TSYSDMMRNSKFCICPSGYEVASPRIV 420

Query: 123 EAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMV 182
           EA++  CVPV+I+  +VPPF ++LNW SF+V V   DIPNLK IL SIS ++Y +M   V
Sbjct: 421 EALYSGCVPVLINSGYVPPFSDVLNWRSFSVIVSVEDIPNLKTILTSISPRQYLRMYRRV 480

Query: 183 KKVQQHFLWHPRPVKYDIFHMILHSIWYNRV 213
            KV++HF  +    ++D+FHMILHSIW  R+
Sbjct: 481 LKVRRHFEVNSPAKRFDVFHMILHSIWVRRL 511
May be involved in cell wall biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|Q9SSE8|GLYT1_ARATH Probable glycosyltransferase At3g07620 OS=Arabidopsis thaliana GN=At3g07620 PE=3 SV=1 Back     alignment and function description
>sp|Q3E7Q9|GLYT6_ARATH Probable glycosyltransferase At5g25310 OS=Arabidopsis thaliana GN=At5g25310 PE=3 SV=2 Back     alignment and function description
>sp|Q9LFP3|GLYT4_ARATH Probable glycosyltransferase At5g11130 OS=Arabidopsis thaliana GN=At5g11120/At5g11130 PE=3 SV=2 Back     alignment and function description
>sp|Q3E9A4|GLYT5_ARATH Probable glycosyltransferase At5g20260 OS=Arabidopsis thaliana GN=At5g20260 PE=3 SV=3 Back     alignment and function description
>sp|Q94AA9|XGD1_ARATH Xylogalacturonan beta-1,3-xylosyltransferase OS=Arabidopsis thaliana GN=XGD1 PE=1 SV=2 Back     alignment and function description
>sp|Q3EAR7|GLYT2_ARATH Probable glycosyltransferase At3g42180 OS=Arabidopsis thaliana GN=At3g42180 PE=2 SV=2 Back     alignment and function description
>sp|Q33AH8|GT101_ORYSJ Probable glucuronosyltransferase GUT1 OS=Oryza sativa subsp. japonica GN=GUT1 PE=2 SV=2 Back     alignment and function description
>sp|Q8S1X7|GT15_ORYSJ Probable glucuronosyltransferase Os01g0926700 OS=Oryza sativa subsp. japonica GN=Os01g0926700 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZJ1|IRX10_ARATH Probable beta-1,4-xylosyltransferase IRX10 OS=Arabidopsis thaliana GN=IRX10 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
224142972 398 predicted protein [Populus trichocarpa] 0.981 0.540 0.808 1e-101
224092294 471 predicted protein [Populus trichocarpa] 0.981 0.456 0.794 1e-100
225429942 675 PREDICTED: probable glycosyltransferase 0.977 0.317 0.780 2e-99
356518346 633 PREDICTED: probable glycosyltransferase 0.968 0.334 0.785 6e-99
356518344 637 PREDICTED: probable glycosyltransferase 0.972 0.334 0.767 2e-97
356563757 645 PREDICTED: probable glycosyltransferase 0.972 0.330 0.767 2e-97
15233924 593 Exostosin family protein [Arabidopsis th 0.949 0.350 0.748 3e-94
297802718 583 exostosin family protein [Arabidopsis ly 0.949 0.356 0.734 4e-93
26451681270 unknown protein [Arabidopsis thaliana] 0.949 0.770 0.748 2e-92
449462352 684 PREDICTED: probable glycosyltransferase 0.949 0.304 0.752 5e-92
>gi|224142972|ref|XP_002324801.1| predicted protein [Populus trichocarpa] gi|222866235|gb|EEF03366.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/219 (80%), Positives = 194/219 (88%), Gaps = 4/219 (1%)

Query: 1   MANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHG 60
           MANCIRALCNSD K GFVFGKD +LPET V +PQN L  +GGKPAS+RSILAFFAGSMHG
Sbjct: 184 MANCIRALCNSDAKGGFVFGKDAALPETTVRTPQNLLRDLGGKPASKRSILAFFAGSMHG 243

Query: 61  YLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPR 120
           YLRPILL HW NKDPD+K+FG++PK KGRGK     +Y Q+MKSSKYCICAKG+EV+SPR
Sbjct: 244 YLRPILLQHWGNKDPDVKVFGKLPKVKGRGK----MNYPQYMKSSKYCICAKGFEVNSPR 299

Query: 121 VVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQM 180
           VVEAIFYECVPVIISDNFVPPFFE+LNWESFAVFVLE+DIPNLKNILLSI E +YR+MQM
Sbjct: 300 VVEAIFYECVPVIISDNFVPPFFEVLNWESFAVFVLEKDIPNLKNILLSIPENKYREMQM 359

Query: 181 MVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR 219
            VKKVQQHFLWH RPVKYDIFHMILHS+WYNRVF    R
Sbjct: 360 RVKKVQQHFLWHARPVKYDIFHMILHSVWYNRVFQVHPR 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092294|ref|XP_002309547.1| predicted protein [Populus trichocarpa] gi|222855523|gb|EEE93070.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225429942|ref|XP_002281263.1| PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356518346|ref|XP_003527840.1| PREDICTED: probable glycosyltransferase At5g03795-like [Glycine max] Back     alignment and taxonomy information
>gi|356518344|ref|XP_003527839.1| PREDICTED: probable glycosyltransferase At5g03795-like [Glycine max] Back     alignment and taxonomy information
>gi|356563757|ref|XP_003550126.1| PREDICTED: probable glycosyltransferase At5g03795 [Glycine max] Back     alignment and taxonomy information
>gi|15233924|ref|NP_195005.1| Exostosin family protein [Arabidopsis thaliana] gi|3063691|emb|CAA18582.1| putative protein [Arabidopsis thaliana] gi|7270226|emb|CAB79996.1| putative protein [Arabidopsis thaliana] gi|332660719|gb|AEE86119.1| Exostosin family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297802718|ref|XP_002869243.1| exostosin family protein [Arabidopsis lyrata subsp. lyrata] gi|297315079|gb|EFH45502.1| exostosin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|26451681|dbj|BAC42936.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449462352|ref|XP_004148905.1| PREDICTED: probable glycosyltransferase At5g25310-like [Cucumis sativus] gi|449523501|ref|XP_004168762.1| PREDICTED: LOW QUALITY PROTEIN: probable glycosyltransferase At5g25310-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
TAIR|locus:2125687593 AT4G32790 "AT4G32790" [Arabido 0.949 0.350 0.730 6.9e-86
TAIR|locus:2145254654 AT5G25820 "AT5G25820" [Arabido 0.949 0.318 0.722 1.7e-82
TAIR|locus:2144231546 AT5G11610 "AT5G11610" [Arabido 0.922 0.369 0.649 4.8e-71
TAIR|locus:2152632547 AT5G37000 "AT5G37000" [Arabido 0.867 0.347 0.656 3.6e-66
TAIR|locus:1009023450518 AT5G03795 [Arabidopsis thalian 0.917 0.388 0.492 6.5e-51
TAIR|locus:2091122470 AT3G07620 "AT3G07620" [Arabido 0.913 0.425 0.457 4.2e-47
TAIR|locus:2145472480 AT5G25310 "AT5G25310" [Arabido 0.922 0.420 0.436 1e-43
TAIR|locus:2145924500 XGD1 "AT5G33290" [Arabidopsis 0.908 0.398 0.450 3.2e-42
TAIR|locus:2100814470 AT3G42180 "AT3G42180" [Arabido 0.908 0.423 0.408 3.3e-40
TAIR|locus:2120933425 AT4G38040 "AT4G38040" [Arabido 0.899 0.463 0.391 2.8e-34
TAIR|locus:2125687 AT4G32790 "AT4G32790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 157/215 (73%), Positives = 184/215 (85%)

Query:     1 MANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHG 60
             MA CIRALCNSDV +GFVFGKDV+LPET +L P+ PL A+GGKP SQR ILAFFAG MHG
Sbjct:   383 MAKCIRALCNSDVSEGFVFGKDVALPETTILVPRRPLRALGGKPVSQRQILAFFAGGMHG 442

Query:    61 YLRPILLHHWE-NKDPDMKIFGQMPXXXXXXXXXXXTDYIQHMKSSKYCICAKGYEVHSP 119
             YLRP+LL +W  N+DPDMKIF ++P             Y+++MKSSKYCIC KG+EV+SP
Sbjct:   443 YLRPLLLQNWGGNRDPDMKIFSEIPKSKGKKS------YMEYMKSSKYCICPKGHEVNSP 496

Query:   120 RVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQ 179
             RVVEA+FYECVPVIISDNFVPPFFE+LNWESFAVFVLE+DIP+LKNIL+SI+E+RYR+MQ
Sbjct:   497 RVVEALFYECVPVIISDNFVPPFFEVLNWESFAVFVLEKDIPDLKNILVSITEERYREMQ 556

Query:   180 MMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVF 214
             M VK VQ+HFLWH +P ++DIFHMILHSIWYNRVF
Sbjct:   557 MRVKMVQKHFLWHSKPERFDIFHMILHSIWYNRVF 591
GO:0003824 "catalytic activity" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016020 "membrane" evidence=IEA;ISS
TAIR|locus:2145254 AT5G25820 "AT5G25820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144231 AT5G11610 "AT5G11610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152632 AT5G37000 "AT5G37000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1009023450 AT5G03795 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091122 AT3G07620 "AT3G07620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145472 AT5G25310 "AT5G25310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145924 XGD1 "AT5G33290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100814 AT3G42180 "AT3G42180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120933 AT4G38040 "AT4G38040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVIII.1195.1
hypothetical protein (380 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
pfam03016292 pfam03016, Exostosin, Exostosin family 3e-40
>gnl|CDD|217320 pfam03016, Exostosin, Exostosin family Back     alignment and domain information 
 Score =  139 bits (351), Expect = 3e-40
 Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 19/180 (10%)

Query: 1   MANCIRALCNSD--VKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSM 58
             N I A+       +  F  G DV LP     +         G P S+R  L FFAG  
Sbjct: 122 NNNTILAVLAGGGFSEDQFRPGFDVPLPAYFHPNS-VDDLESDGMPPSKRKTLLFFAGGP 180

Query: 59  H--------GYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCIC 110
                      +R +L+   +N  PD +        +G        +Y++ ++SS++C+ 
Sbjct: 181 RPAGKGALANAIRDLLIEECKN-SPDFQC-------EGNQSCGNPENYMELLRSSRFCLV 232

Query: 111 AKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI 170
             G    SPR+ +A+   C+PVIISD +  PF ++++W  F+V V E DIP+L  IL +I
Sbjct: 233 PPGDTPTSPRLFDALRAGCIPVIISDGWELPFEDVIDWSKFSVRVPENDIPSLPEILRAI 292

The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. Length = 292

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 219
KOG1021464 consensus Acetylglucosaminyltransferase EXT1/exost 100.0
PF03016302 Exostosin: Exostosin family; InterPro: IPR004263 H 100.0
KOG2264 907 consensus Exostosin EXT1L [Signal transduction mec 99.85
KOG1022 691 consensus Acetylglucosaminyltransferase EXT2/exost 99.62
PF00852349 Glyco_transf_10: Glycosyltransferase family 10 (fu 97.95
cd03801374 GT1_YqgM_like This family is most closely related 97.7
PLN02871465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 97.55
PF00534172 Glycos_transf_1: Glycosyl transferases group 1; In 97.52
cd03814364 GT1_like_2 This family is most closely related to 97.44
cd03821375 GT1_Bme6_like This family is most closely related 97.4
cd03820348 GT1_amsD_like This family is most closely related 97.35
cd03822366 GT1_ecORF704_like This family is most closely rela 97.34
cd03794394 GT1_wbuB_like This family is most closely related 97.31
cd03818396 GT1_ExpC_like This family is most closely related 97.28
TIGR03449405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 97.23
cd05844367 GT1_like_7 Glycosyltransferases catalyze the trans 97.2
cd03809365 GT1_mtfB_like This family is most closely related 97.15
TIGR03088374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 97.11
cd04962371 GT1_like_5 This family is most closely related to 96.97
cd03823359 GT1_ExpE7_like This family is most closely related 96.96
cd03819355 GT1_WavL_like This family is most closely related 96.95
PRK15427406 colanic acid biosynthesis glycosyltransferase WcaL 96.92
cd03798377 GT1_wlbH_like This family is most closely related 96.89
cd03808359 GT1_cap1E_like This family is most closely related 96.87
cd03800398 GT1_Sucrose_synthase This family is most closely r 96.78
cd04951360 GT1_WbdM_like This family is most closely related 96.67
PRK10307412 putative glycosyl transferase; Provisional 96.65
cd03807365 GT1_WbnK_like This family is most closely related 96.65
cd03804351 GT1_wbaZ_like This family is most closely related 96.58
cd03805392 GT1_ALG2_like This family is most closely related 96.5
TIGR02095473 glgA glycogen/starch synthases, ADP-glucose type. 96.47
cd03806419 GT1_ALG11_like This family is most closely related 96.4
KOG2619372 consensus Fucosyltransferase [Carbohydrate transpo 96.38
PRK15484380 lipopolysaccharide 1,2-N-acetylglucosaminetransfer 96.36
PRK09814333 beta-1,6-galactofuranosyltransferase; Provisional 96.35
TIGR02149388 glgA_Coryne glycogen synthase, Corynebacterium fam 96.24
PRK14098489 glycogen synthase; Provisional 96.2
cd03802335 GT1_AviGT4_like This family is most closely relate 96.14
PRK00654466 glgA glycogen synthase; Provisional 96.06
cd04955363 GT1_like_6 This family is most closely related to 96.03
cd04949372 GT1_gtfA_like This family is most closely related 95.82
cd03799355 GT1_amsK_like This is a family of GT1 glycosyltran 95.79
cd03817374 GT1_UGDG_like This family is most closely related 95.78
PF1352492 Glyco_trans_1_2: Glycosyl transferases group 1 95.74
PRK14099485 glycogen synthase; Provisional 95.72
PRK09922359 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D 95.56
cd03791476 GT1_Glycogen_synthase_DULL1_like This family is mo 95.52
cd03816415 GT1_ALG1_like This family is most closely related 95.38
cd03795357 GT1_like_4 This family is most closely related to 95.35
cd03796398 GT1_PIG-A_like This family is most closely related 95.31
PLN02949463 transferase, transferring glycosyl groups 95.15
cd04946407 GT1_AmsK_like This family is most closely related 95.07
TIGR02472439 sucr_P_syn_N sucrose-phosphate synthase, putative, 94.96
TIGR03087397 stp1 sugar transferase, PEP-CTERM/EpsH1 system ass 94.76
PHA01633335 putative glycosyl transferase group 1 94.69
cd03792372 GT1_Trehalose_phosphorylase Trehalose phosphorylas 94.61
cd03825365 GT1_wcfI_like This family is most closely related 94.56
cd03811353 GT1_WabH_like This family is most closely related 94.24
KOG1387465 consensus Glycosyltransferase [Cell wall/membrane/ 93.81
cd03813475 GT1_like_3 This family is most closely related to 93.78
PHA01630331 putative group 1 glycosyl transferase 93.37
PRK15490578 Vi polysaccharide biosynthesis protein TviE; Provi 93.32
cd03793590 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, 93.0
PLN02939977 transferase, transferring glycosyl groups 92.69
TIGR02468 1050 sucrsPsyn_pln sucrose phosphate synthase/possible 91.49
smart00672256 CAP10 Putative lipopolysaccharide-modifying enzyme 90.35
PF13692135 Glyco_trans_1_4: Glycosyl transferases group 1; PD 89.94
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 89.15
cd04950373 GT1_like_1 Glycosyltransferases catalyze the trans 88.82
PLN023161036 synthase/transferase 87.99
PLN02605382 monogalactosyldiacylglycerol synthase 87.84
TIGR02918500 accessory Sec system glycosylation protein GtfA. M 85.78
PRK13608391 diacylglycerol glucosyltransferase; Provisional 84.52
cd01635229 Glycosyltransferase_GTB_type Glycosyltransferases 84.41
PLN00142815 sucrose synthase 84.22
cd03812358 GT1_CapH_like This family is most closely related 84.18
PRK10125405 putative glycosyl transferase; Provisional 83.68
PF05686395 Glyco_transf_90: Glycosyl transferase family 90; I 83.42
cd03788460 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a 83.2
COG0438381 RfaG Glycosyltransferase [Cell envelope biogenesis 81.6
PRK15179694 Vi polysaccharide biosynthesis protein TviE; Provi 81.36
PRK00726357 murG undecaprenyldiphospho-muramoylpentapeptide be 80.59
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-43  Score=324.85  Aligned_cols=212  Identities=43%  Similarity=0.748  Sum_probs=187.7

Q ss_pred             Ccceeeeec-CCCCCCCccC-CcEeeCCCCCCCCCCccc--ccCCCCCCCCceEEEeecc-CCCccHHHHHHHhhcCCCC
Q 027723            2 ANCIRALCN-SDVKQGFVFG-KDVSLPETNVLSPQNPLW--AIGGKPASQRSILAFFAGS-MHGYLRPILLHHWENKDPD   76 (219)
Q Consensus         2 ~n~i~~~~~-~~~~~~~rp~-~DV~iP~~~~~~~~~~~~--~~~~~~~~~R~~L~~F~G~-~~~~~R~~L~~~~~~~~~~   76 (219)
                      .+.|+.+|+ +..+..+.++ +||+||+.+..++.....  .....+..+|++|+||+|+ .+|.+|..|.++|++ +++
T Consensus       239 ~~~i~~~~n~a~ls~~~~~~~~dv~iP~~~~~~~~~~~~~~~~~~~~~~~R~~L~~F~G~~~~~~iR~~L~~~~~~-~~~  317 (464)
T KOG1021|consen  239 ISLIPEFCNGALLSLEFFPWNKDVAIPYPTIPHPLSPPENSWQGGVPFSNRPILAFFAGAPAGGQIRSILLDLWKK-DPD  317 (464)
T ss_pred             HHHHHhhCCcceeecccccCCCcccCCCccCcCccCccccccccCCCCCCCceEEEEeccccCCcHHHHHHHHhhc-CcC
Confidence            356788999 8889999999 999999987777654432  1234566899999999999 899999999999998 555


Q ss_pred             eEEeecCCCCCCCCcccCcchHHhhccCccEEEEeCCCCCCchhHHHHHhcCcEeEEeeCCccCCCcccCCCCcEEEEEc
Q 027723           77 MKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVL  156 (219)
Q Consensus        77 ~~v~~~~~~~~g~~~~~~~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dai~~GCIPVii~d~~~lPF~~~idw~~fsv~i~  156 (219)
                      ......|+...  +.+.+...|.+.|++|+|||||+|+++++.|+||||.+|||||||+|++.+||++++||++|||+|+
T Consensus       318 ~~~~~~~~~g~--~~~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~  395 (464)
T KOG1021|consen  318 TEVFVNCPRGK--VSCDRPLNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVP  395 (464)
T ss_pred             ccccccCCCCc--cccCCcchHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEE
Confidence            56666787532  3345688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhH-HHHHhcCCHHHHHHHHHHHH-HHhhheeecC--CCCCcCHHHHHHHHHHHHhhhhh
Q 027723          157 ERDIPNL-KNILLSISEKRYRKMQMMVK-KVQQHFLWHP--RPVKYDIFHMILHSIWYNRVFLA  216 (219)
Q Consensus       157 ~~~~~~l-~~~L~~i~~~~~~~mr~~~~-~~~~~f~y~~--~~~~~daf~~~l~~l~~r~~~~~  216 (219)
                      +++++++ .++|.+++.+++.+||+++. .+.++|.|..  +.+.+||||++++++|+|+++..
T Consensus       396 ~~~v~~~~~~iL~~i~~~~~~~m~~~v~~~v~r~~~~~~~~~~~~~da~~~~~~~v~~r~~~~~  459 (464)
T KOG1021|consen  396 EKDVPELIKNILLSIPEEEVLRMRENVIRLVPRHFLKKPPGPPKRGDAFHMILHSLWRRLHKLR  459 (464)
T ss_pred             HHHhhhHHHHHHHhcCHHHHHHHHHHHHHHHHhhEEeCCCCCCCcchhHHHHHhhhhhcccccc
Confidence            9999998 99999999999999999999 4999999998  88999999999999999999865

>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses [] Back     alignment and domain information
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms] Back     alignment and domain information
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] Back     alignment and domain information
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional Back     alignment and domain information
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Back     alignment and domain information
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1 Back     alignment and domain information
>PRK14099 glycogen synthase; Provisional Back     alignment and domain information
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02949 transferase, transferring glycosyl groups Back     alignment and domain information
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain Back     alignment and domain information
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>PHA01633 putative glycosyl transferase group 1 Back     alignment and domain information
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PHA01630 putative group 1 glycosyl transferase Back     alignment and domain information
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant Back     alignment and domain information
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme Back     alignment and domain information
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PLN02316 synthase/transferase Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>TIGR02918 accessory Sec system glycosylation protein GtfA Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PLN00142 sucrose synthase Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK10125 putative glycosyl transferase; Provisional Back     alignment and domain information
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS Back     alignment and domain information
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor Back     alignment and domain information
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 87/253 (34%)

Query: 1   MANCIRALCNSDVKQGF----VFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAG 56
           + + +  L  ++ ++ F    VF     +P   +LS    +W      +    ++     
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-ILLS---LIWF-DVIKSDVMVVVN---- 409

Query: 57  SMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEV 116
            +H Y    L+     K P                 K  T  I  +           Y +
Sbjct: 410 KLHKYS---LV----EKQP-----------------KESTISIPSIYLELKVKLENEYAL 445

Query: 117 HSPRVVEAIFYECVPVIISDNFVPP-----FF--------EILNWESFAVFV-------- 155
           H   +V+   Y       SD+ +PP     F+         I + E   +F         
Sbjct: 446 HR-SIVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 156 LERDI----------PNLKNILLSISEKRYRK--------MQMMVKKVQQHFLWHPRPVK 197
           LE+ I           ++ N L  +  K Y+          + +V  +   FL       
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQL--KFYKPYICDNDPKYERLVNAI-LDFLPKIEENL 559

Query: 198 Y-----DIFHMIL 205
                 D+  + L
Sbjct: 560 ICSKYTDLLRIAL 572

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
3qhp_A166 Type 1 capsular polysaccharide biosynthesis prote 98.27
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 97.81
3c48_A438 Predicted glycosyltransferases; retaining glycosyl 97.57
3okp_A394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 97.54
2gek_A406 Phosphatidylinositol mannosyltransferase (PIMA); G 97.38
2jjm_A394 Glycosyl transferase, group 1 family protein; anth 97.04
2nzw_A371 Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {H 96.9
2r60_A499 Glycosyl transferase, group 1; rossmann-fold; 1.80 96.89
2iw1_A374 Lipopolysaccharide core biosynthesis protein RFAG; 96.87
1f0k_A364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 96.86
2f9f_A177 First mannosyl transferase (WBAZ-1); alpha-beta pr 96.79
3fro_A439 GLGA glycogen synthase; glycosyltransferase family 96.78
1rzu_A485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 96.38
3oy2_A413 Glycosyltransferase B736L; rossmann fold, GDP-mann 96.15
2x6q_A416 Trehalose-synthase TRET; biosynthetic protein; 2.2 96.14
2iuy_A342 Avigt4, glycosyltransferase; antibiotics, family G 96.12
3rhz_A339 GTF3, nucleotide sugar synthetase-like protein; gl 95.51
2x0d_A413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 95.46
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 95.42
2qzs_A485 Glycogen synthase; glycosyl-transferase, GT-B fold 94.9
1vgv_A384 UDP-N-acetylglucosamine 2-epimerase; structural ge 94.35
3vue_A536 GBSS-I, granule-bound starch synthase 1, chloropla 93.79
3beo_A375 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a 93.64
3s28_A816 Sucrose synthase 1; glycosyltransferase, sucrose m 91.96
1uqt_A482 Alpha, alpha-trehalose-phosphate synthase; glycosy 89.94
3nb0_A725 Glycogen [starch] synthase isoform 2; glycogen syn 86.51
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 86.08
3dzc_A396 UDP-N-acetylglucosamine 2-epimerase; structural ge 86.0
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 83.74
2hy7_A406 Glucuronosyltransferase GUMK; glycosyltransferases 82.58
2ygg_A70 Sodium/hydrogen exchanger 1; metal binding protein 81.2
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Back     alignment and structure
Probab=98.27  E-value=8.6e-06  Score=62.80  Aligned_cols=129  Identities=15%  Similarity=0.126  Sum_probs=83.7

Q ss_pred             ceEEEeeccCCCccHHHHHHHhhcCCCCeEEeecCCCCCCCCcccCcchHHhhccCccEEEEeCCCCCCchhHHHHHhcC
Q 027723           49 SILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYE  128 (219)
Q Consensus        49 ~~L~~F~G~~~~~~R~~L~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~y~~~~~~S~FCl~p~G~~~~s~Rl~dai~~G  128 (219)
                      ++-+.+.|.  |..+..+.+..+.....+.+ +..          ...+..+.|..+..++.|.-.......++|||++|
T Consensus        32 ~~~l~i~G~--g~~~~~~~~~~~~~~~~v~~-g~~----------~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G   98 (166)
T 3qhp_A           32 DIVLLLKGK--GPDEKKIKLLAQKLGVKAEF-GFV----------NSNELLEILKTCTLYVHAANVESEAIACLEAISVG   98 (166)
T ss_dssp             GEEEEEECC--STTHHHHHHHHHHHTCEEEC-CCC----------CHHHHHHHHTTCSEEEECCCSCCCCHHHHHHHHTT
T ss_pred             CeEEEEEeC--CccHHHHHHHHHHcCCeEEE-eec----------CHHHHHHHHHhCCEEEECCcccCccHHHHHHHhcC
Confidence            566777774  34455555444332222333 322          24678899999999999976655678999999999


Q ss_pred             cEeEEeeCCccCCCcccCCCCcEEEEEcCCChhhHHHHHhcC--CHHHHHHHHHHHHHHhhheeecC
Q 027723          129 CVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SEKRYRKMQMMVKKVQQHFLWHP  193 (219)
Q Consensus       129 CIPVii~d~~~lPF~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~~~~~~mr~~~~~~~~~f~y~~  193 (219)
                      |+|||..+..- ...+++.-...  .++..+..++.+.|..+  +++...+|.++.++..++|.|+.
T Consensus        99 ~vPvi~~~~~~-~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~  162 (166)
T 3qhp_A           99 IVPVIANSPLS-ATRQFALDERS--LFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALNYTLEN  162 (166)
T ss_dssp             CCEEEECCTTC-GGGGGCSSGGG--EECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCcEEeeCCCC-chhhhccCCce--EEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHCChhh
Confidence            99999944211 12233333333  56677777766666554  68888999999888778888764
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A* Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Back     alignment and structure
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Back     alignment and structure
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
d2nzwa1349 Alpha1,3-fucosyltransferase FucT {Helicobacter pyl 97.64
d2bisa1437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 97.14
d2f9fa1166 First mannosyl transferase WbaZ {Archaeoglobus ful 96.55
d1rzua_477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 96.29
d2iw1a1370 Lipopolysaccharide core biosynthesis protein RfaG 96.14
d2bfwa1196 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 96.02
d1f0ka_351 Peptidoglycan biosynthesis glycosyltransferase Mur 88.4
d1uqta_456 Trehalose-6-phosphate synthase, OtsA {Escherichia 83.07
>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: FucT-like
domain: Alpha1,3-fucosyltransferase FucT
species: Helicobacter pylori [TaxId: 210]

Probab=97.64  E-value=0.00018  Score=62.10  Aligned_cols=125  Identities=11%  Similarity=0.192  Sum_probs=84.4

Q ss_pred             CCCCceEEEee-ccCCCccHHHHHHHhhcCCCCeEEeecCCCCCCCCcccCcchHHhhccCccEEEEeCCC---CCCchh
Q 027723           45 ASQRSILAFFA-GSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGY---EVHSPR  120 (219)
Q Consensus        45 ~~~R~~L~~F~-G~~~~~~R~~L~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~y~~~~~~S~FCl~p~G~---~~~s~R  120 (219)
                      ...++-++.|. +...+..|..+.+.++... .|...+.|-+..|    ....+-.+.|.+-+|+||..-.   +..|--
T Consensus       176 ~~~K~kFcs~v~Sn~~~~~R~~~~~~L~k~~-~Vd~~G~~~nn~~----~~~~~K~~~l~~ykF~l~~EN~~~~~YvTEK  250 (349)
T d2nzwa1         176 DPLKRGFASFVASNPNAPIRNAFYDALNSIE-PVTGGGSVRNTLG----YNVKNKNEFLSQYKFNLCFENTQGYGYVTEK  250 (349)
T ss_dssp             CTTSSEEEEECCSCCCCHHHHHHHHHHTTTS-CCEECSSTTCCSS----SCCSCHHHHHTTEEEEEEECSSCCTTCCCTH
T ss_pred             ccccCceEEEEEcCCCCchHHHHHHHHhccC-eecccCccccCCC----CchhhHHHHHhCCCeEEEECCcCCCCCcchH
Confidence            34455555554 4444568999999887654 5777777754332    1234567889999999999643   567899


Q ss_pred             HHHHHhcCcEeEEeeCC-c--cCCCcccCCCCcEEEEEcCCChhhHHHHHhcCC--HHHHHHHHH
Q 027723          121 VVEAIFYECVPVIISDN-F--VPPFFEILNWESFAVFVLERDIPNLKNILLSIS--EKRYRKMQM  180 (219)
Q Consensus       121 l~dai~~GCIPVii~d~-~--~lPF~~~idw~~fsv~i~~~~~~~l~~~L~~i~--~~~~~~mr~  180 (219)
                      ++||+.+|||||..++. +  .+|=...|+..+|      ..+.+|.+.|..|+  ++.+.+|-.
T Consensus       251 i~da~~~g~iPIy~G~~~i~~~f~~~sfI~~~df------~s~~el~~~i~~l~~n~~~Y~~~~~  309 (349)
T d2nzwa1         251 IIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDF------KNFDEAIDYIKYLHTHKNAYLDMLY  309 (349)
T ss_dssp             HHHHHHTTCEEEEESCTTGGGTSCGGGSEEGGGS------SSHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHhCCeEEEEECCCcHHHcCCCccEEEhhhC------CCHHHHHHHHHHHhcCHHHHHHHHh
Confidence            99999999999999973 2  2443334444443      35677888887774  666666654
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure