Citrus Sinensis ID: 027730

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MGPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKIVGTSKNFQKRKNRLAMGSDSEDSYSSSIHGKLKNRDFSSNNNNKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF
Secondary Structure (PSIPRED)
cccccccccccccHHHHHccccccccccccccccccccEEEcccccccccHHHHHcccccccEEEEEcccccEEEEcccccEEEccccEEEEEcccEEEEcccccccccccccccccccccccccccccEEccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHccccHHccccccccccEEEEEcccccHHHHHccccccccEEEEEEEEcccEEEHHHHHHHEcccccEEEEEcccEEEEEccccccccccccccccHHHHccccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccEEEEEc
Coil and Loop (DISEMBL)
mgpdeednrwppwlkpllreSFFVqcklhpdshksecnmycldcmngafcsLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFlnerpqprpgkgvtntcevcdrslldsfrfcslgckivgtsknfqkrknrlamgsdsedsysssihgklknrdfssnnnnkmqsfspstppptavSHRISkrrkgiphrapmggllief
Flexible Loop (DISEMBL)
mgpdeednrwppwLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRrssyhdvirvSEIQKVLDISGVQTYVINSARVVflnerpqprpgkgvtntCEVCDRSLLDSFRFCSLGCkivgtsknfqkrknrlamgsdsedsysssIHGKLKNRDFSSNNNNKMqsfspstppptAVSHRiskrrkgiphrapmggllief
Low Complexity Region (SEG)
MGPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKIVGTSKNFQKRKNRLAMGsdsedsysssIHGKLKNRDFSSNNNNKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF
Disordered region (IsUnstruct)
*********WPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNE*******KGVTNTCEVCDRSLLDSFRFCSLGCKIVGTS******************************************************************************
Disordered Region (DISOPRED)
*************LKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVF****************CEVCDRSLLDSFRFCSLGCKIVG********************************************************************HRAPMGGLLIEF
Disordered Region (DISEMBL)
*********WPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKIVGTSKNFQKRK*****************HGKLKNRDFSSNNNNK***********************GIPHRAPMGGLLIEF
Disordered Region (DISPRO)
*******NRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKIVGTSK***************************************************************IPHRAPMGGLLIEF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKIVGTSKNFQKRKNRLAMGSDSEDSYSSSIHGKLKNRDFSSNNNNKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
110681464	233	putative zinc-binding protein [Platanus	0.954	0.896	0.793	3e-98
225427189	262	PREDICTED: uncharacterized protein LOC10	0.958	0.801	0.827	4e-98
147833550	244	hypothetical protein VITISV_016796 [Viti	0.958	0.860	0.827	4e-98
217072374	240	unknown [Medicago truncatula] gi|3885098	0.958	0.875	0.786	1e-97
357485195	240	hypothetical protein MTR_5g030130 [Medic	0.958	0.875	0.781	2e-97
255573491	223	protein with unknown function [Ricinus c	0.981	0.964	0.823	6e-97
449436818	220	PREDICTED: uncharacterized protein LOC10	0.977	0.972	0.778	1e-95
356496400	236	PREDICTED: uncharacterized protein LOC10	0.958	0.889	0.790	1e-95
356531421	236	PREDICTED: uncharacterized protein LOC10	0.958	0.889	0.781	2e-95
383932350	214	PLATZ [Gossypium hirsutum]	0.954	0.976	0.821	2e-95

>gi|110681464|emb|CAL25342.1| putative zinc-binding protein [Platanus x acerifolia]

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 173/218 (79%), Positives = 188/218 (86%), Gaps = 9/218 (4%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GP++EDN+WPPWL PLL+  FFVQCK H DSHK ECNMYCLDCMNGA CSLCL YHKDHR
Sbjct: 25  GPEDEDNKWPPWLSPLLQTRFFVQCKFHADSHKCECNMYCLDCMNGALCSLCLSYHKDHR 84

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 85  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCE 144

Query: 122 RSLLDSFRFCSLGCKIVGTSKNFQKRKNRLAMGSDSEDSYSSSIHGKLKNRDFSSNNNNK 181
           RSLLDSFRFCSLGCKIVGTSKN+QK+K   A  SDSE+SYS         R  +S    K
Sbjct: 145 RSLLDSFRFCSLGCKIVGTSKNYQKKKRSQATTSDSEESYS--------GRSLAS-EKIK 195

Query: 182 MQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF 219
           +QSF+PSTPPPT V++R +KRRKGIPHRAPMGGL+IEF
Sbjct: 196 VQSFTPSTPPPTVVNYRTAKRRKGIPHRAPMGGLIIEF 233

Source: Platanus x acerifolia

Species: Platanus x acerifolia

Genus: Platanus

Family: Platanaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427189|ref|XP_002277964.1| PREDICTED: uncharacterized protein LOC100250554 [Vitis vinifera] gi|297742091|emb|CBI33878.3| unnamed protein product [Vitis vinifera]

 Score =  363 bits (931), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 182/220 (82%), Positives = 196/220 (89%), Gaps = 10/220 (4%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPDEEDNRWPPWLKPLLRESFFVQCKLH DSHKSECNMYCLDCMNGA CSLCL YHKDHR
Sbjct: 50  GPDEEDNRWPPWLKPLLRESFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLGYHKDHR 109

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 110 AIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCE 169

Query: 122 RSLLDSFRFCSLGCKIVGTSKNFQKRKNR--LAMGSDSEDSYSSSIHGKLKNRDFSSNNN 179
           RSLLDSFRFCSLGCKIVGTS NFQK+K++      SDSE+SYSSS HG+           
Sbjct: 170 RSLLDSFRFCSLGCKIVGTSTNFQKKKHQQPATASSDSEESYSSSSHGR--------QAL 221

Query: 180 NKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF 219
           N +QSFSPSTPPPTAV++R +KRRKGIPHRAPMGGL+IE+
Sbjct: 222 NAVQSFSPSTPPPTAVNYRTAKRRKGIPHRAPMGGLIIEY 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833550|emb|CAN63851.1| hypothetical protein VITISV_016796 [Vitis vinifera]

 Score =  362 bits (930), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 182/220 (82%), Positives = 196/220 (89%), Gaps = 10/220 (4%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPDEEDNRWPPWLKPLLRESFFVQCKLH DSHKSECNMYCLDCMNGA CSLCL YHKDHR
Sbjct: 32  GPDEEDNRWPPWLKPLLRESFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLGYHKDHR 91

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 92  AIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCE 151

Query: 122 RSLLDSFRFCSLGCKIVGTSKNFQKRKNR--LAMGSDSEDSYSSSIHGKLKNRDFSSNNN 179
           RSLLDSFRFCSLGCKIVGTS NFQK+K++      SDSE+SYSSS HG+           
Sbjct: 152 RSLLDSFRFCSLGCKIVGTSTNFQKKKHQQPATASSDSEESYSSSSHGR--------QAQ 203

Query: 180 NKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF 219
           N +QSFSPSTPPPTAV++R +KRRKGIPHRAPMGGL+IE+
Sbjct: 204 NAVQSFSPSTPPPTAVNYRTAKRRKGIPHRAPMGGLIIEY 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072374|gb|ACJ84547.1| unknown [Medicago truncatula] gi|388509820|gb|AFK42976.1| unknown [Medicago truncatula]

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/220 (78%), Positives = 195/220 (88%), Gaps = 10/220 (4%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPD++DNRWPPWLKPLL+E+FFVQCK+H DSHKSECNMYCLDCMNG  CSLCL YHKDHR
Sbjct: 26  GPDDDDNRWPPWLKPLLKEAFFVQCKIHADSHKSECNMYCLDCMNGPLCSLCLAYHKDHR 85

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
            IQIRRSSYHDVIRV+EIQK LDI+GVQTYVINSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 86  YIQIRRSSYHDVIRVNEIQKHLDIAGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCE 145

Query: 122 RSLLDSFRFCSLGCKIVGTSKNFQKRKNRL-AMGSDSEDSYSS-SIHGKLKNRDFSSNNN 179
           RSLLDSFRFCSLGCKIVGTSKNFQK+K  L AM SDSE+SYSS +IH + K         
Sbjct: 146 RSLLDSFRFCSLGCKIVGTSKNFQKKKRHLTAMASDSEESYSSNNIHSRQKKI------- 198

Query: 180 NKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF 219
            K+QSF+PSTPPPT+V++R +KRRKGIPHRAP+GGL +++
Sbjct: 199 -KVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPLGGLDVDY 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485195|ref|XP_003612885.1| hypothetical protein MTR_5g030130 [Medicago truncatula] gi|355514220|gb|AES95843.1| hypothetical protein MTR_5g030130 [Medicago truncatula]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 172/220 (78%), Positives = 195/220 (88%), Gaps = 10/220 (4%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPD++DNRWPPWLKPLL+E+FFVQCK+H DSHKSECNMYCLDCMNG  CSLCL YHKDHR
Sbjct: 26  GPDDDDNRWPPWLKPLLKEAFFVQCKIHADSHKSECNMYCLDCMNGPLCSLCLAYHKDHR 85

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
            IQIRRSSYHDVIRV+EIQK LDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 86  YIQIRRSSYHDVIRVNEIQKHLDIAGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCE 145

Query: 122 RSLLDSFRFCSLGCKIVGTSKNFQKRKNRL-AMGSDSEDSYSS-SIHGKLKNRDFSSNNN 179
           RSLLDSFRFCSLGCKIVGTSKNFQK+K  L AM SDSE+SYSS +IH + K         
Sbjct: 146 RSLLDSFRFCSLGCKIVGTSKNFQKKKRHLTAMASDSEESYSSNNIHSRQKKI------- 198

Query: 180 NKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF 219
            K+QSF+PSTPPPT+V++R +KRRKGIPHRAP+GGL +++
Sbjct: 199 -KVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPLGGLDVDY 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573491|ref|XP_002527671.1| protein with unknown function [Ricinus communis] gi|223532976|gb|EEF34742.1| protein with unknown function [Ricinus communis]

 Score =  358 bits (920), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 182/221 (82%), Positives = 200/221 (90%), Gaps = 6/221 (2%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GP +EDNRWPPWLKPLL+ESFFVQCKLH DSHKSECNMYCLDCMNGA CSLCL  HKDH+
Sbjct: 5   GPVDEDNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLACHKDHQ 64

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 65  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCE 124

Query: 122 RSLLDSFRFCSLGCKIVGTSKNFQ-KRKNRLAM--GSDSEDSYSSSIHGKLKNRDFSSNN 178
           RSLLDSFRFCSLGCKIVGTSKNFQ K+K + AM   S+   SYSSS HG+ KN +   ++
Sbjct: 125 RSLLDSFRFCSLGCKIVGTSKNFQRKKKQQTAMMSDSEDSYSYSSSSHGQYKNHN---DD 181

Query: 179 NNKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF 219
           ++K+QSFSPSTPPPT+VS+R +KRRKGIPHRAPMGGL+IEF
Sbjct: 182 DHKVQSFSPSTPPPTSVSYRSAKRRKGIPHRAPMGGLIIEF 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436818|ref|XP_004136189.1| PREDICTED: uncharacterized protein LOC101209912 [Cucumis sativus] gi|449534353|ref|XP_004174127.1| PREDICTED: uncharacterized protein LOC101231296 [Cucumis sativus]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 169/217 (77%), Positives = 190/217 (87%), Gaps = 3/217 (1%)

Query: 3   PDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRA 62
           P +EDNRWPPWLKPLLRESFFVQCK H DSHKSECNMYCLDCMNGA CSLCL +HKDHRA
Sbjct: 7   PVDEDNRWPPWLKPLLRESFFVQCKFHADSHKSECNMYCLDCMNGALCSLCLAFHKDHRA 66

Query: 63  IQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDR 122
           IQIRRSSYHDVIRVSEIQKVLDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC+R
Sbjct: 67  IQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCER 126

Query: 123 SLLDSFRFCSLGCKIVGTSKNFQKRKNRLAMGSDSEDSYSSSIHGKLKNRDFSSNNNNKM 182
           SLLDSFRFCSLGCKIVGTSKN++K++  +   S+     S+S  G++     +SN N  +
Sbjct: 127 SLLDSFRFCSLGCKIVGTSKNYEKKRRVMGSDSEDSSYSSNSSQGRIMK---NSNKNRVV 183

Query: 183 QSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF 219
           QSF+PSTPPPT VS+R +KRRKGIPHRAPMGGL+IE+
Sbjct: 184 QSFTPSTPPPTLVSYRTAKRRKGIPHRAPMGGLIIEY 220

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496400|ref|XP_003517056.1| PREDICTED: uncharacterized protein LOC100797900 [Glycine max]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/220 (79%), Positives = 193/220 (87%), Gaps = 10/220 (4%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPD+EDNRWPPWLKPLL+ESFFVQCKLH DSHKSECNMYCLDCMNG  CSLCL +HKDHR
Sbjct: 25  GPDDEDNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGPLCSLCLAHHKDHR 84

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 85  AIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCE 144

Query: 122 RSLLDSFRFCSLGCKIVGTSKNFQKRKNR-LAM-GSDSEDSYSSSIHGKLKNRDFSSNNN 179
           RSLLDSFRFCSLGCKIVGTSKNFQKRK + +AM     +   S+S+HG  K        N
Sbjct: 145 RSLLDSFRFCSLGCKIVGTSKNFQKRKKQSMAMSSDSEDSYSSNSVHGLKK--------N 196

Query: 180 NKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF 219
            K+QSF+PSTPPPT+V++R +KRRKGIPHRAPM GL+IE+
Sbjct: 197 CKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMVGLIIEY 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531421|ref|XP_003534276.1| PREDICTED: uncharacterized protein LOC100791221 [Glycine max]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 172/220 (78%), Positives = 191/220 (86%), Gaps = 10/220 (4%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPD++DNRWPPWLKPLL+ESFFVQCKLH DSHKSECNMYCLDCMNG  CSLCL +HKDHR
Sbjct: 25  GPDDDDNRWPPWLKPLLKESFFVQCKLHADSHKSECNMYCLDCMNGPLCSLCLAHHKDHR 84

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
           AIQIRRSSYHDVIRVSEIQKVLDI+GVQTY+INSARVVFLNERPQPRPGKGVTNTCEVC+
Sbjct: 85  AIQIRRSSYHDVIRVSEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCE 144

Query: 122 RSLLDSFRFCSLGCKIVGTSKNFQKRKNR--LAMGSDSEDSYSSSIHGKLKNRDFSSNNN 179
           RSLLDSFRFCSLGCKIVGTSKNFQKRK +  L      +   S+S+HG  K        N
Sbjct: 145 RSLLDSFRFCSLGCKIVGTSKNFQKRKKQSMLMSSDSEDSYSSNSVHGLKK--------N 196

Query: 180 NKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF 219
            K+QSF+PSTPPPT+V++R +KRRKGIPHRAPM GL+IE+
Sbjct: 197 FKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPMVGLIIEY 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932350|gb|AFH57272.1| PLATZ [Gossypium hirsutum]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 180/219 (82%), Positives = 195/219 (89%), Gaps = 10/219 (4%)

Query: 2   GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
           GPDEEDNRWPPWLKPLL E FFVQCKLH DSHKSECNMYCLDCMNGA CSLCL +HKDHR
Sbjct: 5   GPDEEDNRWPPWLKPLLGEHFFVQCKLHADSHKSECNMYCLDCMNGALCSLCLAHHKDHR 64

Query: 62  AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
            IQIRRSSYHDV RVSEIQK LDISGVQTYVINSA+VVF+NERPQPRPGKGVTNTCEVCD
Sbjct: 65  YIQIRRSSYHDVTRVSEIQKYLDISGVQTYVINSAKVVFINERPQPRPGKGVTNTCEVCD 124

Query: 122 RSLLDSFRFCSLGCKIVGTSKNFQKRKNRL-AMGSDSEDSYSSSIHGKLKNRDFSSNNNN 180
           RSL+DSFRFCSLGCKIVGTSK+FQK+K  + AM SDSEDSYSSS HGKL         NN
Sbjct: 125 RSLVDSFRFCSLGCKIVGTSKDFQKKKRHMAAMASDSEDSYSSSGHGKL---------NN 175

Query: 181 KMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF 219
           K+QSF PSTPPPT+V++R +KRRKGIPHRAPMGGL+I++
Sbjct: 176 KVQSFRPSTPPPTSVNYRTAKRRKGIPHRAPMGGLIIQY 214

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2035614	213	AT1G32700 [Arabidopsis thalian	0.963	0.990	0.705	4.2e-79
TAIR|locus:2141070	227	AT4G17900 [Arabidopsis thalian	0.917	0.885	0.700	1.6e-77
TAIR|locus:2037405	246	AT1G21000 [Arabidopsis thalian	0.634	0.565	0.694	1.1e-62
TAIR|locus:2011721	245	AT1G76590 [Arabidopsis thalian	0.652	0.583	0.666	2.9e-60
TAIR|locus:2178580	226	AT5G46710 [Arabidopsis thalian	0.913	0.884	0.547	8.4e-58
TAIR|locus:2009879	216	AT1G43000 [Arabidopsis thalian	0.949	0.962	0.471	3.2e-49
TAIR|locus:2057867	189	AT2G27930 [Arabidopsis thalian	0.643	0.746	0.562	1.1e-48
TAIR|locus:1009023224	256	AT2G12646 "AT2G12646" [Arabido	0.611	0.523	0.474	1.9e-35
TAIR|locus:2015761	243	AT1G31040 [Arabidopsis thalian	0.570	0.514	0.472	9e-34
TAIR|locus:2101881	245	AT3G60670 [Arabidopsis thalian	0.598	0.534	0.469	1.1e-31

TAIR|locus:2035614 AT1G32700 [Arabidopsis thaliana (taxid:3702)]

 Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
 Identities = 156/221 (70%), Positives = 172/221 (77%)

Query:     1 MGPDEEDNR-WPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKD 59
             MG +EE N+ +P WLKPLLRE FFVQCKLH DSHKSECNMYCLDC NG  CSLCL +HKD
Sbjct:     1 MGAEEETNKTYPHWLKPLLREKFFVQCKLHADSHKSECNMYCLDCTNGPLCSLCLSFHKD 60

Query:    60 HRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEV 119
             H AIQIRRSSYHDVIRVSEIQK LDI+GVQTYVINSA+VVFLNERPQPRPGKGV NTCEV
Sbjct:    61 HHAIQIRRSSYHDVIRVSEIQKFLDITGVQTYVINSAKVVFLNERPQPRPGKGVINTCEV 120

Query:   120 CDRSLLDSFRFCSLGCKIVGTSKNFQKR-KNRLAMGXXXXXXXXXXIHGKLKNRDFSSNN 178
             C RSL+DSFRFCSLGCKI G SK  +K   N L+              G+LK  D   NN
Sbjct:   121 CYRSLVDSFRFCSLGCKISGISKKKRKEWTNNLSDSDDSYSSTSI---GRLKKNDDIMNN 177

Query:   179 NNKMQSFSPSTPPPTAVSHRISKRRKGIPHRAPMGGLLIEF 219
                  SF+PSTPP +AV+ RI+KRRKGIPHRAP GGL+IE+
Sbjct:   178 -----SFTPSTPPLSAVNRRIAKRRKGIPHRAPFGGLIIEY 213

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2141070 AT4G17900 [Arabidopsis thaliana (taxid:3702)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 150/214 (70%), Positives = 165/214 (77%)

Query:     2 GPDEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHR 61
             GP+EE+NRWPPWLKPLL+E FFV CK H DSHKSECNMYCLDC NG  CSLCL +HKDHR
Sbjct:    25 GPEEEENRWPPWLKPLLKEQFFVHCKFHGDSHKSECNMYCLDCTNGPLCSLCLAHHKDHR 84

Query:    62 AIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCD 121
              IQIRRSSYHDVIRV+EIQK LDI G+QTYVINSA+VVFLNERPQPRPGKGVTNTC+VC 
Sbjct:    85 TIQIRRSSYHDVIRVNEIQKYLDIGGIQTYVINSAKVVFLNERPQPRPGKGVTNTCKVCY 144

Query:   122 RSLLD-SFRFCSLGCKIVGTSKNFQKRKNRLAMGXXXXXXXXXXIHGKLKNRDFSSNNNN 180
             RSL+D SFRFCSLGCKI GTS+ F+K +  L M             GK         N  
Sbjct:   145 RSLVDDSFRFCSLGCKIAGTSRGFEKGRENLLMETEDSSSSIAI--GK---------NIT 193

Query:   181 KMQSFSPSTPPPTAVSH-RISKRRKGIPHRAPMG 213
              +QSFSPSTPP T  S+ RI KRRKGIPHR+PMG
Sbjct:   194 NLQSFSPSTPPLTTSSNCRIVKRRKGIPHRSPMG 227

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037405 AT1G21000 [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
 Identities = 100/144 (69%), Positives = 119/144 (82%)

Query:     1 MGP-----DEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD 55
             MGP     +EED   PPWL P+LR S+FV C +H DS+K+ECN++CLDC   AFCS CL 
Sbjct:     1 MGPMIRTEEEEDYTSPPWLMPMLRGSYFVPCSIHVDSNKNECNLFCLDCAGNAFCSYCLV 60

Query:    56 YHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTN 115
              HKDHR +QIRRSSYH+V+RV+EIQK +DI+ VQTY+INSA++VFLNERPQPR GKGVTN
Sbjct:    61 KHKDHRVVQIRRSSYHNVVRVNEIQKFIDIACVQTYIINSAKIVFLNERPQPRIGKGVTN 120

Query:   116 TCEVCDRSLLDSFRFCSLGCKIVG 139
             TCE+C RSLLDSFRFCSLGCK+ G
Sbjct:   121 TCEICCRSLLDSFRFCSLGCKLGG 144

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011721 AT1G76590 [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 100/150 (66%), Positives = 121/150 (80%)

Query:     1 MGP----DEEDN---RWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLC 53
             MGP     EEDN     PPWL P+LR ++F+ C +H  S+KSECNM+CLDC + AFCS C
Sbjct:     1 MGPMMMRAEEDNYNLNPPPWLIPMLRANYFIPCSIHAASNKSECNMFCLDCSSEAFCSYC 60

Query:    54 LDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGV 113
             L  H++HR +QIRRSSYH+V+RV+EIQK +DIS VQTY+INSAR+VFLNERPQPR GKGV
Sbjct:    61 LLNHRNHRVLQIRRSSYHNVVRVNEIQKYIDISCVQTYIINSARIVFLNERPQPRIGKGV 120

Query:   114 TNTCEVCDRSLLDSFRFCSLGCKIVGTSKN 143
             TNTCE+C RSLLDSFRFCSLGCK+ G  ++
Sbjct:   121 TNTCEICCRSLLDSFRFCSLGCKLGGMKRD 150

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2178580 AT5G46710 [Arabidopsis thaliana (taxid:3702)]

 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 115/210 (54%), Positives = 140/210 (66%)

Query:     5 EEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQ 64
             E +N+WP WLKPLL + FF QCK H    ++EC MYCLDC N +FCSLCL  H++HR IQ
Sbjct:    22 EGENQWPIWLKPLLNQHFFAQCKFHGHLPRTECKMYCLDCTNDSFCSLCLSEHENHRTIQ 81

Query:    65 IRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSL 124
             IR SSYH+V +V EIQK LDIS +QTYVINS++V+FLNERPQ +PGKG TN C VC R L
Sbjct:    82 IRISSYHNVTKVDEIQKYLDISSIQTYVINSSKVLFLNERPQSKPGKGFTNACMVCYRGL 141

Query:   125 LDS-FRFCSLGCKIVGTSKNFQKRKNRLAMGXXXXXXXXXXIHGKLKNRDFSSNNNNKMQ 183
              ++ FRFCS+GCK+ GTS  FQKR                   G   N   + N N+ +Q
Sbjct:   142 AENCFRFCSIGCKVAGTSGVFQKRVKHTTNDSDNSNNSS----GVENNSSGAENGNSNLQ 197

Query:   184 SFSPSTP--PPTAVSHRISKRRKGIPHRAP 211
             S SP TP  PP ++  R+   RKGIPHRAP
Sbjct:   198 SLSPPTPQFPPRSLRKRL---RKGIPHRAP 224

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009879 AT1G43000 [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
 Identities = 101/214 (47%), Positives = 132/214 (61%)

Query:     4 DEEDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAI 63
             + +D   PPWL P+LR  +FV C +H  S KSECN++CLDC   AFCS CL +H+ HR I
Sbjct:     2 ENDDVMTPPWLTPMLRADYFVTCSIHSQSSKSECNLFCLDCSGNAFCSSCLAHHRTHRVI 61

Query:    64 QIRRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRS 123
             QIRRSSYH+V+RVSEIQK +DIS +QTYVINSA++ FLN RPQ R GK +  TC++C R+
Sbjct:    62 QIRRSSYHNVVRVSEIQKHIDISCIQTYVINSAKIFFLNARPQCRTGKSLNKTCQICSRN 121

Query:   124 LLDSFRFCSLGCKIVGTSKNFQKRKNRLAMGXXXXXXXX--XXIHGKLKNRDFSSNNNNK 181
             LLDSF FCSL CK+ G              G            I  +L +    + ++ +
Sbjct:   122 LLDSFLFCSLACKLEGVKNGEDPNLTLFHSGKSDDSSKIINTGICSRLIDGISIAVDDQR 181

Query:   182 MQSFSPSTPP-PTAVSHR---ISKRRKGIPHRAP 211
              ++    +P  P+  SHR   +  RRKGIP RAP
Sbjct:   182 SETAGVLSPETPSIESHRNYPMKSRRKGIPQRAP 215

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057867 AT2G27930 [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
 Identities = 85/151 (56%), Positives = 105/151 (69%)

Query:    11 PPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQIRRSS 69
             P WL+ LLR +FF  C  H ++ ++ECNM+CL C N AFC  C   +H DH  +QIRRSS
Sbjct:     4 PKWLEGLLRTNFFSICPRHRETPRNECNMFCLSCQNAAFCFYCRSSFHIDHPVLQIRRSS 63

Query:    70 YHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGK-GVTNT--------CEVC 120
             YHDV+RVSEI+  LDI GVQTYVINSARV+FLNERPQP+    G  ++        CE C
Sbjct:    64 YHDVVRVSEIENALDIRGVQTYVINSARVLFLNERPQPKNSSHGAASSTPKTMSYFCETC 123

Query:   121 DRSLLDSFRFCSLGCKIVGTSKNFQKRKNRL 151
              R+LLD FRFCSLGCK+ G  KN ++ + RL
Sbjct:   124 CRTLLDPFRFCSLGCKVEGMRKNKEEEEERL 154

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023224 AT2G12646 "AT2G12646" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
 Identities = 64/135 (47%), Positives = 86/135 (63%)

Query:    11 PPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSY 70
             P WL  L  E FFV C  H  + K+E N+ CLDC   + C  C+  H+ HR +Q+RR  Y
Sbjct:     6 PAWLDALYAEKFFVGCPYHETAKKNERNVCCLDCCT-SLCPHCVPSHRFHRLLQVRRYVY 64

Query:    71 HDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRF 130
             HDV+R+ ++QK++D S VQ Y INSA+VVF+ +RPQ R  KG  N C  CDRSL + +  
Sbjct:    65 HDVVRLEDLQKLIDCSNVQAYTINSAKVVFIKKRPQNRQFKGAGNYCTSCDRSLQEPYIH 124

Query:   131 CSLGCKIVGTSKNFQ 145
             CSLGCK+    K ++
Sbjct:   125 CSLGCKVDFVMKRYR 139

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015761 AT1G31040 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
 Identities = 60/127 (47%), Positives = 82/127 (64%)

Query:    11 PPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQIRRSSY 70
             P WL+ L+ E+FF  C +H    KSE N++CL C     C  CL  H+ H  +Q+RR  Y
Sbjct:    19 PAWLEGLMAETFFSSCGIHETRRKSEKNVFCLLCCLSV-CPHCLPSHRSHPLLQVRRYVY 77

Query:    71 HDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRF 130
             HDV+R+S+++K++D S VQ Y IN A+V+FLN+R Q R  K  +N C  CDR L + F F
Sbjct:    78 HDVVRLSDLEKLIDCSYVQPYTINGAKVIFLNQRQQSR-AKVSSNVCFTCDRILQEPFHF 136

Query:   131 CSLGCKI 137
             CSL CK+
Sbjct:   137 CSLSCKV 143

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101881 AT3G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 62/132 (46%), Positives = 80/132 (60%)

Query:     6 EDNRWPPWLKPLLRESFFVQCKLHPDSHKSECNMYCLDCMNGAFCSLCLDYHKDHRAIQI 65
             E   +P WL+ LL++ FF  C  H D  K+E N+ C+DC     C  CL  H  HR +QI
Sbjct:     2 ESGEFPAWLEVLLKDKFFNACLDHEDDKKNEKNILCIDCCL-TICPHCLSSHTSHRLLQI 60

Query:    66 RRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLL 125
             RR  Y DV+RV +  K++D S +Q Y  NS++VVF+NERPQ R  +G  N C  CDRSL 
Sbjct:    61 RRYVYRDVLRVEDGSKLMDCSLIQPYTTNSSKVVFINERPQSRQFRGSGNICITCDRSLQ 120

Query:   126 DSFRFCSLGCKI 137
               + FC L CKI
Sbjct:   121 SPYLFCCLSCKI 132

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00030654 hypothetical protein (221 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
pfam04640	72	pfam04640, PLATZ, PLATZ transcription factor	5e-46

>gnl|CDD|191051 pfam04640, PLATZ, PLATZ transcription factor

 Score =  146 bits (370), Expect = 5e-46
 Identities = 60/72 (83%), Positives = 66/72 (91%)

Query: 66  RRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLL 125
           RRSSYHDV+RVS+IQK++DISGVQTYVINSA+VVFLNERPQ RPGKG  N CE CDRSLL
Sbjct: 1   RRSSYHDVVRVSDIQKLIDISGVQTYVINSAKVVFLNERPQSRPGKGSGNICETCDRSLL 60

Query: 126 DSFRFCSLGCKI 137
           D FRFCSLGCK+
Sbjct: 61  DPFRFCSLGCKV 72

Plant AT-rich sequence and zinc-binding proteins (PLATZ) are zinc dependant DNA binding proteins. They bind to AT rich sequences and functions in transcriptional repression. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PF04640	72	PLATZ: PLATZ transcription factor; InterPro: IPR00	100.0
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.53
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	95.04
smart00336	42	BBOX B-Box-type zinc finger.	94.18
PRK01343	57	zinc-binding protein; Provisional	87.5
PF12855	43	Ecl1: Life-span regulatory factor; InterPro: IPR02	86.95
PF03884	57	DUF329: Domain of unknown function (DUF329); Inter	86.34
PRK00418	62	DNA gyrase inhibitor; Reviewed	84.89
COG3024	65	Uncharacterized protein conserved in bacteria [Fun	83.35

>PF04640 PLATZ: PLATZ transcription factor; InterPro: IPR006734 This family includes a conserved region in several uncharacterised plant proteins

Probab=100.00  E-value=4.4e-40  Score=244.18  Aligned_cols=72  Identities=72%  Similarity=1.223  Sum_probs=71.1

Q ss_pred             EeccccceeeechhhhhhcccceeeEEECCeeEEEeeCCCCCCCCCCCCCcccccccccCCCCeeeeccccc
Q 027730           66 RRSSYHDVIRVSEIQKVLDISGVQTYVINSARVVFLNERPQPRPGKGVTNTCEVCDRSLLDSFRFCSLGCKI  137 (219)
Q Consensus        66 RRssY~dVVRv~dIqkl~D~S~IQtYvINsakVVfLn~RPq~r~~kg~~~~Ce~C~R~L~d~~rFCSL~CKv  137 (219)
                      |||||||||||+|||||||||+||||+|||+||||||+|||+++++++++.|++|+|+|+|+|+||||+|||
T Consensus         1 Rr~sY~dVVrv~di~kl~D~s~IQtY~iNs~kVVfLn~Rpq~~~~~~~~~~C~~C~R~L~d~~~fCSl~CKv   72 (72)
T PF04640_consen    1 RRYSYHDVVRVSDIQKLLDCSGIQTYVINSAKVVFLNPRPQSRPSKGSGNICETCHRSLQDPYRFCSLSCKV   72 (72)
T ss_pred             CcccccceEEHHHhHhhccccccEEEEeCCceEEEEccCCcCCCCCCCCCccCCCCCCCCCCCeEEeeeEEC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999997

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.53  E-value=0.00078  Score=43.77  Aligned_cols=37  Identities=35%  Similarity=0.859  Sum_probs=29.6

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc-CCCCCceeEE
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQI   65 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hr~lQI   65 (219)
                      .|..|..   .+.++||.+|. ..+|..|.. .|++|.++.|
T Consensus         5 ~C~~H~~---~~~~~~C~~C~-~~~C~~C~~~~H~~H~~~~i   42 (42)
T PF00643_consen    5 KCPEHPE---EPLSLFCEDCN-EPLCSECTVSGHKGHKIVPI   42 (42)
T ss_dssp             B-SSTTT---SBEEEEETTTT-EEEEHHHHHTSTTTSEEEEC
T ss_pred             cCccCCc---cceEEEecCCC-CccCccCCCCCCCCCEEeEC
Confidence            5888874   34899999998 899999977 5999987754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=95.04  E-value=0.016  Score=36.42  Aligned_cols=36  Identities=22%  Similarity=0.509  Sum_probs=27.8

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc-CCCCCceeE
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQ   64 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hr~lQ   64 (219)
                      .|..|..   +...+||.+|. ..+|..|.. .|++|.++-
T Consensus         2 ~C~~H~~---~~~~~fC~~~~-~~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021           2 LCDEHGE---EPLSLFCETDR-ALLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             CCCccCC---cceEEEeCccC-hhhhhhcChhhcCCCCEee
Confidence            4777853   24589999997 899999965 688887654

>smart00336 BBOX B-Box-type zinc finger

Probab=94.18  E-value=0.041  Score=34.96  Aligned_cols=35  Identities=26%  Similarity=0.803  Sum_probs=27.6

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc-CCCCCcee
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAI   63 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hr~l   63 (219)
                      .|..|..   ....+||.+|. ..+|..|.. .|++|.++
T Consensus         5 ~C~~h~~---~~~~~~C~~c~-~~iC~~C~~~~H~~H~~~   40 (42)
T smart00336        5 KCDSHGD---EPAEFFCEECG-ALLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             cCCCCCC---CceEEECCCCC-cccccccChhhcCCCcee
Confidence            4777763   24589999998 899999976 58888765

>PRK01343 zinc-binding protein; Provisional

Probab=87.50  E-value=0.25  Score=35.68  Aligned_cols=29  Identities=24%  Similarity=0.607  Sum_probs=23.0

Q ss_pred             CCcccccccccCCCC-eeeeccccccccch
Q 027730          114 TNTCEVCDRSLLDSF-RFCSLGCKIVGTSK  142 (219)
Q Consensus       114 ~~~Ce~C~R~L~d~~-rFCSL~CKv~~~~~  142 (219)
                      ...|-+|++.....+ -|||-.||+.+..+
T Consensus         9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~   38 (57)
T PRK01343          9 TRPCPECGKPSTREAYPFCSERCRDIDLNR   38 (57)
T ss_pred             CCcCCCCCCcCcCCCCcccCHHHhhhhHHH
Confidence            456999999887655 59999999866544

>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]

Probab=86.95  E-value=0.16  Score=34.63  Aligned_cols=29  Identities=31%  Similarity=0.747  Sum_probs=24.1

Q ss_pred             CCccccccccc---CCCCeeeeccccccccch
Q 027730          114 TNTCEVCDRSL---LDSFRFCSLGCKIVGTSK  142 (219)
Q Consensus       114 ~~~Ce~C~R~L---~d~~rFCSL~CKv~~~~~  142 (219)
                      .+.|.+|+|-+   .+...|||-.|++.+...
T Consensus         6 ~~yC~~Cdk~~~~~~~~~lYCSe~Cr~~D~~~   37 (43)
T PF12855_consen    6 NDYCIVCDKQIDPPDDGSLYCSEECRLKDQEK   37 (43)
T ss_pred             hhHHHHhhccccCCCCCccccCHHHHhHhhhc
Confidence            46799999999   678999999999765443

Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.

>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc

Probab=86.34  E-value=0.095  Score=37.76  Aligned_cols=29  Identities=34%  Similarity=0.856  Sum_probs=17.5

Q ss_pred             CCcccccccccCC----CCe-eeeccccccccch
Q 027730          114 TNTCEVCDRSLLD----SFR-FCSLGCKIVGTSK  142 (219)
Q Consensus       114 ~~~Ce~C~R~L~d----~~r-FCSL~CKv~~~~~  142 (219)
                      +..|-+|++...-    +|+ |||-.||+.+..+
T Consensus         2 ~v~CP~C~k~~~~~~~n~~rPFCS~RCk~iDLg~   35 (57)
T PF03884_consen    2 TVKCPICGKPVEWSPENPFRPFCSERCKLIDLGR   35 (57)
T ss_dssp             EEE-TTT--EEE-SSSSS--SSSSHHHHHHHHS-
T ss_pred             cccCCCCCCeecccCCCCcCCcccHhhcccCHHH
Confidence            3469999998875    676 9999999865543

YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.

>PRK00418 DNA gyrase inhibitor; Reviewed

Probab=84.89  E-value=0.36  Score=35.43  Aligned_cols=29  Identities=31%  Similarity=0.812  Sum_probs=22.4

Q ss_pred             CCcccccccccC---C-CCe-eeeccccccccch
Q 027730          114 TNTCEVCDRSLL---D-SFR-FCSLGCKIVGTSK  142 (219)
Q Consensus       114 ~~~Ce~C~R~L~---d-~~r-FCSL~CKv~~~~~  142 (219)
                      .-.|-+|++.+.   + +|+ |||-.||+....+
T Consensus         6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~   39 (62)
T PRK00418          6 TVNCPTCGKPVEWGEISPFRPFCSKRCQLIDLGE   39 (62)
T ss_pred             cccCCCCCCcccccCCCCcCCcccHHHHhhhHHH
Confidence            457999999874   3 575 9999999876554

>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.35  E-value=0.44  Score=35.35  Aligned_cols=29  Identities=34%  Similarity=0.864  Sum_probs=22.8

Q ss_pred             CCcccccccccCC----CCe-eeeccccccccch
Q 027730          114 TNTCEVCDRSLLD----SFR-FCSLGCKIVGTSK  142 (219)
Q Consensus       114 ~~~Ce~C~R~L~d----~~r-FCSL~CKv~~~~~  142 (219)
                      +-.|-+|++...-    +|| |||-.||+-...+
T Consensus         7 ~v~CP~Cgkpv~w~~~s~frPFCSkRCklIDLg~   40 (65)
T COG3024           7 TVPCPTCGKPVVWGEESPFRPFCSKRCKLIDLGE   40 (65)
T ss_pred             cccCCCCCCcccccccCCcCcchhHhhhhcchhh
Confidence            3459999998864    666 9999999876554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 32/123 (26%)

Query: 32  SHKSECNMYCLDCMNGAF---CSLCLDYHKDHRAIQIRRSSYHDVIRVSEIQKVLDISGV 88
           S+K +C M         F      C   +     +++ +   + +          D S  
Sbjct: 173 SYKVQCKMD-----FKIFWLNLKNC---NSPETVLEMLQKLLYQI--DPNWTSRSDHSSN 222

Query: 89  QTYVINSARVV---FLNERPQPRPGKGVTNTC-----EVCDRSLLDSFRFCSLGCKIVGT 140
               I+S +      L  +P           C      V +    ++F   +L CKI+ T
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYEN--------CLLVLLNVQNAKAWNAF---NLSCKILLT 271

Query: 141 SKN 143
           ++ 
Sbjct: 272 TRF 274

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	94.99
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	94.92
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	94.68
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	94.27
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	93.75
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	92.09
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	91.94
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	90.86
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	90.05
2w0t_A	43	Lethal(3)malignant brain tumor-like 2 protein; zin	88.61
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	88.61
2das_A	62	Zinc finger MYM-type protein 5; trash domain, stru	84.37

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=94.99  E-value=0.0092  Score=38.84  Aligned_cols=39  Identities=36%  Similarity=0.718  Sum_probs=30.6

Q ss_pred             cccCCCCCCCCCCCcceecccCCCCcCCcccc-c-CCCCCceeEE
Q 027730           23 FVQCKLHPDSHKSECNMYCLDCMNGAFCSLCL-D-YHKDHRAIQI   65 (219)
Q Consensus        23 F~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~Hr~lQI   65 (219)
                      ...|..|..   ...++||.+|. ..+|..|. . .|++|+++.|
T Consensus         6 ~~~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A            6 HPMCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             SCBCSSSTT---SBCCEEETTTT-EEECHHHHHHSTTTTSCEEEC
T ss_pred             CCcCCCCCC---ccccEEcCCCC-eeEcccccCCCcCCCCcEEeC
Confidence            356998873   13679999997 89999995 3 8999987654

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=94.92  E-value=0.011  Score=40.32  Aligned_cols=36  Identities=39%  Similarity=0.784  Sum_probs=28.6

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQ   64 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQ   64 (219)
                      .|..|..   ...++||.+|. ..+|..|..  .|++|+++-
T Consensus        10 ~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~   47 (64)
T 2d8u_A           10 MCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAP   47 (64)
T ss_dssp             CCSSCTT---CCCCSEESSSC-CCCCSHHHHSSSTTSSCEEC
T ss_pred             cCcCcCC---CccceEcCcCC-ceeCccccCCCcCCCCCeeC
Confidence            5999954   24689999997 899999953  899987654

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=94.68  E-value=0.01  Score=38.74  Aligned_cols=36  Identities=28%  Similarity=0.565  Sum_probs=28.2

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc-CCCCCceeE
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQ   64 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hr~lQ   64 (219)
                      .|..|..   ...++||.+|. ..+|..|.. .|++|+++-
T Consensus         8 ~C~~H~~---e~l~lfC~~~~-~~iC~~C~~~~H~~H~~~~   44 (50)
T 2yvr_A            8 YCNVHKH---EPLVLFCESCD-TLTCRDCQLNAHKDHQYQF   44 (50)
T ss_dssp             BCSSSTT---CBCCEEETTTT-EEECHHHHHTTTTTCCEEE
T ss_pred             cCcCCCC---CCEEEEeCCCC-EEEecccCCCcCCCCceec
Confidence            4999954   24789999997 889999954 788887654

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=94.27  E-value=0.026  Score=35.50  Aligned_cols=35  Identities=29%  Similarity=0.655  Sum_probs=28.4

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQ   64 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQ   64 (219)
                      .|..|..    ...+||.+|. ..+|..|..  .|++|+++.
T Consensus         5 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~   41 (42)
T 1fre_A            5 KCSEHDE----RLKLYCKDDG-TLSCVICRDSLKHASHNFLP   41 (42)
T ss_dssp             CCCSSCS----SCCCCCCSSS-SSSCCTTSSCSSCTTCCCCC
T ss_pred             cchhhCC----eeeEEeCCCC-eEEeccCCCCCCCCCCcEec
Confidence            5888862    4689999997 889999964  799998753

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=93.75  E-value=0.03  Score=36.96  Aligned_cols=36  Identities=22%  Similarity=0.659  Sum_probs=29.2

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeEE
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQI   65 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQI   65 (219)
                      .|..|..    ...+||.+|. ..+|..|..  .|++|+++-|
T Consensus        10 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l   47 (53)
T 2did_A           10 LCPQHHE----ALSLFCYEDQ-EAVCLICAISHTHRAHTVVPL   47 (53)
T ss_dssp             BCTTTCC----BCCEEESSSC-SEECHHHHTSSTTTTSCEEEC
T ss_pred             cChhhCC----eeeEEeCCCC-eEEeccccCCCCCCCCcEeeH
Confidence            5999962    4689999997 899999964  8999987654

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.09  E-value=0.071  Score=36.33  Aligned_cols=37  Identities=22%  Similarity=0.555  Sum_probs=30.0

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeEEE
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIR   66 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQIR   66 (219)
                      .|..|..    ...+||.+|. ..+|..|..  .|++|+++.|-
T Consensus        16 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~s~eH~~H~~~~l~   54 (59)
T 2yrg_A           16 HCARHGE----KLLLFCQEDG-KVICWLCERSQEHRGHHTFPTS   54 (59)
T ss_dssp             BCTTTCC----BCCEEETTTC-SEECHHHHTSTTTTTCCEEECC
T ss_pred             cChhhCc----eeeeecCCCC-cEEecccCCCCcCCCCcEeeHH
Confidence            5999963    5689999997 889999964  89999877653

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=91.94  E-value=0.055  Score=37.83  Aligned_cols=35  Identities=26%  Similarity=0.710  Sum_probs=27.8

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc-CCCCCceeE
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQ   64 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hr~lQ   64 (219)
                      .|..|..    ..++||.+|. ..+|..|.. .|++|+++-
T Consensus        20 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~H~~H~~~~   55 (72)
T 2csv_A           20 KCPVHGK----TMELFCQTDQ-TCICYLCMFQEHKNHSTVT   55 (72)
T ss_dssp             BCTTTCC----BCCEEESSSC-CEECHHHHHTTTSSSCEEE
T ss_pred             cCcccCC----ceEEEeCCCC-eEEccccCCCCCCCCCEec
Confidence            6999942    5689999997 889999965 788876554

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=90.86  E-value=0.067  Score=38.13  Aligned_cols=39  Identities=31%  Similarity=0.686  Sum_probs=30.1

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeEEEe
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQIRR   67 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQIRR   67 (219)
                      .|..|..   ...++||.+|. ..+|..|..  .|++|+++-|--
T Consensus        20 ~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l~e   60 (84)
T 2dja_A           20 TCLDHEN---EKVNMYCVSDD-QLICALCKLVGRHRDHQVASLND   60 (84)
T ss_dssp             CCSSCSS---SCCCEEETTTT-EEECHHHHHTSTTTTCCBCCCCS
T ss_pred             cCcCcCC---ccccEEcCCCC-ceEcccCcCCCCCCCCCccCHHH
Confidence            5999953   13689999997 899999954  899998765443

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.05  E-value=0.042  Score=37.29  Aligned_cols=35  Identities=26%  Similarity=0.639  Sum_probs=28.7

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAIQ   64 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~lQ   64 (219)
                      .|..|..    ...+||.+|. ..+|..|..  .|++|+++.
T Consensus        20 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           20 ICPKHQE----ALKLFCEVDE-EAICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCTTTCC----BCCEEETTTT-EEECHHHHHSHHHHSSCEEC
T ss_pred             cChhhCc----eeeEEcCCCC-cEEecccCCCCCCCCCcEec
Confidence            4999952    5789999997 889999964  799998764

>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}

Probab=88.61  E-value=0.084  Score=35.25  Aligned_cols=25  Identities=32%  Similarity=0.797  Sum_probs=18.4

Q ss_pred             CCCCcccccccc-cCC-----CCeeeecccc
Q 027730          112 GVTNTCEVCDRS-LLD-----SFRFCSLGCK  136 (219)
Q Consensus       112 g~~~~Ce~C~R~-L~d-----~~rFCSL~CK  136 (219)
                      +....||.|++. +..     +-||||++|-
T Consensus         4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca   34 (43)
T 2w0t_A            4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS   34 (43)
T ss_dssp             CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred             CceehhhhhcCcchhhhhccCCcceechhhh
Confidence            345689999984 333     4489999995

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=88.61  E-value=0.13  Score=37.44  Aligned_cols=37  Identities=35%  Similarity=0.767  Sum_probs=29.2

Q ss_pred             ccCCCCCCCCCCCcceecccCCCCcCCcccc--cCCCCCceeE
Q 027730           24 VQCKLHPDSHKSECNMYCLDCMNGAFCSLCL--DYHKDHRAIQ   64 (219)
Q Consensus        24 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~Hr~lQ   64 (219)
                      ..|..|..   ...++||.+|. ..+|..|.  ..|++|+++-
T Consensus        60 ~~C~~H~~---e~l~~fC~~~~-~~iC~~C~~~~~H~~H~~~~   98 (101)
T 2jun_A           60 LMCLEHED---EKVNMYCVTDD-QLICALCKLVGRHRDHQVAA   98 (101)
T ss_dssp             CCCSSCSS---SCCCEEETTTT-EEECHHHHHHTTTSSSCBCC
T ss_pred             CcCcCcCC---CcceEECCCCC-CccchhcCCCCCcCCCCeec
Confidence            36998863   23689999997 89999996  4899998654

>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17

Probab=84.37  E-value=0.64  Score=33.14  Aligned_cols=31  Identities=29%  Similarity=0.553  Sum_probs=24.9

Q ss_pred             CCCCCCCCCcccccccccCC----------CCeeeeccccc
Q 027730          107 PRPGKGVTNTCEVCDRSLLD----------SFRFCSLGCKI  137 (219)
Q Consensus       107 ~r~~kg~~~~Ce~C~R~L~d----------~~rFCSL~CKv  137 (219)
                      .++.+....+|+.|.+.|+.          +-.|||..|-.
T Consensus        13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~   53 (62)
T 2das_A           13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS   53 (62)
T ss_dssp             CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred             cCCCCccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence            45666788899999999983          45799999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	96.13
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	95.93
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	95.91
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.31
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	95.27
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	95.08
d1lv3a_	65	Hypothetical zinc finger protein YacG {Escherichia	80.84

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=96.13  E-value=0.0019  Score=40.17  Aligned_cols=34  Identities=29%  Similarity=0.677  Sum_probs=28.3

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCcee
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAI   63 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~l   63 (219)
                      .|..|..    ..++||.+|. ..+|..|..  .|++|.++
T Consensus         2 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           2 KCSEHDE----RLKLYCKDDG-TLSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             CCCSSCS----SCCCCCCSSS-SSSCCTTSSCSSCTTCCCC
T ss_pred             CCcccCc----ceeEEcccCC-cEeeccCcCCCCcCCCcEe
Confidence            6899953    5789999997 899999954  79999875

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0011  Score=44.20  Aligned_cols=36  Identities=25%  Similarity=0.719  Sum_probs=29.3

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc-CCCCCceeEE
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD-YHKDHRAIQI   65 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~Hr~lQI   65 (219)
                      .|..|..    ...+||.+|. ..+|..|+. .|++|.++.|
T Consensus        13 ~C~~H~e----~l~lyC~~c~-~~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          13 KCPVHGK----TMELFCQTDQ-TCICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCTTTCC----BCCEEESSSC-CEECHHHHHTTTSSSCEEEH
T ss_pred             chhhhCC----ccceECCCCC-ceECcccCcccCCCCCeeCH
Confidence            6999942    5789999998 899999976 7888876644

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0015  Score=42.46  Aligned_cols=37  Identities=38%  Similarity=0.774  Sum_probs=28.7

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCcccc-c-CCCCCceeEE
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL-D-YHKDHRAIQI   65 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~Hr~lQI   65 (219)
                      .|..|.+   ...++||.+|. .++|..|. . .|++|.+.-|
T Consensus         3 ~C~~H~~---e~l~~yC~~c~-~~iC~~C~~~~~Hk~H~v~~l   41 (51)
T d2d8ua1           3 MCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAPL   41 (51)
T ss_dssp             CCSSCTT---CCCCSEESSSC-CCCCSHHHHSSSTTSSCEECT
T ss_pred             CCcccCc---CcceEEcCCCC-ceECccccCcCCcCcCcCcCH
Confidence            5888874   23689999997 89999994 3 7999875443

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0021  Score=43.59  Aligned_cols=39  Identities=31%  Similarity=0.695  Sum_probs=30.3

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCcccc-c-CCCCCceeEEEe
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL-D-YHKDHRAIQIRR   67 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~Hr~lQIRR   67 (219)
                      .|..|.+.   ..++||.+|. ..+|..|. . .|++|.+.-|..
T Consensus        13 ~C~~H~~e---~l~~fC~~C~-~~iC~~C~~~~~Hk~H~~~~i~~   53 (71)
T d2djaa1          13 TCLDHENE---KVNMYCVSDD-QLICALCKLVGRHRDHQVASLND   53 (71)
T ss_dssp             CCSSCSSS---CCCEEETTTT-EEECHHHHHTSTTTTCCBCCCCS
T ss_pred             cCcccCCc---cceeEcCCCC-ceeccccccCCCCCCCcCcCHHH
Confidence            49999741   2589999997 89999994 3 699998765543

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0013  Score=42.25  Aligned_cols=35  Identities=37%  Similarity=0.766  Sum_probs=28.1

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCcccc-c-CCCCCcee
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCL-D-YHKDHRAI   63 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~Hr~l   63 (219)
                      .|+.|.+   .+-++||.+|. .++|..|. . .|++|.+.
T Consensus         7 ~C~~H~~---e~l~~yC~~C~-~~iC~~C~~~~~H~~H~~~   43 (47)
T d2dq5a1           7 MCLEHED---EKVNMYCVTDD-QLICALCKLVGRHRDHQVA   43 (47)
T ss_dssp             BCSSCTT---SBEEEEETTTT-EEEEHHHHHTSSTTSSCCC
T ss_pred             cchhhCC---CcceEEcCCCC-ccCCccCcCcCCcCCCeEe
Confidence            4898975   24689999998 89999994 4 79999764

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0051  Score=38.23  Aligned_cols=34  Identities=24%  Similarity=0.672  Sum_probs=28.4

Q ss_pred             cCCCCCCCCCCCcceecccCCCCcCCccccc--CCCCCcee
Q 027730           25 QCKLHPDSHKSECNMYCLDCMNGAFCSLCLD--YHKDHRAI   63 (219)
Q Consensus        25 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hr~l   63 (219)
                      .|..|..    ..++||.+|. ..+|..|..  .|++|+++
T Consensus         3 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~v~   38 (40)
T d2dida1           3 LCPQHHE----ALSLFCYEDQ-EAVCLICAISHTHRAHTVV   38 (40)
T ss_dssp             BCTTTCC----BCCEEESSSC-SEECHHHHTSSTTTTSCEE
T ss_pred             cchhhCc----cceEEcccCC-cEeeccCcCCCCcCCCcEe
Confidence            5888853    5789999997 899999954  79999876

>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Hypothetical zinc finger protein YacG
domain: Hypothetical zinc finger protein YacG
species: Escherichia coli [TaxId: 562]

Probab=80.84  E-value=0.12  Score=35.27  Aligned_cols=30  Identities=30%  Similarity=0.930  Sum_probs=21.9

Q ss_pred             CCCcccccccccC----CCCe-eeeccccccccch
Q 027730          113 VTNTCEVCDRSLL----DSFR-FCSLGCKIVGTSK  142 (219)
Q Consensus       113 ~~~~Ce~C~R~L~----d~~r-FCSL~CKv~~~~~  142 (219)
                      .+-.|-+|++...    ..|+ |||-.||+....+
T Consensus         5 ~~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~   39 (65)
T d1lv3a_           5 ITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGE   39 (65)
T ss_dssp             CEEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSC
T ss_pred             ceeeCCCCCCccccCCCCCcCCchhHhhhhccHHH
Confidence            3457999999763    3565 9999999765443