Citrus Sinensis ID: 027731

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHccccEEEEEcccccHHHHHHcccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccEEEEEEcccHHHHcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEHEHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHccHEEEEEccccccEcccccccccccEcccccHHHHHHcccccccHHHHHHHHHccccEEEEEccccccHHHEEcccccEEEEcccccEEEEcccc
Coil and Loop (DISEMBL)
MAIAREVASVTRLGIEVAIVVGGgnifrgasaagnsgldrssaDYIGMLATVMNAIFLQAtmesigiptRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFaagtgnpffttDTAAALRCAEINAEVVLKAtnvdgvyddnprrnpnarllDTLTYQevtskdlsvMDMTAITlcqennipvvvfnlnqpgniakaiqgervgtliggtwnstvsktlg
Flexible Loop (DISEMBL)
maiarevasvtrLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIfaagtgnpfFTTDTAAALRCAEINAEVVlkatnvdgvyddnprrnpnarlldtlTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAiqgervgtliggtwnstvsktlg
Low Complexity Region (SEG)
MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
Disordered region (IsUnstruct)
******VASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN****PNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN********
Disordered Region (DISOPRED)
*AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG************
Disordered Region (DISEMBL)
********SVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
Disordered Region (DISPRO)
MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q2JS42	254	Uridylate kinase OS=Synec	yes	no	0.949	0.818	0.668	2e-79
Q10Y48	244	Uridylate kinase OS=Trich	yes	no	0.968	0.868	0.647	2e-79
Q2JJE2	253	Uridylate kinase OS=Synec	yes	no	0.940	0.814	0.669	2e-78
P74457	260	Uridylate kinase OS=Synec	N/A	no	0.931	0.784	0.668	1e-77
Q3MFI4	242	Uridylate kinase OS=Anaba	yes	no	0.949	0.859	0.645	2e-76
Q8YXK5	242	Uridylate kinase OS=Nosto	yes	no	0.949	0.859	0.645	3e-76
Q0I8L5	235	Uridylate kinase OS=Synec	yes	no	0.931	0.868	0.668	2e-75
Q3AV98	237	Uridylate kinase OS=Synec	yes	no	0.936	0.864	0.655	2e-75
Q7V6C2	237	Uridylate kinase OS=Proch	yes	no	0.931	0.860	0.648	9e-75
Q5N3B6	240	Uridylate kinase OS=Synec	yes	no	0.940	0.858	0.647	9e-75

>sp|Q2JS42|PYRH_SYNJA Uridylate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pyrH PE=3 SV=1

 Score =  295 bits (754), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/208 (66%), Positives = 168/208 (80%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
           +IA EVASV R G++VAIVVGGGNI+RG   A   G+D++SADY+GMLATV+NA+ LQ  
Sbjct: 30  SIASEVASVVRAGVQVAIVVGGGNIWRGRKEAAAQGMDQASADYVGMLATVINALTLQDA 89

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
           +E  GIPTRVQTA  M EVAEPYIRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR A
Sbjct: 90  IERAGIPTRVQTAIAMQEVAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAA 149

Query: 122 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIP 181
           EI+AEV+ KAT VDGVYD +P+ +P AR  D L+YQ+V ++DL VMD TAI LC+EN +P
Sbjct: 150 EIDAEVIFKATKVDGVYDADPKTHPQARRYDVLSYQDVLTRDLRVMDSTAIALCKENQLP 209

Query: 182 VVVFNLNQPGNIAKAIQGERVGTLIGGT 209
           +VVF+L  PGNI + +QGE +GT IG T
Sbjct: 210 IVVFDLTTPGNIYRVVQGEPIGTWIGQT 237

Catalyzes the reversible phosphorylation of UMP to UDP.
Synechococcus sp. (strain JA-3-3Ab) (taxid: 321327)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 2EC: 2

>sp|Q10Y48|PYRH_TRIEI Uridylate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pyrH PE=3 SV=1

 Score =  295 bits (754), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/213 (64%), Positives = 171/213 (80%), Gaps = 1/213 (0%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           IA+EVA V   GI++AIVVGGGNIFRG  AA + G+DR++ADY+GM+ATVMNAI LQ  +
Sbjct: 33  IAQEVAEVAATGIQIAIVVGGGNIFRGVKAA-SKGMDRATADYVGMIATVMNAITLQDAL 91

Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
           E +G+PTRVQTA  M E+AEPYIRRRA+RHLEKGRVV+F AG+GNPFFTTDT AALR AE
Sbjct: 92  EQVGVPTRVQTAIAMQELAEPYIRRRAIRHLEKGRVVVFGAGSGNPFFTTDTTAALRAAE 151

Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I AEV+ KAT VDGVYD +P +N  A+  ++L+Y EV + DL VMD TAI LC+ENNIP+
Sbjct: 152 IEAEVIFKATKVDGVYDSDPHKNQEAKRYESLSYGEVLTLDLRVMDSTAIALCKENNIPI 211

Query: 183 VVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVS 215
           +VFNL+  GNI KA+ GE++GT++GG   S  S
Sbjct: 212 IVFNLSVSGNICKAVMGEKIGTIVGGFHESKRS 244

Catalyzes the reversible phosphorylation of UMP to UDP.

Trichodesmium erythraeum (strain IMS101) (taxid: 203124)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q2JJE2|PYRH_SYNJB Uridylate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=pyrH PE=3 SV=1

 Score =  291 bits (746), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/206 (66%), Positives = 167/206 (81%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
           +IA EVASV R G++VAIVVGGGNI+RG   A   G+D++SADY+GMLATV+NA+ LQ  
Sbjct: 30  SIAGEVASVVRAGVQVAIVVGGGNIWRGRKEAAAQGMDQASADYVGMLATVINALTLQDA 89

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
           +E  GIPTRVQTA  M EVAEPYIRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR A
Sbjct: 90  IERAGIPTRVQTAIAMQEVAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAA 149

Query: 122 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIP 181
           EI+AEV+ KAT VDGVYD +P+ +P AR  D L+YQ+V ++DL VMD TAI LC+EN +P
Sbjct: 150 EIDAEVIFKATKVDGVYDADPKTHPQARRYDVLSYQDVLNRDLRVMDSTAIALCKENQLP 209

Query: 182 VVVFNLNQPGNIAKAIQGERVGTLIG 207
           +VVF+L  PGNI + +QGE +GT IG
Sbjct: 210 IVVFDLTTPGNIYRVVQGEPIGTWIG 235

Catalyzes the reversible phosphorylation of UMP to UDP.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|P74457|PYRH_SYNY3 Uridylate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=pyrH PE=3 SV=1

 Score =  289 bits (739), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 137/205 (66%), Positives = 168/205 (81%), Gaps = 1/205 (0%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           IA+E+  V + G+++AIVVGGGNIFRG  A+  +G+DR++ADYIGM+ATVMNA+ LQ  +
Sbjct: 51  IAQEIKDVLQAGVQLAIVVGGGNIFRGVKASA-AGMDRATADYIGMIATVMNAMTLQDAL 109

Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
           E + IPTRV TA  M EVAEPYIRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR AE
Sbjct: 110 EQMDIPTRVLTAIAMQEVAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAE 169

Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I+AEVV KAT VDGVYD +P+ NPNAR   TLTY  V ++DL VMD TAI LC++NNIP+
Sbjct: 170 IDAEVVFKATKVDGVYDSDPKTNPNARRFTTLTYSHVLAEDLKVMDSTAIALCKDNNIPI 229

Query: 183 VVFNLNQPGNIAKAIQGERVGTLIG 207
           ++F+L  PGNI +AI+GE VGTL+G
Sbjct: 230 MIFDLGVPGNIVRAIKGEAVGTLVG 254

Catalyzes the reversible phosphorylation of UMP to UDP.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q3MFI4|PYRH_ANAVT Uridylate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pyrH PE=3 SV=1

 Score =  285 bits (728), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 135/209 (64%), Positives = 170/209 (81%), Gaps = 1/209 (0%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           IA+E+A V   G+++AIVVGGGNIFRG  AA ++G+DR++ADYIGM+ATVMNA+ LQ ++
Sbjct: 33  IAQEIAEVIATGVQIAIVVGGGNIFRGVKAA-SAGMDRATADYIGMIATVMNAMTLQDSL 91

Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
           E IG+ TRVQTA  M E+AEPYIRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR AE
Sbjct: 92  ERIGVQTRVQTAIAMQELAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAE 151

Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I+AEV+ KAT VDGVYD +P   PNA+  ++LTY  V ++DL VMD TAI LC+ENNIP+
Sbjct: 152 IDAEVIFKATKVDGVYDADPEVYPNAKRYNSLTYAHVLAQDLRVMDSTAIALCKENNIPI 211

Query: 183 VVFNLNQPGNIAKAIQGERVGTLIGGTWN 211
           +VF+L   GNI +A+ GE +GTL+GG+  
Sbjct: 212 LVFDLTTRGNIRRAVLGESIGTLVGGSCE 240

Catalyzes the reversible phosphorylation of UMP to UDP.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q8YXK5|PYRH_NOSS1 Uridylate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=pyrH PE=3 SV=1

 Score =  284 bits (727), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 135/209 (64%), Positives = 170/209 (81%), Gaps = 1/209 (0%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           IA+E+A V   G+++AIVVGGGNIFRG  AA ++G+DR++ADYIGM+ATVMNA+ LQ ++
Sbjct: 33  IAQEIAEVIATGVQIAIVVGGGNIFRGVKAA-SAGMDRATADYIGMIATVMNAMTLQDSL 91

Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
           E IG+ TRVQTA  M E+AEPYIRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR AE
Sbjct: 92  ERIGVQTRVQTAIAMQELAEPYIRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAE 151

Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I+AEV+ KAT VDGVYD +P   PNA+  ++LTY  V ++DL VMD TAI LC+ENNIP+
Sbjct: 152 IDAEVIFKATKVDGVYDADPEIYPNAKRYNSLTYAHVLAQDLRVMDSTAIALCKENNIPI 211

Query: 183 VVFNLNQPGNIAKAIQGERVGTLIGGTWN 211
           +VF+L   GNI +A+ GE +GTL+GG+  
Sbjct: 212 LVFDLTTRGNIRRAVLGESIGTLVGGSCE 240

Catalyzes the reversible phosphorylation of UMP to UDP.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q0I8L5|PYRH_SYNS3 Uridylate kinase OS=Synechococcus sp. (strain CC9311) GN=pyrH PE=3 SV=1

 Score =  282 bits (721), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 137/205 (66%), Positives = 166/205 (80%), Gaps = 1/205 (0%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
           AIAR+VA V   G ++AIVVGGGNIFRG   +  +G+DR++ADY+GMLATVMNAI LQ  
Sbjct: 30  AIARDVAEVVATGTQLAIVVGGGNIFRGLKGSA-AGMDRATADYVGMLATVMNAITLQDG 88

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
           +E  GIPTRVQTA  M EVAEPYIRRRA+RHLEKGRVV+F AG GNPFFTTDT AALR A
Sbjct: 89  LERAGIPTRVQTAIEMQEVAEPYIRRRAMRHLEKGRVVVFGAGCGNPFFTTDTTAALRAA 148

Query: 122 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIP 181
           EI+A+VV KAT VDGVYD +P + P+A   D+LT+Q+V S +L+VMD TAI LC++NNIP
Sbjct: 149 EISADVVFKATKVDGVYDKDPHQFPDAVRYDSLTFQQVLSGELAVMDSTAIALCKDNNIP 208

Query: 182 VVVFNLNQPGNIAKAIQGERVGTLI 206
           +VVFNL +PGNI KA+ GE +G+ I
Sbjct: 209 IVVFNLFEPGNIGKAVAGEPIGSRI 233

Catalyzes the reversible phosphorylation of UMP to UDP.

Synechococcus sp. (strain CC9311) (taxid: 64471)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q3AV98|PYRH_SYNS9 Uridylate kinase OS=Synechococcus sp. (strain CC9902) GN=pyrH PE=3 SV=1

 Score =  281 bits (719), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 135/206 (65%), Positives = 166/206 (80%), Gaps = 1/206 (0%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
           +IA +VA V   G ++AIVVGGGNIFRG   +  +G+DR++ADY+GMLATVMNAI LQ  
Sbjct: 30  SIAEDVAKVVASGTQLAIVVGGGNIFRGLKGSA-AGMDRATADYVGMLATVMNAITLQDG 88

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
           +E  G+PTRVQTA  M EVAEPYIRR+A+RHLEKGRVV+F AG GNPFFTTDT AALR A
Sbjct: 89  LERAGVPTRVQTAIAMQEVAEPYIRRKAMRHLEKGRVVVFGAGCGNPFFTTDTTAALRAA 148

Query: 122 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIP 181
           EINA+VV KAT VDGVYD +P ++P+A   D L+YQ+V S +L VMD TAI+LC+ENNIP
Sbjct: 149 EINADVVFKATKVDGVYDKDPAKHPDAVKHDHLSYQDVLSGELGVMDATAISLCKENNIP 208

Query: 182 VVVFNLNQPGNIAKAIQGERVGTLIG 207
           +VVF+L +PGNI KA+ GE +G+ IG
Sbjct: 209 IVVFDLFEPGNIGKAVAGEPIGSRIG 234

Catalyzes the reversible phosphorylation of UMP to UDP.

Synechococcus sp. (strain CC9902) (taxid: 316279)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q7V6C2|PYRH_PROMM Uridylate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=pyrH PE=3 SV=1

 Score =  279 bits (714), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 133/205 (64%), Positives = 165/205 (80%), Gaps = 1/205 (0%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
           +IA +VA V   G ++AIVVGGGNIFRG   +  +G+DR++ADY+GMLATVMNAI LQ  
Sbjct: 30  SIAEDVAKVVAKGTQLAIVVGGGNIFRGLKGSA-AGMDRATADYVGMLATVMNAITLQDG 88

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
           +E  G+PTRVQTA  M EVAEPYIRRRA+RHLEKGRVV+F  G GNPFFTTDT A+LR A
Sbjct: 89  LERAGVPTRVQTAIEMQEVAEPYIRRRAIRHLEKGRVVVFGGGCGNPFFTTDTTASLRAA 148

Query: 122 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIP 181
           EINA+VV KAT VDGVYD +P+R P+A   D+LT+Q+V S +L+VMD TAI LC++NNIP
Sbjct: 149 EINADVVFKATKVDGVYDRDPKRFPDATRYDSLTFQQVLSGELAVMDSTAIALCKDNNIP 208

Query: 182 VVVFNLNQPGNIAKAIQGERVGTLI 206
           +VVF+L +PGNI KA+ GE +G+ I
Sbjct: 209 IVVFDLFEPGNIGKAVAGEAIGSRI 233

Catalyzes the reversible phosphorylation of UMP to UDP.

Prochlorococcus marinus (strain MIT 9313) (taxid: 74547)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

>sp|Q5N3B6|PYRH_SYNP6 Uridylate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=pyrH PE=3 SV=2

 Score =  279 bits (714), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 134/207 (64%), Positives = 166/207 (80%), Gaps = 1/207 (0%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           IA+E+A+V + G +VAIVVGGGNIFRG   A  +G++R++ADY+GM+ATVMNAI LQ  +
Sbjct: 31  IAQEIATVVQDGFQVAIVVGGGNIFRGIKGAA-AGMERATADYVGMIATVMNAITLQDAL 89

Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
           E + +PTRVQTA  M EVAEPYIRRRA+RHLEKGRVVIF +GTGNPFFTTDT AALR AE
Sbjct: 90  EQLQVPTRVQTAIAMQEVAEPYIRRRAIRHLEKGRVVIFGSGTGNPFFTTDTTAALRAAE 149

Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           INA+VV KAT VDGVYD +P+ NP AR   TL Y  V + +L VMD TAI LC++N+IP+
Sbjct: 150 INADVVFKATKVDGVYDSDPKLNPQARRFTTLNYNYVLNHELGVMDSTAIALCKDNSIPI 209

Query: 183 VVFNLNQPGNIAKAIQGERVGTLIGGT 209
           VVF+L   GNI +A+QGE +GT +GG+
Sbjct: 210 VVFDLFGEGNIRRAVQGEDIGTTVGGS 236

Catalyzes the reversible phosphorylation of UMP to UDP.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

EC: 2

EC: .

EC: 7

EC: .

EC: 4

EC: .

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
356512819	331	PREDICTED: uridylate kinase-like [Glycin	0.990	0.655	0.921	1e-113
449461831	341	PREDICTED: uridylate kinase-like [Cucumi	0.990	0.636	0.926	1e-113
15230160	339	uridylate kinase [Arabidopsis thaliana]	0.990	0.640	0.926	1e-113
297830522	334	aspartate/glutamate/uridylate kinase fam	0.990	0.649	0.926	1e-113
255552374	328	Uridylate kinase, putative [Ricinus comm	0.990	0.661	0.926	1e-113
356525588	325	PREDICTED: uridylate kinase-like [Glycin	0.986	0.664	0.916	1e-113
224131186	250	predicted protein [Populus trichocarpa]	0.990	0.868	0.926	1e-112
217074196	324	unknown [Medicago truncatula]	0.990	0.669	0.903	1e-111
255637835	325	unknown [Glycine max]	0.986	0.664	0.898	1e-110
388496114	324	unknown [Medicago truncatula]	0.990	0.669	0.884	1e-108

>gi|356512819|ref|XP_003525113.1| PREDICTED: uridylate kinase-like [Glycine max]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/217 (92%), Positives = 212/217 (97%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
           MAIAREVA+VTRLGIEVA+VVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQA
Sbjct: 115 MAIAREVAAVTRLGIEVALVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQA 174

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC
Sbjct: 175 TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 234

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           AEINAEVVLKATNVDGV+D++P+RNP ARL +TLTYQEVTSKDLSVMDMTAITLCQENNI
Sbjct: 235 AEINAEVVLKATNVDGVFDEDPKRNPQARLHETLTYQEVTSKDLSVMDMTAITLCQENNI 294

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 217
           PVVVFNLN+PGNI KAI+GERVGTLIG TWNSTVS+T
Sbjct: 295 PVVVFNLNKPGNIEKAIKGERVGTLIGATWNSTVSRT 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461831|ref|XP_004148645.1| PREDICTED: uridylate kinase-like [Cucumis sativus] gi|449507502|ref|XP_004163050.1| PREDICTED: uridylate kinase-like [Cucumis sativus]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/217 (92%), Positives = 211/217 (97%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
           MAIAREVA+VTRLGIEVAIVVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQA
Sbjct: 125 MAIAREVAAVTRLGIEVAIVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQA 184

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC
Sbjct: 185 TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 244

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           AEINAEV+LKATNVDGVYDD+PR+NPNARLL+TLTYQEVTSKDLSVMDMTAITLCQENNI
Sbjct: 245 AEINAEVLLKATNVDGVYDDDPRQNPNARLLETLTYQEVTSKDLSVMDMTAITLCQENNI 304

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 217
           PVVVFNL +P NI KAI+GERVGTLIGGTWNS V+ T
Sbjct: 305 PVVVFNLTKPDNITKAIKGERVGTLIGGTWNSMVAST 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230160|ref|NP_188498.1| uridylate kinase [Arabidopsis thaliana] gi|9293891|dbj|BAB01794.1| unnamed protein product [Arabidopsis thaliana] gi|15292789|gb|AAK92763.1| putative uridylate kinase [Arabidopsis thaliana] gi|20258857|gb|AAM14100.1| putative uridylate kinase [Arabidopsis thaliana] gi|332642610|gb|AEE76131.1| uridylate kinase [Arabidopsis thaliana]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/217 (92%), Positives = 213/217 (98%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
           MAIAREVA+VTRLGIEVAIVVGGGNIFRG++ AG SGLDRSSADYIGMLATVMNAIFLQA
Sbjct: 122 MAIAREVAAVTRLGIEVAIVVGGGNIFRGSTWAGCSGLDRSSADYIGMLATVMNAIFLQA 181

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           TMESIGIPTRVQTAFRMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRC
Sbjct: 182 TMESIGIPTRVQTAFRMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 241

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           AEINAEVVLKATNVDGV+DD+P+RNPNARLLD+LTYQEVTSKDLSVMDMTAITLCQENNI
Sbjct: 242 AEINAEVVLKATNVDGVFDDDPKRNPNARLLDSLTYQEVTSKDLSVMDMTAITLCQENNI 301

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 217
           PVVVFNL++PGNIAKAI+GERVGTLIGGTWNS V+ T
Sbjct: 302 PVVVFNLSEPGNIAKAIKGERVGTLIGGTWNSIVTTT 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830522|ref|XP_002883143.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297830524|ref|XP_002883144.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297328983|gb|EFH59402.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297328984|gb|EFH59403.1| aspartate/glutamate/uridylate kinase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/217 (92%), Positives = 213/217 (98%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
           MAIAREVA+VTRLGIEVAIVVGGGNIFRG++ AG SGLDRSSADYIGMLATVMNAIFLQA
Sbjct: 117 MAIAREVAAVTRLGIEVAIVVGGGNIFRGSTWAGCSGLDRSSADYIGMLATVMNAIFLQA 176

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           TMESIGIPTRVQTAFRMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRC
Sbjct: 177 TMESIGIPTRVQTAFRMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 236

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           AEINAEVVLKATNVDGV+DD+P+RNPNARLLD+LTYQEVTSKDLSVMDMTAITLCQENNI
Sbjct: 237 AEINAEVVLKATNVDGVFDDDPKRNPNARLLDSLTYQEVTSKDLSVMDMTAITLCQENNI 296

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 217
           PVVVFNL++PGNIAKAI+GERVGTLIGGTWNS V+ T
Sbjct: 297 PVVVFNLSEPGNIAKAIKGERVGTLIGGTWNSIVTTT 333

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552374|ref|XP_002517231.1| Uridylate kinase, putative [Ricinus communis] gi|223543602|gb|EEF45131.1| Uridylate kinase, putative [Ricinus communis]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 201/217 (92%), Positives = 212/217 (97%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
           MAIAREVASVTRLG+EVAIVVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQA
Sbjct: 112 MAIAREVASVTRLGVEVAIVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQA 171

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           TMESIGIPTRVQTAFRMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRC
Sbjct: 172 TMESIGIPTRVQTAFRMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 231

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           AEINAEVVLKATNVDGVYDD+PR NPNARLLDTLT+ EVTSKDLSVMDMTAITLCQENNI
Sbjct: 232 AEINAEVVLKATNVDGVYDDDPRHNPNARLLDTLTFHEVTSKDLSVMDMTAITLCQENNI 291

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 217
           PVVVFNL++PGNI+KAI GERVGTLIGGT NSTV++T
Sbjct: 292 PVVVFNLSEPGNISKAILGERVGTLIGGTRNSTVART 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525588|ref|XP_003531406.1| PREDICTED: uridylate kinase-like [Glycine max]

 Score =  412 bits (1058), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/216 (91%), Positives = 211/216 (97%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
           MAIAREVA+VTRLGIEVA+VVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQA
Sbjct: 109 MAIAREVAAVTRLGIEVALVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQA 168

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC
Sbjct: 169 TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 228

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           AEINAEVVLKATNVDGV+D++P+RNP ARL +TLTYQEVTSKDLSVMDMTAITLCQENNI
Sbjct: 229 AEINAEVVLKATNVDGVFDEDPKRNPQARLHETLTYQEVTSKDLSVMDMTAITLCQENNI 288

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSK 216
           PV+VFNLN+PGNI KAI+GERVGTLIG TWNSTVS+
Sbjct: 289 PVIVFNLNKPGNIEKAIKGERVGTLIGATWNSTVSR 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131186|ref|XP_002328476.1| predicted protein [Populus trichocarpa] gi|222838191|gb|EEE76556.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/217 (92%), Positives = 212/217 (97%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
           MAIAREVA+VTRLGIEVAIVVGGGNIFRG+S AG SGLDRSSADYIGMLATVMNAIFLQA
Sbjct: 34  MAIAREVATVTRLGIEVAIVVGGGNIFRGSSWAGCSGLDRSSADYIGMLATVMNAIFLQA 93

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC
Sbjct: 94  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 153

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           AEINA+VVLKATNVDGVYDD+P+RNPNARLL+ LTY EVTSKDLSVMDMTAITLCQENNI
Sbjct: 154 AEINAQVVLKATNVDGVYDDDPKRNPNARLLEDLTYHEVTSKDLSVMDMTAITLCQENNI 213

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 217
           PVVVFNL++PGNIAKAI+GERVGTLIGGT NSTV++T
Sbjct: 214 PVVVFNLSKPGNIAKAIKGERVGTLIGGTCNSTVART 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074196|gb|ACJ85458.1| unknown [Medicago truncatula]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/217 (90%), Positives = 209/217 (96%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
           M+IAREVA+VTR GIE A+VVGGGNIFRGAS AG+SGLDRSSADYIGMLATVMNAIFLQA
Sbjct: 108 MSIAREVAAVTRHGIEGALVVGGGNIFRGASWAGSSGLDRSSADYIGMLATVMNAIFLQA 167

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC
Sbjct: 168 TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 227

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           AEINAEVVLKATNVDGV+DD+P+RNP ARLLDTLTYQ+V  KDLSVMD+TAITLCQENNI
Sbjct: 228 AEINAEVVLKATNVDGVFDDDPKRNPQARLLDTLTYQDVIKKDLSVMDLTAITLCQENNI 287

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 217
           PVVVFNLN+PGNI KAI+GERVGTLIG TWNST+S+T
Sbjct: 288 PVVVFNLNKPGNIEKAIKGERVGTLIGATWNSTISRT 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637835|gb|ACU19237.1| unknown [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 194/216 (89%), Positives = 207/216 (95%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
           MAIAREVA+VTRLGIEVA+VVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQA
Sbjct: 109 MAIAREVAAVTRLGIEVALVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQA 168

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           TMESIG PTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC
Sbjct: 169 TMESIGTPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 228

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           AEINAEVVLKATNVDGV+D++P+RNP AR  +TLTYQEVTSKDLSVMDMTAITLCQENNI
Sbjct: 229 AEINAEVVLKATNVDGVFDEDPKRNPQARFHETLTYQEVTSKDLSVMDMTAITLCQENNI 288

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSK 216
           PV+VFN N+PGNI KAI+GERVGTLIG TWN TVS+
Sbjct: 289 PVIVFNFNKPGNIEKAIKGERVGTLIGATWNFTVSR 324

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496114|gb|AFK36123.1| unknown [Medicago truncatula]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/217 (88%), Positives = 205/217 (94%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
           M+IAREVA+VTR GIE A+VVGGGNIFRGAS AG+SGLDRSSADYIGMLATVMNAIFLQA
Sbjct: 108 MSIAREVAAVTRHGIEAALVVGGGNIFRGASWAGSSGLDRSSADYIGMLATVMNAIFLQA 167

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC
Sbjct: 168 TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 227

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           AEINAEVVLKATNVDGV+DD+P+ NP A  LDTLTYQ+V  KDLSVMD+TAITLCQENNI
Sbjct: 228 AEINAEVVLKATNVDGVFDDDPKGNPQAGFLDTLTYQDVIKKDLSVMDLTAITLCQENNI 287

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 217
           PVVVFNLN+PGNI KAI+GERVGTLIG TWN T+S+T
Sbjct: 288 PVVVFNLNKPGNIEKAIKGERVGTLIGATWNFTISRT 324

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2093949	339	AT3G18680 [Arabidopsis thalian	0.990	0.640	0.926	2e-102
TIGR_CMR|CHY_1785	242	CHY_1785 "uridylate kinase" [C	0.940	0.851	0.615	2.2e-66
TIGR_CMR|GSU_1919	239	GSU_1919 "uridylate kinase" [G	0.940	0.861	0.574	1.4e-62
TIGR_CMR|BA_3963	240	BA_3963 "uridylate kinase" [Ba	0.940	0.858	0.572	3.9e-60
TIGR_CMR|DET_0375	241	DET_0375 "uridylate kinase" [D	0.931	0.846	0.572	6.6e-58
UNIPROTKB|P65929	261	pyrH "Uridylate kinase" [Mycob	0.926	0.777	0.549	1.2e-56
TIGR_CMR|CBU_1384	243	CBU_1384 "uridylate kinase" [C	0.926	0.835	0.519	9.9e-55
TIGR_CMR|SPO_1662	251	SPO_1662 "uridylate kinase" [R	0.936	0.816	0.541	2.6e-54
TIGR_CMR|ECH_0266	244	ECH_0266 "uridylate kinase" [E	0.931	0.836	0.504	7e-54
TIGR_CMR|CJE_1410	239	CJE_1410 "uridylate kinase" [C	0.904	0.828	0.540	1.7e-52

TAIR|locus:2093949 AT3G18680 [Arabidopsis thaliana (taxid:3702)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 201/217 (92%), Positives = 213/217 (98%)

Query:     1 MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
             MAIAREVA+VTRLGIEVAIVVGGGNIFRG++ AG SGLDRSSADYIGMLATVMNAIFLQA
Sbjct:   122 MAIAREVAAVTRLGIEVAIVVGGGNIFRGSTWAGCSGLDRSSADYIGMLATVMNAIFLQA 181

Query:    61 TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
             TMESIGIPTRVQTAFRMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRC
Sbjct:   182 TMESIGIPTRVQTAFRMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 241

Query:   121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
             AEINAEVVLKATNVDGV+DD+P+RNPNARLLD+LTYQEVTSKDLSVMDMTAITLCQENNI
Sbjct:   242 AEINAEVVLKATNVDGVFDDDPKRNPNARLLDSLTYQEVTSKDLSVMDMTAITLCQENNI 301

Query:   181 PVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 217
             PVVVFNL++PGNIAKAI+GERVGTLIGGTWNS V+ T
Sbjct:   302 PVVVFNLSEPGNIAKAIKGERVGTLIGGTWNSIVTTT 338

GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA;ISS

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0033862 "UMP kinase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TIGR_CMR|CHY_1785 CHY_1785 "uridylate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 128/208 (61%), Positives = 165/208 (79%)

Query:     2 AIAREVASVTR-LGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
             +IA ++A + +  GI+VA+VVGGGNI+RG S +   G+DR++ADY+GMLATV+N++ LQ 
Sbjct:    33 SIAGQIAEIIKEFGIQVAVVVGGGNIWRGLSGSAK-GMDRATADYMGMLATVINSLALQD 91

Query:    61 TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
              +E +GI TRVQTA  M ++AEPYIRRRA+RHLEKGRVVIFAAGTGNP+F+TDT AALR 
Sbjct:    92 ALEKLGIDTRVQTAIEMRQIAEPYIRRRAIRHLEKGRVVIFAAGTGNPYFSTDTTAALRA 151

Query:   121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
             AEI AEV+L A  VDGVYD +P +NPNA+  D L Y EV ++ L VMD TA +LC +NNI
Sbjct:   152 AEIEAEVILMAKRVDGVYDSDPLKNPNAQKFDELEYIEVLNRGLGVMDSTATSLCMDNNI 211

Query:   181 PVVVFNLNQPGNIAKAIQGERVGTLIGG 208
             P++VFNL  PGNI + I GE +GT++GG
Sbjct:   212 PLIVFNLEVPGNIKRVILGENIGTIVGG 239

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|GSU_1919 GSU_1919 "uridylate kinase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 119/207 (57%), Positives = 158/207 (76%)

Query:     2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
             AIA E+  V   G ++A+V+GGGNIFRG  AA + G+DR+SADY+GMLAT++N++ +Q  
Sbjct:    33 AIAAEIKEVVATGSQLALVIGGGNIFRGL-AASSKGMDRASADYMGMLATMINSLAMQDA 91

Query:    62 MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
             +E +G+ TRVQ+A  M EVAEPYIRRRA+RHLEKGR+VIF AGTGNP+FTTDTAA+LR  
Sbjct:    92 LEKVGVDTRVQSAIAMQEVAEPYIRRRAIRHLEKGRIVIFGAGTGNPYFTTDTAASLRAM 151

Query:   122 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIP 181
             EI A+V+LK T VDGVY  +P+++P A     LTY EV  K L VMD TA +LC +NN+P
Sbjct:   152 EIGADVILKGTKVDGVYSADPKKDPTAIKYPRLTYLEVLKKGLQVMDATATSLCMDNNLP 211

Query:   182 VVVFNLNQPGNIAKAIQGERVGTLIGG 208
             ++VF++   GNI K + GE +GT++ G
Sbjct:   212 IIVFDITTYGNIKKVVCGEEIGTIVKG 238

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|BA_3963 BA_3963 "uridylate kinase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 119/208 (57%), Positives = 160/208 (76%)

Query:     2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
             ++A +V  +  L +EVA+VVGGGNI+RG       G+DR+ ADY+GMLATVMN++ LQ +
Sbjct:    33 SVAEQVKEIAELDVEVAVVVGGGNIWRG-KIGSEMGMDRAGADYMGMLATVMNSLALQDS 91

Query:    62 MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
             +E+IGI TRVQT+  M +VAEPYIRR+AVRHLEK RVVIFAAGTGNP+F+TDT AALR A
Sbjct:    92 LENIGIQTRVQTSIEMRQVAEPYIRRKAVRHLEKKRVVIFAAGTGNPYFSTDTTAALRAA 151

Query:   122 EINAEVVLKA-TNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
             EI A+V+L A  NVDGVY+ +P  +P A   +TLTY +V  + L VMD TA +LC +N+I
Sbjct:   152 EIEADVILMAKNNVDGVYNADPSIDPTATKYETLTYLDVLKEGLGVMDSTASSLCMDNDI 211

Query:   181 PVVVFNLNQPGNIAKAIQGERVGTLIGG 208
             P++VF++ + GNI +A+ GE +GT++ G
Sbjct:   212 PLIVFSVMEKGNIKRAVLGENIGTVVRG 239

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|DET_0375 DET_0375 "uridylate kinase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 118/206 (57%), Positives = 154/206 (74%)

Query:     2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
             +IA E+  +  +G+EVAIVVGGGNI+RGA+AA   G+DR SADY GMLAT++NA+ LQ  
Sbjct:    33 SIAHEIKHICLMGVEVAIVVGGGNIWRGATAA-KEGIDRVSADYAGMLATIINALTLQDA 91

Query:    62 MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
             +E  GI TR Q+A  + +VAEPYI RRA+RHLEKGRVVIFA GTGNP+ TTDTAAALR  
Sbjct:    92 LEREGIVTRTQSALAVQQVAEPYICRRAIRHLEKGRVVIFAGGTGNPYMTTDTAAALRAI 151

Query:   122 EINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
             EI A+V+L A N VDGVY  +P+++P A L   LT+ E  +K L VMD TA++LC +N +
Sbjct:   152 EIEADVLLMAKNKVDGVYTADPKKHPEATLFQHLTHMEAINKRLQVMDATALSLCLDNKL 211

Query:   181 PVVVFNLNQPGNIAKAIQGERVGTLI 206
             P++VF+L    ++  AI G+ +GTLI
Sbjct:   212 PIIVFDLQSSESLVSAISGQPIGTLI 237

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

UNIPROTKB|P65929 pyrH "Uridylate kinase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 112/204 (54%), Positives = 152/204 (74%)

Query:     3 IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
             +AR++A V R G+++A+V+GGGN FRGA      G++R+ +DY+GML TVMN++ LQ  +
Sbjct:    57 VARQIADVVRGGVQIAVVIGGGNFFRGAQLQ-QLGMERTRSDYMGMLGTVMNSLALQDFL 115

Query:    63 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
             E  GI TRVQTA  M +VAEPY+  RAVRHLEKGRVVIF AG G P+F+TDT AA R  E
Sbjct:   116 EKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALE 175

Query:   123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
             I A+VVL A  VDGV+ ++PR NP A LL  ++++EV  + L V D TA +LC +N +P+
Sbjct:   176 IGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPI 235

Query:   183 VVFNLNQPGNIAKAIQGERVGTLI 206
             +VFNL   GNIA+A++GE++GTL+
Sbjct:   236 LVFNLLTDGNIARAVRGEKIGTLV 259

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006225 "UDP biosynthetic process" evidence=IDA

GO:0033862 "UMP kinase activity" evidence=IDA

GO:0040007 "growth" evidence=IMP

GO:0051289 "protein homotetramerization" evidence=IPI

TIGR_CMR|CBU_1384 CBU_1384 "uridylate kinase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 106/204 (51%), Positives = 152/204 (74%)

Query:     3 IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
             +A++V  V +LG+++AIV+GGGN FRGA+    +G++R + DY+GMLAT+MNA+ L+   
Sbjct:    37 MAKDVTQVYQLGVQIAIVIGGGNFFRGAALQA-AGINRITGDYMGMLATLMNALALRDAF 95

Query:    63 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
             E   +P R+ +A  M+ VA+ + RR+A+ HL++GRVVIFAAGTGNP  TTD+AA+LR  E
Sbjct:    96 ERSNLPVRILSAIPMTGVADAFHRRKAIHHLQQGRVVIFAAGTGNPLVTTDSAASLRGIE 155

Query:   123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
             INA+VVLKATNVDGVY D+P +NP A+L   L+YQE   K+L+VMD+ A   C++ N+P+
Sbjct:   156 INADVVLKATNVDGVYSDDPAKNPQAKLYKHLSYQEALKKELAVMDLAAFCQCRDYNMPL 215

Query:   183 VVFNLNQPGNIAKAIQGERVGTLI 206
              VFN+N+PG +   I  +  GTL+
Sbjct:   216 RVFNINKPGALLSVIMNQEEGTLV 239

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|SPO_1662 SPO_1662 "uridylate kinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 112/207 (54%), Positives = 149/207 (71%)

Query:     3 IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
             IA E+ +V  +G+E+ +V+GGGNIFRG S A   G++R++ADY+GMLATVMNA+ +QA +
Sbjct:    46 IAHEIKTVHDMGVEICMVIGGGNIFRGLSGAAQ-GMERTTADYMGMLATVMNALGMQAAL 104

Query:    63 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
             E +G+ TRV +A RM EVAEPYIRRRAVRHLEK RV IFAAGTGNP+FTTDTAA LR  E
Sbjct:   105 EGLGVFTRVISAIRMDEVAEPYIRRRAVRHLEKKRVCIFAAGTGNPYFTTDTAATLRANE 164

Query:   123 INAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIP 181
             +  E +    N VDGVYD +P  + +A   D ++Y EV +K L VMD +AI L ++NN+P
Sbjct:   165 MACEAIFMGKNGVDGVYDKDPALHDDAVRYDEISYDEVLAKRLKVMDASAIALARDNNLP 224

Query:   182 VVVFNLNQPGNIAKAIQGERVGTLIGG 208
             ++VF+L+  G     + GE   T + G
Sbjct:   225 LIVFSLDTAGGFRGILAGEGTYTKVQG 251

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|ECH_0266 ECH_0266 "uridylate kinase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 103/204 (50%), Positives = 152/204 (74%)

Query:     3 IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
             ++ ++  V   G+++ +VVGGGNIFRGASA+ + G +R+S DYIGMLAT+MNA+ LQ  +
Sbjct:    39 LSHDLKEVHSFGVQLCLVVGGGNIFRGASASASFGFERASNDYIGMLATMMNALSLQNAL 98

Query:    63 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
             E + + +RV +A  ++ V E YIRRRA+RHLEKGRVVI AAG G+PFFTTDTAAALR  E
Sbjct:    99 EKVNVQSRVLSAIPITAVCETYIRRRAIRHLEKGRVVICAAGVGSPFFTTDTAAALRGIE 158

Query:   123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
             +  + + K T VDGVY  +P++N +A   D ++Y+++ S DL +MD+ A++L +E+++P+
Sbjct:   159 MGCDAIFKGTQVDGVYSADPKKNADAVRYDKISYRDLLSLDLKIMDVAAVSLAREHSVPI 218

Query:   183 VVFNLNQPGNIAKAIQGERVGTLI 206
             +VFNL QPG+ A  I+G+ + T I
Sbjct:   219 IVFNLGQPGSFADIIRGDGLYTTI 242

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

TIGR_CMR|CJE_1410 CJE_1410 "uridylate kinase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 107/198 (54%), Positives = 144/198 (72%)

Query:     3 IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
             IA E+  + +  IEV IV+GGGNI RG SAA    + R+S D++GMLATV+NAI +Q  +
Sbjct:    32 IASEIKELIKNQIEVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEAL 91

Query:    63 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
             ES G+  RVQ+A +M    E YI RRA RHLEKGRVV+FAAGTGNP+FTTDT A LR  E
Sbjct:    92 ESSGLEVRVQSAIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVE 151

Query:   123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
             I+A++V+KAT V+GVYD +P++  +A  L+TL+Y E    ++ VMD TAI L ++N +P+
Sbjct:   152 IDADMVIKATKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPI 211

Query:   183 VVFNLNQPGNIAKAIQGE 200
             VV N+ + GN+ K IQG+
Sbjct:   212 VVCNMFEEGNLLKIIQGD 229

GO:0009041 "uridylate kinase activity" evidence=ISS

GO:0015949 "nucleobase-containing small molecule interconversion" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A2BVI4	PYRH_PROM5	2, ., 7, ., 4, ., 2, 2	0.6048	0.9315	0.8717	yes	no
Q0BTM0	PYRH_GRABC	2, ., 7, ., 4, ., 2, 2	0.6161	0.8995	0.8008	yes	no
Q8DM63	PYRH_THEEB	2, ., 7, ., 4, ., 2, 2	0.6201	0.9452	0.8553	yes	no
Q3ALP7	PYRH_SYNSC	2, ., 7, ., 4, ., 2, 2	0.6310	0.9360	0.8649	yes	no
Q7U5F5	PYRH_SYNPX	2, ., 7, ., 4, ., 2, 2	0.6456	0.9360	0.8649	yes	no
Q3A397	PYRH_PELCD	2, ., 7, ., 4, ., 2, 2	0.6019	0.9360	0.8506	yes	no
A6TRM1	PYRH_ALKMQ	2, ., 7, ., 4, ., 2, 2	0.6078	0.9178	0.8516	yes	no
Q7VD61	PYRH_PROMA	2, ., 7, ., 4, ., 2, 2	0.6146	0.9315	0.8607	yes	no
Q39W86	PYRH_GEOMG	2, ., 7, ., 4, ., 2, 2	0.5825	0.9360	0.8577	yes	no
Q5N3B6	PYRH_SYNP6	2, ., 7, ., 4, ., 2, 2	0.6473	0.9406	0.8583	yes	no
Q2JJE2	PYRH_SYNJB	2, ., 7, ., 4, ., 2, 2	0.6699	0.9406	0.8142	yes	no
Q3B5T8	PYRH_PELLD	2, ., 7, ., 4, ., 2, 2	0.5784	0.9269	0.8638	yes	no
Q0I8L5	PYRH_SYNS3	2, ., 7, ., 4, ., 2, 2	0.6682	0.9315	0.8680	yes	no
Q044C8	PYRH_LACGA	2, ., 7, ., 4, ., 2, 2	0.5748	0.9360	0.8506	yes	no
Q8YXK5	PYRH_NOSS1	2, ., 7, ., 4, ., 2, 2	0.6459	0.9497	0.8595	yes	no
Q3AB79	PYRH_CARHZ	2, ., 7, ., 4, ., 2, 2	0.6153	0.9406	0.8512	yes	no
Q7V2F8	PYRH_PROMP	2, ., 7, ., 4, ., 2, 2	0.6097	0.9315	0.8717	yes	no
A5GSA3	PYRH_SYNR3	2, ., 7, ., 4, ., 2, 2	0.6390	0.9315	0.8607	yes	no
A3DE57	PYRH_CLOTH	2, ., 7, ., 4, ., 2, 2	0.6176	0.9178	0.8553	yes	no
Q3AV98	PYRH_SYNS9	2, ., 7, ., 4, ., 2, 2	0.6553	0.9360	0.8649	yes	no
Q8XJQ8	PYRH_CLOPE	2, ., 7, ., 4, ., 2, 2	0.5873	0.9269	0.8565	yes	no
Q2JS42	PYRH_SYNJA	2, ., 7, ., 4, ., 2, 2	0.6682	0.9497	0.8188	yes	no
Q0SSC2	PYRH_CLOPS	2, ., 7, ., 4, ., 2, 2	0.5922	0.9269	0.8565	yes	no
A3PBP6	PYRH_PROM0	2, ., 7, ., 4, ., 2, 2	0.6	0.9315	0.8717	yes	no
Q7V6C2	PYRH_PROMM	2, ., 7, ., 4, ., 2, 2	0.6487	0.9315	0.8607	yes	no
A2BQ03	PYRH_PROMS	2, ., 7, ., 4, ., 2, 2	0.6048	0.9315	0.8717	yes	no
A2C7Q3	PYRH_PROM3	2, ., 7, ., 4, ., 2, 2	0.6439	0.9315	0.8607	yes	no
Q6MGY5	PYRH_BDEBA	2, ., 7, ., 4, ., 2, 2	0.5735	0.9269	0.8565	yes	no
A8G3N7	PYRH_PROM2	2, ., 7, ., 4, ., 2, 2	0.6097	0.9315	0.8717	yes	no
A4J5Z1	PYRH_DESRM	2, ., 7, ., 4, ., 2, 2	0.5761	0.9543	0.8636	yes	no
A0LJ65	PYRH_SYNFM	2, ., 7, ., 4, ., 2, 2	0.6019	0.9360	0.8367	yes	no
A7H724	PYRH_ANADF	2, ., 7, ., 4, ., 2, 2	0.6067	0.9360	0.8232	yes	no
Q3MFI4	PYRH_ANAVT	2, ., 7, ., 4, ., 2, 2	0.6459	0.9497	0.8595	yes	no
A5GJF0	PYRH_SYNPW	2, ., 7, ., 4, ., 2, 2	0.6536	0.9315	0.8680	yes	no
Q74IR8	PYRH_LACJO	2, ., 7, ., 4, ., 2, 2	0.5845	0.9360	0.8506	yes	no
P43891	PYRH_THET8	2, ., 7, ., 4, ., 2, 2	0.6116	0.9269	0.8712	yes	no
Q0APW3	PYRH_MARMM	2, ., 7, ., 4, ., 2, 2	0.5951	0.9315	0.7756	yes	no
Q46GQ4	PYRH_PROMT	2, ., 7, ., 4, ., 2, 2	0.6292	0.9315	0.8607	yes	no
A1BHZ3	PYRH_CHLPD	2, ., 7, ., 4, ., 2, 2	0.5911	0.9223	0.8559	yes	no
Q2IMM2	PYRH_ANADE	2, ., 7, ., 4, ., 2, 2	0.6262	0.9360	0.8167	yes	no
Q31QY1	PYRH_SYNE7	2, ., 7, ., 4, ., 2, 2	0.6473	0.9406	0.8583	yes	no
A4XM00	PYRH_CALS8	2, ., 7, ., 4, ., 2, 2	0.6195	0.9178	0.8410	yes	no
Q8R6G5	PYRH_FUSNN	2, ., 7, ., 4, ., 2, 2	0.5812	0.9223	0.8451	yes	no
Q10Y48	PYRH_TRIEI	2, ., 7, ., 4, ., 2, 2	0.6478	0.9680	0.8688	yes	no
Q1D1I1	PYRH_MYXXD	2, ., 7, ., 4, ., 2, 2	0.5952	0.9497	0.832	yes	no
Q31C12	PYRH_PROM9	2, ., 7, ., 4, ., 2, 2	0.6097	0.9315	0.8717	yes	no
Q72KD9	PYRH_THET2	2, ., 7, ., 4, ., 2, 2	0.6116	0.9269	0.8712	yes	no
A2C0Y1	PYRH_PROM1	2, ., 7, ., 4, ., 2, 2	0.6292	0.9315	0.8607	yes	no
Q24UF9	PYRH_DESHY	2, ., 7, ., 4, ., 2, 2	0.6146	0.9315	0.85	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.4	0.963
4th Layer	2.7.4.22	0.946

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT3G18680	aspartate/glutamate/uridylate kinase family protein; aspartate/glutamate/uridylate kinase family protein; FUNCTIONS IN- uridylate kinase activity, UMP kinase activity; INVOLVED IN- amino acid biosynthetic process, 'de novo' pyrimidine base biosynthetic process, pyrimidine nucleotide biosynthetic process; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Aspartate/glutamate/uridylate kinase (InterPro-IPR001048), Uridylate kinase, bacteria (InterPro-IPR015963); BEST Arabidopsis thaliana protein match is- aspartate/ [...] (339 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT3G53900	uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativ [...] (296 aa)				•		•	•		0.996
	RRF	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR); RIBOSOME RECYCLING FACTOR, CHLOROPLAST [...] (275 aa)	•			•			•		0.993
	NDPK2	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2); ATP binding / nucleoside diphosphate kinase/ protein b [...] (231 aa)				•		•	•		0.988
	AT3G54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); encodes the bi-functional oro [...] (476 aa)				•		•	•		0.985
	RIF10	RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/ RNA binding / nucleic acid [...] (922 aa)	•			•		•	•		0.981
	NDPK1	NDPK1; ATP binding / nucleoside diphosphate kinase; nucleoside diphosphate kinase type 1 (NDPK1 [...] (169 aa)				•		•	•		0.979
	AT4G11120	translation elongation factor Ts (EF-Ts), putative; translation elongation factor Ts (EF-Ts), p [...] (395 aa)	•			•	•		•		0.974
	AT3G13120	30S ribosomal protein S10, chloroplast, putative; 30S ribosomal protein S10, chloroplast, putat [...] (191 aa)	•			•	•		•		0.962
	NDPK3	NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3); ATP binding / nucleoside diphosphate kinase; nucleosid [...] (238 aa)						•	•		0.960
	AT1G17410	nucleoside diphosphate kinase family protein; nucleoside diphosphate kinase family protein; FUN [...] (181 aa)						•	•		0.960

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
cd04254	231	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t	1e-133
PRK00358	231	PRK00358, pyrH, uridylate kinase; Provisional	1e-126
cd04239	229	cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase	1e-116
TIGR02075	232	TIGR02075, pyrH_bact, uridylate kinase	1e-109
COG0528	238	COG0528, PyrH, Uridylate kinase [Nucleotide transp	1e-108
PRK14558	231	PRK14558, pyrH, uridylate kinase; Provisional	8e-68
PRK14557	247	PRK14557, pyrH, uridylate kinase; Provisional	1e-61
PRK14556	249	PRK14556, pyrH, uridylate kinase; Provisional	8e-52
cd04253	221	cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k	3e-34
TIGR02076	221	TIGR02076, pyrH_arch, uridylate kinase, putative	5e-32
cd02115	248	cd02115, AAK, Amino Acid Kinases (AAK) superfamily	4e-28
pfam00696	230	pfam00696, AA_kinase, Amino acid kinase family	3e-27
COG0527	447	COG0527, LysC, Aspartokinases [Amino acid transpor	1e-12
cd04242	251	cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-k	2e-12
cd04255	262	cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD i	2e-12
TIGR00657	441	TIGR00657, asp_kinases, aspartate kinase	1e-11
COG1608	252	COG1608, COG1608, Predicted archaeal kinase [Gener	2e-11
cd04234	227	cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa	2e-11
COG0263	369	COG0263, ProB, Glutamate 5-kinase [Amino acid tran	4e-10
cd04241	252	cd04241, AAK_FomA-like, AAK_FomA-like: This CD inc	1e-09
TIGR01027	363	TIGR01027, proB, glutamate 5-kinase	3e-09
cd04246	239	cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino	3e-09
PRK08210	403	PRK08210, PRK08210, aspartate kinase I; Reviewed	5e-09
PRK05429	372	PRK05429, PRK05429, gamma-glutamyl kinase; Provisi	7e-09
cd04260	244	cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A	1e-08
cd04256	284	cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate	1e-08
cd04259	295	cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Ki	3e-08
PRK09436	819	PRK09436, thrA, bifunctional aspartokinase I/homos	5e-08
cd04261	239	cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino	9e-08
PRK06291	465	PRK06291, PRK06291, aspartate kinase; Provisional	9e-08
cd04243	293	cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino	1e-07
cd04257	294	cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kina	1e-07
PRK08961	861	PRK08961, PRK08961, bifunctional aspartate kinase/	1e-07
cd04244	298	cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino	3e-07
PRK12314	266	PRK12314, PRK12314, gamma-glutamyl kinase; Provisi	3e-07
TIGR01092	715	TIGR01092, P5CS, delta l-pyrroline-5-carboxylate s	2e-06
PLN02418	718	PLN02418, PLN02418, delta-1-pyrroline-5-carboxylat	3e-06
COG2054	212	COG2054, COG2054, Uncharacterized archaeal kinase	3e-06
TIGR00656	401	TIGR00656, asp_kin_monofn, aspartate kinase, monof	1e-05
PRK13402	368	PRK13402, PRK13402, gamma-glutamyl kinase; Provisi	3e-05
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	5e-05
PRK08841	392	PRK08841, PRK08841, aspartate kinase; Validated	8e-05
PRK08373	341	PRK08373, PRK08373, aspartate kinase; Validated	1e-04
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	1e-04
cd04245	288	cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Ami	3e-04
cd04240	203	cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amin	3e-04
cd04249	252	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glut	7e-04
TIGR02078	327	TIGR02078, AspKin_pair, Pyrococcus aspartate kinas	0.002
cd04258	292	cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami	0.004

>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score =  373 bits (960), Expect = e-133
 Identities = 144/207 (69%), Positives = 172/207 (83%), Gaps = 1/207 (0%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
             IARE+  V  LG+EVAIVVGGGNIFRGASAA   G+DR++ADY+GMLATV+NA+ LQ 
Sbjct: 26  NRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEA-GMDRATADYMGMLATVINALALQD 84

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
            +ES+G+ TRV +A  M  VAEPYIRRRA+RHLEKGRVVIFA GTGNPFFTTDTAAALR 
Sbjct: 85  ALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRA 144

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
            EINA+V+LKAT VDGVYD +P++NPNA+  D LTY EV SK L VMD TA TLC++NN+
Sbjct: 145 IEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNL 204

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIG 207
           P+VVFN+N+PGN+ KA++GE VGTLI 
Sbjct: 205 PIVVFNINEPGNLLKAVKGEGVGTLIS 231

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231

>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional

 Score =  356 bits (916), Expect = e-126
 Identities = 133/205 (64%), Positives = 166/205 (80%), Gaps = 1/205 (0%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           IA E+  V  LG+EVAIVVGGGNIFRG   A   G+DR++ADY+GMLATVMNA+ LQ  +
Sbjct: 28  IAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAA-GMDRATADYMGMLATVMNALALQDAL 86

Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
           E  G+ TRVQ+A  M +VAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALR  E
Sbjct: 87  ERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEE 146

Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I A+V+LKATNVDGVYD +P+++P+A+  D LTY EV  K L VMD TAI+L ++N IP+
Sbjct: 147 IGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPI 206

Query: 183 VVFNLNQPGNIAKAIQGERVGTLIG 207
           +VFN+N+PGN+ + ++GE +GTL+ 
Sbjct: 207 IVFNMNKPGNLKRVVKGEHIGTLVS 231

Length = 231

>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

 Score =  329 bits (847), Expect = e-116
 Identities = 130/207 (62%), Positives = 161/207 (77%), Gaps = 1/207 (0%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
             IARE+  V  LG+EVAIVVGGGNI RG  AA   G+ R++ADYIGMLATVMNA+ LQ 
Sbjct: 24  KEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAAR-GMPRATADYIGMLATVMNALALQD 82

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
            +E +G+ TRV +A  M  VAEPYIRRRA+RHLEKGR+VIF  GTGNP FTTDTAAALR 
Sbjct: 83  ALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRA 142

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
            EI A+V+LKATNVDGVYD +P++NP+A+  D ++Y E+  K L VMD TA+TLC+ N I
Sbjct: 143 EEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKI 202

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIG 207
           P++VFN  +PGN+ +A++GE VGTLI 
Sbjct: 203 PIIVFNGLKPGNLLRALKGEHVGTLIE 229

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229

>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase

 Score =  311 bits (800), Expect = e-109
 Identities = 118/204 (57%), Positives = 160/204 (78%), Gaps = 1/204 (0%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           IA E+  + ++GIEV IV+GGGNIFRG SAA   G+DR SADY+GMLATV+N + L+  +
Sbjct: 29  IANEIKELVKMGIEVGIVIGGGNIFRGVSAA-ELGIDRVSADYMGMLATVINGLALRDAL 87

Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
           E +G+ TRV +A  M ++ E YIRR+A++HLEKG+VVIF+ GTGNPFFTTDTAAALR  E
Sbjct: 88  EKLGLKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIE 147

Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           INA+V+LK TNVDGVY  +P++N +A+  DT+TY E   K+L VMD+TA  L ++NN+P+
Sbjct: 148 INADVILKGTNVDGVYTADPKKNKDAKKYDTITYNEALKKNLKVMDLTAFALARDNNLPI 207

Query: 183 VVFNLNQPGNIAKAIQGERVGTLI 206
           VVFN+++PG + K I G+ +GTL+
Sbjct: 208 VVFNIDKPGALKKVILGKGIGTLV 231

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232

>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism]

 Score =  309 bits (793), Expect = e-108
 Identities = 125/208 (60%), Positives = 161/208 (77%), Gaps = 2/208 (0%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
            IA E+  +  LG+EVA+VVGGGNI RG   A  +G+DR +ADY+GMLATVMNA+ LQ  
Sbjct: 32  RIANEIKELVDLGVEVAVVVGGGNIARGYIGA-AAGMDRVTADYMGMLATVMNALALQDA 90

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
           +E +G+ TRVQ+A  M +VAEPY RR A+RHLEKGRVVIF  GTGNP FTTDTAAALR  
Sbjct: 91  LERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAE 150

Query: 122 EINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           EI A+V+LKATN VDGVYD +P+++P+A+  DTLTY EV    L VMD TA +L ++N I
Sbjct: 151 EIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGI 210

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGG 208
           P++VFN+N+PGN+ +A++GE VGT++  
Sbjct: 211 PIIVFNINKPGNLKRALKGEEVGTIVEP 238

Length = 238

>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional

 Score =  207 bits (529), Expect = 8e-68
 Identities = 85/204 (41%), Positives = 125/204 (61%), Gaps = 3/204 (1%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           +  E+ SV   G ++ IV+G GN+FRG        L  + AD IGML TV+NA++L+   
Sbjct: 28  LVNEIKSVVEYGFKIGIVIGAGNLFRGVEL---KELSPTRADQIGMLGTVINALYLKDIF 84

Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
           E  G+   + +        EP        +   G +VIFA GT NPFFTTDTAAALR  E
Sbjct: 85  EKSGLKAVIVSQIVNLPSVEPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVE 144

Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           + A++++KAT VDG+YD +P++ P+A+ +D LT+ E     L VMD  A ++C++  I +
Sbjct: 145 MKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITI 204

Query: 183 VVFNLNQPGNIAKAIQGERVGTLI 206
           +V N  +PGN+ KA++GE VGTL+
Sbjct: 205 LVINFFEPGNLLKALKGENVGTLV 228

Length = 231

>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional

 Score =  192 bits (489), Expect = 1e-61
 Identities = 92/206 (44%), Positives = 130/206 (63%), Gaps = 3/206 (1%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           IA E+ S+  LGIEV+IV+GGGNIFRG   A   G+DR  AD IG L T++N++ L+  +
Sbjct: 32  IANEILSIVDLGIEVSIVIGGGNIFRG-HLAEEWGIDRVEADNIGTLGTIINSLMLRGVL 90

Query: 63  ES-IGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
            S      RV T+   + VAEPYIR RAV HL+ G +VIF  G G PF TTD  +  R  
Sbjct: 91  TSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAI 150

Query: 122 EINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           E+N++ +L A   VDGV+  +P+ N +A++   L Y +V  +++ VMD  A+ L ++ N+
Sbjct: 151 EMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNL 210

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLI 206
           P  VFN ++PG + +   GE VGTLI
Sbjct: 211 PAHVFNFDEPGVMRRICLGEHVGTLI 236

Length = 247

>gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional

 Score =  167 bits (424), Expect = 8e-52
 Identities = 87/204 (42%), Positives = 133/204 (65%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           I  ++ ++T  G+E+A+VVGGGNI RG  A   + + R++AD +GM+AT++NA+ L+  +
Sbjct: 43  IINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDML 102

Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
            S G+   V +A  +  + +        + L KGRV+IFA GTGNPF TTDT A+LR  E
Sbjct: 103 ISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVE 162

Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I A+ +LKAT V+GVYD +P +  +A+  D +T+ EV SK+L+VMD+ A T C++  IP+
Sbjct: 163 IGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPI 222

Query: 183 VVFNLNQPGNIAKAIQGERVGTLI 206
            VF+L QP  +  A+   + GT +
Sbjct: 223 YVFDLTQPNALVDAVLDSKYGTWV 246

Length = 249

>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score =  121 bits (305), Expect = 3e-34
 Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 29/204 (14%)

Query: 16  EVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESI--GIPTRVQ 72
           +VA+VVGGG + R   S A   G   +  D IG++AT +NA  L A +      +PT  +
Sbjct: 35  KVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLNARLLIAALGDAYPPVPTSYE 94

Query: 73  TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 132
            A                     G++V+   GT  P  +TD  AAL    + A++++ AT
Sbjct: 95  EALEAMF---------------TGKIVV-MGGT-EPGQSTDAVAALLAERLGADLLINAT 137

Query: 133 NVDGVYDDNPRRNPNARLLDTLTYQE----VTSKDL-----SVMDMTAITLCQENNIPVV 183
           NVDGVY  +PR++P+A+  D L+  E    V             D  A  + + + I  +
Sbjct: 138 NVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTI 197

Query: 184 VFNLNQPGNIAKAIQGERVGTLIG 207
           V +   P N+ +A++GE VGT+I 
Sbjct: 198 VVDGRDPENLERALKGEFVGTIIE 221

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 221

>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative

 Score =  115 bits (290), Expect = 5e-32
 Identities = 64/201 (31%), Positives = 99/201 (49%), Gaps = 24/201 (11%)

Query: 16  EVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 74
           +V +VVGGG   R     A   G   +  D IG+ AT +NA+ L A +     P   +  
Sbjct: 34  KVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENF 93

Query: 75  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 134
                         A+  +  G++V+   G  +P  TTD  AAL      A++++ ATNV
Sbjct: 94  ------------EEALEAMSLGKIVV--MGGTHPGHTTDAVAALLAEFSKADLLINATNV 139

Query: 135 DGVYDDNPRRNPNARLLDTLTYQE----VTSKDL-----SVMDMTAITLCQENNIPVVVF 185
           DGVYD +P+++P+A+  D LT +E    V S  +      V+D  A  + + + I  +V 
Sbjct: 140 DGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVV 199

Query: 186 NLNQPGNIAKAIQGERVGTLI 206
           N   P N+ K ++GE VGT+I
Sbjct: 200 NGRDPENLEKVLKGEHVGTII 220

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 221

>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

 Score =  105 bits (265), Expect = 4e-28
 Identities = 57/232 (24%), Positives = 87/232 (37%), Gaps = 29/232 (12%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL-----DRSS---ADYIGMLATVMN 54
           +AR +  +   G  V +V G G        A    L      R +    D +  +   M+
Sbjct: 18  LARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMS 77

Query: 55  AIFLQATMESIGIPTRVQTAFRM---------SEVAEPYIRRRAVRHLEKGRVVIFAAGT 105
            + + A +E  GI        +                    R    LE G + I +   
Sbjct: 78  NLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFG 137

Query: 106 G--------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ 157
           G             +D+ AAL  A + A+ ++  T+VDGVY  +PR+ P+A+LL  LTY+
Sbjct: 138 GTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYE 197

Query: 158 EV---TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
           E          V+   A        IPV + N   PG +A     +  GTLI
Sbjct: 198 EAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGALA-LFTPDGGGTLI 248

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248

>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family

 Score =  103 bits (258), Expect = 3e-27
 Identities = 50/220 (22%), Positives = 79/220 (35%), Gaps = 44/220 (20%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG------------------LDRSSA 43
            +A E+A +  LGI+V +V GGG       AA                      L     
Sbjct: 20  RLAEEIAKLLALGIKVVVVSGGGGFTDKLLAAYGIEAGFVRHTAGATGLVLEAQLAAELN 79

Query: 44  DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAA 103
             +  L   + A  +   +   G+P                        LE G V +   
Sbjct: 80  RIVVSLGERLGARAVALLLSDGGLPAVRLDL---------VDTEAIKELLEAGVVPVITG 130

Query: 104 GTGN---------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL 154
             G             ++DT AAL    + A+ ++  T+VDGVY  +PR+NP+A+L+  L
Sbjct: 131 FGGENDTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKNPDAKLIPEL 190

Query: 155 TYQEVT--------SKDLSVMDMTAITLCQENNIPVVVFN 186
           +Y E          +  + V    A+   +   IPV + N
Sbjct: 191 SYDEAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230

This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230

>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 45/185 (24%)

Query: 53  MNAIFLQATMESIGIPTRVQTA----------FRMSEVAEPYIRRRAVRHLEKGRVVI-- 100
           ++A  L A + ++G+  R                 + + +    RR +R LE+G+V +  
Sbjct: 121 LSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEGKVPVVA 180

Query: 101 -FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 153
            F     +   TT      D +AA   A + A+ V   T+VDGVY  +PR  P+ARLL  
Sbjct: 181 GFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPE 240

Query: 154 LTYQEVTSKDLSVMDMT----------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVG 203
           ++Y+E        +++           A+     + IP+ + N   P            G
Sbjct: 241 ISYEE-------ALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAP---------G 284

Query: 204 TLIGG 208
           TLI  
Sbjct: 285 TLITA 289

Length = 447

>gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

 Score = 64.0 bits (157), Expect = 2e-12
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT-- 170
           D  +AL    +NA++++  ++VDG+YD NPR NP+A+L+      EV      +  M   
Sbjct: 145 DRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIP-----EVEEITDEIEAMAGG 199

Query: 171 ---------------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
                          A  +  E  IPVV+ N  +P  +   + GE VGTL 
Sbjct: 200 SGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLF 250

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR. Length = 251

>gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 108 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--S 165
           P   TD  A L    I A  ++   + DG+Y  +P++N  A  +  ++  E+  KDL   
Sbjct: 159 PPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDL 218

Query: 166 VMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
           V++   + L Q   +   V + N   PGN+ +A++GE VGT+I
Sbjct: 219 VLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII 261

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 262

>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 21/148 (14%)

Query: 74  AFRMSEVAEPYIRRRAVRHLEKGRVVIFA---AGTGNPFFTT------DTAAALRCAEIN 124
            F  + V    +  R    LE+G + + A     T     TT      D  AAL  A + 
Sbjct: 146 NFGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALK 205

Query: 125 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE---VTSKDLSVMDMTAITLCQENNIP 181
           A+     T+VDG+Y  +PR  P+AR +D ++Y+E   + S    V+    +       IP
Sbjct: 206 ADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIP 265

Query: 182 VVVFNLNQPGNIAKAIQGERVGTLIGGT 209
           +VV +   P         E  GTLI  +
Sbjct: 266 IVVKSTFNP---------EAPGTLIVAS 284

Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441

>gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function prediction only]

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 63/231 (27%), Positives = 97/231 (41%), Gaps = 34/231 (14%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRG---ASAAGNSGLD--RSSADYI----GM--LA 50
            IARE++       E  IVV GG  F G   A   G  GL    S   +      M  L 
Sbjct: 28  RIAREIS---NGKPEKLIVVHGGGSF-GHPAAKEFGLEGLKNYLSPLGFSLTHLAMLELN 83

Query: 51  TVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRH-LEKGRV------VIFAA 103
           +++    L A + ++ +   +  +     +   Y+   A++  LEKG V      V+   
Sbjct: 84  SIVVDALLDAGVRAVSVVP-ISFSTFNGRILYTYLE--AIKDALEKGFVPVLYGDVVPDD 140

Query: 104 GTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKD 163
             G    + D        E+  + V+  T+VDGVYD +P + P+ARLL  +  +      
Sbjct: 141 DNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGS 200

Query: 164 LSVMDMT--------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
               D+T        A+         V +FN N+P NI +A++GE VGT I
Sbjct: 201 GGT-DVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRALRGENVGTRI 250

Length = 252

>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 35/179 (19%)

Query: 53  MNAIFLQATMESIGIPTRVQTA---------FRMSEVAEPYIRRRAVRHL-EKGRVVI-- 100
           ++A  L A +   GI  R   A            +         R    L E G+V +  
Sbjct: 60  LSARLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVT 119

Query: 101 -FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDT 153
            F     +   TT      D +AA   A + A+ V   T+VDG+Y  +PR  P ARL+  
Sbjct: 120 GFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPE 179

Query: 154 LTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207
           ++Y E    +L+     V+   A+   ++ NIP+ V N   P         E  GTLI 
Sbjct: 180 ISYDEA--LELAYFGAKVLHPRAVEPARKANIPIRVKNTFNP---------EAPGTLIT 227

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227

>gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and metabolism]

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 18/109 (16%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVM----- 167
           DT +AL    + A++++  +++DG+YD NPR NP+A+L+  +   E+T  ++  M     
Sbjct: 152 DTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVE--EIT-PEIEAMAGGSG 208

Query: 168 ----------DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
                      + A  +     +PV++ + ++P  I  A++GE VGTL 
Sbjct: 209 SELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLF 257

Length = 369

>gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 19/122 (15%)

Query: 99  VIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE 158
           V+   G G    + D         +  E V+  T+VDGVYD  P   P+A+L+  +    
Sbjct: 136 VVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGS 192

Query: 159 VTSKDLSVM------DMT--------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 204
           +   D+         D+T         +       I V +FN ++P N+ +A+ G  +GT
Sbjct: 193 LE--DILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKPENLYRALLGNFIGT 250

Query: 205 LI 206
            I
Sbjct: 251 RI 252

Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 252

>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 16/110 (14%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSV------ 166
           DT +AL    + A++++  T+VDG+YD +PR NP+A+L+  +  +E+T   L V      
Sbjct: 146 DTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVV--EEITDLLLGVAGDSGS 203

Query: 167 ------M--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 208
                 M   + A  L     +PV++ + ++P  IA A++G  VGTL   
Sbjct: 204 SVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHA 253

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family [Amino acid biosynthesis, Glutamate family]. Length = 363

>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

 Score = 54.8 bits (133), Expect = 3e-09
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 14/107 (13%)

Query: 91  RHLEKGRVVIFAAG----TGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDD 140
             LE+G VV+  AG      +   TT      DT A    A + A+     T+VDGVY  
Sbjct: 121 EALEEGDVVV-VAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTA 179

Query: 141 NPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVV 184
           +PR  P AR LD ++Y E+    S    V+   ++ L ++ N+P+ V
Sbjct: 180 DPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRV 226

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239

>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 88  RAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVY 138
           R +  LE+G VV+   F   T N   TT      DT AA     + AE V   T+VDG+ 
Sbjct: 125 RILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIM 184

Query: 139 DDNPRRNPNARLLDTLTYQEV 159
             +PR   +ARLLD ++Y EV
Sbjct: 185 TADPRIVEDARLLDVVSYNEV 205

Length = 403

>gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional

 Score = 54.3 bits (132), Expect = 7e-09
 Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 22/111 (19%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM--- 169
           DT +AL    + A++++  T+VDG+Y  +PR+NP+A+L+      EV      +  M   
Sbjct: 154 DTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIP-----EVEEITDELEAMAGG 208

Query: 170 --------------TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
                          A  +     IPVV+ +  +P  + + + GE VGTL 
Sbjct: 209 AGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLF 259

Length = 372

>gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 22/133 (16%)

Query: 87  RRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGV 137
           ++ +  L++G VV+   F   T +   TT      DT AA   A +NAE V   T+VDG+
Sbjct: 122 KKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGI 181

Query: 138 YDDNPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 194
              +PR  PNAR+LD ++Y EV     +   V+   A+ +  + NIP+ +          
Sbjct: 182 MTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRI---------- 231

Query: 195 KAIQGERVGTLIG 207
           ++   E  GTLI 
Sbjct: 232 RSTMSENPGTLIT 244

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244

>gnl|CDD|239789 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT---YQEVTSKDLSVMDM 169
           D+ AA    E+ A++++  ++VDG+YD  P  + +A+L+ T      Q +T    S +  
Sbjct: 181 DSLAARLAVELKADLLILLSDVDGLYDGPP-GSDDAKLIHTFYPGDQQSITFGTKSRVGT 239

Query: 170 -------TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 205
                   A     +    VV+ N      I K ++G++VGT 
Sbjct: 240 GGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTF 282

G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Length = 284

>gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)

Query: 58  LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAA 117
           L A  ES      +Q   R+++ A+  I +  +     G  V+   G       +DT+AA
Sbjct: 160 LSARCESEYADALLQK--RLADGAQLIITQGFIARNAHGETVLLGRGG------SDTSAA 211

Query: 118 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMDMTAITL 174
              A++ A      T+V G++  NP   P+ARLL  L Y   QE+ +    V+    I  
Sbjct: 212 YFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPP 271

Query: 175 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
            +  NIP+VV +  +P         E  GTLI
Sbjct: 272 ARRANIPMVVRSTERP---------ELSGTLI 294

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 295

>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 16/106 (15%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS-----VM 167
           D +AA+  A ++A+     T+VDGVY  +PR  P+ARLL +L+YQE    +LS     V+
Sbjct: 208 DYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAM--ELSYFGAKVL 265

Query: 168 DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNST 213
               I    +  IP ++ N   P         +  GTLIG   +  
Sbjct: 266 HPRTIAPIAQFQIPCLIKNTFNP---------QAPGTLIGAESDED 302

Length = 819

>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

 Score = 50.6 bits (122), Expect = 9e-08
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 16/108 (14%)

Query: 91  RHLEKGRVVIFA-----AGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYD 139
             LE+G VVI A        G+   TT      DT+A    A + A+     T+VDGVY 
Sbjct: 121 ELLEEGDVVIVAGFQGINEDGD--ITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYT 178

Query: 140 DNPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVV 184
            +PR  P AR LD ++Y E+    S    V+   ++ L ++  +P+ V
Sbjct: 179 ADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRV 226

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239

>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 38/192 (19%)

Query: 42  SADYIGMLATVMNAIFLQATMESIGIPTRVQTA-------------FRMSEVAEPYIRRR 88
           S DYI      ++A  L   +  +GI +   T               R        ++ R
Sbjct: 121 SRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKER 180

Query: 89  AVRHLEKGRV-VI--FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYD 139
               L++G + V+  F   T     TT      D +AA+  A ++A+ +   T+VDGV  
Sbjct: 181 LEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMT 240

Query: 140 DNPRRNPNARLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIA 194
            +PR  P AR++  ++Y E    +LS     V+    I    E  IPV V N   P    
Sbjct: 241 TDPRIVPEARVIPKISYIEAM--ELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNP---- 294

Query: 195 KAIQGERVGTLI 206
                E  GTLI
Sbjct: 295 -----EFPGTLI 301

Length = 465

>gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 16/100 (16%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS-----VM 167
           D +AAL  A ++AE V   T+VDGVY  +PR+ P+ARLL  L+Y E  + +L+     V+
Sbjct: 205 DYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDE--AMELAYFGAKVL 262

Query: 168 DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207
               I      NIP+ + N   P         E  GTLI 
Sbjct: 263 HPRTIQPAIRKNIPIFIKNTFNP---------EAPGTLIS 293

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293

>gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 24/133 (18%)

Query: 88  RAVRHLEKGRVVI--FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYD 139
           +A        +V+  F A       TT      D +AA+  A ++A+ V   T+VDGVY 
Sbjct: 173 KAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYS 232

Query: 140 DNPRRNPNARLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIA 194
            +PR+  +ARLL +L+YQE  + +LS     V+    I    + NIP+++ N   P    
Sbjct: 233 ADPRKVKDARLLPSLSYQE--AMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNP---- 286

Query: 195 KAIQGERVGTLIG 207
                E  GTLI 
Sbjct: 287 -----EAPGTLIS 294

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Length = 294

>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 112 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMD 168
           +DT+AA   A++ A  V   T+V G++  NP+  P+ARLL  L Y   QE+ +    V+ 
Sbjct: 215 SDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLH 274

Query: 169 MTAITLCQENNIPVVVFNLNQPGNIAKAIQGE 200
             +I  C++  IP+ + +  +P     +I G+
Sbjct: 275 PRSIKPCRDAGIPMAILDTERPDLSGTSIDGD 306

Length = 861

>gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 32/186 (17%)

Query: 38  LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF-------------RMSEVAEPY 84
           L   S DYI      ++A    A + S+GI  R                  R        
Sbjct: 113 LTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYER 172

Query: 85  IRRRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVD 135
           +R+R +  LE G++ +   F   T +   TT      D +A +  A ++A+ +    +VD
Sbjct: 173 VRKRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVD 232

Query: 136 GVYDDNPRRNPNARLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVV---FNL 187
           GV   +PR  P AR +  L+Y E    +L+     V+    +    E  IPV V   FN 
Sbjct: 233 GVMTADPRIVPEARTIPRLSYAEAM--ELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNP 290

Query: 188 NQPGNI 193
             PG +
Sbjct: 291 EAPGTL 296

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298

>gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 16/107 (14%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS------- 165
           D  +A+    + A++++  +++DG+YD NPR NP+A+L   +T  E+T + L+       
Sbjct: 157 DRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVT--EITEEILALAGGAGS 214

Query: 166 -------VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 205
                  V  + A     E  I +V+ N   P +I   ++GE +GTL
Sbjct: 215 KFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTL 261

Length = 266

>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 12/108 (11%)

Query: 109 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ----EVTSKDL 164
           F+  D+ AAL   E+ A++++  ++V+G+YD  P  + +++L+DT   +    E+T    
Sbjct: 166 FWDNDSLAALLALELKADLLILLSDVEGLYD-GPPSDDDSKLIDTFYKEKHQGEITFGTK 224

Query: 165 SVMDMTAITL-------CQENNIPVVVFNLNQPGNIAKAIQGERVGTL 205
           S +    +T              PV++ +   P NI K ++G++VGTL
Sbjct: 225 SRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTL 272

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region [Amino acid biosynthesis, Glutamate family]. Length = 715

>gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 15/121 (12%)

Query: 109 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY----QEVTSKDL 164
           F+  D+ AAL   E+ A++++  ++V+G+Y   P  +P+++L+ T        E+T  + 
Sbjct: 174 FWDNDSLAALLALELKADLLILLSDVEGLYT-GPPSDPSSKLIHTYIKEKHQDEITFGEK 232

Query: 165 SVMD---MTAITLCQEN----NIPVVVFNLNQPGNIAKAIQGERVGTLI---GGTWNSTV 214
           S +    MTA      N     IPVV+ +     NI K ++GERVGTL       W  + 
Sbjct: 233 SRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQDAHLWAPSK 292

Query: 215 S 215
            
Sbjct: 293 E 293

Length = 718

>gnl|CDD|224965 COG2054, COG2054, Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 34/219 (15%)

Query: 2   AIAREVASVTRLGIEVAIVVGGG---NIFRGASAAGNSGLDRSSADYIGMLATVMNAIFL 58
             A    ++  L   + IV GGG   ++ R        GL  S++ ++ + A      +L
Sbjct: 14  RAAAVKEALENLQRSILIVPGGGIFADLVRKIDEEF--GLSDSASHWMAITAMDQYGFYL 71

Query: 59  QATMESIGIPTRVQTAFRMSEVAE----PYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDT 114
                     T  +    +   A+    PY   R    L     V           T+D+
Sbjct: 72  ADLASRFVTDTVTEPEDGIKPDAKAVLLPYRLLRKTDPLPHSWEV-----------TSDS 120

Query: 115 AAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL----SVMDMT 170
            +    A+  A  V+KAT+VDG+Y++    +P  +L+     +E+ + DL    + +D  
Sbjct: 121 ISVWIAAKAGATEVVKATDVDGIYEE----DPKGKLV-----REIRASDLKTGETSVDPY 171

Query: 171 AITLCQENNIPVVVFNLNQPGNIAKAIQG-ERVGTLIGG 208
              L  +  +   V N  +P  +  A++G E VGTLI G
Sbjct: 172 LPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG 210

Length = 212

>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 22/146 (15%)

Query: 75  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTG---NPFFTT------DTAAALRCAEINA 125
           F  +++       R +  LE+G +V+ A   G     + TT      D  AAL  A + A
Sbjct: 108 FGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKA 167

Query: 126 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE---VTSKDLSVMDMTAITLCQENNIPV 182
           + V   T+V GVY  +PR    A+ +D ++Y+E   + +    V+    +     + +P+
Sbjct: 168 DRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPI 227

Query: 183 VVFNLNQPGNIAKAIQGERVGTLIGG 208
            V +   P            GTLI  
Sbjct: 228 EVRSSFDPEE----------GTLITN 243

This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401

>gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 22/110 (20%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT-- 170
           D  +A+  A  +A+ ++  +++DG+YD NPR NP+A+L+     ++VT  +  +  M   
Sbjct: 150 DNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLI-----KQVTEINAEIYAMAGG 204

Query: 171 ---------------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 205
                          A  +   + I   + N        + ++G+  GT 
Sbjct: 205 AGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQNPGTY 254

Length = 368

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 27/90 (30%)

Query: 88  RAVRHLEKGRVVIFAAG------TGNPFFTT------DT-----AAALR--CAEINAEVV 128
           R  RHL+ G+VV+  AG      + N   TT      DT     AAAL     EI     
Sbjct: 120 RIQRHLDAGKVVV-VAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIY---- 174

Query: 129 LKATNVDGVYDDNPRRNPNARLLDTLTYQE 158
              T+V GV   +PR  P A+L+D ++  E
Sbjct: 175 ---TDVPGVLTTDPRLVPEAQLMDEISCDE 201

Length = 587

>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 12/104 (11%)

Query: 93  LEKGRVVIFAAGTG---NPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPR 143
           LE+ ++VI A   G   N   TT      DT A      +NA+     T+VDGVY  +PR
Sbjct: 125 LEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPR 184

Query: 144 RNPNARLLDTLTY---QEVTSKDLSVMDMTAITLCQENNIPVVV 184
              NAR LD + +   + +  K   V+ + ++    ++++P+ V
Sbjct: 185 VVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRV 228

Length = 392

>gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 20/136 (14%)

Query: 44  DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV------AEPYIR------RRAVR 91
           DYI      ++A+     +E+ GI  +V   + + E       A   I+      +    
Sbjct: 103 DYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYE 162

Query: 92  HLEKGRVVIFAAGTG--NPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPR 143
            LE+GRV +     G  N F  T      D +A      +NA+ VL  ++V+G+Y  +P+
Sbjct: 163 LLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPK 222

Query: 144 RNPNARLLDTLTYQEV 159
             P+ARL+  L+Y E 
Sbjct: 223 LVPSARLIPYLSYDEA 238

Length = 341

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 14/86 (16%)

Query: 85  IRRRAVRH-LEKGRVVIFA-----AGTGNPFFTT------DTAAALRCAEINAEVVLKAT 132
           I    +R  L++G VV+ A        G    TT      DT A    A + A+     T
Sbjct: 116 IDPSRIREALDEGDVVVVAGFQGVDEDGE--ITTLGRGGSDTTAVALAAALKADECEIYT 173

Query: 133 NVDGVYDDNPRRNPNARLLDTLTYQE 158
           +VDGVY  +PR  P AR LD ++Y+E
Sbjct: 174 DVDGVYTTDPRIVPKARKLDKISYEE 199

Length = 404

>gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 16/80 (20%)

Query: 132 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT-----AITLCQENNIPVVVFN 186
           T+VDG+Y  NPR   N + +  +TY+E+  ++LS    +     A+    E  IP+ + N
Sbjct: 219 TDVDGIYAANPRIVANPKPISEMTYREM--RELSYAGFSVFHDEALIPAIEAGIPINIKN 276

Query: 187 LNQPGNIAKAIQGERVGTLI 206
            N P         E  GTLI
Sbjct: 277 TNHP---------EAPGTLI 287

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. Length = 288

>gnl|CDD|239773 cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 13/99 (13%)

Query: 111 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPR--RNPNARLLDTLTYQEVTSKDLSVMD 168
           T+D+ AA    ++ A+ ++  T+VDG+Y+ + +      A  L             + +D
Sbjct: 115 TSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAEL----------LGETSVD 164

Query: 169 MTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLI 206
                L  +  I   V N + P  +  A++G   VGT I
Sbjct: 165 PAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203

Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily. Length = 203

>gnl|CDD|239782 cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP--NARLLDTLTYQEVTSKDLSVMDMT 170
           D AA      +NA++VL  ++V GV D + +     NA+    L  Q V +  + V    
Sbjct: 158 DQAATAIAQLLNADLVL-LSDVSGVLDADKQLISELNAKQAAELIEQGVITDGMIVKVNA 216

Query: 171 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
           A+   Q     + + +   P  +   + GE VGT I
Sbjct: 217 ALDAAQSLRRGIDIASWQYPEQLTALLAGEPVGTKI 252

There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). Length = 252

>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 19/64 (29%), Positives = 40/64 (62%), Gaps = 3/64 (4%)

Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE--VTSK-DLSVMDMTAITLCQENN 179
           +N+++V   ++V+G++  +P+  P+ARL+  L+Y+E  + +K  +  +   A  L +E  
Sbjct: 192 LNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYK 251

Query: 180 IPVV 183
           IPV+
Sbjct: 252 IPVL 255

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between [Amino acid biosynthesis, Aspartate family]. Length = 327

>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 20/102 (19%)

Query: 112 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT------SKDLS 165
           +D +AAL    ++AE +   T+V G+Y  +PR  P AR +  +++ E        +K L 
Sbjct: 203 SDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLH 262

Query: 166 VMDMT-AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
              +  AI      NIPV V +   P         E  GTLI
Sbjct: 263 PATLLPAI----RKNIPVFVGSSKDP---------EAGGTLI 291

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PRK14558	231	pyrH uridylate kinase; Provisional	100.0
PRK00358	231	pyrH uridylate kinase; Provisional	100.0
PRK14556	249	pyrH uridylate kinase; Provisional	100.0
COG0528	238	PyrH Uridylate kinase [Nucleotide transport and me	100.0
cd04239	229	AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik	100.0
TIGR02075	233	pyrH_bact uridylate kinase. This protein, also cal	100.0
COG0263	369	ProB Glutamate 5-kinase [Amino acid transport and	100.0
cd04254	231	AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi	100.0
PRK14557	247	pyrH uridylate kinase; Provisional	100.0
PRK13402	368	gamma-glutamyl kinase; Provisional	100.0
PRK12314	266	gamma-glutamyl kinase; Provisional	100.0
PTZ00489	264	glutamate 5-kinase; Provisional	100.0
cd04253	221	AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP	100.0
TIGR02076	221	pyrH_arch uridylate kinase, putative. This family	100.0
cd02115	248	AAK Amino Acid Kinases (AAK) superfamily, catalyti	100.0
cd04256	284	AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase	100.0
cd04242	251	AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K	100.0
PRK05429	372	gamma-glutamyl kinase; Provisional	100.0
TIGR01027	363	proB glutamate 5-kinase. Bacterial ProB proteins h	100.0
cd04261	239	AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina	100.0
cd04246	239	AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina	100.0
cd04241	252	AAK_FomA-like AAK_FomA-like: This CD includes a fo	100.0
cd04255	262	AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th	100.0
cd04234	227	AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK)	100.0
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	99.98
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	99.98
PRK08841	392	aspartate kinase; Validated	99.98
COG1608	252	Predicted archaeal kinase [General function predic	99.97
KOG1154	285	consensus Gamma-glutamyl kinase [Amino acid transp	99.97
PRK14058	268	acetylglutamate/acetylaminoadipate kinase; Provisi	99.97
cd04260	244	AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase	99.97
COG0548	265	ArgB Acetylglutamate kinase [Amino acid transport	99.97
CHL00202	284	argB acetylglutamate kinase; Provisional	99.97
PLN02512	309	acetylglutamate kinase	99.97
cd04244	298	AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina	99.97
PRK06635	404	aspartate kinase; Reviewed	99.97
PRK07431	587	aspartate kinase; Provisional	99.97
TIGR01092	715	P5CS delta l-pyrroline-5-carboxylate synthetase. T	99.96
cd04240	203	AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin	99.96
PRK08210	403	aspartate kinase I; Reviewed	99.96
PRK00942	283	acetylglutamate kinase; Provisional	99.96
cd04259	295	AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super	99.96
cd04250	279	AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase	99.96
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	99.96
cd04238	256	AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate	99.96
cd04251	257	AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina	99.96
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	99.96
PRK06291	465	aspartate kinase; Provisional	99.96
cd04247	306	AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa	99.96
cd04245	288	AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki	99.95
cd04249	252	AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina	99.95
cd04257	294	AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa	99.95
PRK08373	341	aspartate kinase; Validated	99.95
PRK12353	314	putative amino acid kinase; Reviewed	99.95
cd04235	308	AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot	99.95
cd04243	293	AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina	99.95
TIGR00746	310	arcC carbamate kinase. The seed alignment for this	99.94
PRK09084	448	aspartate kinase III; Validated	99.94
PRK09034	454	aspartate kinase; Reviewed	99.94
cd04258	292	AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki	99.94
PRK05925	440	aspartate kinase; Provisional	99.94
PF00696	242	AA_kinase: Amino acid kinase family Match to Gluta	99.94
TIGR02078	327	AspKin_pair Pyrococcus aspartate kinase subunit, p	99.94
cd04237	280	AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG)	99.93
TIGR01890	429	N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi	99.93
TIGR00761	231	argB acetylglutamate kinase. This model describes	99.93
cd04252	248	AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam	99.93
PLN02551	521	aspartokinase	99.93
PRK12352	316	putative carbamate kinase; Reviewed	99.93
PRK12454	313	carbamate kinase-like carbamoyl phosphate syntheta	99.92
cd04248	304	AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S	99.92
PRK09181	475	aspartate kinase; Validated	99.92
PRK05279	441	N-acetylglutamate synthase; Validated	99.92
COG2054	212	Uncharacterized archaeal kinase related to asparto	99.91
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	99.91
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	99.91
cd04236	271	AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA	99.91
PRK12686	312	carbamate kinase; Reviewed	99.9
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	99.9
PRK12354	307	carbamate kinase; Reviewed	99.89
PRK04531	398	acetylglutamate kinase; Provisional	99.87
PRK09411	297	carbamate kinase; Reviewed	99.86
PLN02825	515	amino-acid N-acetyltransferase	99.86
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	99.84
COG0549	312	ArcC Carbamate kinase [Amino acid transport and me	99.74
KOG2436	520	consensus Acetylglutamate kinase/acetylglutamate s	98.3

>PRK14558 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=8.7e-41  Score=274.33  Aligned_cols=204  Identities=42%  Similarity=0.734  Sum_probs=176.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc-cccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR-MSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~-~~~~   80 (219)
                      +++++|+++++.|+++|||||||+|++++...   +++....+.+++.++++|..++...|.++|+++..+.... ..++
T Consensus        27 ~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~---~~~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~~~~~~~~  103 (231)
T PRK14558         27 YLVNEIKSVVEYGFKIGIVIGAGNLFRGVELK---ELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSV  103 (231)
T ss_pred             HHHHHHHHHHHCCCeEEEEECccHHHHHHhcc---CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccccccchh
Confidence            68999999999999999999999998876632   3555567888888899998877899999999987655331 1111


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                      . ++....+..+|+.|.|||++|+.+.++++||++|+++|..++|+++++||||||||++||+.+|++++++++++.|+.
T Consensus       104 ~-~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~  182 (231)
T PRK14558        104 E-PINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAI  182 (231)
T ss_pred             h-hhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHH
Confidence            1 111244567899999999999888889999999999999999999999999999999999999999999999999988


Q ss_pred             hCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          161 SKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       161 ~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      ++|..++|+.++++|.++|++++|+|+++|+.+.+++.|+..||+|.++
T Consensus       183 ~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~  231 (231)
T PRK14558        183 KMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVPD  231 (231)
T ss_pred             HcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCCC
Confidence            8888899999999999999999999999999999999999999999763

>PRK00358 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=1.3e-40  Score=273.39  Aligned_cols=205  Identities=65%  Similarity=1.054  Sum_probs=178.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|+++++.|+++|||||||++++++... ..++++...+.++++++++|+.+++..|.++|+++..+++.......
T Consensus        27 ~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~~  105 (231)
T PRK00358         27 RIAEEIKEVVELGVEVAIVVGGGNIFRGYIGA-AAGMDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVA  105 (231)
T ss_pred             HHHHHHHHHHHCCCeEEEEECCCHHHHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhccccc
Confidence            67999999999999999999999999887532 23566666788999999999988889999999999765554433333


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  161 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  161 (219)
                      .++..+.+.++|++|.|||++++.+.++.+||++|+++|.+|+|++|+++|||||||++||+.+|++++|++++++|+.+
T Consensus       106 ~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~  185 (231)
T PRK00358        106 EPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLE  185 (231)
T ss_pred             CcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHH
Confidence            33334556688999999999987777889999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      .|.+.+|++++++|.++|++++|+|+++|+.|.++++|+..||+|.
T Consensus       186 ~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~  231 (231)
T PRK00358        186 KGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS  231 (231)
T ss_pred             cCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence            7777899999999999999999999999999999999998999983

>PRK14556 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=1.1e-40  Score=272.83  Aligned_cols=207  Identities=42%  Similarity=0.697  Sum_probs=187.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|+++.+.|+++.||.|||.++|+.......|+++...|.++|+++++|+.+++.+|.+.|+++..+++.....+.
T Consensus        42 ~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa~~~~~~~  121 (249)
T PRK14556         42 PIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLL  121 (249)
T ss_pred             HHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccCcCC
Confidence            68999999999999999999999999984432114688889999999999999999999999999999988887766666


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  161 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  161 (219)
                      ++|..+++.++|+.|.|+|+.++.|.++++||++|+++|..++||.|+++|||||||++||+++|++++++++++.|..+
T Consensus       122 e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~  201 (249)
T PRK14556        122 KVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVS  201 (249)
T ss_pred             CCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcc
Confidence            77766777889999999999998889999999999999999999999999999999999999999999999999988776


Q ss_pred             CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      .+..+|+..|++.+.++|+|++|+|+++|+.|.+++.|+..||+|.-
T Consensus       202 ~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~  248 (249)
T PRK14556        202 KELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL  248 (249)
T ss_pred             cchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence            66678899999999999999999999999999999999999999963

>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]

Probab=100.00  E-value=3.2e-40  Score=263.84  Aligned_cols=206  Identities=61%  Similarity=0.976  Sum_probs=192.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|+++.+.|+++.||.|||.++|++.... .|+++...|+|+++++++|+.+++.+|.+.|+++..++....+.+.
T Consensus        32 ~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~-~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai~~~~~~  110 (238)
T COG0528          32 RIANEIKELVDLGVEVAVVVGGGNIARGYIGAA-AGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVA  110 (238)
T ss_pred             HHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHH-cCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccccCcccc
Confidence            689999999999999999999999999987665 4899999999999999999999999999999999988877766666


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeec-cCccccCCCCCCCCCcccccccHHHHh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltD-V~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                      ++|..++..++|+.|.|+|+.+..++|+.++|+.|++.|..++||.++..|+ |||||++||+++|+|+.++++||.|+.
T Consensus       111 e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l  190 (238)
T COG0528         111 EPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVL  190 (238)
T ss_pred             CccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHH
Confidence            7777777889999999999999888999999999999999999999999995 999999999999999999999999999


Q ss_pred             hCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          161 SKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       161 ~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      +.+..+||+.|+..+.++++|++++|.++++++.+++.|+..||.|.+
T Consensus       191 ~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~  238 (238)
T COG0528         191 KIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP  238 (238)
T ss_pred             HhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence            888899999999999999999999999999999999999999999863

>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

Probab=100.00  E-value=1e-39  Score=267.61  Aligned_cols=205  Identities=63%  Similarity=1.001  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|+++++.|+++|||||||++++++.... +++++...+++++.++++|+.+++..|.++|+++..+++.+.....
T Consensus        25 ~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~  103 (229)
T cd04239          25 EIAREIKEVVDLGVEVAIVVGGGNIARGYIAAA-RGMPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVA  103 (229)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCChHHhhHHHhh-cCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhh
Confidence            578899999999999999999999877655432 3456666788999999999999999999999999876666443332


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  161 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  161 (219)
                      .++-.+.+.++++.|.|||++|+.|.++++||++|+++|..++|++|+|+|||||||++||+.+|++++|++++++|+.+
T Consensus       104 ~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~  183 (229)
T cd04239         104 EPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLK  183 (229)
T ss_pred             ccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHH
Confidence            22212345678999999999999888899999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      +..+.+|+.+++.+.+.|++++|+|+++|+.+.++++|+..||+|.
T Consensus       184 ~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~  229 (229)
T cd04239         184 KGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE  229 (229)
T ss_pred             HhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence            7668889999999999999999999999999999999998999884

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als

>TIGR02075 pyrH_bact uridylate kinase

Probab=100.00  E-value=2.4e-38  Score=260.10  Aligned_cols=205  Identities=56%  Similarity=0.981  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|+++...++++|||||||++..++. ++.++++....+++++.++++|..++...|.++|+++..+++.+.....
T Consensus        28 ~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~-a~~~~~~~~~~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~~~~  106 (233)
T TIGR02075        28 RIANEIKELVKMGIEVGIVIGGGNIFRGVS-AKELGIDRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQIC  106 (233)
T ss_pred             HHHHHHHHHHhCCCeEEEEECCCHHHHHHH-HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCCCCc
Confidence            578999999888899999999999876654 3334566556788999999999998889999999999887776543222


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeec-cCccccCCCCCCCCCcccccccHHHHh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltD-V~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                      ..+..+.+.++|+.|.|||++++.|.++++||++|+++|..++||+|+++|| |||||++||+.+|+++++++++++|+.
T Consensus       107 ~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~  186 (233)
T TIGR02075       107 ESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEAL  186 (233)
T ss_pred             cccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHH
Confidence            2232345667899999999999878889999999999999999999999999 999999999999999999999999987


Q ss_pred             hCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          161 SKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       161 ~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      +.+...+|+++++.|.++|++++|+|+.+|+.|.++++|+.+||+|.
T Consensus       187 ~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~  233 (233)
T TIGR02075       187 KKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS  233 (233)
T ss_pred             hcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence            77777889999999999999999999999999999999999999984

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.

>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-38  Score=266.04  Aligned_cols=205  Identities=26%  Similarity=0.413  Sum_probs=174.3

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcC--hHHHHHHHHHHHHHHHH---HHHHHhcCCCeeEecccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS--SADYIGMLATVMNAIFL---QATMESIGIPTRVQTAFR   76 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~---~~~l~~~gi~a~~~~~~~   76 (219)
                      .++++|++|++.|+++|||+ +|+++.|+..++   ++++  .....|++|+..+..|+   .+.|..+|+.+ +|.+++
T Consensus        32 ~l~~~ia~L~~~G~eVilVS-SGAiaaG~~~Lg---~~~rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v-~QiLLT  106 (369)
T COG0263          32 ELVRQVAALHKAGHEVVLVS-SGAIAAGRTRLG---LPKRPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKV-GQILLT  106 (369)
T ss_pred             HHHHHHHHHHhCCCEEEEEc-cchhhhChhhcC---CCCCCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCee-eEEEee
Confidence            58999999999999999998 799999988876   5544  45667888887777654   66799999986 488888


Q ss_pred             cccccc--hHHHH--HHHHHHhCCCEEEEeCC-----CCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCC
Q 027731           77 MSEVAE--PYIRR--RAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN  147 (219)
Q Consensus        77 ~~~~~~--~~~~~--~~~~~l~~g~ipIv~g~-----~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~  147 (219)
                      ..|+.+  +|.|.  .+..+|+.|.|||+|++     .+..|+|||++|+++|.+++||.|+++||+||+||+||+.+|+
T Consensus       107 r~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pd  186 (369)
T COG0263         107 RDDFSDRRRYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPD  186 (369)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHCCceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCC
Confidence            888764  46653  35579999999999997     4578999999999999999999999999999999999999999


Q ss_pred             CcccccccHH--HHhh--------CCCCCc--hHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCC
Q 027731          148 ARLLDTLTYQ--EVTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN  211 (219)
Q Consensus       148 a~~i~~i~~~--e~~~--------~g~~~~--k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~  211 (219)
                      |++|++++..  |+..        +|+++|  |+.|++.|.++|++++|++|.+|+.+.+++.++..||+|.+...
T Consensus       187 Ak~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~GT~F~~~~~  262 (369)
T COG0263         187 AKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLFEPQAK  262 (369)
T ss_pred             CeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCCccEEecCCc
Confidence            9999987642  3432        355555  99999999999999999999999999999999999999997653

>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=100.00  E-value=6.7e-38  Score=257.16  Aligned_cols=205  Identities=70%  Similarity=1.100  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|+++...++++|||||||++.++... ..++....+.++++++++++|..++...|.++|+++..+++.+.....
T Consensus        27 ~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~-~~~~~~~~~~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~~  105 (231)
T cd04254          27 RIAREIKEVVDLGVEVAIVVGGGNIFRGASA-AEAGMDRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVA  105 (231)
T ss_pred             HHHHHHHHHHHCCCcEEEEECCCcccccchh-hhcCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhhh
Confidence            6788999988888999999999998544322 224455556788888999999988889999999999887766532211


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  161 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  161 (219)
                      ..+..+.+.++|+.|.|||++++.|.+..++|++|+++|.+|+|++++++|||||||++||+.+|+++++++++++|+.+
T Consensus       106 ~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~  185 (231)
T cd04254         106 EPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLS  185 (231)
T ss_pred             cccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHh
Confidence            11111345678999999999988778889999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      .|...+|+++++.|.++|++++|+|+.+|++|.++++|+..||+|+
T Consensus       186 ~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~  231 (231)
T cd04254         186 KGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS  231 (231)
T ss_pred             cchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence            7777899999999999999999999999999999999998999984

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be

>PRK14557 pyrH uridylate kinase; Provisional

Probab=100.00  E-value=2.8e-37  Score=254.75  Aligned_cols=208  Identities=44%  Similarity=0.772  Sum_probs=173.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhc-CCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESI-GIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-gi~a~~~~~~~~~~~   80 (219)
                      +++++|+++.+.|++++||||||++++++ .++.+++++...|.++++++++|+.++..+|+.. +..+..++.......
T Consensus        31 ~~a~~i~~~~~~g~~vvVVvGgGn~~rg~-~a~~~~~~~~~~D~ig~~g~~lna~ll~~~l~~~~~~~~~i~t~~~~~~~  109 (247)
T PRK14557         31 HIANEILSIVDLGIEVSIVIGGGNIFRGH-LAEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAV  109 (247)
T ss_pred             HHHHHHHHHHHcCCeEEEEECCcHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhhCCceeEEeccccccc
Confidence            57899999999999999999999876543 2333457777789999999999999999899874 666543433322222


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEee-eccCccccCCCCCCCCCcccccccHHHH
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA-TNVDGVYDDNPRRNPNARLLDTLTYQEV  159 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liil-tDV~Gv~~~dP~~~~~a~~i~~i~~~e~  159 (219)
                      .+++...++.+.|++|.|||+.|+.|.++.++|++|+++|.+++||+|+++ |||||||++||+.+|+|++|+++++.|+
T Consensus       110 ~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~  189 (247)
T PRK14557        110 AEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDV  189 (247)
T ss_pred             cchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhh
Confidence            233333456677999999999999888999999999999999999999999 5999999999999999999999999887


Q ss_pred             hhCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          160 TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       160 ~~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      ...+...|+++|+++|.++|++++|+|+++|+.|.++++|+..||+|.+..
T Consensus       190 ~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~  240 (247)
T PRK14557        190 VRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA  240 (247)
T ss_pred             cccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCc
Confidence            544555789999999999999999999999999999999999999998754

>PRK13402 gamma-glutamyl kinase; Provisional

Probab=100.00  E-value=7e-35  Score=252.41  Aligned_cols=209  Identities=20%  Similarity=0.292  Sum_probs=160.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhcc-CCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN-SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|++++++|+++||||||| ++.+...++. .+.+....+.+...+......++...|+++|+++. |...+..++
T Consensus        31 ~la~~I~~l~~~G~~vvlVsSGa-va~G~~~l~~~~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~a-qvLlT~~d~  108 (368)
T PRK13402         31 GLVQQIVYLKDQGHQVVLVSSGA-VAAGYHKLGFIDRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAA-QLLLTHGDL  108 (368)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCh-hhcCccccCCCCCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEE-EEEEecchh
Confidence            58899999999999999999654 6556554442 11111122222223333333456789999999986 444555565


Q ss_pred             cc--hHH--HHHHHHHHhCCCEEEEeCC-----CCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCccc
Q 027731           81 AE--PYI--RRRAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL  151 (219)
Q Consensus        81 ~~--~~~--~~~~~~~l~~g~ipIv~g~-----~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i  151 (219)
                      .+  +|.  +..+..+|+.|.|||++++     .+..|++||++|+++|.+++||.|+|+|||||||++||+.+|++++|
T Consensus       109 ~~~~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I  188 (368)
T PRK13402        109 RDRERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLI  188 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEE
Confidence            42  343  3445578999999999974     34678999999999999999999999999999999999999999999


Q ss_pred             ccccH--HHHhh--------CCCCCc--hHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCCC
Q 027731          152 DTLTY--QEVTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS  212 (219)
Q Consensus       152 ~~i~~--~e~~~--------~g~~~~--k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~~  212 (219)
                      +++++  .|+..        .|+++|  |++|++.|.++|++++|+|+..|+.|.+++.|+..||+|.+....
T Consensus       189 ~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~  261 (368)
T PRK13402        189 KQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQNPGTYFTPEEKP  261 (368)
T ss_pred             EEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhcCCCCceEEecCCCC
Confidence            99986  45432        234444  889999999999999999999999999999999999999876544

>PRK12314 gamma-glutamyl kinase; Provisional

Probab=100.00  E-value=1.2e-34  Score=242.17  Aligned_cols=204  Identities=23%  Similarity=0.270  Sum_probs=157.0

Q ss_pred             HHHHHHHHHHHCCCeEEEE-ECCchHHHhHHHhccCCCCcChHHHHHHHH---HHHHHHHHHHHHHhcCCCeeEeccccc
Q 027731            2 AIAREVASVTRLGIEVAIV-VGGGNIFRGASAAGNSGLDRSSADYIGMLA---TVMNAIFLQATMESIGIPTRVQTAFRM   77 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV-~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~gi~a~~~~~~~~   77 (219)
                      +++++|++++++|+++||| ||++++++  ..++....+. .....++++   ......++..+|+++|+++. |...+.
T Consensus        35 ~~~~~I~~~~~~g~~vvlV~Sga~~~g~--~~l~~~~~~~-~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~~-q~llT~  110 (266)
T PRK12314         35 QLVFVISDLMNKGKEVILVSSGAIGAGL--TKLKLDKRPT-SLAEKQALAAVGQPELMSLYSKFFAEYGIVVA-QILLTR  110 (266)
T ss_pred             HHHHHHHHHHHCCCeEEEEeeCcccccc--eeeccccCCC-CHHHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-EEEEec
Confidence            6899999999999999987 55566644  4444222221 223344443   45555677889999999874 555665


Q ss_pred             ccccch--HHH--HHHHHHHhCCCEEEEeCC-----CCC--CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCC
Q 027731           78 SEVAEP--YIR--RRAVRHLEKGRVVIFAAG-----TGN--PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP  146 (219)
Q Consensus        78 ~~~~~~--~~~--~~~~~~l~~g~ipIv~g~-----~g~--~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~  146 (219)
                      .++.++  +.+  ..+.++|+.|+|||++++     .+.  .+++||++|+++|.+++||+|+|+|||||||++||+.+|
T Consensus       111 ~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~  190 (266)
T PRK12314        111 DDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINP  190 (266)
T ss_pred             ccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCC
Confidence            566533  222  334578899999999974     222  378999999999999999999999999999999999999


Q ss_pred             CCcccccccH--HHHhhC----------CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          147 NARLLDTLTY--QEVTSK----------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       147 ~a~~i~~i~~--~e~~~~----------g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      ++++|+++++  .+..+.          |+|.+|+++++.|.++|++++|+|+++|+.|.++++|+..||+|.+.
T Consensus       191 ~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  265 (266)
T PRK12314        191 DAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFAPK  265 (266)
T ss_pred             CCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCCCceEEccC
Confidence            9999999875  333221          35667999999999999999999999999999999999899999764

>PTZ00489 glutamate 5-kinase; Provisional

Probab=100.00  E-value=5.7e-34  Score=236.93  Aligned_cols=203  Identities=18%  Similarity=0.244  Sum_probs=158.0

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHH---HHHHHHhcCCCeeEecccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIF---LQATMESIGIPTRVQTAFRMS   78 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~l~~~gi~a~~~~~~~~~   78 (219)
                      .++++++++++ ++++|||| ||++++++..++   +........+++++..+..|   +...|.++|+.+. |.+.+..
T Consensus        33 ~l~~~i~~l~~-~~~vilVs-sGava~g~~~~~---~~~~~~~~~qa~aaiGq~~L~~~y~~~f~~~~~~~a-qiLlt~~  106 (264)
T PTZ00489         33 ALCRFIADLQT-KYEVILVT-SGAVAAGYTKKE---MDKSYVPNKQALASMGQPLLMHMYYTELQKHGILCA-QMLLAAY  106 (264)
T ss_pred             HHHHHHHHHhc-CCeEEEEe-cChHhcChhhcC---CCccccHHHHHHHHhCHHHHHHHHHHHHHhCCCeEE-Eeeeecc
Confidence            57899999987 79999999 566988877554   43333344555665444333   5678999999985 5555555


Q ss_pred             cccc--hHHH--HHHHHHHhCCCEEEEeCCC-----CCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCc
Q 027731           79 EVAE--PYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNAR  149 (219)
Q Consensus        79 ~~~~--~~~~--~~~~~~l~~g~ipIv~g~~-----g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~  149 (219)
                      ++..  ++.+  ..+.++|+.|.|||+++++     +..|+|||.+|+.+|..++||+|+|+|||||||++||+.+|+++
T Consensus       107 d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~  186 (264)
T PTZ00489        107 DLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAK  186 (264)
T ss_pred             ccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccc
Confidence            5542  3333  3355789999999999963     34567999999999999999999999999999999999999998


Q ss_pred             c---cccccHHHHhh-------C--CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCC--CCceEEecCC
Q 027731          150 L---LDTLTYQEVTS-------K--DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE--RVGTLIGGTW  210 (219)
Q Consensus       150 ~---i~~i~~~e~~~-------~--g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~--~~GT~i~~~~  210 (219)
                      +   +++++.+++..       .  |+|..|+++|+.+.++|++++|+||++|+.|.+++.|+  ..||+|.+.-
T Consensus       187 ~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~~  261 (264)
T PTZ00489        187 IRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPRV  261 (264)
T ss_pred             eeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeecC
Confidence            7   77888766521       2  44555999999999999999999999999999999775  3799997743

>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=100.00  E-value=5.3e-34  Score=232.66  Aligned_cols=190  Identities=31%  Similarity=0.504  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHh-ccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|+++.. ++++|||||||++++.+... +..+++....+++++.++++|..++..++. +|++++...       
T Consensus        22 ~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~~-------   92 (221)
T cd04253          22 EYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLNARLLIAALG-DAYPPVPTS-------   92 (221)
T ss_pred             HHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCCC-------
Confidence            56788887765 78999999999998876533 223455556788999999999999877666 787765321       


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                           .+++.++|+.|.+||++|+.  +..++|++|+++|..++|++|+++|||||||++||+.+|++++|++++++|+.
T Consensus        93 -----~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~  165 (221)
T cd04253          93 -----YEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELI  165 (221)
T ss_pred             -----HHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHH
Confidence                 13456789999999999864  45799999999999999999999999999999999999999999999998877


Q ss_pred             hC--------CC-CCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          161 SK--------DL-SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       161 ~~--------g~-~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      ++        |+ +.+|+.+++++.++|++++|+|+++|+.|.++++|+..||+|.
T Consensus       166 ~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I~  221 (221)
T cd04253         166 DIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTIIE  221 (221)
T ss_pred             HHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEeC
Confidence            64        23 4679999999999999999999999999999999998999984

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi

>TIGR02076 pyrH_arch uridylate kinase, putative

Probab=100.00  E-value=1e-33  Score=231.05  Aligned_cols=191  Identities=32%  Similarity=0.492  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHh-ccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|++++++ +++|||||||++++.+... ...++.....+++++.++++|..++..+|...++++...+.      
T Consensus        21 ~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~~------   93 (221)
T TIGR02076        21 EFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENF------   93 (221)
T ss_pred             HHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCCH------
Confidence            578999998876 8999999999988765322 22345555678899999999999998888877887653211      


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                            ....+.++.|.+||++|+.  +..++|++|+++|.+++||+|+++|||||||++||+.+|++++|++++++|+.
T Consensus        94 ------~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~  165 (221)
T TIGR02076        94 ------EEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELV  165 (221)
T ss_pred             ------HHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHH
Confidence                  2345678889999999864  56899999999999999999999999999999999999999999999998876


Q ss_pred             hC------CC---CCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          161 SK------DL---SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       161 ~~------g~---~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      ++      |+   +.+|+.+++.+.+.+++++|+|+++|+.+.++++|+..||+|.
T Consensus       166 ~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~  221 (221)
T TIGR02076       166 EIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTIIE  221 (221)
T ss_pred             HHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEeC
Confidence            53      22   3569999999999999999999999999999999998999984

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.

>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

Probab=100.00  E-value=6.9e-34  Score=235.34  Aligned_cols=204  Identities=28%  Similarity=0.387  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhH-HHhcc-----CCCCc--ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEec
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDR--SSADYIGMLATVMNAIFLQATMESIGIPTRVQT   73 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~-~~~~~-----~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~   73 (219)
                      +++++|+++++.|+++|||||||++.+.. ...+.     .+.+.  ...+.+...++..+..++..+|+++|+++.+++
T Consensus        17 ~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~   96 (248)
T cd02115          17 NLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLD   96 (248)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEc
Confidence            57899999988899999999999876542 22211     12222  223344445667777778889999999998877


Q ss_pred             cccccccc-------c--hHHHHHHHHHHhCCCEEEEeCCCC--------CCccChHHHHHHHHHhcCCceEEeeeccCc
Q 027731           74 AFRMSEVA-------E--PYIRRRAVRHLEKGRVVIFAAGTG--------NPFFTTDTAAALRCAEINAEVVLKATNVDG  136 (219)
Q Consensus        74 ~~~~~~~~-------~--~~~~~~~~~~l~~g~ipIv~g~~g--------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~G  136 (219)
                      +.+.....       .  ....+.+.++|+.+.|||++|+..        .+++++|++|+.+|.+|+|++|+|+|||||
T Consensus        97 ~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~G  176 (248)
T cd02115          97 LTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDG  176 (248)
T ss_pred             hHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCe
Confidence            65432211       0  011244567899999999999632        367999999999999999999999999999


Q ss_pred             cccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEE
Q 027731          137 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI  206 (219)
Q Consensus       137 v~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i  206 (219)
                      ||++||+.+|++++|++++++|+.++   |.|.+|++++..+.++|++++|+|+++|+.+ ++|++++.||+|
T Consensus       177 v~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I  248 (248)
T cd02115         177 VYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI  248 (248)
T ss_pred             eecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence            99999999999999999999887764   7888999999999999999999999999999 999999899986

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.

>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis

Probab=100.00  E-value=1.7e-33  Score=236.80  Aligned_cols=203  Identities=21%  Similarity=0.235  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCC----------------CcChHHHHHHHHHHHHHHH---HHHHH
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL----------------DRSSADYIGMLATVMNAIF---LQATM   62 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~l---~~~~l   62 (219)
                      +++++|++|++.|+++|+|+ +|+.+.|+..++.++.                ++......+++++..+..|   |.+.|
T Consensus        35 ~l~~~i~~l~~~g~~vilVs-sGAv~~G~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f  113 (284)
T cd04256          35 SIVEQVSELQSQGREVILVT-SGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDMPQMELDGRACAAVGQSGLMALYEAMF  113 (284)
T ss_pred             HHHHHHHHHHHCCCEEEEEe-eCcHHhChHHhhhccccccchhhhcccccccCCcchhHHHHHHHHcccHHHHHHHHHHH
Confidence            58999999999999999665 3444446565553221                0122333566666555544   56789


Q ss_pred             HhcCCCeeEecccccccccchH--HH--HHHHHHHhCCCEEEEeCCCC--------------CCccChHHHHHHHHHhcC
Q 027731           63 ESIGIPTRVQTAFRMSEVAEPY--IR--RRAVRHLEKGRVVIFAAGTG--------------NPFFTTDTAAALRCAEIN  124 (219)
Q Consensus        63 ~~~gi~a~~~~~~~~~~~~~~~--~~--~~~~~~l~~g~ipIv~g~~g--------------~~~~~sD~~Aa~lA~~l~  124 (219)
                      +++|+++. |..++..++.++.  .+  ..+..+|+.|.|||+++++.              +.++|||++|+++|..++
T Consensus       114 ~~~~~~~~-q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~  192 (284)
T cd04256         114 TQYGITVA-QVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELK  192 (284)
T ss_pred             HHcCCcHH-HeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHHHcC
Confidence            99999985 5566767776442  22  33457899999999997311              245899999999999999


Q ss_pred             CceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC--------CCCC--chHHHHHHHHhCCCcEEEEecCCCchHH
Q 027731          125 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSV--MDMTAITLCQENNIPVVVFNLNQPGNIA  194 (219)
Q Consensus       125 Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~~~--~k~~aa~~a~~~gi~v~I~~g~~~~~i~  194 (219)
                      ||+|+++|||||||++||+ .|++++|++++..+...+        ++++  .|++|+..+.++|++++|+||.+|+.+.
T Consensus       193 Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~  271 (284)
T cd04256         193 ADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGMEAKVKAALWALQGGTSVVITNGMAGDVIT  271 (284)
T ss_pred             CCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHH
Confidence            9999999999999999996 689999999988665422        3444  4999999999999999999999999999


Q ss_pred             HHhcCCCCceEEe
Q 027731          195 KAIQGERVGTLIG  207 (219)
Q Consensus       195 ~~l~g~~~GT~i~  207 (219)
                      ++++|+.+||+|.
T Consensus       272 ~~l~G~~~GT~~~  284 (284)
T cd04256         272 KILEGKKVGTFFT  284 (284)
T ss_pred             HHHcCCCCCEEeC
Confidence            9999999999983

G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.

>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

Probab=100.00  E-value=4.2e-33  Score=231.39  Aligned_cols=200  Identities=26%  Similarity=0.398  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECC-chHHHhHHHhccCCCCcC--hHHHHHHHH---HHHHHHHHHHHHHhcCCCeeEeccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGLDRS--SADYIGMLA---TVMNAIFLQATMESIGIPTRVQTAF   75 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~l~~~~l~~~gi~a~~~~~~   75 (219)
                      +++++|++++++|+++|||||| |+++  +..++   +...  .....+.++   ......++..+|+++|+++. +...
T Consensus        25 ~~~~~i~~~~~~~~~viiV~sg~~~~g--~~~~~---~~~~~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~-q~l~   98 (251)
T cd04242          25 SLVEQIAELRNQGKEVILVSSGAVAAG--RQRLG---LEKRPKTLPEKQALAAVGQSLLMALYEQLFAQYGIKVA-QILL   98 (251)
T ss_pred             HHHHHHHHHHHCCCeEEEEecCchhhC--hhhhc---cCcCCCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-EEEE
Confidence            5789999999999999999964 4553  33333   2221  222233333   34455567889999999985 3334


Q ss_pred             ccccccch--HHH--HHHHHHHhCCCEEEEeCCC-----CCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCC
Q 027731           76 RMSEVAEP--YIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP  146 (219)
Q Consensus        76 ~~~~~~~~--~~~--~~~~~~l~~g~ipIv~g~~-----g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~  146 (219)
                      +..++...  +.+  ..+..+|+.|+|||+++++     +..++++|++|+++|.+|+||+|+|+|||||||++||+.+|
T Consensus        99 t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~  178 (251)
T cd04242          99 TRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENP  178 (251)
T ss_pred             ehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCC
Confidence            43444322  222  2345688999999999742     24678999999999999999999999999999999999999


Q ss_pred             CCccccccc--HHHHhhC--------CCCC--chHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          147 NARLLDTLT--YQEVTSK--------DLSV--MDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       147 ~a~~i~~i~--~~e~~~~--------g~~~--~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      ++++|++++  ++|+.++        ++++  .|++++..+.++|++++|+|+++|+.+.++++|+..||+|.
T Consensus       179 ~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  251 (251)
T cd04242         179 DAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLFL  251 (251)
T ss_pred             CCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeEeC
Confidence            999999999  7776542        3444  48899999999999999999999999999999999999984

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir

>PRK05429 gamma-glutamyl kinase; Provisional

Probab=100.00  E-value=3.8e-33  Score=243.03  Aligned_cols=206  Identities=25%  Similarity=0.373  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcC--hHHHHHHHHHH---HHHHHHHHHHHhcCCCeeEecccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS--SADYIGMLATV---MNAIFLQATMESIGIPTRVQTAFR   76 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~l~~~~l~~~gi~a~~~~~~~   76 (219)
                      +++++|++++++|+++|||| ||+++++...++   +...  .....++++..   ....++..+|+++|+++.. ...+
T Consensus        34 ~la~~I~~l~~~g~~vViV~-sGai~~g~~~l~---l~~~~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~q-il~t  108 (372)
T PRK05429         34 ELARQIAALRAAGHEVVLVS-SGAVAAGRERLG---LPERPKTLAEKQAAAAVGQSRLMQAYEELFARYGITVAQ-ILLT  108 (372)
T ss_pred             HHHHHHHHHHHCCCeEEEEc-ccHhhhhHhhcC---CCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEEE-EEee
Confidence            58999999999999999999 567887776655   3322  22333444433   3334567899999999864 3344


Q ss_pred             cccccc--hHHH--HHHHHHHhCCCEEEEeCCC-----CCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCC
Q 027731           77 MSEVAE--PYIR--RRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN  147 (219)
Q Consensus        77 ~~~~~~--~~~~--~~~~~~l~~g~ipIv~g~~-----g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~  147 (219)
                      ..++..  .|.+  ..+..+|+.|.|||+++++     +..++|||++|+++|.+++||+|+|+|||||||++||+.+|+
T Consensus       109 ~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~  188 (372)
T PRK05429        109 RDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPD  188 (372)
T ss_pred             hhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCC
Confidence            444432  2444  2244688999999999742     346799999999999999999999999999999999999999


Q ss_pred             CcccccccH--HHHhhC--------CC--CCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCCC
Q 027731          148 ARLLDTLTY--QEVTSK--------DL--SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS  212 (219)
Q Consensus       148 a~~i~~i~~--~e~~~~--------g~--~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~~  212 (219)
                      +++|+++++  +|+.++        ++  |..|++|+..+.++|++++|+|+++|+.+.++++|+..||+|.+....
T Consensus       189 a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~  265 (372)
T PRK05429        189 AKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLFLPQEKP  265 (372)
T ss_pred             ceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCCCEEEeeCCcc
Confidence            999999987  444432        33  445889999999999999999999999999999999999999976544

>TIGR01027 proB glutamate 5-kinase

Probab=100.00  E-value=8.2e-33  Score=240.07  Aligned_cols=206  Identities=27%  Similarity=0.389  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcCh--HHHHHHHHHHHHH---HHHHHHHHhcCCCeeEecccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSS--ADYIGMLATVMNA---IFLQATMESIGIPTRVQTAFR   76 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~l~~~~l~~~gi~a~~~~~~~   76 (219)
                      +++++|++++++|+++||||||| .+.++..++   +..++  ....+.++...+.   .++...|.++|+++. +...+
T Consensus        26 ~la~~I~~l~~~g~~vvlV~sG~-~~~g~~~lg---~~~~~~~l~~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~a-qillt  100 (363)
T TIGR01027        26 ELVEQVAALHAAGHEVVIVSSGA-IAAGFEALG---LPERPKTLAEKQALAAVGQVRLMQLYEQLFSQYGIKVA-QILLT  100 (363)
T ss_pred             HHHHHHHHHHHCCCeEEEEeCcH-HhcCccccC---CCCCccchHHHHHHHHhChHHHHHHHHHHHHHcCCeEE-EEEEe
Confidence            58899999999999999999754 555555444   43322  2334454443333   345678999999975 44455


Q ss_pred             cccccc--hHHHH-H-HHHHHhCCCEEEEeCC-----CCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCC
Q 027731           77 MSEVAE--PYIRR-R-AVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN  147 (219)
Q Consensus        77 ~~~~~~--~~~~~-~-~~~~l~~g~ipIv~g~-----~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~  147 (219)
                      ..++.+  +|.+. . +..+|+.|.|||++++     .+..+++||++|+++|.+++||+|+|+|||||||++||+.+|+
T Consensus       101 ~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~  180 (363)
T TIGR01027       101 RADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPD  180 (363)
T ss_pred             ccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCC
Confidence            545543  34442 2 4468899999999964     2356789999999999999999999999999999999999999


Q ss_pred             CcccccccHH--HHhh--------CCC--CCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCCC
Q 027731          148 ARLLDTLTYQ--EVTS--------KDL--SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS  212 (219)
Q Consensus       148 a~~i~~i~~~--e~~~--------~g~--~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~~  212 (219)
                      +++|+++++.  ++..        .|+  |.+|++|+..|.+.|++++|+|+.+|+.+.++++|+..||+|.+....
T Consensus       181 A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~  257 (363)
T TIGR01027       181 AKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHAQARR  257 (363)
T ss_pred             CeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEEeeCCCC
Confidence            9999999863  2221        233  455889999999999999999999999999999999899999886543

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

Probab=100.00  E-value=3.4e-32  Score=224.44  Aligned_cols=196  Identities=25%  Similarity=0.329  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHCCCeEEEEECC-chHHHhHHHhc-cCC--CCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGG-GNIFRGASAAG-NSG--LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM   77 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~   77 (219)
                      +++++|+++++.|+++|||||| |.....+.... ...  .+....+.+...+++++..++...|+++|+++.++++.+.
T Consensus        19 ~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~   98 (239)
T cd04261          19 RVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQA   98 (239)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhC
Confidence            5899999999999999999987 44443332211 111  1112223333344688888888999999999998777654


Q ss_pred             cccc-------c-hHHH-HHHHHHHhCCCEEEEeCCCC---C------CccChHHHHHHHHHhcCCceEEeeeccCcccc
Q 027731           78 SEVA-------E-PYIR-RRAVRHLEKGRVVIFAAGTG---N------PFFTTDTAAALRCAEINAEVVLKATNVDGVYD  139 (219)
Q Consensus        78 ~~~~-------~-~~~~-~~~~~~l~~g~ipIv~g~~g---~------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~  139 (219)
                      ..+.       + .+.+ ..+.++++.+.|||++|+.+   .      .+++||++|+.+|.+|+|++|++||||||||+
T Consensus        99 ~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~  178 (239)
T cd04261          99 GILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYT  178 (239)
T ss_pred             CEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCC
Confidence            2211       1 1222 34557899999999988621   1      34599999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          140 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       140 ~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      +||+.+|+++++++++++|+.++   |.+++|+.|++++.++|+|++|.|+++|+          .||+|+
T Consensus       179 ~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~----------~gt~i~  239 (239)
T cd04261         179 ADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE----------PGTLIT  239 (239)
T ss_pred             CCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC----------CCcEeC
Confidence            99999999999999999988774   78899999999999999999999999884          599884

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and

>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

Probab=100.00  E-value=4.4e-32  Score=223.82  Aligned_cols=196  Identities=26%  Similarity=0.365  Sum_probs=151.5

Q ss_pred             HHHHHHHHHHHCCCeEEEEECC-chHH-HhHHHhccCC--CCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGG-GNIF-RGASAAGNSG--LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM   77 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~Gg-G~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~   77 (219)
                      +++++|+++++.|+++|||||| |... +.....+...  .+....+.+.+.++.+|+.++.+.|+++|+++.++++.+.
T Consensus        19 ~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~   98 (239)
T cd04246          19 RVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQA   98 (239)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccC
Confidence            5899999999999999999985 5543 3333332111  1222334444445678888888999999999988776653


Q ss_pred             cccc-ch-------HHH-HHHHHHHhCCCEEEEeCCCC---C------CccChHHHHHHHHHhcCCceEEeeeccCcccc
Q 027731           78 SEVA-EP-------YIR-RRAVRHLEKGRVVIFAAGTG---N------PFFTTDTAAALRCAEINAEVVLKATNVDGVYD  139 (219)
Q Consensus        78 ~~~~-~~-------~~~-~~~~~~l~~g~ipIv~g~~g---~------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~  139 (219)
                      ..+. ++       ..+ ..+.+++++|.|||++|+.+   .      .+++||++|+.+|.+|+|++|++||||||||+
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~  178 (239)
T cd04246          99 GILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYT  178 (239)
T ss_pred             CEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            2111 11       122 34557899999999988621   1      34589999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          140 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       140 ~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      +||+.+|+++++++++++|+.++   |.+++|++|++++.++|+|++|+|+++|+          .||+|+
T Consensus       179 ~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~----------~gt~i~  239 (239)
T cd04246         179 ADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN----------PGTLIT  239 (239)
T ss_pred             CCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC----------CCcEeC
Confidence            99999999999999999988764   77899999999999999999999999874          599884

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati

>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms

Probab=100.00  E-value=9.3e-33  Score=229.52  Aligned_cols=197  Identities=22%  Similarity=0.314  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCC-------cChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD-------RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA   74 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~   74 (219)
                      ++++++++++  |+++|||||||++.+..  +..++++       +......++...++|..+. ++|.++|+++.++++
T Consensus        27 ~l~~~l~~l~--g~~vvlVhGgg~~~~~~--~~~~g~~~g~~~~~~~~l~~~~~~~~~ln~~~~-~~l~~~g~~a~~l~~  101 (252)
T cd04241          27 RIARELAEAI--DEKLVLVHGGGSFGHPK--AKEYGLPDGDGSFSAEGVAETHEAMLELNSIVV-DALLEAGVPAVSVPP  101 (252)
T ss_pred             HHHHHHHhcc--CCCEEEEECCCcccCHH--HHHhCCCcCCCchhhhhHHHHHHHHHHHHHHHH-HHHHHCCCCeEEECh
Confidence            3566666665  89999999999986542  2223343       1223344444567777654 688889999998776


Q ss_pred             ccccccc--ch-HHH-HHHHHHHhCCCEEEEeCC---CC---CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCC
Q 027731           75 FRMSEVA--EP-YIR-RRAVRHLEKGRVVIFAAG---TG---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRR  144 (219)
Q Consensus        75 ~~~~~~~--~~-~~~-~~~~~~l~~g~ipIv~g~---~g---~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~  144 (219)
                      .+.....  +. .++ +.+.++|+.|.|||++|+   .+   ..++++|++|+.+|.+|+||+|+|+|||||||++||  
T Consensus       102 ~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P--  179 (252)
T cd04241         102 SSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPP--  179 (252)
T ss_pred             HHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCC--
Confidence            5532111  11 122 335578999999999874   11   356899999999999999999999999999999999  


Q ss_pred             CCCCcccccccHHHHhhC------------CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEE
Q 027731          145 NPNARLLDTLTYQEVTSK------------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI  206 (219)
Q Consensus       145 ~~~a~~i~~i~~~e~~~~------------g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i  206 (219)
                       |++++|++++++++.++            |+|..|++++..+.++|++++|+|+.+|+.+.++++|+..||+|
T Consensus       180 -~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~l~g~~~GT~i  252 (252)
T cd04241         180 -PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKPENLYRALLGNFIGTRI  252 (252)
T ss_pred             -CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHcCCCCceEC
Confidence             78999999998554321            34455999999999999999999999999999999999899985

Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

Probab=100.00  E-value=7.5e-32  Score=224.29  Aligned_cols=194  Identities=24%  Similarity=0.368  Sum_probs=153.5

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhc-cCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      ++|++|+++++ +++++||||||+++|.+.... ..|++....+.+++.+..+|..++..+|..+|++++..     .++
T Consensus        52 ~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i~~-----~~~  125 (262)
T cd04255          52 PLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQNAEMLATLLAKHGGSKVGH-----GDL  125 (262)
T ss_pred             HHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc-----ccH
Confidence            68899999877 689999999999987533211 24676666778888889999888878888899986411     011


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCC------------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCC
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTG------------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA  148 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g------------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a  148 (219)
                            ..+.++|+.|+|||++|+.+            .+++|+|++|+++|.+++|++|+++|||||||++||+.+|++
T Consensus       126 ------~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a  199 (262)
T cd04255         126 ------LQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKA  199 (262)
T ss_pred             ------HHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCC
Confidence                  24667899999999999732            467899999999999999999999999999999999999999


Q ss_pred             cccccccHHHHhhC--CCCCchHHHHHHH--HhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          149 RLLDTLTYQEVTSK--DLSVMDMTAITLC--QENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       149 ~~i~~i~~~e~~~~--g~~~~k~~aa~~a--~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      ++|+++++.++.++  +...|+-.+...+  .+..++++|+|+++|+.+.+++.|+..||+|+
T Consensus       200 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i~  262 (262)
T cd04255         200 EFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTIIR  262 (262)
T ss_pred             eEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEeC
Confidence            99999999887654  2223433333222  23336899999999999999999999999984

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

Probab=100.00  E-value=1.5e-31  Score=218.97  Aligned_cols=186  Identities=26%  Similarity=0.323  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|+++ +.|+++|+||||+. +.+.+..+.          .+..+++.++..+++.+|+++|+++..+++.+....
T Consensus        19 ~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~----------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~   87 (227)
T cd04234          19 RVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA----------LLLSFGERLSARLLAAALRDRGIKARSLDARQAGIT   87 (227)
T ss_pred             HHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH----------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEE
Confidence            578899998 88999999997653 433322211          334466788999999999999999998777654322


Q ss_pred             cc-------hH-H-HHHHHHHHhC-CCEEEEeCCCC---C------CccChHHHHHHHHHhcCCceEEeeeccCccccCC
Q 027731           81 AE-------PY-I-RRRAVRHLEK-GRVVIFAAGTG---N------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN  141 (219)
Q Consensus        81 ~~-------~~-~-~~~~~~~l~~-g~ipIv~g~~g---~------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~d  141 (219)
                      ..       .+ . .+.+.++++. +.|||++|+.+   .      .+++||++|+.+|.+|+||+|++||||||||++|
T Consensus        88 ~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~d  167 (227)
T cd04234          88 TDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTAD  167 (227)
T ss_pred             cCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCC
Confidence            11       11 1 2345578899 99999998621   1      2458999999999999999999999999999999


Q ss_pred             CCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          142 PRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       142 P~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      |+.+|+++++++++++|+.++   |.+++|++|+++|.++++|++|+|+++|+         ..||+|.
T Consensus       168 P~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~  227 (227)
T cd04234         168 PRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE---------APGTLIT  227 (227)
T ss_pred             CCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence            999999999999999988764   78899999999999999999999999886         4599884

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=99.98  E-value=4.4e-31  Score=232.93  Aligned_cols=198  Identities=21%  Similarity=0.276  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhccCCC----CcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGNSGL----DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR   76 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~   76 (219)
                      +++++|+++++.|+++|+|||||. +.+.+..+...++    +....+.+.+.++++++.++..+|+++|+++.++++.+
T Consensus        20 ~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~   99 (401)
T TIGR00656        20 NAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGE   99 (401)
T ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEecccc
Confidence            578999999999999999998864 5554444332223    22234566667888888889999999999999887655


Q ss_pred             cccc-----cch-----HHHHHHHHHHhCCCEEEEeCCC-----CC----CccChHHHHHHHHHhcCCceEEeeeccCcc
Q 027731           77 MSEV-----AEP-----YIRRRAVRHLEKGRVVIFAAGT-----GN----PFFTTDTAAALRCAEINAEVVLKATNVDGV  137 (219)
Q Consensus        77 ~~~~-----~~~-----~~~~~~~~~l~~g~ipIv~g~~-----g~----~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv  137 (219)
                      ....     .+.     ...+.+.++++.|.|||++|+.     |.    .+++||++|+.+|.+|+|++|++|||||||
T Consensus       100 ~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv  179 (401)
T TIGR00656       100 AGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGV  179 (401)
T ss_pred             ceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence            3211     110     1114456789999999999862     21    346899999999999999999999999999


Q ss_pred             ccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          138 YDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       138 ~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      |++||+.+|+++++++++++|+.++   |..++|++|+.+|.++++|++|.|+++|+          .||+|.++
T Consensus       180 ~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~----------~gT~I~~~  244 (401)
T TIGR00656       180 YTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE----------EGTLITNS  244 (401)
T ss_pred             CcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC----------CCeEEEeC
Confidence            9999999999999999999998874   88899999999999999999999999885          49999764

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=99.98  E-value=3.6e-31  Score=234.12  Aligned_cols=202  Identities=27%  Similarity=0.309  Sum_probs=161.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCc--hHHHhHHHhc-------------------c--CCC--------------------
Q 027731            2 AIAREVASVTRLGIEVAIVVGGG--NIFRGASAAG-------------------N--SGL--------------------   38 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG--~~~~~~~~~~-------------------~--~~~--------------------   38 (219)
                      ++++-|++..+.|+++|+|++++  .+......++                   .  ...                    
T Consensus        21 ~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~  100 (447)
T COG0527          21 RVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDPFIAARLAEVIAEFKKVLLGI  100 (447)
T ss_pred             HHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhcchhhhhHhhhHhhhhHHhhhh
Confidence            56778888888899999999885  3433322221                   0  011                    


Q ss_pred             ------CcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccch--------HH-HHH-HHHHHhCCCEEEEe
Q 027731           39 ------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--------YI-RRR-AVRHLEKGRVVIFA  102 (219)
Q Consensus        39 ------~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~--------~~-~~~-~~~~l~~g~ipIv~  102 (219)
                            +++..|.+-..++++++.+++.+|++.|+++.++++++.+.....        .. .++ +..+++.+.+||++
T Consensus       101 ~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~~~~v~Vv~  180 (447)
T COG0527         101 ALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEGKVPVVA  180 (447)
T ss_pred             hhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhcCCcEEEec
Confidence                  223345555677899999999999999999999988865433211        11 133 55678899999999


Q ss_pred             CCCC---------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHH
Q 027731          103 AGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMT  170 (219)
Q Consensus       103 g~~g---------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~  170 (219)
                      ||.|         ..+++||++|+.||++|+||++.|||||||||++|||.+|+|++|++|||+|+.++   |.+++|++
T Consensus       181 GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHpr  260 (447)
T COG0527         181 GFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPR  260 (447)
T ss_pred             CceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHH
Confidence            9843         25689999999999999999999999999999999999999999999999998875   89999999


Q ss_pred             HHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCCC
Q 027731          171 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS  212 (219)
Q Consensus       171 aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~~  212 (219)
                      +..+|.+++||++|.|.++|+         ..||+|..+...
T Consensus       261 av~pa~~~~Ip~~i~~t~~p~---------~~GTlI~~~~~~  293 (447)
T COG0527         261 AVEPAMRSGIPLRIKNTFNPD---------APGTLITAETES  293 (447)
T ss_pred             HHHHHHhcCCcEEEEecCCCC---------CCceEEecCCcC
Confidence            999999999999999999986         479999987543

>PRK08841 aspartate kinase; Validated

Probab=99.98  E-value=1.1e-30  Score=228.76  Aligned_cols=198  Identities=24%  Similarity=0.311  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhH-HHhcc-CCC-CcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGA-SAAGN-SGL-DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM   77 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~   77 (219)
                      +++++|+++++.|+++|+||||++ ....+ ..... ... +++..+.+.+.++.++..+++.+|++.|+++.++++++.
T Consensus        21 ~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~  100 (392)
T PRK08841         21 TVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQA  100 (392)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHc
Confidence            578999999999999999998864 33322 21111 111 122345555567788999999999999999999887764


Q ss_pred             cccc-----ch---HHH-HHHHHHHhCCCEEEEeCCCC---------CCccChHHHHHHHHHhcCCceEEeeeccCcccc
Q 027731           78 SEVA-----EP---YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD  139 (219)
Q Consensus        78 ~~~~-----~~---~~~-~~~~~~l~~g~ipIv~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~  139 (219)
                      ..+.     +.   .++ ..+.++++.+.|||++|+.+         ..+++||++|+.+|.+|+||++++||||||||+
T Consensus       101 ~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt  180 (392)
T PRK08841        101 NIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYT  180 (392)
T ss_pred             CEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCc
Confidence            3211     11   122 33557889999999999732         135699999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          140 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       140 ~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      +||+.+|+|+++++++|+|+.++   |.+++|++|+++|.++|+|++|.|++++.          .||+|..+
T Consensus       181 ~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~~----------~GT~I~~~  243 (392)
T PRK08841        181 CDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVG----------EGTLIKGE  243 (392)
T ss_pred             CCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCCC----------CCeEEEec
Confidence            99999999999999999987764   88899999999999999999999998752          59999654

>COG1608 Predicted archaeal kinase [General function prediction only]

Probab=99.97  E-value=4.6e-31  Score=211.22  Aligned_cols=202  Identities=27%  Similarity=0.388  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCC-------CcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL-------DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA   74 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~   74 (219)
                      ++|++|+.  ..-.++|||||||||+|  +.++++++       ++.....++.....+|..++ +.|.++|+++++..|
T Consensus        28 ria~eI~~--~~~~~livVHGgGSFGH--p~Ak~~~~~~~~~~~s~~G~~~~~~am~~L~~~V~-~~l~~~Gv~av~~~P  102 (252)
T COG1608          28 RIAREISN--GKPEKLIVVHGGGSFGH--PAAKEFGLEGLKNYLSPLGFSLTHLAMLELNSIVV-DALLDAGVRAVSVVP  102 (252)
T ss_pred             HHHHHHhc--CCcccEEEEecCccccC--HHHHHhCccccccccCccchHHHHHHHHHHHHHHH-HHHHhcCCccccccC
Confidence            45555554  22358999999999965  54555555       11222334444456777765 678889999975444


Q ss_pred             cccccccch--HH-HHHHHHHHhCCCEEEEeCC------CCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCC
Q 027731           75 FRMSEVAEP--YI-RRRAVRHLEKGRVVIFAAG------TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN  145 (219)
Q Consensus        75 ~~~~~~~~~--~~-~~~~~~~l~~g~ipIv~g~------~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~  145 (219)
                      .+...+..+  |. -..+.++|+.|++|+++|+      .+..++|+|.++.++|..|++|+++|+|||||||++||.+.
T Consensus       103 ~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~  182 (252)
T COG1608         103 ISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKV  182 (252)
T ss_pred             cceeecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcC
Confidence            333211111  11 1345679999999999995      23567999999999999999999999999999999999999


Q ss_pred             CCCcccccccHHHHhh-CC----CCCc--hHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          146 PNARLLDTLTYQEVTS-KD----LSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       146 ~~a~~i~~i~~~e~~~-~g----~~~~--k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      |+++.++++....... .+    +++|  |++++....+.+.+++++|+++|++|.+++.|+.+||+|.+
T Consensus       183 p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~~l~G~~vGT~I~~  252 (252)
T COG1608         183 PDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRALRGENVGTRIDG  252 (252)
T ss_pred             ccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHHHHHhcCCCCceEecC
Confidence            9999988887532221 11    3444  99999999999999999999999999999999999999863

>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]

Probab=99.97  E-value=4e-31  Score=209.93  Aligned_cols=206  Identities=22%  Similarity=0.332  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCC-----c-----ChHHHHHHHHHHHHHHH---HHHHHHhcCCC
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLD-----R-----SSADYIGMLATVMNAIF---LQATMESIGIP   68 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~l---~~~~l~~~gi~   68 (219)
                      .|++++.+|++.|+++++|+ +|+++-|.+.++...+.     +     ......++.|...+..|   +..+|.++|+.
T Consensus        36 ~IVEqV~~L~~~G~evilVS-SGaVA~G~qrLr~~~~~s~s~r~~l~~~~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~  114 (285)
T KOG1154|consen   36 SIVEQVSELQRMGREVILVS-SGAVAFGRQRLRQELLPSSSMRQTLKPQSELAEKRACAAVGQSGLMALYETLFTQYGIT  114 (285)
T ss_pred             HHHHHHHHHHhcCceEEEEe-cchhhhhHHHhhhhhccchhHHHhhCCccchhhHHHHHHhCcchHHHHHHHHHHHhccc
Confidence            58999999999999999999 57777677776632111     1     12334455555544443   56789999999


Q ss_pred             eeEecccccccccchH--HH--HHHHHHHhCCCEEEEeCCC-----CCCccC---hHHHHHHHHHhcCCceEEeeeccCc
Q 027731           69 TRVQTAFRMSEVAEPY--IR--RRAVRHLEKGRVVIFAAGT-----GNPFFT---TDTAAALRCAEINAEVVLKATNVDG  136 (219)
Q Consensus        69 a~~~~~~~~~~~~~~~--~~--~~~~~~l~~g~ipIv~g~~-----g~~~~~---sD~~Aa~lA~~l~Ad~liiltDV~G  136 (219)
                      +. |.+.+..|+.+..  .|  ..+.++|..+.|||+|.++     +.++.+   ||++|+.+|.+++||.|+++|||||
T Consensus       115 iA-QvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdg  193 (285)
T KOG1154|consen  115 IA-QVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDG  193 (285)
T ss_pred             hh-eeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccc
Confidence            75 7778877776432  22  3355799999999999974     346666   9999999999999999999999999


Q ss_pred             cccCCCCCCCCCcccccccHHHHh---------hCCCCCc--hHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceE
Q 027731          137 VYDDNPRRNPNARLLDTLTYQEVT---------SKDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL  205 (219)
Q Consensus       137 v~~~dP~~~~~a~~i~~i~~~e~~---------~~g~~~~--k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~  205 (219)
                      +|+.+|...| .++++..+..+-.         .+|+++|  |+.||..|...|++|.|+||..|+.|.+++.|..+||.
T Consensus       194 lYt~PPd~~~-~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~~~Gv~viI~~g~~p~~I~~iv~g~kvgt~  272 (285)
T KOG1154|consen  194 LYTGPPDADP-SKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNALNAGVSVIITNGDAPENITDIVEGKKVGTF  272 (285)
T ss_pred             cccCCCCCCc-ceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHHHhcCCceEEEeCCCChHHHHHHHhhhhhhhh
Confidence            9997765444 5788877654322         2356666  99999999999999999999999999999999999999


Q ss_pred             EecCC
Q 027731          206 IGGTW  210 (219)
Q Consensus       206 i~~~~  210 (219)
                      |....
T Consensus       273 f~~~~  277 (285)
T KOG1154|consen  273 FEQLK  277 (285)
T ss_pred             hhhcc
Confidence            97643

>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional

Probab=99.97  E-value=1e-30  Score=218.95  Aligned_cols=201  Identities=21%  Similarity=0.272  Sum_probs=155.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhH-HHhcc-----C---C--CCcCh---HHHHHHHHHHHHHHHHHHHHHhcCC
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----S---G--LDRSS---ADYIGMLATVMNAIFLQATMESIGI   67 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~-~~~~~-----~---~--~~~~~---~~~~~~~~~~~~~~l~~~~l~~~gi   67 (219)
                      +++++|+.+++.|.++|||||||++.+.+ .+.+.     .   |  ++.++   .+.+.+....+|..++ +.|+++|+
T Consensus        16 ~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~~ln~~lv-~~L~~~Gv   94 (268)
T PRK14058         16 DALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMALINKQLV-ERLQSLGV   94 (268)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHHHHHHHHH-HHHHhCCC
Confidence            57899999999999999999999986643 23331     0   2  22222   2333433348888887 48999999


Q ss_pred             CeeEeccccccccc-------------------chH------HH-HHHHHHHhCCCEEEEeCC----CCC-CccChHHHH
Q 027731           68 PTRVQTAFRMSEVA-------------------EPY------IR-RRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAA  116 (219)
Q Consensus        68 ~a~~~~~~~~~~~~-------------------~~~------~~-~~~~~~l~~g~ipIv~g~----~g~-~~~~sD~~A  116 (219)
                      +++++++.+...+.                   ..|      ++ +.+..+|+.|.|||++|+    .|. .++++|.+|
T Consensus        95 ~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A  174 (268)
T PRK14058         95 NAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAA  174 (268)
T ss_pred             CccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHH
Confidence            99988776542110                   001      22 345578999999999985    222 358999999


Q ss_pred             HHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-----CCCCchHHHHHHHHhCCC-cEEEEecCCC
Q 027731          117 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAITLCQENNI-PVVVFNLNQP  190 (219)
Q Consensus       117 a~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~k~~aa~~a~~~gi-~v~I~~g~~~  190 (219)
                      +.+|.+++|++|+|+|||||||++||.   +++++++++++|+.++     |+|..|++++..+.++|+ +++|+|+++|
T Consensus       175 ~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~  251 (268)
T PRK14058        175 AAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVD  251 (268)
T ss_pred             HHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCc
Confidence            999999999999999999999999883   4689999999887664     667779999999999999 6999999999


Q ss_pred             chHHHHhcCCCCceEEec
Q 027731          191 GNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       191 ~~i~~~l~g~~~GT~i~~  208 (219)
                      +.+.++++|+  ||+|.+
T Consensus       252 ~~l~~~l~G~--GT~I~~  267 (268)
T PRK14058        252 DPISAALAGE--GTVIVN  267 (268)
T ss_pred             chHHHHhCCC--ceEEec
Confidence            9999999875  999975

>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

Probab=99.97  E-value=1.1e-29  Score=210.15  Aligned_cols=196  Identities=27%  Similarity=0.342  Sum_probs=146.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEE-----CCchHH-HhHHHhc-cCCCCc--ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731            2 AIAREVASVTRLGIEVAIVV-----GGGNIF-RGASAAG-NSGLDR--SSADYIGMLATVMNAIFLQATMESIGIPTRVQ   72 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~-----GgG~~~-~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~   72 (219)
                      +++++|+++++.|+++||||     |||... +.+..+. ..+.+.  ...+.+.+.+...+..++.++|+++|+++..+
T Consensus        19 ~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l   98 (244)
T cd04260          19 QVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVAL   98 (244)
T ss_pred             HHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEe
Confidence            68999999999998877666     333222 1122111 122333  23344444556677767889999999999988


Q ss_pred             ccccccc-----cc--c-hHHH-HHHHHHHhCCCEEEEeCC---CCC------CccChHHHHHHHHHhcCCceEEeeecc
Q 027731           73 TAFRMSE-----VA--E-PYIR-RRAVRHLEKGRVVIFAAG---TGN------PFFTTDTAAALRCAEINAEVVLKATNV  134 (219)
Q Consensus        73 ~~~~~~~-----~~--~-~~~~-~~~~~~l~~g~ipIv~g~---~g~------~~~~sD~~Aa~lA~~l~Ad~liiltDV  134 (219)
                      ++.+...     +.  + .+++ +.+.++|+.+.|||++|+   ++.      .++++|++|+.+|.+|+|+++++||||
T Consensus        99 ~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV  178 (244)
T cd04260          99 TGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDV  178 (244)
T ss_pred             chHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECC
Confidence            7654322     11  1 1223 335578999999999986   221      235899999999999999999999999


Q ss_pred             CccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          135 DGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       135 ~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      ||||++||+.+|++++|++++++|+.++   |..++|+.|++++.++++|++|.|+++|.          .||+|+
T Consensus       179 ~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~----------~gt~i~  244 (244)
T cd04260         179 DGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN----------PGTLIT  244 (244)
T ss_pred             CcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC----------CCCEeC
Confidence            9999999999999999999999988774   77789999999999999999999999763          499884

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet

>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]

Probab=99.97  E-value=2e-29  Score=207.18  Aligned_cols=202  Identities=24%  Similarity=0.318  Sum_probs=161.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-----CCCCcChH---HHHHH-HHHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDRSSA---DYIGM-LATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-----~~~~~~~~---~~~~~-~~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.|+..|.++|||||||+ +...+..++.     .|++.++.   +...+ ++..+|..++ +.|+++|..+++
T Consensus        22 ~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~G~vNk~iv-a~l~~~g~~avG  100 (265)
T COG0548          22 AFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLGGTVNKEIV-ARLSKHGGQAVG  100 (265)
T ss_pred             HHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHHHHHHHHHH-HHHHHhCCccee
Confidence            578999999999999999999998 5566666653     46666554   44444 4448888886 589999999999


Q ss_pred             eccccccccc-c----h------------HHHHHH-HHHHhCCCEEEEeCC----CCCC-ccChHHHHHHHHHhcCCceE
Q 027731           72 QTAFRMSEVA-E----P------------YIRRRA-VRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVV  128 (219)
Q Consensus        72 ~~~~~~~~~~-~----~------------~~~~~~-~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa~lA~~l~Ad~l  128 (219)
                      +++.+...+. +    .            .+|..+ ..++++++|||++|.    +|.. .+++|+.|..+|.+|+|++|
T Consensus       101 lsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~~iA~aLkAekL  180 (265)
T COG0548         101 LSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADTAAGALAAALKAEKL  180 (265)
T ss_pred             eeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcEEeeCHHHHHHHHHHHcCCCeE
Confidence            8887743221 0    0            134544 468999999999984    4554 49999999999999999999


Q ss_pred             EeeeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHHhcC
Q 027731          129 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQG  199 (219)
Q Consensus       129 iiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~l~g  199 (219)
                      +++|||+||++++|.  |  +++++++.+|+.++       |+|..|+++|..|++.|++ ++|.|++.++.+ .++|++
T Consensus       181 i~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~eLFt~  256 (265)
T COG0548         181 ILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRVPHSLLLELFTR  256 (265)
T ss_pred             EEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHhcC
Confidence            999999999998762  2  68999999887764       5677899999999999995 999999999996 578999


Q ss_pred             CCCceEEec
Q 027731          200 ERVGTLIGG  208 (219)
Q Consensus       200 ~~~GT~i~~  208 (219)
                      +.+||.|.+
T Consensus       257 ~giGT~i~~  265 (265)
T COG0548         257 DGIGTMIVR  265 (265)
T ss_pred             CCcceEecC
Confidence            999999863

>CHL00202 argB acetylglutamate kinase; Provisional

Probab=99.97  E-value=6.3e-29  Score=209.58  Aligned_cols=202  Identities=16%  Similarity=0.240  Sum_probs=154.8

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhcc-----CCCCcChHHH---HHH-HHHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSADY---IGM-LATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~-----~~~~~~~~~~---~~~-~~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.|+..|.++|||||||++.+. ..+.+.     .|++.+..+.   +.+ ++..+|..++ +.|.++|+++++
T Consensus        43 ~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~~l~~~~~~l~g~ln~~lv-~~L~~~Gv~av~  121 (284)
T CHL00202         43 DIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLV-GSINANGGKAVG  121 (284)
T ss_pred             HHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHHHHHHHHHHHhhHHHHHHH-HHHHhCCCCeee
Confidence            5889999999999999999999997653 233332     3555544333   333 4567888876 588999999999


Q ss_pred             eccccccccc-------------c-hHHHH-HHHHHHhCCCEEEEeCC----CCCC-ccChHHHHHHHHHhcCCceEEee
Q 027731           72 QTAFRMSEVA-------------E-PYIRR-RAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKA  131 (219)
Q Consensus        72 ~~~~~~~~~~-------------~-~~~~~-~~~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa~lA~~l~Ad~liil  131 (219)
                      +++.+...+.             + ..++. .+..+|+.|.|||+++.    .|.. .+++|++|+.+|.+|+|++|+|+
T Consensus       122 l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~l  201 (284)
T CHL00202        122 LCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILL  201 (284)
T ss_pred             eeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEE
Confidence            8877543110             0 01233 35578999999999984    2333 47999999999999999999999


Q ss_pred             eccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHHhcCCCC
Q 027731          132 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERV  202 (219)
Q Consensus       132 tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~l~g~~~  202 (219)
                      |||||||+++  .+| .+++++++++|+.++       |+|..|+++|..+.++|++ ++|+++++|+.+ .++|+++..
T Consensus       202 Tdv~Gv~~~~--~d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~  278 (284)
T CHL00202        202 TDTPGILADI--NDP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGI  278 (284)
T ss_pred             eCChhhcCCC--CCC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCC
Confidence            9999999853  123 379999999887653       4556699999999999997 899999999975 799999999


Q ss_pred             ceEEe
Q 027731          203 GTLIG  207 (219)
Q Consensus       203 GT~i~  207 (219)
                      ||+|.
T Consensus       279 GT~i~  283 (284)
T CHL00202        279 GSMLV  283 (284)
T ss_pred             ceEEe
Confidence            99985

>PLN02512 acetylglutamate kinase

Probab=99.97  E-value=1.3e-28  Score=209.76  Aligned_cols=203  Identities=19%  Similarity=0.280  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHH-Hhcc-----CCCCcChHH---HHHH-HHHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSSAD---YIGM-LATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~-~~~~-----~~~~~~~~~---~~~~-~~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.|++.|.++|||||||++.+.+. ..+.     .|++.+...   .+.+ ++..+|..++ +.|+++|+++++
T Consensus        67 ~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv-~~L~~~Gv~av~  145 (309)
T PLN02512         67 GVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLV-SLINKAGGTAVG  145 (309)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHH-HHHHHcCCCeEE
Confidence            478899989999999999999999876432 3321     234443333   2333 3457888876 689999999999


Q ss_pred             ecccccc-----------ccc---ch-HHH-HHHHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcCCceEEe
Q 027731           72 QTAFRMS-----------EVA---EP-YIR-RRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLK  130 (219)
Q Consensus        72 ~~~~~~~-----------~~~---~~-~~~-~~~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~lii  130 (219)
                      +++.+..           ++.   +. .++ +.+..+|+.|.|||++|+    .+. ..+++|++|+++|.+|+|++|+|
T Consensus       146 l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~  225 (309)
T PLN02512        146 LSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLIL  225 (309)
T ss_pred             eehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEE
Confidence            8776532           111   10 123 335578999999999995    222 34699999999999999999999


Q ss_pred             eeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHHhcCCC
Q 027731          131 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGER  201 (219)
Q Consensus       131 ltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~l~g~~  201 (219)
                      +|||||||+++|   +++++|++++++|+.++       |+|..|++++..+.+.|++ ++|+++..|+.+ .++++++.
T Consensus       226 lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~  302 (309)
T PLN02512        226 LTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEG  302 (309)
T ss_pred             EeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCC
Confidence            999999998764   24789999999887653       4556699999999999996 999999999887 47888888


Q ss_pred             CceEEec
Q 027731          202 VGTLIGG  208 (219)
Q Consensus       202 ~GT~i~~  208 (219)
                      .||+|.+
T Consensus       303 ~GT~I~~  309 (309)
T PLN02512        303 AGTMITG  309 (309)
T ss_pred             CeeEEeC
Confidence            9999974

>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

Probab=99.97  E-value=8.6e-29  Score=209.71  Aligned_cols=155  Identities=28%  Similarity=0.379  Sum_probs=130.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc-----ccc--------hHHHHHHHHHHhCCCEEEEeCCCC----
Q 027731           44 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-----VAE--------PYIRRRAVRHLEKGRVVIFAAGTG----  106 (219)
Q Consensus        44 ~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~-----~~~--------~~~~~~~~~~l~~g~ipIv~g~~g----  106 (219)
                      +.+.+.++++|+.+++.+|+++|+++.++++.+...     +.+        .+++..+..+++.+.|||++||.+    
T Consensus       119 d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~  198 (298)
T cd04244         119 DYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATED  198 (298)
T ss_pred             hHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCC
Confidence            444456788999999999999999999988766431     111        112334456778899999999622    


Q ss_pred             -----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhC
Q 027731          107 -----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN  178 (219)
Q Consensus       107 -----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~  178 (219)
                           ..+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++   |.+++|++|+.+|.++
T Consensus       199 g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~  278 (298)
T cd04244         199 GAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEK  278 (298)
T ss_pred             CCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHc
Confidence                 14679999999999999999999999999999999999999999999999998875   8899999999999999


Q ss_pred             CCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          179 NIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       179 gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      +||++|.|+++|+         ..||+|+
T Consensus       279 ~Ipi~i~n~~~p~---------~~GT~I~  298 (298)
T cd04244         279 GIPVRVKNTFNPE---------APGTLIT  298 (298)
T ss_pred             CCcEEEeeCCCCC---------CCCCEeC
Confidence            9999999999987         5799984

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.

>PRK06635 aspartate kinase; Reviewed

Probab=99.97  E-value=5.6e-29  Score=219.78  Aligned_cols=198  Identities=27%  Similarity=0.372  Sum_probs=153.0

Q ss_pred             HHHHHHHHHHHCCCeEEEEECC-chHHHh-HHHhcc-CCC-CcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGG-GNIFRG-ASAAGN-SGL-DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM   77 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~   77 (219)
                      +++++|+++++.|+++|+|||| |.+... ....+. ... +....+.+.+.++.+|..++..+|+++|+++.++++.+.
T Consensus        21 ~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~  100 (404)
T PRK06635         21 RVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQA  100 (404)
T ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhC
Confidence            5889999999999999988876 444432 233321 111 223334444456678998888999999999998877654


Q ss_pred             cccc-ch-------HHH-HHHHHHHhCCCEEEEeCCCC---------CCccChHHHHHHHHHhcCCceEEeeeccCcccc
Q 027731           78 SEVA-EP-------YIR-RRAVRHLEKGRVVIFAAGTG---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYD  139 (219)
Q Consensus        78 ~~~~-~~-------~~~-~~~~~~l~~g~ipIv~g~~g---------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~  139 (219)
                      ..+. ..       ..+ ..+.++|+.|.|||++|+.+         ..+++||++|+++|..|+||++++||||||||+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~  180 (404)
T PRK06635        101 GIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYT  180 (404)
T ss_pred             CEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCc
Confidence            2211 10       112 34557899999999998622         135699999999999999999999999999999


Q ss_pred             CCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          140 DNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       140 ~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      +||+.+|+++++++++++|+.++   |.+++|++|+.++.++++|++|.|++++          ..||+|...
T Consensus       181 ~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~----------~~gT~i~~~  243 (404)
T PRK06635        181 TDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSD----------NPGTLITGE  243 (404)
T ss_pred             CCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCC----------CCCCEEeeC
Confidence            99999999999999999988874   7778999999999999999999999865          259999764

>PRK07431 aspartate kinase; Provisional

Probab=99.97  E-value=8e-29  Score=227.93  Aligned_cols=198  Identities=25%  Similarity=0.355  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEECC-chHHHhHHHhccCCC-CcChHHHHHH---HHHHHHHHHHHHHHHhcCCCeeEecccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGG-GNIFRGASAAGNSGL-DRSSADYIGM---LATVMNAIFLQATMESIGIPTRVQTAFR   76 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~l~~~~l~~~gi~a~~~~~~~   76 (219)
                      +++++|+++++.|+++|||||| |.+.+.+..+.. .+ +..+.+...+   .++.++..+++.+|+++|+++.++++.+
T Consensus        21 ~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~-~~t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~   99 (587)
T PRK07431         21 AVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAK-EISSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQ   99 (587)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHH-HhccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhH
Confidence            5789999999999999999995 555544433321 12 1122233333   3457888888889999999999888765


Q ss_pred             cccccch--------HHH-HHHHHHHhCCCEEEEeCCCCC-----------CccChHHHHHHHHHhcCCceEEeeeccCc
Q 027731           77 MSEVAEP--------YIR-RRAVRHLEKGRVVIFAAGTGN-----------PFFTTDTAAALRCAEINAEVVLKATNVDG  136 (219)
Q Consensus        77 ~~~~~~~--------~~~-~~~~~~l~~g~ipIv~g~~g~-----------~~~~sD~~Aa~lA~~l~Ad~liiltDV~G  136 (219)
                      ...+...        .++ +.+.++++.|.|||++|+.|.           .++++|++|+.+|.+|+|+++++||||||
T Consensus       100 ~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdG  179 (587)
T PRK07431        100 VGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPG  179 (587)
T ss_pred             cCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCc
Confidence            4322110        112 345678999999999986331           25679999999999999999999999999


Q ss_pred             cccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          137 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       137 v~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      ||++||+.+|++++|++++++|+.++   |.++||++|+.++.++|+|++|.|++. +         ..||+|.++.
T Consensus       180 Vyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~-~---------~~GT~i~~~~  246 (587)
T PRK07431        180 VLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS-D---------APGTLVTSPP  246 (587)
T ss_pred             cCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC-C---------CCCeEEEeCC
Confidence            99999999999999999999998774   888999999999999999999999872 2         3599998653

>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase

Probab=99.96  E-value=1.1e-28  Score=230.40  Aligned_cols=206  Identities=20%  Similarity=0.284  Sum_probs=156.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCC---------CcChHHHHHHHHHHHHHHH---HHHHHHhcCCCe
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL---------DRSSADYIGMLATVMNAIF---LQATMESIGIPT   69 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l---~~~~l~~~gi~a   69 (219)
                      +++++|++|++.|+++|||+ +|+.+.|+..++...+         +.......++++...+..|   +...|+++++.+
T Consensus        33 ~l~~~i~~l~~~g~~vilVs-SGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~i~~  111 (715)
T TIGR01092        33 SICEQLSELNSDGREVILVT-SGAVAFGRQRLRHRILVNSSFADLQKPQPELDGKACAAVGQSGLMALYETMFTQLDITA  111 (715)
T ss_pred             HHHHHHHHHHHCCCEEEEEc-cchHHhchHHhccchhccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Confidence            58999999999999999976 4555556565553221         1122334555655555544   456799999987


Q ss_pred             eEecccccccccch--HHH--HHHHHHHhCCCEEEEeCCC-----CC-------CccChHHHHHHHHHhcCCceEEeeec
Q 027731           70 RVQTAFRMSEVAEP--YIR--RRAVRHLEKGRVVIFAAGT-----GN-------PFFTTDTAAALRCAEINAEVVLKATN  133 (219)
Q Consensus        70 ~~~~~~~~~~~~~~--~~~--~~~~~~l~~g~ipIv~g~~-----g~-------~~~~sD~~Aa~lA~~l~Ad~liiltD  133 (219)
                      . |..++..++.++  +.+  ..+..+|+.|.|||+++++     +.       .++|||++|+++|.+++||+|+|+||
T Consensus       112 a-Q~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTD  190 (715)
T TIGR01092       112 A-QILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSD  190 (715)
T ss_pred             E-EEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeC
Confidence            5 556666666543  222  3355789999999999842     11       16899999999999999999999999


Q ss_pred             cCccccCCCCCCCCCcccccccHHHHh-h--------C--CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCC
Q 027731          134 VDGVYDDNPRRNPNARLLDTLTYQEVT-S--------K--DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERV  202 (219)
Q Consensus       134 V~Gv~~~dP~~~~~a~~i~~i~~~e~~-~--------~--g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~  202 (219)
                      |||||++||+ +|++++|++++..+.. .        .  |+|..|++++..|.++|++++|+|+.+++.|.++++|+..
T Consensus       191 VdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~  269 (715)
T TIGR01092       191 VEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKV  269 (715)
T ss_pred             CCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCCCcchHHHHhcCCCC
Confidence            9999999996 6899999988764322 1        1  4455699999999999999999999999999999999989


Q ss_pred             ceEEecCC
Q 027731          203 GTLIGGTW  210 (219)
Q Consensus       203 GT~i~~~~  210 (219)
                      ||+|.+++
T Consensus       270 GT~~~~~~  277 (715)
T TIGR01092       270 GTLFHEDA  277 (715)
T ss_pred             ceEecccc
Confidence            99997753

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.

>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria

Probab=99.96  E-value=6.1e-29  Score=200.03  Aligned_cols=169  Identities=24%  Similarity=0.333  Sum_probs=138.3

Q ss_pred             CCeEEEEECCchHHHhHHHhc-cCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHH
Q 027731           14 GIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRH   92 (219)
Q Consensus        14 g~~vviV~GgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~   92 (219)
                      |++++||+|||.||+.++... ..|+++...|+|+++++++|+.+++..+...+.       .      .   ..++..+
T Consensus        24 ~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~~~~~~~~-------~------~---~~~~~~~   87 (203)
T cd04240          24 GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLADLEPRLVA-------R------T---LAELTDV   87 (203)
T ss_pred             CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccCCcccc-------C------C---HHHHHHH
Confidence            789999999999987765443 478999999999999999999876532221110       0      0   1346678


Q ss_pred             HhCCCEEEEeCC------C---CCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhCC
Q 027731           93 LEKGRVVIFAAG------T---GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKD  163 (219)
Q Consensus        93 l~~g~ipIv~g~------~---g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g  163 (219)
                      ++.+.+||+.++      .   ..+++++|++|+++|..++|++|+++|||||||++|      +++++++++.|+..  
T Consensus        88 ~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i~~i~~~e~~~--  159 (203)
T cd04240          88 LERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLVNEIAAAELLG--  159 (203)
T ss_pred             HHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCccccCHHHhCC--
Confidence            899999999985      1   136799999999999999999999999999999864      78999999887653  


Q ss_pred             CCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCC-CCceEE
Q 027731          164 LSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLI  206 (219)
Q Consensus       164 ~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~-~~GT~i  206 (219)
                      .+.++..+++.+.++|++++|+|+++|+++.+++.|+ ..||+|
T Consensus       160 ~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I  203 (203)
T cd04240         160 ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI  203 (203)
T ss_pred             CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence            5566777788889999999999999999999999988 689975

Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.

>PRK08210 aspartate kinase I; Reviewed

Probab=99.96  E-value=2.1e-28  Score=216.05  Aligned_cols=198  Identities=24%  Similarity=0.318  Sum_probs=151.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECC-chHHH-----hHHHhcc---CCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731            2 AIAREVASVTRLGIEVAIVVGG-GNIFR-----GASAAGN---SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ   72 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~   72 (219)
                      +++++|++++++|+++||||+| |++++     .+..+..   ...++...+.+...++..+..++..+|+++|+++.++
T Consensus        21 ~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l  100 (403)
T PRK08210         21 MAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDLLMSCGEIISSVVFSNMLNENGIKAVAL  100 (403)
T ss_pred             HHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEe
Confidence            5789999999999988877733 33321     1111110   1123334455555677788888889999999999988


Q ss_pred             cccccccc-----cc---hHHH-HHHHHHHhCCCEEEEeCCC-----CC----CccChHHHHHHHHHhcCCceEEeeecc
Q 027731           73 TAFRMSEV-----AE---PYIR-RRAVRHLEKGRVVIFAAGT-----GN----PFFTTDTAAALRCAEINAEVVLKATNV  134 (219)
Q Consensus        73 ~~~~~~~~-----~~---~~~~-~~~~~~l~~g~ipIv~g~~-----g~----~~~~sD~~Aa~lA~~l~Ad~liiltDV  134 (219)
                      ++.+...+     ..   ...+ +.+..+++.+.|||++|+.     |.    .++++|++|+.+|.+|+|++++|||||
T Consensus       101 ~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV  180 (403)
T PRK08210        101 TGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDV  180 (403)
T ss_pred             chHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECC
Confidence            76653211     11   1122 3455788999999999962     21    245899999999999999999999999


Q ss_pred             CccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          135 DGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       135 ~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      ||||++||+.+|++++|++++++|+.++   |..++|++|+++|.++++|++|+|.+++.          .||+|.+.
T Consensus       181 ~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~----------~gT~I~~~  248 (403)
T PRK08210        181 DGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSDS----------PGTLITSL  248 (403)
T ss_pred             CCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEEEecCCCc----------CCcEEEec
Confidence            9999999999999999999999998874   88899999999999999999999998653          49999765

>PRK00942 acetylglutamate kinase; Provisional

Probab=99.96  E-value=5.7e-28  Score=203.93  Aligned_cols=201  Identities=22%  Similarity=0.284  Sum_probs=152.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHH-Hhcc-----CCCCcChH---HHHHHH-HHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSSA---DYIGML-ATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~-~~~~-----~~~~~~~~---~~~~~~-~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.+++.|.++|||||+|++.+... ..+.     .|++.+..   +...+. +..+|..++ +.|+++|+++.+
T Consensus        43 ~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~~~~~a~~G~l~~~i~-~~L~~~Gv~a~~  121 (283)
T PRK00942         43 AFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETMEVVEMVLAGKVNKELV-SLINKHGGKAVG  121 (283)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHHHHHHHHcCchHHHHH-HHHHhCCCCccc
Confidence            478999999999999999999998765432 2331     23333222   222232 246777766 799999999998


Q ss_pred             ecccccccccc---------------hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEEe
Q 027731           72 QTAFRMSEVAE---------------PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLK  130 (219)
Q Consensus        72 ~~~~~~~~~~~---------------~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~lii  130 (219)
                      +++.+...+..               ..++ +.+.++|+.|.|||+++.    .+ ..++++|++|+++|..|+|++|+|
T Consensus       122 l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~  201 (283)
T PRK00942        122 LSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLIL  201 (283)
T ss_pred             eeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEE
Confidence            77665322110               0123 335578999999999984    22 346899999999999999999999


Q ss_pred             eeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCC-cEEEEecCCCch-HHHHhcCCC
Q 027731          131 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNI-PVVVFNLNQPGN-IAKAIQGER  201 (219)
Q Consensus       131 ltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~-i~~~l~g~~  201 (219)
                      +|||||||++      +++++++++++|+.++       |+|..|+++|..+.++|+ +++|+|+.+|++ |.++++++.
T Consensus       202 ~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~  275 (283)
T PRK00942        202 LTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEG  275 (283)
T ss_pred             EECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCC
Confidence            9999999986      3689999999887653       455569999999999998 599999999999 789999999


Q ss_pred             CceEEecC
Q 027731          202 VGTLIGGT  209 (219)
Q Consensus       202 ~GT~i~~~  209 (219)
                      +||+|.++
T Consensus       276 ~GT~i~~~  283 (283)
T PRK00942        276 IGTMIVPD  283 (283)
T ss_pred             cceEEecC
Confidence            99999864

>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

Probab=99.96  E-value=8.6e-28  Score=203.02  Aligned_cols=156  Identities=26%  Similarity=0.307  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccc----ccc---chH---------HHHHHHHHHhC-CCEEEEeCCC
Q 027731           43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVA---EPY---------IRRRAVRHLEK-GRVVIFAAGT  105 (219)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~----~~~---~~~---------~~~~~~~~l~~-g~ipIv~g~~  105 (219)
                      .+.+-..++++++.+++.+|++.|+++.++++++..    ++.   ..|         ...++.+.++. +.|||++||.
T Consensus       111 ~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~Vv~GFi  190 (295)
T cd04259         111 RAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALLQKRLADGAQLIITQGFI  190 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhhhHHHHHHHHhcCCceeEeCCce
Confidence            455556778999999999999999999988765431    111   011         12345555654 6799999983


Q ss_pred             C---------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHH
Q 027731          106 G---------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAIT  173 (219)
Q Consensus       106 g---------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~  173 (219)
                      |         ..+++||++|+.+|.+++|+++++||||||||++||+.+|+++++++++++|+.++   |.+++|++|++
T Consensus       191 g~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~  270 (295)
T cd04259         191 ARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIP  270 (295)
T ss_pred             eeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHH
Confidence            3         24689999999999999999999999999999999999999999999999998765   88899999999


Q ss_pred             HHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          174 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       174 ~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      +|.+++||++|.|+++|+         ..||+|.
T Consensus       271 ~a~~~~ipi~i~~~~~p~---------~~GT~I~  295 (295)
T cd04259         271 PARRANIPMVVRSTERPE---------LSGTLIT  295 (295)
T ss_pred             HHHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence            999999999999999987         5799984

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.

>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis

Probab=99.96  E-value=5e-28  Score=203.91  Aligned_cols=201  Identities=20%  Similarity=0.275  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhH-HHhcc-----CCCCcChH---HHHHHH-HHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSSA---DYIGML-ATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~-~~~~~-----~~~~~~~~---~~~~~~-~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.+++.|.++|||||||++.+.+ ...+.     .|++.+..   +...+. +..+|..+ .+.|+++|+++++
T Consensus        34 ~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~~~~~~~~~~~g~ln~~l-~~~L~~~Gv~a~~  112 (279)
T cd04250          34 SFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETMEIVEMVLVGKVNKEI-VSLINRAGGKAVG  112 (279)
T ss_pred             HHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHH-HHHHHHcCCCcce
Confidence            57888998888899999999999976532 23331     23333332   222222 24688887 5799999999999


Q ss_pred             eccccccccc-c-------------h------HHHH-HHHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcCC
Q 027731           72 QTAFRMSEVA-E-------------P------YIRR-RAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINA  125 (219)
Q Consensus        72 ~~~~~~~~~~-~-------------~------~~~~-~~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~A  125 (219)
                      +++.+...+. +             .      .++. .+.++|+.|.|||+++.    .+. ..+++|.+|+++|.+|+|
T Consensus       113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A  192 (279)
T cd04250         113 LSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKA  192 (279)
T ss_pred             eecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCC
Confidence            8876532111 0             0      1223 34578999999999984    122 347999999999999999


Q ss_pred             ceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHH
Q 027731          126 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKA  196 (219)
Q Consensus       126 d~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~  196 (219)
                      ++|+|+|||||||++||.   ++++|++++++|+.++       |+|..|+++|..+.++|++ |+|+|+.+|+++ .++
T Consensus       193 ~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~  269 (279)
T cd04250         193 EKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEI  269 (279)
T ss_pred             CEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHH
Confidence            999999999999999883   3699999999887653       4555699999999999986 999999999975 789


Q ss_pred             hcCCCCceEE
Q 027731          197 IQGERVGTLI  206 (219)
Q Consensus       197 l~g~~~GT~i  206 (219)
                      |+++..||+|
T Consensus       270 ~~~~~~GT~i  279 (279)
T cd04250         270 FTDEGIGTMI  279 (279)
T ss_pred             hcCCCCccCC
Confidence            9998899975

In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=99.96  E-value=7.8e-28  Score=224.62  Aligned_cols=206  Identities=21%  Similarity=0.316  Sum_probs=155.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCC--------C--CcChHHH--HHHHHHHHHHHHHHHHHHhcCCCe
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG--------L--DRSSADY--IGMLATVMNAIFLQATMESIGIPT   69 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~--------~--~~~~~~~--~~~~~~~~~~~l~~~~l~~~gi~a   69 (219)
                      +++++|+++++.|+++|+|+ +|+.+.+...++...        +  +....+.  ..+.+......++..+|+++|+++
T Consensus        41 ~l~~~i~~l~~~g~~vvlVs-Sga~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~qa~aa~Gq~~l~~~~~~~f~~~g~~~  119 (718)
T PLN02418         41 ALCEQIKELNSDGYEVILVS-SGAVGVGRQRLRYRRLVNSSFADLQKPQMELDGKACAAVGQSELMALYDTLFSQLDVTA  119 (718)
T ss_pred             HHHHHHHHHHHCCCEEEEEe-cchHHHHHHHHhhhhhhhcccccCCCCcchHHHHHHHHhhHHHHHHHHHHHHHHcCCeE
Confidence            58999999999999999998 576665555444211        1  1222332  122345566677889999999987


Q ss_pred             eEecccccccccch--HHH--HHHHHHHhCCCEEEEeCCCC-----C-------CccChHHHHHHHHHhcCCceEEeeec
Q 027731           70 RVQTAFRMSEVAEP--YIR--RRAVRHLEKGRVVIFAAGTG-----N-------PFFTTDTAAALRCAEINAEVVLKATN  133 (219)
Q Consensus        70 ~~~~~~~~~~~~~~--~~~--~~~~~~l~~g~ipIv~g~~g-----~-------~~~~sD~~Aa~lA~~l~Ad~liiltD  133 (219)
                      . |...+..++.++  +.+  ..+..+|+.|.|||+++++.     .       .+++||++|+++|.+++||+|+|+||
T Consensus       120 ~-qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~li~~Td  198 (718)
T PLN02418        120 S-QLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSD  198 (718)
T ss_pred             E-EEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccccccCeecCcHHHHHHHHHHcCCCEEEEeec
Confidence            6 445555555432  222  33557899999999998521     1       34689999999999999999999999


Q ss_pred             cCccccCCCCCCCCCcccccccHHHHh----h-------CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCC
Q 027731          134 VDGVYDDNPRRNPNARLLDTLTYQEVT----S-------KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERV  202 (219)
Q Consensus       134 V~Gv~~~dP~~~~~a~~i~~i~~~e~~----~-------~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~  202 (219)
                      |||||++||+ +|++++|++++..+..    .       .|+|..|++++..+.++|++++|+||.+|+.+.++++|+..
T Consensus       199 VdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~  277 (718)
T PLN02418        199 VEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERV  277 (718)
T ss_pred             CCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHHCCCcEEEeCCCCcchHHHHhcCCCC
Confidence            9999999997 5899999998754321    1       14555599999999999999999999999999999999999


Q ss_pred             ceEEecCC
Q 027731          203 GTLIGGTW  210 (219)
Q Consensus       203 GT~i~~~~  210 (219)
                      ||+|.++.
T Consensus       278 GT~i~~~~  285 (718)
T PLN02418        278 GTLFHQDA  285 (718)
T ss_pred             ceEecccc
Confidence            99998753

>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like

Probab=99.96  E-value=2.2e-28  Score=203.75  Aligned_cols=198  Identities=23%  Similarity=0.297  Sum_probs=149.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHH-Hhcc-----CCCCcCh---HHHHHHHH-HHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGN-----SGLDRSS---ADYIGMLA-TVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~-~~~~-----~~~~~~~---~~~~~~~~-~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.+++.|.++|||||+|++.+.+. ..+.     .+++.+.   .+.+.+.. .++|..+ .+.|+++|+++.+
T Consensus        18 ~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln~~i-~~~L~~~Gv~a~~   96 (256)
T cd04238          18 AFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVNKEL-VSLLNRAGGKAVG   96 (256)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHH-HHHHHhCCCCCCC
Confidence            578899999999999999999999865432 3331     1222222   23333333 5788877 5789999999998


Q ss_pred             ecccccccccc-h---------H------HH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEE
Q 027731           72 QTAFRMSEVAE-P---------Y------IR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVL  129 (219)
Q Consensus        72 ~~~~~~~~~~~-~---------~------~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~li  129 (219)
                      +++.+...+.. +         |      ++ +.+..+|+.|.|||+++.    .+ ..++++|++|+++|..|+|++|+
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g~~~~~~~D~~A~~lA~~l~a~~li  176 (256)
T cd04238          97 LSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNVNADTAAGAIAAALKAEKLI  176 (256)
T ss_pred             cccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCCcEEEECHHHHHHHHHHHcCCCEEE
Confidence            87765322210 0         1      22 335578999999999984    12 34689999999999999999999


Q ss_pred             eeeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCC-cEEEEecCCCchHHHHhcC-C
Q 027731          130 KATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQG-E  200 (219)
Q Consensus       130 iltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~g-~  200 (219)
                      |+|||||||++ |     ++++++++++|+.++       |+|..|+++|..+.++|+ +++|+|++.|++|.+++.+ +
T Consensus       177 ~ltdv~Gv~~~-~-----~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l~~~~  250 (256)
T cd04238         177 LLTDVPGVLDD-P-----GSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLELFTDE  250 (256)
T ss_pred             EEeCCccccCC-C-----CCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHhcCC
Confidence            99999999987 2     689999999876543       455669999999999887 5999999999999988877 5


Q ss_pred             CCceEE
Q 027731          201 RVGTLI  206 (219)
Q Consensus       201 ~~GT~i  206 (219)
                      ..||+|
T Consensus       251 ~~GT~i  256 (256)
T cd04238         251 GIGTMI  256 (256)
T ss_pred             CCCCCC
Confidence            689975

Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC)

Probab=99.96  E-value=3e-28  Score=202.81  Aligned_cols=192  Identities=23%  Similarity=0.327  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhH-HHhcc--------CCC--CcC---hHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN--------SGL--DRS---SADYIGMLATVMNAIFLQATMESIGI   67 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~-~~~~~--------~~~--~~~---~~~~~~~~~~~~~~~l~~~~l~~~gi   67 (219)
                      +++++|+.+   |.++|||||||++.+.. ...+.        .|+  +.+   +.+.+.+....+|..++ +.|+++|+
T Consensus        15 ~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~~ln~~iv-~~L~~~Gi   90 (257)
T cd04251          15 KVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVMGLINKKIV-ARLHSLGV   90 (257)
T ss_pred             HHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHHHHHHHHHH-HHHHhCCC
Confidence            578888887   88999999999986542 23221        132  222   23344455578898876 49999999


Q ss_pred             CeeEeccccccccc------------------------c-hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHH
Q 027731           68 PTRVQTAFRMSEVA------------------------E-PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAA  116 (219)
Q Consensus        68 ~a~~~~~~~~~~~~------------------------~-~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~A  116 (219)
                      ++.++++.+...+.                        + ..++ +.+..+|++|.|||+++.    .| ..++++|++|
T Consensus        91 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~A  170 (257)
T cd04251          91 KAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRAA  170 (257)
T ss_pred             CceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHHH
Confidence            99988776532110                        0 0123 345578999999999885    22 2458999999


Q ss_pred             HHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-----CCCCchHHHHHHHHhCCCc-EEEEecCCC
Q 027731          117 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAITLCQENNIP-VVVFNLNQP  190 (219)
Q Consensus       117 a~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~k~~aa~~a~~~gi~-v~I~~g~~~  190 (219)
                      +.+|.+|+|++|+|+|||||||++       ++++++++++|+.++     |+|..|++++..+.++|++ ++|++++.|
T Consensus       171 ~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~  243 (257)
T cd04251         171 AAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARAD  243 (257)
T ss_pred             HHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCc
Confidence            999999999999999999999973       589999999887664     6677799999999999994 999999999


Q ss_pred             chHHHHhcCCCCceEE
Q 027731          191 GNIAKAIQGERVGTLI  206 (219)
Q Consensus       191 ~~i~~~l~g~~~GT~i  206 (219)
                      +.+.+++.|+  ||+|
T Consensus       244 ~~l~~~l~g~--gT~i  257 (257)
T cd04251         244 SPISSALNGG--GTVI  257 (257)
T ss_pred             cHHHHHHcCC--CcCC
Confidence            9999999874  8875

This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).

>TIGR00657 asp_kinases aspartate kinase

Probab=99.96  E-value=3e-27  Score=210.85  Aligned_cols=153  Identities=27%  Similarity=0.355  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEecccccccc-----cch----HHH-HHHHHHHhCCCEEEEeCCC-----CC----Cc
Q 027731           49 LATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AEP----YIR-RRAVRHLEKGRVVIFAAGT-----GN----PF  109 (219)
Q Consensus        49 ~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~-----~~~----~~~-~~~~~~l~~g~ipIv~g~~-----g~----~~  109 (219)
                      .++++|+.+++.+|+++|++++++++.+...+     .+.    ..+ ..+.++++.+.|||++||.     |.    .+
T Consensus       111 ~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgr  190 (441)
T TIGR00657       111 FGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGR  190 (441)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCC
Confidence            46789999999999999999998877664221     111    112 3455788999999999962     21    34


Q ss_pred             cChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEe
Q 027731          110 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN  186 (219)
Q Consensus       110 ~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~  186 (219)
                      ++||++|+.+|.+|+|++|++||||||||++||+.+|+++++++++++|+.++   |.+++|++|+.++.++++|++|.|
T Consensus       191 ggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~~~~~i~i~i~~  270 (441)
T TIGR00657       191 GGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKS  270 (441)
T ss_pred             CchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHHHHcCCeEEEec
Confidence            68999999999999999999999999999999999999999999999998764   788999999999999999999999


Q ss_pred             cCCCchHHHHhcCCCCceEEecCC
Q 027731          187 LNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       187 g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      +++|+         ..||+|.+..
T Consensus       271 ~~~~~---------~~GT~I~~~~  285 (441)
T TIGR00657       271 TFNPE---------APGTLIVAST  285 (441)
T ss_pred             CCCCC---------CCceEEEeCC
Confidence            99885         4699998653

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK06291 aspartate kinase; Provisional

Probab=99.96  E-value=3.4e-27  Score=211.49  Aligned_cols=158  Identities=27%  Similarity=0.341  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc-----cc--------hHHHHHHHHHHhCCCEEEEeCCC----
Q 027731           43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AE--------PYIRRRAVRHLEKGRVVIFAAGT----  105 (219)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~-----~~--------~~~~~~~~~~l~~g~ipIv~g~~----  105 (219)
                      .+.+...++++++.+++.+|++.|+++.++++.+.+.+     ..        .++...+..+++.+.+||++||.    
T Consensus       122 ~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~  201 (465)
T PRK06291        122 RDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETE  201 (465)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCC
Confidence            34455567889999999999999999999887664211     10        12223445678899999999962    


Q ss_pred             -C----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHh
Q 027731          106 -G----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQE  177 (219)
Q Consensus       106 -g----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~  177 (219)
                       |    ..+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++   |.+++|++|+.+|.+
T Consensus       202 ~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~  281 (465)
T PRK06291        202 EGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAME  281 (465)
T ss_pred             CCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHH
Confidence             2    23579999999999999999999999999999999999999999999999998775   889999999999999


Q ss_pred             CCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          178 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       178 ~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      ++||++|.|+++|+         ..||+|...
T Consensus       282 ~~i~i~i~~~~~~~---------~~gt~i~~~  304 (465)
T PRK06291        282 KGIPVRVKNTFNPE---------FPGTLITSD  304 (465)
T ss_pred             cCCcEEEecCCCCC---------CCceEEEec
Confidence            99999999999886         579999764

>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

Probab=99.96  E-value=3.7e-27  Score=199.56  Aligned_cols=157  Identities=22%  Similarity=0.316  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc-------chH---HHHHHHHHH-h-CCCEEEEeCCCC-----
Q 027731           44 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-------EPY---IRRRAVRHL-E-KGRVVIFAAGTG-----  106 (219)
Q Consensus        44 ~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~-------~~~---~~~~~~~~l-~-~g~ipIv~g~~g-----  106 (219)
                      +.+-..++++++.+++.+|++.|+++.++++.+.....       ..+   ..+.....+ + .+.|||++||.|     
T Consensus       126 d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G  205 (306)
T cd04247         126 DLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGG  205 (306)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCCC
Confidence            34445667899999999999999999988765542111       111   112222323 2 467999999833     


Q ss_pred             ----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCC
Q 027731          107 ----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENN  179 (219)
Q Consensus       107 ----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~g  179 (219)
                          ..+++||++|+.+|..|+|+++++||||||||++||+.+|++++|++++|+|+.++   |..++|++++.+|.+++
T Consensus       206 ~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~  285 (306)
T cd04247         206 LLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKAR  285 (306)
T ss_pred             CeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcC
Confidence                24689999999999999999999999999999999999999999999999998875   88899999999999999


Q ss_pred             CcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          180 IPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       180 i~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      ||++|.|.++|+         ..||+|+++
T Consensus       286 Ipi~i~nt~~P~---------~~GT~I~~~  306 (306)
T cd04247         286 IPIRIKNVENPR---------GEGTVIYPD  306 (306)
T ss_pred             CcEEEecCCCCC---------CCCcEEcCC
Confidence            999999999987         579999764

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.

>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

Probab=99.95  E-value=2.7e-27  Score=199.13  Aligned_cols=156  Identities=24%  Similarity=0.304  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc-chH--------HHHHHHHHHhCCCEEEEeCCCCC------
Q 027731           43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EPY--------IRRRAVRHLEKGRVVIFAAGTGN------  107 (219)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~-~~~--------~~~~~~~~l~~g~ipIv~g~~g~------  107 (219)
                      .+.+-..++++|+.+++.+|++.|+++..+++.+.+.+. ..+        ..+++.+.++.+.|||++||.|.      
T Consensus       112 ~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~  191 (288)
T cd04245         112 LDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDI  191 (288)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCCCCE
Confidence            355556778999999999999999999988876653221 111        12445677888899999998542      


Q ss_pred             ---CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCc
Q 027731          108 ---PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIP  181 (219)
Q Consensus       108 ---~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~  181 (219)
                         ++++||+.|+.+|.+|+|+.+.+||||||||++||+.+|+|+.++++||+|+.++   |..++|+.|..+|.+++||
T Consensus       192 ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ip  271 (288)
T cd04245         192 KTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIP  271 (288)
T ss_pred             EEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCc
Confidence               4689999999999999999999999999999999999999999999999999884   8899999999999999999


Q ss_pred             EEEEecCCCchHHHHhcCCCCceEEe
Q 027731          182 VVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       182 v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      ++|.|.++|+         ..||+|.
T Consensus       272 i~v~n~~~p~---------~~GT~I~  288 (288)
T cd04245         272 INIKNTNHPE---------APGTLIV  288 (288)
T ss_pred             EEEeeCCCCC---------CCCceeC
Confidence            9999999987         5799983

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.

>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis

Probab=99.95  E-value=2.9e-27  Score=196.55  Aligned_cols=197  Identities=19%  Similarity=0.219  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHH-CCCeEEEEECCchHHHh-HHHhcc-----CCCCcChHH---HHHHH-HHHHHHHHHHHHHHhcCCCee
Q 027731            2 AIAREVASVTR-LGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSAD---YIGML-ATVMNAIFLQATMESIGIPTR   70 (219)
Q Consensus         2 ~la~~i~~l~~-~g~~vviV~GgG~~~~~-~~~~~~-----~~~~~~~~~---~~~~~-~~~~~~~l~~~~l~~~gi~a~   70 (219)
                      +++++|+.+++ .+.++|||||||++.+. ....+.     +|++.+..+   .+.+. +..+|..+++.+ .++|++++
T Consensus        18 ~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~l-~~~Gv~a~   96 (252)
T cd04249          18 QLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQA-IKAGLKPV   96 (252)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHHH-HhCCCCce
Confidence            57888888864 56899999999997543 233331     344433333   33333 357888888655 58999999


Q ss_pred             Eeccccccccc------------c-hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEEee
Q 027731           71 VQTAFRMSEVA------------E-PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKA  131 (219)
Q Consensus        71 ~~~~~~~~~~~------------~-~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~liil  131 (219)
                      ++++.+...+.            + ..++ +.+.++|+.|.|||+++.    .+ ..++++|++|+++|..|+|+ ++|+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~l  175 (252)
T cd04249          97 GLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-LVLL  175 (252)
T ss_pred             eeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-EEEE
Confidence            88776532211            0 0122 335578999999999984    22 35689999999999999999 6899


Q ss_pred             eccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCC-CcEEEEecCCCchHHHHhcCCCCc
Q 027731          132 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVG  203 (219)
Q Consensus       132 tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~g-i~v~I~~g~~~~~i~~~l~g~~~G  203 (219)
                      |||||||++||      +++++++++|+.++       |+|..|++++..+.+.+ ++++|+|++.|+.+.++|+|+..|
T Consensus       176 tdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~G  249 (252)
T cd04249         176 SDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGEPVG  249 (252)
T ss_pred             eCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCCCCC
Confidence            99999998765      68999998876653       34556888888876664 689999999999999999999999


Q ss_pred             eEE
Q 027731          204 TLI  206 (219)
Q Consensus       204 T~i  206 (219)
                      |+|
T Consensus       250 T~I  252 (252)
T cd04249         250 TKI  252 (252)
T ss_pred             cCC
Confidence            986

There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).

>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

Probab=99.95  E-value=1e-26  Score=196.57  Aligned_cols=155  Identities=26%  Similarity=0.342  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc----ccc--h---HHHHHHHHHHhC-CCEEEEeCCCC-------
Q 027731           44 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE----VAE--P---YIRRRAVRHLEK-GRVVIFAAGTG-------  106 (219)
Q Consensus        44 ~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~----~~~--~---~~~~~~~~~l~~-g~ipIv~g~~g-------  106 (219)
                      +.+-..++++++.+++.+|++.|+++..+++.+...    ..+  +   ....++.++++. +.|||++||.+       
T Consensus       118 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~  197 (294)
T cd04257         118 AKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGET  197 (294)
T ss_pred             hhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCE
Confidence            333445678999999999999999999887655311    111  1   112344455555 89999999833       


Q ss_pred             --CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh---CCCCCchHHHHHHHHhCCCc
Q 027731          107 --NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS---KDLSVMDMTAITLCQENNIP  181 (219)
Q Consensus       107 --~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~---~g~~~~k~~aa~~a~~~gi~  181 (219)
                        ..+++||++|+.+|..++|+++++||||||||++||+.+|+++++++++|+|+.+   .|..++|+++..++.+++||
T Consensus       198 ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ip  277 (294)
T cd04257         198 TTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIP  277 (294)
T ss_pred             EECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCC
Confidence              2468899999999999999999999999999999999999999999999998877   48889999999999999999


Q ss_pred             EEEEecCCCchHHHHhcCCCCceEEe
Q 027731          182 VVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       182 v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      ++|.|+++|+         ..||+|.
T Consensus       278 i~i~~~~~p~---------~~GT~I~  294 (294)
T cd04257         278 ILIKNTFNPE---------APGTLIS  294 (294)
T ss_pred             EEEeeCCCCC---------CCCCEeC
Confidence            9999999987         5799984

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act

>PRK08373 aspartate kinase; Validated

Probab=99.95  E-value=1.5e-26  Score=198.45  Aligned_cols=157  Identities=25%  Similarity=0.396  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccc----cccchH-------HH-HHHHHHHhCCCEEEEeCCCCC---
Q 027731           43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAEPY-------IR-RRAVRHLEKGRVVIFAAGTGN---  107 (219)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~----~~~~~~-------~~-~~~~~~l~~g~ipIv~g~~g~---  107 (219)
                      .|.+.+.++++++.+++.+|+++|+++.++++++..    .+.+..       .+ +.+.++++.|.|||++||.+.   
T Consensus       102 ~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G  181 (341)
T PRK08373        102 RDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLNG  181 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCCC
Confidence            466677888999999999999999999988765431    111111       11 334567899999999997432   


Q ss_pred             -----CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCC
Q 027731          108 -----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENN  179 (219)
Q Consensus       108 -----~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~g  179 (219)
                           .+++||++|+.+|..|+|++++|||||||||++||+.+|+++++++++|+|+.++   |..++++.|..++.+ +
T Consensus       182 ~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~  260 (341)
T PRK08373        182 FRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-K  260 (341)
T ss_pred             eEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-C
Confidence                 3468999999999999999999999999999999999999999999999998874   777889999999999 9


Q ss_pred             CcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          180 IPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       180 i~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      +|++|.|.++|+          .||+|....
T Consensus       261 Ipi~v~~t~~~~----------~GT~I~~~~  281 (341)
T PRK08373        261 IPIIFGRTRDWR----------MGTLVSNES  281 (341)
T ss_pred             CcEEEecCCCCC----------CCcEEecCC
Confidence            999999988763          599997643

>PRK12353 putative amino acid kinase; Reviewed

Probab=99.95  E-value=7.9e-27  Score=198.85  Aligned_cols=200  Identities=22%  Similarity=0.259  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchH-HHhHHHhcc---CC--CCcChHHH-----HHHHHHHHHHHHHHHHHHhcCCCee
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNI-FRGASAAGN---SG--LDRSSADY-----IGMLATVMNAIFLQATMESIGIPTR   70 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~-~~~~~~~~~---~~--~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~gi~a~   70 (219)
                      +++++|+++++.|+++|||||||++ ++.+.....   ++  ....+.+.     .++++..++. .+...|..+|+...
T Consensus        30 ~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~qg~l~~~l~~-~~~~~l~~~~~~~~  108 (314)
T PRK12353         30 KTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVCGAMSQGYIGYHLQN-ALRNELLKRGIDKP  108 (314)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHHHHHHhHHHHHHHHH-HHHHHHHhcCCCcc
Confidence            5899999999999999999998875 443222111   10  01111111     2234444443 34567888877221


Q ss_pred             -----Eeccccccc--ccc-------------------------------hH------------HHHH-HHHHHhCCCEE
Q 027731           71 -----VQTAFRMSE--VAE-------------------------------PY------------IRRR-AVRHLEKGRVV   99 (219)
Q Consensus        71 -----~~~~~~~~~--~~~-------------------------------~~------------~~~~-~~~~l~~g~ip   99 (219)
                           .+...+..+  |..                               .+            ++.+ +..+|+.|.||
T Consensus       109 ~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~v~sp~p~~~v~~~~i~~lL~~g~Ip  188 (314)
T PRK12353        109 VATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRGYRRVVPSPKPVDIVEIEAIKTLVDAGQVV  188 (314)
T ss_pred             cceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCceeEeccCCCCccccccHHHHHHHHHCCCEE
Confidence                 122222221  100                               01            1233 34679999999


Q ss_pred             EEeCCCCC-------------CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC----
Q 027731          100 IFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----  162 (219)
Q Consensus       100 Iv~g~~g~-------------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----  162 (219)
                      |++|..+.             .++|+|++|+++|.+|+||+|+++|||||||+++|  +|++++|+++++.++.++    
T Consensus       189 V~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~--~~~a~~i~~i~~~e~~~~~~~~  266 (314)
T PRK12353        189 IAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG--KPNQKKLDEVTVSEAEKYIEEG  266 (314)
T ss_pred             EEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC--CCCCeECcCcCHHHHHHHHhcC
Confidence            99964221             14788999999999999999999999999999766  478999999998876542    


Q ss_pred             ----CCCCchHHHHHHHH--hCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          163 ----DLSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       163 ----g~~~~k~~aa~~a~--~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                          |+|..|+++|..+.  +.|++++|++   ++.+.++++|+ .||+|.+
T Consensus       267 ~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~~  314 (314)
T PRK12353        267 QFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIVK  314 (314)
T ss_pred             CcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence                34556999998877  6788999997   78888999998 8999964

>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP

Probab=99.95  E-value=1.4e-26  Score=195.36  Aligned_cols=199  Identities=28%  Similarity=0.397  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch----HHHhHHHhc----cCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEec
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN----IFRGASAAG----NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQT   73 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~   73 (219)
                      ..|++|+++.+.||+++||||+|+    +.++.....    ...++.-..+..++++.+++.. +.+.|.+.|++....+
T Consensus        29 ~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~~G~ig~~~~~a-l~~~l~~~~~~~~v~t  107 (308)
T cd04235          29 IAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMSQGMIGYMLQQA-LDNELPKRGIDKPVVT  107 (308)
T ss_pred             HHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchhhHHHHHHHHHH-HHHHHHHcCCCCceEE
Confidence            578999999999999999999994    444333221    1345555567788898888544 5678888887654333


Q ss_pred             cc-----cccc--ccch-------H------------------------------------HHHHHH-HHHhCCCEEEEe
Q 027731           74 AF-----RMSE--VAEP-------Y------------------------------------IRRRAV-RHLEKGRVVIFA  102 (219)
Q Consensus        74 ~~-----~~~~--~~~~-------~------------------------------------~~~~~~-~~l~~g~ipIv~  102 (219)
                      ..     +..|  |.+|       |                                    ++.+.+ .+|++|+|||++
T Consensus       108 ~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrvV~SP~P~~iv~~~~I~~Ll~~g~IpI~~  187 (308)
T cd04235         108 LVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRVVPSPKPKDIVEIEAIKTLVDNGVIVIAA  187 (308)
T ss_pred             EEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceeeeCCCCCccccCHHHHHHHHHCCCEEEEE
Confidence            22     2110  1000       0                                    112334 589999999999


Q ss_pred             CCCCCC-------------ccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-------
Q 027731          103 AGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------  162 (219)
Q Consensus       103 g~~g~~-------------~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------  162 (219)
                      |..|++             ++|+|++|+++|.+++||+|+++|||||||+++|  .|++++|++++++|+.++       
T Consensus       188 GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~i~~Is~~e~~~l~~~g~~~  265 (308)
T cd04235         188 GGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKALEQVTVEELEKYIEEGQFA  265 (308)
T ss_pred             CCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeEcCCcCHHHHHHHHhcCccc
Confidence            753332             3677999999999999999999999999999654  478999999999887643       


Q ss_pred             -CCCCchHHHHHHHHhC-CCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          163 -DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       163 -g~~~~k~~aa~~a~~~-gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                       |+|..|++++..+.+. +.+++|++   ++.+.+++.|+ .||+|.
T Consensus       266 tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~  308 (308)
T cd04235         266 PGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV  308 (308)
T ss_pred             cCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence             4566699999776665 46788876   67888999998 799983

Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).

>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

Probab=99.95  E-value=2.3e-26  Score=194.31  Aligned_cols=155  Identities=28%  Similarity=0.382  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc----ccch---HH--HHHHHHHHhC-CCEEEEeCCCC-----C-
Q 027731           44 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE----VAEP---YI--RRRAVRHLEK-GRVVIFAAGTG-----N-  107 (219)
Q Consensus        44 ~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~----~~~~---~~--~~~~~~~l~~-g~ipIv~g~~g-----~-  107 (219)
                      +.+-..++++++.+++.+|++.|+++..+++.+...    ..+.   +.  ...+..+++. +.|||++||.+     . 
T Consensus       117 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~  196 (293)
T cd04243         117 AEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGET  196 (293)
T ss_pred             hHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCE
Confidence            334446778999999999999999999887654311    1111   11  2234456665 89999999842     2 


Q ss_pred             ---CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh---CCCCCchHHHHHHHHhCCCc
Q 027731          108 ---PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS---KDLSVMDMTAITLCQENNIP  181 (219)
Q Consensus       108 ---~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~---~g~~~~k~~aa~~a~~~gi~  181 (219)
                         .+++||++|+.+|..++|+++++||||||||++||+.+|+++++++++++|+.+   .|..++|+.+..+|.+++||
T Consensus       197 ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~  276 (293)
T cd04243         197 TTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIP  276 (293)
T ss_pred             EEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCc
Confidence               357899999999999999999999999999999999999999999999999887   48889999999999999999


Q ss_pred             EEEEecCCCchHHHHhcCCCCceEEe
Q 027731          182 VVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       182 v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      ++|.|+++|+         ..||+|.
T Consensus       277 i~i~~~~~p~---------~~GT~I~  293 (293)
T cd04243         277 IFIKNTFNPE---------APGTLIS  293 (293)
T ss_pred             EEEecCCCCC---------CCCCEeC
Confidence            9999999987         5799984

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-

>TIGR00746 arcC carbamate kinase

Probab=99.94  E-value=1.3e-25  Score=190.39  Aligned_cols=198  Identities=22%  Similarity=0.320  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhcc----CCCCcChHHH-----HHHHHHHHHHHHHHHHHHhcCCCe---
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN----SGLDRSSADY-----IGMLATVMNAIFLQATMESIGIPT---   69 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~gi~a---   69 (219)
                      ++|++|++|+++||++|||||+|+.... ..++.    ...+..+++.     .++++.+++. .+.+.|.++|++.   
T Consensus        30 ~~a~~ia~l~~~g~~vviv~gngpqvG~-~~l~~~~~~~~~~~~p~~~~~A~~qg~lg~~~~~-~l~~~l~~~g~~~~v~  107 (310)
T TIGR00746        30 QTAPQIAKLIKRGYELVITHGNGPQVGN-LLLQNQAADSEVPAMPLDVLGAMSQGMIGYMLQQ-ALNNELPKRGMEKPVA  107 (310)
T ss_pred             HHHHHHHHHHHCCCEEEEEECChHHHHH-HHhccccccccCCCCcchHHHHhhHHHHHHHHHH-HHHHHHHhcCCCccce
Confidence            5799999999999999999998885433 22321    0111122222     2234444432 2345566788543   


Q ss_pred             --eEeccccccc--ccch-------H------------------------------------HHHH-HHHHHhCCC----
Q 027731           70 --RVQTAFRMSE--VAEP-------Y------------------------------------IRRR-AVRHLEKGR----   97 (219)
Q Consensus        70 --~~~~~~~~~~--~~~~-------~------------------------------------~~~~-~~~~l~~g~----   97 (219)
                        +.|...+..|  |.+|       |                                    ++.+ +..+|+.|.    
T Consensus       108 ~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rrvv~sp~p~~iv~~~~I~~LL~~G~iVI~  187 (310)
T TIGR00746       108 TVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRRVVPSPRPKDIVEAETIKTLVENGVIVIS  187 (310)
T ss_pred             EEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceEeecCCCchhhccHHHHHHHHHCCCEEEe
Confidence              2344444333  3211       0                                    1122 346899998    


Q ss_pred             -----EEEEeCCCC----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC------
Q 027731           98 -----VVIFAAGTG----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------  162 (219)
Q Consensus        98 -----ipIv~g~~g----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------  162 (219)
                           +||+++++.    ..++|+|++|+.+|.+++||+|+|+|||||||+++  .+|+++++++++.+|+.++      
T Consensus       188 ~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~--~~p~a~~i~~it~~e~~~~~~~g~~  265 (310)
T TIGR00746       188 SGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINY--GKPDEKALREVTVEELEDYYKAGHF  265 (310)
T ss_pred             CCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCC--CCCCCcCCcCcCHHHHHHHHhcCCc
Confidence                 444443221    12579999999999999999999999999999964  3578899999999887643      


Q ss_pred             --CCCCchHHHHHHHHhC-CCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          163 --DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       163 --g~~~~k~~aa~~a~~~-gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                        |+|..|+++|..+.+. +.+++|++   ++.+.++++|+ .||+|.
T Consensus       266 ~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~  309 (310)
T TIGR00746       266 AAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT  309 (310)
T ss_pred             CCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence              4455699999666665 56899987   67899999999 899996

The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.

>PRK09084 aspartate kinase III; Validated

Probab=99.94  E-value=7.9e-26  Score=201.55  Aligned_cols=157  Identities=23%  Similarity=0.317  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccc----cccc--h---HHH----HHHHHHHhCCCEEEEeCCCC---
Q 027731           43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAE--P---YIR----RRAVRHLEKGRVVIFAAGTG---  106 (219)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~----~~~~--~---~~~----~~~~~~l~~g~ipIv~g~~g---  106 (219)
                      .+.+-..++++++.+++.+|++.|+++.++++.+..    .+.+  +   ...    ..+.++++.+ +||++||.|   
T Consensus       109 ~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~  187 (448)
T PRK09084        109 TDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRFGRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDE  187 (448)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCCCcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCC
Confidence            455555778999999999999999999988765431    1111  1   111    2233456777 999999733   


Q ss_pred             ------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHh
Q 027731          107 ------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQE  177 (219)
Q Consensus       107 ------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~  177 (219)
                            ..+++||++|+.+|..|+|+++++||||||||++||+.+|+|+++++++|+|+.++   |..++|+.+..++.+
T Consensus       188 ~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~  267 (448)
T PRK09084        188 KGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVR  267 (448)
T ss_pred             CCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHH
Confidence                  24689999999999999999999999999999999999999999999999998875   888999999999999


Q ss_pred             CCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          178 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       178 ~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      +++|++|.|+++|+         ..||+|...
T Consensus       268 ~~i~i~i~~~~~~~---------~~GT~I~~~  290 (448)
T PRK09084        268 SNIPVFVGSSKDPE---------AGGTWICND  290 (448)
T ss_pred             cCCcEEEEeCCCCC---------CCceEEecC
Confidence            99999999999886         579999764

>PRK09034 aspartate kinase; Reviewed

Probab=99.94  E-value=2.3e-25  Score=199.03  Aligned_cols=159  Identities=23%  Similarity=0.292  Sum_probs=131.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc-chH--------HHHHHHHHHhCCCEEEEeCCCC-------
Q 027731           43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EPY--------IRRRAVRHLEKGRVVIFAAGTG-------  106 (219)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~-~~~--------~~~~~~~~l~~g~ipIv~g~~g-------  106 (219)
                      .+.+-..++++++.+++.+|++.|+++.++++++.+.+. ..+        ...++...+..+.|||++||.|       
T Consensus       112 ~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~~  191 (454)
T PRK09034        112 LDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQI  191 (454)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCCE
Confidence            355556778999999999999999999988876653221 111        1123334555678999999833       


Q ss_pred             --CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCc
Q 027731          107 --NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIP  181 (219)
Q Consensus       107 --~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~  181 (219)
                        ..+++||+.|+.+|.+|+|+++.+||||||||++||+.+|+|++++++||+|+.++   |..++|++|..+|.+++||
T Consensus       192 ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ip  271 (454)
T PRK09034        192 VTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIP  271 (454)
T ss_pred             EecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCC
Confidence              24689999999999999999999999999999999999999999999999998874   8999999999999999999


Q ss_pred             EEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          182 VVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       182 v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      ++|.|.++|+         ..||+|..+.
T Consensus       272 i~v~~~~~p~---------~~GT~I~~~~  291 (454)
T PRK09034        272 INIKNTNNPE---------DPGTLIVPDR  291 (454)
T ss_pred             EEEEcCCCCC---------CCccEEEecc
Confidence            9999999885         5799997643

>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=99.94  E-value=1e-25  Score=189.91  Aligned_cols=158  Identities=24%  Similarity=0.333  Sum_probs=130.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccc----ccc--ch---HHHHH---HHHHHhCCCEEEEeCCCC--
Q 027731           41 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVA--EP---YIRRR---AVRHLEKGRVVIFAAGTG--  106 (219)
Q Consensus        41 ~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~----~~~--~~---~~~~~---~~~~l~~g~ipIv~g~~g--  106 (219)
                      +..+.+.+.++++|+.+++.+|++.|+++.++++.+..    ++.  ++   ....+   .++.+..+.|||++||.|  
T Consensus       111 ~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~  190 (292)
T cd04258         111 ASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGST  190 (292)
T ss_pred             HhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccC
Confidence            34566777889999999999999999999988775541    111  11   12222   223345678999999843  


Q ss_pred             -------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHH
Q 027731          107 -------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ  176 (219)
Q Consensus       107 -------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~  176 (219)
                             ..+++||++|+.+|..++|+++++||||||||++||+.+|+++++++++|+|+.++   |..++|+.+..++.
T Consensus       191 ~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~  270 (292)
T cd04258         191 EKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAI  270 (292)
T ss_pred             CCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHH
Confidence                   24689999999999999999999999999999999999999999999999998874   88899999999999


Q ss_pred             hCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          177 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       177 ~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      +++||++|.|.++|+         ..||+|+
T Consensus       271 ~~~ipi~i~~~~~p~---------~~GT~I~  292 (292)
T cd04258         271 RKNIPVFVGSSKDPE---------AGGTLIT  292 (292)
T ss_pred             HcCCcEEEEeCCCCC---------CCCceeC
Confidence            999999999999987         5799984

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.

>PRK05925 aspartate kinase; Provisional

Probab=99.94  E-value=2.7e-25  Score=197.04  Aligned_cols=158  Identities=19%  Similarity=0.213  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc----cc-----hHHHHHHHH-HHhCCCEEEEeCCCC------
Q 027731           43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV----AE-----PYIRRRAVR-HLEKGRVVIFAAGTG------  106 (219)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~----~~-----~~~~~~~~~-~l~~g~ipIv~g~~g------  106 (219)
                      .+.+-..++++++.+++.+|++.|+++.++++++....    .+     ....+.+.+ .++.+.|||++||.|      
T Consensus       102 ~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~  181 (440)
T PRK05925        102 QARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGK  181 (440)
T ss_pred             hhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCC
Confidence            34455567899999999999999999998877654211    11     112222333 345678999999833      


Q ss_pred             ---CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCC
Q 027731          107 ---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNI  180 (219)
Q Consensus       107 ---~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi  180 (219)
                         ..+++||++|+++|.+++||.+++||||||||++||+.+|++++|++++|+|+.++   |...+++.+.++|.++|+
T Consensus       182 ~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~I  261 (440)
T PRK05925        182 TTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGI  261 (440)
T ss_pred             EEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCC
Confidence               25799999999999999999999999999999999999999999999999998765   778899999999999999


Q ss_pred             cEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          181 PVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       181 ~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      |++|.|+++|+         ..||+|.+.
T Consensus       262 pi~I~~~~~p~---------~~GT~i~~~  281 (440)
T PRK05925        262 PIFVTSTFDVT---------KGGTWIYAS  281 (440)
T ss_pred             cEEEecCCCCC---------CCccEEecC
Confidence            99999999987         479999864

>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families

Probab=99.94  E-value=2e-25  Score=184.07  Aligned_cols=182  Identities=26%  Similarity=0.349  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcC--------h---HHHHH-HHHHHHHH-----HHHHHHHHh
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRS--------S---ADYIG-MLATVMNA-----IFLQATMES   64 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~--------~---~~~~~-~~~~~~~~-----~l~~~~l~~   64 (219)
                      +++++|+.+.+.|+++|||||+|++.+.....  +++...        .   ..... .+...+|.     .++ ..+..
T Consensus        21 ~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~i~-~~~~~   97 (242)
T PF00696_consen   21 ELADDIALLSQLGIKVVVVHGGGSFTDELLEK--YGIEPKFVDGSRVTDIETGLIITMAAAAELNRDALLDEIV-SAGER   97 (242)
T ss_dssp             HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH--CTHTTSEETHHCHBHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHhCCCeEEEEECChhhcCchHHh--ccCCcccchhhhhhhhhhhHHHHHHHhhccccchhHHHHH-Hhhhh
Confidence            68899999999999999999999987754433  222221        1   11111 12233444     444 56888


Q ss_pred             cCCCeeEecccccccccc-----hHHHHHHHHHHhCCCEEEEeCC-----CCC----CccChHHHHHHHHHhcCCceEEe
Q 027731           65 IGIPTRVQTAFRMSEVAE-----PYIRRRAVRHLEKGRVVIFAAG-----TGN----PFFTTDTAAALRCAEINAEVVLK  130 (219)
Q Consensus        65 ~gi~a~~~~~~~~~~~~~-----~~~~~~~~~~l~~g~ipIv~g~-----~g~----~~~~sD~~Aa~lA~~l~Ad~lii  130 (219)
                      ++..+....+.+......     ....+.+.++|++|.|||++|+     .|.    +++++|++|+++|.+|+|++|+|
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~  177 (242)
T PF00696_consen   98 LGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIF  177 (242)
T ss_dssp             CTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEE
T ss_pred             hhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhh
Confidence            888877655443221111     1112446678999999999985     232    57999999999999999999999


Q ss_pred             eeccCccccCCCCCCCCCcccccccHHHHhhC--------CCCCchHHHHH-HHHhCCCcEEEEe
Q 027731          131 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAIT-LCQENNIPVVVFN  186 (219)
Q Consensus       131 ltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~~~~k~~aa~-~a~~~gi~v~I~~  186 (219)
                      +|||||||++||+.+|+++++++++++|+.++        |+|..|++++. .+.+.+++|+|+|
T Consensus       178 ~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n  242 (242)
T PF00696_consen  178 LTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN  242 (242)
T ss_dssp             EESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             hhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence            99999999999999999999999999998874        33444665555 5555578999986

In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....

>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative

Probab=99.94  E-value=5.2e-25  Score=187.90  Aligned_cols=153  Identities=24%  Similarity=0.373  Sum_probs=120.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccc----cccc-----hH--HH-HHHHHHHhCCCEEEEeCCCCC--
Q 027731           42 SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVAE-----PY--IR-RRAVRHLEKGRVVIFAAGTGN--  107 (219)
Q Consensus        42 ~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~----~~~~-----~~--~~-~~~~~~l~~g~ipIv~g~~g~--  107 (219)
                      ..+.+...++++++.+++     .|+++.++++++..    .+.+     +.  .+ +.+.++++.|.|||++|+.+.  
T Consensus        96 ~~d~I~s~GE~lSa~Lla-----~gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~l~~g~IpVv~Gf~~~~~  170 (327)
T TIGR02078        96 LRDYILSLGERLSAVIFA-----EGINGKVVDPWDIFFAKGDFGNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYGNLN  170 (327)
T ss_pred             HHHHHHHHHHHHHHHHHH-----ccCCcEEEcHHHHhccCCcCCceeechhhhHhhHHHHHHHHhCCcEEEEeCCccCCC
Confidence            345666677788877764     37888877655431    1111     11  11 234467889999999987431  


Q ss_pred             ------CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhC
Q 027731          108 ------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN  178 (219)
Q Consensus       108 ------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~  178 (219)
                            .+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++   |..++|+.|++++.++
T Consensus       171 G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~  250 (327)
T TIGR02078       171 GYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEY  250 (327)
T ss_pred             CeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHC
Confidence                  3468999999999999999999999999999999999999999999999998764   6668899999999999


Q ss_pred             CCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          179 NIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       179 gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      |+|++|.|.++|+          .||+|...
T Consensus       251 ~Ipi~I~~t~~~~----------~GT~I~~~  271 (327)
T TIGR02078       251 KIPVLFGRTRDWR----------MGTLISNR  271 (327)
T ss_pred             CCeEEEEeCCCcC----------CCcEEecC
Confidence            9999999998773          59999754

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.

>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts

Probab=99.93  E-value=1.4e-24  Score=182.74  Aligned_cols=197  Identities=21%  Similarity=0.315  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHH-hHHHhcc-----CCCCcChH---HHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFR-GASAAGN-----SGLDRSSA---DYIGMLATVMNAIFLQATMESIGIPTRVQ   72 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~-~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~gi~a~~~   72 (219)
                      +++++|+.|++.|+++|||||||+... .+.+.+.     .|++.++.   +...+....+|..+. +.|++ |+++.++
T Consensus        37 ~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~~l~~~~~~~g~v~~~l~-~~l~~-~~~a~~~  114 (280)
T cd04237          37 NIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALECVKEAAGAVRLEIE-ALLSM-GLPNSPM  114 (280)
T ss_pred             HHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHHHHHHHHHHHHHHHHHHH-HHHHh-hccccCc
Confidence            578999999999999999999998544 4445442     35554433   334444456676654 56654 7776533


Q ss_pred             c-----ccccc-------------cc---cc-hHHHHH-HHHHHhCCCEEEEeCC----CCCC-ccChHHHHHHHHHhcC
Q 027731           73 T-----AFRMS-------------EV---AE-PYIRRR-AVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEIN  124 (219)
Q Consensus        73 ~-----~~~~~-------------~~---~~-~~~~~~-~~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa~lA~~l~  124 (219)
                      +     ..+..             +.   .+ ..++.+ +..+|++|++||+++.    .|.. ++++|.+|+.+|.+|+
T Consensus       115 ~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~  194 (280)
T cd04237         115 AGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALK  194 (280)
T ss_pred             CCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcC
Confidence            2     11100             00   00 012333 4578999999999983    2333 4799999999999999


Q ss_pred             CceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC--------CCCCchHHHHHHHHhCCC-cEEEEecCCCchHH-
Q 027731          125 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIA-  194 (219)
Q Consensus       125 Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~i~-  194 (219)
                      |++|+|+|||||||++      +++++++++.+|+.++        |+|..|++++..+.+.|+ +++|++++.|+.+. 
T Consensus       195 a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~  268 (280)
T cd04237         195 ADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLL  268 (280)
T ss_pred             CCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHH
Confidence            9999999999999974      2589999998776642        456669999999999999 59999999999985 


Q ss_pred             HHhcCCCCceEE
Q 027731          195 KAIQGERVGTLI  206 (219)
Q Consensus       195 ~~l~g~~~GT~i  206 (219)
                      ++|+.++.||+|
T Consensus       269 elft~~g~GT~i  280 (280)
T cd04237         269 ELFTRDGVGTLI  280 (280)
T ss_pred             HHhcCCCCCCcC
Confidence            688888899975

Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase

Probab=99.93  E-value=1.2e-24  Score=193.57  Aligned_cols=201  Identities=18%  Similarity=0.224  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-----CCCCcChH---HHHHHHHHHHHHHHHHHHHHhcCCCeeE-
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDRSSA---DYIGMLATVMNAIFLQATMESIGIPTRV-   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~gi~a~~-   71 (219)
                      +++++|+.|+..|.++|||||||+ +...+..++.     .|++.++.   +...+++..+|..+. +.|++. +++.+ 
T Consensus        36 ~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~vn~~l~-~~l~~~-~~~~~~  113 (429)
T TIGR01890        36 NIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEASLEQAQQAAGTLRLAIE-ARLSMS-LSNTPM  113 (429)
T ss_pred             HHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHHhChHHHHHH-HHHHhc-CCcccc
Confidence            578999999999999999999998 4444555553     46665543   444556667887776 466655 43322 


Q ss_pred             ----ecccccc-------------cc---cch-HHHHH-HHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcC
Q 027731           72 ----QTAFRMS-------------EV---AEP-YIRRR-AVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEIN  124 (219)
Q Consensus        72 ----~~~~~~~-------------~~---~~~-~~~~~-~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~  124 (219)
                          +++.+..             +.   .+. .++.+ +..+|+.|++||+++-    .| ..++|+|.+|+.+|.+|+
T Consensus       114 ~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~  193 (429)
T TIGR01890       114 AGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLK  193 (429)
T ss_pred             cccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcC
Confidence                2222211             10   010 13444 4468999999999983    23 245999999999999999


Q ss_pred             CceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-----CCC-CchHHHHHHHHhCCCc-EEEEecCCCchHH-HH
Q 027731          125 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLS-VMDMTAITLCQENNIP-VVVFNLNQPGNIA-KA  196 (219)
Q Consensus       125 Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~-~~k~~aa~~a~~~gi~-v~I~~g~~~~~i~-~~  196 (219)
                      |++|+|+|||||||++      ++++|++++.+|+.++     ++| +.|++++..|.+.|++ ++|++++.|+.+. ++
T Consensus       194 a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el  267 (429)
T TIGR01890       194 ADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQEL  267 (429)
T ss_pred             CCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHH
Confidence            9999999999999974      2589999998776653     443 7799999999999985 9999999999985 56


Q ss_pred             hcCCCCceEEecCC
Q 027731          197 IQGERVGTLIGGTW  210 (219)
Q Consensus       197 l~g~~~GT~i~~~~  210 (219)
                      ++.++.||+|+.+.
T Consensus       268 ~~~~g~GT~i~~d~  281 (429)
T TIGR01890       268 FTRDGIGTSISKEA  281 (429)
T ss_pred             hcCCCCcceEeccc
Confidence            78888999998764

This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.

>TIGR00761 argB acetylglutamate kinase

Probab=99.93  E-value=5.5e-25  Score=180.67  Aligned_cols=177  Identities=21%  Similarity=0.265  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhcc-----CCCCcChH---HHHHHH-HHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSA---DYIGML-ATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~-----~~~~~~~~---~~~~~~-~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.+++.|.++|||||||++.+. ...++.     .+++....   +.+.+. +..+|..++ +.|+++|+++++
T Consensus        17 ~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~~~i~-~~L~~~G~~a~~   95 (231)
T TIGR00761        17 AFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVNKELV-ALLNKHGINAIG   95 (231)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchHHHHH-HHHHhCCCCccc
Confidence            6899999999999999999999987553 333331     23332222   222333 447887776 589999999998


Q ss_pred             eccccccccc-------------c-hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEEee
Q 027731           72 QTAFRMSEVA-------------E-PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKA  131 (219)
Q Consensus        72 ~~~~~~~~~~-------------~-~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~liil  131 (219)
                      +++.+...+.             + ..++ +.+.++|+.|.|||++|.    .+ ..++++|++|+.+|.+|+|++|+||
T Consensus        96 l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~l  175 (231)
T TIGR00761        96 LTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQALNVNADTAAGALAAALGAEKLVLL  175 (231)
T ss_pred             ccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEE
Confidence            7765431110             0 0123 345578999999999984    12 2468999999999999999999999


Q ss_pred             eccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEE
Q 027731          132 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVV  184 (219)
Q Consensus       132 tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I  184 (219)
                      |||||||++||     .++|++++++|+.++       |+|..|+++|..+.+.|++ ++|
T Consensus       176 tdv~Gv~~~d~-----~~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~i  231 (231)
T TIGR00761       176 TDVPGILNGDG-----QSLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVHI  231 (231)
T ss_pred             ECCCCeecCCC-----CeeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEEC
Confidence            99999999987     368999999886653       4455599999999999997 553

This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.

>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP)

Probab=99.93  E-value=2.5e-24  Score=178.39  Aligned_cols=195  Identities=16%  Similarity=0.218  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhH-HHhcc-----CCCCcCh---HHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGN-----SGLDRSS---ADYIGMLATVMNAIFLQATMESIGIPTRVQ   72 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~-~~~~~-----~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~   72 (219)
                      +++++|+.|++.|.++|||||||++.+.+ ...+.     .|++.++   .+.+.+....+|..++ +.|.++|++++++
T Consensus        16 ~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~iv-~~l~~~g~~a~~l   94 (248)
T cd04252          16 ELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFLEENLKLV-EALERNGARARPI   94 (248)
T ss_pred             HHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHhCCCCcccc
Confidence            68899999999999999999999976543 33332     2444333   3344444457888876 5788899999876


Q ss_pred             ccccc-------cccc---c-hHHHHH-HHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcCCceEEeeeccC
Q 027731           73 TAFRM-------SEVA---E-PYIRRR-AVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVD  135 (219)
Q Consensus        73 ~~~~~-------~~~~---~-~~~~~~-~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~liiltDV~  135 (219)
                      ++...       .++.   + ..++.+ +..+|+.|+|||++|.    .+. .++|+|.+|+.+|.+|+|++|+|+||||
T Consensus        95 ~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~  174 (248)
T cd04252          95 TSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNETG  174 (248)
T ss_pred             cCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEECCc
Confidence            54211       0111   1 012333 4578999999999984    232 4589999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcccccccHH-HHhhC-------CCCCchHHHHHHHHhC--CC-cEEEEecCCCchHH-HHhcCCCCc
Q 027731          136 GVYDDNPRRNPNARLLDTLTYQ-EVTSK-------DLSVMDMTAITLCQEN--NI-PVVVFNLNQPGNIA-KAIQGERVG  203 (219)
Q Consensus       136 Gv~~~dP~~~~~a~~i~~i~~~-e~~~~-------g~~~~k~~aa~~a~~~--gi-~v~I~~g~~~~~i~-~~l~g~~~G  203 (219)
                      |||++      +++++++++.. +..++       |+|..|++++..+.+.  ++ .++|++   ++.+. ++++.++.|
T Consensus       175 GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g~G  245 (248)
T cd04252         175 GLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSGAG  245 (248)
T ss_pred             ccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCCCC
Confidence            99975      25789999863 43321       5666799998888876  44 477776   57764 677877799


Q ss_pred             eEE
Q 027731          204 TLI  206 (219)
Q Consensus       204 T~i  206 (219)
                      |+|
T Consensus       246 T~i  248 (248)
T cd04252         246 TLI  248 (248)
T ss_pred             ccC
Confidence            975

The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th

>PLN02551 aspartokinase

Probab=99.93  E-value=9.5e-25  Score=196.90  Aligned_cols=161  Identities=24%  Similarity=0.301  Sum_probs=132.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc-----cchHH----HHHHHH----HH-hCCCEEEEeCCCC
Q 027731           41 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AEPYI----RRRAVR----HL-EKGRVVIFAAGTG  106 (219)
Q Consensus        41 ~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~-----~~~~~----~~~~~~----~l-~~g~ipIv~g~~g  106 (219)
                      +..+.+-..++++++.+++.+|++.|+++.++++++.+.+     .+..+    ..++.+    .+ +.+.|||++||.|
T Consensus       163 ~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig  242 (521)
T PLN02551        163 RTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLG  242 (521)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccc
Confidence            3446666678899999999999999999999887665321     11111    122222    22 3568999999843


Q ss_pred             C----------CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHH
Q 027731          107 N----------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAIT  173 (219)
Q Consensus       107 ~----------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~  173 (219)
                      .          .+++||++|+.+|.+|+|+++.|||||||||++||+.+|+++++++++|+|+.++   |..++|+++..
T Consensus       243 ~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~  322 (521)
T PLN02551        243 KGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMR  322 (521)
T ss_pred             cCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHH
Confidence            1          3588999999999999999999999999999999999999999999999998875   89999999999


Q ss_pred             HHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          174 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       174 ~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      +|.+++||++|.|.++|+         ..||+|....
T Consensus       323 pa~~~~Ipi~vknt~~p~---------~~GT~I~~~~  350 (521)
T PLN02551        323 PAREGDIPVRVKNSYNPT---------APGTLITKTR  350 (521)
T ss_pred             HHHHCCceEEEEecCCCC---------CCCcEEeccc
Confidence            999999999999999886         5799997643

>PRK12352 putative carbamate kinase; Reviewed

Probab=99.93  E-value=8.9e-24  Score=179.44  Aligned_cols=200  Identities=19%  Similarity=0.216  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc----CCCCcChHH-HHHH----HHHHHHHHHHHHHHHhcCCCe--
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN----SGLDRSSAD-YIGM----LATVMNAIFLQATMESIGIPT--   69 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~----~~~~~~~~~-~~~~----~~~~~~~~l~~~~l~~~gi~a--   69 (219)
                      +++++|+.|+..|+++|||||+|+ +...+.+.+.    .|++.++.+ ...+    ++..++..|. ..|.++|..+  
T Consensus        32 ~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~~v~~~~g~i~~~i~~~L~-~~l~~~g~~~~~  110 (316)
T PRK12352         32 AVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANCVADTQGGIGYLIQQALN-NRLARHGEKKAV  110 (316)
T ss_pred             HHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCee
Confidence            578899999999999999999998 5555444432    256666665 2222    3456777765 5777777543  


Q ss_pred             -----eEeccccccc---------c----------------------cc------------hHHHHH-HHHHHhCCCEEE
Q 027731           70 -----RVQTAFRMSE---------V----------------------AE------------PYIRRR-AVRHLEKGRVVI  100 (219)
Q Consensus        70 -----~~~~~~~~~~---------~----------------------~~------------~~~~~~-~~~~l~~g~ipI  100 (219)
                           +.+++.|..-         +                      ..            +.++.+ +..+|++|+|||
T Consensus       111 ~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi  190 (316)
T PRK12352        111 TVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGYRRVVASPEPKRIVEAPAIKALIQQGFVVI  190 (316)
T ss_pred             EEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCeEEecCCCCCceEEcHHHHHHHHHCCCEEE
Confidence                 2223221100         1                      00            012333 446899999944


Q ss_pred             Ee---------CCCCC-----CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC----
Q 027731          101 FA---------AGTGN-----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----  162 (219)
Q Consensus       101 v~---------g~~g~-----~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----  162 (219)
                      .+         +..+.     ..+|.|..|+.+|.+|+||+|+|+|||+|||.++|  +|++++|++++..|+.++    
T Consensus       191 ~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~--~~~~~li~~lt~~e~~~li~~g  268 (316)
T PRK12352        191 GAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFG--KPQQQALDRVDIATMTRYMQEG  268 (316)
T ss_pred             ecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCcccccccCHHHHHHHHhcC
Confidence            43         32221     23789999999999999999999999999998765  366789999999887653    


Q ss_pred             ----CCCCchHHHHHHHHhCCC-cEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          163 ----DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       163 ----g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                          |+|.+|+++|..+.+.|+ +++|++   ++.+.++|+|+ .||+|..
T Consensus       269 ~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~  315 (316)
T PRK12352        269 HFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK  315 (316)
T ss_pred             CcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence                457779999999888888 599996   77899999998 8999964

>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed

Probab=99.92  E-value=7.6e-24  Score=178.63  Aligned_cols=200  Identities=25%  Similarity=0.364  Sum_probs=140.0

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch----HHHhHHHhccCCCCc-----ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN----IFRGASAAGNSGLDR-----SSADYIGMLATVMNAIFLQATMESIGIPTRVQ   72 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~   72 (219)
                      ..|++|+++.++||++||+||.|+    +..........+.+.     -..+..++++.+++..| ...|.+.|++....
T Consensus        32 ~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~a~sqG~igy~l~~al-~~~l~~~g~~~~v~  110 (313)
T PRK12454         32 KTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAGAMTQGWIGYMIQQAL-RNELAKRGIEKQVA  110 (313)
T ss_pred             HHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhhhhhhHHHHHHHHHHH-HHHHHhcCCCCceE
Confidence            468899999999999999999998    333322222112222     23344566777665554 57888888765322


Q ss_pred             ccc-----cccc--ccch-------H------------------------------------HHHH-HHHHHhCCCEEEE
Q 027731           73 TAF-----RMSE--VAEP-------Y------------------------------------IRRR-AVRHLEKGRVVIF  101 (219)
Q Consensus        73 ~~~-----~~~~--~~~~-------~------------------------------------~~~~-~~~~l~~g~ipIv  101 (219)
                      +..     +..|  |.+|       |                                    ++.+ +..+|+.|.|||+
T Consensus       111 t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~RrvV~SP~P~~ive~~aI~~LLe~G~IvI~  190 (313)
T PRK12454        111 TIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGWRRVVPSPDPLGIVEIEVIKALVENGFIVIA  190 (313)
T ss_pred             EEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCceEEEeCCCCCccccCHHHHHHHHHCCCEEEE
Confidence            222     2111  1110       0                                    1122 3467999999999


Q ss_pred             eCCCCCC-------------ccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC------
Q 027731          102 AAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------  162 (219)
Q Consensus       102 ~g~~g~~-------------~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------  162 (219)
                      +|..|.+             ++|+|.+|+.+|.+|+||+|+|+|||||||++ |+ .|++++|++++.+|+.++      
T Consensus       191 ~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i~~It~~e~~~~i~~g~~  268 (313)
T PRK12454        191 SGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPLDKVTVEEAKKYYEEGHF  268 (313)
T ss_pred             eCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEccccCHHHHHHHHhcCCc
Confidence            9753322             35789999999999999999999999999986 32 578899999999887642      


Q ss_pred             --CCCCchHHHHHHHHhCC-CcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          163 --DLSVMDMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       163 --g~~~~k~~aa~~a~~~g-i~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                        |+|..|++++..+.+.+ .+++|++   ++.+.+++.|+ .||+|.+
T Consensus       269 ~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~  313 (313)
T PRK12454        269 KAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP  313 (313)
T ss_pred             CCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence              45667999997766665 5798884   67888999998 7999964

>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

Probab=99.92  E-value=2.5e-24  Score=180.50  Aligned_cols=157  Identities=13%  Similarity=0.150  Sum_probs=124.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHH----hCCCEEEEeCCCC--------CC
Q 027731           41 SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL----EKGRVVIFAAGTG--------NP  108 (219)
Q Consensus        41 ~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l----~~g~ipIv~g~~g--------~~  108 (219)
                      +..+.+...++++++.+++.+|++.|+++..+++.............++.+.+    ..+.|||++||.+        ..
T Consensus       131 ~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLG  210 (304)
T cd04248         131 AARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMREFD  210 (304)
T ss_pred             HHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcC
Confidence            34555666778899999999999999999975543221101000112232222    2567999999832        24


Q ss_pred             ccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCC--CCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEE
Q 027731          109 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVV  183 (219)
Q Consensus       109 ~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~--~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~  183 (219)
                      +++||++|+.+|.+++|+++.|||||+ ||++||+.+  |++++|+++||+|+.++   |.+++||++++++.+++||++
T Consensus       211 RGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~  289 (304)
T cd04248         211 RGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLR  289 (304)
T ss_pred             CCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEE
Confidence            689999999999999999999999996 999999999  58999999999998875   889999999999999999999


Q ss_pred             EEecCCCchHHHHhcCCCCceEEe
Q 027731          184 VFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       184 I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      |.|.++|+         ..||+|+
T Consensus       290 Vkntf~P~---------~~GTlIt  304 (304)
T cd04248         290 VKNTFEPD---------HPGTLIT  304 (304)
T ss_pred             EecCCCCC---------CCCceeC
Confidence            99999986         5799984

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.

>PRK09181 aspartate kinase; Validated

Probab=99.92  E-value=3.9e-24  Score=191.13  Aligned_cols=156  Identities=11%  Similarity=0.112  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccchHHHHHHHHHHh----CCCEEEEeCCCC--------CCccC
Q 027731           44 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE----KGRVVIFAAGTG--------NPFFT  111 (219)
Q Consensus        44 ~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~~~~~l~----~g~ipIv~g~~g--------~~~~~  111 (219)
                      +.+-..++++++.+++.+|++.|+++.++++.....-......+++.+.++    .+.|||++||.+        ..+++
T Consensus       140 D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRGG  219 (475)
T PRK09181        140 EMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRGY  219 (475)
T ss_pred             HHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCCh
Confidence            334446678999999999999999999855422111001112344444444    478999999832        24689


Q ss_pred             hHHHHHHHHHhcCCceEEeeeccCccccCCCCCC--CCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEe
Q 027731          112 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFN  186 (219)
Q Consensus       112 sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~--~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~  186 (219)
                      ||++|+.+|.+|+|+++.|||||+ ||++||+.+  |++++|+++||+|+.++   |.+++|+++..+|.+++||++|.|
T Consensus       220 SDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~n  298 (475)
T PRK09181        220 SEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKN  298 (475)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEec
Confidence            999999999999999999999997 999999999  68999999999998875   899999999999999999999999


Q ss_pred             cCCCchHHHHhcCCCCceEEecC
Q 027731          187 LNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       187 g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      .++|+         ..||+|..+
T Consensus       299 t~~p~---------~~GT~I~~~  312 (475)
T PRK09181        299 TFEPE---------HPGTLITKD  312 (475)
T ss_pred             CCCCC---------CCCeEEecC
Confidence            99886         579999764

>PRK05279 N-acetylglutamate synthase; Validated

Probab=99.92  E-value=8.9e-24  Score=188.59  Aligned_cols=201  Identities=19%  Similarity=0.283  Sum_probs=145.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHH-HhHHHhcc-----CCCCcChH---HHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN-----SGLDRSSA---DYIGMLATVMNAIFLQATMESIGIPTRVQ   72 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~-~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~gi~a~~~   72 (219)
                      +++++|+.|++.|.++|||||||+.. ..+...+.     .|++.++.   +...+....+|..+. +.|+ .|++++++
T Consensus        44 ~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~v~~~l~-~~l~-~g~~a~~~  121 (441)
T PRK05279         44 NIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALECVKQAAGELRLDIE-ARLS-MGLPNTPM  121 (441)
T ss_pred             HHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHHHHHHHHHHHHHHHHHHH-HHHh-ccCCCCcc
Confidence            57899999999999999999999854 44445442     35554433   334444456777764 5665 48887653


Q ss_pred             cc-----cccc-------------cc---cc-hHHHHH-HHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcC
Q 027731           73 TA-----FRMS-------------EV---AE-PYIRRR-AVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEIN  124 (219)
Q Consensus        73 ~~-----~~~~-------------~~---~~-~~~~~~-~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~  124 (219)
                      .+     .+..             ++   .+ ..++.+ +..+|++|+|||+++.    .|. .++|+|.+|+.||.+|+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~  201 (441)
T PRK05279        122 AGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALK  201 (441)
T ss_pred             cCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcC
Confidence            22     1110             00   00 012333 4468999999999873    222 35899999999999999


Q ss_pred             CceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC----------CCCCchHHHHHHHHhCCC-cEEEEecCCCchH
Q 027731          125 AEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----------DLSVMDMTAITLCQENNI-PVVVFNLNQPGNI  193 (219)
Q Consensus       125 Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----------g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~i  193 (219)
                      |++|+|+|||||||++      ++++|++++.+++.++          |+|..|++++..+.+.|+ +++|++++.|+.+
T Consensus       202 a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l  275 (441)
T PRK05279        202 ADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGAL  275 (441)
T ss_pred             CCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHH
Confidence            9999999999999963      3689999988775432          556679999999999999 5999999999998


Q ss_pred             HH-HhcCCCCceEEecCC
Q 027731          194 AK-AIQGERVGTLIGGTW  210 (219)
Q Consensus       194 ~~-~l~g~~~GT~i~~~~  210 (219)
                      .. +++.++.||+|+.+.
T Consensus       276 ~~~l~~~~g~GT~i~~~~  293 (441)
T PRK05279        276 LQELFTRDGIGTMIVMES  293 (441)
T ss_pred             HHHHhcCCCCceEEecCc
Confidence            75 555566899999863

>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]

Probab=99.91  E-value=2.6e-23  Score=159.51  Aligned_cols=178  Identities=22%  Similarity=0.308  Sum_probs=141.1

Q ss_pred             HHHCCCeEEEEECCchHHHhHHHhc-cCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccchHHHHH
Q 027731           10 VTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRR   88 (219)
Q Consensus        10 l~~~g~~vviV~GgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~   88 (219)
                      +.+-+.++++|+|||.||+..+... ..+++..+.++|.+.|+.+...++++.........+    .+            
T Consensus        22 le~~~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~lad~~~~~~~~tv----~e------------   85 (212)
T COG2054          22 LENLQRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFYLADLASRFVTDTV----TE------------   85 (212)
T ss_pred             HHhhcceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhhhccccccee----ec------------
Confidence            3333457999999999999877665 378999999999999999888888765554332222    11            


Q ss_pred             HHHHHhCCCEEEEeCC---------CCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHH
Q 027731           89 AVRHLEKGRVVIFAAG---------TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV  159 (219)
Q Consensus        89 ~~~~l~~g~ipIv~g~---------~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~  159 (219)
                      .....+.+..||+-|+         ...|.++||++|+++|+++++.++++.|||||||+.+|    +++++++|+..|+
T Consensus        86 p~~~i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~----~~kLv~eI~A~dl  161 (212)
T COG2054          86 PEDGIKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDP----KGKLVREIRASDL  161 (212)
T ss_pred             hhhccCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCC----cchhhhhhhHhhc
Confidence            0122334455555553         13688999999999999999999999999999999876    4699999999988


Q ss_pred             hhCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCC-CceEEec
Q 027731          160 TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLIGG  208 (219)
Q Consensus       160 ~~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~-~GT~i~~  208 (219)
                      .. |...+++..-+.+.+.+++++++|+..|+++.++++|++ +||+|.+
T Consensus       162 ~~-~~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg  210 (212)
T COG2054         162 KT-GETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG  210 (212)
T ss_pred             cc-CcccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEeC
Confidence            76 666789999999999999999999999999999999866 6999976

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=99.91  E-value=6.9e-24  Score=199.78  Aligned_cols=157  Identities=20%  Similarity=0.189  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc---chH-----HHHHHHHHHhC--CCEEEEeCCCC------
Q 027731           43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA---EPY-----IRRRAVRHLEK--GRVVIFAAGTG------  106 (219)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~---~~~-----~~~~~~~~l~~--g~ipIv~g~~g------  106 (219)
                      .+.+-..++++++.+++.+|++.|+++.++++.+.....   ...     ..+++.++++.  +.+||++||.|      
T Consensus       122 ~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~  201 (810)
T PRK09466        122 YAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGE  201 (810)
T ss_pred             hhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCC
Confidence            345555678999999999999999999988765531111   111     12344555554  47999999843      


Q ss_pred             ---CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCC
Q 027731          107 ---NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNI  180 (219)
Q Consensus       107 ---~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi  180 (219)
                         ..+++||++|+.+|..|+|+++.|||||||||++||+.+|++++|++++|+|+.++   |.+++|+++..+|.+++|
T Consensus       202 ~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~I  281 (810)
T PRK09466        202 TVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDI  281 (810)
T ss_pred             EEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCC
Confidence               24688999999999999999999999999999999999999999999999998875   899999999999999999


Q ss_pred             cEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          181 PVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       181 ~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      |++|.|.++|+         ..||+|..
T Consensus       282 pi~V~ntf~p~---------~~GT~I~~  300 (810)
T PRK09466        282 DLQLRCSYQPE---------QGSTRIER  300 (810)
T ss_pred             eEEEecCCCCC---------CCceEEec
Confidence            99999999886         57999975

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=200.41  Aligned_cols=153  Identities=25%  Similarity=0.325  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEeccccccccc--------chH--------HHHHHH-HHHhCC-CEEEEeCCCC----
Q 027731           49 LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA--------EPY--------IRRRAV-RHLEKG-RVVIFAAGTG----  106 (219)
Q Consensus        49 ~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~--------~~~--------~~~~~~-~~l~~g-~ipIv~g~~g----  106 (219)
                      .++++++.|++.+|++.|+++..+++.+.....        .++        .+.++. .+++.+ .|||++||.|    
T Consensus       125 ~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~  204 (861)
T PRK08961        125 QGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARNAD  204 (861)
T ss_pred             ehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeCCC
Confidence            456899999999999999999988765432110        011        122233 344444 4999999843    


Q ss_pred             -----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhC
Q 027731          107 -----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN  178 (219)
Q Consensus       107 -----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~  178 (219)
                           ..+++||++|+.+|..|+|+++++||||||||++||+.+|+++++++++++|+.++   |.+++|++|+++|.++
T Consensus       205 g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~  284 (861)
T PRK08961        205 GGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDA  284 (861)
T ss_pred             CCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHC
Confidence                 24689999999999999999999999999999999999999999999999998764   8889999999999999


Q ss_pred             CCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          179 NIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       179 gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      |||++|.|+++|+         ..||+|..+.
T Consensus       285 ~i~i~v~~~~~~~---------~~gT~I~~~~  307 (861)
T PRK08961        285 GIPMAILDTERPD---------LSGTSIDGDA  307 (861)
T ss_pred             CCCEEEEeCCCCC---------CCccEEeCCC
Confidence            9999999999885         5799997653

>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals

Probab=99.91  E-value=2.9e-23  Score=172.93  Aligned_cols=187  Identities=10%  Similarity=0.125  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc-
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~-   80 (219)
                      +++++|+-|++-|.++|||||||+.....  +.    +.+... ..+.....|..++ ..|+++|++++++++.. ..+ 
T Consensus        55 ~l~~dla~L~~lGl~~VlVHGggp~i~~~--l~----~~~~~~-~~~v~~~~n~~Lv-~~L~~~G~~A~gl~g~~-~~i~  125 (271)
T cd04236          55 SLSFGLAFLQRMDMKLLVVMGLSAPDGTN--MS----DLELQA-ARSRLVKDCKTLV-EALQANSAAAHPLFSGE-SVLQ  125 (271)
T ss_pred             HHHHHHHHHHHCCCeEEEEeCCChHHhhh--hc----CCcchh-eehhHHHHHHHHH-HHHHhCCCCeeeecCcc-ceEE
Confidence            68999999999999999999999853311  11    111111 2222225677765 68899999999887552 111 


Q ss_pred             ----------cc-hHHHHH-HHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcCCceEEeeeccCccccCCCC
Q 027731           81 ----------AE-PYIRRR-AVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR  143 (219)
Q Consensus        81 ----------~~-~~~~~~-~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~  143 (219)
                                .+ ..++.+ +..+|+.|+|||+++.    .|. .++++|.+|+.+|.+|+|++|+|+||++|||++   
T Consensus       126 a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~---  202 (271)
T cd04236         126 AEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQ---  202 (271)
T ss_pred             EEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECC---
Confidence                      00 113444 4468999999999983    333 458999999999999999999999999999974   


Q ss_pred             CCCCCcccccccH-HHHhhC-------CCC---CchHHHHHHHHhCCCcEEEEecCCCchH-HHHhcCCCCceEE
Q 027731          144 RNPNARLLDTLTY-QEVTSK-------DLS---VMDMTAITLCQENNIPVVVFNLNQPGNI-AKAIQGERVGTLI  206 (219)
Q Consensus       144 ~~~~a~~i~~i~~-~e~~~~-------g~~---~~k~~aa~~a~~~gi~v~I~~g~~~~~i-~~~l~g~~~GT~i  206 (219)
                         +.++|++++. +|+.++       |+|   +.|++++..+...|+.|+|++   |+.+ .++|+..+.||+|
T Consensus       203 ---~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~  271 (271)
T cd04236         203 ---KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLLTELFSHKGSGTLF  271 (271)
T ss_pred             ---CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence               2579999995 776653       677   679999999999999999997   6666 5899988899986

Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).

>PRK12686 carbamate kinase; Reviewed

Probab=99.90  E-value=2.1e-22  Score=170.16  Aligned_cols=199  Identities=18%  Similarity=0.247  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHH-Hhcc--CCCCcChHHHHHH-----HHHHHHHHHHHHHHHhcCCCe--e
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGAS-AAGN--SGLDRSSADYIGM-----LATVMNAIFLQATMESIGIPT--R   70 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~-~~~~--~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~gi~a--~   70 (219)
                      ..|++|+.|.+.||++||+||+|+ ++..+. ....  ...+.-+++...+     .+-+++..| .+.|.+.++..  +
T Consensus        30 ~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~sqg~iGy~~~q~l-~~~l~~r~~~~~v~  108 (312)
T PRK12686         30 EAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAMSQGMIGYWLQNAL-NNELTERGIDKPVI  108 (312)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhhccchhhHHHHHHH-HHHHHhcCCCCCce
Confidence            468999999999999999999998 542221 2111  1234445555433     333344343 45666555432  1


Q ss_pred             ---Eeccccccc---------------------------------ccchH------------HHHHH-HHHHhCCCEEEE
Q 027731           71 ---VQTAFRMSE---------------------------------VAEPY------------IRRRA-VRHLEKGRVVIF  101 (219)
Q Consensus        71 ---~~~~~~~~~---------------------------------~~~~~------------~~~~~-~~~l~~g~ipIv  101 (219)
                         -+...+..|                                 ..+-|            ++.++ ..+|+.|+|||.
T Consensus       109 ~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rrvV~sP~P~~ive~~~I~~Ll~~G~IpI~  188 (312)
T PRK12686        109 TLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRRVVPSPKPQEIIEHDTIRTLVDGGNIVIA  188 (312)
T ss_pred             EEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEEeeCCCCCccccCHHHHHHHHHCCCEEEE
Confidence               122222110                                 00000            23333 468899998887


Q ss_pred             eCCC--------C----C-CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC------
Q 027731          102 AAGT--------G----N-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------  162 (219)
Q Consensus       102 ~g~~--------g----~-~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------  162 (219)
                      ++..        +    . .++|+|.+|+.||.+|+||+|+|+|||||||++ |. .|++++|++++.+|+..+      
T Consensus       189 ~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~-~~-~p~ak~I~~I~~~e~~~li~~g~~  266 (312)
T PRK12686        189 CGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN-FN-KPNQQKLDDITVAEAKQYIAEGQF  266 (312)
T ss_pred             eCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC-CC-CCCCeECCccCHHHHHHHhhCCCc
Confidence            6431        1    1 267999999999999999999999999999995 53 478899999999887643      


Q ss_pred             --CCCCchHHHHHHHHhC--CCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          163 --DLSVMDMTAITLCQEN--NIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       163 --g~~~~k~~aa~~a~~~--gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                        |+|..|++||..+.+.  |.+++|++   ++.+.++++|+ .||+|.
T Consensus       267 ~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~  311 (312)
T PRK12686        267 APGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT  311 (312)
T ss_pred             cCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence              5566799999998865  56788886   67888999987 799995

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=99.90  E-value=6.3e-23  Score=194.26  Aligned_cols=159  Identities=27%  Similarity=0.318  Sum_probs=130.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc----ccch-----HHHHHHHHHH-hCCCEEEEeCCCC-----
Q 027731           42 SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE----VAEP-----YIRRRAVRHL-EKGRVVIFAAGTG-----  106 (219)
Q Consensus        42 ~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~----~~~~-----~~~~~~~~~l-~~g~ipIv~g~~g-----  106 (219)
                      ..+.+-..++++++.+++.+|++.|+++.++++.+...    +.+.     ....++.+++ +.+.|||++||.+     
T Consensus       118 ~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G  197 (819)
T PRK09436        118 VNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKG  197 (819)
T ss_pred             hhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCC
Confidence            34555567889999999999999999999887654311    1111     1123344443 4688999999833     


Q ss_pred             ----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCC
Q 027731          107 ----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENN  179 (219)
Q Consensus       107 ----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~g  179 (219)
                          ..+++||++|+.+|..++|+.+++||||||||++||+.+|+++++++++|+|+.++   |.+++|++|+.+|.+++
T Consensus       198 ~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~  277 (819)
T PRK09436        198 ELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQ  277 (819)
T ss_pred             CEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCC
Confidence                14578999999999999999999999999999999999999999999999998874   89999999999999999


Q ss_pred             CcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          180 IPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       180 i~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      ||++|.|+++|+         ..||+|..+
T Consensus       278 Ipi~i~n~~~p~---------~~GT~I~~~  298 (819)
T PRK09436        278 IPCLIKNTFNPQ---------APGTLIGAE  298 (819)
T ss_pred             ceEEEccCCCCC---------CCceEEEec
Confidence            999999999887         579999764

>PRK12354 carbamate kinase; Reviewed

Probab=99.89  E-value=1.2e-21  Score=164.89  Aligned_cols=117  Identities=27%  Similarity=0.278  Sum_probs=92.3

Q ss_pred             HHHHHhCCCEEEEeC---------CCCC-----CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccc
Q 027731           89 AVRHLEKGRVVIFAA---------GTGN-----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL  154 (219)
Q Consensus        89 ~~~~l~~g~ipIv~g---------~~g~-----~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i  154 (219)
                      +..+|++|.|||.+|         +++.     .++|+|.+|+.||.+++||+|+|+|||||||++++  .|++++|+++
T Consensus       168 I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~i~~i  245 (307)
T PRK12354        168 IRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRAIAQA  245 (307)
T ss_pred             HHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeECCCC
Confidence            446889999755543         2221     25799999999999999999999999999999753  4788999999


Q ss_pred             cHHHHhhC----CCCCchHHHHHHHHhCCC-cEEEEecCCCchHHHHhcCCCCceEEecCCC
Q 027731          155 TYQEVTSK----DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGGTWN  211 (219)
Q Consensus       155 ~~~e~~~~----g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~  211 (219)
                      +.+|+.++    |+|..|++++..+.+.+. +++|.+   ++.+.+++.|+ .||+|.++..
T Consensus       246 t~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~~---~~~l~~al~G~-~GT~I~~~~~  303 (307)
T PRK12354        246 TPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIGS---LEDIQAILAGE-AGTRISPETA  303 (307)
T ss_pred             CHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEECC---HHHHHHHHCCC-CceEEecCCC
Confidence            99888764    567779999977666544 688853   66788999887 7999987543

>PRK04531 acetylglutamate kinase; Provisional

Probab=99.87  E-value=9.9e-21  Score=165.84  Aligned_cols=175  Identities=18%  Similarity=0.263  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHH-HhHHHhcc-----CCCCcChHHHHHH---HHHHHHHHHHHHHHHhcCCCeeEe
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN-----SGLDRSSADYIGM---LATVMNAIFLQATMESIGIPTRVQ   72 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~-~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~gi~a~~~   72 (219)
                      +++++|+.|++.|.++|||||||+.. ..+...+.     .|++.++.+.+..   ....+|..++..            
T Consensus        54 ~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~~vn~~lv~~------------  121 (398)
T PRK04531         54 ALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQRSNLDLVEA------------  121 (398)
T ss_pred             HHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHHHHHHHHHHH------------
Confidence            58899999999999999999999854 44445442     3555444433332   222333322211            


Q ss_pred             cccccccccchHHHHHHHHHHhCCCEEEEeCC----CCCC-ccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCC
Q 027731           73 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN  147 (219)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~  147 (219)
                                      +..+|+.|.|||+++.    .|.. ++++|.+|+.+|.+|+|++|+|+|||+|||+.+      
T Consensus       122 ----------------I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~------  179 (398)
T PRK04531        122 ----------------VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDAD------  179 (398)
T ss_pred             ----------------HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCC------
Confidence                            3468999999999874    2333 489999999999999999999999999999743      


Q ss_pred             CcccccccH-HHHhhC-------CCCCchHHHHHHHHhCCCcEEEEecCCCchHH-HHhcCCCCceEEecCC
Q 027731          148 ARLLDTLTY-QEVTSK-------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLIGGTW  210 (219)
Q Consensus       148 a~~i~~i~~-~e~~~~-------g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~-~~l~g~~~GT~i~~~~  210 (219)
                      ++++++++. ++...+       |+|..|++++..+.+....+++++...|+.+. ++++.++.||+|....
T Consensus       180 g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~  251 (398)
T PRK04531        180 GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKGSGTLVRRGE  251 (398)
T ss_pred             CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCCCCeEEecCC
Confidence            578999985 344332       55666999999988653357888888899986 5677777899998643

>PRK09411 carbamate kinase; Reviewed

Probab=99.86  E-value=2.7e-20  Score=155.61  Aligned_cols=198  Identities=22%  Similarity=0.262  Sum_probs=130.8

Q ss_pred             HHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-CCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCe--eE---eccc
Q 027731            3 IAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-SGLDRSSADYIGMLATVMNAIFLQATMESIGIPT--RV---QTAF   75 (219)
Q Consensus         3 la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a--~~---~~~~   75 (219)
                      -|+.|+++.++ |++||+||-|+ ++..+..... ...+.-+++..++...-+-.+++++.|...+++.  +.   +...
T Consensus        32 ~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~~~~~~pld~~~a~sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~V  110 (297)
T PRK09411         32 AVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEV  110 (297)
T ss_pred             HHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhcCCCCCCchhhhhhcccHHHHHHHHHHHHcCCCCCeEEEEEEEEE
Confidence            47889999987 99999999898 4332211111 1224445555443222122234455666555432  11   1222


Q ss_pred             cccc--ccc-----------------------------hH-------------HHHH-HHHHHhCCCEEEEeCC------
Q 027731           76 RMSE--VAE-----------------------------PY-------------IRRR-AVRHLEKGRVVIFAAG------  104 (219)
Q Consensus        76 ~~~~--~~~-----------------------------~~-------------~~~~-~~~~l~~g~ipIv~g~------  104 (219)
                      +..|  |.+                             ++             ++.+ +..+|++|.|||.+|.      
T Consensus       111 d~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~  190 (297)
T PRK09411        111 SPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVT  190 (297)
T ss_pred             CCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCCCcceECHHHHHHHHHCCCEEEecCCCCCCeE
Confidence            2111  000                             00             1233 4468999999777642      


Q ss_pred             ---CC-CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC----CCCCchHHHHHHHH
Q 027731          105 ---TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----DLSVMDMTAITLCQ  176 (219)
Q Consensus       105 ---~g-~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----g~~~~k~~aa~~a~  176 (219)
                         .+ ..++|+|.+|+.+|..|+||+|+|+|||||||+++  ..|++++|++++.+|+..+    |+|..|++++..+.
T Consensus       191 ~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~--~~p~~~~I~~it~~e~~~~~~~~GgM~pKVeAA~~~v  268 (297)
T PRK09411        191 EDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENW--GTPQQRAIRHATPDELAPFAKADGAMGPKVTAVSGYV  268 (297)
T ss_pred             EcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCC--CCCCCcCCCCcCHHHHHHhccCCCCcHHHHHHHHHHH
Confidence               22 23689999999999999999999999999999864  3577899999999888654    67788999996555


Q ss_pred             h-CCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          177 E-NNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       177 ~-~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      + .|.+++|.+   ++.+.+++.|+ .||+|.
T Consensus       269 ~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~  296 (297)
T PRK09411        269 RSRGKPAWIGA---LSRIEETLAGE-AGTCIS  296 (297)
T ss_pred             HhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence            5 466788864   67788899987 799985

>PLN02825 amino-acid N-acetyltransferase

Probab=99.86  E-value=2.6e-20  Score=167.27  Aligned_cols=202  Identities=16%  Similarity=0.207  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-----CCCCcChHHHH---HHHHHHHHHHHHHH--------HHHh
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDRSSADYI---GMLATVMNAIFLQA--------TMES   64 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~l~~~--------~l~~   64 (219)
                      +++.+|+.|+..|.++|||||||+ +...+...+.     .|++.++.+.+   ..++..++..+.+.        .|++
T Consensus        36 ~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~  115 (515)
T PLN02825         36 NILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSAALQASMEAAGKIRVMIEAKLSPGPSIPNLRR  115 (515)
T ss_pred             HHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHHHHHHHHHHHHhhccccchhHHHh
Confidence            578999999999999999999998 5555555553     46666554433   33555677776643        3688


Q ss_pred             cCCCe----eEecccccc-------------ccc---c-hHHHHH-HHHHHhCCCEEEEeCC----CCCC-ccChHHHHH
Q 027731           65 IGIPT----RVQTAFRMS-------------EVA---E-PYIRRR-AVRHLEKGRVVIFAAG----TGNP-FFTTDTAAA  117 (219)
Q Consensus        65 ~gi~a----~~~~~~~~~-------------~~~---~-~~~~~~-~~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa  117 (219)
                      +|.++    ..++..+..             |+.   + +.++.. +..+|+.|.|||+++-    .|.. ++++|.+|+
T Consensus       116 ~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~  195 (515)
T PLN02825        116 HGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVAT  195 (515)
T ss_pred             cCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHH
Confidence            89887    444433321             111   0 113444 4468999999999983    4444 499999999


Q ss_pred             HHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---C------------------------C------
Q 027731          118 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D------------------------L------  164 (219)
Q Consensus       118 ~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g------------------------~------  164 (219)
                      .+|.+|+|++|||+||++ +++.      +++++++++.+|+.++   +                        .      
T Consensus       196 avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (515)
T PLN02825        196 ACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDSVNTT  268 (515)
T ss_pred             HHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHhhhhcchhhhhhhhhcccccccccccccccccc
Confidence            999999999999999977 5543      2578888888765432   0                        0      


Q ss_pred             --------------------------C-------------------C-----chHHHHHHHHhCCCc-EEEEecCCCchH
Q 027731          165 --------------------------S-------------------V-----MDMTAITLCQENNIP-VVVFNLNQPGNI  193 (219)
Q Consensus       165 --------------------------~-------------------~-----~k~~aa~~a~~~gi~-v~I~~g~~~~~i  193 (219)
                                                .                   .     .++.+|..|++.||+ +|++++...+.|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gal  348 (515)
T PLN02825        269 PFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVL  348 (515)
T ss_pred             ccccccccccccccccccccccccccCcccccccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchH
Confidence                                      0                   0     037788999999997 999999999988


Q ss_pred             H-HHhcCCCCceEEecCC
Q 027731          194 A-KAIQGERVGTLIGGTW  210 (219)
Q Consensus       194 ~-~~l~g~~~GT~i~~~~  210 (219)
                      + ++|+.+++||+|..+.
T Consensus       349 l~elft~dg~gt~i~~~~  366 (515)
T PLN02825        349 LLELFTRDGMGTMIASDM  366 (515)
T ss_pred             HHHhhccCCceeEeccCh
Confidence            5 8999999999998753

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=99.84  E-value=9.7e-21  Score=160.51  Aligned_cols=164  Identities=23%  Similarity=0.286  Sum_probs=132.2

Q ss_pred             CCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc-----ccch--H--HHHHHHHH----H-hCCCEEEEeC
Q 027731           38 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-----VAEP--Y--IRRRAVRH----L-EKGRVVIFAA  103 (219)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~-----~~~~--~--~~~~~~~~----l-~~g~ipIv~g  103 (219)
                      ++.++.|.+...++.++.++++++|+..|.++...+......     +.+.  +  .-....++    + ..+.+||+.|
T Consensus       187 lt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTG  266 (559)
T KOG0456|consen  187 LTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTG  266 (559)
T ss_pred             cchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEee
Confidence            344556666667788999999999999999998766554432     2211  1  00111122    2 3467999999


Q ss_pred             CCC----------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHH
Q 027731          104 GTG----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMT  170 (219)
Q Consensus       104 ~~g----------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~  170 (219)
                      |.|          ..++.+|.+|+.+|.+|++|++-+|+|||||+++||+++|.|++++.++++|+.++   |..++||.
T Consensus       267 f~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~  346 (559)
T KOG0456|consen  267 FLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPF  346 (559)
T ss_pred             ccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhcccc
Confidence            854          24688999999999999999999999999999999999999999999999998885   88899999


Q ss_pred             HHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          171 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       171 aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      +.+++.+..||++|.|..+|.         ..||.|+++.
T Consensus       347 sM~~~~~~~IPvRvKN~~NP~---------~~GTvI~~d~  377 (559)
T KOG0456|consen  347 SMRPAREGRIPVRVKNSYNPT---------APGTVITPDR  377 (559)
T ss_pred             ccchhhccCcceEeecCCCCC---------CCceEeccch
Confidence            999999999999999998886         6799999873

>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]

Probab=99.74  E-value=3.7e-16  Score=128.30  Aligned_cols=199  Identities=26%  Similarity=0.351  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHCCCeEEEEECCch-HHHhHH---Hhcc-CCCCcChHHHHHH-----HHHHHHHHHHHHHHHhcCCC--ee
Q 027731            3 IAREVASVTRLGIEVAIVVGGGN-IFRGAS---AAGN-SGLDRSSADYIGM-----LATVMNAIFLQATMESIGIP--TR   70 (219)
Q Consensus         3 la~~i~~l~~~g~~vviV~GgG~-~~~~~~---~~~~-~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~gi~--a~   70 (219)
                      -+++|+.+.++||++||.||-|+ ++....   .+.. .+.+..+++...+     .+-++... +...|..+|++  +.
T Consensus        31 ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~AmsQG~IGy~l~qa-l~n~l~~~~~~~~v~  109 (312)
T COG0549          31 TAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLVAMSQGMIGYMLQQA-LRNELPRRGLEKPVV  109 (312)
T ss_pred             HHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHhHhhhhHHHHHHHHH-HHHHHhhcCCCCcee
Confidence            47889999999999999999898 432211   1111 2234445565443     22233333 34567777853  11


Q ss_pred             -E--eccccccc--ccc------------------------------h-H------------HH-HHHHHHHhCCCEEEE
Q 027731           71 -V--QTAFRMSE--VAE------------------------------P-Y------------IR-RRAVRHLEKGRVVIF  101 (219)
Q Consensus        71 -~--~~~~~~~~--~~~------------------------------~-~------------~~-~~~~~~l~~g~ipIv  101 (219)
                       .  +...+..|  |.+                              + |            +. +.+..++++|.++|.
T Consensus       110 tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~  189 (312)
T COG0549         110 TVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYRRVVPSPKPVRIVEAEAIKALLESGHVVIA  189 (312)
T ss_pred             EEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCeeEecCCCCCccchhHHHHHHHHhCCCEEEE
Confidence             1  22222111  000                              0 0            11 224468899999998


Q ss_pred             eCCCCC-------------CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC------
Q 027731          102 AAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------  162 (219)
Q Consensus       102 ~g~~g~-------------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------  162 (219)
                      .|..|.             ..+|-|..++.||..++||.|+|+||||+||-.-.  -|+.+.+++++.+|++++      
T Consensus       190 ~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~g--kp~q~~L~~v~~~e~~~yl~eg~F  267 (312)
T COG0549         190 AGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFG--KPNQQALDRVTVDEMEKYLAEGQF  267 (312)
T ss_pred             eCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCC--CccchhhcccCHHHHHHHHhcCCC
Confidence            875332             24899999999999999999999999999998753  356789999999996642      


Q ss_pred             --CCCCchHHHHHHH-HhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          163 --DLSVMDMTAITLC-QENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       163 --g~~~~k~~aa~~a-~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                        |.|.+|++||..- .+.|-+++|.+   .+.+.+++.|+ .||.|.+
T Consensus       268 a~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~  312 (312)
T COG0549         268 AAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP  312 (312)
T ss_pred             CCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence              7888899998644 44466788876   56778889986 6999864

>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]

Probab=98.30  E-value=5.1e-06  Score=73.70  Aligned_cols=140  Identities=15%  Similarity=0.222  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-----CCCCcChHHHHHHHHH----HHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDRSSADYIGMLAT----VMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~l~~~~l~~~gi~a~~   71 (219)
                      .++..++-|+..|.++|||||.|. +.+.+...+.     -+++.+..+.++..-+    ..|..++ ..|++.|-.+++
T Consensus       113 sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv-~nL~~~g~~ar~  191 (520)
T KOG2436|consen  113 SLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLV-INLSQLGTRARP  191 (520)
T ss_pred             HHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHhhhcchhhhhhHHH-HHHHHhhceecc
Confidence            467888899999999999999998 4443333332     1334444444443222    2333344 478888888776


Q ss_pred             ecccccc--ccc-c--------hH--------HH-HHHHHHHhCCCEEEEeCC----CCCC-ccChHHHHHHHHHhcCCc
Q 027731           72 QTAFRMS--EVA-E--------PY--------IR-RRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAE  126 (219)
Q Consensus        72 ~~~~~~~--~~~-~--------~~--------~~-~~~~~~l~~g~ipIv~g~----~g~~-~~~sD~~Aa~lA~~l~Ad  126 (219)
                      .+....-  .+. +        .|        ++ +++.++++.|.+|++..-    .|.. .++.|.+|..+|..|+|+
T Consensus       192 ~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~~L~~~  271 (520)
T KOG2436|consen  192 SSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELALALGPD  271 (520)
T ss_pred             ccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHhccCcc
Confidence            4432111  010 0        01        12 446678899999997752    3433 489999999999999999


Q ss_pred             eEEeeeccCccccCCC
Q 027731          127 VVLKATNVDGVYDDNP  142 (219)
Q Consensus       127 ~liiltDV~Gv~~~dP  142 (219)
                      ++++++|+.=+...+|
T Consensus       272 kli~l~d~g~~l~e~g  287 (520)
T KOG2436|consen  272 KLILLMDKGRILKENG  287 (520)
T ss_pred             eeEEecccccccccCc
Confidence            9999999833444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
3nwy_A	281	Structure And Allosteric Regulation Of The Uridine		4e-62
3ek5_A	243	Unique Gtp-Binding Pocket And Allostery Of Ump Kina		2e-60
1z9d_A	252	Crystal Structure Of A Putative Uridylate Kinase (U		5e-56
4a7w_A	240	Crystal Structure Of Uridylate Kinase From Helicoba		5e-53
2a1f_A	247	Crystal Structure Of Uridylate Kinase Length = 247		3e-51
1ybd_A	239	Crystal Structure Analysis Of Uridylate Kinase From		5e-51
2bnd_A	241	The Structure Of E.Coli Ump Kinase In Complex With		1e-50
2bne_A	241	The Structure Of E. Coli Ump Kinase In Complex With		1e-50
2bnf_A	241	The Structure Of E. Coli Ump Kinase In Complex With		5e-46
2jjx_A	255	The Crystal Structure Of Ump Kinase From Bacillus A		2e-45
2va1_A	256	Crystal Structure Of Ump Kinase From Ureaplasma Par		1e-39
2ij9_A	219	Crystal Structure Of Uridylate Kinase From Archaeog		2e-16
2brx_A	244	Ump Kinase From Pyrococcus Furiosus Without Ligands		9e-12
2ji5_A	227	Structure Of Ump Kinase From Pyrococcus Furiosus Co		1e-11
2j4j_A	226	Crystal Structure Of Uridylate Kinase From Sulfolob		1e-09
2bri_A	225	Ump Kinase From Pyrococcus Furiosus Complexed With		2e-07
2bmu_A	226	Ump Kinase From Pyrococcus Furiosus Complexed With		2e-07
3ll9_A	269	X-Ray Structures Of Isopentenyl Phosphate Kinase Le		3e-07
4f6t_B	268	The Crystal Structure Of The Molybdenum Storage Pro		2e-06
2ogx_B	270	The Crystal Structure Of The Molybdenum Storage Pro		5e-06
3c1n_C	473	Crystal Structure Of Allosteric Inhibition Threonin		1e-04
2hmf_A	469	Structure Of A Threonine Sensitive Aspartokinase Fr		2e-04

>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine Monophosphate Kinase From Mycobacterium Tuberculosis Length = 281

Iteration: 1
 Score =  234 bits (596), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 112/204 (54%), Positives = 152/204 (74%), Gaps = 1/204 (0%)
Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           +AR++A V R G+++A+V+GGGN FRGA      G++R+ +DY+GML TVMN++ LQ  +
Sbjct: 77  VARQIADVVRGGVQIAVVIGGGNFFRGAQLQ-QLGMERTRSDYMGMLGTVMNSLALQDFL 135
Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
           E  GI TRVQTA  M +VAEPY+  RAVRHLEKGRVVIF AG G P+F+TDT AA R  E
Sbjct: 136 EKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALE 195
Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I A+VVL A  VDGV+ ++PR NP A LL  ++++EV  + L V D TA +LC +N +P+
Sbjct: 196 IGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPI 255
Query: 183 VVFNLNQPGNIAKAIQGERVGTLI 206
           +VFNL   GNIA+A++GE++GTL+
Sbjct: 256 LVFNLLTDGNIARAVRGEKIGTLV 279

>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243

Iteration: 1
 Score =  228 bits (582), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 104/206 (50%), Positives = 153/206 (74%), Gaps = 1/206 (0%)
Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           +A EV    + G +VA+V+GGGNIFRGA  A  SG+DR + D++GMLATV+NA+ +Q  +
Sbjct: 37  LAHEVIEAQQAGAQVALVIGGGNIFRGAGLAA-SGMDRVTGDHMGMLATVINALAMQDAL 95
Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
           E +G   RV +A ++++V E +IRRRA+RHLEKGR+ IFAAGTGNPFFTTD+ AALR  E
Sbjct: 96  EKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIE 155
Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I A+++LKAT VDGVYD +P+++ +A   D+LTY EV  + L VMD  A  L +++++P+
Sbjct: 156 IGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPL 215
Query: 183 VVFNLNQPGNIAKAIQGERVGTLIGG 208
            +F +++PG + + + G ++GTL+ G
Sbjct: 216 RIFGMSEPGVLLRILHGAQIGTLVQG 241

>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase (Ump-Kinase) From Streptococcus Pyogenes Length = 252

Iteration: 1
 Score =  213 bits (543), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 105/207 (50%), Positives = 145/207 (70%), Gaps = 2/207 (0%)
Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
            AIA+E+A V   G+++A+V+GGGN++RG  AA ++G DR  ADY G L TV NA+    
Sbjct: 33  QAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAA-DAGXDRVQADYTGXLGTVXNALVXAD 91
Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           +++  G+ TRVQTA     VAEPYIR RA+RHLEK R+V+F AG G+P+F+TDT AALR 
Sbjct: 92  SLQHYGVDTRVQTAIPXQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRA 151
Query: 121 AEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENN 179
           AEI A+ +L A N VDGVY+ +P+++ NA   D LT+ EV  + L + D TA TL  +N+
Sbjct: 152 AEIEADAILXAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIXDATASTLSXDND 211
Query: 180 IPVVVFNLNQPGNIAKAIQGERVGTLI 206
           I +VVFN N+ GNI + + GE +GT +
Sbjct: 212 IDLVVFNXNEAGNIQRVVFGEHIGTTV 238

>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter Pylori Length = 240

Iteration: 1
 Score =  203 bits (517), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 106/199 (53%), Positives = 148/199 (74%)
Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           IA+E+ S+    IEV IV+GGGNI RG SAA    + R+S DY+GMLATV+NA+ +Q  +
Sbjct: 35  IAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEAL 94
Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
           E IG+ TRVQ+A  + E+ E YI R+A+RHLEKGRVVIF AGTGNPFFTTDTAA LR  E
Sbjct: 95  EHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIE 154
Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I +++++KAT VDG+YD +P +  +A+ LDTL+Y +    D+ VMD TAI+L ++N +P+
Sbjct: 155 IGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPI 214
Query: 183 VVFNLNQPGNIAKAIQGER 201
           VV N+ + GN+ + I+ ++
Sbjct: 215 VVCNMFKKGNLLQVIKHQQ 233

>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase Length = 247

Iteration: 1
 Score =  197 bits (502), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/204 (45%), Positives = 144/204 (70%), Gaps = 1/204 (0%)
Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           +A E+  +  +G+EV++V+GGGN+FRGA  A  +G++R   D++GMLATVMN + ++ ++
Sbjct: 36  MAVEIKELVEMGVEVSVVLGGGNLFRGAKLA-KAGMNRVVGDHMGMLATVMNGLAMRDSL 94
Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
               +  ++ +AF+++ + + Y    A++ L + RVVIF+AGTGNPFFTTD+ A LR  E
Sbjct: 95  FRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIE 154
Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I A+VVLKAT VDGVYD +P +NP+A+L   L+Y EV  K+L VMD++A TL +++ +P+
Sbjct: 155 IEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPI 214
Query: 183 VVFNLNQPGNIAKAIQGERVGTLI 206
            VFN+ +PG + + + G   GT I
Sbjct: 215 RVFNMGKPGALRQVVTGTEEGTTI 238

>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From Neisseria Meningitidis Length = 239

Iteration: 1
 Score =  197 bits (500), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 96/182 (52%), Positives = 130/182 (71%), Gaps = 1/182 (0%)
Query: 25  NIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY 84
           NIFRG SA   S  DR++ADY G  ATV NA+ L+   E++GI  RVQ+A    ++AE Y
Sbjct: 57  NIFRGVSAQAGS-XDRATADYXGXXATVXNALALKDAFETLGIKARVQSALSXQQIAETY 115
Query: 85  IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRR 144
            R +A+++LE+G+VVIFAAGTGNPFFTTDTAAALR AE N +V LKATNVDGVY  +P++
Sbjct: 116 ARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEXNCDVXLKATNVDGVYTADPKK 175
Query: 145 NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 204
           +P+A   +T+T+ E   K+L V D TA  LC+E  + +VVF + + G++ + I GE  GT
Sbjct: 176 DPSATRYETITFDEALLKNLKVXDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGT 235
Query: 205 LI 206
           L+
Sbjct: 236 LV 237

>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp Length = 241

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 139/204 (68%), Gaps = 1/204 (0%)
Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           +A+E+  +  LGI+V +V+GGGN+FRGA  A  +G++R   D++GMLATVMN + ++  +
Sbjct: 37  MAQEIKELVELGIQVGVVIGGGNLFRGAGLA-KAGMNRVVGDHMGMLATVMNGLAMRDAL 95
Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
               +  R+ +A  ++ V + Y    A+  L   RVVI +AGTGNPFFTTD+AA LR  E
Sbjct: 96  HRAYVNARLMSAIPLNAVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIE 155
Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I A VVLKAT VDGV+  +P ++P A + + LTY EV  K+L VMD+ A TL +++ +P+
Sbjct: 156 IEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPI 215
Query: 183 VVFNLNQPGNIAKAIQGERVGTLI 206
            VFN+N+PG + + + GE+ GTLI
Sbjct: 216 RVFNMNKPGALRRVVMGEKEGTLI 239

>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump Length = 241

Iteration: 1
 Score =  196 bits (497), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/204 (46%), Positives = 139/204 (68%), Gaps = 1/204 (0%)
Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           +A+E+  +  LGI+V +V+GGGN+FRGA  A  +G++R   D++GMLATVMN + ++  +
Sbjct: 37  MAQEIKELVELGIQVGVVIGGGNLFRGAGLA-KAGMNRVVGDHMGMLATVMNGLAMRDAL 95
Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
               +  R+ +A  ++ V + Y    A+  L   RVVI +AGTGNPFFTTD+AA LR  E
Sbjct: 96  HRAYVNARLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIE 155
Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 182
           I A VVLKAT VDGV+  +P ++P A + + LTY EV  K+L VMD+ A TL +++ +P+
Sbjct: 156 IEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPI 215
Query: 183 VVFNLNQPGNIAKAIQGERVGTLI 206
            VFN+N+PG + + + GE+ GTLI
Sbjct: 216 RVFNMNKPGALRRVVMGEKEGTLI 239

>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp Length = 241

Iteration: 1
 Score =  180 bits (457), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 130/203 (64%), Gaps = 1/203 (0%)
Query: 4   AREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATME 63
           A+E+  +  LGI+V +V+GGGN+FRGA  A  +G +R   D+ G LATV N +  +  + 
Sbjct: 38  AQEIKELVELGIQVGVVIGGGNLFRGAGLA-KAGXNRVVGDHXGXLATVXNGLAXRDALH 96
Query: 64  SIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI 123
              +  R+ +A  ++ V + Y    A+  L   RVVI +AGTGNPFFTTD+AA LR  EI
Sbjct: 97  RAYVNARLXSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEI 156
Query: 124 NAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVV 183
            A VVLKAT VDGV+  +P ++P A   + LTY EV  K+L V D+ A TL +++ +P+ 
Sbjct: 157 EANVVLKATKVDGVFTADPAKDPTATXYEQLTYSEVLEKELKVXDLAAFTLARDHKLPIR 216
Query: 184 VFNLNQPGNIAKAIQGERVGTLI 206
           VFN N+PG + + + GE+ GTLI
Sbjct: 217 VFNXNKPGALRRVVXGEKEGTLI 239

>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus Anthracis (Ba1797) Length = 255

Iteration: 1
 Score =  178 bits (452), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/206 (44%), Positives = 130/206 (63%), Gaps = 3/206 (1%)
Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           IA E+ S+  LGIEV+IV+GGGNIFRG   A   G+DR  AD IG L T++N++ L+  +
Sbjct: 40  IANEILSIVDLGIEVSIVIGGGNIFRG-HLAEEWGIDRVEADNIGTLGTIINSLMLRGVL 98
Query: 63  ES-IGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
            S      RV T+   + VAEPYIR RAV HL+ G +VIF  G G PF TTD  +  R  
Sbjct: 99  TSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAI 158
Query: 122 EINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           E+N++ +L A   VDGV+  +P+ N +A++   L Y +V  +++ VMD  A+ L ++ N+
Sbjct: 159 EMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNL 218
Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLI 206
           P  VFN ++PG + +   GE VGTLI
Sbjct: 219 PAHVFNFDEPGVMRRICLGEHVGTLI 244

>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum Length = 256

Iteration: 1
 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 133/205 (64%), Gaps = 3/205 (1%)
Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 62
           +A ++  +++  I V+IV+GGGNI+RG S A    +DR+ AD +GM+AT++N + L+  +
Sbjct: 52  LAEQIEKISKKYI-VSIVLGGGNIWRG-SIAKELDMDRNLADNMGMMATIINGLALENAL 109
Query: 63  ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 122
             + + T V +A +  ++          + +EK +V+IF AGTG P+FTTD+ AA+R AE
Sbjct: 110 NHLNVNTIVLSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAE 169
Query: 123 INAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIP 181
             + ++L   N VDGVYD +P+ NPNA+  + +T+    +++L VMD TA+ LCQENNI 
Sbjct: 170 TESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNIN 229
Query: 182 VVVFNLNQPGNIAKAIQGERVGTLI 206
           ++VFN+++P  I   ++ +   T++
Sbjct: 230 LLVFNIDKPNAIVDVLEKKNKYTIV 254

>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus Fulgidus Length = 219

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/204 (33%), Positives = 101/204 (49%), Gaps = 30/204 (14%)
Query: 16  EVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIG--IPTRVQ 72
           +V +VVGGG + R    +A   G   +  DYIG+ AT +NA+ L + + S    +P    
Sbjct: 34  QVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFM 93
Query: 73  TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 132
            A  +S++                RVV+   G   P  TTD  AAL    I A+V + AT
Sbjct: 94  EAEELSKLY---------------RVVVM--GGTFPGHTTDATAALLAEFIKADVFINAT 136
Query: 133 NVDGVYDDNPRRNPNARLLDTLTYQ---EVTSKDLS------VMDMTAITLCQENNIPVV 183
           NVDGVY  +P+ + +A   D L+ Q   E+ S+  +      V+D+ A  + + + I   
Sbjct: 137 NVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTY 196
Query: 184 VFNLNQPGNIAKAIQGERVGTLIG 207
           V  L  P NI KA++GE VGT+I 
Sbjct: 197 VI-LGTPENIMKAVKGEAVGTVIA 219

>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands Length = 244

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 24/201 (11%)
Query: 16  EVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 74
           EVA+VVGGG + R     A       +  D+IG+  T  NA+ L A +     P      
Sbjct: 56  EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPV----- 110
Query: 75  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 134
                V E +        L+K    I   G  +P  TTD  AAL    + A++++  TNV
Sbjct: 111 -----VVEDFWEAWKAVQLKK----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNV 161
Query: 135 DGVYDDNPRRNPNARLLDTLTYQ---EVTSKDL------SVMDMTAITLCQENNIPVVVF 185
           DGVY  +P+++P A+ +  +  +   E+  K +      SV+D  A  +   + I  +V 
Sbjct: 162 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 221
Query: 186 NLNQPGNIAKAIQGERVGTLI 206
                 ++ + I+G+  GT I
Sbjct: 222 GKEDAKDLFRVIKGDHNGTTI 242

>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed With Utp Length = 227

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 16  EVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 74
           EVA+VVGGG + R     A       +  D+IG+  T  NA+ L A +     P      
Sbjct: 39  EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPV----- 93
Query: 75  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 134
                V E +        L+K    I   G  +P  TTD  AAL    + A++++  TNV
Sbjct: 94  -----VVEDFWEAWKAVQLKK----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNV 144
Query: 135 DGVYDDNPRRNPNARLLDTLTYQ---EVTSKDL------SVMDMTAITLCQENNIPVVVF 185
           DGVY  +P+++P A+ +  +  +   E+  K +      SV+D  A  +     I  +V 
Sbjct: 145 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARTGIKTIVI 204
Query: 186 NLNQPGNIAKAIQGERVGTLI 206
                 ++ + I+G+  GT I
Sbjct: 205 GKEDAKDLFRVIKGDHNGTTI 225

>pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus Solfataricus In Complex With Ump And Amppcp To 2.1 Angstrom Resolution Length = 226

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 96/204 (47%), Gaps = 25/204 (12%)
Query: 14  GIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQ 72
           G  V IV GGG+  R     A   G+  +  D +G+ A+ +NA  +  +++ +       
Sbjct: 34  GFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLA------ 87
Query: 73  TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 132
               + +  E +I+  +      G+VV+   G   P  +T   AAL     +++ ++ AT
Sbjct: 88  -YMHVPQSLEEFIQDWS-----HGKVVV--TGGFQPGQSTAAVAALVAEASSSKTLVVAT 139
Query: 133 NVDGVYDDNPRRNPNARLLDTLTYQE----------VTSKDLSVMDMTAITLCQENNIPV 182
           NVDGVY+ +PR   + +L+  LT Q+          V +    ++D  AI + + + I V
Sbjct: 140 NVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRV 199
Query: 183 VVFNLNQPGNIAKAIQGERVGTLI 206
           +V N  +   I   ++GE V ++I
Sbjct: 200 IVMNYRKLNRIIDILKGEEVSSII 223

>pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its Substrate Analog Amppnp Length = 225

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 16  EVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 74
           EVA+VVGGG + R     A       +  D+IG+  T  NA  L A +     P  V+  
Sbjct: 37  EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAXLLIAALREKAYPVVVEDF 96
Query: 75  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 134
           +            +AV+ L+K    I   G  +P  TTD  AAL    + A++++  TNV
Sbjct: 97  WEA---------WKAVQ-LKK----IPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNV 142
Query: 135 DGVYDDNPRRNPNARLLDTLTYQ---EVTSKDL------SVMDMTAITLCQENNIPVVVF 185
           DGVY  +P+++P A+ +     +   E+  K +      SV+D  A  +   + I  +V 
Sbjct: 143 DGVYTADPKKDPTAKKIKKXKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 202
Query: 186 NLNQPGNIAKAIQGERVGTLI 206
                 ++ + I+G+  GT I
Sbjct: 203 GKEDAKDLFRVIKGDHNGTTI 223

>pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its Substrate Ump And Its Substrate Analog Amppnp Length = 226

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 92/201 (45%), Gaps = 24/201 (11%)
Query: 16  EVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 74
           EVA+VVGGG + R     A       +  D+IG+  T  NA  L A +     P  V+  
Sbjct: 38  EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAXLLIAALREKAYPVVVEDF 97
Query: 75  FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 134
           +            +AV+ L+K    I   G  +P  TTD  AAL    + A++++  TNV
Sbjct: 98  WEA---------WKAVQ-LKK----IPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNV 143
Query: 135 DGVYDDNPRRNPNARLLDTLTYQ---EVTSKDL------SVMDMTAITLCQENNIPVVVF 185
           DGVY  +P+++P A+ +     +   E+  K +      SV+D  A  +   + I  +V 
Sbjct: 144 DGVYTADPKKDPTAKKIKKXKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 203
Query: 186 NLNQPGNIAKAIQGERVGTLI 206
                 ++ + I+G+  GT I
Sbjct: 204 GKEDAKDLFRVIKGDHNGTTI 224

>pdb|3LL9|A Chain A, X-Ray Structures Of Isopentenyl Phosphate Kinase Length = 269

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 123 INAEVVLKATNVDGVYDDNPRRNPNARLLDTL-TYQEVTSKDLSV-MDMTA--------I 172
           +  E V+  T+VDGVY  NP+++P+ARLLD + +  ++ S D ++  D+T         +
Sbjct: 171 LXPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGXVGKIREL 230
Query: 173 TLCQENNIPVVVFNLNQPGNIAKAIQGERV-GTLIGG 208
            L  E  +   + N   PGNI +A+ GE V GT I G
Sbjct: 231 LLLAEKGVESEIINAAVPGNIERALLGEEVRGTRITG 267

>pdb|4F6T|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein (Mosto) From Azotobacter Vinelandii Loaded With Various Polyoxometalates Length = 268

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 108 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--S 165
           P + TD    L   +   + ++   + DG+Y  NP+ + +A  +  ++  E+ +K L  S
Sbjct: 163 PPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDS 222
Query: 166 VMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
           +++   + L Q  ++   V V N   PGN+ +A+ GE VGT+I
Sbjct: 223 ILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTII 265

>pdb|2OGX|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein From Azotobacter Vinelandii Loaded With Polyoxotungstates (Wsto) Length = 270

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 108 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--S 165
           P + TD    L   +   +  +   + DG+Y  NP+ + +A  +  ++  E  +K L  S
Sbjct: 165 PPYRTDAGCFLLAEQFGCKQXIFVKDEDGLYTANPKTSKDATFIPRISVDEXKAKGLHDS 224
Query: 166 VMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
           +++   + L Q  ++   V V N   PGN+ +A+ GE VGT+I
Sbjct: 225 ILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTII 267

>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 75  FRMSEVAEPYIRRRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINA 125
           F  + V    ++ R +  L++G + +   F   T   + TT      D +AAL    ++A
Sbjct: 164 FGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDA 223
Query: 126 EVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMDMTAITLCQENNIPV 182
           +++   T+V GVY  +PR  P AR +  L+Y    E+      V+    I    E  IP+
Sbjct: 224 DIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPI 283
Query: 183 VVFNLNQPGNIAKAIQGERVGTLI 206
           +V N  +P         E  GTLI
Sbjct: 284 LVKNTFEP---------ESEGTLI 298

>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 75  FRMSEVAEPYIRRRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINA 125
           F  + V    ++ R +  L++G + +   F   T   + TT      D +AAL    ++A
Sbjct: 163 FGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDA 222
Query: 126 EVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMDMTAITLCQENNIPV 182
           +++   T+V GVY  +PR  P AR +  L+Y    E+      V+    I    E  IP+
Sbjct: 223 DIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPI 282
Query: 183 VVFNLNQPGNIAKAIQGERVGTLI 206
           +V N  +P         E  GTLI
Sbjct: 283 LVKNTFEP---------ESEGTLI 297

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	9e-94
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	4e-92
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	9e-92
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	1e-91
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	4e-90
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	3e-89
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	4e-89
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	6e-88
3nwy_A	281	Uridylate kinase; allosterically activated form, A	7e-88
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	1e-87
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	2e-86
2ij9_A	219	Uridylate kinase; structural genomics, protein str	6e-85
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	1e-68
3k4o_A	266	Isopentenyl phosphate kinase; small molecule kinas	1e-42
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	3e-16
3d40_A	286	FOMA protein; fosfomycin, antibiotic resistance, k	2e-15
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	1e-14
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	3e-12
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	5e-11
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	2e-10
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	5e-10
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	3e-09
2ako_A	251	Glutamate 5-kinase; structural genomics, PSI, prot	4e-08
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	8e-07
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	2e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-05
1e19_A	314	Carbamate kinase-like carbamoylphosphate synthetas	1e-04
3d2m_A	456	Putative acetylglutamate synthase; protein-COA-Glu	5e-04
2we5_A	310	Carbamate kinase 1; arginine catabolism, arginine	8e-04

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270

 Score =  274 bits (702), Expect = 9e-94
 Identities = 46/213 (21%), Positives = 87/213 (40%), Gaps = 7/213 (3%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQAT 61
           +  E+ +  R   ++ I  G G   R   +     GL       +G      NA  L   
Sbjct: 59  LVDEIVAA-RKNHKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNAAMLGQL 117

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGN-PFFTTDTAAALRC 120
           +   GIP           ++   +       +   ++ +  A  G  P + TD    L  
Sbjct: 118 LAKHGIPVVGGAGLSAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLA 177

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--SVMDMTAITLCQ-- 176
            +   + ++   + DG+Y  NP+ + +A  +  ++  E+ +K L  S+++   + L Q  
Sbjct: 178 EQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSA 237

Query: 177 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 209
           ++   V V N   PGN+ +A+ GE VGT+I  +
Sbjct: 238 QHVREVQVVNGLVPGNLTRALAGEHVGTIITAS 270

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240

 Score =  269 bits (688), Expect = 4e-92
 Identities = 107/207 (51%), Positives = 152/207 (73%), Gaps = 1/207 (0%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
             IA+E+ S+    IEV IV+GGGNI RG SAA    + R+S DY+GMLATV+NA+ +Q 
Sbjct: 33  DHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQE 92

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
            +E IG+ TRVQ+A  + E+ E YI R+A+RHLEKGRVVIF AGTGNPFFTTDTAA LR 
Sbjct: 93  ALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRA 152

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
            EI +++++KAT VDG+YD +P +  +A+ LDTL+Y +    D+ VMD TAI+L ++N +
Sbjct: 153 IEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKL 212

Query: 181 PVVVFNLNQPGNIAKAIQGER-VGTLI 206
           P+VV N+ + GN+ + I+ ++ V +++
Sbjct: 213 PIVVCNMFKKGNLLQVIKHQQGVFSMV 239

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247

 Score =  268 bits (686), Expect = 9e-92
 Identities = 92/207 (44%), Positives = 144/207 (69%), Gaps = 1/207 (0%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
             +A E+  +  +G+EV++V+GGGN+FRGA  A  +G++R   D++GMLATVMN + ++ 
Sbjct: 34  DRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLA-KAGMNRVVGDHMGMLATVMNGLAMRD 92

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           ++    +  ++ +AF+++ + + Y    A++ L + RVVIF+AGTGNPFFTTD+ A LR 
Sbjct: 93  SLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRG 152

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
            EI A+VVLKAT VDGVYD +P +NP+A+L   L+Y EV  K+L VMD++A TL +++ +
Sbjct: 153 IEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGM 212

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIG 207
           P+ VFN+ +PG + + + G   GT I 
Sbjct: 213 PIRVFNMGKPGALRQVVTGTEEGTTIC 239

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243

 Score =  267 bits (685), Expect = 1e-91
 Identities = 104/208 (50%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
             +A EV    + G +VA+V+GGGNIFRGA  A  SG+DR + D++GMLATV+NA+ +Q 
Sbjct: 35  NRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAA-SGMDRVTGDHMGMLATVINALAMQD 93

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
            +E +G   RV +A ++++V E +IRRRA+RHLEKGR+ IFAAGTGNPFFTTD+ AALR 
Sbjct: 94  ALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRA 153

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
            EI A+++LKAT VDGVYD +P+++ +A   D+LTY EV  + L VMD  A  L +++++
Sbjct: 154 IEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDL 213

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGG 208
           P+ +F +++PG + + + G ++GTL+ G
Sbjct: 214 PLRIFGMSEPGVLLRILHGAQIGTLVQG 241

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226

 Score =  263 bits (674), Expect = 4e-90
 Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 25/216 (11%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
            + + +  +   G  V IV GGG+  R     A   G+  +  D +G+ A+ +NA  +  
Sbjct: 22  VLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMF 81

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           +++ +                 P      ++    G+VV+   G   P  +T   AAL  
Sbjct: 82  SLQDLAYMHV------------PQSLEEFIQDWSHGKVVV--TGGFQPGQSTAAVAALVA 127

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE----------VTSKDLSVMDMT 170
              +++ ++ ATNVDGVY+ +PR   + +L+  LT Q+          V +    ++D  
Sbjct: 128 EASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPL 187

Query: 171 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
           AI + + + I V+V N  +   I   ++GE V ++I
Sbjct: 188 AIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSII 223

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244

 Score =  261 bits (670), Expect = 3e-89
 Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 25/214 (11%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
           IA ++  V+    EVA+VVGGG + R     A       +  D+IG+  T  NA+ L A 
Sbjct: 44  IAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAA 102

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
           +     P           V E +        L+K    I   G  +P  TTD  AAL   
Sbjct: 103 LREKAYPV----------VVEDFWEAWKAVQLKK----IPVMGGTHPGHTTDAVAALLAE 148

Query: 122 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV---------TSKDLSVMDMTAI 172
            + A++++  TNVDGVY  +P+++P A+ +  +  +E+          +   SV+D  A 
Sbjct: 149 FLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAA 208

Query: 173 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
            +   + I  +V       ++ + I+G+  GT I
Sbjct: 209 KIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 242

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239

 Score =  261 bits (668), Expect = 4e-89
 Identities = 110/206 (53%), Positives = 155/206 (75%), Gaps = 1/206 (0%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
           +    E+A V ++G++V IVVGGGNIFRG SA     +DR++ADY+GM+ATVMNA+ L+ 
Sbjct: 33  VQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQ-AGSMDRATADYMGMMATVMNALALKD 91

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
             E++GI  RVQ+A  M ++AE Y R +A+++LE+G+VVIFAAGTGNPFFTTDTAAALR 
Sbjct: 92  AFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRG 151

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           AE+N +V+LKATNVDGVY  +P+++P+A   +T+T+ E   K+L VMD TA  LC+E  +
Sbjct: 152 AEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKL 211

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLI 206
            +VVF + + G++ + I GE  GTL+
Sbjct: 212 NIVVFGIAKEGSLKRVITGEDEGTLV 237

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252

 Score =  259 bits (662), Expect = 6e-88
 Identities = 109/209 (52%), Positives = 152/209 (72%), Gaps = 2/209 (0%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
            AIA+E+A V   G+++A+V+GGGN++RG  AA ++G+DR  ADY GML TVMNA+ +  
Sbjct: 33  QAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAA-DAGMDRVQADYTGMLGTVMNALVMAD 91

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
           +++  G+ TRVQTA  M  VAEPYIR RA+RHLEK R+V+F AG G+P+F+TDT AALR 
Sbjct: 92  SLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRA 151

Query: 121 AEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENN 179
           AEI A+ +L A N VDGVY+ +P+++ NA   D LT+ EV  + L +MD TA TL  +N+
Sbjct: 152 AEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDND 211

Query: 180 IPVVVFNLNQPGNIAKAIQGERVGTLIGG 208
           I +VVFN+N+ GNI + + GE +GT +  
Sbjct: 212 IDLVVFNMNEAGNIQRVVFGEHIGTTVSN 240

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281

 Score =  259 bits (664), Expect = 7e-88
 Identities = 112/206 (54%), Positives = 152/206 (73%), Gaps = 1/206 (0%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
             +AR++A V R G+++A+V+GGGN FRGA      G++R+ +DY+GML TVMN++ LQ 
Sbjct: 75  AQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQ-QLGMERTRSDYMGMLGTVMNSLALQD 133

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
            +E  GI TRVQTA  M +VAEPY+  RAVRHLEKGRVVIF AG G P+F+TDT AA R 
Sbjct: 134 FLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRA 193

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
            EI A+VVL A  VDGV+ ++PR NP A LL  ++++EV  + L V D TA +LC +N +
Sbjct: 194 LEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGM 253

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLI 206
           P++VFNL   GNIA+A++GE++GTL+
Sbjct: 254 PILVFNLLTDGNIARAVRGEKIGTLV 279

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256

 Score =  258 bits (660), Expect = 1e-87
 Identities = 78/207 (37%), Positives = 133/207 (64%), Gaps = 3/207 (1%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
             +A ++  +++  I V+IV+GGGNI+RG+ A     +DR+ AD +GM+AT++N + L+ 
Sbjct: 50  NDLAEQIEKISKKYI-VSIVLGGGNIWRGSIAK-ELDMDRNLADNMGMMATIINGLALEN 107

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
            +  + + T V +A +  ++          + +EK +V+IF AGTG P+FTTD+ AA+R 
Sbjct: 108 ALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRA 167

Query: 121 AEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENN 179
           AE  + ++L   N VDGVYD +P+ NPNA+  + +T+    +++L VMD TA+ LCQENN
Sbjct: 168 AETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENN 227

Query: 180 IPVVVFNLNQPGNIAKAIQGERVGTLI 206
           I ++VFN+++P  I   ++ +   T++
Sbjct: 228 INLLVFNIDKPNAIVDVLEKKNKYTIV 254

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255

 Score =  255 bits (652), Expect = 2e-86
 Identities = 91/208 (43%), Positives = 128/208 (61%), Gaps = 3/208 (1%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQ- 59
             IA E+ S+  LGIEV+IV+GGGNIFRG  A    G+DR  AD IG L T++N++ L+ 
Sbjct: 38  EHIANEILSIVDLGIEVSIVIGGGNIFRGHLAE-EWGIDRVEADNIGTLGTIINSLMLRG 96

Query: 60  ATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALR 119
                     RV T+   + VAEPYIR RAV HL+ G +VIF  G G PF TTD  +  R
Sbjct: 97  VLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQR 156

Query: 120 CAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQEN 178
             E+N++ +L A   VDGV+  +P+ N +A++   L Y +V  +++ VMD  A+ L ++ 
Sbjct: 157 AIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDY 216

Query: 179 NIPVVVFNLNQPGNIAKAIQGERVGTLI 206
           N+P  VFN ++PG + +   GE VGTLI
Sbjct: 217 NLPAHVFNFDEPGVMRRICLGEHVGTLI 244

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219

 Score =  249 bits (639), Expect = 6e-85
 Identities = 67/217 (30%), Positives = 99/217 (45%), Gaps = 27/217 (12%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQ 59
              A+ + SV +   +V +VVGGG + R    +A   G   +  DYIG+ AT +NA+ L 
Sbjct: 20  REFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLI 78

Query: 60  ATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALR 119
                        +A   +    P     A    +  RVV+   G   P  TTD  AAL 
Sbjct: 79  -------------SAIPSAAKKVPVDFMEAEELSKLYRVVVM--GGTFPGHTTDATAALL 123

Query: 120 CAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL---------SVMDMT 170
              I A+V + ATNVDGVY  +P+ + +A   D L+ Q++               V+D+ 
Sbjct: 124 AEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLL 183

Query: 171 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 207
           A  + + + I   V     P NI KA++GE VGT+I 
Sbjct: 184 AAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTVIA 219

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276

 Score =  210 bits (536), Expect = 1e-68
 Identities = 53/223 (23%), Positives = 81/223 (36%), Gaps = 33/223 (14%)

Query: 3   IAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQAT 61
           +  E+  +      + I+ G G   R   + G + GL   S   +       N   L A 
Sbjct: 61  LVEELRKLLP-EHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAM 119

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAA----------GTGNPFFT 111
           + S G+            V  P +  +   HL   R V+ +A          G+  P   
Sbjct: 120 LASEGVSY----------VEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHR 169

Query: 112 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRR--NPNARLLDTLTYQEVTSK------D 163
            DT A L      A  +    NVDG+Y  +P       AR L   +  ++         D
Sbjct: 170 ADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVD 229

Query: 164 LSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
            +++D+ A          V V N   PG +  A++GE VGTLI
Sbjct: 230 RALLDVMATARH---IERVQVVNGLVPGRLTAALRGEHVGTLI 269

>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266

 Score =  143 bits (362), Expect = 1e-42
 Identities = 49/235 (20%), Positives = 85/235 (36%), Gaps = 34/235 (14%)

Query: 1   MAIAREVASVTRL------GIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVM- 53
             IA E+ +           I++ +V GGG       A     ++     +I M      
Sbjct: 33  ERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPV-AKKYLKIEDGKKIFINMEKGFWE 91

Query: 54  --------NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAG- 104
                   N I +            +Q +  +    +      A++ + K  +V    G 
Sbjct: 92  IQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGD 151

Query: 105 ------TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE 158
                  G    + D        E+ A+++L AT+VDGV  DN       + +D     +
Sbjct: 152 IVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKP----IKRIDKNNIYK 207

Query: 159 VTS--KDLSVMDMTA-----ITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
           + +     + +D+T      I + ++N     VFN N+  NI KA+ GE  GT I
Sbjct: 208 ILNYLSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEI 262

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249

 Score = 74.2 bits (183), Expect = 3e-16
 Identities = 45/231 (19%), Positives = 79/231 (34%), Gaps = 35/231 (15%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGL----DRSSADYIGMLATVM---N 54
              R +  V     ++  VV GG  F G   A   GL    +  S+    ++   M   +
Sbjct: 27  YAIRSIVKVLSGIEDLVCVVHGGGSF-GHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLD 85

Query: 55  AIFLQATMESIGIPTRVQ---TAFRMSEVAEPYIRRRAVRHLEKGRVV-------IFAAG 104
            + + A M  +G+   +    +A R             +        V            
Sbjct: 86  LMVIDA-MIEMGMRP-ISVPISALRYDG----RFDYTPLIRYIDAGFVPVSYGDVYIKDE 139

Query: 105 TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL 164
                ++ D   A     +  +V +  T+VDG+Y  +P+RNP+A LL  +      + D 
Sbjct: 140 HSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID--TNITFDR 197

Query: 165 SVMDMT---------AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
              D+T          + +       V + N N P  I    +   +GT+I
Sbjct: 198 VQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGDIGKESFIGTVI 248

>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* Length = 286

 Score = 72.7 bits (178), Expect = 2e-15
 Identities = 35/236 (14%), Positives = 68/236 (28%), Gaps = 31/236 (13%)

Query: 2   AIAREVASVTRLGIEVAIVV-GGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAI---F 57
             AR  A +        +++ GGG    GA    +S    S A        V        
Sbjct: 51  RFARNFARLAETYRGRMVLISGGGAFGHGAIRDHDSTHAFSLAGLTEATFEVKKRWAEKL 110

Query: 58  LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAV-RHLEKGRV------VIFAAGTGNPFF 110
               +++  +      A        P +R   +   L+ G +       +F        F
Sbjct: 111 RGIGVDAFPLQL---AAMCTLRNGIPQLRSEVLRDVLDHGALPVLAGDALFDEHGKLWAF 167

Query: 111 TTDTAAALRCAEINAEV-VLKATNVDGVYDDNPRRNPNARLLDTLTYQEV--TSKDLSVM 167
           ++D    +    +   + V+  T+VDG+  D    +     +D  + ++        S  
Sbjct: 168 SSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAGGDTILPEVDARSPEQAYAALWGSSEW 227

Query: 168 DMT--------AITLCQENNIPVVVFNLNQPGNI------AKAIQGERVGTLIGGT 209
           D T        A+  C        +   +   ++        +       T I  T
Sbjct: 228 DATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT 283

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 11/107 (10%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM--- 169
           D         +  E V+  T+VDGVY  NP+++P+ARLLD +   +        ++    
Sbjct: 161 DQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVT 220

Query: 170 -------TAITLCQENNIPVVVFNLNQPGNIAKAIQGERV-GTLIGG 208
                    + L  E  +   + N   PGNI +A+ GE V GT I G
Sbjct: 221 GGMVGKIRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRITG 267

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 35/181 (19%), Positives = 67/181 (37%), Gaps = 26/181 (14%)

Query: 53  MNAIFLQATMESIGIPTRVQTAFRMS-EVAEPYIRRRAVRHLEKGRVVI---FAAGTGNP 108
           +N + L   + +  I       F  S    E     +    +      +   F   + N 
Sbjct: 119 LNGVILAKYLNAEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAVIPGFYGSSFNG 178

Query: 109 FFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK 162
              T      D   ++  A +NA++    T+V G    +PR   N + +  ++Y+E+   
Sbjct: 179 DVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELR-- 236

Query: 163 DLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 217
           +LS     V+   AI   +++ IP+ + N N+P            GTLI    +  ++  
Sbjct: 237 ELSYMGATVLHEEAIFPVKDSGIPINIKNTNKP---------SDPGTLILSDTHKEINLG 287

Query: 218 L 218
            
Sbjct: 288 T 288

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 47/186 (25%)

Query: 53  MNAIFLQATMESIGIPT---------RVQTAFRMSEVAEPYIRRRAVRHL---EKGRVVI 100
           M+ +     +    +           R    F  +E     +   A   L       +VI
Sbjct: 121 MSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVI 180

Query: 101 ---FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 151
              F         TT      D  AAL    ++A  V   T+V G+Y  +PR    A+ +
Sbjct: 181 TQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRI 240

Query: 152 DTLTYQEVTSKDLSVMDMT----------AITLCQENNIPVVVFNLNQPGNIAKAIQGER 201
           D + + E         +M            +     ++IPV V +   P           
Sbjct: 241 DEIAFAE-------AAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDP---------RA 284

Query: 202 VGTLIG 207
            GTL+ 
Sbjct: 285 GGTLVC 290

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Length = 367

 Score = 57.1 bits (139), Expect = 5e-10
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 22/111 (19%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM--- 169
           D  +AL      A+ +L  T+  G+Y  +PR NP A L+      +V   D ++  +   
Sbjct: 150 DNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIK-----DVYGIDDALRAIAGD 204

Query: 170 --------------TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
                          A  +     I  ++   ++PG I   ++G  VGTL 
Sbjct: 205 SVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLF 255

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 40/184 (21%)

Query: 53  MNAIFLQATMESIGIPTR----------VQTAFRMSEVAEPYIRRRAVRH----LEKGRV 98
           ++     A + +IG+  R              F   ++ E      A R     +    V
Sbjct: 150 LSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAV 209

Query: 99  VI----FAAGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA 148
            I       G      TT      D  A      +  + +    +VDGV   +P     A
Sbjct: 210 PIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRA 269

Query: 149 RLLDTLTYQEVTSKDLS-----VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVG 203
             +  LT+ E    +L+     V+   ++   +E  IPV V N   P         +  G
Sbjct: 270 TPVPYLTFDEAA--ELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNP---------KAPG 318

Query: 204 TLIG 207
           T+I 
Sbjct: 319 TIIT 322

>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Length = 251

 Score = 51.0 bits (123), Expect = 4e-08
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 24/112 (21%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDM--- 169
           D+ +A      +A++++  +++DG YD NP    +A+ L+     ++T      +     
Sbjct: 143 DSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLE-----KITHIKEEWLQATIK 197

Query: 170 --------------TAITLCQENNIPVVVFNLNQPGNIAKAIQ--GERVGTL 205
                          A     E+N  + + +          +    +  GTL
Sbjct: 198 TGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTL 249

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 19/110 (17%)

Query: 91  RHLEKGRVVIFA----AGTGNPFFTT------DTAAALRCAEINAEVVLKATNVDGVYDD 140
             L++G++ I A            TT      DT A    A +NA+V    ++VDGVY  
Sbjct: 123 EALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTA 182

Query: 141 NPRRNPNARLLDTLTYQE------VTSKDLSVMDMTAITLCQENNIPVVV 184
           +PR  PNA+ L+ L+++E      V SK   ++ + ++   +  N+P+ V
Sbjct: 183 DPRIVPNAQKLEKLSFEEMLELAAVGSK---ILVLRSVEYARAFNVPLRV 229

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 26/114 (22%)

Query: 91  RHLEKGRVVIFA-------AGTGNPFFTT------DT-AAALRCAEINAEVVLKATNVDG 136
            HL +G+VV+ A               TT      DT A AL  A + A+     T+V G
Sbjct: 123 HHLREGKVVVVAGFQGISSVEHLE--ITTLGRGGSDTSAVALAAA-LKADFCEIYTDVPG 179

Query: 137 VYDDNPRRNPNARLLDTLTYQE------VTSKDLSVMDMTAITLCQENNIPVVV 184
           +   +PR  P A+L+  +T  E      + +K   V+   A+ + +   IP+VV
Sbjct: 180 ILTTDPRLVPEAQLMAEITCDEMLELASLGAK---VLHPRAVEIARNYGIPLVV 230

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 13/41 (31%)

Query: 87  RRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEV 127
           ++A++ L+   + ++A          D+A AL  A I A +
Sbjct: 19  KQALKKLQ-ASLKLYA-----D----DSAPAL--A-IKATM 46

>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Length = 314

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 20/98 (20%)

Query: 80  VAEPYIRR----RAVRHLEKGRVVIFAAGTGNP--------------FFTTDTAAALRCA 121
           V  P  +       ++ L +  V++ A+G G                    D A      
Sbjct: 165 VPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAE 224

Query: 122 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 159
           E+NA++ +  T+V+G            + L  +  +E+
Sbjct: 225 EVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEEL 260

>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* Length = 456

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 43/169 (25%)

Query: 1   MAIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLAT-----VMNA 55
           +  A++ A   R   E A+        R   A     +        G   T     V++ 
Sbjct: 112 LGQAQQFAGTVRSRFEAALCGSVSGFAR---APSVPLVS-------GNFLTARPIGVIDG 161

Query: 56  IFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFA----AGTGNPF-F 110
             ++      G+  +  TA          +R      L+ G +V       +  G  F  
Sbjct: 162 TDMEYA----GVIRKTDTAA---------LR----FQLDAGNIVWMPPLGHSYGGKTFNL 204

Query: 111 TTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 159
               AAA     + AE ++  T  DG+         +  L +TL+ QE 
Sbjct: 205 DMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEA 247

>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* Length = 310

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 113 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 159
           D A+      ++A+ ++  T VD V  +     P+ + L  +T  E+
Sbjct: 210 DFASEKLAELVDADALVILTGVDYVCIN--YGKPDEKQLTNVTVAEL 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
3nwy_A	281	Uridylate kinase; allosterically activated form, A	100.0
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	100.0
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	100.0
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	100.0
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	100.0
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	100.0
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	100.0
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	100.0
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	100.0
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	100.0
2ij9_A	219	Uridylate kinase; structural genomics, protein str	100.0
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	100.0
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	100.0
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	100.0
2ako_A	251	Glutamate 5-kinase; structural genomics, PSI, prot	100.0
2ap9_A	299	NAG kinase, acetylglutamate kinase, AGK; structura	100.0
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	100.0
2rd5_A	298	Acetylglutamate kinase-like protein; protein-prote	100.0
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	100.0
2egx_A	269	Putative acetylglutamate kinase; struc genomics, N	100.0
2v5h_A	321	Acetylglutamate kinase; amino-acid biosynthesis, t	100.0
3k4o_A	266	Isopentenyl phosphate kinase; small molecule kinas	99.98
2bty_A	282	Acetylglutamate kinase; N-acetyl-L-glutamate kinas	99.97
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	99.97
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	99.97
2buf_A	300	Acetylglutamate kinase; acetyglutamate kinase, ADP	99.97
3d40_A	286	FOMA protein; fosfomycin, antibiotic resistance, k	99.97
1gs5_A	258	Acetylglutamate kinase; carbamate kinase, amino ac	99.97
2we5_A	310	Carbamate kinase 1; arginine catabolism, arginine	99.97
2e9y_A	316	Carbamate kinase; transferase, structural genomics	99.97
1e19_A	314	Carbamate kinase-like carbamoylphosphate synthetas	99.96
3l86_A	279	Acetylglutamate kinase; ARGB, amino-acid biosynthe	99.96
3zzh_A	307	Acetylglutamate kinase; transferase, arginine bios	99.96
3d2m_A	456	Putative acetylglutamate synthase; protein-COA-Glu	99.95
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	99.95
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	99.95
4ab7_A	464	Protein Arg5,6, mitochondrial; transferase, argini	99.94
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	99.94
3s6g_A	460	N-acetylglutamate kinase / N-acetylglutamate SYNT;	99.94
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	99.94
3kzf_A	317	Carbamate kinase; arginine dihydrolase pathway, gi	99.93
4axs_A	332	Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm	99.93
3s6k_A	467	Acetylglutamate kinase; synthase, transferase; 2.8	99.92

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.8e-44  Score=299.57  Aligned_cols=205  Identities=55%  Similarity=0.906  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|++++++|+++|||||||++++++.... .++++...++++++++++|+.+++.+|+++|+++..|++++..++.
T Consensus        76 ~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~-~gl~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~  154 (281)
T 3nwy_A           76 QVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQ-LGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVA  154 (281)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCTTC---CCTTT-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCGGGS
T ss_pred             HHHHHHHHHHHCCCeEEEEECChhHhhhHHHHh-cCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccccc
Confidence            589999999999999999999999988764322 4677777889999999999989999999999999889999888887


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  161 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  161 (219)
                      ++|++.+++++|+.|.|||++++.|.++++||++|+++|.+++||+|+++|||||||++||+.+|++++|+++++.|+.+
T Consensus       155 ~~~~~~~~l~lL~~g~IpVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~  234 (281)
T 3nwy_A          155 EPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLD  234 (281)
T ss_dssp             EECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHT
T ss_pred             cccchHHHHHHHHcCCeEEEECCCCCCCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHH
Confidence            77777676789999999999998888999999999999999999999999999999999999999999999999999877


Q ss_pred             CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      .|.+.+|++|+..|.++|++++|+|+++|+.|.++|+|+.+||+|.
T Consensus       235 ~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~  280 (281)
T 3nwy_A          235 RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT  280 (281)
T ss_dssp             TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred             cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence            7888999999999999999999999999999999999999999995

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A

Probab=100.00  E-value=2.3e-43  Score=290.27  Aligned_cols=206  Identities=50%  Similarity=0.894  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      ++|++|+++++.|+++|||||||+++++.. +...|++....+.++++++++|..++.++|++.|+++..+++++...+.
T Consensus        36 ~la~~i~~l~~~G~~vviV~gGG~~~~~~~-~~~~g~~~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~~~~~v~  114 (243)
T 3ek6_A           36 RLAHEVIEAQQAGAQVALVIGGGNIFRGAG-LAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVC  114 (243)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECSTTTSCSTT-TSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBTTTB
T ss_pred             HHHHHHHHHHHCCCeEEEEECCCHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcCccc
Confidence            689999999999999999999999876542 2234677767788999999999998889999999999988888765444


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  161 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  161 (219)
                      +++..+++.++|+.|.|||++|+.|.++++||++|+++|.+++||+|+++|||||||++||+.+|+++++++++++|+.+
T Consensus       115 ~~~~~~~~~~lL~~g~IpVv~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~  194 (243)
T 3ek6_A          115 EDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIM  194 (243)
T ss_dssp             EECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHH
T ss_pred             CcCCHHHHHHHHHCCcEEEEECCCCCCcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHh
Confidence            44434556789999999999998888999999999999999999999999999999999999999999999999998877


Q ss_pred             CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      .|.++||++|+..|.++|++++|+|+++|+.+.++|+|+.+||+|.+
T Consensus       195 ~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~  241 (243)
T 3ek6_A          195 QGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG  241 (243)
T ss_dssp             HTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred             CCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence            67788999999999999999999999999999999999999999986

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3

Probab=100.00  E-value=7.5e-43  Score=286.72  Aligned_cols=206  Identities=53%  Similarity=0.899  Sum_probs=183.8

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|+++++.|+++|||||||++++++. +..++++..+.+.++++++.+|..++.++|.++|+++.++++.+..++.
T Consensus        34 ~~~~~i~~l~~~g~~vviV~GgG~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~  112 (239)
T 1ybd_A           34 QTVGEIAEVVKMGVQVGIVVGGGNIFRGVS-AQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIA  112 (239)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCHHHHHHHH-HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSC
T ss_pred             HHHHHHHHHHHCCCeEEEEECCcHHHhchh-HHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccccc
Confidence            589999999999999999999999988764 2234577667778888999999998788999999999888887766555


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  161 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  161 (219)
                      +.|.+.++.++|+.|.|||++++.|.+++++|++|+++|.+|+||+|+|||||||||++||+.+|++++|++++++|+.+
T Consensus       113 ~~~~~~~~~~ll~~g~ipVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~  192 (239)
T 1ybd_A          113 ETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALL  192 (239)
T ss_dssp             EECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHH
T ss_pred             cchhHHHHHHHHhCCcEEEEECCccCCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHH
Confidence            44545555588999999999988888999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      +|.++||++++..|.++|++++|+|+++|+.+.++++|+.+||+|.+
T Consensus       193 ~g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~  239 (239)
T 1ybd_A          193 KNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC  239 (239)
T ss_dssp             TTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred             hcccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence            88889999999999999999999999999999999999999999974

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*

Probab=100.00  E-value=1.8e-42  Score=284.58  Aligned_cols=205  Identities=53%  Similarity=0.874  Sum_probs=176.1

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCC-CCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSG-LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|+++++.|+++|||||||++++++... ..| ++..+.+.++++++.+|+.+++.+|+++|++++++++.+....
T Consensus        34 ~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~-~~G~~~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~~d~~~~  112 (240)
T 4a7w_A           34 HIAKEIKSLVENDIEVGIVIGGGNIIRGVSAA-QGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEI  112 (240)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCTTTC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTT
T ss_pred             HHHHHHHHHHHCCCcEEEEECCcHHHhHhHHH-hcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecHHHcCcc
Confidence            58999999999999999999999988776532 246 6776778899999999999998899999999998888776543


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                      .+++..+.+.++|+.|.|||++|+.|.++++||++|+++|.+|+||+|++||||||||++||+.+|++++++++++.|+.
T Consensus       113 ~~~~~~~~i~~lL~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~  192 (240)
T 4a7w_A          113 CESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDAL  192 (240)
T ss_dssp             SEECCHHHHHHHHHTTCEEEEESTTSCTTSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHH
T ss_pred             cCcCcHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHH
Confidence            33332245667899999999999878889999999999999999999999999999999999999999999999999988


Q ss_pred             hCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCC-CCceEEe
Q 027731          161 SKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLIG  207 (219)
Q Consensus       161 ~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~-~~GT~i~  207 (219)
                      +.|.++||++|+..|.++|++++|+|+++|+.+.+++.|+ .+||+|.
T Consensus       193 ~~g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i~  240 (240)
T 4a7w_A          193 IGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK  240 (240)
T ss_dssp             HSSCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred             hcCccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceeeC
Confidence            8888899999999999999999999999999999888766 5799983

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*

Probab=100.00  E-value=2e-42  Score=285.51  Aligned_cols=206  Identities=44%  Similarity=0.807  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|+++++.|+++|||||||++++++. +..++++.++.+.++++++++|..++.++|.++|+++.++++.+..++.
T Consensus        35 ~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~-~~~~g~~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~~~  113 (247)
T 2a1f_A           35 RMAVEIKELVEMGVEVSVVLGGGNLFRGAK-LAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGIC  113 (247)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTTCCCHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTS
T ss_pred             HHHHHHHHHHHCCCeEEEEECCChHhcchh-HHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccccccccc
Confidence            589999999999999999999999987764 2234577777888899999999997888999999999988888766555


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  161 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  161 (219)
                      ++|.+.++.++|+.|.|||++|+.|.+++++|++|+++|.+|+||+|+|||||||||++||+.+|++++|++++++|+.+
T Consensus       114 ~~~~~~~~~~ll~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~  193 (247)
T 2a1f_A          114 DTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVID  193 (247)
T ss_dssp             EECCHHHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHH
T ss_pred             chhhHHHHHHHHhCCCEEEEeCCcCCCCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHH
Confidence            44555566678999999999998788899999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      +|.++||++|+..|.+.|++++|+|+++|+.+.++++|+.+||+|..
T Consensus       194 ~g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~  240 (247)
T 2a1f_A          194 KELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE  240 (247)
T ss_dssp             TTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECC
T ss_pred             cCccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEee
Confidence            88889999999999999999999999999999999999999999975

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3

Probab=100.00  E-value=6.7e-42  Score=283.21  Aligned_cols=208  Identities=51%  Similarity=0.871  Sum_probs=183.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|+++++.|+++|||||||+++.++. +..++++..+.+.++++++.+|..++.++|.++|+++.++++.+..++.
T Consensus        34 ~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~-~~~lg~~~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~~  112 (252)
T 1z9d_A           34 AIAKEIAEVHVSGVQIALVIGGGNLWRGEP-AADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVA  112 (252)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTTCCHHH-HHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTTB
T ss_pred             HHHHHHHHHHhCCCEEEEEECCChHhccch-HHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecccccccc
Confidence            589999999999999999999999877653 2223577777778888999999997888999999999988887766554


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeee-ccCccccCCCCCCCCCcccccccHHHHh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT-NVDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liilt-DV~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                      ++|.+.++.++|+.|.|||++|+.|.+++++|++|+++|.+|+||+|+|+| ||||||++||+.+|++++|+++++.|+.
T Consensus       113 ~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~  192 (252)
T 1z9d_A          113 EPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVI  192 (252)
T ss_dssp             EECCHHHHHHHHHTTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHH
T ss_pred             CcchHHHHHHHHhCCCEEEEeCCcCCCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHH
Confidence            445555666789999999999987888999999999999999999999999 9999999999999999999999999988


Q ss_pred             hCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          161 SKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       161 ~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      +.|.++||++|+..|.+.|++++|+|+++|+.+.++|+|+..||+|.++.
T Consensus       193 ~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  242 (252)
T 1z9d_A          193 KRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV  242 (252)
T ss_dssp             TTTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred             hccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence            88888899999999999999999999999999999999999999998754

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}

Probab=100.00  E-value=8.8e-42  Score=283.08  Aligned_cols=204  Identities=38%  Similarity=0.687  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|++++ .|+++|||||||++++++. +..++++..+.+.++++++.+|..++.++|.++|+++.++++++...+.
T Consensus        51 ~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~-~~~~g~~~~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~~~~~  128 (256)
T 2va1_A           51 DLAEQIEKIS-KKYIVSIVLGGGNIWRGSI-AKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLV  128 (256)
T ss_dssp             HHHHHHHHHT-TTSEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCCTTTC
T ss_pred             HHHHHHHHHh-CCCEEEEEECCcHHhccch-HHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeccccc
Confidence            5789999999 8999999999999987754 2334577666777888999999998788999999999889888877766


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeec-cCccccCCCCCCCCCcccccccHHHHh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltD-V~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                      ++|++.++..+|+.|.|||++|..|.++++||++|+++|.+|+||+|+|+|| |||||++||+.+|++++|++++++|+.
T Consensus       129 ~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~  208 (256)
T 2va1_A          129 HESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMAL  208 (256)
T ss_dssp             EECCHHHHHHHHHTTCEEEEESTTSSSSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHH
T ss_pred             chhhHHHHHHHHhCCcEEEEECCCCCCCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHH
Confidence            6666656667899999999999878899999999999999999999999999 999999999999999999999999988


Q ss_pred             hCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          161 SKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       161 ~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      +++.++||++|+..|.++|++++|+|+++|+.+.++|+|+..||+|.
T Consensus       209 ~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~  255 (256)
T 2va1_A          209 TQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS  255 (256)
T ss_dssp             HHTCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred             HhccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence            76667789999999999999999999999999999999999999996

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}

Probab=100.00  E-value=5.8e-40  Score=272.01  Aligned_cols=208  Identities=44%  Similarity=0.773  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHh-cCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMES-IGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~gi~a~~~~~~~~~~~   80 (219)
                      +++++|+++++.|+++|||||||++.+++. +..+++++...+.++++++.+|+.++..+|.+ +|+++.++++.+...+
T Consensus        39 ~~a~~I~~l~~~G~~vViV~GgG~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v  117 (255)
T 2jjx_A           39 HIANEILSIVDLGIEVSIVIGGGNIFRGHL-AEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAV  117 (255)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEESSCCCSS
T ss_pred             HHHHHHHHHHHCCCeEEEEECchHHHhhhH-HHHcCCCCCChHHHhHHHHHHHHHHHHHHHHhhcCCceEEecHHHcCcc
Confidence            589999999999999999999999876554 22345665566778889999999978899999 9999998887765544


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeee-ccCccccCCCCCCCCCcccccccHHHH
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT-NVDGVYDDNPRRNPNARLLDTLTYQEV  159 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liilt-DV~Gv~~~dP~~~~~a~~i~~i~~~e~  159 (219)
                      .+++...++.++|+.|.|||++|..|++++++|++|+++|.+|+||+|+||| ||||||++||+.+|++++|++++++|+
T Consensus       118 ~~~~~~~~~~~lL~~g~IpVi~gg~g~~~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~  197 (255)
T 2jjx_A          118 AEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDV  197 (255)
T ss_dssp             SEECCHHHHHHHHHTTCEEEEESTTSCSSCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHH
T ss_pred             cCcccHHHHHHHHhCCcEEEEeCCCCCCccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHH
Confidence            3333334455889999999999765678899999999999999999999999 999999999999999999999999999


Q ss_pred             hhCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          160 TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       160 ~~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      .++|.++|++.|++.+.+.|++++|+|+++|+.+.++++|+..||+|.++.
T Consensus       198 ~~~G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~~  248 (255)
T 2jjx_A          198 VRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA  248 (255)
T ss_dssp             HHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESSC
T ss_pred             HHcCCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecCc
Confidence            888989999999999998999999999999999999999998999998743

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*

Probab=100.00  E-value=3.3e-39  Score=263.01  Aligned_cols=193  Identities=25%  Similarity=0.420  Sum_probs=167.0

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHH-HhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|+++++.|+++|||||||++++++. .+...++++.+.+.++++++.+|+.+++..|+++|+++   ..     .
T Consensus        22 ~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~---~~-----~   93 (226)
T 2j4j_A           22 VLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMH---VP-----Q   93 (226)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC---CC-----S
T ss_pred             HHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCC---Cc-----C
Confidence            588999999999999999999999988752 23345677777888899999999999888999999864   11     1


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                       +   .+++.++|+.|.|||++|  |.+++++|++|+++|.+|+||+|+|||||||||++||+.+|++++|+++++.|+.
T Consensus        94 -~---~~~i~~ll~~g~ipVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~  167 (226)
T 2j4j_A           94 -S---LEEFIQDWSHGKVVVTGG--FQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLR  167 (226)
T ss_dssp             -S---HHHHHHHHTTSSBEEECC--CSTTSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHH
T ss_pred             -C---HHHHHHHHHCCCEEEEcC--CCCCCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHH
Confidence             1   134667899999999999  6789999999999999999999999999999999999999999999999999876


Q ss_pred             hC--------CCC--CchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          161 SK--------DLS--VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       161 ~~--------g~~--~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      ++        |+|  ++|++++..|.++|++++|+|+++|+.+.++|+|+..||+|.+
T Consensus       168 ~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~  225 (226)
T 2j4j_A          168 KILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP  225 (226)
T ss_dssp             HHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred             HHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence            54        455  8899999999999999999999999999999999999999975

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*

Probab=100.00  E-value=5.6e-38  Score=258.47  Aligned_cols=192  Identities=28%  Similarity=0.421  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHH-HhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|+++++ |+++|||||||++++++. .+..+++++...+.++++++.+|..+++..|.++|++..   .     +
T Consensus        43 ~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~---~-----~  113 (244)
T 2brx_A           43 EIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVV---V-----E  113 (244)
T ss_dssp             HHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSC---B-----C
T ss_pred             HHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCCC---c-----C
Confidence            58999999999 999999999999988742 234467887778888999999999998889999997641   0     1


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                       +   .+++.++|+.|.|||++|  |.+++++|++|+++|.+|+||+|+|+|||||||++||+.+|++++|+++++.|+.
T Consensus       114 -~---~~~i~~lL~~g~IpVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~  187 (244)
T 2brx_A          114 -D---FWEAWKAVQLKKIPVMGG--THPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELL  187 (244)
T ss_dssp             -S---HHHHHHHHHTTCBCEECC--CSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHH
T ss_pred             -C---HHHHHHHHhCCCEEEEcC--CCCCCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHH
Confidence             1   134567899999999999  7788999999999999999999999999999999999999999999999999876


Q ss_pred             hC----C----C-CCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          161 SK----D----L-SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       161 ~~----g----~-~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      ++    |    + +.+++.|++.+.+.+++++|+|+++|+.+.++|+|+.+||+|.+
T Consensus       188 ~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~  244 (244)
T 2brx_A          188 EIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  244 (244)
T ss_dssp             HHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             HHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence            54    2    2 45688899999989999999999999999999999999999964

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3

Probab=100.00  E-value=2.8e-36  Score=244.52  Aligned_cols=189  Identities=35%  Similarity=0.474  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHH-HhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|+++++ |+++|||||||++++++. .++..++++.+.+.++++++.+|..+++.+|+.. +.   +   +  .+
T Consensus        21 ~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~---~---~--~~   90 (219)
T 2ij9_A           21 EFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSA-AK---K---V--PV   90 (219)
T ss_dssp             HHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCTTB-CS---S---C--CS
T ss_pred             HHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHcCCCccchHHHHHHHHHHHHHHHHHHHHHh-cC---C---C--cC
Confidence            58999999999 999999999999988742 2334568877888899999999999987666543 21   1   0  01


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                       +   .+.+.++|+.|.|||++|  |.+++++|++|+++|.+|+||+|+|+|||||||++||+.+|++++|+++++.|+.
T Consensus        91 -~---~~~i~~ll~~g~ipVi~~--g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~  164 (219)
T 2ij9_A           91 -D---FMEAEELSKLYRVVVMGG--TFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLV  164 (219)
T ss_dssp             -S---HHHHHHHHTTCSEEEECC--CSSSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHH
T ss_pred             -C---HHHHHHHHHCCCEEEEeC--CCCCCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHH
Confidence             1   134667899999999999  7788999999999999999999999999999999999999999999999999876


Q ss_pred             hC----CC-----CCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          161 SK----DL-----SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       161 ~~----g~-----~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      ++    |.     +..|+.|++.+.+.+++++|+|+ +|+.+.++|+|+.+||+|+
T Consensus       165 ~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~  219 (219)
T 2ij9_A          165 EIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             HHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred             HHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence            54    22     45688999999999999999999 9999999999999999984

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A

Probab=100.00  E-value=2.1e-35  Score=255.60  Aligned_cols=206  Identities=20%  Similarity=0.302  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCc--ChHHHHHHHHHHH---HHHHHHHHHHhcCCCeeEecccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDR--SSADYIGMLATVM---NAIFLQATMESIGIPTRVQTAFR   76 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~l~~~~l~~~gi~a~~~~~~~   76 (219)
                      +++++|+++++.|+++||||||| ++.++..++   ++.  .+.+..+++++..   ...++...|+++|+++. +...+
T Consensus        30 ~la~~Ia~l~~~G~~vVlV~gGg-i~~g~~~lg---~~~~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~-qvllt  104 (367)
T 2j5v_A           30 ELVRQCAQLHAAGHRIVIVTSGA-IAAGREHLG---YPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVG-QMLLT  104 (367)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCH-HHHHHHHHT---SCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEE-EEEEC
T ss_pred             HHHHHHHHHHhCCCcEEEEEcCH-HHHHHHHcC---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceE-EEEEe
Confidence            58999999999999999999765 666776665   433  3456666655432   24456789999999986 44455


Q ss_pred             cccccc--hHHHH--HHHHHHhCCCEEEEeCC-----CCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCC
Q 027731           77 MSEVAE--PYIRR--RAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPN  147 (219)
Q Consensus        77 ~~~~~~--~~~~~--~~~~~l~~g~ipIv~g~-----~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~  147 (219)
                      ..++..  ++++.  .+..+|+.|.|||++++     .+..+++||++|+++|.+++||+|+|+|||||||++||+.+|+
T Consensus       105 ~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~  184 (367)
T 2j5v_A          105 RADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQ  184 (367)
T ss_dssp             GGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC-------------
T ss_pred             cccccCceEEEhHHHHHHHHHHCCCEEEECCCCceecccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCC
Confidence            555543  34443  34578999999999965     2356899999999999999999999999999999999999999


Q ss_pred             CcccccccH--HHHhhC--------CCCCc--hHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCCC
Q 027731          148 ARLLDTLTY--QEVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS  212 (219)
Q Consensus       148 a~~i~~i~~--~e~~~~--------g~~~~--k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~~  212 (219)
                      +++|+++++  .|+.++        |+++|  |++|+..|.++|++++|+|+++|+.|.++++|+..||+|.++...
T Consensus       185 a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~~~~  261 (367)
T 2j5v_A          185 AELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATP  261 (367)
T ss_dssp             -----------------------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCCSSC
T ss_pred             CeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcCccc
Confidence            999999999  776543        34444  889999999999999999999999999999999999999876544

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=100.00  E-value=1.8e-34  Score=241.48  Aligned_cols=197  Identities=25%  Similarity=0.300  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhc-cCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|++++ .|+++|||||||++++.+..++ ..+++.+..+.+++.++.+|..+++.++.+.|++.+...       
T Consensus        60 ~l~~~I~~l~-~G~~vVlV~GGg~~~~~~~~~~~~~gl~~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~~-------  131 (276)
T 2ogx_A           60 PLVEELRKLL-PEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHP-------  131 (276)
T ss_dssp             HHHHHHHHHT-TTCEEEEEECCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCHH-------
T ss_pred             HHHHHHHHHh-CCCeEEEEECcHHHHHHHHhccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-------
Confidence            5889999998 7999999999999876544333 256766677778877788999888877778898754211       


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCC--------C--CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCC--CCCCC
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGT--------G--NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR--RNPNA  148 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~--------g--~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~--~~~~a  148 (219)
                         ...+.+..+|+.|.|||++|+.        |  .++++||++|+++|.+|+||+|+|+|||||||++||+  .+|++
T Consensus       132 ---~~~~~i~~lL~~g~IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a  208 (276)
T 2ogx_A          132 ---TVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQA  208 (276)
T ss_dssp             ---HHHHHHHHHHHHSSEEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGC
T ss_pred             ---ChHHHHHHHHhCCCEEEEcCCcccccccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCC
Confidence               1113355789999999999951        1  2579999999999999999999999999999999998  89999


Q ss_pred             cccccccHHHHhhC-CCCCchHHHHHHHH--hCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          149 RLLDTLTYQEVTSK-DLSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       149 ~~i~~i~~~e~~~~-g~~~~k~~aa~~a~--~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      ++|+++++.|+.++ |.++|++++...+.  +.+++++|+|+++|+.+.++|+|+..||+|.++
T Consensus       209 ~~i~~i~~~e~~~~~g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  272 (276)
T 2ogx_A          209 RFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG  272 (276)
T ss_dssp             CEESEEEHHHHHTSCSCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred             eEcceeCHHHHHHHhCcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence            99999999999887 67777776666555  558899999999999999999999999999865

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=100.00  E-value=2.7e-34  Score=239.51  Aligned_cols=200  Identities=25%  Similarity=0.316  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhccCCCCcCh-------HHHHHHHHH-----HHHHHHHHHHHHhcCCC
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNSGLDRSS-------ADYIGMLAT-----VMNAIFLQATMESIGIP   68 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~-----~~~~~l~~~~l~~~gi~   68 (219)
                      +++++|++++  +.++|||||||++.+. ..+.+   +..+.       .+..++..+     .+|..+ .++|+++|++
T Consensus        31 ~l~~~i~~l~--~~~~vlVhGGG~~~~~~~~~~g---i~~~~~~~~g~~~~~~G~rvT~~~~~~ln~~l-~~~L~~~G~~  104 (269)
T 3ll9_A           31 RIASEIGNAS--PSSLMIVHGAGSFGHPFAGEYR---IGSEIENEEDLRRRRFGFALTQNWVKKLNSHV-CDALLAEGIP  104 (269)
T ss_dssp             HHHHHHHHHC--CSSEEEEECCGGGTHHHHHHHT---TTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCC
T ss_pred             HHHHHHHHhc--CCCEEEEECCcHHHHHHHHHcC---CCcccccCcccccccchhhHHHHHHHHHHHHH-HHHHHHCCCc
Confidence            4778887765  5899999999998653 23333   43211       113444444     378765 5799999999


Q ss_pred             eeEeccccccccc--c-hHHH-HHHHHHHhCCCEEEEeCC-----C--C-CCccChHHHHHHHHHhcCCceEEeeeccCc
Q 027731           69 TRVQTAFRMSEVA--E-PYIR-RRAVRHLEKGRVVIFAAG-----T--G-NPFFTTDTAAALRCAEINAEVVLKATNVDG  136 (219)
Q Consensus        69 a~~~~~~~~~~~~--~-~~~~-~~~~~~l~~g~ipIv~g~-----~--g-~~~~~sD~~Aa~lA~~l~Ad~liiltDV~G  136 (219)
                      ++++++.+.....  + .+++ +.+..+|+.|.|||++++     .  + .+++++|++|+++|.+|+||+|+|+|||||
T Consensus       105 a~~l~g~~~~~~~~g~v~~v~~~~i~~lL~~g~ipVi~~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~G  184 (269)
T 3ll9_A          105 AVSMQPSAFIRAHAGRISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVILGTDVDG  184 (269)
T ss_dssp             EEECCGGGTEEEETTEEEEECCHHHHHHHHTTCEEEEECEEEEBSCTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSS
T ss_pred             EEEEcchHcCeEecCeeeeecHHHHHHHHHCCCEEEECCCEEecccccCcceecchHHHHHHHHHHcCCCeEEEecCCCE
Confidence            9998877643221  1 1122 345679999999999983     2  2 346899999999999999999999999999


Q ss_pred             cccCCCCCCCCCcccccccHHHHhhC----------CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCC-ceE
Q 027731          137 VYDDNPRRNPNARLLDTLTYQEVTSK----------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERV-GTL  205 (219)
Q Consensus       137 v~~~dP~~~~~a~~i~~i~~~e~~~~----------g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~-GT~  205 (219)
                      ||++||+.+|++++|+++++.|+.++          |+|..|+++|..+.++|++++|+|++.|+.+.++|+|+.+ ||+
T Consensus       185 v~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~  264 (269)
T 3ll9_A          185 VYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTR  264 (269)
T ss_dssp             CBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHHTTCCEEEEESSSTTHHHHHHHTCCCSSEE
T ss_pred             EEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCeEEEEeCCCchHHHHHHCCCCCCcEE
Confidence            99999999999999999999876532          4567799999999999999999999999999999999998 999


Q ss_pred             Ee
Q 027731          206 IG  207 (219)
Q Consensus       206 i~  207 (219)
                      |.
T Consensus       265 i~  266 (269)
T 3ll9_A          265 IT  266 (269)
T ss_dssp             C-
T ss_pred             EE
Confidence            97

>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3

Probab=100.00  E-value=5.9e-34  Score=235.38  Aligned_cols=200  Identities=17%  Similarity=0.160  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHH---HHHHHHHHhcCCCeeEecccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA---IFLQATMESIGIPTRVQTAFRMS   78 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~l~~~gi~a~~~~~~~~~   78 (219)
                      +++++|+++++. +++||||||| ...+...++   +........+++++..+.   .++.++|.++|+++..+ ..+..
T Consensus        26 ~~~~~i~~l~~~-~~vVlVhgGg-~~~~~~~~g---~~~~~~~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i-~~~~~   99 (251)
T 2ako_A           26 NLVAFLAKLMEK-YEVILVTSAA-ISAGHTKLD---IDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQI-LLTGK   99 (251)
T ss_dssp             HHHHHHHHHHHH-SEEEEEECCH-HHHHHHHCC---CCSSSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE-EECTG
T ss_pred             HHHHHHHHHHhC-CCEEEEECCH-HHHHHHHhC---CccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE-Eeccc
Confidence            589999999888 9999999877 445555555   333112222344443333   23567899999998743 23333


Q ss_pred             cccc--hHHHH-H-HHHHHhCCCEEEEeCCC-----CCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCc
Q 027731           79 EVAE--PYIRR-R-AVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNAR  149 (219)
Q Consensus        79 ~~~~--~~~~~-~-~~~~l~~g~ipIv~g~~-----g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~  149 (219)
                      ++..  ++++. + +..+|+.|.|||+++++     +.+++++|++|+++|.+|+||+|+|+|||||||++||+.+|+++
T Consensus       100 ~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~  179 (251)
T 2ako_A          100 DFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAK  179 (251)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCC
T ss_pred             hhcCcceEehHHHHHHHHHHCCCEEEEeCCCceeecceeecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCe
Confidence            3332  24433 3 44689999999999642     23579999999999999999999999999999999999999999


Q ss_pred             ccccccHH--HHhhC--------CC--CCchHHHHHHHHhCCCcEEEEecCCCchHHH--HhcCCCCceEEe
Q 027731          150 LLDTLTYQ--EVTSK--------DL--SVMDMTAITLCQENNIPVVVFNLNQPGNIAK--AIQGERVGTLIG  207 (219)
Q Consensus       150 ~i~~i~~~--e~~~~--------g~--~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~--~l~g~~~GT~i~  207 (219)
                      +|+++++.  |+.++        ++  |.+|++|+..|.++|++++|+|+++|+.+.+  +|+|+..||+|.
T Consensus       180 ~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~~~l~~~~~~~g~~~GT~i~  251 (251)
T 2ako_A          180 RLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE  251 (251)
T ss_dssp             BCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHSCCCCSSEEEC
T ss_pred             EeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCChhhhhhhHHhcCCCCceEeC
Confidence            99999997  76543        23  4669999999999999999999999999999  999998999984

>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2

Probab=100.00  E-value=4.5e-33  Score=235.58  Aligned_cols=205  Identities=19%  Similarity=0.191  Sum_probs=158.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHH-HhHHHhcc-----CCCCcCh---HHHHHHH-HHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN-----SGLDRSS---ADYIGML-ATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~-~~~~~~~~-----~~~~~~~---~~~~~~~-~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.+++.|+++|||||||++. ..+..++.     .|++.+.   .+.++++ ...++.. +.+.|+++|+++++
T Consensus        45 ~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~l~~~~~~~~G~l~~~-l~~~L~~~g~~av~  123 (299)
T 2ap9_A           45 AFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGRE-LVNLINAHGPYAVG  123 (299)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCCSSSSCCBCHHHHHHHHHHHHHTHHHH-HHHHHTTSSSCEEE
T ss_pred             HHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCcccccCCcccCCHHHHHHHHHHHhhHHHHH-HHHHHHhCCCCceE
Confidence            57899999999999999999999854 44455442     1333332   3444443 3356666 46899999999998


Q ss_pred             eccccccccc-ch-------------------HHH-HHHHHHHhCCCEEEEeCC----CCCCc-cChHHHHHHHHHhcCC
Q 027731           72 QTAFRMSEVA-EP-------------------YIR-RRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINA  125 (219)
Q Consensus        72 ~~~~~~~~~~-~~-------------------~~~-~~~~~~l~~g~ipIv~g~----~g~~~-~~sD~~Aa~lA~~l~A  125 (219)
                      +++.+...+. ++                   .++ +.+..+|+.|.|||++++    .|..+ +++|++|+.+|.+|+|
T Consensus       124 lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVv~~v~~~~~G~~~~l~~D~~Aa~lA~~l~A  203 (299)
T 2ap9_A          124 ITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGA  203 (299)
T ss_dssp             EETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEEESEEECTTCCEEEECHHHHHHHHHHHTTC
T ss_pred             echhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEEECCeeECCCCCEEEECHHHHHHHHHHHcCC
Confidence            7766532111 00                   012 335578999999999984    34444 5999999999999999


Q ss_pred             ceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---C--CCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHHhc
Q 027731          126 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D--LSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQ  198 (219)
Q Consensus       126 d~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g--~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~l~  198 (219)
                      |+|+|||||||||++||+   ++++|++++++|+.++   +  +|.+|++|+..+.++|++ ++|+|+++|+.+ .++|+
T Consensus       204 d~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~  280 (299)
T 2ap9_A          204 EKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFT  280 (299)
T ss_dssp             SEEEEEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHS
T ss_pred             CEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhc
Confidence            999999999999999997   4689999999988764   3  445589999999999998 999999999987 78999


Q ss_pred             CCCCceEEecCC
Q 027731          199 GERVGTLIGGTW  210 (219)
Q Consensus       199 g~~~GT~i~~~~  210 (219)
                      |+..||+|.++.
T Consensus       281 ~~~~GT~i~~~~  292 (299)
T 2ap9_A          281 DAGTGTKVVRGE  292 (299)
T ss_dssp             CCCCSEEEECCC
T ss_pred             CCCCcEEEecCC
Confidence            999999998653

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=100.00  E-value=2.3e-32  Score=228.03  Aligned_cols=195  Identities=23%  Similarity=0.358  Sum_probs=151.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhcc-CCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGN-SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|+++++. +++|||||||++++++..++. .+++....+...+.+..++..++...|+++|++.+     +..++
T Consensus        58 ~la~~I~~l~~~-~~vVlVhGGg~~~~~~~~~~~~~g~~~~~~~~~~~~a~G~~~l~~~~~l~~~G~~~v-----t~~d~  131 (270)
T 2ogx_B           58 PLVDEIVAARKN-HKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNAAMLGQLLAKHGIPVV-----GGAGL  131 (270)
T ss_dssp             HHHHHHHHHTTT-CEEEEEECCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBC-----CSSTT
T ss_pred             HHHHHHHHHhcC-CcEEEEECChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcee-----cHhhH
Confidence            589999999887 999999999998776554432 35644444555555555677777778888998732     11122


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCC------------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCC
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTG------------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNA  148 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g------------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a  148 (219)
                      .      .+.++|+.|.|||++|+.+            ++++++|++|+++|.+++||+|+|+|||||||++||+.+|++
T Consensus       132 ~------~i~~lL~~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a  205 (270)
T 2ogx_B          132 S------AVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDA  205 (270)
T ss_dssp             C------HHHHHCTTCCEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTC
T ss_pred             H------HHHHHHhCCCEEEEeCCccccccccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCC
Confidence            1      3557899999999998621            356999999999999999999999999999999999999999


Q ss_pred             cccccccHHHHhhCC--CCCchHHHHHHHH--hCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          149 RLLDTLTYQEVTSKD--LSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       149 ~~i~~i~~~e~~~~g--~~~~k~~aa~~a~--~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      ++|++++++|+.++.  +..++......+.  ..+++++|+|+++|+.+.++|+|+.+||+|.+
T Consensus       206 ~~i~~i~~~e~~~~~~~g~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~  269 (270)
T 2ogx_B          206 TFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA  269 (270)
T ss_dssp             CEESEEEHHHHHHTTCCCTTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             eEcceeCHHHHHHHhcCCCcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence            999999999988762  2244433333322  25679999999999999999999999999975

>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}

Probab=100.00  E-value=1.4e-32  Score=232.41  Aligned_cols=203  Identities=16%  Similarity=0.267  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHH-HhHHHhcc-----CCCCc---ChHHHHHHHH-HHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN-----SGLDR---SSADYIGMLA-TVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~-~~~~~~~~-----~~~~~---~~~~~~~~~~-~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+++++.|+++|||||||++. ..+..++.     .|++.   .+.+.+++++ ..+|.. +...|+++|+++++
T Consensus        56 ~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~l~~~~~~~~G~~n~~-l~~~l~~~g~~a~~  134 (298)
T 2rd5_A           56 SVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKN-LVSLINAAGATAVG  134 (298)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHHHHHHHHHHTHHHH-HHHHHHHTTSCEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHHHHHHHHHHhchHHHH-HHHHHHhCCCCccc
Confidence            57899999999999999999999855 33444441     12221   2345555554 456665 45799999999988


Q ss_pred             eccccccc-----------ccc----hHHH-HHHHHHHhCCCEEEEeCC----CCCCc-cChHHHHHHHHHhcCCceEEe
Q 027731           72 QTAFRMSE-----------VAE----PYIR-RRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLK  130 (219)
Q Consensus        72 ~~~~~~~~-----------~~~----~~~~-~~~~~~l~~g~ipIv~g~----~g~~~-~~sD~~Aa~lA~~l~Ad~lii  130 (219)
                      +++.+...           +..    .+++ +.+.++|+.|.|||+++.    .|..+ +++|++|+++|.+|+||+|+|
T Consensus       135 l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~Lii  214 (298)
T 2rd5_A          135 LSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLIL  214 (298)
T ss_dssp             EETTGGGCEEEEECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEESEEECTTSCEEEECHHHHHHHHHHHHTCSEEEE
T ss_pred             cChHHCCEEEEEeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEE
Confidence            77554321           110    1123 235578999999999984    34444 499999999999999999999


Q ss_pred             eeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHHhcCCC
Q 027731          131 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGER  201 (219)
Q Consensus       131 ltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~l~g~~  201 (219)
                      +|||||||++||+  | +++|++++++|+.++       |+|..|++++..+.++|++ ++|+|++.|+.| .++|+|+.
T Consensus       215 lTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~  291 (298)
T 2rd5_A          215 LTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEG  291 (298)
T ss_dssp             EESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSC
T ss_pred             EeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCC
Confidence            9999999999997  4 899999999987653       3345589999999999998 999999999999 79999999


Q ss_pred             CceEEec
Q 027731          202 VGTLIGG  208 (219)
Q Consensus       202 ~GT~i~~  208 (219)
                      .||+|.+
T Consensus       292 ~GT~i~~  298 (298)
T 2rd5_A          292 AGTMITG  298 (298)
T ss_dssp             SEEEEEC
T ss_pred             CceEEeC
Confidence            9999974

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*

Probab=100.00  E-value=2.9e-33  Score=230.92  Aligned_cols=188  Identities=21%  Similarity=0.258  Sum_probs=144.3

Q ss_pred             CCCeEE-EEECCchHHHh-HHHhccCCCCcCh--HHHHHHH-----HHHHHHHHHHHHHHhcCCCeeEecccccccccch
Q 027731           13 LGIEVA-IVVGGGNIFRG-ASAAGNSGLDRSS--ADYIGML-----ATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP   83 (219)
Q Consensus        13 ~g~~vv-iV~GgG~~~~~-~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~~   83 (219)
                      .|+++| ||||||++++. ...+   |++...  .+..++.     ...+|..++ ++|.++|+++.++++.+.....+.
T Consensus        38 ~G~~vv~lVhGGG~~~~~~~~~~---gi~~~~~~~d~~gl~~t~~~~~~ln~~~v-~~l~~~G~~a~~l~~~~~~~~g~v  113 (249)
T 3ll5_A           38 GIEDLVCVVHGGGSFGHIKAMEF---GLPGPKNPRSSIGYSIVHRDMENLDLMVI-DAMIEMGMRPISVPISALRYDGRF  113 (249)
T ss_dssp             TCTTEEEEEECCGGGTHHHHHHH---TCSEECCHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCCEEECCGGGSCBSSSB
T ss_pred             cCCceEEEEECccHHHHHHHHHh---CCCcCCCccccccHHHHHHHHHHHHHHHH-HHHHHCCCcEEEEcHHHcccccEE
Confidence            399999 99999998765 2333   455432  2333332     237788777 789999999998877665433322


Q ss_pred             HHHHHHHHHHhCCCEEEEeCC-----CC-CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHH
Q 027731           84 YIRRRAVRHLEKGRVVIFAAG-----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ  157 (219)
Q Consensus        84 ~~~~~~~~~l~~g~ipIv~g~-----~g-~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~  157 (219)
                       -.+.+..+|+.|.|||++|+     .+ ..++++|++|+++|.+|+||+|+|+|||||||++||+.+|++++++++.. 
T Consensus       114 -~~~~i~~ll~~g~ipVi~~~~~~~~~~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~~-  191 (249)
T 3ll5_A          114 -DYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDT-  191 (249)
T ss_dssp             -CCHHHHHHHHTTCEEEEECEEEEEETTEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEECC-
T ss_pred             -cHHHHHHHHHCCCEEEECCCEEEcCCCceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHHH-
Confidence             11345679999999999973     11 34789999999999999999999999999999999999999999999952 


Q ss_pred             HHhh-----C--CCCCchHHHHHHH-HhCCCcEEEEecCCCchHHHHhcCCCC-ceEEe
Q 027731          158 EVTS-----K--DLSVMDMTAITLC-QENNIPVVVFNLNQPGNIAKAIQGERV-GTLIG  207 (219)
Q Consensus       158 e~~~-----~--g~~~~k~~aa~~a-~~~gi~v~I~~g~~~~~i~~~l~g~~~-GT~i~  207 (219)
                      ++..     .  |+|..|+++|..+ .++|++++|+|+++|+.+.+ |.|+.+ ||+|+
T Consensus       192 ~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~~GT~i~  249 (249)
T 3ll5_A          192 NITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGD-IGKESFIGTVIR  249 (249)
T ss_dssp             CC-------------HHHHHHHHHHHTTCTTCEEEEETTSGGGGGG-TTSTTCCSEEEC
T ss_pred             HHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCChhHHHH-hCCCCCCCEEeC
Confidence            2211     1  5667799999998 89999999999999999999 999888 99984

>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*

Probab=100.00  E-value=4.5e-32  Score=231.26  Aligned_cols=205  Identities=18%  Similarity=0.250  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHH-hHHHhcc-----CCCC---cChHHHHHHHH-HHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFR-GASAAGN-----SGLD---RSSADYIGMLA-TVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~-~~~~~~~-----~~~~---~~~~~~~~~~~-~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.+++.|+++|||||||++.+ .+..++.     .|++   +.+.+.+++++ ..+|..+ ...|+++|+++++
T Consensus        69 ~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~Rvt~~~~l~~~~~~~~G~in~~l-~~~L~~~g~~a~g  147 (321)
T 2v5h_A           69 AVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDI-VSRINTTGGRAVG  147 (321)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHHH-HHHHHHHTCCEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCccccCCcccCCHHHHHHHHHHHhChHHHHH-HHHHHhCCCCeee
Confidence            578999999999999999999998654 3444431     1222   12345555544 4566654 5799999999887


Q ss_pred             ecccccc----------cccc----hHHH-HHHHHHHhCCCEEEEeCC----CCCCcc-ChHHHHHHHHHhcCCceEEee
Q 027731           72 QTAFRMS----------EVAE----PYIR-RRAVRHLEKGRVVIFAAG----TGNPFF-TTDTAAALRCAEINAEVVLKA  131 (219)
Q Consensus        72 ~~~~~~~----------~~~~----~~~~-~~~~~~l~~g~ipIv~g~----~g~~~~-~sD~~Aa~lA~~l~Ad~liil  131 (219)
                      +++.+..          ++..    ..++ +.+..+|+.|.|||+++.    .|..++ ++|++|+++|.+|+||+|+|+
T Consensus       148 l~~~~a~~l~a~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~Liil  227 (321)
T 2v5h_A          148 FCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILL  227 (321)
T ss_dssp             ECTTGGGSEEEEECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEE
T ss_pred             eChhhccEEEeecCCCccccccceeEEecHHHHHHHHHCCCeEEEeCceECCCCCEEEeCHHHHHHHHHHHcCCCEEEEe
Confidence            7655321          2211    0122 234578999999999963    334554 999999999999999999999


Q ss_pred             eccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHHhcCCCC
Q 027731          132 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERV  202 (219)
Q Consensus       132 tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~l~g~~~  202 (219)
                      |||||||++||+   ++++|++++++|+.++       |+|.+|++|+..|.++|++ ++|+|++.|+.+ .++|+++..
T Consensus       228 TDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~  304 (321)
T 2v5h_A          228 TDTRGILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGI  304 (321)
T ss_dssp             ESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCS
T ss_pred             eCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCC
Confidence            999999999997   4899999999987653       2344489999999999998 999999999998 789999889


Q ss_pred             ceEEecCC
Q 027731          203 GTLIGGTW  210 (219)
Q Consensus       203 GT~i~~~~  210 (219)
                      ||+|.++.
T Consensus       305 GT~I~~~~  312 (321)
T 2v5h_A          305 GTMIVGSG  312 (321)
T ss_dssp             EEEEECC-
T ss_pred             ceEEECCc
Confidence            99998754

>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*

Probab=99.98  E-value=1.9e-32  Score=227.90  Aligned_cols=194  Identities=22%  Similarity=0.221  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHHCC------CeEEEEECCchHHHh-HHHhccCCCCcC---hHHH--HHHHHH-----HHHHHHHHHHHHh
Q 027731            2 AIAREVASVTRLG------IEVAIVVGGGNIFRG-ASAAGNSGLDRS---SADY--IGMLAT-----VMNAIFLQATMES   64 (219)
Q Consensus         2 ~la~~i~~l~~~g------~~vviV~GgG~~~~~-~~~~~~~~~~~~---~~~~--~~~~~~-----~~~~~l~~~~l~~   64 (219)
                      +++++|+++++.|      .++|||||||++++. ..+++   +.++   +.+.  .++..+     .+|..+ .++|.+
T Consensus        34 ~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~~~~~lg---i~~~~~~~~~~~~~G~r~T~~a~~~ln~~l-~~~l~~  109 (266)
T 3k4o_A           34 RIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKYL---KIEDGKKIFINMEKGFWEIQRAMRRFNNII-IDTLQS  109 (266)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHGGGE---EECSSSEEECCHHHHHHHHHHHHHHHHHHH-HHHHHT
T ss_pred             HHHHHHHHHHhccccccCCCCEEEEeCchHHHHHHHHHcC---CCcccCcccccccCceeHHHHHHHHHHHHH-HHHHHH
Confidence            5899999998888      999999999999776 34443   5443   1121  333333     478775 579999


Q ss_pred             cCCCeeEecccccccccc-hHHH-HHHHHHHhCCCEEEEeCC----C--CCCccChHHHHHHHHHhcCCceEEeeeccCc
Q 027731           65 IGIPTRVQTAFRMSEVAE-PYIR-RRAVRHLEKGRVVIFAAG----T--GNPFFTTDTAAALRCAEINAEVVLKATNVDG  136 (219)
Q Consensus        65 ~gi~a~~~~~~~~~~~~~-~~~~-~~~~~~l~~g~ipIv~g~----~--g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~G  136 (219)
                      +|+++.++++.+...... .+++ +.+..+|+.|.|||++++    .  +.+++++|++|+++|.+|+||+|+|+|||||
T Consensus       110 ~G~~a~~l~~~d~~~~~~g~~v~~~~i~~lL~~g~ipVi~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdG  189 (266)
T 3k4o_A          110 YDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDG  189 (266)
T ss_dssp             TTCCEEEECGGGTCEESSSCBCCCHHHHHHHHTTCEEEEECEEEEESSSCEEEECHHHHHHHHHHHHTCSEEEEEESSSS
T ss_pred             CCCcEEEeeHHHcCcccCceEecHHHHHHHHHCCCEEEEeCCEEEcCCCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCe
Confidence            999999888765432210 1222 446679999999999983    1  2467999999999999999999999999999


Q ss_pred             cccCCCCCCCCCcccccccHH---HHhh--------C--CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCc
Q 027731          137 VYDDNPRRNPNARLLDTLTYQ---EVTS--------K--DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVG  203 (219)
Q Consensus       137 v~~~dP~~~~~a~~i~~i~~~---e~~~--------~--g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~G  203 (219)
                      || +||+..|      +++..   ++.+        .  |+|..|++++..+.+   +++|+|+++|+.|.++|+|+.+|
T Consensus       190 v~-~d~~~i~------~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~---~v~I~~g~~~~~l~~~l~g~~~G  259 (266)
T 3k4o_A          190 VL-IDNKPIK------RIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC---RGFVFNGNKANNIYKALLGEVEG  259 (266)
T ss_dssp             SB-SSSSBCS------EECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC---EEEEEETTSTTHHHHHHTTCCCS
T ss_pred             EE-eCCeecC------cCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc---CEEEEeCCCccHHHHHhCCCCCc
Confidence            99 7875544      44332   2211        1  335569999988776   99999999999999999999999


Q ss_pred             eEEecC
Q 027731          204 TLIGGT  209 (219)
Q Consensus       204 T~i~~~  209 (219)
                      |+|.+.
T Consensus       260 T~i~~~  265 (266)
T 3k4o_A          260 TEIDFS  265 (266)
T ss_dssp             EEEECC
T ss_pred             eEEEeC
Confidence            999874

>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2

Probab=99.97  E-value=5.7e-31  Score=220.96  Aligned_cols=200  Identities=20%  Similarity=0.241  Sum_probs=153.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHH-HhHHHhcc-----CCCCc---ChHHHHHHHH-HHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN-----SGLDR---SSADYIGMLA-TVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~-~~~~~~~~-----~~~~~---~~~~~~~~~~-~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.+++.|+++|||||||++. ..+..++.     .|++.   .+.+.+++++ ..+|.. +...|+++|+++++
T Consensus        41 ~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~~~~~~~~g~r~t~~~~l~~~~~~~~G~~~~~-l~~~l~~~g~~a~~  119 (282)
T 2bty_A           41 AFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKE-IVMNLNLHGGRAVG  119 (282)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHH-HHHHHHTTTCCEEE
T ss_pred             HHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHHHHHHHHHHhhHHHHH-HHHHHHhCCCCcee
Confidence            57899999999999999999999854 44444442     12222   2345555544 345555 56799999999988


Q ss_pred             ecccccc-----------cccc----hHHH-HHHHHHHhCCCEEEEeCC----CCCCc-cChHHHHHHHHHhcCCceEEe
Q 027731           72 QTAFRMS-----------EVAE----PYIR-RRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLK  130 (219)
Q Consensus        72 ~~~~~~~-----------~~~~----~~~~-~~~~~~l~~g~ipIv~g~----~g~~~-~~sD~~Aa~lA~~l~Ad~lii  130 (219)
                      +++.+..           ++..    .+++ +.+.++|+.|.|||++++    .|..+ +++|++|+++|.+|+||+|+|
T Consensus       120 l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~v~~~~~G~~~~~~~D~~Aa~lA~~l~Ad~lii  199 (282)
T 2bty_A          120 ICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLIL  199 (282)
T ss_dssp             EETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEECSSSCEEECCHHHHHHHHHHHHTCSEEEE
T ss_pred             cChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECCCccCCCCCEEEECHHHHHHHHHHHcCCCEEEE
Confidence            7655432           1111    1233 335578999999999984    33344 599999999999999999999


Q ss_pred             eeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHHhcCCC
Q 027731          131 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGER  201 (219)
Q Consensus       131 ltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~l~g~~  201 (219)
                      +|||||||++     |  ++|++++++|+.++       |+|.+|++|+..|.++|++ ++|+|++.|+.+ .++++++.
T Consensus       200 lTDVdGvy~~-----~--~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~  272 (282)
T 2bty_A          200 LTDVDGVLKD-----G--KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKG  272 (282)
T ss_dssp             EESSSSCEET-----T--EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSC
T ss_pred             EeCCCCeecC-----c--hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCC
Confidence            9999999996     2  89999999987653       3355599999999999998 999999999998 78999989


Q ss_pred             CceEEecC
Q 027731          202 VGTLIGGT  209 (219)
Q Consensus       202 ~GT~i~~~  209 (219)
                      .||+|.++
T Consensus       273 ~GT~i~~~  280 (282)
T 2bty_A          273 IGTMIKEL  280 (282)
T ss_dssp             SSEEECCC
T ss_pred             CceEEEeC
Confidence            99999764

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=99.97  E-value=5e-31  Score=241.14  Aligned_cols=199  Identities=23%  Similarity=0.274  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEECC-chHHHhHHH-hccCCCCcChHHHHHH---HHHHHHHHHHHHHHHhcCCCeeEecccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGG-GNIFRGASA-AGNSGLDRSSADYIGM---LATVMNAIFLQATMESIGIPTRVQTAFR   76 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~Gg-G~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~gi~a~~~~~~~   76 (219)
                      +++++|+++++.|+++|||||| |...+.+.. .....-+. +...+++   .++.+|..+++.+|+++|+++.++++.+
T Consensus        21 ~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~~~~~-~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~   99 (600)
T 3l76_A           21 AVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPNP-CRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQ   99 (600)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             HHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhhccCC-CHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhH
Confidence            6899999999999999999998 776544322 21111122 2333444   4457999999999999999999888776


Q ss_pred             cccccchH--------HH-HHHHHHHhCCCEEEEeCCC-----C------CCccChHHHHHHHHHhcCCceEEeeeccCc
Q 027731           77 MSEVAEPY--------IR-RRAVRHLEKGRVVIFAAGT-----G------NPFFTTDTAAALRCAEINAEVVLKATNVDG  136 (219)
Q Consensus        77 ~~~~~~~~--------~~-~~~~~~l~~g~ipIv~g~~-----g------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~G  136 (219)
                      ...+...+        ++ +.+.++|+.|.|||++|+.     |      ..+++||++|+.+|.+|+||+|++||||||
T Consensus       100 ~~l~~~~~~~~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdG  179 (600)
T 3l76_A          100 VGIVTEAEHSRARILEIRPDRLEHHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPG  179 (600)
T ss_dssp             TEEEEC-------CCEEEECCHHHHHTTTCEEEEECEEEC----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSS
T ss_pred             cceEEecCCCCceeccccHHHHHHHHhCCCEEEEECCeecCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCc
Confidence            53222111        11 3456789999999998752     2      235679999999999999999999999999


Q ss_pred             cccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCC
Q 027731          137 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN  211 (219)
Q Consensus       137 v~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~  211 (219)
                      ||++||+.+|++++|++++++|+.++   |.++|+++|+.+|.++|+|++|.|++++          ..||+|.++..
T Consensus       180 v~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~~~~----------~~GT~I~~~~~  247 (600)
T 3l76_A          180 ILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD----------EPGTKVVAPPV  247 (600)
T ss_dssp             CBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEETTCC----------SCCEEEECCCC
T ss_pred             CCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEECCCC----------CCCeEEecCCc
Confidence            99999999999999999999998875   8899999999999999999999999874          47999987653

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=99.97  E-value=1.7e-30  Score=229.20  Aligned_cols=198  Identities=23%  Similarity=0.333  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEEC-CchHHHh-HHHhcc--CCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVG-GGNIFRG-ASAAGN--SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM   77 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~G-gG~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~   77 (219)
                      +++++|+.+++.|+++||||| +|.+.+. +...+.  ...+.+..+.+.+.++.++..++..+|+++|+++.++++.+.
T Consensus        21 ~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~  100 (421)
T 3ab4_A           21 NVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQA  100 (421)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC--
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhc
Confidence            578999999999999999997 4665443 232221  112223344444456678888888999999999988776654


Q ss_pred             cccc-chH-------HH-HHHHHHHhCCCEEEEeCC-----C-CC----CccChHHHHHHHHHhcCCceEEeeeccCccc
Q 027731           78 SEVA-EPY-------IR-RRAVRHLEKGRVVIFAAG-----T-GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVY  138 (219)
Q Consensus        78 ~~~~-~~~-------~~-~~~~~~l~~g~ipIv~g~-----~-g~----~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~  138 (219)
                      ..+. +++       ++ +.+.++|+.|.|||++|+     . |.    .++++|++|+.+|.+|+||+|+|||||||||
T Consensus       101 ~~~t~~~~~~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~  180 (421)
T 3ab4_A          101 GVLTTERHGNARIVDVTPGRVREALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVY  180 (421)
T ss_dssp             ---------------CCHHHHHHHHHTTCEEEC------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCB
T ss_pred             eEEeccCCCCeeechhhHHHHHHHHhCCCEEEEeCCcCcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccC
Confidence            2111 111       11 345578999999999886     2 32    3469999999999999999999999999999


Q ss_pred             cCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          139 DDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       139 ~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                      ++||+.+|++++|++++++|+.++   |.+++|++|+.+|.++|+|++|.|+++|          ..||+|.++
T Consensus       181 ~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~~~----------~~GT~I~~~  244 (421)
T 3ab4_A          181 TADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSN----------DPGTLIAGS  244 (421)
T ss_dssp             SSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESSSC----------CCCEEECSC
T ss_pred             cCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCcCC----------CCCeEEEec
Confidence            999999999999999999998774   8889999999999999999999999987          479999875

>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2

Probab=99.97  E-value=1.7e-30  Score=219.80  Aligned_cols=202  Identities=17%  Similarity=0.233  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHH-HhHHHhcc-----CCCCc---ChHHHHHHHH-HHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN-----SGLDR---SSADYIGMLA-TVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~-~~~~~~~~-----~~~~~---~~~~~~~~~~-~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.+++.|+++|||||||++. ..+..++.     .|++.   .+.+.+++++ ..++. .+...|+++|++++.
T Consensus        46 ~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~G~~~~-~l~~~l~~~g~~a~~  124 (300)
T 2buf_A           46 GFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNK-DIVNLINRHGGSAIG  124 (300)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHH-HHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCEEE
Confidence            58999999999999999999999854 44444442     12222   2345555554 34554 456799999999887


Q ss_pred             ecccccc----------------------cccc----hHHHHH-HHHHHhCCCEEEEeCC----CCCCc-cChHHHHHHH
Q 027731           72 QTAFRMS----------------------EVAE----PYIRRR-AVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALR  119 (219)
Q Consensus        72 ~~~~~~~----------------------~~~~----~~~~~~-~~~~l~~g~ipIv~g~----~g~~~-~~sD~~Aa~l  119 (219)
                      +++.+..                      ++..    .+++.+ +..+|+.|.|||+++.    .|..+ +++|++|+++
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~l  204 (300)
T 2buf_A          125 LTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKV  204 (300)
T ss_dssp             EEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHTTCEEEEEEEEECTTSCEEECCHHHHHHHH
T ss_pred             ecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECHHHHHHHHHCCCEEEEcCceeCCCCCEEEECHHHHHHHH
Confidence            7655321                      1110    123434 4468999999999963    34444 5999999999


Q ss_pred             HHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCc
Q 027731          120 CAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPG  191 (219)
Q Consensus       120 A~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~  191 (219)
                      |.+|+||+|+|+|||||||++      ++++|+++++.|+.++       |+|.+|++++..+.++|++ ++|+|++.|+
T Consensus       205 A~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~  278 (300)
T 2buf_A          205 AEALKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPN  278 (300)
T ss_dssp             HHHHTCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTT
T ss_pred             HHHcCCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCc
Confidence            999999999999999999986      3689999999987654       2344488999999999998 9999999999


Q ss_pred             hH-HHHhcCCCCceEEecCC
Q 027731          192 NI-AKAIQGERVGTLIGGTW  210 (219)
Q Consensus       192 ~i-~~~l~g~~~GT~i~~~~  210 (219)
                      .+ .++|+++..||+|.++.
T Consensus       279 ~ll~~~~~~~~~GT~i~~~~  298 (300)
T 2buf_A          279 AVLLEIFTDSGVGTLISNRK  298 (300)
T ss_dssp             HHHHHHSSTTCCSEEEECCC
T ss_pred             hHHHHHhcCCCCceEEEeCC
Confidence            88 78999988999998653

>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*

Probab=99.97  E-value=4.9e-32  Score=227.76  Aligned_cols=201  Identities=15%  Similarity=0.177  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHCCC-eEEEEECCchHHHhHHHhccCCCCcChH-HHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc
Q 027731            2 AIAREVASVTRLGI-EVAIVVGGGNIFRGASAAGNSGLDRSSA-DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE   79 (219)
Q Consensus         2 ~la~~i~~l~~~g~-~vviV~GgG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~   79 (219)
                      +++++|+++++.|+ ++|||||||++++..-  +..+++.... ....+.-..++.. +..+|+++|+++..+.+.+.. 
T Consensus        51 ~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l--~~~~~~~~~~~~~~~vt~g~l~~~-l~~~l~~~G~~a~~l~~~~~~-  126 (286)
T 3d40_A           51 RFARNFARLAETYRGRMVLISGGGAFGHGAI--RDHDSTHAFSLAGLTEATFEVKKR-WAEKLRGIGVDAFPLQLAAMC-  126 (286)
T ss_dssp             HHHHHHHHHHHHTTTSEEEEECCCCC--------------CCTTHHHHHHHHHHHHH-HHHHHHHTTCCEEECCGGGTE-
T ss_pred             HHHHHHHHHHHcCCCeEEEEECCHHHHHHHH--HHcCCCcccchhcchhhHHHHHHH-HHHHHHHcCCcEEEEEeecCC-
Confidence            58999999999998 6999999999876432  2223332211 1111111234443 467899999998876554321 


Q ss_pred             c----cchHHHHHHHHHHhCCCEEEEeCC-----CCC-CccChHHHHHHHHHh-cCCceEEeeeccCccccCCCCCCCCC
Q 027731           80 V----AEPYIRRRAVRHLEKGRVVIFAAG-----TGN-PFFTTDTAAALRCAE-INAEVVLKATNVDGVYDDNPRRNPNA  148 (219)
Q Consensus        80 ~----~~~~~~~~~~~~l~~g~ipIv~g~-----~g~-~~~~sD~~Aa~lA~~-l~Ad~liiltDV~Gv~~~dP~~~~~a  148 (219)
                      +    ......+.+..+|+.|.|||++|+     .+. +++++|++|+++|.+ |+||+|+|+|||||||++||+   ++
T Consensus       127 ~t~dg~~~~~~~~i~~lL~~g~IpVi~gd~~~~~~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~---~a  203 (286)
T 3d40_A          127 TLRNGIPQLRSEVLRDVLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG---GD  203 (286)
T ss_dssp             EEETTEEEECCSHHHHHHHTTCEEEEECEEEEBTTSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC------C
T ss_pred             cccCCeEEehHHHHHHHHHCcCEEEEcCCeEEcCCCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC---CC
Confidence            1    000001245678999999999983     222 569999999999999 999999999999999999997   78


Q ss_pred             cccccccHHHHhhC-------------CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcC-----CCC-ceEEecC
Q 027731          149 RLLDTLTYQEVTSK-------------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQG-----ERV-GTLIGGT  209 (219)
Q Consensus       149 ~~i~~i~~~e~~~~-------------g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g-----~~~-GT~i~~~  209 (219)
                      ++|+++++.|+.++             |+|..|++|+..|.++|++++|+|+++|+.+.++|++     +++ ||.|..+
T Consensus       204 ~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~  283 (286)
T 3d40_A          204 TILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT  283 (286)
T ss_dssp             EECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC-
T ss_pred             cCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeec
Confidence            99999998653221             2334488999999999999999999999999999999     776 9999764

>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*

Probab=99.97  E-value=9.9e-30  Score=210.83  Aligned_cols=198  Identities=19%  Similarity=0.194  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHHCCC-eEEEEECCchHHHh-HHHhcc-----CCCCcChHHHH----HHHHHHHHHHHHHHHHHhcCCCee
Q 027731            2 AIAREVASVTRLGI-EVAIVVGGGNIFRG-ASAAGN-----SGLDRSSADYI----GMLATVMNAIFLQATMESIGIPTR   70 (219)
Q Consensus         2 ~la~~i~~l~~~g~-~vviV~GgG~~~~~-~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~gi~a~   70 (219)
                      +++++|+++++.|. ++|||||||++.+. +..++.     +|++.+..+.+    +++++.+|..+++ .|+++|+++.
T Consensus        22 ~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~~~glr~t~~~~l~~~~~~l~~~~n~~l~~-~l~~~G~~a~  100 (258)
T 1gs5_A           22 RLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLA-WAKKHQIAAV  100 (258)
T ss_dssp             HHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHHHHHHHHHTHHHHHHHH-HHHHTTCCEE
T ss_pred             HHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcceeCCEeeCCHHHHHHHHHHHhccchHHHHH-HHHHCCCCeE
Confidence            57889988887665 58999999986543 333331     34443444444    3456788988875 7799999999


Q ss_pred             Eeccccccccc------------ch-HHH-HHHHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcCCceEEee
Q 027731           71 VQTAFRMSEVA------------EP-YIR-RRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKA  131 (219)
Q Consensus        71 ~~~~~~~~~~~------------~~-~~~-~~~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~liil  131 (219)
                      ++++.+...+.            +. .++ +.+..+|+.|.|||++|+    .|. .++++|++|+++|.+|+|| |+||
T Consensus       101 ~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~Aa~lA~~l~Ad-li~l  179 (258)
T 1gs5_A          101 GLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGAD-LILL  179 (258)
T ss_dssp             EECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCE-EEEE
T ss_pred             EEeecCCCEEEEEEcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCcCCCCCcEEEecHHHHHHHHHHHhCCc-EEEE
Confidence            88776642110            00 112 345678999999999986    333 4689999999999999999 9999


Q ss_pred             eccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHH-hCCCcEEEEecCCCchHHHHhcCCCCc
Q 027731          132 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQ-ENNIPVVVFNLNQPGNIAKAIQGERVG  203 (219)
Q Consensus       132 tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~-~~gi~v~I~~g~~~~~i~~~l~g~~~G  203 (219)
                      |||||||++|      +++|++++++|+.++       |+|..|++++..++ +.+++++|+|+++|+.+.++|+|+..|
T Consensus       180 tdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~G  253 (258)
T 1gs5_A          180 SDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMG  253 (258)
T ss_dssp             ESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSS
T ss_pred             eCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCc
Confidence            9999999975      589999999987764       23445778877665 468899999999999999999999999


Q ss_pred             eEEe
Q 027731          204 TLIG  207 (219)
Q Consensus       204 T~i~  207 (219)
                      |+|.
T Consensus       254 T~i~  257 (258)
T 1gs5_A          254 TRIL  257 (258)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9996

>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*

Probab=99.97  E-value=1.1e-29  Score=215.78  Aligned_cols=200  Identities=15%  Similarity=0.160  Sum_probs=144.5

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhcc---CCCCcChHHHHHH-----HHHHHHHHHHHHHHHhcCCCe---
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN---SGLDRSSADYIGM-----LATVMNAIFLQATMESIGIPT---   69 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~l~~~~l~~~gi~a---   69 (219)
                      +++++|+.+++.|+++|||||||++.+. +..++.   +..+..+.+...+     +...++.. +...|.+.|++.   
T Consensus        30 ~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~~~~~~~~~~~~~l~~~~a~~~G~l~~~i~~a-l~~~l~~~g~~~~v~  108 (310)
T 2we5_A           30 QTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTCVAMTQGSIGYWLSNA-LNQELNKAGIKKQVA  108 (310)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTCSSSSCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHTTCCCCEE
T ss_pred             HHHHHHHHHHHCCCeEEEEECCcHHHhHHHHHcCCCCCCCCCHHHHHHHHHHhhhHHHHHHHHH-HHHHHHhcCCchhhH
Confidence            5899999999999999999999987654 333331   1123445555543     22223322 356687788763   


Q ss_pred             ---------------------eEe--ccccc-----ccc------cchH------------HHHH-HHHHHhCCCEEEEe
Q 027731           70 ---------------------RVQ--TAFRM-----SEV------AEPY------------IRRR-AVRHLEKGRVVIFA  102 (219)
Q Consensus        70 ---------------------~~~--~~~~~-----~~~------~~~~------------~~~~-~~~~l~~g~ipIv~  102 (219)
                                           +++  +..+.     ..+      ...|            ++.+ +..+|+.|.|||++
T Consensus       109 ~~l~~~~v~~~d~~f~~~~~~vg~~~t~~da~~l~~~~~~~~~~~~~~~~~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~  188 (310)
T 2we5_A          109 TVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWRKVVPSPKPIDIHEAETINTLIKNDIITISC  188 (310)
T ss_dssp             EBCCEEEECTTCHHHHSCCEEEEEEECHHHHHHHHTTTCCEEECTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECC
T ss_pred             hhhhhhcccccchhhcccCceeEEeccHHHHHHHHhccccccccCCcceeeccCCcccceeehHHHHHHHHHCCCEEEEE
Confidence                                 111  11110     001      0001            2333 45789999999999


Q ss_pred             CCCC-----------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC--------C
Q 027731          103 AGTG-----------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------D  163 (219)
Q Consensus       103 g~~g-----------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g  163 (219)
                      |+.|           ..++|+|++|+.+|.+|+||+|+|+|||||||+ || .+|++++|+++++.|+.++        |
T Consensus       189 Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~i~~i~~~e~~~~~~~g~~~~G  266 (310)
T 2we5_A          189 GGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQLTNVTVAELEEYKQAGHFAPG  266 (310)
T ss_dssp             GGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEECCEEEHHHHHHHHHTTCSCTT
T ss_pred             CCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeECCEEcHHHHHHHhhCCCCCCC
Confidence            5422           245899999999999999999999999999999 78 5889999999999987754        4


Q ss_pred             CCCchHHHHHHHHhCCC--cEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          164 LSVMDMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       164 ~~~~k~~aa~~a~~~gi--~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      +|..|++||..+.++|+  +++|++   ++.+.++|+|+..||+|.
T Consensus       267 gM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~GT~i~  309 (310)
T 2we5_A          267 SMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIVGTVVT  309 (310)
T ss_dssp             TTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCCSEEEE
T ss_pred             ChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCCCeEEe
Confidence            56679999999999999  799996   566888999988999996

>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=99.97  E-value=3.7e-29  Score=212.96  Aligned_cols=200  Identities=18%  Similarity=0.171  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhcc-CC-CCcChHHHHHHHH-----HHHHHHHHHHHHHhcCCCe----
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-SG-LDRSSADYIGMLA-----TVMNAIFLQATMESIGIPT----   69 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~-~~-~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~gi~a----   69 (219)
                      +++++|+.|++.|+++|||||||++.+. +..++. .. .+..+.+.+++.+     ..++. .+...|.++|+++    
T Consensus        34 ~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~~~~~t~~~~l~~~~~~~~G~i~~~l~~-~l~~~l~~~g~~a~~~~  112 (316)
T 2e9y_A           34 RASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPERPRQPLYIATAMTQAWIGLLLKH-SLEEELRRRGLNVLVPV  112 (316)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHTSCTTSCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCCCCCCE
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCCCCCCCCHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhcCCCccccc
Confidence            5899999999999999999999986653 334431 11 1234566655422     23454 4567888999986    


Q ss_pred             ----eEecccccc---------cc------------------cc-----------h----HHHHH-HHHHHhCCCEEEEe
Q 027731           70 ----RVQTAFRMS---------EV------------------AE-----------P----YIRRR-AVRHLEKGRVVIFA  102 (219)
Q Consensus        70 ----~~~~~~~~~---------~~------------------~~-----------~----~~~~~-~~~~l~~g~ipIv~  102 (219)
                          +.+++.+..         .+                  .+           +    .++.+ +..+|+.|.|||++
T Consensus       113 v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~  192 (316)
T 2e9y_A          113 VISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVAL  192 (316)
T ss_dssp             ECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETTHHHHHHHHHHCSEEEEC
T ss_pred             eeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeehHHHHHHHHHCCCEEEEE
Confidence                334333310         00                  00           0    02333 45689999999998


Q ss_pred             CCCCC--------------CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC------
Q 027731          103 AGTGN--------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------  162 (219)
Q Consensus       103 g~~g~--------------~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------  162 (219)
                      |+.|.              .++|+|++|+.+|.+|+||+|+|+|||||||+ ||+ +|++++|++++++|+.++      
T Consensus       193 g~~g~pv~~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~a~~i~~i~~~e~~~~~~~g~~  270 (316)
T 2e9y_A          193 GGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REGERWLRRAAASELKKYLREGHF  270 (316)
T ss_dssp             GGGCEEEEECTTSCEEECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STTCEECSEEEHHHHHHHHHTTCS
T ss_pred             CCCCCCeeECCCCCeecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCCCcCCcEEcHHHHHHHHhcCCC
Confidence            54221              23599999999999999999999999999999 784 789999999999987654      


Q ss_pred             --CCCCchHHHHHHHHhCCC-cEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          163 --DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       163 --g~~~~k~~aa~~a~~~gi-~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                        |+|..|+++|..+.++|+ +++|+|   ++.+.++|+| ..||+|.+
T Consensus       271 ~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~l~g-~~GT~i~~  315 (316)
T 2e9y_A          271 PPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQVLSL-QAGTVVML  315 (316)
T ss_dssp             CTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHHHTT-SSSEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHHHcC-CCCeEEec
Confidence              345669999999999999 799987   5668899998 78999974

>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1

Probab=99.96  E-value=5e-28  Score=205.73  Aligned_cols=200  Identities=18%  Similarity=0.246  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHH-hHHHhcc---C-CCCcChHHHHHHH-----HHHHHHHHHHHHHHhcCCCe--
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFR-GASAAGN---S-GLDRSSADYIGML-----ATVMNAIFLQATMESIGIPT--   69 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~-~~~~~~~---~-~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~gi~a--   69 (219)
                      +++++|+.+++.|+++|||||||+... .+..++.   + ..+..+.+...+.     ...++ .++...|.++|+++  
T Consensus        32 ~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~~~~~~~~~~l~~~~a~~~G~i~~~l~-~~l~~~l~~~gi~a~~  110 (314)
T 1e19_A           32 KTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQ-QALKNELRKRGMEKKV  110 (314)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCCCCE
T ss_pred             HHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCccccCCCChhHHHHHHHHHhhHHHHHHH-HHHHHHHHHcCCchhh
Confidence            589999999999999999999987543 2222221   0 1344455554332     22343 33467889999986  


Q ss_pred             ------eEecccccc---------c-cc-----------------c---h------------HHHHH-HHHHHhCCCEEE
Q 027731           70 ------RVQTAFRMS---------E-VA-----------------E---P------------YIRRR-AVRHLEKGRVVI  100 (219)
Q Consensus        70 ------~~~~~~~~~---------~-~~-----------------~---~------------~~~~~-~~~~l~~g~ipI  100 (219)
                            +.+++.+..         . +.                 +   .            .++.+ +..+|+.|.|||
T Consensus       111 ~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV  190 (314)
T 1e19_A          111 VTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVI  190 (314)
T ss_dssp             EEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEE
T ss_pred             hhhheeeeecccchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeehHHHHHHHHHCCCEEE
Confidence                  233333210         0 00                 0   0            01233 457899999988


Q ss_pred             EeCC---------C---C-CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-----
Q 027731          101 FAAG---------T---G-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----  162 (219)
Q Consensus       101 v~g~---------~---g-~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----  162 (219)
                      ++|+         +   + ..++|+|++|+++|.+|+||+|+|+|||||||++||  +|++++|++++++|+.++     
T Consensus       191 ~~Gg~giPi~~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a~~i~~i~~~e~~~~~~~g~  268 (314)
T 1e19_A          191 ASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEELRKYYEEGH  268 (314)
T ss_dssp             CSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHHHHHHHTTC
T ss_pred             EeCCCccCeEECCCCcceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCCeECCEECHHHHHHHHhCCC
Confidence            8742         2   1 135899999999999999999999999999999998  588999999999987764     


Q ss_pred             ---CCCCchHHHHHH-HHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          163 ---DLSVMDMTAITL-CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       163 ---g~~~~k~~aa~~-a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                         |+|..|+++|.. +.+.+++++|+|.   +.+.++|+| +.||+|.+
T Consensus       269 ~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~~g-~~GT~i~~  314 (314)
T 1e19_A          269 FKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEG-KTGTQVLP  314 (314)
T ss_dssp             SCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHHTT-SSSEEEEC
T ss_pred             cCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHHcC-CCCeEEcC
Confidence               345568899866 5556778999985   468899988 48999974

>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}

Probab=99.96  E-value=7.1e-28  Score=201.08  Aligned_cols=187  Identities=21%  Similarity=0.287  Sum_probs=140.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-----CCCCcC---hHHHHHH-HHHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDRS---SADYIGM-LATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-----~~~~~~---~~~~~~~-~~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.|++.|+++|||||||+ +..++..++.     .|++.+   +.+.+++ ++..+|..+ .+.|+++|+++..
T Consensus        54 ~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg~~~~~~~G~Rvtd~~~l~~v~~~l~G~ln~~i-~~~L~~~G~~a~~  132 (279)
T 3l86_A           54 DFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMVLVSHALLDLVGKNL-QEKLRQAGVSCQQ  132 (279)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHHHHHHHHHHTTHHHH-HHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcCCCCccCCCcccCcHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCEEE
Confidence            589999999999999999999886 5566666652     222222   2333444 344566665 5799999999998


Q ss_pred             eccccccccc----c--hH--------HH-HHHHHHHhCCCEEEEeCC----CCCCc-cChHHHHHHHHHhcCCceEEee
Q 027731           72 QTAFRMSEVA----E--PY--------IR-RRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKA  131 (219)
Q Consensus        72 ~~~~~~~~~~----~--~~--------~~-~~~~~~l~~g~ipIv~g~----~g~~~-~~sD~~Aa~lA~~l~Ad~liil  131 (219)
                      +++.+...+.    +  .|        ++ +.+..+|+.|.|||++|.    .|..+ +++|++|+++|.+|+||+|+|+
T Consensus       133 l~g~dg~llta~~~~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~v~~~~~G~~~~i~~D~~Aa~lA~~L~Ad~Liil  212 (279)
T 3l86_A          133 LKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGDMLNINADYLATAVAVALAADKLILM  212 (279)
T ss_dssp             CSGGGGGTEEEEESCHHHHBSBEEEEEECHHHHHHHHHTTCEEEEESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEE
T ss_pred             EecCcCCEEEeeccCccccCcccccchhhHHHHHHHHhCCcEEEECCcEECCCCCEeecCHHHHHHHHHHHcCCCEEEEE
Confidence            7766543221    1  11        23 335578999999999982    33334 6999999999999999999999


Q ss_pred             eccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchHHHHhcCCCCc
Q 027731          132 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVG  203 (219)
Q Consensus       132 tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i~~~l~g~~~G  203 (219)
                      |||||||+       ++++|++++++|+.++       |+|.+|++|+..|.+.|++ ++|+|++..            |
T Consensus       213 TDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~------------G  273 (279)
T 3l86_A          213 TNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLT------------G  273 (279)
T ss_dssp             CSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEESSSSC------------S
T ss_pred             eCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEeccCCC------------C
Confidence            99999995       3689999999876653       4556699999999999998 999998742            9


Q ss_pred             eEEec
Q 027731          204 TLIGG  208 (219)
Q Consensus       204 T~i~~  208 (219)
                      |+|..
T Consensus       274 T~i~~  278 (279)
T 3l86_A          274 TLITA  278 (279)
T ss_dssp             EEEEC
T ss_pred             eEEec
Confidence            99975

>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*

Probab=99.96  E-value=6.1e-28  Score=203.74  Aligned_cols=200  Identities=14%  Similarity=0.200  Sum_probs=147.8

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhcc-----CCCCcC---hHHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRS---SADYIGMLATVMNAIFLQATMESIGIPTRVQ   72 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~   72 (219)
                      +++++|+.+++.|.++|||||||++.+. +.+++.     .|++.+   +.+.+.++...+|..++ +.|.+.|++++++
T Consensus        66 ~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~~~~G~RvTd~~~l~vv~m~~~~vn~~lv-~~L~~~G~~Av~l  144 (307)
T 3zzh_A           66 ELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLV-TALEQLGVRARPI  144 (307)
T ss_dssp             HHHHHHHHHHHBTCCEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHHHHHHHHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHcCCCccccCCeecCCHHHHHHHHHHHHHHHHHHH-HHHHhCCCCeeEE
Confidence            6899999999999999999999997654 344432     244333   34555565567888775 6899999999988


Q ss_pred             ccccc--c-----ccc---c-hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEEeeeccC
Q 027731           73 TAFRM--S-----EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVD  135 (219)
Q Consensus        73 ~~~~~--~-----~~~---~-~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~liiltDV~  135 (219)
                      ++-..  .     ++.   + ..++ +.+..+|+.|.|||++|+    .| ..++++|++|+++|.+|+||+|+|+||||
T Consensus       145 ~gg~~~a~~~~~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~~g~~~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~  224 (307)
T 3zzh_A          145 TSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKG  224 (307)
T ss_dssp             CSSSEEEEESCHHHHBSBEEEEEECCHHHHHHHHHTCEEEECCCEECTTCBEEBCCHHHHHHHHHHHHCCSEEEEECSSC
T ss_pred             cCCcEEEEecCccccCccccccccCHHHHHHHHHCCCEEEEeCCeECCCCcEEecCHHHHHHHHHHhCCCCEEEEEeCCc
Confidence            75110  0     000   0 0123 345678999999999985    23 24589999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcccccccHHH-HhhC-------CCCCchHHHHHHHHhC---CCcEEEEecCCCchH-HHHhcCCCCc
Q 027731          136 GVYDDNPRRNPNARLLDTLTYQE-VTSK-------DLSVMDMTAITLCQEN---NIPVVVFNLNQPGNI-AKAIQGERVG  203 (219)
Q Consensus       136 Gv~~~dP~~~~~a~~i~~i~~~e-~~~~-------g~~~~k~~aa~~a~~~---gi~v~I~~g~~~~~i-~~~l~g~~~G  203 (219)
                      |||++     |++++|+++++.| +.++       |+|..|+++++.|.+.   +.+++|++   ++.+ .++++++++|
T Consensus       225 GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g~G  296 (307)
T 3zzh_A          225 GIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAG  296 (307)
T ss_dssp             SCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCCCS
T ss_pred             ceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCCCc
Confidence            99986     4689999999865 3332       3456688876666554   78899998   6776 5788999999


Q ss_pred             eEEecCC
Q 027731          204 TLIGGTW  210 (219)
Q Consensus       204 T~i~~~~  210 (219)
                      |+|.+..
T Consensus       297 T~I~~~~  303 (307)
T 3zzh_A          297 TMIRRGY  303 (307)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9998753

>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*

Probab=99.95  E-value=6.8e-28  Score=214.59  Aligned_cols=201  Identities=19%  Similarity=0.225  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHH-hHHHhcc-----CCCCc---ChHHHHHHHHHHHHHHHHHHHHHhcCCCe---
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFR-GASAAGN-----SGLDR---SSADYIGMLATVMNAIFLQATMESIGIPT---   69 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~-~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~gi~a---   69 (219)
                      +++++|+.+++.|+++|||||||++.+ .+..++.     .|++.   .+.+.+++.+..++..+ .+.|+ +|+++   
T Consensus        62 ~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~l~~~~~~~G~~~~~l-~~~l~-~g~~~~~~  139 (456)
T 3d2m_A           62 KLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRF-EAALC-GSVSGFAR  139 (456)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTTCCCCCGGGCCCBCHHHHHHHHHHHHHHHHHH-HHHHH-TC------
T ss_pred             HHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHCCCCCEeeCCeecCCHHHHHHHHHHHhHHHHHH-HHHHh-cccccCCC
Confidence            589999999999999999999988643 3333331     12222   23444445445666665 45787 88887   


Q ss_pred             -eEecccccc-------------ccc---c-hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCC
Q 027731           70 -RVQTAFRMS-------------EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINA  125 (219)
Q Consensus        70 -~~~~~~~~~-------------~~~---~-~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~A  125 (219)
                       +.+++.+..             |+.   . .+++ +.+..+|+.|.|||++++    .| ..++|+|++|+.+|.+|+|
T Consensus       140 ~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipIi~~~~~~~~g~~~~~~~D~~Aa~lA~~l~A  219 (456)
T 3d2m_A          140 APSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQA  219 (456)
T ss_dssp             --CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTC
T ss_pred             ccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEEECCcccCCCCCEEEECHHHHHHHHHHHcCC
Confidence             444433321             111   0 1233 335579999999999974    23 3458999999999999999


Q ss_pred             ceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-----CCCCchHHHHHHHHhCCCc-EEEEecCCCchH-HHHhc
Q 027731          126 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQ  198 (219)
Q Consensus       126 d~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i-~~~l~  198 (219)
                      |+|+|+|||||||++      ++++|+++++.|+.++     |+|.+|++||..|.+.|++ ++|+|++.|+.+ .++++
T Consensus       220 d~li~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~  293 (456)
T 3d2m_A          220 EKLVYLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFT  293 (456)
T ss_dssp             SEEEEEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHC
T ss_pred             CEEEEEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHh
Confidence            999999999999986      4789999999887764     4456699999999999996 999999999998 67888


Q ss_pred             CCCCceEEecCC
Q 027731          199 GERVGTLIGGTW  210 (219)
Q Consensus       199 g~~~GT~i~~~~  210 (219)
                      ++..||+|.++.
T Consensus       294 ~~~~GT~i~~~~  305 (456)
T 3d2m_A          294 RNGIGTSIAKEA  305 (456)
T ss_dssp             SSCSSEEEECCC
T ss_pred             hcCCceeeeccc
Confidence            888999998754

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=99.95  E-value=6.2e-27  Score=210.03  Aligned_cols=159  Identities=23%  Similarity=0.297  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc-----cc------hH--HHHHHHH-HHhCCCEEEEeCCC---
Q 027731           43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AE------PY--IRRRAVR-HLEKGRVVIFAAGT---  105 (219)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~-----~~------~~--~~~~~~~-~l~~g~ipIv~g~~---  105 (219)
                      .+.+.+.++.+++.+++.+|+++|+++.++++.+.+.+     .+      .+  .+..+.+ +++.|.|||++||.   
T Consensus       140 ~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~  219 (510)
T 2cdq_A          140 RDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKG  219 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccC
Confidence            45556677889999999999999999999888765211     11      11  2234444 67899999998852   


Q ss_pred             ---C----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHH
Q 027731          106 ---G----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLC  175 (219)
Q Consensus       106 ---g----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a  175 (219)
                         |    ..+++||++|+.+|.+|+||++++||||||||++||+.+|++++|++++|+|+.++   |.++||++|+.+|
T Consensus       220 ~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a~~~a  299 (510)
T 2cdq_A          220 WKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPA  299 (510)
T ss_dssp             TTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred             CCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHHHHHH
Confidence               2    13567999999999999999999999999999999999999999999999998775   8899999999999


Q ss_pred             HhCCCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          176 QENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       176 ~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      .++|||++|.|+++|+         ..||+|.++.
T Consensus       300 ~~~gIpv~I~n~~~p~---------~~GT~I~~~~  325 (510)
T 2cdq_A          300 REGEIPVRVKNSYNPK---------APGTIITKTR  325 (510)
T ss_dssp             HHHTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred             HHCCCeEEEEccCcCC---------CCCeEEeccc
Confidence            9999999999999986         5799998753

>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*

Probab=99.94  E-value=4e-26  Score=201.83  Aligned_cols=199  Identities=14%  Similarity=0.193  Sum_probs=147.8

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhcc-----CCCCcCh---HHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSS---ADYIGMLATVMNAIFLQATMESIGIPTRVQ   72 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~   72 (219)
                      +++++|+.|+..|.++|||||||++.+. +..++.     .|++.+.   .+.+.++...+|..++ +.|.++|++++++
T Consensus        66 ~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~tl~vv~mv~~~vn~~lv-~~L~~~G~~Avgl  144 (464)
T 4ab7_A           66 ELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLV-TALEQLGVRARPI  144 (464)
T ss_dssp             HHHHHHHHHHHTTCCCEEEECCCHHHHHHHHHTTCCCCEETTEECBCHHHHHHHHHHHHHHHHHHH-HHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHHHHHHHHHHHHHHHHHH-HHHHhCCCCeEEE
Confidence            6899999999999999999999996654 344442     3444333   4556666667887765 6899999999988


Q ss_pred             cccc--cc-----ccc---c-hHHH-HHHHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcCCceEEeeeccC
Q 027731           73 TAFR--MS-----EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVD  135 (219)
Q Consensus        73 ~~~~--~~-----~~~---~-~~~~-~~~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~liiltDV~  135 (219)
                      ++--  ..     ++.   + ..++ +.+..+|+.|.|||++|+    .|. .++++|++|+.+|.+|+||+|+|+||||
T Consensus       145 sgg~~~a~~~~~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~~g~~~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~  224 (464)
T 4ab7_A          145 TSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKG  224 (464)
T ss_dssp             CSSSEEEEESCTTTTBSBEEEEEECCHHHHHHHHTTCEEEEESEEECTTCBEEECCHHHHHHHHHHHHCCSEEEEEESSC
T ss_pred             CCCcEEEEecCccccCCcCcccccCHHHHHHHHHCCcEEEEcCCcCCCCCCEEEecHHHHHHHHHHHcCCCEEEEEeccc
Confidence            7511  00     111   0 0123 345679999999999984    333 4589999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcccccccHHH-HhhC-------CCCCchHHHHHHHHhC---CCcEEEEecCCCchH-HHHhcCCCCc
Q 027731          136 GVYDDNPRRNPNARLLDTLTYQE-VTSK-------DLSVMDMTAITLCQEN---NIPVVVFNLNQPGNI-AKAIQGERVG  203 (219)
Q Consensus       136 Gv~~~dP~~~~~a~~i~~i~~~e-~~~~-------g~~~~k~~aa~~a~~~---gi~v~I~~g~~~~~i-~~~l~g~~~G  203 (219)
                      |||++     |++++|++++..| +.++       |+|.+|+++++.|.+.   +.+++|++   ++.+ .++++++++|
T Consensus       225 GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~---~~~ll~eLft~~g~G  296 (464)
T 4ab7_A          225 GIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAG  296 (464)
T ss_dssp             SEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSCTTCEEEEEE---STTHHHHTTSSSTTS
T ss_pred             ccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcccCcEEEEec---ChHHHHHHhcCCCCc
Confidence            99986     3679999999865 3322       3456688877777664   77899998   5555 5788899999


Q ss_pred             eEEecC
Q 027731          204 TLIGGT  209 (219)
Q Consensus       204 T~i~~~  209 (219)
                      |+|.++
T Consensus       297 T~I~~~  302 (464)
T 4ab7_A          297 TMIRRG  302 (464)
T ss_dssp             EEEECC
T ss_pred             eEEecC
Confidence            999976

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=99.94  E-value=4.3e-26  Score=202.13  Aligned_cols=159  Identities=19%  Similarity=0.229  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccc----ccc--chH---HH---HHHHHHHhCCCEEEEeCCCC----
Q 027731           43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS----EVA--EPY---IR---RRAVRHLEKGRVVIFAAGTG----  106 (219)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~----~~~--~~~---~~---~~~~~~l~~g~ipIv~g~~g----  106 (219)
                      .+.+.+.++.++..+++.+|+++|+++.++++.+..    ++.  +++   ..   .++++.|..+.|||++|+.+    
T Consensus       111 ~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~~~~~~~~~~~~~~~~~~~l~~l~~~~IpVv~Gf~g~~~~  190 (449)
T 2j0w_A          111 TDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVITQGFIGSENK  190 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCTTSCCBCHHHHHHHHHHHTHHHHHHSEEEEESSEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCCCCCccccHhHhHHHHHHHHHHHhcCCEEEEeCCeeeCCC
Confidence            355556678899999999999999999988877651    111  111   11   12333233445999998622    


Q ss_pred             -----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhC
Q 027731          107 -----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN  178 (219)
Q Consensus       107 -----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~  178 (219)
                           ..+++||++|+.+|.+|+||+|++||||||||++||+.+|++++|++++++|+.++   |.+++|++|+.+|.++
T Consensus       191 g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a~~~  270 (449)
T 2j0w_A          191 GRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRS  270 (449)
T ss_dssp             SCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHH
T ss_pred             CCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHHHHC
Confidence                 23577999999999999999999999999999999999999999999999998775   7788899999999999


Q ss_pred             CCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          179 NIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       179 gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      |+|++|.|+++|+         ..||+|.++.
T Consensus       271 gi~v~I~~~~~p~---------~~GT~I~~~~  293 (449)
T 2j0w_A          271 DIPVFVGSSKDPR---------AGGTLVCNKT  293 (449)
T ss_dssp             TCCEEEEESSCTT---------SCCEEEESCC
T ss_pred             CCeEEEEECCCCC---------CCeeEEeccc
Confidence            9999999999886         5799998763

>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*

Probab=99.94  E-value=4e-26  Score=202.07  Aligned_cols=201  Identities=17%  Similarity=0.215  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhcc-----CCCCc---ChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDR---SSADYIGMLATVMNAIFLQATMESIGIPTRVQ   72 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~   72 (219)
                      +++++|+.+++.|.++|||||||++.+. +..++.     .|++.   ++.+.+.++...+|..+++ +|.+.|++++++
T Consensus        76 ~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~~l~vv~~~lg~vn~~lv~-aL~~~G~~Av~l  154 (460)
T 3s6g_A           76 GLASALAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAMPIIRDTLTQANLALVD-AIRDAGGRAAAV  154 (460)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHSCCCCCCSSSCCBCTTTHHHHHHHHHHHHHHHHH-HHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceEE
Confidence            6899999999999999999999996654 344442     24432   3455555655578888774 899999999988


Q ss_pred             ccccc--c-----ccc---c-hHHH-HHHHHHHhCCCEEEEeCC----CCC-CccChHHHHHHHHHhcCCceEEeeeccC
Q 027731           73 TAFRM--S-----EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVD  135 (219)
Q Consensus        73 ~~~~~--~-----~~~---~-~~~~-~~~~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~lA~~l~Ad~liiltDV~  135 (219)
                      ++...  .     ++.   + ..++ +.+..+|+.|.|||++++    .|. .++++|++|+.+|.+|+||+|+|+||||
T Consensus       155 sg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~g~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~  234 (460)
T 3s6g_A          155 PRGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTGTG  234 (460)
T ss_dssp             CSSSEEEEESCTTTTBSEEEEEEECCHHHHHHHHTTCEEEEECEEECTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSC
T ss_pred             ecCeEEEEEecCcccCccCcceEEcHHHHHHHHHCCcEEEEECceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            76211  1     110   0 0123 345679999999999964    233 3589999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcccccccHH-HHhhC-------CCCCchHHHHHHHHhCCCcEEEEecCCCchHH-HHhcCCCCceEE
Q 027731          136 GVYDDNPRRNPNARLLDTLTYQ-EVTSK-------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLI  206 (219)
Q Consensus       136 Gv~~~dP~~~~~a~~i~~i~~~-e~~~~-------g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~-~~l~g~~~GT~i  206 (219)
                      |||++      ++++|++++.. |+..+       |+|..|++++..+.+.+.++++++++.|+.+. ++++++++||+|
T Consensus       235 Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i  308 (460)
T 3s6g_A          235 GLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLI  308 (460)
T ss_dssp             SCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEE
T ss_pred             cccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEE
Confidence            99985      46899999985 54432       45566999999888743369999999999985 688999999999


Q ss_pred             ecC
Q 027731          207 GGT  209 (219)
Q Consensus       207 ~~~  209 (219)
                      .+.
T Consensus       309 ~~~  311 (460)
T 3s6g_A          309 RRG  311 (460)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            876

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=99.94  E-value=1.1e-25  Score=198.86  Aligned_cols=154  Identities=19%  Similarity=0.250  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccc---h---HHHHHHHHHHhCCCEEEEeCCCC---------C
Q 027731           43 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE---P---YIRRRAVRHLEKGRVVIFAAGTG---------N  107 (219)
Q Consensus        43 ~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~---~---~~~~~~~~~l~~g~ipIv~g~~g---------~  107 (219)
                      .|.+-..++++++.|++.+|.     +.++++.+...+..   +   ...+++.++|+.|.|||++||.|         .
T Consensus       109 ~D~lls~GE~lS~~lla~~l~-----a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~v~Vv~Gf~g~~~~g~~~tl  183 (446)
T 3tvi_A          109 SDYAASRGEYLNGVILAKYLN-----AEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKTF  183 (446)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT-----CEECCGGGTCBBCC--CBCHHHHHHHHHHHTTTCSSEECCCSEEECTTSCEEEC
T ss_pred             HHHHHHhHHHHHHHHHHHHhc-----ceeECHHHheeeCCCCceehHhhHHHHHHHHhcCCeEEeeCceecCCCCCeEEE
Confidence            455556778999999988864     44445444332211   1   12245667899999999998621         2


Q ss_pred             CccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEEE
Q 027731          108 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVV  184 (219)
Q Consensus       108 ~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~I  184 (219)
                      .+++||++|+.+|.+|+||++++||||||||++||+.+|++++|++++|+|+.++   |.++||++|+++|.++|||++|
T Consensus       184 ~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i  263 (446)
T 3tvi_A          184 SRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINI  263 (446)
T ss_dssp             SSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEE
T ss_pred             ccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEE
Confidence            4578999999999999999999999999999999999999999999999998875   7789999999999999999999


Q ss_pred             EecCCCchHHHHhcCCCCceEEecCC
Q 027731          185 FNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       185 ~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      .|+++|+         ..||+|.++.
T Consensus       264 ~~~~~p~---------~~GT~i~~~~  280 (446)
T 3tvi_A          264 KNTNKPS---------DPGTLILSDT  280 (446)
T ss_dssp             EETTBTT---------SCCEEEECTT
T ss_pred             ecCCCCC---------CCCEEEecCC
Confidence            9999886         5799998764

>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}

Probab=99.93  E-value=5.5e-26  Score=190.90  Aligned_cols=201  Identities=16%  Similarity=0.206  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc--CCCCcChHH-----HHHHHHHHHHHHHHHHHHHhcCCCeeEec
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN--SGLDRSSAD-----YIGMLATVMNAIFLQATMESIGIPTRVQT   73 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~gi~a~~~~   73 (219)
                      ..|++|+++.+.||++||+||.|+ ++........  ...+..+++     ..++++.+++..| ...|...|++....+
T Consensus        35 ~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~~~~~~~pld~~~A~sqG~igy~l~~al-~~~l~~~g~~~~v~t  113 (317)
T 3kzf_A           35 IAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAM-DNVFCANNEPANCVT  113 (317)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTTSSSCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCCCCEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCccccCchhhHHHHHHHHHHH-HHHHHhcCCCCceeE
Confidence            458899999999999999999976 3222211110  112233443     3456666664443 567888887543333


Q ss_pred             cccc-----cc--cc--------------------ch-----------H-------------HHHH-HHHHHhCCCEEEE
Q 027731           74 AFRM-----SE--VA--------------------EP-----------Y-------------IRRR-AVRHLEKGRVVIF  101 (219)
Q Consensus        74 ~~~~-----~~--~~--------------------~~-----------~-------------~~~~-~~~~l~~g~ipIv  101 (219)
                      ..+.     .|  |.                    ++           +             ++.+ +..+|+.|.|||+
T Consensus       114 ~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~~ed~grg~RrvV~sP~P~~iVe~~~I~~LL~~G~IvI~  193 (317)
T 3kzf_A          114 CVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVIC  193 (317)
T ss_dssp             BCCEEEECTTCGGGTSCCEECC--------------------------CCCCEECCCCEEEETTHHHHHHHHHTTCEEEC
T ss_pred             EEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeEeecCCCCeeeecCCCCCcceECHHHHHHHHHCCCEEEE
Confidence            2211     00  00                    00           0             1223 4468999999666


Q ss_pred             eCCCC-------------CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC------
Q 027731          102 AAGTG-------------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------  162 (219)
Q Consensus       102 ~g~~g-------------~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------  162 (219)
                      +|+.|             ..++|+|++|+.+|.+|+||+|+|+|||||||+ ||+ +|++++|++++++|+.++      
T Consensus       194 aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I~~it~~e~~~li~~g~~  271 (317)
T 3kzf_A          194 TNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKLEEIKLSEILALEKDGHF  271 (317)
T ss_dssp             CGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEECCEEEHHHHHHHHTTTSC
T ss_pred             eCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeECcCcCHHHHHHHHhcCCC
Confidence            53211             235889999999999999999999999999999 897 689999999999887653      


Q ss_pred             --CCCCchHHHHHHHHhCC-CcEEEEecCCCchHHHHhcCCCCceEEecC
Q 027731          163 --DLSVMDMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGGT  209 (219)
Q Consensus       163 --g~~~~k~~aa~~a~~~g-i~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  209 (219)
                        |+|..|+++|..+.+.+ .+++|+|+   +.+.++|+|+ .||+|.++
T Consensus       272 ~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G~-~GT~I~~d  317 (317)
T 3kzf_A          272 AAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNGK-CGTRIIKD  317 (317)
T ss_dssp             C--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTTS-SSEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCCC-CCeEEecC
Confidence              45667999999887654 57999995   4677899997 89999864

>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}

Probab=99.93  E-value=4.8e-25  Score=187.68  Aligned_cols=199  Identities=20%  Similarity=0.251  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHh---HHHhcc--CCCCcChHHHHH-----HHHHHHHHHHHHHHHHhcCCCee
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRG---ASAAGN--SGLDRSSADYIG-----MLATVMNAIFLQATMESIGIPTR   70 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~---~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~gi~a~   70 (219)
                      .+|++|+.|++.|+++|||||||+ ++..   +..++.  .+.+..+.+...     ++...++..+ ...|.+.|+...
T Consensus        49 ~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~~~~~~l~~~~a~tqg~ig~~l~~~l-~~~l~~~gi~~~  127 (332)
T 4axs_A           49 IPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAEAGGMSQGYIGYHMLTAI-SNELKKLNIQKD  127 (332)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCCCCCchhHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCcc
Confidence            478999999999999999999987 3332   222221  122333333322     2333444444 456777776532


Q ss_pred             Ee-----ccccccc------------c--------------------cc--------h----HHHHH-HHHHHhCCCEEE
Q 027731           71 VQ-----TAFRMSE------------V--------------------AE--------P----YIRRR-AVRHLEKGRVVI  100 (219)
Q Consensus        71 ~~-----~~~~~~~------------~--------------------~~--------~----~~~~~-~~~~l~~g~ipI  100 (219)
                      ..     ...+..|            +                    ..        +    .++.. +..++++|+|||
T Consensus       128 v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~~~~~~~g~rrvV~sp~p~~ive~~~I~~L~~~g~Ivi  207 (332)
T 4axs_A          128 VLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVIVEDAGRGFRKVVASPIPVDFIGIDAIKQNVNNGCVCI  207 (332)
T ss_dssp             EEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCCC--------CEECCCCEEEETTHHHHHHHHHTTCEEE
T ss_pred             eeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEEEEccCCCceEECCCCCCceeecHHHHHHhhcCCeEEE
Confidence            11     1111110            0                    00        0    02223 446889999988


Q ss_pred             EeCC------------CC-CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-----
Q 027731          101 FAAG------------TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----  162 (219)
Q Consensus       101 v~g~------------~g-~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----  162 (219)
                      .++.            .| ..++|+|++|+.+|.+++||+|+|+|||||||+++|+  |++++|++++.+|+.++     
T Consensus       208 ~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~~~i~~it~~e~~~~~~~g~  285 (332)
T 4axs_A          208 VGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQKALKTVDVKALNNFINQDQ  285 (332)
T ss_dssp             CCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTCEECSSCBHHHHHHHHHTTC
T ss_pred             ecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cchhhcccCCHHHHHHHHHCCC
Confidence            6542            11 2469999999999999999999999999999998874  77899999999987653     


Q ss_pred             ---CCCCchHHHHHHHHhCCC--cEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          163 ---DLSVMDMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       163 ---g~~~~k~~aa~~a~~~gi--~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                         |+|.+|++||..+.+.|.  .++|.+   ++.+.++++|+ .||+|.
T Consensus       286 ~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~g~-~GT~Iv  331 (332)
T 4axs_A          286 FAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALKGL-SGTKII  331 (332)
T ss_dssp             SCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTTTS-SSEEEB
T ss_pred             cCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHCCC-CCcEEe
Confidence               457779999999988876  456654   56788999996 799996

>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}

Probab=99.92  E-value=9.7e-26  Score=199.79  Aligned_cols=201  Identities=17%  Similarity=0.226  Sum_probs=149.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhcc-----CCCCcCh---HHHHHHHHHHHHHHHHHHHHHhcCCCeeEe
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSS---ADYIGMLATVMNAIFLQATMESIGIPTRVQ   72 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~   72 (219)
                      +++++|+.+++.|.++|||||||++.+. +..++.     .|++.+.   .+.+.++...+|..+++ +|.+.|++++++
T Consensus        79 ~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~gi~~~f~~G~RvTd~~~l~vv~~~~g~vn~~Lv~-aL~~~G~~Av~l  157 (467)
T 3s6k_A           79 ALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNGLRVTSPHALAIVRKVFQASNLKLVE-ALQQNGARATSI  157 (467)
T ss_dssp             HHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTTSCCCCCCSSSCCBCHHHHHHHHHHHHHHHHHHHH-HHHHHTCCBCCC
T ss_pred             HHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceEE
Confidence            6899999999999999999999996554 333332     2444333   34455555578888774 889999999987


Q ss_pred             ccccc--c-----ccc---c-hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEEeeeccC
Q 027731           73 TAFRM--S-----EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVD  135 (219)
Q Consensus        73 ~~~~~--~-----~~~---~-~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~liiltDV~  135 (219)
                      ++...  .     ++.   + ..++ +.+..+|+.|.|||+++.    .| ..++++|++|+.+|.+|+||+|+|+||||
T Consensus       158 sg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~  237 (467)
T 3s6k_A          158 TGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQILNVNADFAANELVQELQPYKIIFLTGTG  237 (467)
T ss_dssp             CSSSBCCCBSCSSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCCCCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSC
T ss_pred             cCccEEEEeccCcccCccceEEEEcHHHHHHHHHCCCEEEEECceECCCCcEEecCHHHHHHHHHHhcCCCEEEEEeccc
Confidence            65211  1     110   0 0123 345578999999999953    23 34689999999999999999999999999


Q ss_pred             ccccCCCCCCCCCcccccccHH-HHhhC-------CCCCchHHHHHHHHhCCCcEEEEecCCCchHH-HHhcCCCCceEE
Q 027731          136 GVYDDNPRRNPNARLLDTLTYQ-EVTSK-------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLI  206 (219)
Q Consensus       136 Gv~~~dP~~~~~a~~i~~i~~~-e~~~~-------g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~-~~l~g~~~GT~i  206 (219)
                      |||++|      +++|++++.. |+..+       |+|..|++++..+.+.+.++++++++.|+.+. ++++++++||+|
T Consensus       238 Gv~~~~------~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i  311 (467)
T 3s6k_A          238 GLLDAE------GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLV  311 (467)
T ss_dssp             SCCCSS------CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCB
T ss_pred             ceeCCC------CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEE
Confidence            999853      6788888874 43322       45566999998888743368999999999986 678999999999


Q ss_pred             ecC
Q 027731          207 GGT  209 (219)
Q Consensus       207 ~~~  209 (219)
                      .+.
T Consensus       312 ~~~  314 (467)
T 3s6k_A          312 RRG  314 (467)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d2a1fa1	236	c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi	4e-46
d1ybda1	236	c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri	6e-42
d2ij9a1	219	c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog	3e-40
d1z9da1	238	c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc	4e-39
d2brxa1	225	c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc	3e-30
d2cdqa1	304	c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar	3e-19
d2hmfa1	302	c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja	1e-17
d2j0wa1	292	c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli	7e-17
d2akoa1	250	c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobact	1e-12

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

 Score =  150 bits (380), Expect = 4e-46
 Identities = 91/205 (44%), Positives = 143/205 (69%), Gaps = 1/205 (0%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
            +A E+  +  +G+EV++V+GGGN+FRGA     +G++R   D++GMLATVMN + ++ +
Sbjct: 32  RMAVEIKELVEMGVEVSVVLGGGNLFRGAKL-AKAGMNRVVGDHMGMLATVMNGLAMRDS 90

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
           +    +  ++ +AF+++ + + Y    A++ L + RVVIF+AGTGNPFFTTD+ A LR  
Sbjct: 91  LFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGI 150

Query: 122 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIP 181
           EI A+VVLKAT VDGVYD +P +NP+A+L   L+Y EV  K+L VMD++A TL +++ +P
Sbjct: 151 EIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMP 210

Query: 182 VVVFNLNQPGNIAKAIQGERVGTLI 206
           + VFN+ +PG + + + G   GT I
Sbjct: 211 IRVFNMGKPGALRQVVTGTEEGTTI 235

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

 Score =  140 bits (352), Expect = 6e-42
 Identities = 110/205 (53%), Positives = 154/205 (75%), Gaps = 1/205 (0%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
               E+A V ++G++V IVVGGGNIFRG SA     +DR++ADY+GM+ATVMNA+ L+  
Sbjct: 31  QTVGEIAEVVKMGVQVGIVVGGGNIFRGVSA-QAGSMDRATADYMGMMATVMNALALKDA 89

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
            E++GI  RVQ+A  M ++AE Y R +A+++LE+G+VVIFAAGTGNPFFTTDTAAALR A
Sbjct: 90  FETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGA 149

Query: 122 EINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIP 181
           E+N +V+LKATNVDGVY  +P+++P+A   +T+T+ E   K+L VMD TA  LC+E  + 
Sbjct: 150 EMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLN 209

Query: 182 VVVFNLNQPGNIAKAIQGERVGTLI 206
           +VVF + + G++ + I GE  GTL+
Sbjct: 210 IVVFGIAKEGSLKRVITGEDEGTLV 234

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  135 bits (340), Expect = 3e-40
 Identities = 67/215 (31%), Positives = 99/215 (46%), Gaps = 27/215 (12%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
             A+ + SV +   +V +VVGGG + R    +A   G   +  DYIG+ AT +NA+ L +
Sbjct: 21  EFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLIS 79

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
            + S                  P     A    +  RVV+   G   P  TTD  AAL  
Sbjct: 80  AIPSAAKKV-------------PVDFMEAEELSKLYRVVVM--GGTFPGHTTDATAALLA 124

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL---------SVMDMTA 171
             I A+V + ATNVDGVY  +P+ + +A   D L+ Q++               V+D+ A
Sbjct: 125 EFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLA 184

Query: 172 ITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
             + + + I   V     P NI KA++GE VGT+I
Sbjct: 185 AKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTVI 218

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  132 bits (333), Expect = 4e-39
 Identities = 104/208 (50%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQAT 61
           AIA+E+A V   G+++A+V+GGGN++RG   A ++G+DR  ADY GML TVMNA+ +  +
Sbjct: 31  AIAKEIAEVHVSGVQIALVIGGGNLWRG-EPAADAGMDRVQADYTGMLGTVMNALVMADS 89

Query: 62  MESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCA 121
           ++  G+ TRVQTA  M  VAEPYIR RA+RHLEK R+V+F AG G+P+F+TDT AALR A
Sbjct: 90  LQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAA 149

Query: 122 EI-NAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNI 180
           EI    +++    VDGVY+ +P+++ NA   D LT+ EV  + L +MD TA TL  +N+I
Sbjct: 150 EIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDI 209

Query: 181 PVVVFNLNQPGNIAKAIQGERVGTLIGG 208
            +VVFN+N+ GNI + + GE +GT +  
Sbjct: 210 DLVVFNMNEAGNIQRVVFGEHIGTTVSN 237

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  109 bits (273), Expect = 3e-30
 Identities = 57/215 (26%), Positives = 93/215 (43%), Gaps = 25/215 (11%)

Query: 2   AIAREVASVTRLGIEVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQA 60
            IA ++  V+    EVA+VVGGG + R     A       +  D+IG+  T  NA+ L A
Sbjct: 24  EIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIA 82

Query: 61  TMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRC 120
            +                 V E +        L+K    I   G  +P  TTD  AAL  
Sbjct: 83  ALREK----------AYPVVVEDFWEAWKAVQLKK----IPVMGGTHPGHTTDAVAALLA 128

Query: 121 AEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS---------KDLSVMDMTA 171
             + A++++  TNVDGVY  +P+++P A+ +  +  +E+              SV+D  A
Sbjct: 129 EFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLA 188

Query: 172 ITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
             +   + I  +V       ++ + I+G+  GT I
Sbjct: 189 AKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 223

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 81.8 bits (201), Expect = 3e-19
 Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 36/199 (18%)

Query: 42  SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV--------------AEPYIRR 87
           + DY+      ++     A + +IG+  R   AF +  +                   +R
Sbjct: 115 TRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKR 174

Query: 88  RAVRHLEKGRVVIFAAGTGN----------PFFTTDTAAALRCAEINAEVVLKATNVDGV 137
                +    V I     G               +D  A      +  + +    +VDGV
Sbjct: 175 LYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGV 234

Query: 138 YDDNPRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 194
              +P     A  +  LT+ E          V+   ++   +E  IPV V N   P    
Sbjct: 235 LTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNP---- 290

Query: 195 KAIQGERVGTLIGGTWNST 213
                +  GT+I  T + T
Sbjct: 291 -----KAPGTIITKTRDMT 304

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 77.6 bits (190), Expect = 1e-17
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 31/188 (16%)

Query: 41  SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE----------PYIRRRAV 90
            S DYI      +++  L   +  +G  +          + +            ++ R +
Sbjct: 119 KSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLL 178

Query: 91  RHLEKGRVVIFAAGTGN---------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 141
             L++G + +     G              +D +AAL    ++A+++   T+V GVY  +
Sbjct: 179 PLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTD 238

Query: 142 PRRNPNARLLDTLTYQEV---TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 198
           PR  P AR +  L+Y E          V+    I    E  IP++V N  +P        
Sbjct: 239 PRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEP-------- 290

Query: 199 GERVGTLI 206
            E  GTLI
Sbjct: 291 -ESEGTLI 297

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 75.3 bits (184), Expect = 7e-17
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 12/102 (11%)

Query: 108 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV---TSKDL 164
               +D  AAL    ++A  V   T+V G+Y  +PR    A+ +D + + E     +   
Sbjct: 195 GRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGA 254

Query: 165 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 206
            V+    +     ++IPV V +   P            GTL+
Sbjct: 255 KVLHPATLLPAVRSDIPVFVGSSKDP---------RAGGTLV 287

>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} Length = 250

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Glutamate 5-kinase
species: Campylobacter jejuni [TaxId: 197]

 Score = 62.8 bits (151), Expect = 1e-12
 Identities = 33/226 (14%), Positives = 74/226 (32%), Gaps = 22/226 (9%)

Query: 2   AIAREVASVTRLGIEVAIVVGG--GNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQ 59
            +   +A +     EV +V                 + +++     IG    +     L 
Sbjct: 25  NLVAFLAKLME-KYEVILVTSAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELL 83

Query: 60  ATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFA-----AGTGNPFFTTDT 114
           A    +G    +      S  A  + +      +  G + I       A     F   D+
Sbjct: 84  AKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDS 143

Query: 115 AAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMT---- 170
            +A      +A++++  +++DG YD NP    +A+ L+ +T+ +      ++   +    
Sbjct: 144 LSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGT 203

Query: 171 --------AITLCQENNIPVVVFNLNQPGNIAKAIQGER--VGTLI 206
                   A     E+N  + + +          +  ++   GTL 
Sbjct: 204 GGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLF 249

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d2brxa1	225	Uridylate kinase PyrH {Pyrococcus furiosus [TaxId:	100.0
d2ij9a1	219	Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax	100.0
d2a1fa1	236	Uridylate kinase PyrH {Haemophilus influenzae [Tax	100.0
d1ybda1	236	Uridylate kinase PyrH {Neisseria meningitidis [Tax	100.0
d2akoa1	250	Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1	99.98
d1z9da1	238	Uridylate kinase PyrH {Streptococcus pyogenes [Tax	99.97
d2bufa1	300	N-acetyl-l-glutamate kinase {Pseudomonas aeruginos	99.97
d2j0wa1	292	Aspartokinase {Escherichia coli [TaxId: 562]}	99.96
d2hmfa1	302	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.96
d2ap9a1	291	N-acetyl-l-glutamate kinase {Mycobacterium tubercu	99.96
d2cdqa1	304	Aspartokinase {Thale cress (Arabidopsis thaliana)	99.96
d2btya1	282	N-acetyl-l-glutamate kinase {Thermotoga maritima [	99.95
d1e19a_	313	Carbamate kinase {Archaeon Pyrococcus furiosus [Ta	99.94
d1b7ba_	307	Carbamate kinase {Enterococcus faecium [TaxId: 135	99.91
d1gs5a_	258	N-acetyl-l-glutamate kinase {Escherichia coli [Tax	99.85

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=8.5e-38  Score=252.57  Aligned_cols=192  Identities=27%  Similarity=0.440  Sum_probs=159.1

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhc-cCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|+++++ ++++|||||||++++++.... ..+.+....++.+..++++|..++...|.+.|++....+       
T Consensus        24 ~l~~~I~~l~~-~~~~viV~ggG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------   95 (225)
T d2brxa1          24 EIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVVVED-------   95 (225)
T ss_dssp             HHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSCBCS-------
T ss_pred             HHHHHHHHHHc-CCcEEEEECccHHHHHHHHhhhhcchhhHHHHHhhhhHHHHHHHHHHHHHHhhhccccccc-------
Confidence            57899999877 789999999999998765443 345555556777778889999888889999988764211       


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                         +  .+..++++.+.+|+++++  .++.+||++|+++|..++||+|+|+|||||||++||+.+|++++|++++++|+.
T Consensus        96 ---~--~~~~~~l~~~~ipv~~~~--~~~~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt~dP~~~~~Ak~i~~i~~~e~~  168 (225)
T d2brxa1          96 ---F--WEAWKAVQLKKIPVMGGT--HPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELL  168 (225)
T ss_dssp             ---H--HHHHHHHHTTCBCEECCC--STTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHH
T ss_pred             ---H--HHHHHHHHhcccccccCC--CCCcchhHHHHHHHHHhCchhhhhhhhhhhhhhcccccccccccceEEecchHH
Confidence               1  123457889999999874  467899999999999999999999999999999999999999999999999877


Q ss_pred             hC--------CCCC-chHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          161 SK--------DLSV-MDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       161 ~~--------g~~~-~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      ++        |+++ ++..|++.|.++|++++|+||++|+.|.++++|+.+||+|.|
T Consensus       169 ~~~~~~~~~~g~gg~~~k~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i~P  225 (225)
T d2brxa1         169 EIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  225 (225)
T ss_dssp             HHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             HHhccCccccCCCCcccHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCcEecC
Confidence            53        2332 344589999999999999999999999999999999999976

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.5e-36  Score=244.21  Aligned_cols=189  Identities=34%  Similarity=0.466  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhc-cCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAG-NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV   80 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~   80 (219)
                      +++++|+++++. +++|||||||++++++.... ..+++....++++.+++.+|..+++..|...+....          
T Consensus        21 ~la~~i~~l~~~-~~~vIVvsgG~~ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------   89 (219)
T d2ij9a1          21 EFAKTIESVAQQ-NQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVP----------   89 (219)
T ss_dssp             HHHHHHHHHHHH-SEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCTTBCSSCC----------
T ss_pred             HHHHHHHHHHcC-CcEEEEECCCccccchhhhhhhcCccHHHHHHHHHHHHHhhHHHHHHHhhhccchhh----------
Confidence            588999999885 59999999999998875443 356776677888888888898887777776665532          


Q ss_pred             cchHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731           81 AEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        81 ~~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                       ..+  .+..++++.+.+|+..+  +.++++||++|+++|..++||.|+++|||||||++||+.+|+|++|++++++|+.
T Consensus        90 -~~~--~~~~~l~~~~~v~v~~~--~~~~~stD~laa~vA~~l~Ad~liilTDVDGvYt~dP~~~~~A~~i~~is~~e~~  164 (219)
T d2ij9a1          90 -VDF--MEAEELSKLYRVVVMGG--TFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLV  164 (219)
T ss_dssp             -SSH--HHHHHHHTTCSEEEECC--CSSSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHH
T ss_pred             -HHH--HHHHHHhccCCceEECC--CCCCCcccHHHHHHHHHcCchHhhhccCcccccccccccCcccccccccCHHHHH
Confidence             111  22346778889998876  4678999999999999999999999999999999999999999999999999876


Q ss_pred             hC---------CCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          161 SK---------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       161 ~~---------g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      ++         |+|.+|++|++.|.++|++++|+||+ |++|.++++|+.+||+|.
T Consensus       165 ~~~~~~~~~~~gg~~~k~~Aa~~a~~~gi~~~I~~g~-~~ni~~~l~Ge~vGT~Is  219 (219)
T d2ij9a1         165 EIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILGT-PENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             HHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEECC-HHHHHHHHTTCCCSEEEC
T ss_pred             HHhhccCccCCCCCcchHHHHHHHHHcCCcEEEecCC-CcHHHHHHCCCCCceEeC
Confidence            53         45678999999999999999999996 788999999999999984

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=3e-35  Score=238.59  Aligned_cols=205  Identities=42%  Similarity=0.772  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      +++++|+++++.|+++++|+||+. +.++..+...+.+..........+...+..++...+...................
T Consensus        32 ~la~~I~~l~~~g~~vivVssg~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (236)
T d2a1fa1          32 RMAVEIKELVEMGVEVSVVLGGGN-LFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGIC  110 (236)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTT-TCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTS
T ss_pred             HHHHHHHHHHHCCCeEEEEecccc-cchhhhhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhH
Confidence            689999999999999999996543 3333333322333323333333444444444444555555554433322211111


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  161 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  161 (219)
                      .......+...++.+.+|++.+..+.+++|||++|+.+|.+++||.|+++||||||||+||+.+|+++++++++++|+.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dnD~laa~vA~~~~Ad~lii~TDVdGvyt~dP~~~~~A~~i~~i~~~e~l~  190 (236)
T d2a1fa1         111 DTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVID  190 (236)
T ss_dssp             EECCHHHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHH
T ss_pred             HHhhhhhhhhhhhhcccccccccccCCCCCCcHHHHHHHHHhchhHHHHhhcccccccccccccccccccccccHHHHHh
Confidence            11112334567788999988887778899999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      .|+|++|++|++.|.++|++++|+||++|+.|.++++|+.+||+|+
T Consensus       191 ~G~~v~k~~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI~  236 (236)
T d2a1fa1         191 KELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC  236 (236)
T ss_dssp             TTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEEC
T ss_pred             cCCceeHHHHHHHHHHCCCeEEEEeCCCCcHHHHHHcCCCCcceeC
Confidence            8999999999999999999999999999999999999999999996

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=1.8e-33  Score=227.47  Aligned_cols=205  Identities=53%  Similarity=0.904  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      ++|++|+++++.|+++++|+|||..++. ......+...................+....+...+.....+.........
T Consensus        31 ~la~~I~~l~~~g~~vviVssG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (236)
T d1ybda1          31 QTVGEIAEVVKMGVQVGIVVGGGNIFRG-VSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIA  109 (236)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCHHHHHH-HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSC
T ss_pred             HHHHHHHHHHHCCCEEEEEecccccccc-ccccccccccchhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhhh
Confidence            6899999999999999999976654432 222212233222222333333344444455666777777655443332222


Q ss_pred             chHHHHHHHHHHhCCCEEEEeCCCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS  161 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~  161 (219)
                      ...........++.+.+++.....+.++++||.+|+++|..++||.|+++|||||||++||+.+|+++++++++++|..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdnD~laa~vA~~~~ad~liilTdVdGvy~~dP~~~~~a~~~~~~~~~e~~~  189 (236)
T d1ybda1         110 ETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALL  189 (236)
T ss_dssp             EECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHH
T ss_pred             hhHHHHHHHhhhccCceeccccccccccccchHHHHHHHHHhCccceeeccCccchhhccccccccceeeccccHHHHHh
Confidence            21111234456788888888877778999999999999999999999999999999999999999999999999999888


Q ss_pred             CCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEe
Q 027731          162 KDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  207 (219)
Q Consensus       162 ~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~  207 (219)
                      .|+++||+.|++.|.++|++++|+||++|+.|.++++|+.+||+|.
T Consensus       190 ~g~~~m~~~Aa~~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh  235 (236)
T d1ybda1         190 KNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH  235 (236)
T ss_dssp             TTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred             cCchHHHHHHHHHHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeC
Confidence            8999999999999999999999999999999999999999999996

>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Glutamate 5-kinase
species: Campylobacter jejuni [TaxId: 197]

Probab=99.98  E-value=1.5e-31  Score=218.84  Aligned_cols=200  Identities=16%  Similarity=0.177  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHH---HHHHHHHHHHHHHHhcCCCeeEecccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGML---ATVMNAIFLQATMESIGIPTRVQTAFRMS   78 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~gi~a~~~~~~~~~   78 (219)
                      +++++|+++++ ++++||||||| .+.++..++   +........+.+   ++.....++...|.++|+.+.... .+..
T Consensus        25 ~~~~~I~~l~~-~~~~vIV~gGa-~~~G~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~l-~~~~   98 (250)
T d2akoa1          25 NLVAFLAKLME-KYEVILVTSAA-ISAGHTKLD---IDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQIL-LTGK   98 (250)
T ss_dssp             HHHHHHHHHHH-HSEEEEEECCH-HHHHHHHCC---CCSSSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEE-ECTG
T ss_pred             HHHHHHHHHHc-CCeEEEEEcCc-ccccccccc---cccchhhhhhhhhcccchhHHHHHHHHhhhccccccccc-cccc
Confidence            58999999986 78999998643 333445444   444433333333   334455566788999999886422 2222


Q ss_pred             cccch--H--HHHHHHHHHhCCCEEEEeCCCC-----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCc
Q 027731           79 EVAEP--Y--IRRRAVRHLEKGRVVIFAAGTG-----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNAR  149 (219)
Q Consensus        79 ~~~~~--~--~~~~~~~~l~~g~ipIv~g~~g-----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~  149 (219)
                      .+..+  +  ..+.+..+++.+.+|++++...     ..++++|++|+++|..++|++|+++||||||||+||+.+|+|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~~~ipv~~~~~~~~~~~~~~~~~D~~A~~lA~~~~a~~li~~tdVdGVyd~dP~~~~~Ak  178 (250)
T d2akoa1          99 DFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAK  178 (250)
T ss_dssp             GGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCC
T ss_pred             chhhhhhhhhhhHHHHHHHHhCcccccccCccccccccccccchhhHHHHHHhcccceeeeccCCCceeeCCCccccccc
Confidence            22211  1  1233557899999999987521     2468999999999999999999999999999999999999999


Q ss_pred             ccccccH--HHHhh--------CCCCCc--hHHHHHHHHhCCCcEEEEecCCCchHHHHh-cCCC-CceEEe
Q 027731          150 LLDTLTY--QEVTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAI-QGER-VGTLIG  207 (219)
Q Consensus       150 ~i~~i~~--~e~~~--------~g~~~~--k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l-~g~~-~GT~i~  207 (219)
                      +|+++++  ++..+        .|+++|  |++||+.|.++|++|+|+||++|+++.+++ .++. .||+|.
T Consensus       179 ~i~~It~~~~~~~~~~~~~~s~~~tGGM~~Kl~aa~~~~~~gi~v~I~nG~~~~~l~~~l~~~~~~~GTv~~  250 (250)
T d2akoa1         179 RLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE  250 (250)
T ss_dssp             BCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHSCCCCSSEEEC
T ss_pred             chhhccccchHHhhhhcccCCCCCCCchHHHHHHHHHHHHCCCCEEEecCCCccHHHHHHhCCCCCCceEeC
Confidence            9999997  33322        134444  899999999999999999999999999876 4544 599983

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.97  E-value=6.4e-30  Score=205.97  Aligned_cols=206  Identities=47%  Similarity=0.753  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHhHHHhccCCCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccccc
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA   81 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~   81 (219)
                      ++|++|++++++|+++++|+|||..++...... .+............+...+..+++..+..+|+..............
T Consensus        31 ~ia~~I~~l~~~g~~Vv~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  109 (238)
T d1z9da1          31 AIAKEIAEVHVSGVQIALVIGGGNLWRGEPAAD-AGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVA  109 (238)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHH-HTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTTB
T ss_pred             HHHHHHHHHHHCCCEEEEEecccccccceeccc-cCCcchhHHHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhhHHHH
Confidence            689999999999999999998876554332221 1233323333444555555566667888889987654433322221


Q ss_pred             chHHHHHHHHHHhCCCEEEEeC-CCCCCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHh
Q 027731           82 EPYIRRRAVRHLEKGRVVIFAA-GTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT  160 (219)
Q Consensus        82 ~~~~~~~~~~~l~~g~ipIv~g-~~g~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~  160 (219)
                      ...........+.....+.... .....+.++|.+++.+|..++|+.++++|||||+|++||+.+|++++++++++.|..
T Consensus       110 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~a~~li~~tdVdGvy~~~P~~~~~a~~~~~~~~~~~~  189 (238)
T d1z9da1         110 EPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVI  189 (238)
T ss_dssp             EECCHHHHHHHHHTTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHH
T ss_pred             hhhhHHHHHhhhccccccceecceeccCCCCchHHHHHHHHHhhhhhhcccccccceecccccccccchhhccccccchh
Confidence            1111112223333344444333 233456789999999999999999999999999999999999999999999999988


Q ss_pred             hCCCCCchHHHHHHHHhCCCcEEEEecCCCchHHHHhcCCCCceEEec
Q 027731          161 SKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       161 ~~g~~~~k~~aa~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                      ..|+|+||++|++.|.++|++++|+||++|+.|.++++|+.+||+|+.
T Consensus       190 ~~g~~~~k~~Aa~~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~  237 (238)
T d1z9da1         190 KRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN  237 (238)
T ss_dssp             TTTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             ccCcchhHHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCceEecc
Confidence            889999999999999999999999999999999999999999999975

>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=1.5e-29  Score=211.94  Aligned_cols=202  Identities=18%  Similarity=0.220  Sum_probs=154.2

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-----CCCCcChHHHH---HH-HHHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDRSSADYI---GM-LATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-----~~~~~~~~~~~---~~-~~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.|+..|.++|||||||+ +...+...+.     .|++.+..+.+   .+ ++..+|..++ +.|.++|+++.+
T Consensus        46 ~~~~dIa~L~~~G~~vViVhGgg~~i~~~l~~~gi~~~~~~g~RvT~~~~l~~~~~~~~g~vn~~lv-~~l~~~g~~a~~  124 (300)
T d2bufa1          46 GFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDIV-NLINRHGGSAIG  124 (300)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHHHH-HHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHcCCcEEEecChHHHHHHHHHhcccCceecCCcccccchhHHHHHHHHHhHHHHHHH-HHHHhcCCcccc
Confidence            589999999999999999999998 4444444442     34444443333   22 3456787776 588899999998


Q ss_pred             eccccccccc--------------ch------------HHHHHH-HHHHhCCCEEEEeCC----CCC-CccChHHHHHHH
Q 027731           72 QTAFRMSEVA--------------EP------------YIRRRA-VRHLEKGRVVIFAAG----TGN-PFFTTDTAAALR  119 (219)
Q Consensus        72 ~~~~~~~~~~--------------~~------------~~~~~~-~~~l~~g~ipIv~g~----~g~-~~~~sD~~Aa~l  119 (219)
                      +++.+...+.              .+            .++..+ ..+|+.|.|||+++.    .|. .++++|.+|+.+
T Consensus       125 l~~~d~~~i~~~~~~~~~~~~~~~~~~~id~g~~G~v~~v~~~~i~~ll~~g~Ipvis~~~~~~~G~~~nin~D~~Aa~l  204 (300)
T d2bufa1         125 LTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKV  204 (300)
T ss_dssp             EEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHTTCEEEEEEEEECTTSCEEECCHHHHHHHH
T ss_pred             cCCCccceEEeecccccccCcccccccccccCcccceeecchhHHHHHhcCCCeEEecccccCcccchhcccHHHHHHHH
Confidence            7765432110              00            123444 468999999999973    333 459999999999


Q ss_pred             HHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCc
Q 027731          120 CAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPG  191 (219)
Q Consensus       120 A~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~  191 (219)
                      |.+|+||+|+|+|||||||+.+      .+++++++..++.++       |+|..|+++|..|.+.|++ |+|+|++.|+
T Consensus       205 A~~L~AdkLI~Ltdv~Gv~~~~------g~~~~~l~~~~~~~li~~~~i~gGM~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~  278 (300)
T d2bufa1         205 AEALKAEKLMLLTNIAGLMDKQ------GQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPN  278 (300)
T ss_dssp             HHHHTCSEEEEEESSSCCBCTT------SCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTT
T ss_pred             HHHcCCCeEEEEcCCCccccCC------CcchhhccHHHHHHHHHcCCcCchHHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence            9999999999999999999764      367888888876653       4566799999999999996 9999999999


Q ss_pred             hHH-HHhcCCCCceEEecCC
Q 027731          192 NIA-KAIQGERVGTLIGGTW  210 (219)
Q Consensus       192 ~i~-~~l~g~~~GT~i~~~~  210 (219)
                      .|+ ++|+++++||+|+.+.
T Consensus       279 ~ll~eLft~~g~GT~I~~~~  298 (300)
T d2bufa1         279 AVLLEIFTDSGVGTLISNRK  298 (300)
T ss_dssp             HHHHHHSSTTCCSEEEECCC
T ss_pred             HHHHHHcCCCCceeEEecCC
Confidence            875 7899999999998765

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.2e-28  Score=205.70  Aligned_cols=157  Identities=20%  Similarity=0.260  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCeeEecccccccccc------h---HHH----HHHHHHHhCCCEEEEeCCC-----
Q 027731           44 DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE------P---YIR----RRAVRHLEKGRVVIFAAGT-----  105 (219)
Q Consensus        44 ~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~~~------~---~~~----~~~~~~l~~g~ipIv~g~~-----  105 (219)
                      +.+...++++++.+++.+|++.|+++.++++.+.....+      +   ...    .++...++. .+||++||.     
T Consensus       110 d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~i~Vv~GFig~~~~  188 (292)
T d2j0wa1         110 DELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLNE-GLVITQGFIGSENK  188 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCTTSCCBCHHHHHHHHHHHTHHHHHH-SEEEEESSEEECTT
T ss_pred             HHHHhhhHHHhHHHHHHHHHhcCCCccccchhheeecCCccccccchhhhhhhhhhhhhhhhhcc-cccccccccccccC
Confidence            444556789999999999999999999887765432211      1   111    122233443 589999972     


Q ss_pred             C----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhC
Q 027731          106 G----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQEN  178 (219)
Q Consensus       106 g----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~  178 (219)
                      |    ..+++||++|+.+|.+|+|+++.+||||||||++||+.+|+|++|+++||+|+.++   |..++|+++..++.++
T Consensus       189 G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP~~v~~A~~i~~lsy~EA~ela~~GakVlhp~ti~p~~~~  268 (292)
T d2j0wa1         189 GRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRS  268 (292)
T ss_dssp             SCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHH
T ss_pred             CceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeechhhcCCCceEcceeCHHHHHHHHhCCccccCHHHHHHHHHc
Confidence            3    25789999999999999999999999999999999999999999999999998875   8899999999999999


Q ss_pred             CCcEEEEecCCCchHHHHhcCCCCceEEecCC
Q 027731          179 NIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       179 gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      +||++|.|.++|+         ..||+|..+.
T Consensus       269 ~Ipi~i~nt~~p~---------~~GT~I~~~~  291 (292)
T d2j0wa1         269 DIPVFVGSSKDPR---------AGGTLVCNKT  291 (292)
T ss_dssp             TCCEEEEESSCTT---------SCCEEEESCC
T ss_pred             CCcEEEeeCCCCC---------CCCCeEecCC
Confidence            9999999999987         6799998654

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=4.5e-28  Score=202.91  Aligned_cols=156  Identities=24%  Similarity=0.313  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeeEecccccccc-----cch-----HHHHHHHHHHhCCCEEEEeCCC-----C----
Q 027731           46 IGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEV-----AEP-----YIRRRAVRHLEKGRVVIFAAGT-----G----  106 (219)
Q Consensus        46 ~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~~-----~~~-----~~~~~~~~~l~~g~ipIv~g~~-----g----  106 (219)
                      +-..++++++.+++.+|++.|+++.++.+.+....     ...     ....++.+.++.+.+||++||.     |    
T Consensus       124 ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~v~Vv~GFig~~~~G~~tt  203 (302)
T d2hmfa1         124 ILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITT  203 (302)
T ss_dssp             HHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEECTTCCEEE
T ss_pred             HhhhhhhHHhHHHHHHHHHcCCceEEeeccccccccCCccchhhhhhhhhHHHHHHHHhcCCeEEeecccccCCCCCEEE
Confidence            33456789999999999999999988776654211     110     1234566778899999999972     2    


Q ss_pred             CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHHHHhCCCcEE
Q 027731          107 NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVV  183 (219)
Q Consensus       107 ~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~a~~~gi~v~  183 (219)
                      ..+++||++|+.+|..|+|+++++||||||||++||+.+|+++++++++|+|+.++   |..++|++++.+|.+++||++
T Consensus       204 LgRgGSD~tA~~la~~l~A~~~~i~tdv~gi~~~dP~~~~~a~~~~~~~y~ea~eLa~~g~~v~h~~~~~~~~~~~i~i~  283 (302)
T d2hmfa1         204 LGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPIL  283 (302)
T ss_dssp             CCTTTHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHTTCCEE
T ss_pred             EeccCcccHHHHHHHHhccHHHHHHhccchhccchhhcCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHcCCCEE
Confidence            25689999999999999999999999999999999999999999999999998875   888999999999999999999


Q ss_pred             EEecCCCchHHHHhcCCCCceEEecCC
Q 027731          184 VFNLNQPGNIAKAIQGERVGTLIGGTW  210 (219)
Q Consensus       184 I~~g~~~~~i~~~l~g~~~GT~i~~~~  210 (219)
                      |.|.++|+         .+||+|.++.
T Consensus       284 v~~~~~~~---------~~gT~i~~~~  301 (302)
T d2hmfa1         284 VKNTFEPE---------SEGTLITNDM  301 (302)
T ss_dssp             EEETTSTT---------SCCEEEESCC
T ss_pred             EeeCCCCC---------CCCCEEcCCC
Confidence            99999886         6899998764

>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=6.5e-28  Score=201.13  Aligned_cols=203  Identities=18%  Similarity=0.210  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHH-HhHHHhcc-----CCCCcChHHHH---HHH-HHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIF-RGASAAGN-----SGLDRSSADYI---GML-ATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~-~~~~~~~~-----~~~~~~~~~~~---~~~-~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.|++.|+++|||||||+.. ..+...+.     .+.+.+....+   .+. ....+..+ .+.+..+|..+.+
T Consensus        45 ~l~~dia~L~~~G~~vVlVhGg~~~i~~~l~~~~~~~~~~~~~r~t~~~~~~~v~~~~~~~~~~~~-~~~~~~~g~~~~~  123 (291)
T d2ap9a1          45 AFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGREL-VNLINAHGPYAVG  123 (291)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCCSSSSCCBCHHHHHHHHHHHHHTHHHHH-HHHHTTSSSCEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCccccchhHHHcCCCcccccccccCcHHHHHHHHHhhhhHHHHHH-HHHHHhcCCcccc
Confidence            58999999999999999999999854 33444432     23333333322   222 23344444 4688889998886


Q ss_pred             ecccccccc-----------cc---h------HHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCC
Q 027731           72 QTAFRMSEV-----------AE---P------YIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINA  125 (219)
Q Consensus        72 ~~~~~~~~~-----------~~---~------~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~A  125 (219)
                      ....+...+           ..   .      .++ ..+..+|+.|.+||+++.    .| ..++++|.+|+.+|.+++|
T Consensus       124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~G~v~~v~~~~I~~ll~~g~ipvi~~~~~~~~g~~~n~d~D~lAa~lA~~l~A  203 (291)
T d2ap9a1         124 ITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGA  203 (291)
T ss_dssp             EETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEEESEEECTTCCEEEECHHHHHHHHHHHTTC
T ss_pred             chhhhcccccccccccccccccccceeecccccchHHHHHHHHhcCCCcccCccccCCccccccccHHHHHHHHHHhcCC
Confidence            654322110           00   0      122 335578999999999984    23 2468999999999999999


Q ss_pred             ceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-----CCCCchHHHHHHHHhCCCc-EEEEecCCCchHH-HHhc
Q 027731          126 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQ  198 (219)
Q Consensus       126 d~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i~-~~l~  198 (219)
                      |+|+|+|||||||+++|+..   +++++++..++.++     |+|..|+++|..|.+.|++ |+|+||+.++.|. ++|+
T Consensus       204 dkLI~LTdv~Gv~~~~~~~~---~~~~~~~~~~~~~~~~~~~gGM~~Kl~aA~~a~~~Gv~rv~Ii~g~~~~~ll~eLft  280 (291)
T d2ap9a1         204 EKLLMLTDIDGLYTRWPDRD---SLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFT  280 (291)
T ss_dssp             SEEEEEESSSSEETTTTCTT---CEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHS
T ss_pred             cEEEEeeccCcccccccccc---cccccCCHHHHHHHHhhhhCchHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhc
Confidence            99999999999999988543   56677777666542     5666799999999999997 9999999999886 6899


Q ss_pred             CCCCceEEec
Q 027731          199 GERVGTLIGG  208 (219)
Q Consensus       199 g~~~GT~i~~  208 (219)
                      ++++||+|..
T Consensus       281 ~~g~GT~I~r  290 (291)
T d2ap9a1         281 DAGTGTKVVR  290 (291)
T ss_dssp             CCCCSEEEEC
T ss_pred             CCCCceEEec
Confidence            9999999974

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=7.6e-28  Score=201.73  Aligned_cols=162  Identities=22%  Similarity=0.257  Sum_probs=134.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCeeEeccccccc-----ccc-----hHH---HHH-HHHHHhCCCEEEEeCCC--
Q 027731           42 SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-----VAE-----PYI---RRR-AVRHLEKGRVVIFAAGT--  105 (219)
Q Consensus        42 ~~~~~~~~~~~~~~~l~~~~l~~~gi~a~~~~~~~~~~-----~~~-----~~~---~~~-~~~~l~~g~ipIv~g~~--  105 (219)
                      ..+.+-..++++++.+++.+|++.|+++.++++.+...     +.+     ...   ..+ +..+++.+.+||++||.  
T Consensus       115 ~~D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~v~vv~Gfig~  194 (304)
T d2cdqa1         115 TRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGK  194 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEE
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHcCCceEEEeecccccccccccccccccccchhhhHHHHhhhhhccCcEEEeeccccc
Confidence            34556667889999999999999999999887766421     111     011   122 23567889999999972  


Q ss_pred             ----C----CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC---CCCCchHHHHHH
Q 027731          106 ----G----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITL  174 (219)
Q Consensus       106 ----g----~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~aa~~  174 (219)
                          |    ..+++||++|+.+|.+|+|+++.|||||||||++||+.+|++++|++++|+|+.++   |..++|+++..+
T Consensus       195 ~~~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~v~~a~~i~~lsy~EA~ela~~GakvlHp~ti~p  274 (304)
T d2cdqa1         195 GWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRP  274 (304)
T ss_dssp             ETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHH
T ss_pred             cCcCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchheeccccccCCceEcCccCHHHHHHHHhCCCcccCHHHHHH
Confidence                2    24689999999999999999999999999999999999999999999999998875   899999999999


Q ss_pred             HHhCCCcEEEEecCCCchHHHHhcCCCCceEEecCCCC
Q 027731          175 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS  212 (219)
Q Consensus       175 a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~~~~~~  212 (219)
                      +.+++||++|.|.++|+         .+||+|..+.+.
T Consensus       275 ~~~~~Ipi~i~nt~~p~---------~~GT~I~~~~~~  303 (304)
T d2cdqa1         275 AREGEIPVRVKNSYNPK---------APGTIITKTRDM  303 (304)
T ss_dssp             HHHHTCCEEEEETTSTT---------SCCEEEESCCCC
T ss_pred             HHHCCCcEEEecCCCCC---------CCCCEEeCCCCC
Confidence            99999999999999987         689999876543

>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=8.1e-28  Score=199.73  Aligned_cols=200  Identities=21%  Similarity=0.237  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCchHHHh-HHHhcc-----CCCCcChH---HHHHH-HHHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGNIFRG-ASAAGN-----SGLDRSSA---DYIGM-LATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~~~~~-~~~~~~-----~~~~~~~~---~~~~~-~~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.|++.|.++|||||||++.+. ....+.     .+.+.+..   +.+.+ .....|..+ ...|+++|+++.+
T Consensus        41 ~l~~dIa~L~~~G~~iVlVhGg~~~~~~~l~~~~i~~~~~~~~~~t~~~~~~~~~~~~~~~~n~~~-~~~l~~~g~~a~~  119 (282)
T d2btya1          41 AFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEI-VMNLNLHGGRAVG  119 (282)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHHH-HHHHHTTTCCEEE
T ss_pred             HHHHHHHHHHHCCCeEEEEECCCccchhhHHHcCCcceeccCccccchhhHHHHHHHHhchhhHHH-HHHHHhcCCCeee
Confidence            5899999999999999999999986543 333331     11122222   22222 233566665 4689999999988


Q ss_pred             ecccccc-----------ccc---c-hHHH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEEe
Q 027731           72 QTAFRMS-----------EVA---E-PYIR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLK  130 (219)
Q Consensus        72 ~~~~~~~-----------~~~---~-~~~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~lii  130 (219)
                      ++.....           +..   + ..++ +.+..+|+.|.|||+++.    .+ ..++++|.+|+.+|..++||+|+|
T Consensus       120 l~~~~~~~~~~~~~~~~~d~~~~g~~~~v~~~~i~~lL~~~~ipvi~~~~~~~~g~~~nl~~d~~aa~iA~~l~AdkLI~  199 (282)
T d2btya1         120 ICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLIL  199 (282)
T ss_dssp             EETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEECSSSCEEECCHHHHHHHHHHHHTCSEEEE
T ss_pred             eeccccceeEeccccccccccccccccccChHHHHHHHhCCCceeecCcccCCcceeeeccccchhHHHhhhcCCceeEE
Confidence            7654321           110   0 0122 345679999999999984    23 345899999999999999999999


Q ss_pred             eeccCccccCCCCCCCCCcccccccHHHHhhC-------CCCCchHHHHHHHHhCCCc-EEEEecCCCchHH-HHhcCCC
Q 027731          131 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGER  201 (219)
Q Consensus       131 ltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i~-~~l~g~~  201 (219)
                      +|||||+|++       ++++++++..|+..+       |+|..|+++|..|.++|++ |+|+||+.|+.|. ++|++++
T Consensus       200 ltdv~Gl~~d-------~~~i~~~~~~~~~~~~~~~~~tgGM~~Kl~aA~~A~~~GV~~v~I~~g~~~~~ll~elft~~g  272 (282)
T d2btya1         200 LTDVDGVLKD-------GKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKG  272 (282)
T ss_dssp             EESSSSCEET-------TEECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSC
T ss_pred             eccccceecC-------ccccccCCHHHHHHHHHcCCcCchHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhCCCC
Confidence            9999999963       478889988876542       4455699999999999997 9999999999875 6889999


Q ss_pred             CceEEecC
Q 027731          202 VGTLIGGT  209 (219)
Q Consensus       202 ~GT~i~~~  209 (219)
                      .||+|+++
T Consensus       273 ~GT~I~~~  280 (282)
T d2btya1         273 IGTMIKEL  280 (282)
T ss_dssp             SSEEECCC
T ss_pred             ceEEEEeC
Confidence            99999864

>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.94  E-value=4.1e-26  Score=191.90  Aligned_cols=200  Identities=18%  Similarity=0.199  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHCCCeEEEEECCch-HHHhHHHhcc-----CCCCcChHHHHH----HHHHHHHHHHHHHHHHhcCCCeeE
Q 027731            2 AIAREVASVTRLGIEVAIVVGGGN-IFRGASAAGN-----SGLDRSSADYIG----MLATVMNAIFLQATMESIGIPTRV   71 (219)
Q Consensus         2 ~la~~i~~l~~~g~~vviV~GgG~-~~~~~~~~~~-----~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~gi~a~~   71 (219)
                      +++++|+.|++.|+++|||||||+ +...+..++.     .+.+.+......    .++..++..+. ..+...+++...
T Consensus        31 ~~~~~Ia~L~~~G~~vVlVhGGgpqi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~  109 (313)
T d1e19a_          31 KTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALK-NELRKRGMEKKV  109 (313)
T ss_dssp             HHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCCCCE
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCCccccCCCcccccHHHHHHHHHHHHHHHHHHHH-HHHHhccccHHh
Confidence            478999999999999999999886 5454443321     233433322222    22233343433 455666665432


Q ss_pred             ecccc-----cc-----c------------------------------------cc----chHHH-HHHHHHHhCCCEEE
Q 027731           72 QTAFR-----MS-----E------------------------------------VA----EPYIR-RRAVRHLEKGRVVI  100 (219)
Q Consensus        72 ~~~~~-----~~-----~------------------------------------~~----~~~~~-~~~~~~l~~g~ipI  100 (219)
                      .+...     ..     +                                    +.    ...++ ..+..+++++.+|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~~~i~~~~~~~~i~v  189 (313)
T d1e19a_         110 VTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVI  189 (313)
T ss_dssp             EEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEE
T ss_pred             hHHHHhhhhhhHHHHhhccCceeehhhhhhHHHHHHhhcCceeeeccCccceeeccCCCceeEecccceeeccccchhhh
Confidence            21110     00     0                                    00    00112 23456889999998


Q ss_pred             EeCC------------CC-CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHHHHhhC-----
Q 027731          101 FAAG------------TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----  162 (219)
Q Consensus       101 v~g~------------~g-~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----  162 (219)
                      +.+.            +| ..++++|++|+.+|.+++||+|+|+|||||||+++|  +++++++++++.+|+.++     
T Consensus       190 l~~~~~~~v~~~~~~~~G~~~ninaD~lAa~vA~~l~Ad~LIlLTdv~Gv~~~~~--~~~~~~i~~l~~~e~~~li~~g~  267 (313)
T d1e19a_         190 ASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEELRKYYEEGH  267 (313)
T ss_dssp             CSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHHHHHHHTTC
T ss_pred             hccCCCCCccccCCCcCceEEecchhHHHHHHHHHHHHHHHHhccCCcceeccCC--CcccceeeeCCHHHHHHHhhCCC
Confidence            7752            12 346899999999999999999999999999998776  356799999999887753     


Q ss_pred             ---CCCCchHHHHHHHHhCCCc-EEEEecCCCchHHHHhcCCCCceEEec
Q 027731          163 ---DLSVMDMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLIGG  208 (219)
Q Consensus       163 ---g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i~~~l~g~~~GT~i~~  208 (219)
                         |+|.+|++||..|.+.|++ |+|.+   ++.+.++++|+ .||+|.|
T Consensus       268 ~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~---~~~i~~~l~g~-~GT~i~P  313 (313)
T d1e19a_         268 FKAGSMGPKVLAAIRFIEWGGERAIIAH---LEKAVEALEGK-TGTQVLP  313 (313)
T ss_dssp             SCTTTHHHHHHHHHHHHHHTCSEEEEEE---GGGHHHHHTTS-SSEEEEC
T ss_pred             cccCChHHHHHHHHHHHHhCCCEEEECC---hHHHHHHHCCC-CCCEEcC
Confidence               3456699999999998885 88865   56788999986 7999986

>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Enterococcus faecium [TaxId: 1352]

Probab=99.91  E-value=2.6e-24  Score=180.09  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=92.9

Q ss_pred             HHHHHhCCCEEEEeCC----------CC-CCccChHHHHHHHHHhcCCceEEeeeccCccccCCCCCCCCCcccccccHH
Q 027731           89 AVRHLEKGRVVIFAAG----------TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ  157 (219)
Q Consensus        89 ~~~~l~~g~ipIv~g~----------~g-~~~~~sD~~Aa~lA~~l~Ad~liiltDV~Gv~~~dP~~~~~a~~i~~i~~~  157 (219)
                      +...++.+.+|+..+.          +| ..++|+|++|+.+|.+++||+|+|+|||||||+++|+  |+.+++++++.+
T Consensus       174 i~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~ninaD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~--~~~~~i~~l~~~  251 (307)
T d1b7ba_         174 INTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCINYGK--PDEKQLTNVTVA  251 (307)
T ss_dssp             HHHHHHTTEEEECSGGGCEEEETTTTEECSCCCCHHHHHHHHHHHHTCSEEEEECSSSSCEETTTS--TTCEECSEEEHH
T ss_pred             hhhhhhcCceeeccCCccccccccCCCCcEEecchhHHHHHHHHHhhhhheeeccccCceeeCCCc--ccccccccCCHH
Confidence            4467888988876541          12 3469999999999999999999999999999998874  566889999998


Q ss_pred             HHhhC--------CCCCchHHHHHHHHhCCCc-EEEEecCCCchHHHHhcCCCCceEE
Q 027731          158 EVTSK--------DLSVMDMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLI  206 (219)
Q Consensus       158 e~~~~--------g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i~~~l~g~~~GT~i  206 (219)
                      |+.++        |+|.+|++||..|.++|++ ++|.++  ++.+.++++++.+||+|
T Consensus       252 e~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~~--~~~l~~l~~~~~~GT~I  307 (307)
T d1b7ba_         252 ELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS--LENLGSMSGDEIVGTVV  307 (307)
T ss_dssp             HHHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEEC--HHHHTTCSSCSCEEECC
T ss_pred             HHHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEECC--HHHHHHHHcCCCCCCCC
Confidence            87643        4456699999999999995 777764  56678899999999986

>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.8e-20  Score=151.46  Aligned_cols=198  Identities=18%  Similarity=0.159  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHCCCe-EEEEECCchHHHh-HHHhcc-----CCCCcChHHHH---HH-HHHHHHHHHHHHHHHhcCCCee
Q 027731            2 AIAREVASVTRLGIE-VAIVVGGGNIFRG-ASAAGN-----SGLDRSSADYI---GM-LATVMNAIFLQATMESIGIPTR   70 (219)
Q Consensus         2 ~la~~i~~l~~~g~~-vviV~GgG~~~~~-~~~~~~-----~~~~~~~~~~~---~~-~~~~~~~~l~~~~l~~~gi~a~   70 (219)
                      +++++|+.|++.|++ +|||||+|++.+. ..+++.     .+.+.......   .+ .....+..+ ...+...|.++.
T Consensus        22 ~~~~~ia~l~~~g~~~vvvvhG~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  100 (258)
T d1gs5a_          22 RLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTL-LAWAKKHQIAAV  100 (258)
T ss_dssp             HHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHHHHHHHHHTHHHHHH-HHHHHHTTCCEE
T ss_pred             HHHHHHHHHHHCCCceEEEECCCchhhhcchhhhccccccccccchhhHHHHHHHHHHHHHHHHHHH-HHHHhccCcccc
Confidence            689999999999976 8999999987543 334331     11111122222   22 223344444 357788899887


Q ss_pred             Eeccccccccc----c-hH--------HH-HHHHHHHhCCCEEEEeCC----CC-CCccChHHHHHHHHHhcCCceEEee
Q 027731           71 VQTAFRMSEVA----E-PY--------IR-RRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKA  131 (219)
Q Consensus        71 ~~~~~~~~~~~----~-~~--------~~-~~~~~~l~~g~ipIv~g~----~g-~~~~~sD~~Aa~lA~~l~Ad~liil  131 (219)
                      ...........    . .+        .+ ..+...++.+.+|++.+.    .+ ....++|.+|+.+|..++|+. +++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~a~~~a~~l~a~~-~~~  179 (258)
T d1gs5a_         101 GLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADL-ILL  179 (258)
T ss_dssp             EECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCEE-EEE
T ss_pred             ccccccccccccccccccccccccccccccchHHHHHhccccccccccccccCCcEEEechhhhhhhHHHHHHhhh-hhh
Confidence            65543221110    0 00        11 345578899999999873    22 345899999999999999985 567


Q ss_pred             eccCccccCCCCCCCCCcccccccHHHHhh-----C--CCCCchHHHHHHHHhCCCc-EEEEecCCCchHHHHhcCCCCc
Q 027731          132 TNVDGVYDDNPRRNPNARLLDTLTYQEVTS-----K--DLSVMDMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVG  203 (219)
Q Consensus       132 tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~-----~--g~~~~k~~aa~~a~~~gi~-v~I~~g~~~~~i~~~l~g~~~G  203 (219)
                      +|++|++..++.      ..+++...+...     .  |+|..|++||..|.++|++ |+|.||+.|+.|.++|+|+..|
T Consensus       180 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~Gv~~v~I~~g~~~~~L~~l~~g~~~G  253 (258)
T d1gs5a_         180 SDVSGILDGKGQ------RIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMG  253 (258)
T ss_dssp             ESSSSCBCTTSC------BCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSS
T ss_pred             cccccccccccc------cccccchHHHHHHHhCCcccchHHHHHHHHHHHHHcCCCEEEEEeCCCchHHHHHhcCCCCc
Confidence            899999987653      333444433322     2  4455599999999999996 9999999999999999999999


Q ss_pred             eEEe
Q 027731          204 TLIG  207 (219)
Q Consensus       204 T~i~  207 (219)
                      |+|.
T Consensus       254 T~i~  257 (258)
T d1gs5a_         254 TRIL  257 (258)
T ss_dssp             EEEC
T ss_pred             eEEe
Confidence            9985