Citrus Sinensis ID: 027748

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MASIRSFGKWTVDHQICPQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEGK
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccccccEEcccccEEEEEEcccccccccccEEEEEEEEEEcccEEEEccccccccccccccccEEEEcccccccccccEEEccccccccccccccccccHHHHHHccccccEEEEEEccccccccccccccccccEEEEEEEEEEEcccccc
cccEccHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHccEcccccEEEEEEEccccccccccEEEEEEEEEEEEEEEcccccccEEcccccccccEEEEcccccccHHHHHcccEEcccccccccccccccEEEEEcccccccEEEEEEcccHccccccccccccccEEEEEEEEEcccccccc
masirsfgkwtvdhqicpqhtTIQAKQAVVSIPISRRAAAILISslpfsvislpkcseARERRnkkaipledyhttsdglkyydivegkgpvaqkgstvQVHFDCIFRGITAVSSRESKLlagnrsiaepyefkvggppgkerkrefvdnqnglfsaqaapkpppamysvtegmkvggkrtvivppeagydkkrmneippgatfELNIELlqvkppegk
masirsfgkwtvdhqiCPQHTTIQAKQAVVSIPISRRAAAILisslpfsvislpkcsearerrnkkaipledyhttsdGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLlagnrsiaepyefkvggppgKERKREFVDNQNGLfsaqaapkpppAMYSVTegmkvggkrtvivppeagydkkrmneippgatfelniellqvkppegk
MASIRSFGKWTVDHQICPQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEGK
*****SFGKWTVDHQICPQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKC***********IPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVS*******************************************************************VI********************FELNIEL*********
*************************************AAAILISSLPFSV************************TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVS***********S*AEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELL*VKP****
MASIRSFGKWTVDHQICPQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEGK
********KW*VD******************IPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKP****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASIRSFGKWTVDHQICPQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query219 2.2.26 [Sep-21-2011]
Q9LM71232 Peptidyl-prolyl cis-trans yes no 0.986 0.931 0.684 2e-74
Q9SR70230 Peptidyl-prolyl cis-trans no no 0.611 0.582 0.405 6e-21
Q9LYR5256 Peptidyl-prolyl cis-trans no no 0.497 0.425 0.310 5e-05
P28725124 FK506-binding protein OS= N/A no 0.474 0.838 0.294 0.0001
Q5R941211 Peptidyl-prolyl cis-trans yes no 0.191 0.199 0.476 0.0005
Q9NWM8211 Peptidyl-prolyl cis-trans yes no 0.191 0.199 0.476 0.0005
Q9FLB3143 Peptidyl-prolyl cis-trans no no 0.191 0.293 0.476 0.0005
>sp|Q9LM71|FKB18_ARATH Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic OS=Arabidopsis thaliana GN=FKBP18 PE=1 SV=2 Back     alignment and function desciption
 Score =  278 bits (711), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/228 (68%), Positives = 181/228 (79%), Gaps = 12/228 (5%)

Query: 1   MASIRSFGKWTVD-HQICPQHTTI-QAKQA-------VVSIPISRR-AAAILISSLPFS- 49
           MASI S  +W  + H   P+ T+I +A Q+         S+PISRR A+ IL+SS+P + 
Sbjct: 1   MASISSLHRWASNQHSRLPRITSISEADQSRPINQVVAFSVPISRRDASIILLSSIPLTS 60

Query: 50  -VISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFR 108
             +  P  SEARERR++K IPLE+Y T  +GLK+YDI EGKGPVA +GST QVHFDC +R
Sbjct: 61  FFVLTPSSSEARERRSRKVIPLEEYSTGPEGLKFYDIEEGKGPVATEGSTAQVHFDCRYR 120

Query: 109 GITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMY 168
            ITA+S+RESKLLAGNRSIA+PYEFKVG  PGKERKREFVDN NGLFSAQAAPKPPPAMY
Sbjct: 121 SITAISTRESKLLAGNRSIAQPYEFKVGSTPGKERKREFVDNPNGLFSAQAAPKPPPAMY 180

Query: 169 SVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPP 216
            +TEGMKVGGKRTVIVPPEAGY +K MNEIPPGATFELNIELL+V PP
Sbjct: 181 FITEGMKVGGKRTVIVPPEAGYGQKGMNEIPPGATFELNIELLRVTPP 228
PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8
>sp|Q9SR70|FK164_ARATH Peptidyl-prolyl cis-trans isomerase FKBP16-4, chloroplastic OS=Arabidopsis thaliana GN=FKBP16-4 PE=1 SV=1 Back     alignment and function description
>sp|Q9LYR5|FKB19_ARATH Peptidyl-prolyl cis-trans isomerase FKBP19, chloroplastic OS=Arabidopsis thaliana GN=FKBP19 PE=1 SV=1 Back     alignment and function description
>sp|P28725|FKBP_STRAQ FK506-binding protein OS=Streptomyces anulatus GN=fkbP PE=1 SV=1 Back     alignment and function description
>sp|Q5R941|FKB14_PONAB Peptidyl-prolyl cis-trans isomerase FKBP14 OS=Pongo abelii GN=FKBP14 PE=2 SV=1 Back     alignment and function description
>sp|Q9NWM8|FKB14_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP14 OS=Homo sapiens GN=FKBP14 PE=1 SV=1 Back     alignment and function description
>sp|Q9FLB3|FK153_ARATH Peptidyl-prolyl cis-trans isomerase FKBP15-3 OS=Arabidopsis thaliana GN=FKBP15-3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
297745584222 unnamed protein product [Vitis vinifera] 0.995 0.981 0.753 1e-82
357467145228 hypothetical protein MTR_3g115970 [Medic 0.844 0.811 0.780 2e-79
147815138 682 hypothetical protein VITISV_024651 [Viti 0.968 0.310 0.732 4e-78
359491859187 PREDICTED: probable FKBP-type peptidyl-p 0.853 1.0 0.824 2e-76
449455631227 PREDICTED: peptidyl-prolyl cis-trans iso 0.922 0.889 0.753 3e-76
388514903243 unknown [Lotus japonicus] 0.853 0.769 0.719 2e-75
255539292219 FK506 binding protein, putative [Ricinus 0.995 0.995 0.713 8e-73
15218039232 peptidylprolyl isomerase [Arabidopsis th 0.986 0.931 0.684 1e-72
224083348209 predicted protein [Populus trichocarpa] 0.904 0.947 0.726 1e-72
8886936233 F2D10.32 [Arabidopsis thaliana] 0.986 0.927 0.681 3e-71
>gi|297745584|emb|CBI40749.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 168/223 (75%), Positives = 188/223 (84%), Gaps = 5/223 (2%)

Query: 1   MASIRSFGKWTVDHQIC-PQHTTIQA---KQAVVSIPISRRAAAILISSLPFSVISLPKC 56
           MASIRS  +W VD+ +  P  + IQ    K  ++ +PISRR A ILIS LPFSVIS P  
Sbjct: 1   MASIRSIHRWDVDNLLLTPTSSAIQTQPPKHVILPMPISRRCA-ILISVLPFSVISQPHS 59

Query: 57  SEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSR 116
           S+ARERR KK IPLEDY T+ DGLKYYD+V+G GPVA+KGS+VQVHFDCI+R ITAVSSR
Sbjct: 60  SDARERRTKKNIPLEDYLTSPDGLKYYDVVDGNGPVAEKGSSVQVHFDCIYRSITAVSSR 119

Query: 117 ESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKV 176
           ESKLLAGNR IA+PY FKVG PPGKERKREFVDN NGLFSAQAAPKPPPA+YS+TEGMKV
Sbjct: 120 ESKLLAGNRIIAQPYVFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPPALYSITEGMKV 179

Query: 177 GGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEGK 219
           GGKRTVIVPPEAGY +K M+EIPPGATFELN+ELLQV PPEGK
Sbjct: 180 GGKRTVIVPPEAGYGQKGMSEIPPGATFELNVELLQVLPPEGK 222

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357467145|ref|XP_003603857.1| hypothetical protein MTR_3g115970 [Medicago truncatula] gi|355492905|gb|AES74108.1| hypothetical protein MTR_3g115970 [Medicago truncatula] Back     alignment and taxonomy information
>gi|147815138|emb|CAN59776.1| hypothetical protein VITISV_024651 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359491859|ref|XP_002273060.2| PREDICTED: probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455631|ref|XP_004145556.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic-like [Cucumis sativus] gi|449530267|ref|XP_004172117.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388514903|gb|AFK45513.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|255539292|ref|XP_002510711.1| FK506 binding protein, putative [Ricinus communis] gi|223551412|gb|EEF52898.1| FK506 binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15218039|ref|NP_173504.1| peptidylprolyl isomerase [Arabidopsis thaliana] gi|18203241|sp|Q9LM71.2|FKB18_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic; Short=PPIase FKBP18; AltName: Full=FK506-binding protein 18; Short=AtFKBP18; AltName: Full=Immunophilin FKBP18; AltName: Full=Rotamase; Flags: Precursor gi|26449905|dbj|BAC42074.1| unknown protein [Arabidopsis thaliana] gi|28827556|gb|AAO50622.1| putative FKBP-type peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] gi|332191905|gb|AEE30026.1| peptidylprolyl isomerase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224083348|ref|XP_002306991.1| predicted protein [Populus trichocarpa] gi|222856440|gb|EEE93987.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|8886936|gb|AAF80622.1|AC069251_15 F2D10.32 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query219
TAIR|locus:2030502232 AT1G20810 "AT1G20810" [Arabido 0.986 0.931 0.692 8.1e-76
UNIPROTKB|Q0E4I6234 Os02g0117600 "Peptidyl-prolyl 0.831 0.777 0.717 7.4e-66
TAIR|locus:2100063230 AT3G10060 "AT3G10060" [Arabido 0.196 0.186 0.674 1.3e-21
UNIPROTKB|A8JC71228 FKB16-4 "Peptidyl-prolyl cis-t 0.525 0.504 0.360 6e-20
UNIPROTKB|Q89SJ5154 fbp "Peptidyl-prolyl cis-trans 0.187 0.266 0.547 1.7e-11
UNIPROTKB|Q9RJ63123 Q9RJ63 "Peptidyl-prolyl cis-tr 0.191 0.341 0.418 7e-09
UNIPROTKB|Q74AS7156 GSU2274 "Peptidyl-prolyl cis-t 0.182 0.256 0.536 8.2e-09
TIGR_CMR|GSU_2274156 GSU_2274 "FKBP-type peptidyl-p 0.182 0.256 0.536 8.2e-09
UNIPROTKB|Q7NMC5161 glr0841 "Peptidyl-prolyl cis-t 0.187 0.254 0.476 9.6e-09
UNIPROTKB|P73037201 ytfC "Peptidyl-prolyl cis-tran 0.187 0.203 0.476 1.9e-08
TAIR|locus:2030502 AT1G20810 "AT1G20810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 158/228 (69%), Positives = 183/228 (80%)

Query:     1 MASIRSFGKWTVD-HQICPQHTTI-QAKQA-----VV--SIPISRR-AAAILISSLPFS- 49
             MASI S  +W  + H   P+ T+I +A Q+     VV  S+PISRR A+ IL+SS+P + 
Sbjct:     1 MASISSLHRWASNQHSRLPRITSISEADQSRPINQVVAFSVPISRRDASIILLSSIPLTS 60

Query:    50 -VISLPKCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFR 108
               +  P  SEARERR++K IPLE+Y T  +GLK+YDI EGKGPVA +GST QVHFDC +R
Sbjct:    61 FFVLTPSSSEARERRSRKVIPLEEYSTGPEGLKFYDIEEGKGPVATEGSTAQVHFDCRYR 120

Query:   109 GITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMY 168
              ITA+S+RESKLLAGNRSIA+PYEFKVG  PGKERKREFVDN NGLFSAQAAPKPPPAMY
Sbjct:   121 SITAISTRESKLLAGNRSIAQPYEFKVGSTPGKERKREFVDNPNGLFSAQAAPKPPPAMY 180

Query:   169 SVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPP 216
              +TEGMKVGGKRTVIVPPEAGY +K MNEIPPGATFELNIELL+V PP
Sbjct:   181 FITEGMKVGGKRTVIVPPEAGYGQKGMNEIPPGATFELNIELLRVTPP 228
GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA
GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA
GO:0005528 "FK506 binding" evidence=ISS;IBA
GO:0006457 "protein folding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA
GO:0016020 "membrane" evidence=IBA
GO:0018208 "peptidyl-proline modification" evidence=IBA
GO:0031977 "thylakoid lumen" evidence=IDA
UNIPROTKB|Q0E4I6 Os02g0117600 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2100063 AT3G10060 "AT3G10060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8JC71 FKB16-4 "Peptidyl-prolyl cis-trans isomerase" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
UNIPROTKB|Q89SJ5 fbp "Peptidyl-prolyl cis-trans isomerase" [Bradyrhizobium japonicum USDA 110 (taxid:224911)] Back     alignment and assigned GO terms
UNIPROTKB|Q9RJ63 Q9RJ63 "Peptidyl-prolyl cis-trans isomerase" [Streptomyces coelicolor A3(2) (taxid:100226)] Back     alignment and assigned GO terms
UNIPROTKB|Q74AS7 GSU2274 "Peptidyl-prolyl cis-trans isomerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2274 GSU_2274 "FKBP-type peptidyl-prolyl cis-trans isomerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q7NMC5 glr0841 "Peptidyl-prolyl cis-trans isomerase" [Gloeobacter violaceus PCC 7421 (taxid:251221)] Back     alignment and assigned GO terms
UNIPROTKB|P73037 ytfC "Peptidyl-prolyl cis-trans isomerase" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LM71FKB18_ARATH5, ., 2, ., 1, ., 80.68420.98630.9310yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002914001
RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8; (222 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
pfam0025494 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t 6e-13
COG0545205 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans 9e-13
PRK10902269 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis- 1e-05
>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase Back     alignment and domain information 
 Score = 62.3 bits (152), Expect = 6e-13
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 33/121 (27%)

Query: 93  AQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQN 152
           A+KG TV VH+                +   ++   +P+EF +G         + +    
Sbjct: 5   AKKGDTVTVHYTGKLED--------GTVFDSSKDRGKPFEFTLG-------SGQVI---- 45

Query: 153 GLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE--IPPGATFELNIEL 210
                       P       GMKVG KR + +PPE  Y ++ +    IPP AT    +EL
Sbjct: 46  ------------PGWDEGLLGMKVGEKRKLTIPPELAYGEEGLAGGVIPPNATLVFEVEL 93

Query: 211 L 211
           L
Sbjct: 94  L 94

Length = 94
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 219
COG0545205 FkpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.97
TIGR03516177 ppisom_GldI peptidyl-prolyl isomerase, gliding mot 99.95
KOG0552226 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.94
KOG0544108 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.94
PRK11570206 peptidyl-prolyl cis-trans isomerase; Provisional 99.93
KOG0549188 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.92
PRK10902269 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.92
PF0025494 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer 99.83
PRK15095156 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.61
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 99.61
PRK10737196 FKBP-type peptidyl-prolyl cis-trans isomerase; Pro 99.45
COG1047174 SlpA FKBP-type peptidyl-prolyl cis-trans isomerase 99.45
KOG0543 397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.95
TIGR00115 408 tig trigger factor. Trigger factor is a ribosome-a 98.9
PRK01490 435 tig trigger factor; Provisional 98.78
COG0544 441 Tig FKBP-type peptidyl-prolyl cis-trans isomerase 98.44
KOG0545 329 consensus Aryl-hydrocarbon receptor-interacting pr 97.81
KOG0549 188 consensus FKBP-type peptidyl-prolyl cis-trans isom 97.41
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.97  E-value=3e-30  Score=214.95  Aligned_cols=117  Identities=37%  Similarity=0.617  Sum_probs=107.3

Q ss_pred             cccCCCCCCeeeCCCceEEEEEecCCCCCCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcc
Q 027748           64 NKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKE  142 (219)
Q Consensus        64 ~k~~~~~~~~~~~~sGl~y~~l~~G~G~~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~  142 (219)
                      ...+.......++++|++|++++.|+|+.|+.+|.|.+||++++ ||++||||+++         ++|+.|.+|.     
T Consensus        87 ~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~r---------g~p~~f~l~~-----  152 (205)
T COG0545          87 LEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDR---------GQPAEFPLGG-----  152 (205)
T ss_pred             HhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCcccccccc---------CCCceeecCC-----
Confidence            34455566788999999999999999999999999999999986 99999999986         9999999984     


Q ss_pred             cccccccccCcccccCCCCCCCCchhhhhhcCccccEEEEEecCCCCCCCCCCC-CCCCCCeEEEEEEEEeec
Q 027748          143 RKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EIPPGATFELNIELLQVK  214 (219)
Q Consensus       143 ~~~~~~~~~~g~~~~~~~~~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~-~Ip~~stL~f~IeLl~v~  214 (219)
                                          +|+||.++|.+|++|++|+++|||++|||.+|.+ .||||++|+|+|||++|.
T Consensus       153 --------------------vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~  205 (205)
T COG0545         153 --------------------VIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK  205 (205)
T ss_pred             --------------------eeehHHHHHhhCCCCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence                                5999999999999999999999999999999965 499999999999999984

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated Back     alignment and domain information
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5 Back     alignment and domain information
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional Back     alignment and domain information
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00115 tig trigger factor Back     alignment and domain information
>PRK01490 tig trigger factor; Provisional Back     alignment and domain information
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
3uqa_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 4e-09
4dz3_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 1e-08
3uqb_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 1e-08
2y78_A133 Crystal Structure Of Bpss1823, A Mip-Like Chaperone 1e-08
2ke0_A117 Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso 2e-08
3uf8_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 2e-08
4ggq_C209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 2e-08
3vaw_A209 Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C 2e-08
4dz2_A113 Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is 1e-06
4dip_A125 Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran 4e-05
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure 
Iteration: 1

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 60/140 (42%), Gaps = 32/140 (22%)
Query: 75  TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
           TT  GLKY D+ EG G  A+ G TV VH+             + +    ++   +P+EF 
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--------DGQKFDSSKDRNDPFEFV 152
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKR 194
           +GG    +   E V                       +GMKVGG R + +PP+ GY  + 
Sbjct: 153 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGARG 189
Query: 195 MNE-IPPGATFELNIELLQV 213
               IPP AT    +ELL V
Sbjct: 190 AGGVIPPNATLVFEVELLDV 209
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133 Back     alignment and structure
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117 Back     alignment and structure
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209 Back     alignment and structure
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209 Back     alignment and structure
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113 Back     alignment and structure
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query219
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 2e-15
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 4e-15
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 1e-14
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 1e-14
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 2e-14
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 4e-14
1fd9_A213 Protein (macrophage infectivity potentiator prote; 8e-14
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 8e-14
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 2e-13
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 2e-12
1jvw_A167 Macrophage infectivity potentiator; chagas disease 2e-12
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 6e-12
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 7e-12
2ppn_A107 FK506-binding protein 1A; high resolution protein 1e-11
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 2e-11
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 2e-11
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 2e-11
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 3e-11
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 3e-06
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 1e-05
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 4e-11
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 2e-10
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 3e-10
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 4e-10
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 2e-09
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 2e-07
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 2e-08
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 3e-08
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 3e-05
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129 Back     alignment and structure
 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 37/162 (22%), Positives = 55/162 (33%), Gaps = 57/162 (35%)

Query: 71  EDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVH----------FDCIFRGITAVSSRESKL 120
            ++  +  GL + D V G GP A KG  ++ H          FD         SS     
Sbjct: 5   CEFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFD---------SSYNRG- 54

Query: 121 LAGNRSIAEPYEFKVGGP---PGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVG 177
                   +P  F++G      G ++         G+  +   P            M  G
Sbjct: 55  --------KPLTFRIGVGEVIKGWDQ---------GILGSDGIPP-----------MLTG 86

Query: 178 GKRTVIVPPEAGY------DKKRMNEIPPGATFELNIELLQV 213
           GKRT+ +PPE  Y       K     IPP +    +IE +  
Sbjct: 87  GKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125 Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224 Back     alignment and structure
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133 Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209 Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180 Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213 Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134 Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219 Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113 Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167 Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130 Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128 Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107 Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144 Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129 Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356 Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119 Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135 Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102 Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280 Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
2y78_A133 Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, 99.94
4dip_A125 Peptidyl-prolyl CIS-trans isomerase FKBP14; struct 99.94
1yat_A113 FK506 binding protein; HET: FK5; 2.50A {Saccharomy 99.93
1jvw_A167 Macrophage infectivity potentiator; chagas disease 99.93
3kz7_A119 FK506-binding protein 3; FKPB ppiase rapamycin, is 99.93
2lgo_A130 FKBP; infectious disease, isomerase, giardiasis, s 99.93
2ppn_A107 FK506-binding protein 1A; high resolution protein 99.93
1u79_A129 FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T 99.93
3oe2_A219 Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, 99.93
3o5q_A128 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.93
1fd9_A213 Protein (macrophage infectivity potentiator prote; 99.93
3o5e_A144 Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 99.92
2vn1_A129 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR 99.92
2lkn_A165 AH receptor-interacting protein; FKBP-type domain, 99.92
3uf8_A209 Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- 99.92
2f4e_A180 ATFKBP42; FKBP-like, alpha-beta, signaling protein 99.92
3b7x_A134 FK506-binding protein 6; isomerase, repeat, rotama 99.92
1q6h_A224 FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; 99.92
1r9h_A135 FKB-6, FK506 binding protein family; structural ge 99.92
2jwx_A157 FKBP38NTD, FK506-binding protein 8 variant; apopto 99.92
2d9f_A135 FK506-binding protein 8 variant; FKBP, rapamycin, 99.9
2awg_A118 38 kDa FK-506 binding protein; FKBP-type, ppiase, 99.9
2pbc_A102 FK506-binding protein 2; endoplasmic reticulum, is 99.88
1q1c_A 280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.87
2if4_A 338 ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, 99.84
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.84
3jxv_A 356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.84
3jxv_A356 70 kDa peptidyl-prolyl isomerase; FKBP- binding do 99.83
1q1c_A280 FK506-binding protein 4; rotamase, TPR repeat, nuc 99.79
1hxv_A113 Trigger factor; FKBP fold, ppiase, chaperone; NMR 99.72
4dt4_A169 FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; 99.69
2k8i_A171 SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, 99.67
2kr7_A151 FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; 99.65
3pr9_A157 FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB 99.65
3prb_A231 FKBP-type peptidyl-prolyl CIS-trans isomerase; cha 99.63
2kfw_A196 FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD 99.62
1p5q_A 336 FKBP52, FK506-binding protein 4; isomerase; 2.80A 99.6
1ix5_A151 FKBP; ppiase, isomerase; NMR {Methanothermococcust 99.5
3cgm_A158 SLYD, peptidyl-prolyl CIS-trans isomerase; chapero 99.47
1w26_A 432 Trigger factor, TF; chaperone, protein folding, ri 99.37
1kt0_A 457 FKBP51, 51 kDa FK506-binding protein; FKBP-like pp 99.23
1t11_A 392 Trigger factor, TF; helix-turn-helix, four-helix-b 99.2
3gty_X 433 Trigger factor, TF; chaperone-client complex, cell 97.88
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Back     alignment and structure
Probab=99.94  E-value=5.1e-26  Score=178.83  Aligned_cols=114  Identities=38%  Similarity=0.616  Sum_probs=104.7

Q ss_pred             CCCCCeeeCCCceEEEEEecCCCCCCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccc
Q 027748           68 IPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKRE  146 (219)
Q Consensus        68 ~~~~~~~~~~sGl~y~~l~~G~G~~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~  146 (219)
                      .....+.++++|++|+++++|+|..++.||.|++||++++ ||++|+++++.         .+|+.|.+|.+        
T Consensus        18 ~~~~~~~~~~~gl~~~~l~~G~G~~~~~gd~V~v~Y~g~~~dG~~fdss~~~---------~~p~~f~lG~g--------   80 (133)
T 2y78_A           18 GSHMTVVTTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDR---------NDPFAFVLGGG--------   80 (133)
T ss_dssp             TTTTCCEECTTSCEEEEEECCSSCBCCTTSEEEEEEEEEETTSCEEEETTTT---------TCCEEEETTSS--------
T ss_pred             ccCCCcEECCCCEEEEEEEcCCCCCCCCCCEEEEEEEEEECCCCEEeccCcC---------CCCEEEEeCCC--------
Confidence            3445688899999999999999999999999999999997 99999999864         68999999986        


Q ss_pred             cccccCcccccCCCCCCCCchhhhhhcCccccEEEEEecCCCCCCCCCCC-CCCCCCeEEEEEEEEee
Q 027748          147 FVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EIPPGATFELNIELLQV  213 (219)
Q Consensus       147 ~~~~~~g~~~~~~~~~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~-~Ip~~stL~f~IeLl~v  213 (219)
                                     ++|+||+++|.+|++|++++|.|||+++||..+.. .||||++|+|+|||++|
T Consensus        81 ---------------~vi~G~eeaL~gmk~Ge~~~v~ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A           81 ---------------MVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             ---------------SSCHHHHHHSTTCBTTCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             ---------------ChhHHHHHHHcCCCCCCEEEEEECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence                           67999999999999999999999999999998875 49999999999999986
>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Back     alignment and structure
>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Back     alignment and structure
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Back     alignment and structure
>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A* Back     alignment and structure
>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Back     alignment and structure
>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Back     alignment and structure
>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Back     alignment and structure
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0 Back     alignment and structure
>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Back     alignment and structure
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Back     alignment and structure
>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Back     alignment and structure
>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Back     alignment and structure
>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens} Back     alignment and structure
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A* Back     alignment and structure
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Back     alignment and structure
>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Back     alignment and structure
>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Back     alignment and structure
>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Back     alignment and structure
>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Back     alignment and structure
>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Back     alignment and structure
>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Back     alignment and structure
>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1 Back     alignment and structure
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Back     alignment and structure
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Back     alignment and structure
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Back     alignment and structure
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A Back     alignment and structure
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Back     alignment and structure
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Back     alignment and structure
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Back     alignment and structure
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Back     alignment and structure
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Back     alignment and structure
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5 Back     alignment and structure
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Back     alignment and structure
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A Back     alignment and structure
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 219
d1u79a_125 d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha 2e-15
d1q6ha_210 d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase 4e-11
d1r9ha_118 d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd 7e-10
d1q1ca1120 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu 1e-09
d1fd9a_204 d.26.1.1 (A:) Macrophage infectivity potentiator p 4e-09
d2ppna1107 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12) 6e-09
d1yata_113 d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas 2e-08
d1kt1a2111 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo 7e-08
d1pbka_116 d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 2e-07
d1kt1a3115 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M 3e-07
d1q1ca2117 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H 2e-06
d1jvwa_160 d.26.1.1 (A:) Macrophage infectivity potentiator p 2e-04
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 68.0 bits (165), Expect = 2e-15
 Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 31/148 (20%)

Query: 72  DYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPY 131
           ++  +  GL + D V G GP A KG  ++ H+           S        + +  +P 
Sbjct: 2   EFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHYVGKLENGKVFDS--------SYNRGKPL 53

Query: 132 EFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYD 191
            F++G     +   + +   +G+                   M  GGKRT+ +PPE  Y 
Sbjct: 54  TFRIGVGEVIKGWDQGILGSDGI-----------------PPMLTGGKRTLRIPPELAYG 96

Query: 192 KKRM------NEIPPGATFELNIELLQV 213
            +          IPP +    +IE +  
Sbjct: 97  DRGAGCKGGSCLIPPASVLLFDIEYIGK 124
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210 Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118 Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204 Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113 Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111 Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115 Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query219
d1q6ha_210 Peptidyl-prolyl cis-trans isomerase FkpA {Escheric 99.96
d1fd9a_204 Macrophage infectivity potentiator protein (MIP) { 99.95
d2ppna1107 FK-506 binding protein (FKBP12), an immunophilin { 99.95
d1r9ha_118 FKB-6, N-terminal domain {Caenorhabditis elegans [ 99.95
d1yata_113 Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc 99.94
d1q1ca1120 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.94
d1u79a_125 FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 99.94
d1kt1a2111 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.94
d1jvwa_160 Macrophage infectivity potentiator protein (MIP) { 99.93
d1pbka_116 FKBP25 {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1kt1a3115 FKBP51, N-terminal domains {Monkey (Saimiri bolivi 99.91
d1q1ca2117 FKBP52, N-terminal domains {Human (Homo sapiens) [ 99.89
d1ix5a_151 Archaeal FKBP {Archaeon Methanococcus thermolithot 99.59
d1hxva_85 Trigger factor PPIase domain {Mycoplasma genitaliu 99.58
d1l1pa_106 Trigger factor PPIase domain {Escherichia coli [Ta 99.01
d1t11a3113 Trigger factor PPIase domain {Vibrio cholerae [Tax 98.9
>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.1e-29  Score=207.83  Aligned_cols=114  Identities=32%  Similarity=0.523  Sum_probs=106.4

Q ss_pred             CCCCCCeeeCCCceEEEEEecCCCCCCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCccccc
Q 027748           67 AIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKR  145 (219)
Q Consensus        67 ~~~~~~~~~~~sGl~y~~l~~G~G~~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~  145 (219)
                      +...+++.++++|++|+++++|+|+.|..||.|.+||++++ ||++|++|+..         +.|+.|.+|.        
T Consensus        96 ~~~~~~v~~~~sGl~y~v~~~G~G~~p~~gd~v~v~y~g~l~dG~~fd~s~~~---------~~p~~~~~~~--------  158 (210)
T d1q6ha_          96 FAKEKGVKTSSTGLVYQVVEAGKGEAPKDSDTVVVNYKGTLIDGKEFDNSYTR---------GEPLSFRLDG--------  158 (210)
T ss_dssp             HHHSTTEEECTTSCEEEEEECCSSCCCCTTCEEEEEEEEEETTSCEEEEGGGG---------TSCEEEEGGG--------
T ss_pred             hcccCceEEccCceEEEEeeCCCCCCCCCCceEEEEEEEEEcCCCEEeecccC---------CCcceeccCc--------
Confidence            34456789999999999999999999999999999999986 99999999876         8999999974        


Q ss_pred             ccccccCcccccCCCCCCCCchhhhhhcCccccEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEeec
Q 027748          146 EFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVK  214 (219)
Q Consensus       146 ~~~~~~~g~~~~~~~~~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~~Ip~~stL~f~IeLl~v~  214 (219)
                                       +|+||+++|.+|++|++++++|||++|||..|.+.||||++|+|+|||++|+
T Consensus       159 -----------------vi~g~~e~l~~m~~G~k~~~~iP~~laYG~~g~~~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         159 -----------------VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             -----------------SCHHHHHHGGGSCTTCEEEEEECGGGTTTTTCBTTBCTTCCEEEEEEEEEEC
T ss_pred             -----------------cchhHHHHHhhccCCCEEEEEECHHHCcCCCCCCCCCcCCcEEEEEEEEEEC
Confidence                             5999999999999999999999999999999998899999999999999985
>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Back     information, alignment and structure
>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Back     information, alignment and structure
>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Back     information, alignment and structure
>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure