Citrus Sinensis ID: 027756

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MMSMMRVMVLERIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGNINGST
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEccEEEEcccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEccccEEEEEEccEEEEEccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccccccEEcccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEccccccccc
Coil and Loop (DISEMBL)
MMSMMRVMVLERIgdqltlsfqgqvyvfdsvSPEKVQAVLLLLggrevpsttpaipiannqnnRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRnkgqftsaksnnedsasaisswgsnqswagdvngsqnqdivcrhcgisekstpmmrrgpegprtlcnacglmwankgtlrdlskaapqagqtsslnkneengtlKAEQVIRAVGNINGST
Flexible Loop (DISEMBL)
MMSMMRVMVLERIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPsttpaipiannqnnrrlaslirfrekrkernfekkirytvrkevalrmqrnkgqftsaksnneDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGIsekstpmmrrgpEGPRTLCNACGLMWANKGTLRDLSKAAPqagqtsslnkneengtlkaeqviravgningst
Low Complexity Region (SEG)
MMSMMRVMVLERIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRRLASLirfrekrkernfekkirYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGNINGST
Disordered region (IsUnstruct)
*****RVMVLERIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPI********LASLIRF***********KIRYTVR***********************************************DIVCRHCGI****************TLCNACGLMWANKGTL*****************************************
Disordered Region (DISOPRED)
*******************SFQGQVYVFDSVSPE****************************************************************************************SNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWA**********************************************
Disordered Region (DISEMBL)
MMSMMRVMVLERIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKG*******************GSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDL*************NKNEENGTLKAEQVIRAVGNINGST
Disordered Region (DISPRO)
**SMMRVMVLERIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVP**************RRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN************************************QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKG*******************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMSMMRVMVLERIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGNINGST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q8H1G0	302	GATA transcription factor	yes	no	0.917	0.665	0.689	3e-81
Q8GXL7	297	GATA transcription factor	no	no	0.917	0.676	0.688	4e-80
Q9LRH6	309	GATA transcription factor	no	no	0.735	0.521	0.546	4e-47
A2YQ93	742	Two-component response re	N/A	no	0.200	0.059	0.545	6e-07
Q0D3B6	742	Two-component response re	no	no	0.200	0.059	0.545	6e-07
Q00858	457	Cutinase gene palindrome-	N/A	no	0.205	0.098	0.489	1e-06
B0G188	695	GATA zinc finger domain-c	yes	no	0.155	0.048	0.555	4e-06
O13415	866	Nitrogen regulatory prote	no	no	0.520	0.131	0.349	4e-06
Q75JZ0	519	GATA zinc finger domain-c	no	no	0.246	0.104	0.409	5e-06
Q940T9	362	Zinc finger protein CONST	no	no	0.278	0.168	0.437	5e-06

>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1

 Score =  301 bits (770), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 149/216 (68%), Positives = 167/216 (77%), Gaps = 15/216 (6%)

Query: 14  GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNR--------- 64
           GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P    + +QNNR         
Sbjct: 81  GDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTPQ 140

Query: 65  ------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAI 118
                 RLASL+RFREKRK RNF+KKIRYTVRKEVALRMQRNKGQFTSAKSNN+++ASA 
Sbjct: 141 RFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAG 200

Query: 119 SSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178
           SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP GPRTLCNACGLMWANKG  
Sbjct: 201 SSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAF 260

Query: 179 RDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGN 214
           RDLSKA+PQ  Q   LNKNE+       Q++  V N
Sbjct: 261 RDLSKASPQTAQNLPLNKNEDANLETDHQIMITVAN 296

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score =  297 bits (760), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 150/218 (68%), Positives = 168/218 (77%), Gaps = 17/218 (7%)

Query: 14  GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNR--------- 64
           GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P    + +QNNR         
Sbjct: 77  GDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQ 136

Query: 65  ------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAI 118
                 RLASL+RFREKRK RNF+K IRYTVRKEVALRMQR KGQFTSAKS+N+DS S  
Sbjct: 137 RLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTG 196

Query: 119 SSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178
           S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GPRTLCNACGLMWANKGTL
Sbjct: 197 SDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTL 256

Query: 179 RDLSKA-APQAGQTSSLNKNEENGTLKAEQVIRAVGNI 215
           RDLSK   PQ  Q  SLNKNE+   L+A+Q++   G+I
Sbjct: 257 RDLSKVPPPQTPQHLSLNKNED-ANLEADQMMEVTGDI 293

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2

 Score =  187 bits (476), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/183 (54%), Positives = 121/183 (66%), Gaps = 22/183 (12%)

Query: 15  DQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI-PIANNQNN---------- 63
           +QLT+SF+GQVYVFD+V  +KV AVL LLGG    +  P +  +A  QN+          
Sbjct: 82  NQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRC 141

Query: 64  ---RRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISS 120
              +R  SL RFR+KR  R FEKK+RY VR+EVALRM RNKGQFTS+K  +        +
Sbjct: 142 SLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTD-----GAYN 196

Query: 121 WGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRD 180
            G++Q  A D     + +I C HCGIS K TPMMRRGP GPRTLCNACGL WAN+GTLRD
Sbjct: 197 SGTDQDSAQD---DAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRD 253

Query: 181 LSK 183
           LSK
Sbjct: 254 LSK 256

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 33/44 (75%)

Query: 61  QNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQF 104
           Q   R+A++I+FR+KRKERNF KK+RY  RK +A +  R +GQF
Sbjct: 678 QREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQF 721

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 33/44 (75%)

Query: 61  QNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQF 104
           Q   R+A++I+FR+KRKERNF KK+RY  RK +A +  R +GQF
Sbjct: 678 QREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQF 721

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q00858|CGPB_FUSSO Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)

Query: 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 182
           +++ VC  CG  +  +P  R+GP GP+TLCNACGL WA K   R+ S
Sbjct: 397 SEEYVCTDCGTLD--SPEWRKGPSGPKTLCNACGLRWAKKEKKRNSS 441

Binds a palindromic promoter element essential for induction of fungal cutinase gene.

Fusarium solani subsp. pisi (taxid: 70791)

>sp|B0G188|GTAP_DICDI GATA zinc finger domain-containing protein 16 OS=Dictyostelium discoideum GN=gtaP PE=4 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 138 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWA 173
           ++ C  CG++  +TP  RRGP G +TLCNACGL WA
Sbjct: 476 ELSCHTCGVT--NTPEWRRGPNGAKTLCNACGLAWA 509

Dictyostelium discoideum (taxid: 44689)

>sp|O13415|AREA_ASPOR Nitrogen regulatory protein areA OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=areA PE=4 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 9/123 (7%)

Query: 66  LASLIRFREKRKERNFEKKIRYTVRKEVA--LRMQRNKGQFTSAKSNNEDSASAISSWGS 123
           +AS+   R + ++   +K  R T     A  LR   +    TS  S N    SA+SS   
Sbjct: 583 VASVSEVRNREQDPRRQKIARTTSTPNTAQLLRQSMHSNNNTSHTSPNTPPESALSSAVP 642

Query: 124 NQ--SWAGDVNGSQ--NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLR 179
           ++  S  G  NG Q  N    C +C    ++TP+ RR PEG + LCNACGL     G +R
Sbjct: 643 SRPASPGGSKNGDQGSNGPTTCTNCFT--QTTPLWRRNPEG-QPLCNACGLFLKLHGVVR 699

Query: 180 DLS 182
            LS
Sbjct: 700 PLS 702

Major nitrogen regulatory protein. Positively acting regulatory gene of nitrogen metabolite repression.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q75JZ0|GTAH_DICDI GATA zinc finger domain-containing protein 8 OS=Dictyostelium discoideum GN=gtaH PE=4 SV=1

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 7/61 (11%)

Query: 140 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK-----GTLRDLSKAAPQAGQTSSL 194
           VCR+C  +E  TP  R+GP+G ++LCNACGL +A         L  L++   +   TS L
Sbjct: 461 VCRNCKTTE--TPEWRKGPDGTKSLCNACGLHYAKNVKREAAGLHHLNEVGKKVDLTSIL 518

Query: 195 N 195
           N
Sbjct: 519 N 519

Dictyostelium discoideum (taxid: 44689)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 3/64 (4%)

Query: 49  PSTTPAIPIANNQNNRRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAK 108
           P T  A+P+ + +   R A ++R+REKRK R FEK IRY  RK  A    R KG+F    
Sbjct: 282 PGTQRAVPLTSAE---REARVMRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 338

Query: 109 SNNE 112
             NE
Sbjct: 339 DTNE 342

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
356526306	300	PREDICTED: GATA transcription factor 28-	0.885	0.646	0.716	4e-84
225443335	299	PREDICTED: GATA transcription factor 28-	0.881	0.645	0.742	2e-82
297735780	244	unnamed protein product [Vitis vinifera]	0.881	0.790	0.742	1e-81
449491798	303	PREDICTED: GATA transcription factor 24-	0.881	0.636	0.692	3e-81
224113267	294	predicted protein [Populus trichocarpa]	0.803	0.598	0.776	3e-81
449447986	299	PREDICTED: GATA transcription factor 24-	0.881	0.645	0.692	3e-81
18403600	302	GATA transcription factor 28 [Arabidopsi	0.917	0.665	0.689	2e-79
15028099	302	putative flowering protein CONSTANS [Ara	0.917	0.665	0.689	6e-79
30686115	295	GATA transcription factor 24 [Arabidopsi	0.917	0.681	0.694	1e-78
18402914	297	GATA transcription factor 24 [Arabidopsi	0.917	0.676	0.688	2e-78

>gi|356526306|ref|XP_003531759.1| PREDICTED: GATA transcription factor 28-like [Glycine max]

 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 152/212 (71%), Positives = 174/212 (82%), Gaps = 18/212 (8%)

Query: 14  GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNR--------- 64
           GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGRE+P T PA+P++ N NNR         
Sbjct: 86  GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTMPAMPVSPNHNNRGYTGTPQKF 145

Query: 65  ----RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISS 120
               RLASLIRFREKRKERN++KKIRYTVRKEVALRMQRNKGQFTS+KSNN++SAS  ++
Sbjct: 146 SVPQRLASLIRFREKRKERNYDKKIRYTVRKEVALRMQRNKGQFTSSKSNNDESASNATN 205

Query: 121 WGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRD 180
           WG +++W  D +GSQ QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKG LRD
Sbjct: 206 WGMDENWTADNSGSQQQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGILRD 265

Query: 181 LSKAAPQAGQTSSLNKNEENGTLKAEQVIRAV 212
           LS+AAP +G   +     EN +L+A Q++  V
Sbjct: 266 LSRAAPLSGTIKN-----ENKSLEANQIVHRV 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443335|ref|XP_002263707.1| PREDICTED: GATA transcription factor 28-like [Vitis vinifera]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/206 (74%), Positives = 168/206 (81%), Gaps = 13/206 (6%)

Query: 15  DQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNN----------- 63
           +QLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVP T PA+ IA +              
Sbjct: 85  NQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPTMPALSIAGHNRELPGTPQRYNVP 144

Query: 64  RRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGS 123
            RLASLIRFREKRKERNF+KKIRYTVRKEVALRMQRNKGQFTS+KSN++DSAS    W S
Sbjct: 145 HRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDDSASTTPGWES 204

Query: 124 NQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 183
             SW    NG  NQ+IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK
Sbjct: 205 --SWGMAGNGPINQEIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 262

Query: 184 AAPQAGQTSSLNKNEENGTLKAEQVI 209
           AAP+AGQ+ SLN+  ENG  + +Q++
Sbjct: 263 AAPEAGQSPSLNQTGENGNFETDQMV 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735780|emb|CBI18467.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 153/206 (74%), Positives = 168/206 (81%), Gaps = 13/206 (6%)

Query: 15  DQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNN----------- 63
           +QLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVP T PA+ IA +              
Sbjct: 30  NQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPTMPALSIAGHNRELPGTPQRYNVP 89

Query: 64  RRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGS 123
            RLASLIRFREKRKERNF+KKIRYTVRKEVALRMQRNKGQFTS+KSN++DSAS    W S
Sbjct: 90  HRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDDSASTTPGWES 149

Query: 124 NQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 183
             SW    NG  NQ+IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK
Sbjct: 150 --SWGMAGNGPINQEIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 207

Query: 184 AAPQAGQTSSLNKNEENGTLKAEQVI 209
           AAP+AGQ+ SLN+  ENG  + +Q++
Sbjct: 208 AAPEAGQSPSLNQTGENGNFETDQMV 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491798|ref|XP_004159006.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 172/218 (78%), Gaps = 25/218 (11%)

Query: 6   RVMVLERIG---DQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQN 62
           R ++++R G   DQLTLS+QGQVYVFDSVSPEKVQAVLLLLGGREVP   P+IPI N  N
Sbjct: 71  RGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPN 130

Query: 63  NR----------------------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN 100
           +R                      RLASLIRFREKRKERNF+KKIRYTVRKEVALRMQRN
Sbjct: 131 DRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRN 190

Query: 101 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 160
           KGQFTS+K  +EDS+ A++SW  N+SW+ D NGSQ Q+I+CRHCGISEKSTPMMRRGP+G
Sbjct: 191 KGQFTSSKPIHEDSSLAMASWEQNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDG 250

Query: 161 PRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNE 198
           PRTLCNACGLMWANKGTLRDLSK   Q GQT++ N+NE
Sbjct: 251 PRTLCNACGLMWANKGTLRDLSKTPNQGGQTATFNRNE 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113267|ref|XP_002316441.1| predicted protein [Populus trichocarpa] gi|222865481|gb|EEF02612.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 149/192 (77%), Positives = 163/192 (84%), Gaps = 16/192 (8%)

Query: 14  GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPS-TTPAIPIA--NNQNNR------ 64
           GDQLTL+FQGQVYVFDSVSP KVQAVLLLLGGREVP+ +TP +PI   +N NNR      
Sbjct: 75  GDQLTLTFQGQVYVFDSVSPGKVQAVLLLLGGREVPAASTPTVPITTHHNSNNRGLSGTP 134

Query: 65  -------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASA 117
                  RLASLIRFREKRKERNF+KKIRYTVRKEVALRMQRNKGQFTS+K N++DSASA
Sbjct: 135 QRFSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPNHDDSASA 194

Query: 118 ISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT 177
            +SWGSN+S   D NGSQ+Q+ +CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT
Sbjct: 195 ATSWGSNESGGSDSNGSQHQEAICRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT 254

Query: 178 LRDLSKAAPQAG 189
           LRDLSKAAP  G
Sbjct: 255 LRDLSKAAPHTG 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447986|ref|XP_004141747.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 151/218 (69%), Positives = 172/218 (78%), Gaps = 25/218 (11%)

Query: 6   RVMVLERIG---DQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQN 62
           R ++++R G   DQLTLS+QGQVYVFDSVSPEKVQAVLLLLGGREVP   P+IPI N  N
Sbjct: 71  RGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPN 130

Query: 63  NR----------------------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN 100
           +R                      RLASLIRFREKRKERNF+KKIRYTVRKEVALRMQRN
Sbjct: 131 DRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRN 190

Query: 101 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 160
           KGQFTS+K  +EDS+ A++SW  N+SW+ D NGSQ Q+I+CRHCGISEKSTPMMRRGP+G
Sbjct: 191 KGQFTSSKPIHEDSSLAMASWEQNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDG 250

Query: 161 PRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNE 198
           PRTLCNACGLMWANKGTLRDLSK   Q GQT++ N+NE
Sbjct: 251 PRTLCNACGLMWANKGTLRDLSKTPNQGGQTATFNRNE 288

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403600|ref|NP_564593.1| GATA transcription factor 28 [Arabidopsis thaliana] gi|42571823|ref|NP_974002.1| GATA transcription factor 28 [Arabidopsis thaliana] gi|71660840|sp|Q8H1G0.1|GAT28_ARATH RecName: Full=GATA transcription factor 28; AltName: Full=Protein TIFY 2A; AltName: Full=ZIM-like 2 protein gi|23297318|gb|AAN12940.1| putative flowering protein CONSTANS [Arabidopsis thaliana] gi|38603660|dbj|BAD02931.1| GATA-type zinc finger protein [Arabidopsis thaliana] gi|332194567|gb|AEE32688.1| GATA transcription factor 28 [Arabidopsis thaliana] gi|332194568|gb|AEE32689.1| GATA transcription factor 28 [Arabidopsis thaliana]

 Score =  301 bits (770), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 149/216 (68%), Positives = 167/216 (77%), Gaps = 15/216 (6%)

Query: 14  GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNR--------- 64
           GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P    + +QNNR         
Sbjct: 81  GDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTPQ 140

Query: 65  ------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAI 118
                 RLASL+RFREKRK RNF+KKIRYTVRKEVALRMQRNKGQFTSAKSNN+++ASA 
Sbjct: 141 RFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAG 200

Query: 119 SSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178
           SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP GPRTLCNACGLMWANKG  
Sbjct: 201 SSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAF 260

Query: 179 RDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGN 214
           RDLSKA+PQ  Q   LNKNE+       Q++  V N
Sbjct: 261 RDLSKASPQTAQNLPLNKNEDANLETDHQIMITVAN 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15028099|gb|AAK76580.1| putative flowering protein CONSTANS [Arabidopsis thaliana]

 Score =  299 bits (765), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 149/216 (68%), Positives = 166/216 (76%), Gaps = 15/216 (6%)

Query: 14  GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNR--------- 64
           GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P    + +QNNR         
Sbjct: 81  GDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTPQ 140

Query: 65  ------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAI 118
                 RLASL+RFREKRK RNF KKIRYTVRKEVALRMQRNKGQFTSAKSNN+++ASA 
Sbjct: 141 RFSIPQRLASLVRFREKRKGRNFGKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAG 200

Query: 119 SSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178
           SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP GPRTLCNACGLMWANKG  
Sbjct: 201 SSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAF 260

Query: 179 RDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGN 214
           RDLSKA+PQ  Q   LNKNE+       Q++  V N
Sbjct: 261 RDLSKASPQTAQNLPLNKNEDANLETDHQIMITVAN 296

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686115|ref|NP_850618.1| GATA transcription factor 24 [Arabidopsis thaliana] gi|14596059|gb|AAK68757.1| Unknown protein [Arabidopsis thaliana] gi|17978695|gb|AAL47341.1| unknown protein [Arabidopsis thaliana] gi|332642950|gb|AEE76471.1| GATA transcription factor 24 [Arabidopsis thaliana]

 Score =  298 bits (763), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/216 (69%), Positives = 168/216 (77%), Gaps = 15/216 (6%)

Query: 14  GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNR--------- 64
           GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P    + +QNNR         
Sbjct: 77  GDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRGLSGTPQRL 136

Query: 65  ----RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISS 120
               RLASL+RFREKRK RNF+K IRYTVRKEVALRMQR KGQFTSAKS+N+DS S  S 
Sbjct: 137 SVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSD 196

Query: 121 WGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRD 180
           WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GPRTLCNACGLMWANKGTLRD
Sbjct: 197 WGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRD 256

Query: 181 LSKA-APQAGQTSSLNKNEENGTLKAEQVIRAVGNI 215
           LSK   PQ  Q  SLNKNE+   L+A+Q++   G+I
Sbjct: 257 LSKVPPPQTPQHLSLNKNED-ANLEADQMMEVTGDI 291

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402914|ref|NP_566676.1| GATA transcription factor 24 [Arabidopsis thaliana] gi|71660846|sp|Q8GXL7.2|GAT24_ARATH RecName: Full=GATA transcription factor 24; AltName: Full=Protein TIFY 2B; AltName: Full=ZIM-like 1 protein gi|9280218|dbj|BAB01708.1| unnamed protein product [Arabidopsis thaliana] gi|38603658|dbj|BAD02930.1| GATA-type zinc finger protein [Arabidopsis thaliana] gi|332642949|gb|AEE76470.1| GATA transcription factor 24 [Arabidopsis thaliana]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 150/218 (68%), Positives = 168/218 (77%), Gaps = 17/218 (7%)

Query: 14  GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNR--------- 64
           GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P    + +QNNR         
Sbjct: 77  GDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQ 136

Query: 65  ------RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAI 118
                 RLASL+RFREKRK RNF+K IRYTVRKEVALRMQR KGQFTSAKS+N+DS S  
Sbjct: 137 RLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTG 196

Query: 119 SSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178
           S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GPRTLCNACGLMWANKGTL
Sbjct: 197 SDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTL 256

Query: 179 RDLSKA-APQAGQTSSLNKNEENGTLKAEQVIRAVGNI 215
           RDLSK   PQ  Q  SLNKNE+   L+A+Q++   G+I
Sbjct: 257 RDLSKVPPPQTPQHLSLNKNED-ANLEADQMMEVTGDI 293

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:505006360	297	ZML1 "ZIM-like 1" [Arabidopsis	0.931	0.686	0.619	6.9e-63
TAIR|locus:2017582	302	ZML2 "ZIM-LIKE 2" [Arabidopsis	0.917	0.665	0.625	2.3e-62
CGD|CAL0005605	442	orf19.1577 [Candida albicans (	0.356	0.176	0.418	1.4e-07
UNIPROTKB|Q5ALK1	442	CaO19.1577 "Putative uncharact	0.356	0.176	0.418	1.4e-07
CGD|CAL0004848	446	BRG1 [Candida albicans (taxid:	0.374	0.183	0.408	7.4e-07
UNIPROTKB|Q59LY1	446	GAT2 "Putative uncharacterized	0.374	0.183	0.408	7.4e-07
DICTYBASE|DDB_G0267640	952	gtaE "GATA zinc finger domain-	0.337	0.077	0.395	1.6e-06
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.296	0.436	0.385	3.4e-06
DICTYBASE|DDB_G0295707	695	gtaP "GATA zinc finger domain-	0.301	0.094	0.383	1.9e-05
DICTYBASE|DDB_G0270756	1006	gtaG "GATA zinc finger domain-	0.159	0.034	0.594	1.9e-05

TAIR|locus:505006360 ZML1 "ZIM-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
 Identities = 137/221 (61%), Positives = 155/221 (70%)

Query:    14 GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNR--------- 64
             GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P    + +QNNR         
Sbjct:    77 GDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQ 136

Query:    65 ------RLASLXXXXXXXXXXXXXXXXXYTVRKEVALRMQRNKGQFTSAKSNNEDSASAI 118
                   RLASL                 YTVRKEVALRMQR KGQFTSAKS+N+DS S  
Sbjct:   137 RLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTG 196

Query:   119 SSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178
             S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GPRTLCNACGLMWANKGTL
Sbjct:   197 SDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTL 256

Query:   179 RDLSKAAP-QAGQTSSLNKNEENGTLKAEQVIRAVGNINGS 218
             RDLSK  P Q  Q  SLNKNE+   L+A+Q++   G+I+ +
Sbjct:   257 RDLSKVPPPQTPQHLSLNKNED-ANLEADQMMEVTGDISNT 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2017582 ZML2 "ZIM-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 135/216 (62%), Positives = 151/216 (69%)

Query:    14 GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNR--------- 64
             GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P    + +QNNR         
Sbjct:    81 GDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTPQ 140

Query:    65 ------RLASLXXXXXXXXXXXXXXXXXYTVRKEVALRMQRNKGQFTSAKSNNEDSASAI 118
                   RLASL                 YTVRKEVALRMQRNKGQFTSAKSNN+++ASA 
Sbjct:   141 RFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAG 200

Query:   119 SSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178
             SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP GPRTLCNACGLMWANKG  
Sbjct:   201 SSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAF 260

Query:   179 RDLSKAAPQAGQTSSLNKNEENGTLKAEQVIRAVGN 214
             RDLSKA+PQ  Q   LNKNE+       Q++  V N
Sbjct:   261 RDLSKASPQTAQNLPLNKNEDANLETDHQIMITVAN 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

CGD|CAL0005605 orf19.1577 [Candida albicans (taxid:5476)]

 Score = 139 (54.0 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 36/86 (41%), Positives = 48/86 (55%)

Query:   115 ASAISSWGSNQSWAGDVNG--SQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 172
             A  +S+  SN +  G++N   S   +I C+HC   E  TP  RRGPEG RTLCNACGL +
Sbjct:   355 AQTLSAVTSNLT-NGNLNTELSAKPEITCQHCCSQE--TPEWRRGPEGSRTLCNACGLFY 411

Query:   173 AN---KGTLRDLSKAAPQAGQTSSLN 195
             +    K  LR+  K      QT ++N
Sbjct:   412 SKLIKKYGLREADKVMLHRKQTGTVN 437

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5ALK1 CaO19.1577 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 139 (54.0 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 36/86 (41%), Positives = 48/86 (55%)

Query:   115 ASAISSWGSNQSWAGDVNG--SQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 172
             A  +S+  SN +  G++N   S   +I C+HC   E  TP  RRGPEG RTLCNACGL +
Sbjct:   355 AQTLSAVTSNLT-NGNLNTELSAKPEITCQHCCSQE--TPEWRRGPEGSRTLCNACGLFY 411

Query:   173 AN---KGTLRDLSKAAPQAGQTSSLN 195
             +    K  LR+  K      QT ++N
Sbjct:   412 SKLIKKYGLREADKVMLHRKQTGTVN 437

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0004848 BRG1 [Candida albicans (taxid:5476)]

 Score = 134 (52.2 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 40/98 (40%), Positives = 51/98 (52%)

Query:   131 VNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQA-- 188
             VN S N+   C  CG +E  TP  RRGP+G RTLCNACGL  A     +  + AA +   
Sbjct:   276 VNKSTNR---CHRCGTTE--TPEWRRGPKGVRTLCNACGLFHAKLVKRKGAALAAEEVLN 330

Query:   189 --------GQTSSLNKNEENGTLKAEQVIRAVG-NING 217
                     G+  S+ K+  N +LK +Q I  VG  ING
Sbjct:   331 NKVTKGKNGRRISMKKHLLNESLKQQQQINGVGIPING 368

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900430 "positive regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0044011 "single-species biofilm formation on inanimate substrate" evidence=IMP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:1900233 "positive regulation of single-species biofilm formation on inanimate substrate" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

UNIPROTKB|Q59LY1 GAT2 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 134 (52.2 bits), Expect = 7.4e-07, P = 7.4e-07
 Identities = 40/98 (40%), Positives = 51/98 (52%)

Query:   131 VNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQA-- 188
             VN S N+   C  CG +E  TP  RRGP+G RTLCNACGL  A     +  + AA +   
Sbjct:   276 VNKSTNR---CHRCGTTE--TPEWRRGPKGVRTLCNACGLFHAKLVKRKGAALAAEEVLN 330

Query:   189 --------GQTSSLNKNEENGTLKAEQVIRAVG-NING 217
                     G+  S+ K+  N +LK +Q I  VG  ING
Sbjct:   331 NKVTKGKNGRRISMKKHLLNESLKQQQQINGVGIPING 368

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IMP

GO:0036180 "filamentous growth of a population of unicellular organisms in response to biotic stimulus" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0044011 "single-species biofilm formation on inanimate substrate" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0071216 "cellular response to biotic stimulus" evidence=IMP

GO:1900233 "positive regulation of single-species biofilm formation on inanimate substrate" evidence=IMP

GO:1900430 "positive regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

DICTYBASE|DDB_G0267640 gtaE "GATA zinc finger domain-containing protein 5" [Dictyostelium discoideum (taxid:44689)]

 Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 32/81 (39%), Positives = 45/81 (55%)

Query:   141 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNKNEEN 200
             C  C  S  +TP  R+GPEGP TLCNACGL +A K   + L+K   +  Q++++N N  N
Sbjct:   241 CYQCNTS--NTPEWRKGPEGPATLCNACGLAYAKK---QKLTKNNIKFNQSTNVNNNTNN 295

Query:   201 GTLKAEQVIRAVG--NINGST 219
                +  Q I   G  N+  +T
Sbjct:   296 TITQLNQQINNQGLPNLTSTT 316

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 27/70 (38%), Positives = 39/70 (55%)

Query:   136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLN 195
             N+   C  CG S+  TP+ R GP GP++LCNACG+   N+   R L     +  +  S N
Sbjct:    38 NEKKSCAICGTSK--TPLWRGGPAGPKSLCNACGIR--NRKKRRTLISNRSEDKKKKSHN 93

Query:   196 KNEENG-TLK 204
             +N + G +LK
Sbjct:    94 RNPKFGDSLK 103

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

DICTYBASE|DDB_G0295707 gtaP "GATA zinc finger domain-containing protein 16" [Dictyostelium discoideum (taxid:44689)]

 Score = 124 (48.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 28/73 (38%), Positives = 38/73 (52%)

Query:   106 SAKSNNEDSASAISSWGSNQSWAGDVNGSQNQ-----DIVCRHCGISEKSTPMMRRGPEG 160
             S   N  +S    SS G+N + A      +       ++ C  CG++  +TP  RRGP G
Sbjct:   439 SKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVT--NTPEWRRGPNG 496

Query:   161 PRTLCNACGLMWA 173
              +TLCNACGL WA
Sbjct:   497 AKTLCNACGLAWA 509

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0270756 gtaG "GATA zinc finger domain-containing protein 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 121 (47.7 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
 Identities = 22/37 (59%), Positives = 26/37 (70%)

Query:   139 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 175
             + C +CG   K+TP  RRGP GP TLCNACGL +A K
Sbjct:   840 LYCHNCGT--KNTPEWRRGPSGPATLCNACGLAYAKK 874

GO:0030587 "sorocarp development" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H1G0	GAT28_ARATH	No assigned EC number	0.6898	0.9178	0.6655	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_X0958 hypothetical protein (294 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
pfam06203	45	pfam06203, CCT, CCT motif	1e-16
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	7e-13
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	8e-13
pfam00320	36	pfam00320, GATA, GATA zinc finger	1e-12
pfam06200	36	pfam06200, tify, tify domain	1e-10
smart00979	36	smart00979, TIFY, This short possible domain is fo	5e-10
pfam09425	27	pfam09425, CCT_2, Divergent CCT motif	3e-04

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 70.7 bits (174), Expect = 1e-16
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 65  RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKS 109
           R A+L+R++EKRK R F+KKIRY  RK VA    R KG+F     
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 60.8 bits (148), Expect = 7e-13
 Identities = 24/44 (54%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 140 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 183
            C +CG    +TP+ RRGP G  TLCNACGL W   G +R LSK
Sbjct: 1   ACSNCG--TTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSK 42

Length = 54

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 60.5 bits (147), Expect = 8e-13
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLR 179
                C +CG +E  TP+ RRGP G +TLCNACGL +   G L+
Sbjct: 1   GSGRSCSNCGTTE--TPLWRRGPSGNKTLCNACGLYYKKHGGLK 42

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)

Query: 141 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178
           C +CG ++  TP+ RRGP+G RTLCNACGL +   G  
Sbjct: 1   CSNCGTTK--TPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 54.4 bits (132), Expect = 1e-10
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 15 DQLTLSFQGQVYVFDSVSPEKVQAVLLLLGG 45
           QLT+ + GQV VFD V PEK Q ++ L   
Sbjct: 6  AQLTIFYGGQVCVFDDVPPEKAQEIMRLASR 36

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 52.6 bits (127), Expect = 5e-10
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 14 GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGG 45
            QLT+ + G V VFD V PEK Q ++ L G 
Sbjct: 5  SQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|117965 pfam09425, CCT_2, Divergent CCT motif

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 7/34 (20%)

Query: 56 PIANNQNNRRLASLIRFREKRKERNFEKKIRYTV 89
          PIA      R ASL RF EKRK+R       Y V
Sbjct: 1  PIA------RKASLQRFLEKRKDRLV-SAAPYQV 27

This short motif is found in a number of plant proteins. It appears to be related to the N-terminal half of the CCT motif. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.65
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.63
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.58
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.54
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.5
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.71
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	98.58
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.4
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	92.62
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	91.61
PF13619	60	KTSC: KTSC domain	82.83
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	81.01

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.65  E-value=1.6e-16  Score=102.06  Aligned_cols=35  Identities=43%  Similarity=0.653  Sum_probs=32.5

Q ss_pred             cCCCCceEEEeccEEEEecCCCHHHHHHHHHHhcC
Q 027756           11 ERIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGG   45 (219)
Q Consensus        11 ~~~~~qLTifY~G~v~Vfd~v~~~ka~~im~la~~   45 (219)
                      .++++||||||+|+|+|||+||+|||++||++|+.
T Consensus         2 ~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~r   36 (36)
T PF06200_consen    2 SPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLASR   36 (36)
T ss_pred             CCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhcC
Confidence            46789999999999999999999999999999973

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.63  E-value=2e-16  Score=110.07  Aligned_cols=44  Identities=55%  Similarity=1.175  Sum_probs=41.1

Q ss_pred             cccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCC
Q 027756          140 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA  185 (219)
Q Consensus       140 ~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~  185 (219)
                      .|+||++  ++||+||+||+|..+|||||||||++++..||+....
T Consensus         1 ~C~~C~~--~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGT--TTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRK   44 (54)
T ss_pred             CCCCCCC--CCCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCc
Confidence            4999999  8899999999888999999999999999999998864

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.58  E-value=1.2e-15  Score=105.25  Aligned_cols=45  Identities=51%  Similarity=1.032  Sum_probs=40.6

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC-CCCccC
Q 027756          138 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL-RDLSKA  184 (219)
Q Consensus       138 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~-r~~~~~  184 (219)
                      ...|+||++  +.||+||+||.|..+|||||||||++++.+ +|....
T Consensus         3 ~~~C~~C~~--~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~   48 (52)
T smart00401        3 GRSCSNCGT--TETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLK   48 (52)
T ss_pred             CCCcCCCCC--CCCCccccCCCCCCcEeecccHHHHHcCCCCCccccc
Confidence            568999999  789999999999989999999999999998 776554

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.54  E-value=1.2e-15  Score=97.77  Aligned_cols=36  Identities=56%  Similarity=1.214  Sum_probs=28.5

Q ss_pred             ccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 027756          141 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL  178 (219)
Q Consensus       141 C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~  178 (219)
                      |.||++  ++||+||+||.|..+|||+||++|++++++
T Consensus         1 C~~C~t--t~t~~WR~~~~g~~~LCn~Cg~~~kk~~~~   36 (36)
T PF00320_consen    1 CSNCGT--TETPQWRRGPNGNRTLCNACGLYYKKYGKM   36 (36)
T ss_dssp             -TTT----ST-SSEEEETTSEE-EEHHHHHHHHHHSS-
T ss_pred             CcCCcC--CCCchhhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            899999  789999999999888999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.50  E-value=8.3e-15  Score=98.42  Aligned_cols=44  Identities=57%  Similarity=0.801  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhhhhccccceeccccHHHHHHHHhhcCccccCC
Q 027756           65 RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAK  108 (219)
Q Consensus        65 R~~sl~rf~eKrk~R~~~k~~rY~~Rk~~A~~r~R~kGrf~s~~  108 (219)
                      |+++|+||+|||++|+|+|+|+|++||.+|+.+||++|+|++..
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~   44 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKS   44 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCC
Confidence            67899999999999999999999999999999999999999874

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.71  E-value=8.8e-09  Score=86.79  Aligned_cols=46  Identities=48%  Similarity=1.001  Sum_probs=39.9

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCC
Q 027756          138 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA  185 (219)
Q Consensus       138 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~  185 (219)
                      ...|.+|++  +.||+||++|.|+..||||||++|+++...+++....
T Consensus       199 ~~~c~~~~~--~~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~  244 (340)
T KOG1601|consen  199 LRQCSNCGT--TKTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKR  244 (340)
T ss_pred             CcccCCCCC--CCCcceecCCCCCccccccchhhhhhcCccccccccC
Confidence            589999999  7899999999999999999999999997555555543

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=98.58  E-value=2.3e-08  Score=60.34  Aligned_cols=26  Identities=50%  Similarity=0.508  Sum_probs=10.0

Q ss_pred             hHHHHHHHHHHHHHhhhhccccceecc
Q 027756           62 NNRRLASLIRFREKRKERNFEKKIRYT   88 (219)
Q Consensus        62 ~~~R~~sl~rf~eKrk~R~~~k~~rY~   88 (219)
                      |++|++||+||+||||+|+.. +..|.
T Consensus         1 P~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    1 PIARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             -----HHHHHHHHHH------------
T ss_pred             CchHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            578999999999999999997 56775

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.40  E-value=1.5e-07  Score=90.82  Aligned_cols=59  Identities=36%  Similarity=0.610  Sum_probs=47.3

Q ss_pred             CCCCcccccccccccccCCCCccccCCCC----CcccchhhhHHHHhcCCCC-CCccCCCCCCccc
Q 027756          132 NGSQNQDIVCRHCGISEKSTPMMRRGPEG----PRTLCNACGLMWANKGTLR-DLSKAAPQAGQTS  192 (219)
Q Consensus       132 ~~~~~~~~~C~~C~~~~~~Tp~wR~Gp~G----~~~LCNaCGl~~~~~~~~r-~~~~~~~~~~~~~  192 (219)
                      .+......+|.||.+  +.||+|||+..+    .-.|||||||+|+.|+.+| |+..+........
T Consensus       152 ~~~s~~~~vc~Nc~t--~stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~P~t~ks~~~ks~~  215 (498)
T COG5641         152 SDNSNQPHVCSNCKT--TSTPLWRRASSESSLPGNNLCNACGLYLKLHGSPRAPISLKSDSIKSRS  215 (498)
T ss_pred             cccccccchhccccc--cCCccccccccccccCCccccccccccccccCCcCCCcccccccccccc
Confidence            344555669999999  789999999993    2699999999999999999 8877655444444

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=92.62  E-value=0.3  Score=47.64  Aligned_cols=56  Identities=21%  Similarity=0.460  Sum_probs=38.8

Q ss_pred             cccccccccccCCCCcccc-C-CCCCcccchhhhHHHHhcCC------CCCCccCCCCCCccccCC
Q 027756          138 DIVCRHCGISEKSTPMMRR-G-PEGPRTLCNACGLMWANKGT------LRDLSKAAPQAGQTSSLN  195 (219)
Q Consensus       138 ~~~C~~C~~~~~~Tp~wR~-G-p~G~~~LCNaCGl~~~~~~~------~r~~~~~~~~~~~~~~~~  195 (219)
                      .+.|-+|+|  ++.-+|=. | |.-...||--|=+||++-+-      +..-.++.++++-.+...
T Consensus       386 g~~CEsC~t--tqs~qWYsWGppnmqcrLCasCWiyWKKygGLk~ptqle~~~~~~~p~~e~p~~r  449 (693)
T KOG3554|consen  386 GRACESCYT--TQSLQWYSWGPPNMQCRLCASCWIYWKKYGGLKMPTQLEGEDKGPPPPVEPPAPR  449 (693)
T ss_pred             CCccccccc--ccccceeccCCCCccchhhHHHHHHHHHhcCcCCcchhccccCCCCCCCCCCCCC
Confidence            678999999  78888865 4 44445899999999999762      334455555555444333

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=91.61  E-value=0.093  Score=51.27  Aligned_cols=52  Identities=25%  Similarity=0.275  Sum_probs=44.0

Q ss_pred             CCcccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCCC
Q 027756          134 SQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAP  186 (219)
Q Consensus       134 ~~~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~~  186 (219)
                      .......|.+|++. +.||.||+...-.-.+||+||++.+..+..+|+.++.-
T Consensus       293 ~~ps~~~~s~~~~~-~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~d  344 (498)
T COG5641         293 VLPSDKKRSTLTTS-TATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPD  344 (498)
T ss_pred             cchhhcCccccccc-ccCcccccccccccccccccccccCCcccccccCCCCC
Confidence            44457889999987 67999999988778999999999999999999888533

>PF13619 KTSC: KTSC domain

Probab=82.83  E-value=2.1  Score=29.76  Aligned_cols=37  Identities=30%  Similarity=0.464  Sum_probs=30.3

Q ss_pred             hhhhhccCCCCceEEEe-ccEEEEecCCCHHHHHHHHH
Q 027756            5 MRVMVLERIGDQLTLSF-QGQVYVFDSVSPEKVQAVLL   41 (219)
Q Consensus         5 ~~~~~~~~~~~qLTifY-~G~v~Vfd~v~~~ka~~im~   41 (219)
                      ++.+-=+.++..|.|.| +|.++.|.+||++-.+++|.
T Consensus         6 I~~v~Yd~~~~~L~V~F~~G~~Y~Y~~Vp~~~~~~l~~   43 (60)
T PF13619_consen    6 IRSVGYDPETRTLEVEFKSGSVYRYFGVPPEVYEALLN   43 (60)
T ss_pred             ccEEeECCCCCEEEEEEcCCCEEEECCCCHHHHHHHHc
Confidence            33444567788999999 89999999999999998876

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=81.01  E-value=0.5  Score=29.95  Aligned_cols=30  Identities=30%  Similarity=0.738  Sum_probs=14.4

Q ss_pred             ccccccccccCCCCccccCCCCCcccchhhhH
Q 027756          139 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGL  170 (219)
Q Consensus       139 ~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl  170 (219)
                      +.|.+||..  .+..-=.|.+-.+..|.+||-
T Consensus         1 kfC~~CG~~--l~~~ip~gd~r~R~vC~~Cg~   30 (34)
T PF14803_consen    1 KFCPQCGGP--LERRIPEGDDRERLVCPACGF   30 (34)
T ss_dssp             -B-TTT--B---EEE--TT-SS-EEEETTTTE
T ss_pred             CccccccCh--hhhhcCCCCCccceECCCCCC
Confidence            369999982  222222455566689999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
4gat_A	66	Solution Nmr Structure Of The Wild Type Dna Binding		5e-05
7gat_A	66	Solution Nmr Structure Of The L22v Mutant Dna Bindi		8e-05

>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain Of Area Complexed To A 13bp Dna Containing A Cgata Site, Regularized Mean Structure Length = 66

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 132 NGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 182
           NG QN    C +C    ++TP+ RR PEG + LCNACGL     G +R LS
Sbjct: 3   NGEQNGPTTCTNC--FTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 50

>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding Domain Of Area Complexed To A 13 Bp Dna Containing A Tgata Site, 34 Structures Length = 66

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 132 NGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 182
           NG QN    C +C    ++TP+ RR PEG + LCNACGL     G +R LS
Sbjct: 3   NGEQNGPTTCTNC--FTQTTPVWRRNPEG-QPLCNACGLFLKLHGVVRPLS 50

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	3e-11
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	3e-09
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	7e-09
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	2e-08
3dfx_A	63	Trans-acting T-cell-specific transcription factor	2e-07

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 56.4 bits (136), Expect = 3e-11
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 137 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSLNK 196
           +   C +C ++E  T   R         CNAC +        R ++  A    Q   L  
Sbjct: 7   KSFQCSNCSVTE--TIRWRNIRSKEGIQCNACFIYQRKYNKTRPVT--AVNKYQKRKLKV 62

Query: 197 NEENGT 202
            E NG 
Sbjct: 63  QETNGV 68

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 50.1 bits (120), Expect = 3e-09
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 183
           ++   C +CG +   TP+ RR   G   LCNACGL     G  R L +
Sbjct: 2   SEARECVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQNRPLIR 46

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 49.7 bits (118), Expect = 7e-09
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 132 NGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 182
           NG QN    C +C      TP+ RR PEG + LCNACGL     G +R LS
Sbjct: 3   NGEQNGPTTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 50

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 139 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 182
             C +C      TP+ RR PEG + LCNACGL     G +R LS
Sbjct: 2   TTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 42

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 132 NGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 182
           + ++     C +C  +   T + RR   G   +CNACGL +      R L+
Sbjct: 1   SAARRAGTSCANCQTTT--TTLWRRNANG-DPVCNACGLYYKLHNINRPLT 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.75
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.75
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.71
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.71
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.66
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.53
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.39
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	98.62
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	98.1

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.75  E-value=6.4e-19  Score=118.01  Aligned_cols=44  Identities=41%  Similarity=0.786  Sum_probs=40.5

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCcc
Q 027756          137 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK  183 (219)
Q Consensus       137 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~  183 (219)
                      ....|+||++  ++||+||+||+|+ +|||||||||++++++||+.+
T Consensus         3 ~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~   46 (46)
T 1gnf_A            3 EARECVNCGA--TATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR   46 (46)
T ss_dssp             CSCCCTTTCC--CCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred             CCCCCCCcCC--CCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence            3567999999  7899999999997 999999999999999999874

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.75  E-value=5e-19  Score=116.95  Aligned_cols=42  Identities=48%  Similarity=0.939  Sum_probs=39.2

Q ss_pred             ccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCcc
Q 027756          139 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK  183 (219)
Q Consensus       139 ~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~  183 (219)
                      ..|++|++  ++||+||+||+|+ +|||||||+|++|+++||++.
T Consensus         2 ~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l   43 (43)
T 2vut_I            2 TTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL   43 (43)
T ss_dssp             CCCSSSCC--CCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred             CcCCccCC--CCCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence            57999999  7899999999997 999999999999999999863

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.71  E-value=7.1e-18  Score=119.80  Aligned_cols=47  Identities=30%  Similarity=0.641  Sum_probs=42.7

Q ss_pred             cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCC
Q 027756          136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA  185 (219)
Q Consensus       136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~  185 (219)
                      .....|.||++  +.||+||+||+|+ +|||||||+|++++.+||+.+..
T Consensus         5 ~~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~   51 (63)
T 3dfx_A            5 RAGTSCANCQT--TTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKK   51 (63)
T ss_dssp             CTTCCCTTTCC--SCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCC
T ss_pred             CCCCcCCCcCC--CCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCC
Confidence            34567999999  7899999999997 99999999999999999998863

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.71  E-value=6.1e-18  Score=121.16  Aligned_cols=48  Identities=44%  Similarity=0.833  Sum_probs=43.8

Q ss_pred             cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCCC
Q 027756          136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAP  186 (219)
Q Consensus       136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~~  186 (219)
                      .....|+||++  ++||+||+||+|. +|||||||||++++++||+.+...
T Consensus         7 ~~~~~C~~C~t--~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~   54 (66)
T 4gat_A            7 NGPTTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTD   54 (66)
T ss_dssp             SSSCCCTTTCC--CCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCS
T ss_pred             CCCCCCCCCCC--CCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccc
Confidence            45688999999  7899999999997 999999999999999999998743

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.66  E-value=5.1e-18  Score=123.14  Aligned_cols=48  Identities=19%  Similarity=0.350  Sum_probs=40.4

Q ss_pred             cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCC
Q 027756          136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA  185 (219)
Q Consensus       136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~  185 (219)
                      .....|+||++  ++||+||+||.+..+|||||||||++++++||+....
T Consensus         6 ~~~~~C~nC~t--t~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~   53 (71)
T 2kae_A            6 KKSFQCSNCSV--TETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVN   53 (71)
T ss_dssp             --CCCCSSSCC--SCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHH
T ss_pred             CCCCcCCccCC--CCCCccccCCCCCCccchHHHHHHHHhCCCCCcccch
Confidence            45678999999  7899999965555599999999999999999998763

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.53  E-value=4.7e-15  Score=116.53  Aligned_cols=47  Identities=30%  Similarity=0.644  Sum_probs=43.1

Q ss_pred             cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCC
Q 027756          136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA  185 (219)
Q Consensus       136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~  185 (219)
                      .....|+||++  +.||+||+||+| .+|||||||||++|+.+||+.+..
T Consensus        57 ~~~~~C~~C~t--~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~  103 (115)
T 4hc9_A           57 RAGTSCANCQT--TTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKK  103 (115)
T ss_dssp             CTTCCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCC
T ss_pred             cccccCCCcCC--CCcceeEECCCC-CCcchHHHHHHHHhCCCCCccccc
Confidence            34578999999  789999999999 799999999999999999999874

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.39  E-value=2e-13  Score=107.18  Aligned_cols=45  Identities=44%  Similarity=0.773  Sum_probs=40.0

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccC
Q 027756          137 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKA  184 (219)
Q Consensus       137 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~  184 (219)
                      ....|.||++  ++||+||+||+| .+|||||||||+.++.++|+.+.
T Consensus         4 ~~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~Kp   48 (115)
T 4hc9_A            4 MGRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKP   48 (115)
T ss_dssp             --CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSC
T ss_pred             CCCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhcccccccccc
Confidence            3578999999  789999999999 69999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	3e-11
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	1e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	4e-08

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 54.4 bits (131), Expect = 3e-11
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 140 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 182
            C +C      TP+ RR PEG + LCNACGL     G +R LS
Sbjct: 2   TCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 41

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (126), Expect = 1e-10
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 141 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT 177
           C +CG +   TP+ RR   G   LCNACGL     G 
Sbjct: 5   CVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQ 38

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.5 bits (110), Expect = 4e-08
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 135 QNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAPQAGQTSSL 194
           +    VC +C  S   T + RR P G   +CNACGL +      R L+         +  
Sbjct: 1   KRAGTVCSNCQTST--TTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRK 57

Query: 195 NKNEEN 200
             ++  
Sbjct: 58  VSSKGK 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.79
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.73
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.71

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.79  E-value=1.9e-20  Score=121.18  Aligned_cols=41  Identities=49%  Similarity=0.980  Sum_probs=38.5

Q ss_pred             cccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCcc
Q 027756          140 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK  183 (219)
Q Consensus       140 ~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~  183 (219)
                      .|+||++  ++||+||+||+| ++|||||||||++|+++||+++
T Consensus         2 ~C~nC~t--t~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~sl   42 (42)
T d2vuti1           2 TCTNCFT--QTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSL   42 (42)
T ss_dssp             CCSSSCC--CCCSCCEECTTS-CEECHHHHHHHHHHSSCCCCCC
T ss_pred             cCCCCCC--CCCccceeCCCC-CCchhhhhHHHHHcCCCCCCCC
Confidence            5999999  789999999999 6999999999999999999864

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=4.9e-19  Score=112.77  Aligned_cols=37  Identities=43%  Similarity=0.882  Sum_probs=34.3

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCC
Q 027756          138 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT  177 (219)
Q Consensus       138 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~  177 (219)
                      .+.|+||++  ++||+||+||+| .+|||||||||+.|++
T Consensus         2 ~r~C~~Cgt--t~Tp~WR~gp~G-~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           2 ARECVNCGA--TATPLWRRDRTG-HYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCSSSCC--CCCSCCEECTTS-CEECSSHHHHHHHSCC
T ss_pred             cCCCCCCCC--CCCcccccCCCC-CEeeHHhHHHHHHhCC
Confidence            468999999  789999999999 6999999999999986

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.71  E-value=2.5e-18  Score=121.45  Aligned_cols=45  Identities=36%  Similarity=0.733  Sum_probs=41.2

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCC
Q 027756          138 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA  185 (219)
Q Consensus       138 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~  185 (219)
                      ...|+||++  ++||+||+||+| .+|||||||||++++..||+....
T Consensus         4 g~~C~nCgt--~~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~   48 (66)
T d3gata_           4 GTVCSNCQT--STTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRK   48 (66)
T ss_dssp             TCCCTTTCC--CCCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCC
T ss_pred             CCCCCCCCC--CCCcccccCCCC-CcccchhHHHHHHhCCcCCccccc
Confidence            457999999  789999999999 699999999999999999998753