Citrus Sinensis ID: 027772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEISSSNFFQN
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEccccccccccHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEEccccHcHHHHHHHHHHHHHHHccccEEEcccHccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccHHcccHHHHHHHHHcc
Coil and Loop (DISEMBL)
maashtssssthhQILQSKYDVFLsfrgedtrnnftDNLHTALIRNgfiafkddetldrgNEISSELSKAIEESNVSIVILSknyasspwcLDELAKIVECGNKRKDRKVFAVFygvdpadvrkqkgEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLfsgdvsplafykhthvtsleisssnffqn
Flexible Loop (DISEMBL)
maashtssssthhqiLQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVfygvdpadvrkqkgEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVtsleisssnffqn
Low Complexity Region (SEG)
MAAshtssssthhQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEISSSNFFQN
Disordered region (IsUnstruct)
**************ILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDET****************ESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLE*********
Disordered Region (DISOPRED)
******************KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEE*****EKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEISS******
Disordered Region (DISEMBL)
**************ILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEISSSNFFQN
Disordered Region (DISPRO)
***************LQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEISSSNFFQN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFNYLFTLIIFCLFSGDVSPLAFYKHTHVTSLEISSSNFFQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.648	0.124	0.5	1e-33
O82500	1095	Putative disease resistan	no	no	0.648	0.129	0.450	3e-28
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.652	0.109	0.442	1e-24
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.712	0.440	0.355	1e-17
Q9SYC9	571	Vesicle-associated protei	no	no	0.762	0.292	0.345	1e-15
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.639	0.340	0.333	2e-12
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.712	0.397	0.337	3e-10
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.561	0.064	0.258	0.0003

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 97/144 (67%), Gaps = 2/144 (1%)

Query: 20  YDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIV 79
           YDVFLSFRGEDTR  FT +L+  L   G   F+DD+ L+ G  I  EL KAIEES  +IV
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 80  ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEE 139
           + S+NYA+S WCL+EL KI+EC  + K + V  +FY VDP+ VR QK E F + F ++E 
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFK-QTVIPIFYDVDPSHVRNQK-ESFAKAFEEHET 129

Query: 140 EFKENHEKVLKWRAALTTVASLAG 163
           ++K++ E + +WR AL   A+L G
Sbjct: 130 KYKDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  125 bits (313), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 91/153 (59%), Gaps = 11/153 (7%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
           +YDVF SFRGED RNNF  +L       G + F+DD  + R + I  EL  AI ES +S+
Sbjct: 10  RYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDH-IKRSHTIGHELRAAIRESKISV 68

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGE---DFERVFA 135
           V+ S+NYASS WCLDEL +I++C  + +  KV  VFY VDP+D+RKQ G+    F     
Sbjct: 69  VLFSENYASSSWCLDELIEIMKC-KEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFLETCC 127

Query: 136 KYEEEFKENHEKVLKWRAALTTVASLAGWHLQD 168
              EE + N      WR ALT  A++ G H Q+
Sbjct: 128 GKTEERQHN------WRRALTDAANILGDHPQN 154

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 95/149 (63%), Gaps = 6/149 (4%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
           +YDVF SFRGED R++F  +L   L R   I F DDE ++R   I  EL  AI+ES ++I
Sbjct: 11  RYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDE-IERSRSIGPELLSAIKESRIAI 68

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYE 138
           VI SKNYASS WCL+EL +I +C     ++ V  +F+ VD ++V+KQ GE F +VF +  
Sbjct: 69  VIFSKNYASSTWCLNELVEIHKCYTNL-NQMVIPIFFHVDASEVKKQTGE-FGKVFEETC 126

Query: 139 EEFKENHEKVLKWRAALTTVASLAGWHLQ 167
           +   E+ ++   W+ AL  VA +AG+ L+
Sbjct: 127 KAKSEDEKQ--SWKQALAAVAVMAGYDLR 153

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/169 (35%), Positives = 91/169 (53%), Gaps = 13/169 (7%)

Query: 2   AASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKD-DETLDRG 60
           A+S    + T  Q       VF++FRG+D RN F   L  A+       F D DE +  G
Sbjct: 3   ASSSVRPTPTGPQ-------VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVV--G 53

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            ++ + L   I+ES V++VI SK+Y SS WCLDELA+I +C N+        +FY + P+
Sbjct: 54  TDLVN-LFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQ-GGLNAIPIFYKLAPS 111

Query: 121 DVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDR 169
            V + KG  F   F   +E++K + E+  KW+ AL ++  L G  L ++
Sbjct: 112 SVLELKG-GFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGLRLAEK 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 4/171 (2%)

Query: 4   SHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEI 63
           S+ +SS+  H I   +Y VF++FRG++ RN+F   L  A+       F D+  L RG  +
Sbjct: 342 SNAASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVEL-RGTNL 400

Query: 64  SSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVR 123
           +  L + IEES V++ I S+ Y  S WCLDEL K+ E   + K   V  VFY ++    +
Sbjct: 401 NY-LFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGK-LVVVPVFYRLNATACK 458

Query: 124 KQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFPLI 174
           +  G  F       E E++   E++ KW+ AL++V S  G     R + LI
Sbjct: 459 RFMGA-FGDNLRNLEWEYRSEPERIQKWKEALSSVFSNIGLTSDIRRYNLI 508

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 10/150 (6%)

Query: 15  ILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEES 74
           ++ +   VF++FRG+D R  F   L  AL +     F D++  +RG  + S L   I ES
Sbjct: 17  LIPTGPQVFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQE-ERGKYLIS-LFDTIGES 74

Query: 75  NVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVD---PADVRKQKGEDFE 131
            +++VI S+ Y  S WC+DEL KI E  ++ +   +  +FY +D     D+  + G++F 
Sbjct: 75  KIALVIFSEGYCESHWCMDELVKIKEYMDQNR-LIIIPIFYRLDLDVVKDLTGKFGDNFW 133

Query: 132 RVFAKYEEEFKENHEKVLKWRAALTTVASL 161
            +  KY+ E K+ H    KW  AL +V  L
Sbjct: 134 DLVDKYQPEPKKLH----KWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 86/166 (51%), Gaps = 10/166 (6%)

Query: 7   SSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSE 66
           +SSS+  +   +   VF+ FRG D R +F   L  AL R   I    DE    G+E+++ 
Sbjct: 2   ASSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPAL-REANINVFIDENEFLGSEMANL 60

Query: 67  LSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRK---VFAVFYGVDPADVR 123
           L++ IEES +++VI S ++  S  CL+ELAKI E    RKD+    V  +FY V P+ V+
Sbjct: 61  LTR-IEESELALVIFSVDFTRSHRCLNELAKIKE----RKDQGRLIVIPIFYKVKPSAVK 115

Query: 124 KQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDR 169
             +G+ F   F   E   +       KW+ AL ++    G  L ++
Sbjct: 116 FLEGK-FGDNFRALERNNRHMLPITQKWKEALESIPGSIGMPLAEQ 160

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 28/151 (18%)

Query: 20  YDVFLSFRGEDTRN-NFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
           YDV + +   D  N +F  +L  +L R G   +      ++ NE+      A+ +  V I
Sbjct: 668 YDVVIRYGRADISNEDFISHLRASLCRRGISVY------EKFNEVD-----ALPKCRVLI 716

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYE 138
           ++L+  Y  S      L  I+E     +DR V+ +FY + P D      +++ER + + E
Sbjct: 717 IVLTSTYVPS-----NLLNILE-HQHTEDRVVYPIFYRLSPYDFVCNS-KNYERFYLQDE 769

Query: 139 EEFKENHEKVLKWRAALTTVASLAGWHLQDR 169
            +         KW+AAL  +  + G+ L D+
Sbjct: 770 PK---------KWQAALKEITQMPGYTLTDK 791

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.762	0.138	0.537	5e-45
105922482	1121	TIR-NBS-LRR type disease resistance prot	0.735	0.143	0.544	2e-44
224130518	1121	tir-nbs-lrr resistance protein [Populus	0.735	0.143	0.544	2e-44
147845097	826	hypothetical protein VITISV_009816 [Viti	0.799	0.211	0.508	6e-42
224145716	532	tir-nbs-lrr resistance protein [Populus	0.712	0.293	0.561	1e-41
147802475	1244	hypothetical protein VITISV_027841 [Viti	0.675	0.118	0.576	2e-41
359493273	1233	PREDICTED: TMV resistance protein N-like	0.675	0.120	0.576	2e-41
359493295	577	PREDICTED: TMV resistance protein N-like	0.844	0.320	0.477	3e-41
357462269	1743	TIR-NBS-LRR-TIR type disease resistance	0.680	0.085	0.576	1e-40
147773120	164	hypothetical protein VITISV_035615 [Viti	0.748	1.0	0.555	1e-40

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 94/175 (53%), Positives = 129/175 (73%), Gaps = 8/175 (4%)

Query: 1   MAASHTSSSSTHHQILQSK------YDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDD 54
           MAA+ +  ++T      ++      Y VFLSFRGEDTR NFT +L++ L R   + FKDD
Sbjct: 1   MAATSSRCNTTSPPFSPTQNNCKWTYHVFLSFRGEDTRKNFTGHLYSGLSRFKLLVFKDD 60

Query: 55  ETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVF 114
           E L++G  I+ EL KAIE+S  S+++LSKNYASS WCLDELAKI+ECG++ K +K+F VF
Sbjct: 61  EKLEKGKVIAPELLKAIEQSMFSVIVLSKNYASSSWCLDELAKIIECGDQ-KGQKIFPVF 119

Query: 115 YGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDR 169
           Y V+P+DVRKQ G  F+  FAK+EE+++EN +KV KWRAA+T VA+L+GW  ++R
Sbjct: 120 YDVEPSDVRKQTG-SFQDDFAKHEEKYRENIDKVRKWRAAMTQVANLSGWTSKNR 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922482|gb|ABF81419.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/169 (54%), Positives = 123/169 (72%), Gaps = 8/169 (4%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           MAAS++ +++      + KYDVFLSFRGEDTR +FTD+L+TAL   G I F+DD+ L+RG
Sbjct: 1   MAASYSRTTT------RWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERG 54

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
           NEIS EL +AI++S  S+++ S+NY SS WCL+EL KIVEC  K+  + V  VFY VDP+
Sbjct: 55  NEISRELLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVEC-MKQGRQTVIPVFYDVDPS 113

Query: 121 DVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDR 169
           +VR Q G   ++ FA +EE FK+N EKV  WR A+  VA+L+GW LQDR
Sbjct: 114 EVRNQTGR-LQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQDR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130518|ref|XP_002328629.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222838611|gb|EEE76976.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 92/169 (54%), Positives = 123/169 (72%), Gaps = 8/169 (4%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           MAAS++ +++      + KYDVFLSFRGEDTR +FTD+L+TAL   G I F+DD+ L+RG
Sbjct: 1   MAASYSRTTT------RWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERG 54

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
           NEIS EL +AI++S  S+++ S+NY SS WCL+EL KIVEC  K+  + V  VFY VDP+
Sbjct: 55  NEISRELLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVEC-MKQGRQTVIPVFYDVDPS 113

Query: 121 DVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDR 169
           +VR Q G   ++ FA +EE FK+N EKV  WR A+  VA+L+GW LQDR
Sbjct: 114 EVRNQTGR-LQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQDR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845097|emb|CAN78476.1| hypothetical protein VITISV_009816 [Vitis vinifera]

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 95/187 (50%), Positives = 122/187 (65%), Gaps = 12/187 (6%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           MA+S TSS          ++DVFLSFRGEDTR NFTD+L++AL   G   F+DDE L+RG
Sbjct: 1   MASSGTSS-------FXXRWDVFLSFRGEDTRXNFTDHLYSALTSRGIHTFRDDEGLERG 53

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            EI   L KAIEES VSIV+ SKNYA S WCLDEL KI+E   + K + V  VFY VDP+
Sbjct: 54  GEIQPSLLKAIEESKVSIVVFSKNYAHSQWCLDELYKIME-SRREKGQIVVPVFYHVDPS 112

Query: 121 DVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFN 180
           DVRKQ G  F + FA+Y+   K   E+VL+WRAALT    L+GWH++  +   I  ++  
Sbjct: 113 DVRKQTG-SFGKAFARYK---KVTKERVLRWRAALTQAGGLSGWHVEHGYESQIIXVIVG 168

Query: 181 YLFTLII 187
            +  ++I
Sbjct: 169 RISKMLI 175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145716|ref|XP_002325741.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|224145719|ref|XP_002325742.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862616|gb|EEF00123.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862617|gb|EEF00124.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 113/162 (69%), Gaps = 6/162 (3%)

Query: 7   SSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSE 66
           SSSS H    +  YDVFLSFRG+DTR NFTD+L+TALI+ G   F+DD  L RG EIS +
Sbjct: 1   SSSSRH----RWNYDVFLSFRGKDTRKNFTDHLYTALIQAGIHTFRDDNELPRGEEISPQ 56

Query: 67  LSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQK 126
           L KAIE S +SIV+ SK YASS WCLDEL KIVEC  ++ D+ V  +FY  +P+DVRKQ 
Sbjct: 57  LVKAIEGSRISIVVFSKQYASSRWCLDELVKIVEC-RQKIDQVVLPIFYDTEPSDVRKQT 115

Query: 127 GEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQD 168
           G  + + F ++EE FKE  EKV KWR AL    +L+GW L +
Sbjct: 116 GS-YAKAFDEHEEHFKEEMEKVNKWRGALAEAGNLSGWGLNN 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera]

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/151 (57%), Positives = 108/151 (71%), Gaps = 3/151 (1%)

Query: 20  YDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIV 79
           YDVFLSFRGEDTR +FTD+L+ AL+  G   F+DDE L+RG EI+ EL KAIEES +S+V
Sbjct: 17  YDVFLSFRGEDTRRSFTDHLYAALVEKGVRTFRDDEELERGKEIAPELLKAIEESRISVV 76

Query: 80  ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEE 139
           + SKNYA S WC+DEL KI+EC  K K + V  VFY VDP  VRKQ G  F   FA + E
Sbjct: 77  VFSKNYARSGWCMDELVKIIEC-MKAKGQTVLPVFYDVDPTHVRKQTG-SFMEAFASHGE 134

Query: 140 EFKENHEKVLKWRAALTTVASLAGWHLQDRF 170
           +  E  E+  +WRAALT  A+L+GWHLQ+ +
Sbjct: 135 D-TEVIERAKRWRAALTQAANLSGWHLQNGY 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 87/151 (57%), Positives = 108/151 (71%), Gaps = 3/151 (1%)

Query: 20  YDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIV 79
           YDVFLSFRGEDTR +FTD+L+ AL+  G   F+DDE L+RG EI+ EL KAIEES +S+V
Sbjct: 17  YDVFLSFRGEDTRRSFTDHLYAALVEKGVRTFRDDEELERGKEIAPELLKAIEESRISVV 76

Query: 80  ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEE 139
           + SKNYA S WC+DEL KI+EC  K K + V  VFY VDP  VRKQ G  F   FA + E
Sbjct: 77  VFSKNYARSGWCMDELVKIIEC-MKAKGQTVLPVFYDVDPTHVRKQTG-SFMEAFASHGE 134

Query: 140 EFKENHEKVLKWRAALTTVASLAGWHLQDRF 170
           +  E  E+  +WRAALT  A+L+GWHLQ+ +
Sbjct: 135 D-TEVIERAKRWRAALTQAANLSGWHLQNGY 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493295|ref|XP_002273513.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/197 (47%), Positives = 125/197 (63%), Gaps = 12/197 (6%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           MA+S TSS        Q ++DVFLSFRGEDTR NFTD+L++AL       F+DDE L+RG
Sbjct: 1   MASSGTSS-------FQWRWDVFLSFRGEDTRFNFTDHLYSALTSRYIHTFRDDEGLERG 53

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            EI   L KAIE+S +S+V+ S+NYA S WCLDEL KI++C ++ K +KV  +FY VDP+
Sbjct: 54  GEIQPSLLKAIEDSMISVVVFSENYAHSKWCLDELEKIMQC-SREKGQKVLPIFYHVDPS 112

Query: 121 DVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFPLIYLLLFN 180
           DVRKQ G  F   FA+Y        E+VL+WRAAL+    LAGWH+   +   I  ++  
Sbjct: 113 DVRKQTG-SFGEAFARYGRYGNVTEERVLRWRAALSQAGGLAGWHVMHGYESQIIKVIVR 171

Query: 181 YLFTLIIF---CLFSGD 194
            +  ++I     LF GD
Sbjct: 172 RISKMLISRPELLFIGD 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462269|ref|XP_003601416.1| TIR-NBS-LRR-TIR type disease resistance protein [Medicago truncatula] gi|355490464|gb|AES71667.1| TIR-NBS-LRR-TIR type disease resistance protein [Medicago truncatula]

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/151 (57%), Positives = 110/151 (72%), Gaps = 2/151 (1%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
           KY VFLSFRGEDTR  FTD+L+ AL+R   I F+DDE L RG  IS +L  AIEES  ++
Sbjct: 11  KYHVFLSFRGEDTRLGFTDHLYAALVRKSIITFRDDEELARGEVISQKLLLAIEESLSAV 70

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYE 138
           +I+SKNYA+S WCLDEL KI+E   +   ++VF VFYGVDP+DVR Q+G  F   F K+E
Sbjct: 71  LIISKNYANSAWCLDELVKILE-SKRLLGQQVFPVFYGVDPSDVRNQRGS-FAEAFKKHE 128

Query: 139 EEFKENHEKVLKWRAALTTVASLAGWHLQDR 169
           E+F E+ EKV KWR AL  VA+L+GW  +D+
Sbjct: 129 EKFSESKEKVQKWRDALREVANLSGWDSKDQ 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773120|emb|CAN62709.1| hypothetical protein VITISV_035615 [Vitis vinifera]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/171 (55%), Positives = 118/171 (69%), Gaps = 7/171 (4%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           MA+  +SSSSTH    Q KYDVFLSFRGEDT  +FTD+LH AL + G   F DD+ L RG
Sbjct: 1   MASLSSSSSSTH----QWKYDVFLSFRGEDTGKSFTDHLHRALFQRGVKTFMDDK-LSRG 55

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            EIS  L KAIEES  S+++ S+NYASS WCL+EL KI++C  K        VFY VDP+
Sbjct: 56  QEISPALVKAIEESRFSVIVFSENYASSTWCLEELVKIIDC-TKVMGHAALPVFYNVDPS 114

Query: 121 DVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFF 171
            VRKQ G  F + FAK+EE +KE  EKV+KWR ALT  A+++GW  +D +F
Sbjct: 115 HVRKQTG-SFAQAFAKHEEVYKEQMEKVIKWRVALTEAANISGWDSRDGYF 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.652	0.52	0.527	5.1e-35
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.652	0.385	0.520	1.1e-34
TAIR|locus:2032602	1163	AT1G72860 [Arabidopsis thalian	0.634	0.119	0.537	9.1e-33
TAIR|locus:2032597	379	AT1G72950 [Arabidopsis thalian	0.666	0.385	0.503	1.4e-32
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.648	0.124	0.5	1.3e-31
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.648	0.373	0.5	1.6e-31
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.648	0.102	0.482	2.9e-31
TAIR|locus:2823998	380	AT1G17615 [Arabidopsis thalian	0.643	0.371	0.482	2.3e-30
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.648	0.806	0.486	4.9e-30
TAIR|locus:2032713	363	AT1G72900 [Arabidopsis thalian	0.648	0.391	0.472	2.1e-29

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 77/146 (52%), Positives = 102/146 (69%)

Query:    18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
             +KYDVFLSFRG DTR NF   L+  L+R     FKDD+ L+ G  IS EL +AIEES  +
Sbjct:     7 TKYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFA 66

Query:    78 IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKY 137
             +V++S NYA+SPWCLDEL KI++  NK     V  +FYGVDP  +R+Q G+  E+ F K+
Sbjct:    67 VVVVSVNYAASPWCLDELVKIMDFENKGSIT-VMPIFYGVDPCHLRRQIGDVAEQ-FKKH 124

Query:   138 EEEFKENHEKVLKWRAALTTVASLAG 163
             E   +E+HEKV  WR ALT++AS++G
Sbjct:   125 EAR-EEDHEKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 76/146 (52%), Positives = 101/146 (69%)

Query:    18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
             +KYDVFLSFRG DTR NF   L+   +R     FKDD+ L+ G  IS EL +AIEES  +
Sbjct:     7 TKYDVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIEESKFA 66

Query:    78 IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKY 137
             +V++S NYA+SPWCLDEL KI++  NK     V  +FYGVDP  +R+Q G+  E+ F K+
Sbjct:    67 VVVVSVNYAASPWCLDELVKIMDFENKGSIT-VMPIFYGVDPCHLRRQIGDVAEQ-FKKH 124

Query:   138 EEEFKENHEKVLKWRAALTTVASLAG 163
             E   +E+HEKV  WR ALT++AS++G
Sbjct:   125 EAR-EEDHEKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2032602 AT1G72860 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 9.1e-33, P = 9.1e-33
 Identities = 78/145 (53%), Positives = 98/145 (67%)

Query:    19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
             KYDVFLSFRGEDTR N   +LH  L+  G + FKDD+ L+ G+ IS E+S+AI+ S  ++
Sbjct:    11 KYDVFLSFRGEDTRKNIVSHLHKQLVDKGVVTFKDDKKLELGDSISEEISRAIQNSTYAL 70

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYE 138
             VILS+NYASS WCLDEL  +++   K K  KV  +FYGVDP+ VR Q G  F   F KY+
Sbjct:    71 VILSENYASSSWCLDELRMVMDLHLKNKI-KVVPIFYGVDPSHVRHQTGS-F--TFDKYQ 126

Query:   139 EEFKENHEKVLKWRAALTTVASLAG 163
             +    N  KV  WR ALT +ASLAG
Sbjct:   127 DSKMPN--KVTTWREALTQIASLAG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032597 AT1G72950 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 77/153 (50%), Positives = 101/153 (66%)

Query:    19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
             K+DVFLSFRG DTR +F   L+  LIR     FKDD+ L  G  I+ EL +AIE S  ++
Sbjct:    10 KFDVFLSFRGLDTRRSFISFLYKELIRRNIRTFKDDKELKNGRRITPELIRAIEGSRFAV 69

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYE 138
             V++S NYA+S WCL+EL KI++  N     KV  +FYGVDP  VR+Q GE  E+ F K+E
Sbjct:    70 VVVSVNYAASRWCLEELVKIMDFENMGS-LKVMPIFYGVDPCHVRRQIGEVAEQ-FKKHE 127

Query:   139 EEFKENHEKVLKWRAALTTVASLAG---WHLQD 168
                +E+HEKVL WR ALT +AS++G   W  +D
Sbjct:   128 G--REDHEKVLSWRQALTNLASISGDCSWKWED 158

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 359 (131.4 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 72/144 (50%), Positives = 97/144 (67%)

Query:    20 YDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIV 79
             YDVFLSFRGEDTR  FT +L+  L   G   F+DD+ L+ G  I  EL KAIEES  +IV
Sbjct:    12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query:    80 ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEE 139
             + S+NYA+S WCL+EL KI+EC  + K + V  +FY VDP+ VR QK E F + F ++E 
Sbjct:    72 VFSENYATSRWCLNELVKIMECKTRFK-QTVIPIFYDVDPSHVRNQK-ESFAKAFEEHET 129

Query:   140 EFKENHEKVLKWRAALTTVASLAG 163
             ++K++ E + +WR AL   A+L G
Sbjct:   130 KYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 73/146 (50%), Positives = 95/146 (65%)

Query:    18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
             +KYDVFLSFRG DTR NF   L+  L+R     FKDD+ L+ G  ISSEL + IE S  +
Sbjct:     7 TKYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEVSRFA 66

Query:    78 IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKY 137
             +V++S+ YA+S WCLDEL  I++   K+    V  +FYGV+P  VR Q G   E+ F K+
Sbjct:    67 VVVVSETYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQ-FKKH 124

Query:   138 EEEFKENHEKVLKWRAALTTVASLAG 163
                 +E+HEKVLKWR ALT  A L+G
Sbjct:   125 GS--REDHEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 2.9e-31, P = 2.9e-31
 Identities = 71/147 (48%), Positives = 103/147 (70%)

Query:    19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
             KYDVFLSFRG DTR+NF D+L+ AL ++    F+D+E ++RG+EISS L   +E+S  S+
Sbjct:    13 KYDVFLSFRGADTRDNFGDHLYKAL-KDKVRVFRDNEGMERGDEISSSLKAGMEDSAASV 71

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRK-DRKVFAVFYGVDPADVRKQKGEDFERVFAKY 137
             +++S+NY+ S WCLDELA +  C  K   DR++  +FY VDP+ VRKQ  +  ++ F ++
Sbjct:    72 IVISRNYSGSRWCLDELAML--CKMKSSLDRRILPIFYHVDPSHVRKQS-DHIKKDFEEH 128

Query:   138 EEEFKENHEKVLKWRAALTTVASLAGW 164
             +  F E  EKV +WR ALT V +LAG+
Sbjct:   129 QVRFSEEKEKVQEWREALTLVGNLAGY 155

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2823998 AT1G17615 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 70/145 (48%), Positives = 95/145 (65%)

Query:    19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
             K+DVFLSFRG+DTR  F   L+  LI  G   FKDD  L  G  I+S+L  AIE S +++
Sbjct:    14 KFDVFLSFRGKDTRRTFISFLYKELIEMGIRTFKDDVELQSGRRIASDLLAAIENSKIAV 73

Query:    79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYE 138
             VI+SKNY++SPWCL EL  I++   K+    V  +FY V+PA VR+Q  E   + F K+E
Sbjct:    74 VIISKNYSASPWCLQELVMIMDV-EKKGSIIVMPIFYNVEPAHVRRQI-EQVAKQFRKHE 131

Query:   139 EEFKENHEKVLKWRAALTTVASLAG 163
                +EN+E V+ WR ALT +AS++G
Sbjct:   132 G--RENYETVVSWRQALTNLASISG 154

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 71/146 (48%), Positives = 93/146 (63%)

Query:    18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
             +KYDVFLSFRG DTR+NF   L+  L+R     FKDD+ L+ G   S EL   IE S  +
Sbjct:     7 TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66

Query:    78 IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKY 137
             +V++S+NYA+S WCLDEL  I++   K+    V  +FYGV+P  VR Q G   E+ F K+
Sbjct:    67 VVVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQ-FKKH 124

Query:   138 EEEFKENHEKVLKWRAALTTVASLAG 163
                 +E+ EKVLKWR ALT  A L+G
Sbjct:   125 AS--REDPEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2032713 AT1G72900 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 68/144 (47%), Positives = 92/144 (63%)

Query:    20 YDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIV 79
             YDVFLSFRG DTR  F   L+  L+      FKDD+ L+ G  IS EL  AIE+S  ++V
Sbjct:    10 YDVFLSFRGPDTRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVV 69

Query:    80 ILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEE 139
             ++S NYA+S WCLDEL KI++    +    V  +FYGV+P  +R+Q G+  E+ F K+E 
Sbjct:    70 VVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQ-FKKHEA 128

Query:   140 EFKENHEKVLKWRAALTTVASLAG 163
               K+  EKVLKWR AL  +A ++G
Sbjct:   129 REKDL-EKVLKWRQALAALADISG 151

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
pfam01582	135	pfam01582, TIR, TIR domain	4e-37
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-36
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	7e-36
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	3e-11
pfam13676	102	pfam13676, TIR_2, TIR domain	1e-10
pfam08937	122	pfam08937, DUF1863, MTH538 TIR-like domain (DUF186	7e-04

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  126 bits (318), Expect = 4e-37
 Identities = 55/136 (40%), Positives = 76/136 (55%), Gaps = 2/136 (1%)

Query: 22  VFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVIL 81
           VF+SF G+D R+ F  +L   L   G     DD     G  I   L +AIE+S  +IVI 
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 82  SKNYASSPWCLDELAKIVECGNK-RKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEE 140
           S NYASS WCLDEL +IV+C  +    + +  +FY VDP+DVR Q G+ F + F K  + 
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGK-FGKAFLKTLKW 119

Query: 141 FKENHEKVLKWRAALT 156
             +  +K+  W+ AL 
Sbjct: 120 SGDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  133 bits (337), Expect = 5e-36
 Identities = 74/166 (44%), Positives = 98/166 (59%), Gaps = 11/166 (6%)

Query: 2   AASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGN 61
            AS +SSS          YDVF SF GED R  F  +    L R   IAFKD+E ++R  
Sbjct: 1   MASSSSSSRNW------VYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNE-IERSQ 53

Query: 62  EISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPAD 121
            +  EL +AI +S +++V+ SKNYASS WCL+EL +IV C  +   + V  VFYG+DP+ 
Sbjct: 54  SLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRC-KEELGQLVIPVFYGLDPSH 112

Query: 122 VRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQ 167
           VRKQ G DF   F K  +  K   EK+  W+ ALT VA++ G+H Q
Sbjct: 113 VRKQTG-DFGEAFEKTCQN-KTEDEKIQ-WKQALTDVANILGYHSQ 155

syringae 6; Provisional. Length = 1153

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  122 bits (309), Expect = 7e-36
 Identities = 61/144 (42%), Positives = 82/144 (56%), Gaps = 5/144 (3%)

Query: 19  KYDVFLSFRG-EDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
           +YDVF+S+ G ED RN F  +L   L   G   F DD     G     E+ +AIE+S ++
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIA 58

Query: 78  IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKY 137
           IV+LS NYA S WCLDEL   +E   +    +V  +FY V P+DVRKQ G+ F +VF K 
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGK-FRKVFKKN 117

Query: 138 EEEFKENHEKVLKWRAALTTVASL 161
             ++ E+ EK   W+ AL  V S 
Sbjct: 118 YLKWPED-EKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 59.8 bits (145), Expect = 3e-11
 Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 21  DVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVI 80
           DVF++ RG DT+      L+  L R     F D++ +  G+++  +++ AI    V + +
Sbjct: 28  DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAV 87

Query: 81  LSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVR 123
            S  Y  S +CL ELA I+E       ++V  +F  V P+ +R
Sbjct: 88  FSPRYCESYFCLHELALIME-----SKKRVIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 56.0 bits (136), Expect = 1e-10
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 10/101 (9%)

Query: 22  VFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVIL 81
           VF+S+   D    + + L  AL   G   + D + +  G +   E+ +A+  ++V +V+L
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWD-IPPGEDWRDEIEEALRSADVVLVLL 57

Query: 82  SKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADV 122
           S  Y +SPWC  E           + +++  V   ++  ++
Sbjct: 58  SPAYLASPWCRAEWGAA-----LERGKRLIPVR--LEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

>gnl|CDD|220076 pfam08937, DUF1863, MTH538 TIR-like domain (DUF1863)

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 23/88 (26%)

Query: 20 YDVFLSFRGEDTRNNFTDNLHTALIRN---------------GFIAFKDDETLDRGNE-- 62
            VF+SF  ED      D      +RN               GF    D E + R N+  
Sbjct: 1  RKVFISFHHED------DVWRYDQLRNLGANEGINGAENIDFGFFDVNDWEPIKRPNDAY 54

Query: 63 ISSELSKAIEESNVSIVILSKNYASSPW 90
          I   +   I+ S+V+IV++ +  AS  W
Sbjct: 55 IKRWIRDQIKGSSVTIVLVGEETASRKW 82

This domain adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein. This domain is similar to the TIR domain. Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN03194	187	putative disease resistance protein; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.94
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.92
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.7
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.98
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.53
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	97.53
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	96.4
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	90.18
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	86.72
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	80.86

>PLN03210 Resistant to P

Probab=100.00  E-value=4.2e-49  Score=402.66  Aligned_cols=189  Identities=38%  Similarity=0.637  Sum_probs=171.3

Q ss_pred             CCCCCCeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHH
Q 027772           13 HQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL   92 (219)
Q Consensus        13 s~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl   92 (219)
                      |+++.++|||||||||+|+|++|++||+++|.++||++|+|+ ++++|+.|.+++.+||++|+++|||||++||+|.|||
T Consensus         6 ~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl   84 (1153)
T PLN03210          6 SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCL   84 (1153)
T ss_pred             CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHH
Confidence            344678999999999999999999999999999999999988 6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccCCCeEEEEEeeeCCcccccccccchHHHHHHHHHHhccChHHHHHHHHHHHHhhcccceeecCC--c
Q 027772           93 DELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDR--F  170 (219)
Q Consensus        93 ~EL~~i~~~~~~~~~~~ViPVFy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~Wr~AL~~va~~~G~~~~~~--~  170 (219)
                      +||++|++| +++.+++|+||||+|+|+|||+|+| .||++|.+++++.  +++++++||+||++||+++||++.++  +
T Consensus        85 ~el~~i~~~-~~~~~~~v~pvfy~v~p~~v~~~~g-~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~~~~~E  160 (1153)
T PLN03210         85 NELLEIVRC-KEELGQLVIPVFYGLDPSHVRKQTG-DFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQNWPNE  160 (1153)
T ss_pred             HHHHHHHHh-hhhcCceEEEEEecccHHHHhhccc-hHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecCCCCCH
Confidence            999999999 8889999999999999999999999 9999999998754  46899999999999999999999765  4


Q ss_pred             hhHHHHHHHhhhhhh----------------------hhhhhccCCCccceeeccCCe
Q 027772          171 FPLIYLLLFNYLFTL----------------------IIFCLFSGDVSPLAFYKHTHV  206 (219)
Q Consensus       171 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~i  206 (219)
                      ..++.+|++++...+                      .+++..+.+++.+|+|||.||
T Consensus       161 ~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGi  218 (1153)
T PLN03210        161 AKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGI  218 (1153)
T ss_pred             HHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCC
Confidence            556667777765533                      446667889999999999996

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=5.3e-47  Score=315.54  Aligned_cols=155  Identities=24%  Similarity=0.420  Sum_probs=135.2

Q ss_pred             CCCCCCCeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhH
Q 027772           12 HHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWC   91 (219)
Q Consensus        12 ss~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wC   91 (219)
                      +|++...+|||||||||+|+|++|++||+.+|+++||+||+|+.++++|+.|.+.|.+||++|+++|+|||++|++|.||
T Consensus        19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC   98 (187)
T PLN03194         19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC   98 (187)
T ss_pred             cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence            33444568999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccCCCeEEEEEeeeCCcccccc-cccchHHHHHHHHHHhccChHHHHHHHHHHHHhhcccceeecCC-
Q 027772           92 LDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQ-KGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDR-  169 (219)
Q Consensus        92 l~EL~~i~~~~~~~~~~~ViPVFy~v~psdVr~q-~g~~f~~~f~~~~~~~~~~~~~v~~Wr~AL~~va~~~G~~~~~~-  169 (219)
                      |+||++|++|     ++.||||||+|+|+|||+| .| .             .+.+++++||+||++||+++||+++.. 
T Consensus        99 LdEL~~I~e~-----~~~ViPIFY~VdPsdVr~q~~~-~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~  159 (187)
T PLN03194         99 LHELALIMES-----KKRVIPIFCDVKPSQLRVVDNG-T-------------CPDEEIRRFNWALEEAKYTVGLTFDSLK  159 (187)
T ss_pred             HHHHHHHHHc-----CCEEEEEEecCCHHHhhccccC-C-------------CCHHHHHHHHHHHHHHhccccccCCCCC
Confidence            9999999998     3589999999999999997 44 3             135899999999999999999988643 


Q ss_pred             --chhHHHHHHHhhhhhh
Q 027772          170 --FFPLIYLLLFNYLFTL  185 (219)
Q Consensus       170 --~~~~~~~~~~~~~~~~  185 (219)
                        +..++..++..++..+
T Consensus       160 ~~e~e~i~~iv~~v~k~l  177 (187)
T PLN03194        160 GNWSEVVTMASDAVIKNL  177 (187)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence              3455555555555443

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.94  E-value=9.6e-28  Score=191.19  Aligned_cols=134  Identities=34%  Similarity=0.554  Sum_probs=117.1

Q ss_pred             EEEecccccCccchHHHHHHHHHcC--CeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHHHHHHHHH
Q 027772           22 VFLSFRGEDTRNNFTDNLHTALIRN--GFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIV   99 (219)
Q Consensus        22 VFISfrg~D~r~~Fv~~L~~aL~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~EL~~i~   99 (219)
                      |||||++.+.+..|+++|..+|+++  |+++|++++|+.+|..+.+++.++|++|+++|+|||++|+.|.||+.||..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999444678999999999999  99999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccC-CCeEEEEEeeeCCcccc-cccccchHHHHHHHHHHhccC--hHHHHHHHHHHH
Q 027772          100 ECGNKRK-DRKVFAVFYGVDPADVR-KQKGEDFERVFAKYEEEFKEN--HEKVLKWRAALT  156 (219)
Q Consensus       100 ~~~~~~~-~~~ViPVFy~v~psdVr-~q~g~~f~~~f~~~~~~~~~~--~~~v~~Wr~AL~  156 (219)
                      +++...+ ..+|+||||++.+++++ .+.+ .|+..|..+.+....+  ..+...|++++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~-~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSL-RFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHH-HHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhH-HHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            9954433 58999999999999999 7899 9999998877655443  468899999875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.92  E-value=2.3e-24  Score=169.44  Aligned_cols=138  Identities=42%  Similarity=0.720  Sum_probs=116.5

Q ss_pred             eeeEEEeccc-ccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHHHHHHH
Q 027772           19 KYDVFLSFRG-EDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAK   97 (219)
Q Consensus        19 ~yDVFISfrg-~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~EL~~   97 (219)
                      .|||||||++ ++....|+.+|...|...|+.+|.|+.. ..|.... +|.++|++|+++|+|+||+|..|.||..|+..
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~-~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~   78 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVA   78 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcc-cccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence            4999999999 4566789999999999999999999753 3333333 99999999999999999999999999999999


Q ss_pred             HHHhccccCCCeEEEEEeeeCCcccccccccchHHHHHHHHHHhccChHHHHHHHHHHHHhhc
Q 027772           98 IVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVAS  160 (219)
Q Consensus        98 i~~~~~~~~~~~ViPVFy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~Wr~AL~~va~  160 (219)
                      ++++..+.....||||+++..|+++.++.+ .++..+..+..++.++..+ +.|+.++..+.+
T Consensus        79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~-~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       79 ALENALEEGGLRVIPIFYEVIPSDVRKQPG-KFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHHcCCCeEEEEEEecChHHHHhccc-HHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            998833346789999999999999999999 9999998886666543333 789999988764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.70  E-value=5.8e-18  Score=127.02  Aligned_cols=87  Identities=34%  Similarity=0.601  Sum_probs=75.5

Q ss_pred             EEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHHHHHHHHHHh
Q 027772           22 VFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVEC  101 (219)
Q Consensus        22 VFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~EL~~i~~~  101 (219)
                      |||||+++|  ..++..|...|++.|+++|+|. ++.+|+.+.+.+.++|++|+..|+++|++|..|+||..|+..+.+.
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~~   77 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWKR   77 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHCT
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHHC
Confidence            899999999  3699999999999999999997 8999999999999999999999999999999999999999998443


Q ss_pred             ccccCCCeEEEEEee
Q 027772          102 GNKRKDRKVFAVFYG  116 (219)
Q Consensus       102 ~~~~~~~~ViPVFy~  116 (219)
                           ++.|+||.++
T Consensus        78 -----~~~iipv~~~   87 (102)
T PF13676_consen   78 -----GKPIIPVRLD   87 (102)
T ss_dssp             -----SESEEEEECS
T ss_pred             -----CCEEEEEEEC
Confidence                 5699999954

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.98  E-value=1.1e-09  Score=102.76  Aligned_cols=94  Identities=28%  Similarity=0.454  Sum_probs=80.1

Q ss_pred             CCCCeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccC--------
Q 027772           15 ILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA--------   86 (219)
Q Consensus        15 ~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~--------   86 (219)
                      .-..+.|||||||.. +....++-|...|+.+|++||+|-+.+..|+. .+.+.+.|...+.+|+|++||..        
T Consensus       608 ~~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~n  685 (832)
T KOG3678|consen  608 MLSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDN  685 (832)
T ss_pred             cccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence            345689999999875 56789999999999999999999888988865 56899999999999999999965        


Q ss_pred             CChhHHHHHHHHHHhccccCCCeEEEEEe
Q 027772           87 SSPWCLDELAKIVECGNKRKDRKVFAVFY  115 (219)
Q Consensus        87 ~S~wCl~EL~~i~~~~~~~~~~~ViPVFy  115 (219)
                      .-.|...||..+++|     ++.|||||-
T Consensus       686 CeDWVHKEl~~Afe~-----~KNIiPI~D  709 (832)
T KOG3678|consen  686 CEDWVHKELKCAFEH-----QKNIIPIFD  709 (832)
T ss_pred             HHHHHHHHHHHHHHh-----cCCeeeeec
Confidence            346777788888887     789999994

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.53  E-value=2e-07  Score=73.48  Aligned_cols=91  Identities=23%  Similarity=0.404  Sum_probs=48.8

Q ss_pred             eeEEEecccccCccchHHHHHHHHHcC-------Ceee----------EecCCCCcCCccchHHHHHHHHhcCceEEEEe
Q 027772           20 YDVFLSFRGEDTRNNFTDNLHTALIRN-------GFIA----------FKDDETLDRGNEISSELSKAIEESNVSIVILS   82 (219)
Q Consensus        20 yDVFISfrg~D~r~~Fv~~L~~aL~~~-------Gi~v----------f~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S   82 (219)
                      |.|||||++.|.. ..+..|...+...       .+..          +.+..+....+.|...|.++|..|+++||+++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            6799999999843 3677777777663       2211          11222223445788899999999999999999


Q ss_pred             cccCCChhHHHHHHHHHHhccccCCCeEEEEEee
Q 027772           83 KNYASSPWCLDELAKIVECGNKRKDRKVFAVFYG  116 (219)
Q Consensus        83 ~ny~~S~wCl~EL~~i~~~~~~~~~~~ViPVFy~  116 (219)
                      ++...|.|+..|+..+++.     +..||-|.++
T Consensus        80 ~~T~~s~wV~~EI~~A~~~-----~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALKK-----GKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTTT--------EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHHC-----CCCEEEEECC
Confidence            9999999999999998775     7788888653

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=97.53  E-value=0.00041  Score=55.32  Aligned_cols=65  Identities=20%  Similarity=0.339  Sum_probs=52.0

Q ss_pred             eEEEecccccCc-cchHHHHHHHHHcC-CeeeEecCCCCcC--CccchHHHHHHHHhcCceEEEEeccc
Q 027772           21 DVFLSFRGEDTR-NNFTDNLHTALIRN-GFIAFKDDETLDR--GNEISSELSKAIEESNVSIVILSKNY   85 (219)
Q Consensus        21 DVFISfrg~D~r-~~Fv~~L~~aL~~~-Gi~vf~D~~~l~~--G~~i~~~i~~aI~~S~~~IvV~S~ny   85 (219)
                      -|||||+.+... ..-|..|...|++. |+.|.+|.-+...  +.....=+.+.+++++..|+|.||.|
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999985432 35689999999999 9999999766633  55666677888999999999999543

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=96.40  E-value=0.01  Score=46.98  Aligned_cols=78  Identities=18%  Similarity=0.242  Sum_probs=60.8

Q ss_pred             eEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEeccc-C------------C
Q 027772           21 DVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNY-A------------S   87 (219)
Q Consensus        21 DVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny-~------------~   87 (219)
                      .|||.|. +|.  ..+..+...|+..|+.+.+-.+....|..+.+.+.+...+++.+|++++|+= .            .
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            3899997 553  5778888899988887776555678999999999999999999999999952 2            1


Q ss_pred             ChhHHHHHHHHHHh
Q 027772           88 SPWCLDELAKIVEC  101 (219)
Q Consensus        88 S~wCl~EL~~i~~~  101 (219)
                      -...+.|+-.++..
T Consensus        78 R~NVifE~G~f~g~   91 (125)
T PF10137_consen   78 RQNVIFELGLFIGK   91 (125)
T ss_pred             ccceeehhhHHHhh
Confidence            23456777777654

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=90.18  E-value=0.98  Score=32.66  Aligned_cols=67  Identities=24%  Similarity=0.222  Sum_probs=46.9

Q ss_pred             eEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCC
Q 027772           21 DVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASS   88 (219)
Q Consensus        21 DVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S   88 (219)
                      .||||-.-.|.. .--..|.+.|.+.|.....-+.--..+....+.+++.|++|+++|.++-..|-..
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            389998777753 3446777788777765443221112355666788999999999999999999654

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=86.72  E-value=0.74  Score=41.00  Aligned_cols=99  Identities=21%  Similarity=0.117  Sum_probs=66.6

Q ss_pred             CCCeeeEEEecccccCccchHHHHHHHHH--cCCeeeEecCC---CCcCCccchHHHHHHH--HhcCceEEEEecccCCC
Q 027772           16 LQSKYDVFLSFRGEDTRNNFTDNLHTALI--RNGFIAFKDDE---TLDRGNEISSELSKAI--EESNVSIVILSKNYASS   88 (219)
Q Consensus        16 ~~~~yDVFISfrg~D~r~~Fv~~L~~aL~--~~Gi~vf~D~~---~l~~G~~i~~~i~~aI--~~S~~~IvV~S~ny~~S   88 (219)
                      ..+.||+=+||.|+- | +.|+....+++  ...+..|+|..   .+-+|+ +.+ ++.-+  +.|++.+|.+..||...
T Consensus       174 ~~~~~DiG~SFaGEA-R-~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~-~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         174 SEKPVDSGISFAGEA-R-NLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVS-TLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             cccccceeeEeehhh-h-hHHHHHHHhhhcccCCceeeeechhhccccCcc-HHH-hcccccCceEEEEEEEeCCceEEe
Confidence            467899999999985 4 79999999998  44578888853   233332 222 22222  25788899999999999


Q ss_pred             hhHHHHHHHHHHhccccCCCeEEEEEe-eeCCcc
Q 027772           89 PWCLDELAKIVECGNKRKDRKVFAVFY-GVDPAD  121 (219)
Q Consensus        89 ~wCl~EL~~i~~~~~~~~~~~ViPVFy-~v~psd  121 (219)
                      .||--|-..+-..   ..-....||-| +++.+.
T Consensus       250 ~~c~~E~~~~r~~---~~~d~~~rI~~~~~d~~a  280 (329)
T COG4916         250 STCHIEGLEGRLN---PILDTGFRIKYLYADNIA  280 (329)
T ss_pred             eeeccchhhcccc---ccccccceEEEEecCCcc
Confidence            9999998776443   12234556655 344443

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=80.86  E-value=17  Score=27.30  Aligned_cols=68  Identities=21%  Similarity=0.196  Sum_probs=49.4

Q ss_pred             cchHHHHHHHHHcCCeeeEecCC-CCc-------CCccchHHHHHHHHhcCceEEEEecccCCChhHHHHHHHHHHh
Q 027772           33 NNFTDNLHTALIRNGFIAFKDDE-TLD-------RGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVEC  101 (219)
Q Consensus        33 ~~Fv~~L~~aL~~~Gi~vf~D~~-~l~-------~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~EL~~i~~~  101 (219)
                      ..+...+.+.|++.|+.+|...+ +..       ....|...-.++|++|++.|+++...- .+.=+.-|+-.+...
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC
Confidence            46889999999999999887542 111       122344455678999999999997755 567788999998765

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		2e-30
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-28

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/146 (48%), Positives = 93/146 (63%), Gaps = 4/146 (2%)
Query: 18  SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVS 77
           +KYDVFLSFRG DTR+NF   L+  L+R     FKDD+ L+ G   S EL   IE S  +
Sbjct: 7   TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 78  IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKY 137
           +V++S+NYA+S WCLDEL  I++   K+    V  +FYGV+P  VR Q G   E+ F K+
Sbjct: 67  VVVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTGVLAEQ-FKKH 124
Query: 138 EEEFKENHEKVLKWRAALTTVASLAG 163
               +E+ EKVLKWR ALT  A L+G
Sbjct: 125 AS--REDPEKVLKWRQALTNFAQLSG 148

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/148 (42%), Positives = 91/148 (61%), Gaps = 3/148 (2%)
Query: 19  KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
           +Y+VFLSFRG DTR  FTD L+ +L R     F+DD+ L +G EI   L +AI++S + +
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYE 138
            I+S  YA S WCL ELA+IV    +   R +  +FY VDP+DVR Q G  +++ F K+ 
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGC-YKKAFRKHA 153
Query: 139 EEFKENHEKVLKWRAALTTVASLAGWHL 166
            +F  + + +  W+ AL  V  L GWH+
Sbjct: 154 NKF--DGQTIQNWKDALKKVGDLKGWHI 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	4e-85
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	9e-83
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	6e-66
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	2e-14
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	6e-08
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	4e-07
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	2e-04

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  249 bits (639), Expect = 4e-85
 Identities = 66/168 (39%), Positives = 95/168 (56%), Gaps = 7/168 (4%)

Query: 1   MAASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRG 60
           ++ S   S S        +Y+VFLSFRG DTR  FTD L+ +L R     F+DD+ L +G
Sbjct: 21  ISDSTNPSGSFP----SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKG 76

Query: 61  NEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120
            EI   L +AI++S + + I+S  YA S WCL ELA+IV    +   R +  +FY VDP+
Sbjct: 77  KEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPS 136

Query: 121 DVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQD 168
           DVR Q G  +++ F K+  +F    + +  W+ AL  V  L GWH+  
Sbjct: 137 DVRHQTG-CYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGK 181

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  242 bits (621), Expect = 9e-83
 Identities = 73/160 (45%), Positives = 94/160 (58%), Gaps = 8/160 (5%)

Query: 9   SSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELS 68
           SS       +KYDVFLSFRG DTR+NF   L+  L+R     FKDD+ L+ G   S EL 
Sbjct: 2   SSHT----ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELK 57

Query: 69  KAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGE 128
             IE S  ++V++S+NYA+S WCLDEL  I++   K+    V  +FYGV+P  VR Q G 
Sbjct: 58  SPIEVSRFAVVVVSENYAASSWCLDELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTG- 115

Query: 129 DFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQD 168
                F K+    +E+ EKVLKWR ALT  A L+G    D
Sbjct: 116 VLAEQFKKHAS--REDPEKVLKWRQALTNFAQLSGDCSGD 153

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  199 bits (508), Expect = 6e-66
 Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 5/153 (3%)

Query: 3   ASHTSSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNE 62
                 ++         +D+F+S   ED + +F + L   L   G   + DD +L  G+ 
Sbjct: 4   KPTAGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDS 62

Query: 63  ISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADV 122
           +   + K +  S   IV+LS ++    W   EL  + +        ++  +++ V   +V
Sbjct: 63  LRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQL-ESSGRSRILPIWHKVSKDEV 121

Query: 123 RKQKGEDFERVFAKYEEEFKENHEKVLKWRAAL 155
                       A        + ++++    A+
Sbjct: 122 ASFSP-TMADKLAFNTSTK--SVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 5/140 (3%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTAL--IRNGFIAFKDDETLDRGNEISSELSKAIEESNV 76
            YDV +    ED       +L + L         F        G  I SEL +A+  S+ 
Sbjct: 10  DYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAK 136
            +++++  +   PWC  ++ + +       +     +  G+  A    +    +      
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTE-APGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRG 126

Query: 137 YEEEFKENHEKVLKWRAALT 156
            +  F++  E V+++   L+
Sbjct: 127 PDGGFRQVKEAVMRYLQTLS 146

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 49.7 bits (118), Expect = 6e-08
 Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 12/120 (10%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTALI-----------RNGFIAFKDDETLDRGNEISSEL 67
            YD +LS+   D      +                    G+  F  D  L        ++
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 68  SKAIEESNVSIVILSKNYA-SSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQK 126
           ++ +++S   I++++ NY     W + EL   +       + KV  +        +  Q+
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRGIMNYQE 121

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 3/110 (2%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTAL--IRNGFIAFKDDETLDRGNEISSELSKAIEESNV 76
           ++  F+S+   D      + L   L       +    +   D G  IS  +   IE+S  
Sbjct: 35  RFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYK 93

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQK 126
           SI +LS N+  + WC  E               +  +     P      +
Sbjct: 94  SIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPTR 143

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 5/100 (5%)

Query: 20  YDVFLSFRGEDT---RNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNV 76
           YD F+S+   D     N     L        F           G  I   +  +IE+S+ 
Sbjct: 6   YDAFVSYSERDAYWVENLMVQELENF--NPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYG 116
           ++ +LS+N+  S W   EL           +     +   
Sbjct: 64  TVFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLE 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.95
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.92
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.91
2js7_A	160	Myeloid differentiation primary response protein M	99.91
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.9
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.74
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	97.92
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.01
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	83.89
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	83.19

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=2.9e-56  Score=376.50  Aligned_cols=175  Identities=37%  Similarity=0.652  Sum_probs=151.7

Q ss_pred             CCCCCCCCCCCCeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccC
Q 027772            7 SSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA   86 (219)
Q Consensus         7 ~~sssss~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~   86 (219)
                      +|+++|++++.++|||||||||+|+|++|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|+|||+||+
T Consensus        23 ~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa  102 (204)
T 3ozi_A           23 DSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYA  102 (204)
T ss_dssp             -----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGG
T ss_pred             cCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccc
Confidence            34556778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHhccc-cCCCeEEEEEeeeCCcccccccccchHHHHHHHHHHhccChHHHHHHHHHHHHhhccccee
Q 027772           87 SSPWCLDELAKIVECGNK-RKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWH  165 (219)
Q Consensus        87 ~S~wCl~EL~~i~~~~~~-~~~~~ViPVFy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~Wr~AL~~va~~~G~~  165 (219)
                      +|+||++||++|++| .+ .++++||||||+|+|++||+|+| .||++|.+|++++.  ++++++||.||++||+++||+
T Consensus       103 ~S~WCl~EL~~I~e~-~~~~~~~~ViPIFY~VdPs~Vr~q~g-~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~  178 (204)
T 3ozi_A          103 DSKWCLMELAEIVRR-QEEDPRRIILPIFYMVDPSDVRHQTG-CYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWH  178 (204)
T ss_dssp             GCHHHHHHHHHHHHH-HHHCTTSEECCEEESSCHHHHHHTCT-THHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEE
T ss_pred             cCcHHHHHHHHHHHH-HHhcCCeeeEEEEeecCHHHHHhccc-cHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCcee
Confidence            999999999999999 54 46899999999999999999999 99999999998864  689999999999999999999


Q ss_pred             ecCCch--hHHHHHHHhhhhhh
Q 027772          166 LQDRFF--PLIYLLLFNYLFTL  185 (219)
Q Consensus       166 ~~~~~~--~~~~~~~~~~~~~~  185 (219)
                      +.++..  .++.+|+.++...+
T Consensus       179 ~~~~~~e~~~i~~Iv~di~~kl  200 (204)
T 3ozi_A          179 IGKNDKQGAIADKVSADIWSHI  200 (204)
T ss_dssp             ECTTSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHh
Confidence            998743  34566666665543

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1.8e-55  Score=364.79  Aligned_cols=169  Identities=43%  Similarity=0.660  Sum_probs=139.6

Q ss_pred             CCCCCCeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHH
Q 027772           13 HQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL   92 (219)
Q Consensus        13 s~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl   92 (219)
                      |++.+++|||||||||+|+|++|++||+++|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||+
T Consensus         2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl   81 (176)
T 3jrn_A            2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL   81 (176)
T ss_dssp             -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred             CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence            34467899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccCCCeEEEEEeeeCCcccccccccchHHHHHHHHHHhccChHHHHHHHHHHHHhhcccceeecCCchh
Q 027772           93 DELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFP  172 (219)
Q Consensus        93 ~EL~~i~~~~~~~~~~~ViPVFy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~Wr~AL~~va~~~G~~~~~~~~~  172 (219)
                      +||++|++| .+.++++||||||+|+|++||+|+| .||++|.+|+++  .+.+++++||.||++||+++||++..++..
T Consensus        82 ~EL~~i~~~-~~~~~~~ViPIfy~V~ps~Vr~q~g-~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~~~e~~  157 (176)
T 3jrn_A           82 DELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTG-VLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSGDDDSK  157 (176)
T ss_dssp             HHHHHHHHH-HHTTSCEEEEEECSSCHHHHHHTCT-HHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECCSCHHH
T ss_pred             HHHHHHHhh-hccCCCEEEEEEecCCHHHhhhccC-cHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecCCCHHH
Confidence            999999999 7888999999999999999999999 999999999987  467999999999999999999999766566


Q ss_pred             HHHHHHHhhhhhh
Q 027772          173 LIYLLLFNYLFTL  185 (219)
Q Consensus       173 ~~~~~~~~~~~~~  185 (219)
                      ++.+|+.++...+
T Consensus       158 ~i~~Iv~~v~~~l  170 (176)
T 3jrn_A          158 LVDKIANEISNKK  170 (176)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666666544

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=2.7e-36  Score=243.42  Aligned_cols=137  Identities=20%  Similarity=0.325  Sum_probs=119.4

Q ss_pred             CCCCCeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHHH
Q 027772           14 QILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLD   93 (219)
Q Consensus        14 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~   93 (219)
                      ..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||++
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            46789999999999999 66899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccccCCCeEEEEEeeeCCcccccccccchHHHHHHHHHHhccChHHHHHHHHHHHHh
Q 027772           94 ELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTV  158 (219)
Q Consensus        94 EL~~i~~~~~~~~~~~ViPVFy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~Wr~AL~~v  158 (219)
                      ||..|++| ...++++||||||+|+|++|++|.| .|+++|......     ..+.++-+.|.++
T Consensus        94 El~~~~~~-~~~~~~~iiPV~~~v~p~~v~~~~~-~~~~~~~~~~~~-----~~~~~ia~~l~~l  151 (154)
T 3h16_A           94 ELDGLFQL-ESSGRSRILPIWHKVSKDEVASFSP-TMADKLAFNTST-----KSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHHTCC-CTTSCCCEEEEEESCCTGGGTTTCC-CCCSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred             HHHHHHHH-HhcCCCEEEEEEecCCHHHHhhCCc-cHHHHHhhhcCc-----ccHHHHHHHHHHH
Confidence            99999998 7777889999999999999999999 999888644322     2355555555443

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.95  E-value=2.3e-30  Score=207.99  Aligned_cols=133  Identities=19%  Similarity=0.305  Sum_probs=94.4

Q ss_pred             CCCCCCeeeEEEecccccCccchHHHHHHHHHc--CCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChh
Q 027772           13 HQILQSKYDVFLSFRGEDTRNNFTDNLHTALIR--NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPW   90 (219)
Q Consensus        13 s~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~--~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~w   90 (219)
                      |....+.|||||||+++|+  .||.+|+.+|++  .|+++|+|++++.+|+.+.++|.++|++|+++|+|+|+||++|.|
T Consensus         4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w   81 (146)
T 3ub2_A            4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW   81 (146)
T ss_dssp             CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred             CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence            3556789999999999996  489999999998  599999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccCCCeEEEEEeeeCCccc----cccccc---chHHHHHHHHHHhccChHHHHHHHHHH
Q 027772           91 CLDELAKIVECGNKRKDRKVFAVFYGVDPADV----RKQKGE---DFERVFAKYEEEFKENHEKVLKWRAAL  155 (219)
Q Consensus        91 Cl~EL~~i~~~~~~~~~~~ViPVFy~v~psdV----r~q~g~---~f~~~f~~~~~~~~~~~~~v~~Wr~AL  155 (219)
                      |+.|+..|+.+ ...+..+||||||+|+++++    +.....   ...+.|.++       .+.|.+|+.||
T Consensus        82 c~~El~~al~~-~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~  145 (146)
T 3ub2_A           82 CKYQMLQALTE-APGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHT-SSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred             HHHHHHHHHHH-HhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence            99999999998 43334478899999986554    444321   223444433       37789998875

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.92  E-value=2.9e-26  Score=184.25  Aligned_cols=106  Identities=19%  Similarity=0.295  Sum_probs=94.3

Q ss_pred             CCCeeeEEEecccccCccchHHH-HHHHHHcC--CeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHH
Q 027772           16 LQSKYDVFLSFRGEDTRNNFTDN-LHTALIRN--GFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL   92 (219)
Q Consensus        16 ~~~~yDVFISfrg~D~r~~Fv~~-L~~aL~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl   92 (219)
                      .++.|||||||+++|+  .||.+ |+.+|+++  |+++|+|++++.+|+.+.++|.++|++|+++|+|+|+||++|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            3578999999999996  79986 99999986  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccCCCeEEEEEee-eCCcccc
Q 027772           93 DELAKIVECGNKRKDRKVFAVFYG-VDPADVR  123 (219)
Q Consensus        93 ~EL~~i~~~~~~~~~~~ViPVFy~-v~psdVr  123 (219)
                      .||..|+.+..+.+++.||||||+ +++.++.
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            999999864356677889999996 5554443

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.91  E-value=4.4e-25  Score=179.38  Aligned_cols=102  Identities=20%  Similarity=0.324  Sum_probs=91.7

Q ss_pred             CeeeEEEecccccC---------ccchHHHHHH-HHH-cCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccC
Q 027772           18 SKYDVFLSFRGEDT---------RNNFTDNLHT-ALI-RNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA   86 (219)
Q Consensus        18 ~~yDVFISfrg~D~---------r~~Fv~~L~~-aL~-~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~   86 (219)
                      +.|||||||+++|+         ++.||.+|.. .|+ +.|+++|+|++|+.+|+.+.++|.++|++|+.+|+|+|+||+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            47999999999996         4679999776 699 799999999999999999999999999999999999999997


Q ss_pred             -CChhHHHHHHHHHHhccccCCCeEEEEEeeeCC
Q 027772           87 -SSPWCLDELAKIVECGNKRKDRKVFAVFYGVDP  119 (219)
Q Consensus        87 -~S~wCl~EL~~i~~~~~~~~~~~ViPVFy~v~p  119 (219)
                       .|.||+.|+..++.+....+++.||||+|.-.+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             999999999999998556778899999987444

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.91  E-value=2.2e-25  Score=181.34  Aligned_cols=104  Identities=16%  Similarity=0.246  Sum_probs=93.3

Q ss_pred             CCCCCeeeEEEecccccCccchHHHHHHHHHcC--CeeeEecCCCCcCCccchHHHHHHHH-hcCceEEEEecccCCChh
Q 027772           14 QILQSKYDVFLSFRGEDTRNNFTDNLHTALIRN--GFIAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSKNYASSPW   90 (219)
Q Consensus        14 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI~-~S~~~IvV~S~ny~~S~w   90 (219)
                      ...++.|||||||+++|  ..||.+|+.+|+++  |+++|+|++++.+|+.+.++|.++|+ +|+++|+|+|++|++|.|
T Consensus        11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w   88 (160)
T 2js7_A           11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE   88 (160)
T ss_dssp             SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred             CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence            34467899999999999  47999999999985  69999999999999999999999999 799999999999999999


Q ss_pred             HHHHHHHHHHhccccCCCeEEEEEeeeCC
Q 027772           91 CLDELAKIVECGNKRKDRKVFAVFYGVDP  119 (219)
Q Consensus        91 Cl~EL~~i~~~~~~~~~~~ViPVFy~v~p  119 (219)
                      |+.|+..|+++..+.++++||||||+.-+
T Consensus        89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            99999999988445556799999998543

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.90  E-value=3.6e-25  Score=183.14  Aligned_cols=107  Identities=19%  Similarity=0.312  Sum_probs=89.9

Q ss_pred             CCCCCeeeEEEecccccCccchHH-HHHHHHHc--CCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChh
Q 027772           14 QILQSKYDVFLSFRGEDTRNNFTD-NLHTALIR--NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPW   90 (219)
Q Consensus        14 ~~~~~~yDVFISfrg~D~r~~Fv~-~L~~aL~~--~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~w   90 (219)
                      ...++.|||||||+++|+  .||. +|+.+|++  +|+++|+|++++.+|+.+.++|.++|++|+++|+|+||||++|.|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            456789999999999995  7997 59999998  899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccccCCCeEEEEEee-eCCccc
Q 027772           91 CLDELAKIVECGNKRKDRKVFAVFYG-VDPADV  122 (219)
Q Consensus        91 Cl~EL~~i~~~~~~~~~~~ViPVFy~-v~psdV  122 (219)
                      |+.||..|+++..+.++++||||||+ +.+.++
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~l  140 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYCI  140 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCCCGGGS
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCChHHC
Confidence            99999999976355667899999997 433333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.74  E-value=1.3e-18  Score=170.68  Aligned_cols=104  Identities=19%  Similarity=0.310  Sum_probs=94.1

Q ss_pred             CCCCeeeEEEecccccCccchH-HHHHHHHHc-----CCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCC
Q 027772           15 ILQSKYDVFLSFRGEDTRNNFT-DNLHTALIR-----NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASS   88 (219)
Q Consensus        15 ~~~~~yDVFISfrg~D~r~~Fv-~~L~~aL~~-----~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S   88 (219)
                      ...+.|||||||+++|.  .|| .+|...|+.     .|+++|++++|+.+|+.+.++|.++|++||.+|+|+|++|+.|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            35789999999999995  687 779999985     5899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhccccCCCeEEEEEeeeCCc
Q 027772           89 PWCLDELAKIVECGNKRKDRKVFAVFYGVDPA  120 (219)
Q Consensus        89 ~wCl~EL~~i~~~~~~~~~~~ViPVFy~v~ps  120 (219)
                      .||..|+..++.+..++++++||||||+..|.
T Consensus       744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~  775 (844)
T 3j0a_A          744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ  775 (844)
T ss_dssp             TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence            99999999999875677788999999975443

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=97.92  E-value=6.8e-06  Score=62.69  Aligned_cols=72  Identities=10%  Similarity=0.128  Sum_probs=53.7

Q ss_pred             CeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHHHHHHH
Q 027772           18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAK   97 (219)
Q Consensus        18 ~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~EL~~   97 (219)
                      ..|.|||||..+| .   .+.|...|.+.|+. |.|               +.|+.|++.||+.++...+|+||..|+..
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~-~~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~   62 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLE-WRP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL   62 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSC-EEE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCe-eec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence            4799999999998 2   33444444444553 223               56889999999999999999999999988


Q ss_pred             HHHhccccCCCeEEEEE
Q 027772           98 IVECGNKRKDRKVFAVF  114 (219)
Q Consensus        98 i~~~~~~~~~~~ViPVF  114 (219)
                      +.+.     +..|+-|.
T Consensus        63 A~~~-----gkpIigV~   74 (111)
T 1eiw_A           63 ARKS-----SKPIITVR   74 (111)
T ss_dssp             HTTT-----TCCEEEEC
T ss_pred             HHHc-----CCCEEEEE
Confidence            7544     66777665

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.01  E-value=0.0035  Score=51.63  Aligned_cols=89  Identities=17%  Similarity=0.195  Sum_probs=66.2

Q ss_pred             chHHHHHHHHHcCCeeeEecCCCC----c---C-CccchHHHHHHHHhcCceEEEEecccCCChhHHHHHHHHH-Hhccc
Q 027772           34 NFTDNLHTALIRNGFIAFKDDETL----D---R-GNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIV-ECGNK  104 (219)
Q Consensus        34 ~Fv~~L~~aL~~~Gi~vf~D~~~l----~---~-G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~EL~~i~-~~~~~  104 (219)
                      .+.+.|..--.+..+-.|.|-++.    .   . -..|...|.+.|..|+.+|+++|++...|.|-..|+..++ ++   
T Consensus        32 ~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~---  108 (189)
T 3hyn_A           32 VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGTK---  108 (189)
T ss_dssp             HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTT---
T ss_pred             HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhc---
Confidence            456667666666666677775444    2   2 2357889999999999999999999999999999999997 55   


Q ss_pred             cCCCeEEEEEeeeC-Ccccccccc
Q 027772          105 RKDRKVFAVFYGVD-PADVRKQKG  127 (219)
Q Consensus       105 ~~~~~ViPVFy~v~-psdVr~q~g  127 (219)
                        +.+||-|..+-. .+++..-.|
T Consensus       109 --~~PII~Vy~~~~~~~~i~~~~g  130 (189)
T 3hyn_A          109 --GLPVIVIYPDYDKKSDIVDSNG  130 (189)
T ss_dssp             --CCCEEEEETTCCSGGGTBCTTS
T ss_pred             --CCcEEEEECCccccchhhhccc
Confidence              788888875533 335554344

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=83.89  E-value=6.6  Score=30.79  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             CCeeeEEEec--ccccCccchHHHHHHHHHcCCeeeEecCCC----CcCCc-------cchHHHHHHHHhcCceEEEEec
Q 027772           17 QSKYDVFLSF--RGEDTRNNFTDNLHTALIRNGFIAFKDDET----LDRGN-------EISSELSKAIEESNVSIVILSK   83 (219)
Q Consensus        17 ~~~yDVFISf--rg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~----l~~G~-------~i~~~i~~aI~~S~~~IvV~S~   83 (219)
                      +.+..|||+=  .+..........+.+.|++.| .|+.+..-    -..|.       .+...-.+.|++|++.|+++. 
T Consensus         9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-   86 (165)
T 2khz_A            9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-   86 (165)
T ss_dssp             CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence            3346799973  222111224588999999999 77654311    11221       122333578999999999997 


Q ss_pred             ccCCChhHHHHHHHHHHhccccCCCeEEEE
Q 027772           84 NYASSPWCLDELAKIVECGNKRKDRKVFAV  113 (219)
Q Consensus        84 ny~~S~wCl~EL~~i~~~~~~~~~~~ViPV  113 (219)
                        -.+.-+..|+-.+...     ++.|+-+
T Consensus        87 --~~d~Gt~~EiGyA~al-----gKPVi~l  109 (165)
T 2khz_A           87 --QPSLGVGYELGRAVAL-----GKPILCL  109 (165)
T ss_dssp             --SCCHHHHHHHHHHHHT-----CSSEEEE
T ss_pred             --CCCCCHHHHHHHHHHC-----CCEEEEE
Confidence              4567799999998776     6666644

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=83.19  E-value=6.3  Score=31.11  Aligned_cols=75  Identities=11%  Similarity=0.142  Sum_probs=54.2

Q ss_pred             chHHHHHHHHHcCCeeeEecCCC-CcCCccchHHHHHHHHhcCceEEEEec--ccCCChhHHHHHHHHHHhccccCCCeE
Q 027772           34 NFTDNLHTALIRNGFIAFKDDET-LDRGNEISSELSKAIEESNVSIVILSK--NYASSPWCLDELAKIVECGNKRKDRKV  110 (219)
Q Consensus        34 ~Fv~~L~~aL~~~Gi~vf~D~~~-l~~G~~i~~~i~~aI~~S~~~IvV~S~--ny~~S~wCl~EL~~i~~~~~~~~~~~V  110 (219)
                      .+...+.+.|++.|+.+|.-.++ ......|...-.++|++|++.|++++|  .-..++-...|+-.+...     ++.|
T Consensus        27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al-----gKPV  101 (161)
T 2f62_A           27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL-----NKMV  101 (161)
T ss_dssp             HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT-----TCEE
T ss_pred             HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC-----CCEE
Confidence            68899999999999998874321 112334455557899999999999986  333445588899998776     6666


Q ss_pred             EEE
Q 027772          111 FAV  113 (219)
Q Consensus       111 iPV  113 (219)
                      +-+
T Consensus       102 i~l  104 (161)
T 2f62_A          102 LTF  104 (161)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	8e-22
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	3e-18

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.9 bits (212), Expect = 8e-22
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 6/144 (4%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSI 78
           ++  F+S+ G D+     + L   L + G      +     G  I   +   IE+S  SI
Sbjct: 12  QFHAFISYSGHDSFW-VKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 79  VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERV----- 133
            +LS N+  S WC  EL              +  +     P           + +     
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMARRT 130

Query: 134 FAKYEEEFKENHEKVLKWRAALTT 157
           + ++ +E  +        RAA+  
Sbjct: 131 YLEWPKEKSKRGLFWANLRAAINI 154

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 3e-18
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 8/146 (5%)

Query: 19  KYDVFLSFRGEDTRNNFTDNLHTAL--IRNGFIAFKDDETLDRGNEISSELSKAIEESNV 76
            YD F+S+   D      + +   L      F           G  I   +  +IE+S+ 
Sbjct: 5   CYDAFVSYSERDAYW-VENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 77  SIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERV--- 133
           ++ +LS+N+  S WC  EL           +     +           Q+     ++   
Sbjct: 64  TVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQRFCKLRKIMNT 123

Query: 134 --FAKYEEEFKENHEKVLKWRAALTT 157
             + ++  +  +     +  RAA+ +
Sbjct: 124 KTYLEWPMDEAQREGFWVNLRAAIKS 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.87
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.86
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	91.16
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	82.12

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.9e-23  Score=165.04  Aligned_cols=104  Identities=22%  Similarity=0.362  Sum_probs=94.5

Q ss_pred             CCCCCeeeEEEecccccCccchH-HHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHH
Q 027772           14 QILQSKYDVFLSFRGEDTRNNFT-DNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL   92 (219)
Q Consensus        14 ~~~~~~yDVFISfrg~D~r~~Fv-~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl   92 (219)
                      ...+++|||||||+++|.  .|| ..|...|+++|+++|+|++++.+|+.+.++|.++|++|+.+|+|+|++|+.|.||.
T Consensus         7 ~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~   84 (161)
T d1fyva_           7 LQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCH   84 (161)
T ss_dssp             SSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHH
T ss_pred             cCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHH
Confidence            456789999999999994  577 57999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccCCCeEEEEEeeeCC
Q 027772           93 DELAKIVECGNKRKDRKVFAVFYGVDP  119 (219)
Q Consensus        93 ~EL~~i~~~~~~~~~~~ViPVFy~v~p  119 (219)
                      .|+..+++++.+.+..++|||+++--|
T Consensus        85 ~E~~~a~~~~~~~~~~~lIpV~l~~~~  111 (161)
T d1fyva_          85 YELYFAHHNLFHEGSNSLILILLEPIP  111 (161)
T ss_dssp             HHHHTTSCCCSCSSCSSEEEEESSCCC
T ss_pred             HHHHHHHHHHHHcCCCceeEEEEecCc
Confidence            999999987566777899999997433

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.4e-23  Score=161.32  Aligned_cols=102  Identities=20%  Similarity=0.273  Sum_probs=90.7

Q ss_pred             CCCeeeEEEecccccCccchH-HHHHHHHHc--CCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHH
Q 027772           16 LQSKYDVFLSFRGEDTRNNFT-DNLHTALIR--NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL   92 (219)
Q Consensus        16 ~~~~yDVFISfrg~D~r~~Fv-~~L~~aL~~--~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl   92 (219)
                      .++.|||||||+++|  ..|| .+|...|++  .|+++|+|++++.+|+.+.++|.++|++|+.+|+|+|++|+.|.||.
T Consensus         2 ~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            578999999999999  3566 569999986  49999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccCCCeEEEEEeeeCC
Q 027772           93 DELAKIVECGNKRKDRKVFAVFYGVDP  119 (219)
Q Consensus        93 ~EL~~i~~~~~~~~~~~ViPVFy~v~p  119 (219)
                      .|+..++....+.++..+|||+++..|
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~~~  106 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEPIE  106 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHcCCceEEEEEeccCc
Confidence            999988766456678899999997433

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.16  E-value=0.34  Score=33.03  Aligned_cols=62  Identities=16%  Similarity=0.153  Sum_probs=45.5

Q ss_pred             CeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecc
Q 027772           18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKN   84 (219)
Q Consensus        18 ~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~n   84 (219)
                      ...+|||..-|++.. .++-.|...|++.||++.+|..    +..+...+..|-..---.++|+-++
T Consensus         2 ~~~~V~i~~~g~~~~-~~~~~l~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~~   63 (97)
T d1wu7a1           2 EKKSVYICRVGKINS-SIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGER   63 (97)
T ss_dssp             SSCEEEEEEESSCCH-HHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEEEHH
T ss_pred             CCceEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEECC----CCcHHHHHHHHHhcCCCeEEecCCc
Confidence            357899999888754 6899999999999999999874    4466666666655444455555443

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=82.12  E-value=3.2  Score=30.60  Aligned_cols=72  Identities=11%  Similarity=0.098  Sum_probs=52.9

Q ss_pred             cCccchHHHHHHHHHcCCeeeEecCC-CCcCCccchHHHHHHHHhcCceEEEEecc--cCCChhHHHHHHHHHHh
Q 027772           30 DTRNNFTDNLHTALIRNGFIAFKDDE-TLDRGNEISSELSKAIEESNVSIVILSKN--YASSPWCLDELAKIVEC  101 (219)
Q Consensus        30 D~r~~Fv~~L~~aL~~~Gi~vf~D~~-~l~~G~~i~~~i~~aI~~S~~~IvV~S~n--y~~S~wCl~EL~~i~~~  101 (219)
                      |....+...+...|+..|+.++.-.+ .......|-..-.++|++|++.|.++++-  -..+.=+..|+-.+...
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~al   89 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL   89 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHC
Confidence            34456889999999999999986432 23333456666778899999999999742  23455688999998876