Citrus Sinensis ID: 027793

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKVDRKLIDGVESAFVYVEVGFHTAGSGLNL
Secondary Structure (PSIPRED)
cccccEEEccccccccccHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccHHcccccHHcHHcccEEEccccccHccccccHHcHHHHcEEEccccccccccccccHHHHHEEEcccccccccccHHHHHHcccEEEccccccHcccccccccccEEEccccccHcccccccHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHccEEcccccccccccccccccccccEEEEEccccccccEccc
Coil and Loop (DISEMBL)
MELLQEIDLFLSGIkelpssiehieglkclrlnsctklgflpesLCNLKKLQKLCLSQCRClilsglsslsslkclelsghnfeslptgisQLQRLKCLHLINcnmirslpelpfclnylntsdckrlqslpkisscletpsnqtrgnsylpVMFKFVNCvklhkgternfFANFQRRVHNalpgilhrkvdrKLIDGVESAFVYVEVGFHtagsglnl
Flexible Loop (DISEMBL)
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPkisscletpsnqtrgnsYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNalpgilhrkvdRKLIDGVESAFVYVEVGFHTAGSGLNL
Low Complexity Region (SEG)
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPEslcnlkklqklclsqcrclilsglsslsslkclelsGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKVDRKLIDGVESAFVYVEVGFHTAGSGLNL
Disordered region (IsUnstruct)
*****EIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCL********GNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKVDRKLIDGVESAFVYVEVGFHTA******
Disordered Region (DISOPRED)
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKVDRKLIDGVESAFVYVEVGFHTAGS*L**
Disordered Region (DISEMBL)
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKVDRKLIDGVESAFVYVEVGFHTAGSGLNL
Disordered Region (DISPRO)
*ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKVDRKLIDGVESAFVYVEVGFHTAGSGLNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKVDRKLIDGVESAFVYVEVGFHTAGSGLNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q6DHL5	238	Leucine-rich repeat-conta	yes	no	0.484	0.445	0.385	1e-08
Q40392	1144	TMV resistance protein N	N/A	no	0.538	0.103	0.357	1e-07
P0CB16	1201	Putative disease resistan	no	no	0.639	0.116	0.354	1e-07
Q9FKZ0	815	Probable disease resistan	no	no	0.529	0.142	0.361	2e-07
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.611	0.130	0.325	1e-06
Q5FVI3	239	Leucine-rich repeat-conta	yes	no	0.488	0.447	0.414	2e-06
Q8BGR2	859	Leucine-rich repeat-conta	yes	no	0.652	0.166	0.324	2e-06
Q7SXW3	601	Leucine-rich repeat-conta	no	no	0.520	0.189	0.328	3e-06
Q8N9N7	239	Leucine-rich repeat-conta	yes	no	0.488	0.447	0.405	3e-06
Q9FKZ1	809	Probable disease resistan	no	no	0.461	0.124	0.364	3e-06

>sp|Q6DHL5|LRC57_DANRE Leucine-rich repeat-containing protein 57 OS=Danio rerio GN=lrrc57 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 63/109 (57%), Gaps = 3/109 (2%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ +DL  + I+ELP+ I   + LK   + SC KL  LP  +  LKKL+ L L+  +   
Sbjct: 40  LRTVDLSNNKIEELPAFIGSFQHLKSFTI-SCNKLTSLPNDIGKLKKLETLILNGNQLKQ 98

Query: 64  L-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP 111
           L S +  L SL+ L LSG+ F+  P+G+  L++L  L L + N IR +P
Sbjct: 99  LPSSIGQLKSLRTLSLSGNQFKEFPSGLGTLRQLDVLDL-SKNQIRVVP 146

Danio rerio (taxid: 7955)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 69/137 (50%), Gaps = 19/137 (13%)

Query: 41  LPESLCNLKKLQKLCLSQCRCLILSGL----SSLSSLKCLELSGHNFESLPTGISQLQRL 96
            P     L  L+ L LS C  LI  GL     SLSSLK L+LS +NFE LP+ I+QL  L
Sbjct: 825 FPPVAEGLHSLEYLNLSYCN-LIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGAL 883

Query: 97  KCLHLINCNMIRSLPELPFCLNYLNTSDC-----------KRLQSLPKISSCLETPSNQT 145
           + L L +C  +  LPELP  LN L+  DC            + + L ++   L+   N T
Sbjct: 884 QSLDLKDCQRLTQLPELPPELNELHV-DCHMALKFIHYLVTKRKKLHRVK--LDDAHNDT 940

Query: 146 RGNSYLPVMFKFVNCVK 162
             N +   MF+ ++ ++
Sbjct: 941 MYNLFAYTMFQNISSMR 957

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 71/144 (49%), Gaps = 4/144 (2%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           M  L E++L  + + ELP  I  +  LK L +  C+KL  LP +L  L  L+   +S C 
Sbjct: 748 MSYLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLP-NLEKLTNLEIFDVSGCT 806

Query: 61  CL--ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLN 118
            L  I     +LS L  + LS  N   LP  IS+L  LK L L NC+ +++LP L   L 
Sbjct: 807 ELETIEGSFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKALPNLE-KLT 865

Query: 119 YLNTSDCKRLQSLPKISSCLETPS 142
           +L   D     +L KI    E+ S
Sbjct: 866 HLVIFDVSGCTNLDKIEESFESMS 889

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 69/130 (53%), Gaps = 14/130 (10%)

Query: 4   LQEIDL-FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           LQEID+ +   + ELP  I  +  LK L + +C KL  LPE++ NL +L+   L  C C+
Sbjct: 657 LQEIDIDYCYDLDELPYWIPEVVSLKTLSITNCNKLSQLPEAIGNLSRLE--VLRMCSCM 714

Query: 63  ILSGLSS----LSSLKCLELSGH--NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC 116
            LS L      LS+L+ L++S H      LP  I +LQ+L+ + +  C    S  ELP  
Sbjct: 715 NLSELPEATERLSNLRSLDIS-HCLGLRKLPQEIGKLQKLENISMRKC----SGCELPDS 769

Query: 117 LNYLNTSDCK 126
           + YL   + K
Sbjct: 770 VRYLENLEVK 779

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 62/135 (45%), Gaps = 1/135 (0%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L  + L  + +++LP+SI ++  LK L L    KLG LP S   L  LQ+L L+  R   
Sbjct: 407 LAHVSLSNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPASFGQLSGLQELTLNGNRIHE 466

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTS 123
           L  +   SSL+ L +       LP     L+ L  L L N  + R LP     L+ L T 
Sbjct: 467 LPSMGGASSLQTLTVDDTALAGLPADFGALRNLAHLSLSNTQL-RELPANTGNLHALKTL 525

Query: 124 DCKRLQSLPKISSCL 138
             +  Q L  + S L
Sbjct: 526 SLQGNQQLATLPSSL 540

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q5FVI3|LRC57_RAT Leucine-rich repeat-containing protein 57 OS=Rattus norvegicus GN=Lrrc57 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 4/111 (3%)

Query: 4   LQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           L+ IDL  + I  LP   I     LK L LN+  KL  LP+ LCNLKKL+ L L+     
Sbjct: 40  LRTIDLSNNKIDSLPPLIIGKFTLLKSLSLNN-NKLTVLPDELCNLKKLETLSLNNNHLR 98

Query: 63  IL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE 112
            L S    LS+LK L LSG+   +LP  +  L+ L  + L + N IRS+P+
Sbjct: 99  ELPSSFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVVDL-SKNQIRSIPD 148

Rattus norvegicus (taxid: 10116)

>sp|Q8BGR2|LRC8D_MOUSE Leucine-rich repeat-containing protein 8D OS=Mus musculus GN=Lrrc8d PE=2 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 8/151 (5%)

Query: 4   LQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC 61
           LQE+DL  + I+ +    S +H++ L CL+L    K+  +P S+ ++K L+ L  S  + 
Sbjct: 661 LQELDLKSNNIRTIEEIISFQHLKRLTCLKLWH-NKIVAIPPSITHVKNLESLYFSNNKL 719

Query: 62  LIL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
             L + + SL  L+CL++S +N  ++P  I  LQ L+ LH I  N +  LP+  F    L
Sbjct: 720 ESLPTAVFSLQKLRCLDVSYNNISTIPIEIGLLQNLQHLH-ITGNKVDILPKQLFKCVKL 778

Query: 121 NTSDCKR--LQSLP-KISSCLETPSNQTRGN 148
            T +  +  + SLP KIS   +    + +GN
Sbjct: 779 RTLNLGQNCIASLPEKISQLTQLTQLELKGN 809

Mus musculus (taxid: 10090)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 26/140 (18%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLN----------------------SCTKL 38
           +E LQ++ L  + + ELPS +  +  L+CL L                       S   L
Sbjct: 125 LEQLQKLILSHNKLTELPSGVWRLTNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHL 184

Query: 39  GFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRL 96
             +PESL NL+ L KL LS C  L  +   +S + +L+ L+ S +  ES+P  ++Q++ L
Sbjct: 185 IDIPESLANLQNLVKLDLS-CNKLKSLPPAISQMKNLRMLDCSRNQMESIPPVLAQMESL 243

Query: 97  KCLHLINCNMIRSLPELPFC 116
           + L+L + N +R LPELP C
Sbjct: 244 EQLYLRH-NKLRYLPELPCC 262

Danio rerio (taxid: 7955)

>sp|Q8N9N7|LRC57_HUMAN Leucine-rich repeat-containing protein 57 OS=Homo sapiens GN=LRRC57 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 4/111 (3%)

Query: 4   LQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           L+ IDL  + I+ LP   I     LK L LN+  KL  LP+ +CNLKKL+ L L+     
Sbjct: 40  LRTIDLSNNKIESLPPLLIGKFTLLKSLSLNN-NKLTVLPDEICNLKKLETLSLNNNHLR 98

Query: 63  IL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE 112
            L S    LS+LK L LSG+   +LP  +  L+ L  + L + N IRS+P+
Sbjct: 99  ELPSTFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVMDL-SKNQIRSIPD 148

Homo sapiens (taxid: 9606)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 6/107 (5%)

Query: 4   LQEIDL-FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQ--KLCLSQCR 60
           LQEID+ +   + ELP  I  I  LK L + +C KL  LPE++ NL +L+  +LC S   
Sbjct: 651 LQEIDIDYCYDLDELPYWISEIVSLKTLSITNCNKLSQLPEAIGNLSRLEVLRLCSSMNL 710

Query: 61  CLILSGLSSLSSLKCLELSGH--NFESLPTGISQLQRLKCLHLINCN 105
             +      LS+L+ L++S H      LP  I +LQ LK + +  C+
Sbjct: 711 SELPEATEGLSNLRFLDIS-HCLGLRKLPQEIGKLQNLKKISMRKCS 756

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
255563202	1158	leucine-rich repeat containing protein,	0.894	0.169	0.339	9e-21
255537139	1137	leucine-rich repeat-containing protein,	0.776	0.149	0.325	2e-16
147841678	1567	hypothetical protein VITISV_003258 [Viti	0.716	0.100	0.355	7e-16
451799084	1514	TMV resistance protein N-like protein 1	0.735	0.106	0.342	1e-15
359477827	1408	PREDICTED: TMV resistance protein N-like	0.735	0.114	0.342	1e-15
297741888	1186	unnamed protein product [Vitis vinifera]	0.735	0.135	0.342	1e-15
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.639	0.111	0.388	1e-14
359493220	1481	PREDICTED: TMV resistance protein N-like	0.557	0.082	0.425	2e-14
147771313	1384	hypothetical protein VITISV_034210 [Viti	0.557	0.088	0.425	2e-14
147782877	1383	hypothetical protein VITISV_009855 [Viti	0.694	0.109	0.348	3e-14

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  106 bits (264), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 7/203 (3%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           LQ + L  + +  LP +  +++ L  L  + C+KLG LP+++ NLK L +L    C    
Sbjct: 794 LQHLSLDETAMVNLPDTFCNLKALNMLNFSDCSKLGKLPKNMKNLKSLAELRAGGCNLST 853

Query: 64  L-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
           L + L  LSS+  L LSG NF+++P GI+QL +L+ +++  C  ++SLPELP  + YLN 
Sbjct: 854 LPADLKYLSSIVELNLSGSNFDTMPAGINQLSKLRWINVTGCKRLQSLPELPPRIRYLNA 913

Query: 123 SDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNA 182
            DC+ L S+  +    E   +    NS     F F NC KL +    +  A+ Q ++ + 
Sbjct: 914 RDCRSLVSISGLKQLFELGCS----NSLDDETFVFTNCFKLDQDNWADILASAQLKIQHF 969

Query: 183 LPGILHRKVDRKLIDGVESAFVY 205
             G  H   DR+L D     F Y
Sbjct: 970 AMGRKH--YDRELYDETFICFTY 990

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 36/206 (17%)

Query: 2   ELLQEID----LFLSG--IKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLC 55
           E+L+ +D    L L+G  IKELPSSIE ++GL  + L +C  L  LPES CNLK L  L 
Sbjct: 715 EILESMDRLKVLVLNGTAIKELPSSIERLKGLSSIYLENCRNLAHLPESFCNLKALYWLF 774

Query: 56  LSQCRCL-----ILSGLSSLSSLKC--------------------LELSGHNFESLPTGI 90
           L+ C  L      LS L++L  L                      L+LSG+ F+ LP+  
Sbjct: 775 LTFCPKLEKLPEKLSNLTTLEDLSVGVCNLLKLPSHMNHLSCISKLDLSGNYFDQLPS-F 833

Query: 91  SQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSY 150
             L  L+CL + +C  +RSLPE+P  L  ++  DC+ L+++  +    +     T    +
Sbjct: 834 KYLLNLRCLDISSCRRLRSLPEVPHSLTDIDAHDCRSLETISGLKQIFQLKYTHT----F 889

Query: 151 LPVMFKFVNCVKLHKGTERNFFANFQ 176
                 F +C K+ +    +F A+ Q
Sbjct: 890 YDKKIIFTSCFKMDESAWSDFLADAQ 915

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841678|emb|CAN73064.1| hypothetical protein VITISV_003258 [Vitis vinifera]

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 20/177 (11%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           M  L+ +DL  + I +LPSSI H+ GL+ L L  C+KL  +P  +C+L  L+ L L  C 
Sbjct: 687 MRKLRVLDLSGTAIMDLPSSITHLNGLQTLLLEECSKLHKIPSYICHLSSLKVLNLGHCN 746

Query: 61  CL---ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
            +   I S +  LSSL+ L L G +F S+P  I+QL RLK L+L +CN +  +PELP  L
Sbjct: 747 MMEGGIPSDICYLSSLQKLNLEGGHFSSIPPTINQLSRLKALNLSHCNNLEQIPELPSRL 806

Query: 118 NYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFAN 174
             L+     R  S          P        Y P +   VNC    + ++R  F++
Sbjct: 807 RLLDAHGSNRTSS--------RAP--------YFP-LHSLVNCFSWAQDSKRTSFSD 846

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451799084|gb|AGF69238.1| TMV resistance protein N-like protein 1 [Vitis labrusca]

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 20/181 (11%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           M  L+ +DL  + I +LPSSI H+ GL+ L L  C KL  +P  +C+L  L++L L  C 
Sbjct: 695 MRELRVLDLSGTAIMDLPSSITHLNGLQTLLLQECLKLHQIPNHICHLSSLKELDLGHCN 754

Query: 61  CL---ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
            +   I S +  LSSL+ L L   +F S+PT I+QL RL+ L+L +CN +  +PELP  L
Sbjct: 755 IMEGGIPSDICHLSSLQKLNLEQGHFSSIPTTINQLSRLEVLNLSHCNNLEQIPELPSRL 814

Query: 118 NYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQR 177
             L+                    SN+T   +    +   VNC    +G +R  F++   
Sbjct: 815 RLLDAHG-----------------SNRTSSRALFLPLHSLVNCFSWAQGLKRTSFSDSSY 857

Query: 178 R 178
           R
Sbjct: 858 R 858

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477827|ref|XP_002282884.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 20/181 (11%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           M  L+ +DL  + I +LPSSI H+ GL+ L L  C KL  +P  +C+L  L++L L  C 
Sbjct: 707 MRELRVLDLSGTAIMDLPSSITHLNGLQTLLLQECLKLHQIPNHICHLSSLKELDLGHCN 766

Query: 61  CL---ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
            +   I S +  LSSL+ L L   +F S+PT I+QL RL+ L+L +CN +  +PELP  L
Sbjct: 767 IMEGGIPSDICHLSSLQKLNLEQGHFSSIPTTINQLSRLEVLNLSHCNNLEQIPELPSRL 826

Query: 118 NYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQR 177
             L+                    SN+T   +    +   VNC    +G +R  F++   
Sbjct: 827 RLLDAH-----------------GSNRTSSRALFLPLHSLVNCFSWAQGLKRTSFSDSSY 869

Query: 178 R 178
           R
Sbjct: 870 R 870

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741888|emb|CBI33323.3| unnamed protein product [Vitis vinifera]

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 20/181 (11%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           M  L+ +DL  + I +LPSSI H+ GL+ L L  C KL  +P  +C+L  L++L L  C 
Sbjct: 524 MRELRVLDLSGTAIMDLPSSITHLNGLQTLLLQECLKLHQIPNHICHLSSLKELDLGHCN 583

Query: 61  CL---ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
            +   I S +  LSSL+ L L   +F S+PT I+QL RL+ L+L +CN +  +PELP  L
Sbjct: 584 IMEGGIPSDICHLSSLQKLNLEQGHFSSIPTTINQLSRLEVLNLSHCNNLEQIPELPSRL 643

Query: 118 NYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQR 177
             L+                    SN+T   +    +   VNC    +G +R  F++   
Sbjct: 644 RLLDAHG-----------------SNRTSSRALFLPLHSLVNCFSWAQGLKRTSFSDSSY 686

Query: 178 R 178
           R
Sbjct: 687 R 687

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 92/162 (56%), Gaps = 22/162 (13%)

Query: 12   SGIKELPSSIEHIEGLKCLRLNSCTKLG--------FLPESLCNLKKLQKLCLSQCRCL- 62
            +GI +LPS + +++GL CL + +C  L          LPE   +LK L+KL L  C C+ 
Sbjct: 874  TGITKLPSPVGNLKGLACLEVGNCKYLKGIECLVDLHLPERDMDLKYLRKLNLDGC-CIS 932

Query: 63   -ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLN 121
             +   L  LSSL+ L+LSG+NFE++P  I +L  L+ L L +C  ++S+P LP  L+ L+
Sbjct: 933  KVPDSLGCLSSLEVLDLSGNNFETMPMNIYKLVELQYLGLRSCRKLKSIPRLPRRLSKLD 992

Query: 122  TSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKL 163
              DC   QSL K+SS     S    GN +    F F NC++L
Sbjct: 993  AHDC---QSLIKVSS-----SYVVEGNIF---EFIFTNCLRL 1023

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493220|ref|XP_002264441.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 5/127 (3%)

Query: 1   MELLQEIDLFLSGIKELPSS--IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQ 58
           M  L+E+DL  + I+ELPSS   EH++ LK L  N C+KL  +P  +C L  L+ L LS 
Sbjct: 713 MRKLRELDLSGTAIEELPSSSSFEHLKALKILSFNRCSKLNKIPIDVCCLSSLEVLDLSY 772

Query: 59  CRCL---ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPF 115
           C  +   I S +  LSSLK L L  ++F S+P  I+QL RL+ L+L +C  +  +PELP 
Sbjct: 773 CNIMEGGIPSDICRLSSLKELNLKSNDFRSIPATINQLSRLQVLNLSHCQNLEHVPELPS 832

Query: 116 CLNYLNT 122
            L  L+ 
Sbjct: 833 SLRLLDA 839

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147771313|emb|CAN73963.1| hypothetical protein VITISV_034210 [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 5/127 (3%)

Query: 1   MELLQEIDLFLSGIKELPSS--IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQ 58
           M  L+E+DL  + I+ELPSS   EH++ LK L  N C+KL  +P  +C L  L+ L LS 
Sbjct: 579 MRKLRELDLSGTAIEELPSSSSFEHLKALKILSFNRCSKLNKIPIDVCCLSSLEVLDLSY 638

Query: 59  CRCL---ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPF 115
           C  +   I S +  LSSLK L L  ++F S+P  I+QL RL+ L+L +C  +  +PELP 
Sbjct: 639 CNIMEGGIPSDICRLSSLKELNLKSNDFRSIPATINQLSRLQVLNLSHCQNLEHVPELPS 698

Query: 116 CLNYLNT 122
            L  L+ 
Sbjct: 699 SLRLLDA 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782877|emb|CAN67859.1| hypothetical protein VITISV_009855 [Vitis vinifera]

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/172 (34%), Positives = 88/172 (51%), Gaps = 20/172 (11%)

Query: 6   EIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--- 62
           EI      I++LPSSI H+ GL+ L L  C KL  +P  +C+L  L++L L  C  +   
Sbjct: 582 EILTLEGSIRDLPSSITHLNGLQTLLLQECLKLHQIPNHICHLSSLKELDLGHCNIMEGG 641

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
           I S +  LSSL+ L L   +F S+PT I+QL RL+ L+L +CN +  +PELP  L  L+ 
Sbjct: 642 IPSDICHLSSLQKLNLERGHFSSIPTTINQLSRLEVLNLSHCNNLEQIPELPSRLRLLDA 701

Query: 123 SDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFAN 174
               R  S          P        +LP +   VNC    + ++R  F++
Sbjct: 702 HGSNRTSS--------RAP--------FLP-LHSLVNCFSWAQDSKRTSFSD 736

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2129670	1008	AT4G14370 [Arabidopsis thalian	0.410	0.089	0.333	3e-12
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.374	0.067	0.393	1.3e-09
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.415	0.073	0.295	9.7e-09
TAIR|locus:2152252	986	AT5G38850 [Arabidopsis thalian	0.406	0.090	0.333	4.4e-07
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.315	0.050	0.366	7.4e-07
TAIR|locus:2174920	1017	AT5G40100 [Arabidopsis thalian	0.283	0.060	0.460	7.6e-07
TAIR|locus:2100182	1007	AT3G44400 [Arabidopsis thalian	0.351	0.076	0.329	1.3e-06
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.429	0.072	0.333	1.8e-06
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.347	0.064	0.358	2.1e-06
TAIR|locus:2024588	997	RLM1 "RESISTANCE TO LEPTOSPHAE	0.374	0.082	0.343	2.4e-06

TAIR|locus:2129670 AT4G14370 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
 Identities = 34/102 (33%), Positives = 51/102 (50%)

Query:    84 ESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSN 143
             E +P  I  L  L  LH+  C  ++SLP+LP  + +LN  DC+ L+S+  +SS       
Sbjct:   730 EKIPDWIKDLHELSFLHIGGCRNLKSLPQLPLSIRWLNACDCESLESVACVSSL------ 783

Query:   144 QTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPG 185
                 NS++ +   F NC KL++ T R+       R    LPG
Sbjct:   784 ----NSFVDL--NFTNCFKLNQETRRDLIQQSFFRSLRILPG 819

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=ISS

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
 Identities = 35/89 (39%), Positives = 51/89 (57%)

Query:    80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLE 139
             G+N E+LP   +QL  LK   L  C M++SLP LP  L YL+  +C+ L++L   ++ L 
Sbjct:   887 GNNIENLPESFNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETL---ANPL- 942

Query:   140 TPSNQTRGNSYLPVMFKFVNCVKLHKGTE 168
             TP   T G   +  MF F NC KL++  +
Sbjct:   943 TPL--TVGER-IHSMFIFSNCYKLNQDAQ 968

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
 Identities = 31/105 (29%), Positives = 51/105 (48%)

Query:    82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETP 141
             + + +P  + ++ RL+ L L NCN + SLP+LP  L+Y+   +CK   SL ++  C   P
Sbjct:   980 DIQEVPPWVKRMSRLRALRLNNCNSLVSLPQLPDSLDYIYADNCK---SLERLDCCFNNP 1036

Query:   142 SNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGI 186
               +     Y P       C KL++   R+   +   R +  LP I
Sbjct:  1037 EIRL----YFP------KCFKLNQEA-RDLIMHTSTRKYAMLPSI 1070

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2152252 AT5G38850 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
 Identities = 34/102 (33%), Positives = 49/102 (48%)

Query:    84 ESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSN 143
             E +P  I  +  L+ L L  C  + SLPELP  L YL+ ++C+ L+S+    SC   P N
Sbjct:   762 EKIPDDIKNVHGLQILFLGGCRKLASLPELPGSLLYLSANECESLESV----SC---PFN 814

Query:   144 QTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPG 185
                  SY+ +   F NC KL++   R            +LPG
Sbjct:   815 ----TSYMEL--SFTNCFKLNQEARRGIIQQSFSHGWASLPG 850

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
 Identities = 26/71 (36%), Positives = 39/71 (54%)

Query:    80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLE 139
             G+NF  LP  I Q + L+ L L +C  + SLPELP  L +LN   C  L+++ +  S  +
Sbjct:   837 GNNFGKLPESIKQFRNLESLILCHCKNLESLPELPQSLEFLNAHGCVCLKNIHR--SFQQ 894

Query:   140 TPSNQTRGNSY 150
              P + T  N +
Sbjct:   895 FPRHCTFSNCF 905

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2174920 AT5G40100 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 29/63 (46%), Positives = 42/63 (66%)

Query:    80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLE 139
             G++FE+LP  +++L RLK L L NC+ ++ LPEL   +  L  S+CK L+SL KIS   +
Sbjct:   820 GNDFENLPEDMNRLSRLKTLCLRNCSKLKELPELTQ-VQSLTLSNCKNLRSLVKISDASQ 878

Query:   140 TPS 142
              PS
Sbjct:   879 DPS 881

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2100182 AT3G44400 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 29/88 (32%), Positives = 42/88 (47%)

Query:    86 LPTG-ISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQ 144
             LP   + ++ RL+ L L NCN + SLP+LP  L+Y+   +CK   SL ++  C   P   
Sbjct:   802 LPLSWVKRMSRLRVLTLNNCNNLVSLPQLPDSLDYIYADNCK---SLERLDCCFNNPEIS 858

Query:   145 TRGNSYLPVMFKFVNCVK---LHKGTER 169
                  Y P  FK     +   +H  T R
Sbjct:   859 L----YFPNCFKLNQEARDLIMHTSTSR 882

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
 Identities = 37/111 (33%), Positives = 49/111 (44%)

Query:    80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLP-ELPFCLNYLNTSDCKRLQSLPKISSCL 138
             G+NFE +P  I +L RL  L+L NC  +++LP ELP  L Y+    C    SL  IS C 
Sbjct:   987 GNNFEFIPASIKRLTRLNRLNLNNCQRLQALPDELPRGLLYIYIHSCT---SLVSISGCF 1043

Query:   139 ETPSNQTRGNSYLPVMFKFVNCVKLHKGTE----RNFFANFQRRVHNALPG 185
                      N Y        NC KL +  +    RN      +  H+  PG
Sbjct:  1044 ---------NQYCLRKLVASNCYKLDQAAQILIHRNLKLESAKPEHSYFPG 1085

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 29/81 (35%), Positives = 41/81 (50%)

Query:    85 SLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL--PKISSCLETPS 142
             +L   +     LKCL + NC  +R LP LP CL YLN   C+RL+S+  P ++  L    
Sbjct:   896 NLQDNLKDFSNLKCLVMKNCENLRYLPSLPKCLEYLNVYGCERLESVENPLVADRLTLFL 955

Query:   143 NQTRGNSYLPVMFKFVNCVKL 163
             +++     L   F F NC  L
Sbjct:   956 DRSEE---LRSTFLFTNCHNL 973

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2024588 RLM1 "RESISTANCE TO LEPTOSPHAERIA MACULANS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
 Identities = 33/96 (34%), Positives = 44/96 (45%)

Query:    90 ISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNS 149
             I  LQRL  L L  C  ++SLPELP  L  L   DC   +SL +++  L TP+ Q     
Sbjct:   779 IKDLQRLDHLRLCRCRKLKSLPELPASLRLLTAEDC---ESLERVTYPLNTPTGQ----- 830

Query:   150 YLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPG 185
                    F NC+KL +  +R        + H   PG
Sbjct:   831 -----LNFTNCLKLGEEAQRVIIQQSLVK-HACFPG 860

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-09
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 54/168 (32%), Positives = 75/168 (44%), Gaps = 20/168 (11%)

Query: 9   LFLSGIK---ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--- 62
           LFLS I    ELPSSI+++  L+ L + +C  L  LP  + NL+ L+ L LS C  L   
Sbjct: 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841

Query: 63  --ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
             I + +S L+      LS    E +P  I +   L  L +  CN ++ +      L +L
Sbjct: 842 PDISTNISDLN------LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895

Query: 121 NT---SDCKRLQSLPKISSCLETPSNQTRGNSYLP--VMFKFVNCVKL 163
            T   SDC  L       S  E        +S LP  V   F+NC  L
Sbjct: 896 ETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNL 943

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 24/118 (20%)

Query: 4   LQEIDLFLS-GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           L+ IDL  S  +KE+P  +     L+ L+L+ C+ L  LP S+  L KL+ L +S+C   
Sbjct: 636 LRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC--- 691

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
                              N E LPTGI+ L+ L  L+L  C+ ++S P++   +++L
Sbjct: 692 ------------------ENLEILPTGIN-LKSLYRLNLSGCSRLKSFPDISTNISWL 730

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 41/135 (30%), Positives = 56/135 (41%), Gaps = 2/135 (1%)

Query: 3   LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
            L  +DL  + I ++P  I  ++        S  K+  LP  L NL  L+ L LS     
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176

Query: 63  ILSGLSS-LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLN 121
            L  L S LS+L  L+LSG+    LP  I  L  L+ L L N N I  L      L  L+
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLS 235

Query: 122 TSDCKRLQSLPKISS 136
             +    +      S
Sbjct: 236 GLELSNNKLEDLPES 250

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)

Query: 39  GFLPESLCNLKKLQKLCLSQ--CRCLILSGLSSLSSLKCLELSGHNFE-SLPTGISQLQR 95
           GF+P  +  L+ LQ + LS    R  I   L S++SL+ L+LS ++F  S+P  + QL  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 96  LKCLHL 101
           L+ L+L
Sbjct: 492 LRILNL 497

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 42/109 (38%), Positives = 53/109 (48%), Gaps = 13/109 (11%)

Query: 11  LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG---- 66
           LSG  E+P  I  +  L  L L      G +P SL NLK LQ L L Q +   LSG    
Sbjct: 224 LSG--EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK---LSGPIPP 278

Query: 67  -LSSLSSLKCLELSGHNFES--LPTGISQLQRLKCLHLINCNMIRSLPE 112
            + SL  L  L+LS  N  S  +P  + QLQ L+ LHL + N    +P 
Sbjct: 279 SIFSLQKLISLDLS-DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV 326

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.66
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.65
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.58
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.46
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.46
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.42
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.3
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.29
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.29
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.26
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.17
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.16
PLN03150	623	hypothetical protein; Provisional	99.14
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.14
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.07
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.07
PLN03150	623	hypothetical protein; Provisional	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.01
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.92
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.77
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
PRK15386	426	type III secretion protein GogB; Provisional	98.7
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.7
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.62
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.48
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.44
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.42
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.39
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.19
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.14
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.0
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.98
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.96
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.87
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.54
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.52
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.91
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.85
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.74
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.72
KOG4341	483	consensus F-box protein containing LRR [General fu	96.56
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.38
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.17
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.12
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.93
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.18
KOG4341	483	consensus F-box protein containing LRR [General fu	95.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.63
smart00370	26	LRR Leucine-rich repeats, outliers.	94.63
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.56
smart00370	26	LRR Leucine-rich repeats, outliers.	94.5
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.5
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.94
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.09
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.75
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.38
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	89.22
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	89.08
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.92
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	80.27

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.66  E-value=2.6e-16  Score=145.93  Aligned_cols=133  Identities=29%  Similarity=0.377  Sum_probs=74.2

Q ss_pred             CCccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.+.. +|..++.+++|++|++++|.+.+.+|..++++++|++|++++|.+.  +|..++.+++|++|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            345555555555543 4555566666666666666555556656666666666666666543  4555555666666666


Q ss_pred             cCCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCcc
Q 027793           79 SGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI  134 (219)
Q Consensus        79 ~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~  134 (219)
                      ++|.++ .+|..++++++|++|++++|+..+.+|..   +++|+.|++++|.....+|..
T Consensus       220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  279 (968)
T PLN00113        220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS  279 (968)
T ss_pred             cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh
Confidence            666654 55555566666666666655544444432   245555555555443444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.65  E-value=5e-16  Score=144.09  Aligned_cols=137  Identities=24%  Similarity=0.332  Sum_probs=113.8

Q ss_pred             CCCccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.+.. +|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.  +|..++.+++|++|+
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  242 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD  242 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence            4689999999998875 8888899999999999999888888989999999999999998875  778888899999999


Q ss_pred             ecCCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccC
Q 027793           78 LSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSC  137 (219)
Q Consensus        78 l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~  137 (219)
                      +++|.++ .+|..++++++|+.|++++|...+.+|..   +.+|+.|++++|.....+|..+..
T Consensus       243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  306 (968)
T PLN00113        243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ  306 (968)
T ss_pred             CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence            9999876 77888888999999999888776677754   367888888887665666665543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=1.2e-17  Score=121.19  Aligned_cols=134  Identities=28%  Similarity=0.403  Sum_probs=84.0

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~L~l   78 (219)
                      .+|++|++++|+|+++|.+++.+++|+.|++.-| ....+|.+|+.++.|++||+..|...   +|..|..++.|+.|.+
T Consensus        56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen   56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL  134 (264)
T ss_pred             hhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence            4555666666666666666666666666666554 34455666666666666666665543   5555666666666666


Q ss_pred             cCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCccccCC
Q 027793           79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPKISSCL  138 (219)
Q Consensus        79 ~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~~~~~~  138 (219)
                      +.|.++.+|..++++++|+.|.++.|. +-++|..+   ..|++|++.+ +.++.+|..+..+
T Consensus       135 ~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqg-nrl~vlppel~~l  195 (264)
T KOG0617|consen  135 GDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQG-NRLTVLPPELANL  195 (264)
T ss_pred             cCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhccc-ceeeecChhhhhh
Confidence            666666667777777777777777743 44566543   5677777777 4567777665544

>PLN03210 Resistant to P

Probab=99.58  E-value=5.3e-15  Score=138.89  Aligned_cols=120  Identities=28%  Similarity=0.507  Sum_probs=69.5

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~   80 (219)
                      +|++|++.++.+..++..+..+++|+.|++++|...+.+| .++.+++|++|++++|...  +|..++.+++|+.|++++
T Consensus       612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~  690 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSR  690 (1153)
T ss_pred             CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCC
Confidence            4555666666555555555566666666666655555555 3555666666666665533  555566666666666666


Q ss_pred             Cc-CCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccC
Q 027793           81 HN-FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD  124 (219)
Q Consensus        81 n~-l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~  124 (219)
                      |. ++.+|..+ ++++|+.|++++|..++.+|....+|+.|++++
T Consensus       691 c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~  734 (1153)
T PLN03210        691 CENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE  734 (1153)
T ss_pred             CCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence            54 55555443 456666666666655555555444555555544

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.46  E-value=3.3e-13  Score=126.95  Aligned_cols=152  Identities=28%  Similarity=0.446  Sum_probs=85.6

Q ss_pred             CCCccEEEeecC-CCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCC-----
Q 027793            1 MELLQEIDLFLS-GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSS-----   72 (219)
Q Consensus         1 l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~-----   72 (219)
                      +++|+.|+++++ .++.+|. ++.+++|++|++++|.....+|..++.+++|+.|++++|...  +|..+ .+++     
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~  710 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN  710 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence            356677777654 3455554 566666777777666666666666666666666666665432  33322 3334     


Q ss_pred             ----------------CCEEEecCCcCCccchhh------------------------------hCCCCCCEEeccCCCC
Q 027793           73 ----------------LKCLELSGHNFESLPTGI------------------------------SQLQRLKCLHLINCNM  106 (219)
Q Consensus        73 ----------------L~~L~l~~n~l~~lp~~l------------------------------~~l~~L~~L~l~~~~~  106 (219)
                                      |++|++++|.++.+|..+                              ...++|+.|++++|..
T Consensus       711 Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~  790 (1153)
T PLN03210        711 LSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS  790 (1153)
T ss_pred             CCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC
Confidence                            444444444444444321                              0113455666666655


Q ss_pred             CCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcCCcccccc
Q 027793          107 IRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKG  166 (219)
Q Consensus       107 l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~  166 (219)
                      +..+|..   +++|+.|++++|..++.+|......            .++.+++++|..+...
T Consensus       791 l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~------------sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        791 LVELPSSIQNLHKLEHLEIENCINLETLPTGINLE------------SLESLDLSGCSRLRTF  841 (1153)
T ss_pred             ccccChhhhCCCCCCEEECCCCCCcCeeCCCCCcc------------ccCEEECCCCCccccc
Confidence            6666643   3566777777776666666544211            4456777777666544

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.46  E-value=1.6e-15  Score=110.25  Aligned_cols=134  Identities=28%  Similarity=0.365  Sum_probs=115.5

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~   80 (219)
                      .+++.|.++.|+++.+|+.+..+.+|+.|++.+| .+..+|..++++++|+.|++.-|+.. +|.+|+.++.|+.||+++
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence            5677888999999999999999999999999987 66788999999999999999988876 899999999999999999


Q ss_pred             CcCC--ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCC
Q 027793           81 HNFE--SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCL  138 (219)
Q Consensus        81 n~l~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~  138 (219)
                      |.+.  .+|..|..+..|+.|+++.| ..+.+|..   +++|+.|.+.+| .+-++|..++.+
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~l  172 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDL  172 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccC-chhhCcHHHHHH
Confidence            9986  88999988999999999985 55777765   467778888885 566788877765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.42  E-value=1e-14  Score=124.34  Aligned_cols=133  Identities=29%  Similarity=0.347  Sum_probs=89.4

Q ss_pred             CccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-------------------
Q 027793            3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-------------------   62 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-------------------   62 (219)
                      ++-+|++++|+|..+|.. +-+++-|-.||+++| ....+|+.+..+..|++|++++|...                   
T Consensus       127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms  205 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS  205 (1255)
T ss_pred             CcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence            344556666666666655 445566666666665 34556666667777777777777654                   


Q ss_pred             --------ccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcC
Q 027793           63 --------ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSL  131 (219)
Q Consensus        63 --------~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~l  131 (219)
                              +|.++..+.+|..+|++.|.+..+|+++-++++|+.|++|+|. ++.+...   -.+|++|+++. ++++.+
T Consensus       206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSr-NQLt~L  283 (1255)
T KOG0444|consen  206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSR-NQLTVL  283 (1255)
T ss_pred             cccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhcccc-chhccc
Confidence                    6777777888888888888888888888888888888888854 4444322   14666777766 456666


Q ss_pred             CccccCC
Q 027793          132 PKISSCL  138 (219)
Q Consensus       132 p~~~~~~  138 (219)
                      |..+..+
T Consensus       284 P~avcKL  290 (1255)
T KOG0444|consen  284 PDAVCKL  290 (1255)
T ss_pred             hHHHhhh
Confidence            6555444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.30  E-value=1.6e-12  Score=110.26  Aligned_cols=101  Identities=23%  Similarity=0.330  Sum_probs=61.9

Q ss_pred             CccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc--ccCCCCCCCCEEEec
Q 027793            3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL--SGLSSLSSLKCLELS   79 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p--~~~~~l~~L~~L~l~   79 (219)
                      ++++|++++|+|+.+... |..+.+|.+|.++.|++...-+..|+++++|+.|++..|.+.+-  ..|.++++|+.|.+.
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            577777777777776543 77777777778877765554445666788888888888876622  234455555555555


Q ss_pred             CCcCCccch-hhhCCCCCCEEeccC
Q 027793           80 GHNFESLPT-GISQLQRLKCLHLIN  103 (219)
Q Consensus        80 ~n~l~~lp~-~l~~l~~L~~L~l~~  103 (219)
                      .|.+..+.+ .|..+.++++|+++.
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~  278 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLET  278 (873)
T ss_pred             hcCcccccCcceeeecccceeeccc
Confidence            555544433 233444555555554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.29  E-value=7.1e-14  Score=119.34  Aligned_cols=133  Identities=21%  Similarity=0.331  Sum_probs=85.5

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCEEEec
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~L~l~   79 (219)
                      .++.|.+...++..+|..++.+.+|++|.+++|+..+. -..+..++.|+.+++..|+..   +|..+..+..|..||++
T Consensus        33 ~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS  111 (1255)
T KOG0444|consen   33 QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS  111 (1255)
T ss_pred             heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence            34444444444444555555555555555555433222 223444455555555555443   78888888889999999


Q ss_pred             CCcCCccchhhhCCCCCCEEeccCCCCCCcCCCCC----CCCCeEeccCCcCCCcCCccccCC
Q 027793           80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPELP----FCLNYLNTSDCKRLQSLPKISSCL  138 (219)
Q Consensus        80 ~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~----~~L~~L~l~~~~~l~~lp~~~~~~  138 (219)
                      +|++++.|..+...+++-.|++|+ +.+..||..+    .-|-.||+++ +.++.+|..+.++
T Consensus       112 hNqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL  172 (1255)
T KOG0444|consen  112 HNQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRL  172 (1255)
T ss_pred             hhhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHH
Confidence            999998898888888888899888 4567788642    4566778877 5688888766654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.29  E-value=2.2e-14  Score=116.47  Aligned_cols=161  Identities=27%  Similarity=0.343  Sum_probs=121.4

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~   80 (219)
                      ..+.+|++.+|++.++|+.++.+..++.++.++| ....+|+.++.+.++..++.+.|... +|+.++.+..++.++..+
T Consensus        68 ~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~  146 (565)
T KOG0472|consen   68 ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN  146 (565)
T ss_pred             cceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc
Confidence            4578889999999999999999999999999987 55678888889999999999988876 888888888999999999


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCCC-C--CCCCCeEeccCCcCCCcCCccccCCC-CCccccCCCCCCCeEEE
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE-L--PFCLNYLNTSDCKRLQSLPKISSCLE-TPSNQTRGNSYLPVMFK  156 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~--~~~L~~L~l~~~~~l~~lp~~~~~~~-~~~~~~~~~~~~l~~l~  156 (219)
                      |+++++|.++..+.+|..+++.+|+ ++.+|+ .  +..|+++|.-. +.++.+|..++.+. .-...+..|.+.... .
T Consensus       147 N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-e  223 (565)
T KOG0472|consen  147 NQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLP-E  223 (565)
T ss_pred             cccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCC-C
Confidence            9999999998888888889888865 444543 2  36788888766 56888888777652 111111223232233 5


Q ss_pred             EcCCcccccc
Q 027793          157 FVNCVKLHKG  166 (219)
Q Consensus       157 ~~~c~~l~~~  166 (219)
                      |.+|..|.+.
T Consensus       224 f~gcs~L~El  233 (565)
T KOG0472|consen  224 FPGCSLLKEL  233 (565)
T ss_pred             CCccHHHHHH
Confidence            6677666664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.27  E-value=2.6e-14  Score=116.00  Aligned_cols=144  Identities=29%  Similarity=0.341  Sum_probs=116.1

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCc
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN   82 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~   82 (219)
                      ++..+++.+|+++.+|+..-.++.|++||...| ..+.+|+.++.+.+|+.|++..|.+..-+.|.++..|+.++++.|.
T Consensus       161 ~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~  239 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ  239 (565)
T ss_pred             HHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH
Confidence            345667778888887776555888888888776 7788899999999999999999998733389999999999999999


Q ss_pred             CCccchhhh-CCCCCCEEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCccccCCCCCccccCCCC
Q 027793           83 FESLPTGIS-QLQRLKCLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNS  149 (219)
Q Consensus        83 l~~lp~~l~-~l~~L~~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~  149 (219)
                      |+.+|.... +++++..||++. +.++++|+.+   .+|+.||+++ +.++.+|...+.+......+.||.
T Consensus       240 i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnlhL~~L~leGNP  308 (565)
T KOG0472|consen  240 IEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNLHLKFLALEGNP  308 (565)
T ss_pred             HHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccC-CccccCCcccccceeeehhhcCCc
Confidence            999998775 899999999999 5678899764   6889999988 578999988887744444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=5.3e-14  Score=118.51  Aligned_cols=178  Identities=26%  Similarity=0.304  Sum_probs=144.6

Q ss_pred             ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCc
Q 027793            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHN   82 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~   82 (219)
                      -...|++.|++.++|..+..+..|..+.++.| ....+|..+.++..|.++|++.|++. +|..+..++ |+.|.+++|+
T Consensus        77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence            34678889999999999888889999999988 55678889999999999999999987 788777776 9999999999


Q ss_pred             CCccchhhhCCCCCCEEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcC
Q 027793           83 FESLPTGISQLQRLKCLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVN  159 (219)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~  159 (219)
                      ++.+|..++....|..|+.+.| .+..+|..+   .+|+.|.+.. +.+..+|+....+            .+..++| .
T Consensus       155 l~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~L------------pLi~lDf-S  219 (722)
T KOG0532|consen  155 LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSL------------PLIRLDF-S  219 (722)
T ss_pred             cccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCC------------ceeeeec-c
Confidence            9999999998899999999985 566677543   6788888888 5688888888777            7788999 5


Q ss_pred             CcccccccccchhHhHHHHHhhhCCCcccccccceeccCeeeeeeEEeeceeec
Q 027793          160 CVKLHKGTERNFFANFQRRVHNALPGILHRKVDRKLIDGVESAFVYVEVGFHTA  213 (219)
Q Consensus       160 c~~l~~~~~~~~~~~~~~~~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  213 (219)
                      |.++..++.  -|..             .+++..+.++.++++.+|+.+|.+|.
T Consensus       220 cNkis~iPv--~fr~-------------m~~Lq~l~LenNPLqSPPAqIC~kGk  258 (722)
T KOG0532|consen  220 CNKISYLPV--DFRK-------------MRHLQVLQLENNPLQSPPAQICEKGK  258 (722)
T ss_pred             cCceeecch--hhhh-------------hhhheeeeeccCCCCCChHHHHhccc
Confidence            668877764  1111             34666777888888888888887653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.26  E-value=6e-13  Score=112.72  Aligned_cols=124  Identities=23%  Similarity=0.260  Sum_probs=66.2

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--cc--------------
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--IL--------------   64 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p--------------   64 (219)
                      .++++|+++.|+++.+.. ++..+++|+.|+++.|.+...-++++.-.++|++|+++.|.+.  -+              
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL  348 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL  348 (873)
T ss_pred             cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence            345555555555555433 2445555555555555444444444445555555555555544  11              


Q ss_pred             ----------ccCCCCCCCCEEEecCCcCC-cc---chhhhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCCc
Q 027793           65 ----------SGLSSLSSLKCLELSGHNFE-SL---PTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCK  126 (219)
Q Consensus        65 ----------~~~~~l~~L~~L~l~~n~l~-~l---p~~l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~~  126 (219)
                                ..|..+++|+.||+++|.++ .+   ...+..+++|+.|++.| +.++.+|.    .+..|++|++.+|.
T Consensus       349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence                      23455566666666666644 22   22345566666666666 34555653    24567777776644

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.17  E-value=3.2e-10  Score=101.59  Aligned_cols=29  Identities=31%  Similarity=0.326  Sum_probs=13.0

Q ss_pred             CCCEEeccCCCCCCcCCCCCCCCCeEeccC
Q 027793           95 RLKCLHLINCNMIRSLPELPFCLNYLNTSD  124 (219)
Q Consensus        95 ~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~  124 (219)
                      +|+.|++++| .+..+|..+.+|+.|++++
T Consensus       343 ~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~  371 (788)
T PRK15387        343 GLQELSVSDN-QLASLPTLPSELYKLWAYN  371 (788)
T ss_pred             ccceEecCCC-ccCCCCCCCcccceehhhc
Confidence            4555555543 3334444444444444443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.16  E-value=1.2e-10  Score=104.40  Aligned_cols=144  Identities=20%  Similarity=0.246  Sum_probs=84.3

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~   80 (219)
                      ++|++|++++|.++.+|..+.  .+|+.|++++|.+ ..+|..+.  .+|+.|++++|.+. +|..+.  ++|+.|++++
T Consensus       220 ~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L-~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~  292 (754)
T PRK15370        220 GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI-TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYD  292 (754)
T ss_pred             cCCCEEECCCCccccCChhhh--ccccEEECcCCcc-CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCC
Confidence            468888888888888876543  4677888887754 35665543  46777777777655 554442  4677777777


Q ss_pred             CcCCccchhhh-------------------CCCCCCEEeccCCCCCCcCCCC-CCCCCeEeccCCcCCCcCCccccCCCC
Q 027793           81 HNFESLPTGIS-------------------QLQRLKCLHLINCNMIRSLPEL-PFCLNYLNTSDCKRLQSLPKISSCLET  140 (219)
Q Consensus        81 n~l~~lp~~l~-------------------~l~~L~~L~l~~~~~l~~lp~~-~~~L~~L~l~~~~~l~~lp~~~~~~~~  140 (219)
                      |.++.+|..+.                   -.++|+.|++++|. +..+|.. +++|+.|++++| .+..+|..+.    
T Consensus       293 N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~lp----  366 (754)
T PRK15370        293 NSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKN-QITVLPETLP----  366 (754)
T ss_pred             CccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChhhcCcccEEECCCC-CCCcCChhhc----
Confidence            77766654332                   01344555555432 3334432 245566666554 3444443221    


Q ss_pred             CccccCCCCCCCeEEEEcCCcccccccc
Q 027793          141 PSNQTRGNSYLPVMFKFVNCVKLHKGTE  168 (219)
Q Consensus       141 ~~~~~~~~~~~l~~l~~~~c~~l~~~~~  168 (219)
                               ..++.|++++| .+..++.
T Consensus       367 ---------~~L~~LdLs~N-~Lt~LP~  384 (754)
T PRK15370        367 ---------PTITTLDVSRN-ALTNLPE  384 (754)
T ss_pred             ---------CCcCEEECCCC-cCCCCCH
Confidence                     14557888777 5666554

>PLN03150 hypothetical protein; Provisional

Probab=99.14  E-value=1.6e-10  Score=102.50  Aligned_cols=108  Identities=29%  Similarity=0.421  Sum_probs=90.8

Q ss_pred             CCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecCCcCC-ccchhhhCCCCCCEEecc
Q 027793           26 GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLI  102 (219)
Q Consensus        26 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~  102 (219)
                      .++.|++++|.+.+.+|..+..+++|+.|++++|.+.  +|..++.+++|+.|++++|.++ .+|..++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3778899998888889999999999999999999875  7888899999999999999987 788889999999999999


Q ss_pred             CCCCCCcCCCCC----CCCCeEeccCCcCCCcCCc
Q 027793          103 NCNMIRSLPELP----FCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus       103 ~~~~l~~lp~~~----~~L~~L~l~~~~~l~~lp~  133 (219)
                      +|+..+.+|..+    .++..+++.+|..+...|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            988888888654    3556788888877766553

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.14  E-value=1.1e-10  Score=104.66  Aligned_cols=111  Identities=26%  Similarity=0.371  Sum_probs=48.7

Q ss_pred             ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCc
Q 027793            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHN   82 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~   82 (219)
                      |+.|++++|+++.+|..+.  .+|++|++++|.+ ..+|..+.  ++|+.|++++|.+. +|..+.  .+|+.|++++|+
T Consensus       201 L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~  273 (754)
T PRK15370        201 ITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK  273 (754)
T ss_pred             CcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence            4444555555544444322  3455555554432 23343221  24555555555443 333322  245555555555


Q ss_pred             CCccchhhhCCCCCCEEeccCCCCCCcCCCCC-CCCCeEeccC
Q 027793           83 FESLPTGISQLQRLKCLHLINCNMIRSLPELP-FCLNYLNTSD  124 (219)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~-~~L~~L~l~~  124 (219)
                      ++.+|..+.  ++|+.|++++| .++.+|..+ .+|+.|++++
T Consensus       274 L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~  313 (754)
T PRK15370        274 ISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQS  313 (754)
T ss_pred             cCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcC
Confidence            555554332  34555555553 233344321 2344444444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.07  E-value=6.9e-10  Score=99.52  Aligned_cols=116  Identities=26%  Similarity=0.274  Sum_probs=72.4

Q ss_pred             ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCc
Q 027793            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHN   82 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~   82 (219)
                      -..|+++.+.++.+|+.+.  ++|+.|++.+|. ++.+|.   .+++|++|++++|.+. +|..   .++|+.|++++|.
T Consensus       203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~  273 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP  273 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence            3567888888888887654  367888888774 344554   2567888888887765 4432   3466677777777


Q ss_pred             CCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccCCcCCCcCCc
Q 027793           83 FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~  133 (219)
                      ++.+|..+   .+|+.|++++| .++.+|..+++|+.|++++| .++.+|.
T Consensus       274 L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~  319 (788)
T PRK15387        274 LTHLPALP---SGLCKLWIFGN-QLTSLPVLPPGLQELSVSDN-QLASLPA  319 (788)
T ss_pred             hhhhhhch---hhcCEEECcCC-ccccccccccccceeECCCC-ccccCCC
Confidence            66665422   34556666664 34556655566666666664 4444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.07  E-value=6.5e-12  Score=111.11  Aligned_cols=128  Identities=27%  Similarity=0.372  Sum_probs=80.0

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCC----------------------CCCccccCCCCCCcEEeccccc
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKL----------------------GFLPESLCNLKKLQKLCLSQCR   60 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~----------------------~~~p~~~~~l~~L~~L~l~~~~   60 (219)
                      +|++++++.|+++.+|.+++.+.+|+.++..+|.+.                      ..+|+....+++|++|++..|.
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            567777777777777777777777777777766431                      2334445556677777777766


Q ss_pred             cc---------------------------------------------------ccccCCCCCCCCEEEecCCcCCccchh
Q 027793           61 CL---------------------------------------------------ILSGLSSLSSLKCLELSGHNFESLPTG   89 (219)
Q Consensus        61 ~~---------------------------------------------------~p~~~~~l~~L~~L~l~~n~l~~lp~~   89 (219)
                      +.                                                   ..+.+.++++|+.|++++|++.++|++
T Consensus       322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas  401 (1081)
T KOG0618|consen  322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS  401 (1081)
T ss_pred             ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence            54                                                   011344567788888888888877764


Q ss_pred             -hhCCCCCCEEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCC
Q 027793           90 -ISQLQRLKCLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        90 -l~~l~~L~~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp  132 (219)
                       +.++..|++|++||| .++.+|...   +.|++|...+ +.+..+|
T Consensus       402 ~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP  446 (1081)
T KOG0618|consen  402 KLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP  446 (1081)
T ss_pred             HHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech
Confidence             467777788888874 455555432   3344444333 3344444

>PLN03150 hypothetical protein; Provisional

Probab=99.05  E-value=5.8e-10  Score=98.97  Aligned_cols=107  Identities=21%  Similarity=0.373  Sum_probs=72.1

Q ss_pred             ccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793            4 LQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         4 L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~   80 (219)
                      ++.|++++|.++. +|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.  +|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            4566777776665 6666777777777777777666677777777777777777777665  666677777777777777


Q ss_pred             CcCC-ccchhhhCC-CCCCEEeccCCCCCCcC
Q 027793           81 HNFE-SLPTGISQL-QRLKCLHLINCNMIRSL  110 (219)
Q Consensus        81 n~l~-~lp~~l~~l-~~L~~L~l~~~~~l~~l  110 (219)
                      |.++ .+|..++.. .++..+++.+|..+...
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCC
Confidence            7766 667666543 35566666666544433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=1.6e-10  Score=86.02  Aligned_cols=118  Identities=27%  Similarity=0.325  Sum_probs=48.9

Q ss_pred             CccEEEeecCCCcccCcccc-CCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccC-CCCCCCCEEEec
Q 027793            3 LLQEIDLFLSGIKELPSSIE-HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGL-SSLSSLKCLELS   79 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~-~~l~~L~~L~l~   79 (219)
                      ++++|++++|.|+.+.. ++ .+.+|+.|++++|.+.. ++ .+..++.|++|++++|.+. +...+ ..+++|+.|+++
T Consensus        20 ~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   20 KLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS   96 (175)
T ss_dssp             ----------------S---TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred             ccccccccccccccccc-hhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence            57899999999998865 55 58899999999996544 43 5778999999999999987 43444 358999999999


Q ss_pred             CCcCCccc--hhhhCCCCCCEEeccCCCCCCcCCC-------CCCCCCeEeccC
Q 027793           80 GHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE-------LPFCLNYLNTSD  124 (219)
Q Consensus        80 ~n~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~-------~~~~L~~L~l~~  124 (219)
                      +|+|..+.  ..+..+++|+.|++.+|+... .+.       .+++|+.||-..
T Consensus        97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             TS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEE
T ss_pred             CCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEE
Confidence            99987543  356789999999999987543 333       147888888644

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=3.8e-10  Score=83.99  Aligned_cols=115  Identities=30%  Similarity=0.326  Sum_probs=38.5

Q ss_pred             eecCCCcccCccccCCCCCcEEeccCCCCCCCCccccC-CCCCCcEEecccccccccccCCCCCCCCEEEecCCcCCccc
Q 027793            9 LFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLP   87 (219)
Q Consensus         9 l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp   87 (219)
                      +..+.|...+. +.+..++++|++.+|.+.. + +.++ .+.+|+.|++++|.+.--+.+..++.|+.|++++|.|+++.
T Consensus         4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~   80 (175)
T PF14580_consen    4 LTANMIEQIAQ-YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS   80 (175)
T ss_dssp             -----------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C
T ss_pred             ccccccccccc-ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc
Confidence            44455666665 5566688999999996544 3 2455 58899999999999884457888999999999999999887


Q ss_pred             hhh-hCCCCCCEEeccCCCCCCcCCCC-----CCCCCeEeccCCcC
Q 027793           88 TGI-SQLQRLKCLHLINCNMIRSLPEL-----PFCLNYLNTSDCKR  127 (219)
Q Consensus        88 ~~l-~~l~~L~~L~l~~~~~l~~lp~~-----~~~L~~L~l~~~~~  127 (219)
                      ..+ ..+++|+.|++++| .+..+.+.     +++|+.|++.+|+-
T Consensus        81 ~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   81 EGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred             cchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence            666 46899999999985 45555432     47888888888753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.01  E-value=5.1e-11  Score=97.14  Aligned_cols=83  Identities=28%  Similarity=0.223  Sum_probs=34.3

Q ss_pred             cCCCCCcEEeccCCCCCCCCccccCCCCC---CcEEeccccccc------ccccCCCC-CCCCEEEecCCcCC-----cc
Q 027793           22 EHIEGLKCLRLNSCTKLGFLPESLCNLKK---LQKLCLSQCRCL------ILSGLSSL-SSLKCLELSGHNFE-----SL   86 (219)
Q Consensus        22 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~---L~~L~l~~~~~~------~p~~~~~l-~~L~~L~l~~n~l~-----~l   86 (219)
                      ..+++|+.|++++|.+.+..+..+..+.+   |++|++++|...      +...+..+ ++|+.|++++|.++     .+
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            33445555555544443333333322222   555555544432      11223333 44455555555444     12


Q ss_pred             chhhhCCCCCCEEeccCC
Q 027793           87 PTGISQLQRLKCLHLINC  104 (219)
Q Consensus        87 p~~l~~l~~L~~L~l~~~  104 (219)
                      +..+..+++|++|++++|
T Consensus       158 ~~~~~~~~~L~~L~l~~n  175 (319)
T cd00116         158 AKALRANRDLKELNLANN  175 (319)
T ss_pred             HHHHHhCCCcCEEECcCC
Confidence            223333444555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.97  E-value=3.9e-11  Score=106.31  Aligned_cols=108  Identities=29%  Similarity=0.359  Sum_probs=88.1

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n   81 (219)
                      +|+.|++++|.+..+|..+..+.+|+.|+++.| .+...|.+...+.+|+++.+.+|... +|..+..+++|++|++++|
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N  124 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN  124 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence            378899999998888888888889999999887 66777888888899999999988876 8888888999999999999


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCC
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLP  111 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp  111 (219)
                      .+..+|..+..+..+..+..++|..+..++
T Consensus       125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg  154 (1081)
T KOG0618|consen  125 HFGPIPLVIEVLTAEEELAASNNEKIQRLG  154 (1081)
T ss_pred             ccCCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence            988888877777777777777763333333

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=5.9e-10  Score=68.57  Aligned_cols=60  Identities=25%  Similarity=0.385  Sum_probs=48.6

Q ss_pred             CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccc
Q 027793            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC   61 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~   61 (219)
                      ++|++|++++|+++.+|+. |..+++|++|++++|.+...-|..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5788999999999998864 78899999999998876655556778888888888888763

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.92  E-value=6.8e-10  Score=90.51  Aligned_cols=126  Identities=27%  Similarity=0.268  Sum_probs=90.9

Q ss_pred             CCCccEEEeecCCCcc-cCccccCCCC---CcEEeccCCCCCC----CCccccCCC-CCCcEEeccccccc------ccc
Q 027793            1 MELLQEIDLFLSGIKE-LPSSIEHIEG---LKCLRLNSCTKLG----FLPESLCNL-KKLQKLCLSQCRCL------ILS   65 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~-lp~~~~~l~~---L~~L~l~~~~~~~----~~p~~~~~l-~~L~~L~l~~~~~~------~p~   65 (219)
                      +++|+.|++++|.+.. .+..+..+.+   |++|++++|.+..    .+...+..+ ++|+.|++++|.+.      ++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            3689999999998875 4444444444   9999999987653    233355666 89999999999866      344


Q ss_pred             cCCCCCCCCEEEecCCcCC-----ccchhhhCCCCCCEEeccCCCCCCc----CC---CCCCCCCeEeccCCc
Q 027793           66 GLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIRS----LP---ELPFCLNYLNTSDCK  126 (219)
Q Consensus        66 ~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~l~~----lp---~~~~~L~~L~l~~~~  126 (219)
                      .+..+++|++|++++|.++     .++..+...++|+.|++++|.....    ++   ...++|++|++++|.
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            5667788999999999887     2444566677999999998754321    11   224689999999975

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.85  E-value=2.2e-10  Score=90.52  Aligned_cols=125  Identities=27%  Similarity=0.263  Sum_probs=90.8

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n   81 (219)
                      .|+++|+++|.|+.+..++.-+++++.|++++|.+...-  .+..+++|+.||+++|... +-.+=..+-++++|.+++|
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence            477888999988888888888888999999888654432  3677888999999988765 3333345667888888888


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCCC-----CCCCCCeEeccCCcCCCcCC
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-----~~~~L~~L~l~~~~~l~~lp  132 (219)
                      .+.++. .++++-+|..||+++|+ ++.+..     .++.|+++.+.+|+ +..++
T Consensus       363 ~iE~LS-GL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v  415 (490)
T KOG1259|consen  363 KIETLS-GLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP-LAGSV  415 (490)
T ss_pred             hHhhhh-hhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence            888775 67888888899998854 333321     24577788887765 44444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.77  E-value=5e-10  Score=91.20  Aligned_cols=123  Identities=21%  Similarity=0.241  Sum_probs=89.0

Q ss_pred             CccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccc-cccc-cc-ccCCCCCCCCEEEe
Q 027793            3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQ-CRCL-IL-SGLSSLSSLKCLEL   78 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~-~p-~~~~~l~~L~~L~l   78 (219)
                      .-..+++..|.|+.+|+. |+.+++|+.||+++|.+....|++|..+++|..|.+.+ |.+. +| ..|+++.+++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            346789999999999886 89999999999999988888899999999998888887 6655 44 34667777777777


Q ss_pred             cCCcCCc-cchhhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCc
Q 027793           79 SGHNFES-LPTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCK  126 (219)
Q Consensus        79 ~~n~l~~-lp~~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~  126 (219)
                      .-|++.. ....+..+++|..|.+..| ..+.++..    ..+++.+++..++
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence            7677663 3445667777777777663 34445431    2355555555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.71  E-value=8.1e-09  Score=86.97  Aligned_cols=103  Identities=36%  Similarity=0.434  Sum_probs=76.8

Q ss_pred             CCccEEEeecCCCcccCccccCCC-CCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIE-GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~   79 (219)
                      +.++.|++.+|.++++|+....+. +|+.|++++| ....+|..+..+++|+.|++++|.+. +|...+..++|+.|+++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence            357788888888888888766664 8888888887 44555556778888888888888876 55555577788888888


Q ss_pred             CCcCCccchhhhCCCCCCEEeccCCC
Q 027793           80 GHNFESLPTGISQLQRLKCLHLINCN  105 (219)
Q Consensus        80 ~n~l~~lp~~l~~l~~L~~L~l~~~~  105 (219)
                      +|.++.+|........|+++.+++|.
T Consensus       195 ~N~i~~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         195 GNKISDLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             CCccccCchhhhhhhhhhhhhhcCCc
Confidence            88888888665556667777777753

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=1.6e-08  Score=62.08  Aligned_cols=56  Identities=38%  Similarity=0.537  Sum_probs=33.2

Q ss_pred             CCcEEeccccccc-cc-ccCCCCCCCCEEEecCCcCCccch-hhhCCCCCCEEeccCCC
Q 027793           50 KLQKLCLSQCRCL-IL-SGLSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCN  105 (219)
Q Consensus        50 ~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~  105 (219)
                      +|++|++++|.+. +| ..+.++++|++|++++|.++.++. +|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4555555555444 33 345666666666666666665543 55666677777766653

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.70  E-value=1.4e-07  Score=78.63  Aligned_cols=78  Identities=24%  Similarity=0.498  Sum_probs=57.7

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEec
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~   79 (219)
                      .+++.|++++|.++.+|. +  -.+|+.|++++|.....+|..+  .++|++|++++|...  +|      .+|+.|++.
T Consensus        52 ~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~  120 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIK  120 (426)
T ss_pred             cCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEEeC
Confidence            578899999999999883 2  2469999999987777788655  368999999998432  44      357777787


Q ss_pred             CCc---CCccchhh
Q 027793           80 GHN---FESLPTGI   90 (219)
Q Consensus        80 ~n~---l~~lp~~l   90 (219)
                      ++.   +..+|..+
T Consensus       121 ~n~~~~L~~LPssL  134 (426)
T PRK15386        121 GSATDSIKNVPNGL  134 (426)
T ss_pred             CCCCcccccCcchH
Confidence            665   44666544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.70  E-value=1.6e-09  Score=91.99  Aligned_cols=87  Identities=30%  Similarity=0.399  Sum_probs=45.4

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n   81 (219)
                      .|+++|++.|.++.+|..+..|+ |+.|.+++| ..+.+|+.++....|..||.+.|.+. +|..++++.+|+.|.+..|
T Consensus       122 ~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn  199 (722)
T KOG0532|consen  122 ALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN  199 (722)
T ss_pred             HHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh
Confidence            35555666666666665555444 555555554 44555666665556666666666554 4444444444444444444


Q ss_pred             cCCccchhhh
Q 027793           82 NFESLPTGIS   91 (219)
Q Consensus        82 ~l~~lp~~l~   91 (219)
                      ++..+|..+.
T Consensus       200 ~l~~lp~El~  209 (722)
T KOG0532|consen  200 HLEDLPEELC  209 (722)
T ss_pred             hhhhCCHHHh
Confidence            4444444333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.62  E-value=2.3e-08  Score=84.16  Aligned_cols=129  Identities=30%  Similarity=0.359  Sum_probs=81.5

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n   81 (219)
                      +|+.|++++|.+..+|..+..+++|+.|++++| ....+|...+..+.|+.|++++|.+. +|..+.....|+++.+++|
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence            678888888888888766788888888888887 34555555557777888888887766 5554444455777777777


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCC--cCCCCCCCCCeEeccCCcCCCcCCc
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIR--SLPELPFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~--~lp~~~~~L~~L~l~~~~~l~~lp~  133 (219)
                      ++...+..+.++.++..+.+.+|....  .....+++++.|++++ +.+++++.
T Consensus       220 ~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~  272 (394)
T COG4886         220 SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN-NQISSISS  272 (394)
T ss_pred             cceecchhhhhcccccccccCCceeeeccchhccccccceecccc-cccccccc
Confidence            655555556666666666655533222  1112234566666655 34555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.48  E-value=2.8e-08  Score=78.83  Aligned_cols=106  Identities=28%  Similarity=0.317  Sum_probs=81.7

Q ss_pred             CCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEecc
Q 027793           23 HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLI  102 (219)
Q Consensus        23 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~  102 (219)
                      .++.|+++|+++| .++.+.+++.-.|+++.|+++.|.+..-..+..+++|+.||+++|.++++..+-.++.+.++|.++
T Consensus       282 TWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  282 TWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            4567888999988 556666777778899999999998875566888889999999999988877666778888999998


Q ss_pred             CCCCCCcCCCC--CCCCCeEeccCCcCCCcC
Q 027793          103 NCNMIRSLPEL--PFCLNYLNTSDCKRLQSL  131 (219)
Q Consensus       103 ~~~~l~~lp~~--~~~L~~L~l~~~~~l~~l  131 (219)
                      +| .++.+...  +.+|..||+++| +++.+
T Consensus       361 ~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~l  389 (490)
T KOG1259|consen  361 QN-KIETLSGLRKLYSLVNLDLSSN-QIEEL  389 (490)
T ss_pred             hh-hHhhhhhhHhhhhheecccccc-chhhH
Confidence            84 55665543  458888998885 44443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.44  E-value=2e-07  Score=85.38  Aligned_cols=100  Identities=30%  Similarity=0.365  Sum_probs=50.3

Q ss_pred             ccEEEeecCC--CcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793            4 LQEIDLFLSG--IKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         4 L~~L~l~~~~--i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~   79 (219)
                      |+.|-+.+|.  +..++.. |..++.|++||+++|...+.+|..++.+-+|++|+++++.+. +|..++.+..|.+|++.
T Consensus       547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~  626 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE  626 (889)
T ss_pred             cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence            4444444443  3333333 444555555555555555555555555555555555555544 55555555555555555


Q ss_pred             CCcC-CccchhhhCCCCCCEEeccC
Q 027793           80 GHNF-ESLPTGISQLQRLKCLHLIN  103 (219)
Q Consensus        80 ~n~l-~~lp~~l~~l~~L~~L~l~~  103 (219)
                      .+.- ..+|.....+.+|++|.+..
T Consensus       627 ~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  627 VTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cccccccccchhhhcccccEEEeec
Confidence            5442 23333334455555555543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=4e-08  Score=81.16  Aligned_cols=102  Identities=21%  Similarity=0.123  Sum_probs=50.9

Q ss_pred             CccEEEeecCCCcccCc--cccCCCCCcEEeccCCCCCCC--CccccCCCCCCcEEecccccccccc---cCCCCCCCCE
Q 027793            3 LLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQCRCLILS---GLSSLSSLKC   75 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~p~---~~~~l~~L~~   75 (219)
                      +|+.+.+.++.+...+.  ....+++++.||+++|-+...  +-.....+|+|+.|+++.|....|.   .-..++.|+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~  201 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ  201 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence            45555555555544332  244566666666666522211  1122345666666666666554221   1123455566


Q ss_pred             EEecCCcCC--ccchhhhCCCCCCEEeccCC
Q 027793           76 LELSGHNFE--SLPTGISQLQRLKCLHLINC  104 (219)
Q Consensus        76 L~l~~n~l~--~lp~~l~~l~~L~~L~l~~~  104 (219)
                      |.++.|.++  ++-..+..+++|+.|++.+|
T Consensus       202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             EEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            666666655  33333444555666666554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.39  E-value=1.9e-07  Score=85.54  Aligned_cols=118  Identities=25%  Similarity=0.339  Sum_probs=59.4

Q ss_pred             cEEEeecCCCcccCccccCCCCCcEEeccCCCC-CCCCcc-ccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTK-LGFLPE-SLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~-~~~~p~-~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~   80 (219)
                      +...+.+|.+..++... ..++|++|-+.+|.. ...++. .|..++.|++||+++|...  +|..++.+-+|++|++++
T Consensus       526 rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~  604 (889)
T KOG4658|consen  526 RRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD  604 (889)
T ss_pred             eEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC
Confidence            33444444444444432 223455555555531 222222 2445666666666655433  566666666666666666


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEecc
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTS  123 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~  123 (219)
                      +.++.+|..+++++.|.+|++..+..+..+|..   +.+|++|.+.
T Consensus       605 t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  605 TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence            666666666666666666666555444444322   2445554443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.5e-07  Score=77.87  Aligned_cols=123  Identities=26%  Similarity=0.280  Sum_probs=75.2

Q ss_pred             CCCccEEEeecCCCccc---CccccCCCCCcEEeccCCCCCCCCccc-cCCCCCCcEEeccccccc---ccccCCCCCCC
Q 027793            1 MELLQEIDLFLSGIKEL---PSSIEHIEGLKCLRLNSCTKLGFLPES-LCNLKKLQKLCLSQCRCL---ILSGLSSLSSL   73 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L   73 (219)
                      |++++.||++.|-+..+   -.....+++|+.|+++.|.+.-..... -..+++|+.|.++.|.+.   +-..+..+|+|
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            56788899998877663   233567889999999888654333222 125778888888888876   22234456677


Q ss_pred             CEEEecCCc-CCccchhhhCCCCCCEEeccCCCCCCcCCC-----CCCCCCeEeccC
Q 027793           74 KCLELSGHN-FESLPTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSD  124 (219)
Q Consensus        74 ~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-----~~~~L~~L~l~~  124 (219)
                      +.|++.+|. +.........+..|+.|++++|+.+ .++.     .++.|+.|.++.
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccc
Confidence            777777774 2222222344566777777765443 2332     135566666655

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.29  E-value=7.6e-07  Score=50.69  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=29.6

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKL   38 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~   38 (219)
                      ++|++|++++|+|+++|+.++++++|++|++++|.+.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            5788999999999998888889999999999988543

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.28  E-value=1.1e-08  Score=89.21  Aligned_cols=118  Identities=22%  Similarity=0.210  Sum_probs=86.3

Q ss_pred             ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc-cCCCCCCCCEEEecCC
Q 027793            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-GLSSLSSLKCLELSGH   81 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-~~~~l~~L~~L~l~~n   81 (219)
                      |...++++|.+..+..++.-++.++.|++++|.+...-  .+..+++|++||+++|... +|. ...++. |+.|.+++|
T Consensus       166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN  242 (1096)
T KOG1859|consen  166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN  242 (1096)
T ss_pred             HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence            55677788888888877888889999999998665443  6778899999999998876 442 122333 888889988


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCCCC-----CCCCCeEeccCCc
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPEL-----PFCLNYLNTSDCK  126 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-----~~~L~~L~l~~~~  126 (219)
                      .++++- .+.++++|+.||++.| .+....+.     +..|+.|++.||+
T Consensus       243 ~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  243 ALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             HHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            888776 6778888999999884 44433332     2567777887765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.19  E-value=2.6e-07  Score=78.46  Aligned_cols=101  Identities=29%  Similarity=0.329  Sum_probs=64.2

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n   81 (219)
                      ++|+.|++.+|.|..+...+..+++|++|++++|.+...-  .+..++.|+.|++++|.+.....+..+++|+.+++++|
T Consensus        95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n  172 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYN  172 (414)
T ss_pred             cceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccCCccchhhhcccCCcc
Confidence            4566677777777666654566677777777776443322  34556667777777777664455556677777777777


Q ss_pred             cCCccchh-hhCCCCCCEEeccCC
Q 027793           82 NFESLPTG-ISQLQRLKCLHLINC  104 (219)
Q Consensus        82 ~l~~lp~~-l~~l~~L~~L~l~~~  104 (219)
                      .++.+... ...+.+++.+++.+|
T Consensus       173 ~i~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  173 RIVDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             hhhhhhhhhhhhccchHHHhccCC
Confidence            76655542 455666777777664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.18  E-value=3.2e-06  Score=48.13  Aligned_cols=39  Identities=33%  Similarity=0.520  Sum_probs=27.5

Q ss_pred             CCCCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcC
Q 027793           71 SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSL  110 (219)
Q Consensus        71 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~l  110 (219)
                      ++|++|++++|.|+.+|..++++++|+.|++++|+ ++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence            46788888888888887778888888888888764 3443

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.14  E-value=1.1e-06  Score=78.73  Aligned_cols=123  Identities=22%  Similarity=0.265  Sum_probs=79.1

Q ss_pred             CCccEEEeecCC-Ccc-cCcccc-CCCCCcEEeccCCCCCC-CCccccCCCCCCcEEecccccccccccCCCCCCCCEEE
Q 027793            2 ELLQEIDLFLSG-IKE-LPSSIE-HIEGLKCLRLNSCTKLG-FLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLE   77 (219)
Q Consensus         2 ~~L~~L~l~~~~-i~~-lp~~~~-~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~   77 (219)
                      .+|++|++++.. +.. .|..++ .+|+|+.|.+.+-.+.. .+..-..++|+|..||++++++.--.+++.+++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            367888888753 222 444443 46888888887643322 23334557888888888888776446777888888888


Q ss_pred             ecCCcCCccc--hhhhCCCCCCEEeccCCCCCCc---------CCCCCCCCCeEeccC
Q 027793           78 LSGHNFESLP--TGISQLQRLKCLHLINCNMIRS---------LPELPFCLNYLNTSD  124 (219)
Q Consensus        78 l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~l~~---------lp~~~~~L~~L~l~~  124 (219)
                      +.+-.+....  ..+.++++|+.||+|.-.....         -...++.|+.||.++
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            8776665433  2567788888888886332221         112356788888776

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=2.7e-07  Score=73.17  Aligned_cols=149  Identities=21%  Similarity=0.237  Sum_probs=91.6

Q ss_pred             CCccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCCCCc--cccCCCCCCcEEecccccccccc---cCCC-CCCCC
Q 027793            2 ELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLP--ESLCNLKKLQKLCLSQCRCLILS---GLSS-LSSLK   74 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~~~p~---~~~~-l~~L~   74 (219)
                      .+|+.|.+.++.+.+ +-..+.+-.+|+.+++++|+-.+...  -.+.+++.|+.|++++|...-+.   .+.. -++|+
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~  289 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT  289 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence            356666666666665 44446666777888887775444321  13456778888888888754111   1111 14677


Q ss_pred             EEEecCCc--C--CccchhhhCCCCCCEEeccCCCCCCcCC----CCCCCCCeEeccCCcCCCcCCccccCCCCCccccC
Q 027793           75 CLELSGHN--F--ESLPTGISQLQRLKCLHLINCNMIRSLP----ELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTR  146 (219)
Q Consensus        75 ~L~l~~n~--l--~~lp~~l~~l~~L~~L~l~~~~~l~~lp----~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~  146 (219)
                      .|+++|+.  +  ..+..-...+++|.+||++.|..++.--    ..++.|++|.++.|..+.  |..+-.+        
T Consensus       290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l--------  359 (419)
T KOG2120|consen  290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLEL--------  359 (419)
T ss_pred             hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeeee--------
Confidence            88888875  2  2343344789999999999988766410    124789999999987543  2222111        


Q ss_pred             CCCCCCeEEEEcCC
Q 027793          147 GNSYLPVMFKFVNC  160 (219)
Q Consensus       147 ~~~~~l~~l~~~~c  160 (219)
                      +....+.++++.+|
T Consensus       360 ~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  360 NSKPSLVYLDVFGC  373 (419)
T ss_pred             ccCcceEEEEeccc
Confidence            11125678998887

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.12  E-value=9e-07  Score=75.18  Aligned_cols=120  Identities=28%  Similarity=0.332  Sum_probs=82.4

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCc
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN   82 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~   82 (219)
                      .++.+++..|.++.+-..+..+.+|+.+++.+|.+.+ +...+..+++|++|++++|.+.--..+..++.|+.|++++|.
T Consensus        73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNL  151 (414)
T ss_pred             hHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccchhhccchhhheeccCc
Confidence            4556667777777744446778888888888875443 332366788888888888887744566677778888888888


Q ss_pred             CCccchhhhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCC
Q 027793           83 FESLPTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDC  125 (219)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~  125 (219)
                      |+.+. .+..+..|+.+++++|.. ..+..    ...+++.+++.++
T Consensus       152 i~~~~-~~~~l~~L~~l~l~~n~i-~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  152 ISDIS-GLESLKSLKLLDLSYNRI-VDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             chhcc-CCccchhhhcccCCcchh-hhhhhhhhhhccchHHHhccCC
Confidence            88776 455578888888888543 33332    2356666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.12  E-value=4.1e-06  Score=62.92  Aligned_cols=78  Identities=24%  Similarity=0.336  Sum_probs=36.5

Q ss_pred             CCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccC-CCCCCCCEEEecCCcCCccch--hhhCCCCCCEEec
Q 027793           26 GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGL-SSLSSLKCLELSGHNFESLPT--GISQLQRLKCLHL  101 (219)
Q Consensus        26 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~-~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l  101 (219)
                      ....+|+++|.+.. + +.+..++.|.+|.+.+|.+. +.+.+ .-+++|+.|.+.+|+|..+-+  .+..+++|++|.+
T Consensus        43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            34455555553322 1 13445555556666555554 21122 233455556666655543321  2344555555555


Q ss_pred             cCCC
Q 027793          102 INCN  105 (219)
Q Consensus       102 ~~~~  105 (219)
                      -+|+
T Consensus       121 l~Np  124 (233)
T KOG1644|consen  121 LGNP  124 (233)
T ss_pred             cCCc
Confidence            5543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.01  E-value=4.6e-07  Score=64.04  Aligned_cols=106  Identities=16%  Similarity=0.204  Sum_probs=78.5

Q ss_pred             ccEEEeecCCCcccCcc---ccCCCCCcEEeccCCCCCCCCccccC-CCCCCcEEeccccccc-ccccCCCCCCCCEEEe
Q 027793            4 LQEIDLFLSGIKELPSS---IEHIEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLEL   78 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~---~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l   78 (219)
                      +-.++++.+.+-.+++.   +.....|+..++++| ..+.+|+.+. .++....+++++|.+. +|..+..++.|+.+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            34567777766655554   455566777889888 4455666554 4668889999998877 8888888999999999


Q ss_pred             cCCcCCccchhhhCCCCCCEEeccCCCCCCcCC
Q 027793           79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLP  111 (219)
Q Consensus        79 ~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp  111 (219)
                      +.|++...|..+..+.+|..|+..+| ....+|
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid  139 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEID  139 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCC-ccccCc
Confidence            99999888888877888888887764 444554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.00  E-value=2.3e-06  Score=69.09  Aligned_cols=178  Identities=17%  Similarity=0.145  Sum_probs=102.6

Q ss_pred             CCccEEEeecCCCcc--cCc---cccCCCCCcEEeccCCCCCCCCc-------------cccCCCCCCcEEeccccccc-
Q 027793            2 ELLQEIDLFLSGIKE--LPS---SIEHIEGLKCLRLNSCTKLGFLP-------------ESLCNLKKLQKLCLSQCRCL-   62 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~--lp~---~~~~l~~L~~L~l~~~~~~~~~p-------------~~~~~l~~L~~L~l~~~~~~-   62 (219)
                      ++|++|++|+|.+..  ++.   -+.++..|++|++.+|.+.....             .-+..-++|+++...+|+.. 
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            467888888876654  222   24567778888887774422211             12334567888888887765 


Q ss_pred             -----ccccCCCCCCCCEEEecCCcCC-----ccchhhhCCCCCCEEeccCCCCCC--------cCCCCCCCCCeEeccC
Q 027793           63 -----ILSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIR--------SLPELPFCLNYLNTSD  124 (219)
Q Consensus        63 -----~p~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~l~--------~lp~~~~~L~~L~l~~  124 (219)
                           +...+...+.|+.+.+..|.|.     .+-.++..++.|+.||+..|.+..        .+|. .++|+.+++.+
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~L~El~l~d  250 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPHLRELNLGD  250 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cchheeecccc
Confidence                 4445666788888888888764     234567888889999988865432        1222 24788888888


Q ss_pred             CcCCCcCCcccc-CCCCCccccCCCCCCCeEEEEcCCcccccccc---cchhHhHHHHHhhhCCCccc
Q 027793          125 CKRLQSLPKISS-CLETPSNQTRGNSYLPVMFKFVNCVKLHKGTE---RNFFANFQRRVHNALPGILH  188 (219)
Q Consensus       125 ~~~l~~lp~~~~-~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~---~~~~~~~~~~~~~~lp~~~~  188 (219)
                      |..-..-...+. .+       ......+..+.+.+| .++....   .......+.+....+.+++.
T Consensus       251 cll~~~Ga~a~~~al-------~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  251 CLLENEGAIAFVDAL-------KESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccHHHHHHHH-------hccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            853222111111 00       001124446777666 3333221   12234456666666666664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.98  E-value=2.6e-06  Score=69.97  Aligned_cols=85  Identities=21%  Similarity=0.264  Sum_probs=68.7

Q ss_pred             ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecCCcCCc-cchhhhCCCCCC
Q 027793           21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHNFES-LPTGISQLQRLK   97 (219)
Q Consensus        21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~   97 (219)
                      |..+++|+.|++++|.+...-+.+|....+++.|.+..|++.  --..|.++..|+.|++.+|+|+. -|.+|..+.+|.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            788899999999988777777778888889999999888876  22456788888999999999884 466778888888


Q ss_pred             EEeccCCC
Q 027793           98 CLHLINCN  105 (219)
Q Consensus        98 ~L~l~~~~  105 (219)
                      +|++-.|.
T Consensus       350 ~l~l~~Np  357 (498)
T KOG4237|consen  350 TLNLLSNP  357 (498)
T ss_pred             eeehccCc
Confidence            88887654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=1.4e-07  Score=74.80  Aligned_cols=127  Identities=26%  Similarity=0.207  Sum_probs=82.8

Q ss_pred             ccEEEeecCCCcc--cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----ccccCCCCCCCCEEE
Q 027793            4 LQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLE   77 (219)
Q Consensus         4 L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~   77 (219)
                      |+++|++...|+.  +...+..+.+|+.|.+.++.....+-..+.+-.+|+.|+++.|...    .---+.+++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            6677787776664  4444667778888888887766666666777778888888887654    222356677888888


Q ss_pred             ecCCcCC--ccchhhhCC-CCCCEEeccCCCCCC------cCCCCCCCCCeEeccCCcCCCc
Q 027793           78 LSGHNFE--SLPTGISQL-QRLKCLHLINCNMIR------SLPELPFCLNYLNTSDCKRLQS  130 (219)
Q Consensus        78 l~~n~l~--~lp~~l~~l-~~L~~L~l~~~~~l~------~lp~~~~~L~~L~l~~~~~l~~  130 (219)
                      ++.|.+.  .+...+.+. .+|+.|+++|+..--      .+....+.|.+||+++|..++.
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~  328 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN  328 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc
Confidence            8888754  333333332 467778888764311      1112246788888888877664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=1e-06  Score=62.29  Aligned_cols=105  Identities=19%  Similarity=0.339  Sum_probs=67.5

Q ss_pred             CCcEEeccCCCCCCCCcc---ccCCCCCCcEEeccccccc-ccccCCC-CCCCCEEEecCCcCCccchhhhCCCCCCEEe
Q 027793           26 GLKCLRLNSCTKLGFLPE---SLCNLKKLQKLCLSQCRCL-ILSGLSS-LSSLKCLELSGHNFESLPTGISQLQRLKCLH  100 (219)
Q Consensus        26 ~L~~L~l~~~~~~~~~p~---~~~~l~~L~~L~l~~~~~~-~p~~~~~-l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~  100 (219)
                      .+..++++.|. +..+++   .+.....|...++++|.+. +|+.+.. .+.++.+++++|.++.+|..+..++.|+.|+
T Consensus        28 E~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             Hhhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            45667777773 344444   3445566777788888766 6665543 3478888888888888888888888888888


Q ss_pred             ccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCc
Q 027793          101 LINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus       101 l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~  133 (219)
                      ++.|. +...|..+   .++..|+..+ +....+|-
T Consensus       107 l~~N~-l~~~p~vi~~L~~l~~Lds~~-na~~eid~  140 (177)
T KOG4579|consen  107 LRFNP-LNAEPRVIAPLIKLDMLDSPE-NARAEIDV  140 (177)
T ss_pred             cccCc-cccchHHHHHHHhHHHhcCCC-CccccCcH
Confidence            88754 44455433   2444444444 34455553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.87  E-value=3.7e-07  Score=80.07  Aligned_cols=101  Identities=25%  Similarity=0.281  Sum_probs=79.7

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccc-cCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPES-LCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~   80 (219)
                      +.++.|+++.|+++++. .+..+++|++||++.|. ...+|.- ...+ +|+.|.+++|...--.++.++.+|+.||+++
T Consensus       187 ~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTLRGIENLKSLYGLDLSY  263 (1096)
T ss_pred             HHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhhhhHHhhhhhhccchhH
Confidence            56889999999999877 47889999999999984 4555542 2233 4999999999877556778899999999999


Q ss_pred             CcCCccc--hhhhCCCCCCEEeccCCC
Q 027793           81 HNFESLP--TGISQLQRLKCLHLINCN  105 (219)
Q Consensus        81 n~l~~lp--~~l~~l~~L~~L~l~~~~  105 (219)
                      |-+....  ..++.+..|+.|++.||+
T Consensus       264 Nll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  264 NLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            9876433  245677889999999975

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.80  E-value=5.9e-06  Score=66.74  Aligned_cols=103  Identities=19%  Similarity=0.151  Sum_probs=50.8

Q ss_pred             CccEEEeecCCCcccCc-----cccCCCCCcEEeccCCCCCCC----CccccCCCCCCcEEeccccccc------ccccC
Q 027793            3 LLQEIDLFLSGIKELPS-----SIEHIEGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCL------ILSGL   67 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~-----~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~------~p~~~   67 (219)
                      +|+++....|++.+-+.     .|...+.|+.+.++.|.+...    +...+..+++|++||+.+|.+.      +...+
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL  237 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL  237 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence            45555555555554222     244445566666555543211    1223445566666666666544      33344


Q ss_pred             CCCCCCCEEEecCCcCC-----ccchhh-hCCCCCCEEeccCCC
Q 027793           68 SSLSSLKCLELSGHNFE-----SLPTGI-SQLQRLKCLHLINCN  105 (219)
Q Consensus        68 ~~l~~L~~L~l~~n~l~-----~lp~~l-~~l~~L~~L~l~~~~  105 (219)
                      ..+++|+.+++++|.++     .+-..+ ...++|+.+.+.+|.
T Consensus       238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence            45555666666666554     122222 224556666666554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=3.6e-05  Score=64.51  Aligned_cols=84  Identities=20%  Similarity=0.384  Sum_probs=48.2

Q ss_pred             CCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCc-CCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccC
Q 027793           47 NLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHN-FESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSD  124 (219)
Q Consensus        47 ~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~  124 (219)
                      .+.++..|++++|.+. +|.   -..+|+.|.+++|. ++.+|..+.  ++|+.|++++|..+..+|.   +|+.|++++
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~---sLe~L~L~~  121 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE---SVRSLEIKG  121 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc---ccceEEeCC
Confidence            3567777777777544 441   12357777777654 566665442  4677777777655555543   455555543


Q ss_pred             --CcCCCcCCccccCC
Q 027793          125 --CKRLQSLPKISSCL  138 (219)
Q Consensus       125 --~~~l~~lp~~~~~~  138 (219)
                        |..+..+|..+..+
T Consensus       122 n~~~~L~~LPssLk~L  137 (426)
T PRK15386        122 SATDSIKNVPNGLTSL  137 (426)
T ss_pred             CCCcccccCcchHhhe
Confidence              23355566554433

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.56  E-value=3.9e-05  Score=59.79  Aligned_cols=100  Identities=29%  Similarity=0.370  Sum_probs=63.1

Q ss_pred             cCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----ccccCCCCCCCCEEEecCCcCCc---cchhhhCCC
Q 027793           22 EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGHNFES---LPTGISQLQ   94 (219)
Q Consensus        22 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~---lp~~l~~l~   94 (219)
                      ..+..|+.+.+.++..++..  .+-.+++|+.|.++.|...    ++.-...+++|+++++++|+++.   ++ .+..+.
T Consensus        40 d~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~  116 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELE  116 (260)
T ss_pred             ccccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhc
Confidence            34456666666665443321  3457888899999888433    33334455889999999988763   33 456677


Q ss_pred             CCCEEeccCCCCCCcCC-------CCCCCCCeEeccCC
Q 027793           95 RLKCLHLINCNMIRSLP-------ELPFCLNYLNTSDC  125 (219)
Q Consensus        95 ~L~~L~l~~~~~l~~lp-------~~~~~L~~L~l~~~  125 (219)
                      +|..|++.+|.-.. +-       ..+++|+.|+-.+.
T Consensus       117 nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  117 NLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             chhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence            78888888775443 22       12467777775554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.54  E-value=7.3e-05  Score=67.20  Aligned_cols=106  Identities=17%  Similarity=0.183  Sum_probs=76.7

Q ss_pred             CCCccEEEeecCCCcc--cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCE
Q 027793            1 MELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKC   75 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~   75 (219)
                      ||.|+.|.+++-.+..  +..-..++++|..||++++.+ +.+ .+++++++|++|.+.+-.+.   .-..+..+++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            5889999999865543  344456789999999999744 444 57889999999988876544   2235678999999


Q ss_pred             EEecCCcCCccc-------hhhhCCCCCCEEeccCCCCCC
Q 027793           76 LELSGHNFESLP-------TGISQLQRLKCLHLINCNMIR  108 (219)
Q Consensus        76 L~l~~n~l~~lp-------~~l~~l~~L~~L~l~~~~~l~  108 (219)
                      ||+|.......+       +.-..+++|+.||.|+.....
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            999987644222       223458899999999865433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.52  E-value=0.00025  Score=53.49  Aligned_cols=76  Identities=25%  Similarity=0.310  Sum_probs=48.0

Q ss_pred             CCCcEEecccccccccccCCCCCCCCEEEecCCcCCccchhhhC-CCCCCEEeccCCCCCCcCCCC-----CCCCCeEec
Q 027793           49 KKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQ-LQRLKCLHLINCNMIRSLPEL-----PFCLNYLNT  122 (219)
Q Consensus        49 ~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~-l~~L~~L~l~~~~~l~~lp~~-----~~~L~~L~l  122 (219)
                      .+...+|+++|.+..-..+..++.|.+|.+.+|+|+.+...+.. +++|+.|.+.+|+ +..+.+.     ++.|++|.+
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeee
Confidence            45667777777766445566777777777777777766555543 4567777777643 3333321     356777776


Q ss_pred             cCC
Q 027793          123 SDC  125 (219)
Q Consensus       123 ~~~  125 (219)
                      -+|
T Consensus       121 l~N  123 (233)
T KOG1644|consen  121 LGN  123 (233)
T ss_pred             cCC
Confidence            664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=4.2e-05  Score=60.41  Aligned_cols=95  Identities=21%  Similarity=0.215  Sum_probs=56.1

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCEEEec
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~L~l~   79 (219)
                      +.+.|+..++.+.++.- ..+++.|++|.++-|.+.+.-  .+..+++|+.|++..|.+.   --..+.++++|+.|.|.
T Consensus        20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCCccHHHH-HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            45566667777666543 456777777777777544433  2556777777777777655   12345666777777777


Q ss_pred             CCcCC--ccc----hhhhCCCCCCEEe
Q 027793           80 GHNFE--SLP----TGISQLQRLKCLH  100 (219)
Q Consensus        80 ~n~l~--~lp----~~l~~l~~L~~L~  100 (219)
                      .|...  .-+    ..+.-+++|+.||
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            76632  211    1234455666554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=4.8e-05  Score=60.11  Aligned_cols=97  Identities=24%  Similarity=0.173  Sum_probs=75.9

Q ss_pred             CCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCcCCccch--hhhCCCCCCEEe
Q 027793           23 HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPT--GISQLQRLKCLH  100 (219)
Q Consensus        23 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~  100 (219)
                      .+.+.+.|+..||.+.. +. ...+|+.|++|.++-|.+.--..+..|++|+.|.|..|.|.++.+  -+.++++|+.|.
T Consensus        17 dl~~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHHhhhhcccCCCccH-HH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            35677888888885433 32 355899999999999998755667889999999999999987764  468999999999


Q ss_pred             ccCCCCCCcCCCC--------CCCCCeEe
Q 027793          101 LINCNMIRSLPEL--------PFCLNYLN  121 (219)
Q Consensus       101 l~~~~~l~~lp~~--------~~~L~~L~  121 (219)
                      +..|.-.+.-+..        +++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            9998776655532        46777776

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.84  E-value=0.00035  Score=33.31  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=13.3

Q ss_pred             CccEEEeecCCCcccCccccC
Q 027793            3 LLQEIDLFLSGIKELPSSIEH   23 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~   23 (219)
                      +|++|++++|.++.+|++|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            466777777776666665443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.81  E-value=0.00052  Score=32.67  Aligned_cols=21  Identities=43%  Similarity=0.800  Sum_probs=14.3

Q ss_pred             CCCEEEecCCcCCccchhhhC
Q 027793           72 SLKCLELSGHNFESLPTGISQ   92 (219)
Q Consensus        72 ~L~~L~l~~n~l~~lp~~l~~   92 (219)
                      +|++|++++|.++.+|.++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467777777777777766543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.00041  Score=55.47  Aligned_cols=80  Identities=23%  Similarity=0.225  Sum_probs=44.2

Q ss_pred             CccEEEeecCCCcccCc---cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCEE
Q 027793            3 LLQEIDLFLSGIKELPS---SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKCL   76 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~---~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~L   76 (219)
                      .++.+|+.+|.|+++.+   .+.+++.|++|+++.|.....+...-....+|++|.+.+....   ....+..+|.++.|
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel  151 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL  151 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence            45667777777766443   2456777777777776543322111023456666666665543   22234455556666


Q ss_pred             EecCCc
Q 027793           77 ELSGHN   82 (219)
Q Consensus        77 ~l~~n~   82 (219)
                      +++.|+
T Consensus       152 HmS~N~  157 (418)
T KOG2982|consen  152 HMSDNS  157 (418)
T ss_pred             hhccch
Confidence            666553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.72  E-value=0.00098  Score=52.12  Aligned_cols=99  Identities=26%  Similarity=0.241  Sum_probs=51.4

Q ss_pred             ccEEEeecCCCcccCccccCCCCCcEEeccCC--CCCCCCccccCCCCCCcEEeccccccccccc---CCCCCCCCEEEe
Q 027793            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRCLILSG---LSSLSSLKCLEL   78 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~---~~~l~~L~~L~l   78 (219)
                      |+.+++.+..++.+-. +..+++|+.|.++.|  +..+.++--...+++|+++++++|++.++..   +..+.+|..|++
T Consensus        45 le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl  123 (260)
T KOG2739|consen   45 LELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDL  123 (260)
T ss_pred             hhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhc
Confidence            3344444444333222 344666677777666  4444444444455677777777776653332   334455666666


Q ss_pred             cCCcCCccc----hhhhCCCCCCEEeccC
Q 027793           79 SGHNFESLP----TGISQLQRLKCLHLIN  103 (219)
Q Consensus        79 ~~n~l~~lp----~~l~~l~~L~~L~l~~  103 (219)
                      .+|..+.+-    ..+.-+++|++|+-..
T Consensus       124 ~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  124 FNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             ccCCccccccHHHHHHHHhhhhccccccc
Confidence            666654332    1234456666665443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.56  E-value=8.7e-05  Score=61.55  Aligned_cols=184  Identities=18%  Similarity=0.127  Sum_probs=103.7

Q ss_pred             CCCcEEeccCCCCCCCC--ccccCCCCCCcEEeccccccc----ccccCCCCCCCCEEEecCCc-CC--ccchhhhCCCC
Q 027793           25 EGLKCLRLNSCTKLGFL--PESLCNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGHN-FE--SLPTGISQLQR   95 (219)
Q Consensus        25 ~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n~-l~--~lp~~l~~l~~   95 (219)
                      ..|+.|.++||.-.+.-  -.....++++++|.+.+|...    .-..-..+++|+++++..|. ++  .+......+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            35778888887654432  223446788888888888754    12223457788888888865 55  22223456788


Q ss_pred             CCEEeccCCCCCCc-----CCCCCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcCCcccccccccc
Q 027793           96 LKCLHLINCNMIRS-----LPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERN  170 (219)
Q Consensus        96 L~~L~l~~~~~l~~-----lp~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~  170 (219)
                      |++++++.|..+..     +-.....++.+...||..++.-.  +...       ..-+..+..+++..|..+++.....
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~--l~~~-------~~~~~~i~~lnl~~c~~lTD~~~~~  288 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA--LLKA-------AAYCLEILKLNLQHCNQLTDEDLWL  288 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH--HHHH-------hccChHhhccchhhhccccchHHHH
Confidence            88888888876554     11122345555555655433211  0000       1112234466677887777765333


Q ss_pred             hh---HhHHHHHhhhCCCcccccccceeccCeeeeeeEEeeceeecCCCC
Q 027793          171 FF---ANFQRRVHNALPGILHRKVDRKLIDGVESAFVYVEVGFHTAGSGL  217 (219)
Q Consensus       171 ~~---~~~~~~~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (219)
                      +-   ..+|.+....+-...+..+.+.......+++.++..|.+=..+|+
T Consensus       289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~f  338 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGF  338 (483)
T ss_pred             HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhh
Confidence            33   334445444455545555555555567777777777765544443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.38  E-value=0.0051  Score=48.85  Aligned_cols=41  Identities=17%  Similarity=0.059  Sum_probs=24.7

Q ss_pred             cCCCCCcEEeccCCCCCCCCcc----ccCCCCCCcEEeccccccc
Q 027793           22 EHIEGLKCLRLNSCTKLGFLPE----SLCNLKKLQKLCLSQCRCL   62 (219)
Q Consensus        22 ~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~l~~~~~~   62 (219)
                      -++++|+..++++|.+....|+    .+++-+.|.+|.+++|..-
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            4566777777777655544443    3445566777777766543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.0046  Score=49.70  Aligned_cols=131  Identities=18%  Similarity=0.126  Sum_probs=76.2

Q ss_pred             CCCccEEEeecCCCcccCccc-cCCCCCcEEeccCCCCCC-CCccccCCCCCCcEEeccccccc---cc----c------
Q 027793            1 MELLQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLG-FLPESLCNLKKLQKLCLSQCRCL---IL----S------   65 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~---~p----~------   65 (219)
                      |+.|++|+++.|.+...-... ..+.+|++|-+.+....- .....+..+|.++.|.++.|...   +.    +      
T Consensus        96 lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v  175 (418)
T KOG2982|consen   96 LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEV  175 (418)
T ss_pred             CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhh
Confidence            678999999999876522222 356789999998765432 23334567888888888888543   00    0      


Q ss_pred             ------------------cCCCCCCCCEEEecCCcCCccc--hhhhCCCCCCEEeccCCCCCCcCCC-----CCCCCCeE
Q 027793           66 ------------------GLSSLSSLKCLELSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYL  120 (219)
Q Consensus        66 ------------------~~~~l~~L~~L~l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~-----~~~~L~~L  120 (219)
                                        --.-++++..+.+..|++.+..  ......+.+-.|+++.+ .+.+...     .++.|..|
T Consensus       176 ~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dl  254 (418)
T KOG2982|consen  176 LTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDL  254 (418)
T ss_pred             hhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhhee
Confidence                              0011355555556666554332  23334555556666653 2333321     24677777


Q ss_pred             eccCCcCCCcCC
Q 027793          121 NTSDCKRLQSLP  132 (219)
Q Consensus       121 ~l~~~~~l~~lp  132 (219)
                      .+..++....+.
T Consensus       255 Rv~~~Pl~d~l~  266 (418)
T KOG2982|consen  255 RVSENPLSDPLR  266 (418)
T ss_pred             eccCCccccccc
Confidence            777766555443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.16  E-value=0.0041  Score=27.54  Aligned_cols=16  Identities=44%  Similarity=0.783  Sum_probs=7.2

Q ss_pred             CCCEEEecCCcCCccc
Q 027793           72 SLKCLELSGHNFESLP   87 (219)
Q Consensus        72 ~L~~L~l~~n~l~~lp   87 (219)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666665554

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.12  E-value=0.0012  Score=56.77  Aligned_cols=105  Identities=32%  Similarity=0.395  Sum_probs=50.7

Q ss_pred             CCCCcEEeccCCCCCCC--CccccCCCCCCcEEecccc-ccc------ccccCCCCCCCCEEEecCCc-CCc--cchhhh
Q 027793           24 IEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQC-RCL------ILSGLSSLSSLKCLELSGHN-FES--LPTGIS   91 (219)
Q Consensus        24 l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~-~~~------~p~~~~~l~~L~~L~l~~n~-l~~--lp~~l~   91 (219)
                      .+.|+.+.+.+|.....  +-.....++.|+.|+++++ ...      .......+.+|+.++++++. ++.  +.....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45566666666544443  2233445666666666652 111      11223344566666666665 441  221122


Q ss_pred             CCCCCCEEeccCCCCCCc-----CCCCCCCCCeEeccCCcCC
Q 027793           92 QLQRLKCLHLINCNMIRS-----LPELPFCLNYLNTSDCKRL  128 (219)
Q Consensus        92 ~l~~L~~L~l~~~~~l~~-----lp~~~~~L~~L~l~~~~~l  128 (219)
                      .+++|+.|.+.+|..++.     +....+.|++|++++|..+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            356666666555543221     1122345666666666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.93  E-value=0.0045  Score=27.41  Aligned_cols=17  Identities=29%  Similarity=0.436  Sum_probs=7.9

Q ss_pred             CCccEEEeecCCCcccC
Q 027793            2 ELLQEIDLFLSGIKELP   18 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp   18 (219)
                      ++|+.|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35666666666665554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.18  E-value=0.11  Score=36.21  Aligned_cols=81  Identities=15%  Similarity=0.207  Sum_probs=31.6

Q ss_pred             ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc-ccCCCCCCCCEEEecCCcCCccch-hhhCCCCCCE
Q 027793           21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELSGHNFESLPT-GISQLQRLKC   98 (219)
Q Consensus        21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~   98 (219)
                      |...++|+.+.+... ....-...+..+++|+.+.+..+-..++ ..+.++++++.+.+.+ .+..++. .+..+++++.
T Consensus         8 F~~~~~l~~i~~~~~-~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen    8 FYNCSNLESITFPNT-IKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             TTT-TT--EEEETST---EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             HhCCCCCCEEEECCC-eeEeChhhcccccccccccccccccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            444555555555431 2222222444555566665555321122 2344555566666644 3333322 3444566666


Q ss_pred             EeccC
Q 027793           99 LHLIN  103 (219)
Q Consensus        99 L~l~~  103 (219)
                      +++..
T Consensus        86 i~~~~   90 (129)
T PF13306_consen   86 IDIPS   90 (129)
T ss_dssp             EEETT
T ss_pred             cccCc
Confidence            66643

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.09  E-value=0.0066  Score=50.74  Aligned_cols=107  Identities=23%  Similarity=0.272  Sum_probs=62.0

Q ss_pred             CCCCcEEeccCCCCCCCCcc-cc-CCCCCCcEEeccccccc----ccccCCCCCCCCEEEecCCcCC---ccchhhhCCC
Q 027793           24 IEGLKCLRLNSCTKLGFLPE-SL-CNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGHNFE---SLPTGISQLQ   94 (219)
Q Consensus        24 l~~L~~L~l~~~~~~~~~p~-~~-~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n~l~---~lp~~l~~l~   94 (219)
                      +..|++++.++|...+..+- .+ .+..+|+.+.++.|+..    +..--.+++.|+.+++.++...   ++-..-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            45667777776655443221 12 24567777777777633    1112235667777777777632   2433345677


Q ss_pred             CCCEEeccCCCCCCcC-----C---CCCCCCCeEeccCCcCCCc
Q 027793           95 RLKCLHLINCNMIRSL-----P---ELPFCLNYLNTSDCKRLQS  130 (219)
Q Consensus        95 ~L~~L~l~~~~~l~~l-----p---~~~~~L~~L~l~~~~~l~~  130 (219)
                      .|+.+.+++|..++.-     .   .....|+.+.+++|+.+++
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d  416 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD  416 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence            7888888877655433     1   1234667777777776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.63  E-value=0.024  Score=27.87  Aligned_cols=20  Identities=30%  Similarity=0.493  Sum_probs=15.5

Q ss_pred             CCCccEEEeecCCCcccCcc
Q 027793            1 MELLQEIDLFLSGIKELPSS   20 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~   20 (219)
                      |++|++|++++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            56788888888888887765

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.63  E-value=0.024  Score=27.87  Aligned_cols=20  Identities=30%  Similarity=0.493  Sum_probs=15.5

Q ss_pred             CCCccEEEeecCCCcccCcc
Q 027793            1 MELLQEIDLFLSGIKELPSS   20 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~   20 (219)
                      |++|++|++++|.|+.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            56788888888888887765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.56  E-value=0.016  Score=49.80  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=16.7

Q ss_pred             CCCCCEEEecCCc-CC--ccchhhhCCCCCCEEeccCCCC
Q 027793           70 LSSLKCLELSGHN-FE--SLPTGISQLQRLKCLHLINCNM  106 (219)
Q Consensus        70 l~~L~~L~l~~n~-l~--~lp~~l~~l~~L~~L~l~~~~~  106 (219)
                      +++|+.|.+.+|. ++  .+-.....++.|++|++++|..
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            4455555544444 33  2222334444555555554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.50  E-value=0.041  Score=27.01  Aligned_cols=21  Identities=43%  Similarity=0.732  Sum_probs=15.7

Q ss_pred             CCCCCEEEecCCcCCccchhh
Q 027793           70 LSSLKCLELSGHNFESLPTGI   90 (219)
Q Consensus        70 l~~L~~L~l~~n~l~~lp~~l   90 (219)
                      +++|++|++++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            457788888888888887654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.50  E-value=0.041  Score=27.01  Aligned_cols=21  Identities=43%  Similarity=0.732  Sum_probs=15.7

Q ss_pred             CCCCCEEEecCCcCCccchhh
Q 027793           70 LSSLKCLELSGHNFESLPTGI   90 (219)
Q Consensus        70 l~~L~~L~l~~n~l~~lp~~l   90 (219)
                      +++|++|++++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            457788888888888887654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.14  E-value=0.011  Score=44.74  Aligned_cols=77  Identities=23%  Similarity=0.322  Sum_probs=34.5

Q ss_pred             CcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc---ccC-CCCCCCCEEEecCCc-CC-ccchhhhCCCCCCEEe
Q 027793           27 LKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL---SGL-SSLSSLKCLELSGHN-FE-SLPTGISQLQRLKCLH  100 (219)
Q Consensus        27 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p---~~~-~~l~~L~~L~l~~n~-l~-~lp~~l~~l~~L~~L~  100 (219)
                      ++.++-+++.+...--+.+..+++++.|.+.+|.....   +.+ +-.++|+.|++++|. |+ .--..+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            44555554433333223344555555555555543300   001 123455555555554 44 2223445555555555


Q ss_pred             ccC
Q 027793          101 LIN  103 (219)
Q Consensus       101 l~~  103 (219)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.94  E-value=0.21  Score=40.03  Aligned_cols=82  Identities=26%  Similarity=0.269  Sum_probs=47.1

Q ss_pred             CCccEEEeecCCCcc-----cCccccCCCCCcEEeccCCCCCCC----Cc-------cccCCCCCCcEEeccccccc--c
Q 027793            2 ELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKLGF----LP-------ESLCNLKKLQKLCLSQCRCL--I   63 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~----~p-------~~~~~l~~L~~L~l~~~~~~--~   63 (219)
                      ..++.+++++|.|..     +...+.+-.+|+..++++- +.+.    ++       +.+-+||+|+..++|+|.+.  .
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            456677777776654     2223445566666666652 3332    12       24456777777777777654  2


Q ss_pred             c----ccCCCCCCCCEEEecCCcCC
Q 027793           64 L----SGLSSLSSLKCLELSGHNFE   84 (219)
Q Consensus        64 p----~~~~~l~~L~~L~l~~n~l~   84 (219)
                      |    +.++.-+.|.+|.+++|.+.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCC
Confidence            2    23455566777777777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.93  E-value=0.21  Score=34.70  Aligned_cols=98  Identities=16%  Similarity=0.233  Sum_probs=57.3

Q ss_pred             CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc-ccCCCCCCCCEEEec
Q 027793            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELS   79 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p-~~~~~l~~L~~L~l~   79 (219)
                      ++|+.+.+.. .++.++.. |..+++|+.+.+.++ ....-...+..+++++.+.+..+...++ ..+..+++++.+++.
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEET
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccccC
Confidence            4688888874 57777665 788889999999874 4443344677888999999976433333 456779999999997


Q ss_pred             CCcCCccch-hhhCCCCCCEEeccC
Q 027793           80 GHNFESLPT-GISQLQRLKCLHLIN  103 (219)
Q Consensus        80 ~n~l~~lp~-~l~~l~~L~~L~l~~  103 (219)
                      .+ +..++. .+.++ .++.+.+..
T Consensus        90 ~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   90 SN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cc-ccEEchhhhcCC-CceEEEECC
Confidence            65 665544 45666 888888764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.09  E-value=0.0029  Score=49.04  Aligned_cols=84  Identities=17%  Similarity=0.101  Sum_probs=54.4

Q ss_pred             ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEE
Q 027793           21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCL   99 (219)
Q Consensus        21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L   99 (219)
                      +......+.||++.|+ ...+...++.++.+..|+++.|.+. +|..++....+..+++..|..+..|-+++..+.++++
T Consensus        38 i~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             hhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence            4555666677777663 2333345555666777777766655 6666666666677777777777777777777777777


Q ss_pred             eccCCC
Q 027793          100 HLINCN  105 (219)
Q Consensus       100 ~l~~~~  105 (219)
                      +.-++.
T Consensus       117 e~k~~~  122 (326)
T KOG0473|consen  117 EQKKTE  122 (326)
T ss_pred             hhccCc
Confidence            766654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.75  E-value=0.097  Score=39.80  Aligned_cols=61  Identities=23%  Similarity=0.353  Sum_probs=40.7

Q ss_pred             CCCEEEecCCcCC-ccchhhhCCCCCCEEeccCCCCCC-----cCCCCCCCCCeEeccCCcCCCcCC
Q 027793           72 SLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIR-----SLPELPFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        72 ~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~-----~lp~~~~~L~~L~l~~~~~l~~lp  132 (219)
                      .++.+|.+++.|. .--.-+.++++++.|.+.+|....     .+....++|+.|++++|+.+++-.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G  168 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG  168 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence            4667777777765 333456777788888888776554     233345778888888887777643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.38  E-value=0.004  Score=48.30  Aligned_cols=57  Identities=25%  Similarity=0.253  Sum_probs=26.7

Q ss_pred             CCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEeccC
Q 027793           47 NLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLIN  103 (219)
Q Consensus        47 ~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~  103 (219)
                      .+.....||++.|+.. +-..++-++.+..|+++.|.+..+|..++....++.++...
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~   97 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK   97 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc
Confidence            3444445555554433 22233334444555555555555555555544454444443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=89.22  E-value=0.29  Score=24.16  Aligned_cols=17  Identities=35%  Similarity=0.532  Sum_probs=11.8

Q ss_pred             CCCccEEEeecCCCccc
Q 027793            1 MELLQEIDLFLSGIKEL   17 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~l   17 (219)
                      +++|++|++++|+|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            45777777777777554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=89.08  E-value=0.25  Score=24.39  Aligned_cols=18  Identities=44%  Similarity=0.623  Sum_probs=12.5

Q ss_pred             CCCCEEEecCCcCCccch
Q 027793           71 SSLKCLELSGHNFESLPT   88 (219)
Q Consensus        71 ~~L~~L~l~~n~l~~lp~   88 (219)
                      .+|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            356777777777777774

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.92  E-value=0.33  Score=23.13  Aligned_cols=14  Identities=29%  Similarity=0.527  Sum_probs=6.7

Q ss_pred             CCCCEEEecCCcCC
Q 027793           71 SSLKCLELSGHNFE   84 (219)
Q Consensus        71 ~~L~~L~l~~n~l~   84 (219)
                      ++|++|++++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45556666665554

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=80.27  E-value=1.3  Score=21.53  Aligned_cols=12  Identities=33%  Similarity=0.653  Sum_probs=5.1

Q ss_pred             CCeEeccCCcCC
Q 027793          117 LNYLNTSDCKRL  128 (219)
Q Consensus       117 L~~L~l~~~~~l  128 (219)
                      |++|++++|..+
T Consensus         4 L~~L~l~~C~~i   15 (26)
T smart00367        4 LRELDLSGCTNI   15 (26)
T ss_pred             CCEeCCCCCCCc
Confidence            444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.7 bits (205), Expect = 5e-19
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 15/144 (10%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCN---------LKKLQKL 54
           L+ + L  + ++ LP+SI  +  L+ L + +C +L  LPE L +         L  LQ L
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 55  CLSQCRCLIL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE- 112
            L       L + +++L +LK L++      +L   I  L +L+ L L  C  +R+ P  
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 113 ---LPFCLNYLNTSDCKRLQSLPK 133
                  L  L   DC  L +LP 
Sbjct: 249 FGGRA-PLKRLILKDCSNLLTLPL 271

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.8 bits (195), Expect = 1e-17
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 4   LQEIDLF-LSGIKELPSSI------EHIEGLKCLR-LN-SCTKLGFLPESLCNLKKLQKL 54
           L+E+ +     + ELP  +         +GL  L+ L    T +  LP S+ NL+ L+ L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 55  CLSQCRCLIL-SGLSSLSSLKCLELSGHN-FESLPTGISQLQRLKCLHLINCNMIRSLPE 112
            +       L   +  L  L+ L+L G     + P        LK L L +C+ + +LP 
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 113 ----LPFCLNYLNTSDCKRLQSLPK 133
               L   L  L+   C  L  LP 
Sbjct: 272 DIHRLT-QLEKLDLRGCVNLSRLPS 295

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.4 bits (181), Expect = 9e-16
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 3/134 (2%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLN-SCTKLGFLPESLCNLKKLQKLCLSQC 59
               Q        +K     +E       + L      L   P+    L  LQ + +   
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA 114

Query: 60  RCLIL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP-ELPFCL 117
             + L   +   + L+ L L+ +   +LP  I+ L RL+ L +  C  +  LP  L    
Sbjct: 115 GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 118 NYLNTSDCKRLQSL 131
                     LQSL
Sbjct: 175 ASGEHQGLVNLQSL 188

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 3/115 (2%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ + +  S +  L  +I H+  L+ L L  CT L   P        L++L L  C  L+
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 64  L--SGLSSLSSLKCLELSG-HNFESLPTGISQLQRLKCLHLINCNMIRSLPELPF 115
                +  L+ L+ L+L G  N   LP+ I+QL     + +      +     P 
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 27/154 (17%), Positives = 42/154 (27%), Gaps = 31/154 (20%)

Query: 9   LFLSGIKELPSSIEHIEGLKCLR----------------------LNSCTKLGFLPESL- 45
           L+  G   L    + +   +                           +   L    + L 
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76

Query: 46  -CNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLIN 103
                    L L              LS L+ + +       LP  + Q   L+ L L  
Sbjct: 77  DATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTL-A 135

Query: 104 CNMIRSLPE----LPFCLNYLNTSDCKRLQSLPK 133
            N +R+LP     L   L  L+   C  L  LP+
Sbjct: 136 RNPLRALPASIASLN-RLRELSIRACPELTELPE 168

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 30/141 (21%)

Query: 20  SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR--------------CLILS 65
              H  G + L     T L    + L   ++      ++                     
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 66  GLSSL---------SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPE---- 112
            L +               LEL        P    +L  L+ + + +   +  LP+    
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI-DAAGLMELPDTMQQ 125

Query: 113 LPFCLNYLNTSDCKRLQSLPK 133
               L  L  +    L++LP 
Sbjct: 126 FA-GLETLTLARNP-LRALPA 144

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 7e-14
 Identities = 23/148 (15%), Positives = 56/148 (37%), Gaps = 17/148 (11%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           ++       +    +    S  +++ L  + L +C  +  LP+ L +L +LQ L ++  R
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 61  -----------CLILSGLSSLSSLKCLELSGHNFESLP--TGISQLQRLKCLHLINCNMI 107
                        +     +   ++   +  +N E  P    + ++ +L  L  ++ N +
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NKV 585

Query: 108 RSLPELPFC--LNYLNTSDCKRLQSLPK 133
           R L        L  L      +++ +P+
Sbjct: 586 RHLEAFGTNVKLTDLKLDYN-QIEEIPE 612

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 14/144 (9%)

Query: 4   LQEIDLFLSGIKELPSSIEH--IEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC 61
           L  IDL  + +  L        +  L  + ++        P    N  +L+   +   R 
Sbjct: 730 LTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRD 788

Query: 62  L--------ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL 113
                      +G+++  SL  L++  ++   +   +    +L  L + + N   S+   
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIAD-NPNISIDVT 845

Query: 114 PFCLNYLNTSDCKRLQSLPKISSC 137
             C                 I  C
Sbjct: 846 SVCPYIEAGMYVLLYDKTQDIRGC 869

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 29/153 (18%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSC-------TKLGFLPESLCNLKKLQKLC 55
              + L  + I++ P+ +      +  + L++          L     +  N   L  + 
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734

Query: 56  LSQCRCLILSGL------SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHL------IN 103
           L   +   L+ L      ++L  L  +++S + F S PT      +LK   +        
Sbjct: 735 LRFNK---LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 104 CNMIRSLPELPFC----LNYLNTSDCKRLQSLP 132
             ++R  P         L  L       ++ + 
Sbjct: 792 NRILRQWPTG-ITTCPSLIQLQIGSN-DIRKVD 822

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 4/136 (2%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLR--LNSCTKLGFLP-ESLCNLKKLQKLCLS 57
           M   ++  + +   K      + +     L+  +N   ++  +  +S  +LK  Q   L+
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 58  QCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
                I   +  L+ L+ +  +   F      +              N   S   L   L
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DL 493

Query: 118 NYLNTSDCKRLQSLPK 133
             +   +C  +  LP 
Sbjct: 494 TDVELYNCPNMTQLPD 509

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 24/147 (16%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQCRCL 62
           L  +D   + ++ L +       L  L+L+   ++  +PE  C    +++ L  S  +  
Sbjct: 575 LGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-- 630

Query: 63  ILSGL------SSLSSLKCLELSGHNFESLPTGIS------QLQRLKCLHLINCNMIRSL 110
            L  +       S+  +  ++ S +   S    IS      +      + L   N I+  
Sbjct: 631 -LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY-NEIQKF 688

Query: 111 PELPFC----LNYLNTSDCKRLQSLPK 133
           P   F     ++ +  S+   + S+P+
Sbjct: 689 PTELFATGSPISTIILSNN-LMTSIPE 714

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 36/137 (26%), Positives = 53/137 (38%), Gaps = 14/137 (10%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           +  + +  + +  LP+       L+ L + S  +L  LP     L +L            
Sbjct: 63  ITTLVIPDNNLTSLPALPPE---LRTLEV-SGNQLTSLPVLPPGLLELSIFSNPLTH--- 115

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTS 123
           L  L   S L  L + G+   SLP     LQ L        N + SLP LP  L  L   
Sbjct: 116 LPAL--PSGLCKLWIFGNQLTSLPVLPPGLQELSVSD----NQLASLPALPSELCKLWAY 169

Query: 124 DCKRLQSLPKISSCLET 140
           +  +L SLP + S L+ 
Sbjct: 170 NN-QLTSLPMLPSGLQE 185

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.0 bits (166), Expect = 2e-13
 Identities = 41/138 (29%), Positives = 59/138 (42%), Gaps = 16/138 (11%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L ++ +F + +  LP     ++ L      S  +L  LP     L KL            
Sbjct: 123 LCKLWIFGNQLTSLPVLPPGLQELSV----SDNQLASLPALPSELCKLWAYNNQ------ 172

Query: 64  LSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
           L+ L    S L+ L +S +   SLPT  S+L +L   +    N + SLP LP  L  L  
Sbjct: 173 LTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPSGLKELIV 228

Query: 123 SDCKRLQSLPKISSCLET 140
           S   RL SLP + S L+ 
Sbjct: 229 SGN-RLTSLPVLPSELKE 245

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 66.8 bits (163), Expect = 3e-13
 Identities = 39/169 (23%), Positives = 59/169 (34%), Gaps = 39/169 (23%)

Query: 4   LQEIDLFLSGIKELPSSI------------------EHIEGLKCLRLNSCTKLGFLPESL 45
              +++  SG+  LP  +                       L+ L + S  +L  LP   
Sbjct: 42  NAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEV-SGNQLTSLPVLP 100

Query: 46  CNLKKLQKLCLS---------QCRCLILSGL------SSLSSLKCLELSGHNFESLPTGI 90
             L +L                   L + G            L+ L +S +   SLP   
Sbjct: 101 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALP 160

Query: 91  SQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLE 139
           S+L +L   +    N + SLP LP  L  L+ SD  +L SLP + S L 
Sbjct: 161 SELCKLWAYN----NQLTSLPMLPSGLQELSVSDN-QLASLPTLPSELY 204

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 24/132 (18%)

Query: 26  GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGL-SSLSSLKCLELSGHNFE 84
           G   L +   + L  LP+ L     +  L +       L+ L +    L+ LE+SG+   
Sbjct: 41  GNAVLNV-GESGLTTLPDCL--PAHITTLVIPDNN---LTSLPALPPELRTLEVSGNQLT 94

Query: 85  SLPTGISQLQRLKCLHL----------------INCNMIRSLPELPFCLNYLNTSDCKRL 128
           SLP     L  L                     I  N + SLP LP  L  L+ SD  +L
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QL 153

Query: 129 QSLPKISSCLET 140
            SLP + S L  
Sbjct: 154 ASLPALPSELCK 165

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 30/166 (18%), Positives = 52/166 (31%), Gaps = 33/166 (19%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLK-------------- 49
           LQE+ +  + +  LP+    +  L         +L  LP     LK              
Sbjct: 183 LQELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLPALPSGLKELIVSGNRLTSLPV 238

Query: 50  ---KLQKLCLSQCRCLILSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN 105
              +L++L +S  R   L+ L    S L  L +  +    LP  +  L     ++L   N
Sbjct: 239 LPSELKELMVSGNR---LTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG-N 294

Query: 106 MIRSLP-----ELPFCLNYLN--TSDCKRLQSLPKISSCLETPSNQ 144
            +         E+     Y            S P+ +  L   +  
Sbjct: 295 PLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAAD 340

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 63.1 bits (153), Expect = 6e-12
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 16/130 (12%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           +  +++  + +  LP     +E L         +L  LPE   +LK L    +   +   
Sbjct: 82  ITVLEITQNALISLPELPASLEYLDA----CDNRLSTLPELPASLKHLD---VDNNQ--- 131

Query: 64  LSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
           L+ L    + L+ +    +    LP   + L+ L   +    N +  LPELP  L  L+ 
Sbjct: 132 LTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRN----NQLTFLPELPESLEALDV 187

Query: 123 SDCKRLQSLP 132
           S    L+SLP
Sbjct: 188 STN-LLESLP 196

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.4 bits (141), Expect = 2e-10
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 14/140 (10%)

Query: 4   LQEIDLFLSGIKELPSSIEHI--EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC 61
            ++  L      E  S ++         L+L +   L  LP++L    ++  L ++Q   
Sbjct: 36  WEKQALPGENRNEAVSLLKECLINQFSELQL-NRLNLSSLPDNLP--PQITVLEITQNA- 91

Query: 62  LILSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
             L  L    +SL+ L+   +   +LP   + L+ L   +    N +  LPELP  L Y+
Sbjct: 92  --LISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDN----NQLTMLPELPALLEYI 145

Query: 121 NTSDCKRLQSLPKISSCLET 140
           N  +  +L  LP++ + LE 
Sbjct: 146 NADNN-QLTMLPELPTSLEV 164

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 16/143 (11%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ +D+  + +  LP        L+ +  ++  +L  LPE   +L   + L +   +   
Sbjct: 122 LKHLDVDNNQLTMLPELPAL---LEYINADN-NQLTMLPELPTSL---EVLSVRNNQ--- 171

Query: 64  LSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLI---NCNMIRSLPELPFCLNY 119
           L+ L     SL+ L++S +  ESLP    +    +   +      N I  +PE    L+ 
Sbjct: 172 LTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDP 231

Query: 120 LNTSDCK--RLQSLPKISSCLET 140
             T   +   L S  + S   +T
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 13/144 (9%)

Query: 3   LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-- 60
           LL+ I+   + +  LP        L+ L + +  +L FLPE   +L+ L    +S     
Sbjct: 141 LLEYINADNNQLTMLPELPTS---LEVLSVRNN-QLTFLPELPESLEALD---VSTNLLE 193

Query: 61  ---CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
               + +    S  +        +    +P  I  L     + L + N + S        
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED-NPLSSRIRESLSQ 252

Query: 118 NYLNTSDCKRLQSLPKISSCLETP 141
                                 T 
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 41  LPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLH 100
              +    +K      ++   + L     ++    L+L+  N  SLP  +    ++  L 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL--PPQITVLE 86

Query: 101 LINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLE 139
           +   N + SLPELP  L YL+  D  RL +LP++ + L+
Sbjct: 87  I-TQNALISLPELPASLEYLDACDN-RLSTLPELPASLK 123

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 61.3 bits (148), Expect = 3e-11
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           + +I    S IK +   I+++  +  L LN   KL  + + L NLK L  L L + +   
Sbjct: 45  IDQIIANNSDIKSV-QGIQYLPNVTKLFLNG-NKLTDI-KPLTNLKNLGWLFLDENKIKD 101

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           LS L  L  LK L L  +    +  G+  L +L+ L+L   N I  +  L     L+ L+
Sbjct: 102 LSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYL-GNNKITDITVLSRLTKLDTLS 159

Query: 122 TSDCKRLQSLPKISSC 137
             D + +  +  ++  
Sbjct: 160 LEDNQ-ISDIVPLAGL 174

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 5e-08
 Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 17/203 (8%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
           L+ + L  +GI ++ + + H+  L+ L L +   T +      L  L KL  L L   + 
Sbjct: 111 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQI 165

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLN 121
             +  L+ L+ L+ L LS ++   L   ++ L+ L  L L +   +         L   N
Sbjct: 166 SDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 224

Query: 122 T---SDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRR 178
           T   +D   L +   IS   +      + +  LP     V+ +     T     A F  R
Sbjct: 225 TVKNTDGS-LVTPEIISDDGDYEKPNVKWH--LPEFTNEVSFIFYQPVTIGKAKARFHGR 281

Query: 179 VHNALPGILHRKVDRKLIDGVES 201
           V   L  +     D   +DG   
Sbjct: 282 VTQPLKEVYTVSYD---VDGTVI 301

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 6e-08
 Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 26/129 (20%)

Query: 14  IKEL---PSSIEHIEGLK--------CLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           + E     + I+ I             L+  S T       +   L  + ++  +     
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDA----VTQNELNSIDQIIANNSDIK 56

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
            + G+  L ++  L L+G+    +   ++ L+ L  L L   N I+ L  L         
Sbjct: 57  SVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDE-NKIKDLSSL--------- 105

Query: 123 SDCKRLQSL 131
            D K+L+SL
Sbjct: 106 KDLKKLKSL 114

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 15/139 (10%)

Query: 9   LFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-------- 60
            +    K      ++++ L  + + +C  L  LP  L  L ++Q + ++  R        
Sbjct: 233 EYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292

Query: 61  --CLILSGLSSLSSLKCLELSGHNFESL--PTGISQLQRLKCLHLINCNMIRSLPELPFC 116
                L+       ++ + +  +N ++    T + ++++L  L  +   +   LP     
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE 352

Query: 117 --LNYLNTSDCKRLQSLPK 133
             L  LN +   ++  +P 
Sbjct: 353 IKLASLNLAYN-QITEIPA 370

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 16/130 (12%), Positives = 44/130 (33%), Gaps = 6/130 (4%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
             +I    + I  +  ++  +  L+   + +   +          +  +     +     
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK---TE 241

Query: 64  LSGLSSLSSLKCLELSGHNF-ESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL-N 121
                +L  L  +E+        LPT +  L  ++ +++  CN   S  +L      L +
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV-ACNRGISGEQLKDDWQALAD 300

Query: 122 TSDCKRLQSL 131
               +++Q +
Sbjct: 301 APVGEKIQII 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 33/156 (21%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSC-------TKLGFLPESLCNLKKLQK 53
           +  I+L    +S              L  + L            L    E+  N   L  
Sbjct: 435 VSSINLSNNQISKF--PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 54  LCLSQCRCLILSGL------SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINC--- 104
           + L   +   L+ L      ++L  L  ++LS ++F   PT       LK   + N    
Sbjct: 493 IDLRFNK---LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

Query: 105 ---NMIRSLPE----LPFCLNYLNTSDCKRLQSLPK 133
                +R  PE     P  L  L       ++ + +
Sbjct: 550 QGNRTLREWPEGITLCPS-LTQLQIGSN-DIRKVNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 27/144 (18%)

Query: 4   LQEIDL---------FLSGIKELPSSIEHIEGLKCLRLNSCTKL--GFLPESLCNLKKLQ 52
           +Q I++          L    +  +     E ++ + +     L    +  SL  +KKL 
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLG 333

Query: 53  KLCLSQCRCLILSG----LSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMI 107
            L     +   L G      S   L  L L+ +    +P       ++++ L   + N +
Sbjct: 334 MLECLYNQ---LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH-NKL 389

Query: 108 RSLPELPFCLNYLNTSDCKRLQSL 131
           + +P +    +         + ++
Sbjct: 390 KYIPNIFDAKS------VSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 18/154 (11%), Positives = 43/154 (27%), Gaps = 26/154 (16%)

Query: 4   LQEIDLFLSGIKELPSSIEH--IEGLKCLRLN-------SCTKLGFLPESLCNLKKLQKL 54
           ++ +    + +K +P+  +   +  +  +  +              L  +      +  +
Sbjct: 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438

Query: 55  CLSQCR--CLILSGLSSLSSLKCLELSGHNFESLPTG--------ISQLQRLKCLHLINC 104
            LS  +         S+ S L  + L G+    +P                L  + L   
Sbjct: 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF- 497

Query: 105 NMIRSLP-ELPFC----LNYLNTSDCKRLQSLPK 133
           N +  L  +        L  ++ S        P 
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPT 530

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 9   LFLSG--IKELPSSIEHIEGLKCLRLNSCTKL------GFLPESLCNLKKLQKLCLSQCR 60
           + LS     + P+   +   LK   + +             PE +     L +L +    
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 61  CLILSGL--SSLSSLKCLELSGHNFESLP-TGISQLQRLKCLHLI 102
              +  +      ++  L++  +   S+  + +          L 
Sbjct: 578 ---IRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF 619

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 13/138 (9%), Positives = 38/138 (27%), Gaps = 11/138 (7%)

Query: 4   LQEIDL-----FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLK--KLQKLCL 56
           L+ + L      ++     P  I      +  +           +         L K C+
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 57  SQC--RCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELP 114
           +    +  I            +    +N   +   + +L +L+  ++ N   +       
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENI--C 224

Query: 115 FCLNYLNTSDCKRLQSLP 132
                 N+   ++ ++  
Sbjct: 225 EAWENENSEYAQQYKTED 242

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 31/146 (21%), Positives = 55/146 (37%), Gaps = 16/146 (10%)

Query: 3   LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC- 61
            LQE     S + E+P   E+++                P      +++    L  C   
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 62  ----LILSGLS------SLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP 111
               L L+ L           L+ L  S ++   LP     L+ L   +    N +++L 
Sbjct: 72  QAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDN----NNLKALS 127

Query: 112 ELPFCLNYLNTSDCKRLQSLPKISSC 137
           +LP  L YL  S+ + L+ LP++ + 
Sbjct: 128 DLPPLLEYLGVSNNQ-LEKLPELQNS 152

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 29/152 (19%), Positives = 60/152 (39%), Gaps = 26/152 (17%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ +    + + ELP   + ++ L     N+   L  LP  L      + L +S  +   
Sbjct: 93  LESLVASCNSLTELPELPQSLKSLLVDN-NNLKALSDLPPLL------EYLGVSNNQLEK 145

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHL------------------INCN 105
           L  L + S LK +++  ++ + LP     L+ +   +                    + N
Sbjct: 146 LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205

Query: 106 MIRSLPELPFCLNYLNTSDCKRLQSLPKISSC 137
            ++ LP+LP  L  +   +   L+ LP++ + 
Sbjct: 206 SLKKLPDLPLSLESIVAGNNI-LEELPELQNL 236

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ I    + ++ELP  ++++  L  +  ++   L  LP+   +L+ +            
Sbjct: 175 LEFIAAGNNQLEELPE-LQNLPFLTAIYADNN-SLKKLPDLPLSLESIV---AGNNILEE 229

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTS 123
           L  L +L  L  +    +  ++LP     L+ L        N +  LPELP  L +L+ S
Sbjct: 230 LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD----NYLTDLPELPQSLTFLDVS 285

Query: 124 DCKRLQSLPKISSCLET 140
           +      L ++   L  
Sbjct: 286 EN-IFSGLSELPPNLYY 301

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 17/137 (12%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L  ++   + I+ L      +E L      S  KL  LP     L   ++L  S      
Sbjct: 299 LYYLNASSNEIRSLCDLPPSLEELNV----SNNKLIELPALPPRL---ERLIASFNH--- 348

Query: 64  LSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
           L+ +     +LK L +  +     P     ++ L+       + +  +PELP  L  L+ 
Sbjct: 349 LAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRM-----NSHLAEVPELPQNLKQLHV 403

Query: 123 SDCKRLQSLPKISSCLE 139
                L+  P I   +E
Sbjct: 404 ETN-PLREFPDIPESVE 419

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 30/157 (19%), Positives = 63/157 (40%), Gaps = 24/157 (15%)

Query: 2   ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC 61
            LL+ + +  + +++LP  +++   LK + +     L  LP+   +L+ +        + 
Sbjct: 131 PLLEYLGVSNNQLEKLPE-LQNSSFLKIIDV-DNNSLKKLPDLPPSLEFIA---AGNNQL 185

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLH------------------LIN 103
             L  L +L  L  +    ++ + LP     L+ +   +                    +
Sbjct: 186 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245

Query: 104 CNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLET 140
            N++++LP+LP  L  LN  D   L  LP++   L  
Sbjct: 246 NNLLKTLPDLPPSLEALNVRDN-YLTDLPELPQSLTF 281

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 14/138 (10%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ I    + ++ELP  ++++  L  +       L  LP+   +L+ L            
Sbjct: 217 LESIVAGNNILEELPE-LQNLPFLTTIYA-DNNLLKTLPDLPPSLEALNVRDNY------ 268

Query: 64  LSGL-SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT 122
           L+ L     SL  L++S + F  L      L  L        N IRSL +LP  L  LN 
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS----NEIRSLCDLPPSLEELNV 324

Query: 123 SDCKRLQSLPKISSCLET 140
           S+ K L  LP +   LE 
Sbjct: 325 SNNK-LIELPALPPRLER 341

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ +    + + E+P   ++   LK L +     L   P+   +++ L+          +
Sbjct: 339 LERLIASFNHLAEVPELPQN---LKQLHVEYN-PLREFPDIPESVEDLR------MNSHL 388

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
                   +LK L +  +     P     ++ L+    +N   +    E     
Sbjct: 389 AEVPELPQNLKQLHVETNPLREFPDIPESVEDLR----MNSERVVDPYEFAHET 438

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 3e-10
 Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 12/134 (8%)

Query: 11  LSGIKELPSSIEHIEGLKCL--------RLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           L  +     ++++   LK +               L            ++ L L+     
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYL 120
           +L  L  L  +  L+LS +   +LP  ++ L+ L+ L   + N + ++  +     L  L
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA-SDNALENVDGVANLPRLQEL 513

Query: 121 NTSDCKRLQSLPKI 134
              + + LQ    I
Sbjct: 514 LLCNNR-LQQSAAI 526

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           +  +DL  + ++ LP ++  +  L+ L+ +    L  +   + NL +LQ+L L   R   
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG-VANLPRLQELLLCNNRLQQ 522

Query: 64  LSG---LSSLSSLKCLELSGHNFESLPTGISQLQRL 96
            +    L S   L  L L G++         +L  +
Sbjct: 523 SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 9e-10
 Identities = 30/136 (22%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           + ++ +    +  +   IE++  L+ L LN   ++  +   L NL KL  L +   +   
Sbjct: 46  ITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITD 102

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           +S L +L++L+ L L+  N   +   ++ L ++  L+L   + +  L  L     LNYL 
Sbjct: 103 ISALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161

Query: 122 TSDCKRLQSLPKISSC 137
            ++ K ++ +  I++ 
Sbjct: 162 VTESK-VKDVTPIANL 176

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 3e-09
 Identities = 24/136 (17%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+E+ L    I ++   + ++  +  L L +   L      L N+  L  L +++ +   
Sbjct: 112 LRELYLNEDNISDISP-LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD 169

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           ++ +++L+ L  L L+ +  E +   ++ L  L        N I  +  +     LN L 
Sbjct: 170 VTPIANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTA-YVNQITDITPVANMTRLNSLK 227

Query: 122 TSDCKRLQSLPKISSC 137
             +  ++  L  +++ 
Sbjct: 228 IGNN-KITDLSPLANL 242

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 20/136 (14%), Positives = 52/136 (38%), Gaps = 8/136 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
              +    + I ++      +       L   +       +   L+ + KL ++  +   
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS 58

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           + G+  L++L+ L L+G+    +   +S L +L  L++   N I  +  L     L  L 
Sbjct: 59  IQGIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGT-NKITDISALQNLTNLRELY 116

Query: 122 TSDCKRLQSLPKISSC 137
            ++   +  +  +++ 
Sbjct: 117 LNEDN-ISDISPLANL 131

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
           L  + L  + I+++ S +  +  L          T +      + N+ +L  L +   + 
Sbjct: 179 LYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDI----TPVANMTRLNSLKIGNNKI 233

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL 113
             LS L++LS L  LE+  +    +   +  L +LK L++ + N I  +  L
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGS-NQISDISVL 283

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 14/140 (10%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
           L     +++ I ++   + ++  L  L++ +   T L      L NL +L  L +   + 
Sbjct: 201 LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL----SPLANLSQLTWLEIGTNQI 255

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC----L 117
             ++ +  L+ LK L +  +    +   ++ L +L  L L N N + +           L
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNN-NQLGNEDMEVIGGLTNL 313

Query: 118 NYLNTSDCKRLQSLPKISSC 137
             L  S    +  +  ++S 
Sbjct: 314 TTLFLSQNH-ITDIRPLASL 332

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 3e-04
 Identities = 18/100 (18%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR--C 61
           L  +++  + I ++ + ++ +  LK L + S  ++  +   L NL +L  L L+  +   
Sbjct: 245 LTWLEIGTNQISDINA-VKDLTKLKMLNVGS-NQISDIS-VLNNLSQLNSLFLNNNQLGN 301

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHL 101
             +  +  L++L  L LS ++   +   ++ L ++     
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIR-PLASLSKMDSADF 340

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSCTKL-GFLPESLCNLKKLQKLCLSQC 59
           +  +DL    L     +PSS+ ++  L  L +     L G +P ++  L +L  L ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 60  RCLILSG-----LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPE 112
               +SG     LS + +L  L+ S +    +LP  IS L  L  +      +  ++P+
Sbjct: 112 N---VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.8 bits (107), Expect = 7e-06
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 18/121 (14%)

Query: 4   LQEIDLF----LSGIKELPSSIEHIEGLKCLRLNSCTKL-GFLPESLCNLKKLQKLCLSQ 58
           L  + +     L G   +P +I  +  L  L +   T + G +P+ L  +K L  L  S 
Sbjct: 78  LNFLYIGGINNLVG--PIPPAIAKLTQLHYLYITH-TNVSGAIPDFLSQIKTLVTLDFSY 134

Query: 59  CRCLILSG-----LSSLSSLKCLELSGHNFE-SLPTGISQLQRL-KCLHLINCNMIRSLP 111
                LSG     +SSL +L  +   G+    ++P       +L   + +    +   +P
Sbjct: 135 NA---LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 112 E 112
            
Sbjct: 192 P 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 6/101 (5%)

Query: 17  LPSSIEHIEGLKCLRL--NSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLS 71
           L  +      +  L L   +  K   +P SL NL  L  L +     L   I   ++ L+
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 72  SLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLP 111
            L  L ++  N   ++P  +SQ++ L  L      +  +LP
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 14/107 (13%)

Query: 3   LLQEIDL---FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQC 59
           L   + +    L+G  ++P +  ++  L  + L+     G       + K  QK+ L++ 
Sbjct: 175 LFTSMTISRNRLTG--KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 60  RCLILSG----LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHL 101
               L+     +    +L  L+L  +    +LP G++QL+ L  L++
Sbjct: 232 S---LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 9/136 (6%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRC 61
           L+E+ L  + I+ +PS     I  L+ L L    +L ++ E +   L  L+ L L+ C  
Sbjct: 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC---- 116
             +  L+ L  L  L+LSG++  ++  G    L  L+ L +   + I+ +    F     
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM-IQSQIQVIERNAFDNLQS 256

Query: 117 LNYLNTSDCKRLQSLP 132
           L  +N +    L  LP
Sbjct: 257 LVEINLAHN-NLTLLP 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 13  GIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG--LSS 69
            ++E+P  I  +   L  L  N    +     S  +L+ L+ L LS+     +     + 
Sbjct: 54  NLREVPDGISTNTRLLN-LHENQIQIIK--VNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110

Query: 70  LSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSD 124
           L++L  LEL  +   ++P G    L +LK L L N N I S+P   F     L  L+  +
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGE 169

Query: 125 CKRLQSLP 132
            KRL  + 
Sbjct: 170 LKRLSYIS 177

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 9/136 (6%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRC 61
           L+E+ L  + I+ +PS     +  L  L L    KL ++ E +   L  L+ L L  C  
Sbjct: 149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPELPFC---- 116
             +  L+ L  L+ LE+SG++F  +  G    L  LK L +   + +  +    F     
Sbjct: 209 KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV-MNSQVSLIERNAFDGLAS 267

Query: 117 LNYLNTSDCKRLQSLP 132
           L  LN +    L SLP
Sbjct: 268 LVELNLAHN-NLSSLP 282

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)

Query: 13  GIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG--LSS 69
           G+ E+P  I  +   L  L  N+   +    ++  +L  L+ L L +     +     + 
Sbjct: 65  GLSEVPQGIPSNTRYLN-LMENNIQMIQ--ADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121

Query: 70  LSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSD 124
           L+SL  LEL  +    +P+G    L +L+ L L N N I S+P   F     L  L+  +
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGE 180

Query: 125 CKRLQSLP 132
            K+L+ + 
Sbjct: 181 LKKLEYIS 188

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 23/127 (18%), Positives = 49/127 (38%), Gaps = 6/127 (4%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC-- 61
           ++++ +         + I  +  L+ LR+           +L  L  L  L +S      
Sbjct: 68  IKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNM--IRSLPELPFCLNY 119
            IL+ +++L  +  ++LS +   +    +  L  LK L++    +   R + + P  LN 
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFP-KLNQ 185

Query: 120 LNTSDCK 126
           L      
Sbjct: 186 LYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 21/142 (14%), Positives = 52/142 (36%), Gaps = 12/142 (8%)

Query: 2   ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQC 59
                ++  L        +   +  L  + L +   T L      +     ++ L ++  
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL----TGIEYAHNIKDLTINNI 76

Query: 60  RCLILSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHL----INCNMIRSLPELP 114
                + +S LS+L+ L + G +  S     +S L  L  L +     + +++  +  LP
Sbjct: 77  HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 115 FCLNYLNTSDCKRLQSLPKISS 136
             +N ++ S    +  +  + +
Sbjct: 137 -KVNSIDLSYNGAITDIMPLKT 157

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 25  EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFE 84
              K        +      +   +  L  + L+      L+G+    ++K L ++  +  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT 79

Query: 85  SLPTGISQLQRLKCLHLINCN----MIRSLPELPFCLNYLNTSDCK 126
           +    IS L  L+ L ++  +     I +L  L   L  L+ S   
Sbjct: 80  NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLDISHSA 123

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 8/136 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           + +I    S IK +   I+++  +  L L +  KL  + + L NLK L  L L + +   
Sbjct: 48  IDQIIANNSDIKSV-QGIQYLPNVTKLFL-NGNKLTDI-KPLANLKNLGWLFLDENKVKD 104

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN--MIRSLPELPFCLNYLN 121
           LS L  L  LK L L  +    +  G+  L +L+ L+L N     I  L  L   L+ L+
Sbjct: 105 LSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLT-KLDTLS 162

Query: 122 TSDCKRLQSLPKISSC 137
             D + +  +  ++  
Sbjct: 163 LEDNQ-ISDIVPLAGL 177

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 43  ESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLI 102
            S     +  K  L +         + L+S+  +  +  + +S+  GI  L  +  L L 
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLN 76

Query: 103 NCNMIRSLPELPFC--LNYLNTSDCK 126
             N +  +  L     L +L   + K
Sbjct: 77  G-NKLTDIKPLANLKNLGWLFLDENK 101

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 5e-08
 Identities = 26/115 (22%), Positives = 60/115 (52%), Gaps = 11/115 (9%)

Query: 4   LQEIDLFLS--GIKELPSSIEHIEGLKCLRL--NSCTKLGFLPESLCNLKKLQKLCLSQC 59
            ++++L      I+++ +++  ++  K L L  N+  K+     SL  ++ L+ L L + 
Sbjct: 25  AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI----SSLSGMENLRILSLGRN 80

Query: 60  RCLILSGLSSLS-SLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL 113
               +  L +++ +L+ L +S +   SL +GI +L  L+ L++ + N I +  E+
Sbjct: 81  LIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYM-SNNKITNWGEI 133

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 7/111 (6%)

Query: 14  IKELPSSIEHIEGLKCLRL------NSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGL 67
           IK+     E  + +                +  +  +L  LK  + L LS      +S L
Sbjct: 7   IKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSL 66

Query: 68  SSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLN 118
           S + +L+ L L  +  + +    +    L+ L +   N I SL  +   +N
Sbjct: 67  SGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLSGIEKLVN 116

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 19  SSIEHIEGLKCLR-LN-SCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCL 76
             I  + G++ LR L+     +  +         L++L +S  +   LSG+  L +L+ L
Sbjct: 61  EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120

Query: 77  ELSGHNFESLPTGISQLQRLKCLHLIN 103
            +S +N  +    I +L  L  L  + 
Sbjct: 121 YMS-NNKITNWGEIDKLAALDKLEDLL 146

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 8e-08
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 14/107 (13%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           L+++ L+   L G  E+P  + +++ L+ L L+     G +P  L N   L  + LS  R
Sbjct: 444 LRDLKLWLNMLEG--EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 61  CLILSG-----LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHL 101
              L+G     +  L +L  L+LS ++F  ++P  +   + L  L L
Sbjct: 502 ---LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 24/138 (17%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           LQ +D+    LSG  +   +I     LK L ++S   +G +P     LK LQ L L++ +
Sbjct: 225 LQHLDISGNKLSG--DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280

Query: 61  CLILSG------LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL 113
               +G        +  +L  L+LSG++F  ++P        L+ L L + N    LP  
Sbjct: 281 ---FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 114 PFCLNYLNTSDCKRLQSL 131
                       + L+ L
Sbjct: 338 TL-------LKMRGLKVL 348

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 14/118 (11%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           LQE+ L     +G  ++P ++ +   L  L L+     G +P SL +L KL+ L L    
Sbjct: 396 LQELYLQNNGFTG--KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 61  CLILSG-----LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPE 112
              L G     L  + +L+ L L  ++    +P+G+S    L  + L N  +   +P+
Sbjct: 454 ---LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 16/120 (13%)

Query: 4   LQEIDLF---LSGIKELPSSIEHI--EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQ 58
           L  +DL     SG   +  ++       L+ L L +    G +P +L N  +L  L LS 
Sbjct: 370 LLTLDLSSNNFSG--PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427

Query: 59  CRCLILSG-----LSSLSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPE 112
                LSG     L SLS L+ L+L  +  E  +P  +  ++ L+ L L   ++   +P 
Sbjct: 428 NY---LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 14/117 (11%)

Query: 4   LQEIDLF---LSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           L+ +D+     S    +P  +     L+ L ++     G    ++    +L+ L +S  +
Sbjct: 202 LEFLDVSSNNFST--GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 61  CLILSG---LSSLSSLKCLELSGHNFE-SLPTGIS-QLQRLKCLHLINCNMIRSLPE 112
                G      L SL+ L L+ + F   +P  +S     L  L L   +   ++P 
Sbjct: 259 ---FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 4   LQEIDLF---LSGIKELPSSIEH-IEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQC 59
           LQ + L     +G  E+P  +    + L  L L+     G +P    +   L+ L LS  
Sbjct: 271 LQYLSLAENKFTG--EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328

Query: 60  RCLILSG------LSSLSSLKCLELSGHNFE-SLPTGISQL-QRLKCLHLINCNMIRSLP 111
                SG      L  +  LK L+LS + F   LP  ++ L   L  L L + N    + 
Sbjct: 329 N---FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 17/116 (14%)

Query: 23  HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG----LSSLSSLKCLEL 78
            +  +             +  SL +L  L+ L LS      ++G        +SL  L+L
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH---INGSVSGFKCSASLTSLDL 107

Query: 79  SGHNFE-SLPTG--ISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
           S ++    + T   +     LK L++ +  +      +   L          L+ L
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK-VSGGLK------LNSLEVL 156

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 18/125 (14%)

Query: 16  ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSG-------LS 68
            + SS+  + GL+ L L++    G +         L  L LS+     LSG       L 
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNS---LSGPVTTLTSLG 123

Query: 69  SLSSLKCLELSGHNFE-SLPT-GISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCK 126
           S S LK L +S +  +      G  +L  L+ L L   ++  +        +      C 
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD-----GCG 178

Query: 127 RLQSL 131
            L+ L
Sbjct: 179 ELKHL 183

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 5/121 (4%)

Query: 19  SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLEL 78
           S I  + GL  L+  S        + L NL  L++L +S  +   +S L+ L++L+ L  
Sbjct: 147 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 206

Query: 79  SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLNTSDCKRLQSLPKISS 136
           + +    +   +  L  L  L L   N ++ +  L     L  L+ ++ + + +L  +S 
Sbjct: 207 TNNQISDIT-PLGILTNLDELSLNG-NQLKDIGTLASLTNLTDLDLANNQ-ISNLAPLSG 263

Query: 137 C 137
            
Sbjct: 264 L 264

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L+ +    + I ++   +  +  L  L LN   +L  +  +L +L  L  L L+  +   
Sbjct: 201 LESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQISN 257

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           L+ LS L+ L  L+L  +   ++   ++ L  L  L L   N +  +  +     L YL 
Sbjct: 258 LAPLSGLTKLTELKLGANQISNIS-PLAGLTALTNLELNE-NQLEDISPISNLKNLTYLT 315

Query: 122 TSDCKRLQSLPKISSC 137
                 +  +  +SS 
Sbjct: 316 LYFNN-ISDISPVSSL 330

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 14/126 (11%)

Query: 19  SSIEHIEGLK-----CLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSL 73
           + I     L       L   + T       S  +L ++  L   +     + G+  L++L
Sbjct: 15  NQIFTDTALAEKMKTVLGKTNVTDT----VSQTDLDQVTTLQADRLGIKSIDGVEYLNNL 70

Query: 74  KCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLNTSDCKRLQSL 131
             +  S +    +   +  L +L  + + N N I  +  L     L  L   + + +  +
Sbjct: 71  TQINFSNNQLTDIT-PLKNLTKLVDILMNN-NQIADITPLANLTNLTGLTLFNNQ-ITDI 127

Query: 132 PKISSC 137
             + + 
Sbjct: 128 DPLKNL 133

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 7e-07
 Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L E+ L  + I  +   +  +  L  L LN   +L  +   + NLK L  L L       
Sbjct: 267 LTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISD 323

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           +S +SSL+ L+ L    +    +   ++ L  +  L   + N I  L  L     +  L 
Sbjct: 324 ISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGH-NQISDLTPLANLTRITQLG 381

Query: 122 TSDCK 126
            +D  
Sbjct: 382 LNDQA 386

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 28/136 (20%), Positives = 59/136 (43%), Gaps = 9/136 (6%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L +I+   + + ++   ++++  L  + +N+  ++  +   L NL  L  L L   +   
Sbjct: 70  LTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITD 126

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNYLN 121
           +  L +L++L  LELS +    +   +S L  L+ L     N +  L  L     L  L+
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSF--GNQVTDLKPLANLTTLERLD 183

Query: 122 TSDCKRLQSLPKISSC 137
            S  K +  +  ++  
Sbjct: 184 ISSNK-VSDISVLAKL 198

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 8/131 (6%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLS--QCR 60
           L  I +  + I  +P  +     L  L L+   K+  +   SL  L  L KL LS     
Sbjct: 173 LSYIRIADTNITTIPQGL--PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSIS 229

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
            +    L++   L+ L L+ +    +P G++  + ++ ++L N N I ++    FC    
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGY 288

Query: 121 NTSDCKRLQSL 131
           NT        +
Sbjct: 289 NT-KKASYSGV 298

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 5/125 (4%)

Query: 1   MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRL--NSCTKLGFLPESLCNLKKLQKLCLS 57
            +  + I L  + I  L          ++ L L  N    + F  E   +   L+ L L 
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQ 177

Query: 58  QCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCL 117
                 + G    + LK L+LS +    +         +  + L N N +  + +     
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFS 236

Query: 118 NYLNT 122
             L  
Sbjct: 237 QNLEH 241

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 4   LQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           ++E+DL  + + ++  + +     L+ L L+S   L    + L +L  L+ L L+     
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-- 91

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPF 115
            +  L    S++ L  + +N   +       Q  K ++L N N I  L +L  
Sbjct: 92  -VQELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLAN-NKITMLRDLDE 140

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 4   LQEIDLFLSGIKELP--SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR- 60
           +Q +DL L+ I  +         + L+ L L     +  +   +    KL+ L LS  + 
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKL 203

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIR--SLPELPFCLN 118
             +     S + +  + L  +    +   +   Q L+   L   N     +L +      
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQ 262

Query: 119 YLNTSDCKRLQSLP 132
            + T   + ++ L 
Sbjct: 263 RVQTVAKQTVKKLT 276

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 41  LPESLCNLKKLQKLCLSQCR--CLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLK 97
           + E   N  + +   ++       + S   S  ++K L+LSG+    +    ++   +L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 98  CLHLINCNMIRSLPEL 113
            L+L + N++    +L
Sbjct: 62  LLNL-SSNVLYETLDL 76

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 4/112 (3%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLS--QCRC 61
           L+ +DL  + +  +    +   G+  + L +  KL  + ++L   + L+   L      C
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL 113
             L       + +   ++    + L     +   +  L          LP  
Sbjct: 252 GTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP 302

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 13/139 (9%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPES--LCNLKKLQKLCLSQCRC 61
           L+ +DL  +G+  + S+   +E L+ L       L  + E     +L+ L  L +S    
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 62  LIL--SGLSSLSSLKCLELSGHNF-ESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC- 116
            +      + LSSL+ L+++G++F E+    I ++L+ L  L L +   +  L    F  
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL-SQCQLEQLSPTAFNS 492

Query: 117 ---LNYLNTSDCKRLQSLP 132
              L  LN +   +L+S+P
Sbjct: 493 LSSLQVLNMASN-QLKSVP 510

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 32/141 (22%), Positives = 55/141 (39%), Gaps = 13/141 (9%)

Query: 4   LQEIDL---FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           L+ +DL    LS       S      LK L L+    +  +  +   L++L+ L      
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN 407

Query: 61  CLILSGLS---SLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC 116
              +S  S   SL +L  L++S  +      GI + L  L+ L +   +   +     F 
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 117 ----LNYLNTSDCKRLQSLPK 133
               L +L+ S C+ L+ L  
Sbjct: 468 ELRNLTFLDLSQCQ-LEQLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 17/139 (12%)

Query: 10  FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFL------PESLCNLKKLQKLCLSQCRCLI 63
           +  G + L            L+L S  +L F         S  +L  L+ L LS+     
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 64  LSGLS----SLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL-PFC-- 116
               S      +SLK L+LS +   ++ +    L++L+ L     + ++ + E   F   
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF-QHSNLKQMSEFSVFLSL 420

Query: 117 --LNYLNTSDCKRLQSLPK 133
             L YL+ S     +    
Sbjct: 421 RNLIYLDISHT-HTRVAFN 438

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESL-CNLKKLQKLCLS-- 57
           + +L  +DL  + ++ LP   + +  L  L ++   +L  LP      L +LQ+L L   
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN 134

Query: 58  QCRCLILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC 116
           + + L    L+    L+ L L+ +N   LP G+ + L+ L  L L   N + ++P+  F 
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFG 193

Query: 117 LNYLNT 122
            + L  
Sbjct: 194 SHLLPF 199

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 10/134 (7%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
             E++     +  LP  + +    L  L  N          +L    +L +L L +    
Sbjct: 12  HLEVNCDKRNLTALPPDLPKDTTILH-LSENLLYTFS--LATLMPYTRLTQLNLDRAELT 68

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC----LN 118
            L    +L  L  L+LS +  +SLP     L  L  L + + N + SLP         L 
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV-SFNRLTSLPLGALRGLGELQ 127

Query: 119 YLNTSDCKRLQSLP 132
            L     + L++LP
Sbjct: 128 ELYLKGNE-LKTLP 140

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 25/138 (18%), Positives = 61/138 (44%), Gaps = 12/138 (8%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
           L  ++L  + I +L + ++++  +  L L+      +     ++  L+ ++ L L+  + 
Sbjct: 65  LIGLELKDNQITDL-APLKNLTKITELELSGNPLKNV----SAIAGLQSIKTLDLTSTQI 119

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNY 119
             ++ L+ LS+L+ L L  +   ++   ++ L  L+ L +     +  L  L     L  
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSI-GNAQVSDLTPLANLSKLTT 177

Query: 120 LNTSDCKRLQSLPKISSC 137
           L   D K +  +  ++S 
Sbjct: 178 LKADDNK-ISDISPLASL 194

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 10/102 (9%)

Query: 18  PSSIEHIEGLKCLRLNSCTKLGFL------PESLCNLKKLQKLCLSQCRCLILSGLSSLS 71
           P++I  I     L   +  K+           +  +L  +  L         + G+  L+
Sbjct: 6   PTAINVIFPDPALA--NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLN 63

Query: 72  SLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL 113
           +L  LEL  +    L   +  L ++  L L + N ++++  +
Sbjct: 64  NLIGLELKDNQITDLA-PLKNLTKITELEL-SGNPLKNVSAI 103

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLS--QCR 60
           L  + +  + +  +P  +   E L  L L+   K+  +    L    KL +L L   Q R
Sbjct: 174 LNYLRISEAKLTGIPKDL--PETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQIR 230

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC 116
            +    LS L +L+ L L  +    +P G+  L+ L+ ++L   N I  +    FC
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFC 285

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 13/138 (9%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRC 61
             + +L    + +L  S + + G++    ++     L      +     L++L LS  + 
Sbjct: 21  AVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSL----AGMQFFTNLKELHLSHNQI 75

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--LNY 119
             LS L  L+ L+ L ++ +  ++L  GI     L  L L N N +R    L     L  
Sbjct: 76  SDLSPLKDLTKLEELSVNRNRLKNLN-GIPSAC-LSRLFLDN-NELRDTDSLIHLKNLEI 132

Query: 120 LNTSDCKRLQSLPKISSC 137
           L+  + K L+S+  +   
Sbjct: 133 LSIRNNK-LKSIVMLGFL 149

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 13/98 (13%)

Query: 21  IEHIEGLKCLRL-------NSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSL 73
           ++++ G+    L       N         +SL +LK L+ L +   +   +  L  LS L
Sbjct: 97  LKNLNGIPSACLSRLFLDNNELRDT----DSLIHLKNLEILSIRNNKLKSIVMLGFLSKL 152

Query: 74  KCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP 111
           + L+L G+   +   G+++L+++  + L       + P
Sbjct: 153 EVLDLHGNEITNT-GGLTRLKKVNWIDLTG-QKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 43  ESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLI 102
                L    K  L +     L     LS ++       N +SL  G+     LK LHL 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLS 71

Query: 103 NCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
           + N I  L  L          D  +L+ L
Sbjct: 72  H-NQISDLSPL---------KDLTKLEEL 90

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 52/302 (17%), Positives = 91/302 (30%), Gaps = 111/302 (36%)

Query: 1   MELLQ----EIDLFLSGIKELPSSIEH-IEGLKCLRLNSCTKLGFLPESL------CNLK 49
           +E+LQ    +ID   +   +  S+I+  I  ++   L    K       L       N K
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 50  KLQKLCLSQCRCLILS------------------------GLS---SLSSL-KCLELSGH 81
                 L  C+ L+ +                         L+     S L K L+    
Sbjct: 258 AWNAFNL-SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-- 314

Query: 82  NFESLPTGISQLQRLKCLHLINCNMI-RSLPELPFCLNYLNTSDCKRLQSLPKISSCLET 140
             + LP      + L   +    ++I  S+ +     +     +C +L ++  I S L  
Sbjct: 315 -PQDLP-----REVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI--IESSLNV 365

Query: 141 -PSNQTRG----------NSYLP--------------VMFKFVNCVKLHKGT--ERNFFA 173
               + R           ++++P               +   VN  KLHK +  E+    
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN--KLHKYSLVEKQ--- 420

Query: 174 NFQRRVHNALPGI-------------LHRK-VDR----------KLIDGVESAFVYVEVG 209
             +  +   +P I             LHR  VD            LI      + Y  +G
Sbjct: 421 PKESTIS--IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 210 FH 211
            H
Sbjct: 479 HH 480

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 4   LQEIDLFLSGIKELPS-SIEHIEGLKCLRL--NSCTKLGFLPESLCNLKKLQKLCLSQCR 60
            + I L  + I  L          ++ L L  N    + F  E   +   L+ L L    
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNF 180

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
              + G    + LK L+LS +    +         +  + L N N +  + +       L
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNL 239

Query: 121 NT 122
             
Sbjct: 240 EH 241

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 17  LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLS--QCRCLILSGLSSLSSLK 74
           +    ++    K  ++   +    L     +   +++L LS      +  + L+  + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 75  CLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLN 121
            L LS +        +  L  L+ L L N N ++ L   P  +  L+
Sbjct: 62  LLNLSSNVLYETLD-LESLSTLRTLDLNN-NYVQELLVGPS-IETLH 105

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL 62
           ++E+DL  + + ++  + +     L+ L L+S   L    + L +L  L+ L L+     
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY-- 91

Query: 63  ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC 116
            +  L    S++ L  + +N   +       Q  K ++L N N I  L +L   
Sbjct: 92  -VQELLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLAN-NKITMLRDLDEG 141

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 4   LQEIDLFLSGIKELPSS--IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR- 60
           +Q +DL L+ I  +  +      + L+ L L     +  +   +    KL+ L LS  + 
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSNKL 203

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIR--SLPELPFCLN 118
             +     S + +  + L  +    +   +   Q L+   L   N     +L +      
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG-NGFHCGTLRDFFSKNQ 262

Query: 119 YLNTSDCKRLQSLP 132
            + T   + ++ L 
Sbjct: 263 RVQTVAKQTVKKLT 276

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 10/138 (7%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-- 60
           +  ++L  + ++ L  ++      L  L +   T     PE    L  L+ L L      
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPELPFC--- 116
            L     +  ++L  L L  ++ + +      + + L  L L + N + S          
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL-SHNGLSSTKLGTQVQLE 145

Query: 117 -LNYLNTSDCKRLQSLPK 133
            L  L  S+ K +Q+L  
Sbjct: 146 NLQELLLSNNK-IQALKS 162

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 30/142 (21%), Positives = 49/142 (34%), Gaps = 22/142 (15%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRL--NSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           + EI L  +   +L  +S   +  L+ L L   +   +   P     L+ L  L LS   
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491

Query: 61  --CLILSGLSSLSSLKCLELSGHNFESLPTG---------ISQLQRLKCLHLINCNMIRS 109
              +    L  L  L+ L+L  +N   L            +  L  L  L+L + N    
Sbjct: 492 IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDE 550

Query: 110 LPELPFCLNYLNTSDCKRLQSL 131
           +P   F        D   L+ +
Sbjct: 551 IPVEVF-------KDLFELKII 565

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 1   MELLQEIDLFLSGIKEL--PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQ 58
           +  L+ +DL L+ I +         +E +  + L+    L     S   +  LQ+L L +
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463

Query: 59  CRC----LILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL 113
                     S    L +L  L+LS +N  ++    +  L++L+ L L + N +  L + 
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKH 522

Query: 114 PFCLNYLNT-SDCKRLQSL 131
                 +        L  L
Sbjct: 523 ANPGGPIYFLKGLSHLHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 26/143 (18%), Positives = 48/143 (33%), Gaps = 20/143 (13%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLS----- 57
           L  +DL  + +  +   S   +  L+   L           SL  L  ++ L L      
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 58  ------QCRCLILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHL-INCNMIRS 109
                     +       L  L+ L +  ++   + + + + L  LK L L  +   +R+
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 110 LPELPFC------LNYLNTSDCK 126
           L    F       L+ LN +  K
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNK 392

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 14/134 (10%)

Query: 4   LQEIDLFLSGIKELP--SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR- 60
           LQ +D   S +K +   S+   +E L  L ++              L  L  L ++    
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 61  --CLILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFCL 117
               + +  ++ ++L  L+LS    E +  G+   L RL+ L++ + N +  L    +  
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM-SHNNLLFLDSSHY-- 517

Query: 118 NYLNTSDCKRLQSL 131
                +    L +L
Sbjct: 518 -----NQLYSLSTL 526

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 12/135 (8%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQC--R 60
           LQ +DL    I+ +   +   +  L  L L       F P S   L  L+ L   +    
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTG--ISQLQRLKCLHL-------INCNMIRSLP 111
            L    +  L +LK L ++ +   S       S L  L  + L       I  N ++ L 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 112 ELPFCLNYLNTSDCK 126
           E P     L+ S   
Sbjct: 178 ENPQVNLSLDMSLNP 192

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 15/125 (12%)

Query: 15  KELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC--LILSGLSSLSS 72
            ++PSS ++I+    L  N    L     S  N  +LQ L LS+C    +       L  
Sbjct: 28  DDIPSSTKNID----LSFNPLKIL--KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH 81

Query: 73  LKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSDCKR 127
           L  L L+G+  +S   G  S L  L+ L  +    + SL   P      L  LN +    
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHN-F 139

Query: 128 LQSLP 132
           + S  
Sbjct: 140 IHSCK 144

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           +  + L    IK L    +H    + L +  C +L   P    +L  L+ L L+  +  I
Sbjct: 287 VSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRC-QLKQFPTL--DLPFLKSLTLTMNKGSI 342

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQ---LQRLKCLHLINCNMIRSLPELPFCLNYL 120
                +L SL  L+LS +                 L+ L L + N    +      L  L
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL-SFNGAIIMSANFMGLEEL 401

Query: 121 NT 122
             
Sbjct: 402 QH 403

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 32/140 (22%), Positives = 56/140 (40%), Gaps = 12/140 (8%)

Query: 4   LQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR- 60
           ++ +DL  + I  +    +     L+ L L S  ++  +  ++  +L  L+ L LS    
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 61  -CLILSGLSSLSSLKCLELSGHNFESLPTG--ISQLQRLKCLHLINCNMIRSLPELPFC- 116
             L  S    LSSLK L L G+ +++L        L  L+ L + N      +  + F  
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 117 ---LNYLNTSDCKRLQSLPK 133
              LN L       L++   
Sbjct: 147 LTSLNELEIKALS-LRNYQS 165

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 11/146 (7%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRL--NSCTKLGFLPESLC-NLKKLQKLCLSQC 59
           ++ I +  S +  +P S  +H++ L+ L L  N   +      +       LQ L LSQ 
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 60  RCLILSG----LSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP-ELP 114
               +      L +L +L  L++S + F  +P      ++++ L+L +   IR +   +P
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL-SSTGIRVVKTCIP 430

Query: 115 FCLNYLNTSDCKRLQSLPKISSCLET 140
             L  L+ S+   L S       L+ 
Sbjct: 431 QTLEVLDVSNN-NLDSFSLFLPRLQE 455

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 15/196 (7%)

Query: 4   LQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLC--NLKKLQKLCLSQC- 59
           L+ +DL  + +  L SS    +  LK L L        L  +    NL  LQ L +    
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNL-MGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 60  --RCLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPELPF- 115
               +     + L+SL  LE+   +  +  +  +  ++ +  L L   +    L E+   
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL-SESAFLLEIFAD 193

Query: 116 CLNYLNTSD--CKRLQSLPKISSCLETPSNQTRGNSYLPVMF---KFVNCVKLHKGTERN 170
            L+ +   +     L         ++  S+  +  ++   +     F   +KL +     
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 171 FFANFQRRVHNALPGI 186
               F     N L   
Sbjct: 254 SEVEFDDCTLNGLGDF 269

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 21/126 (16%)

Query: 17  LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGL-----SSLS 71
           LP S ++++    L  N    LG    S  +  +LQ L LS+C    +  +      SLS
Sbjct: 26  LPFSTKNLD----LSFNPLRHLG--SYSFFSFPELQVLDLSRCE---IQTIEDGAYQSLS 76

Query: 72  SLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSDCK 126
            L  L L+G+  +SL  G  S L  L+ L  +  N + SL   P      L  LN +   
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH-N 134

Query: 127 RLQSLP 132
            +QS  
Sbjct: 135 LIQSFK 140

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 14/141 (9%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESL-CNLKKLQKLCLS--QC 59
           L  + L  + I+ L       +  L+ L       L  L      +LK L++L ++    
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLI 136

Query: 60  RCLILSGL-SSLSSLKCLELSGHNFESLPTGI----SQLQRLKCLHLINCNMIRSLPELP 114
           +   L    S+L++L+ L+LS +  +S+         Q+  L     ++ N +  +    
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 115 FC---LNYLNTSDCKRLQSLP 132
           F    L  L     + L+S+P
Sbjct: 197 FKEIRLKELALDTNQ-LKSVP 216

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 12/135 (8%)

Query: 4   LQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-- 60
           LQ +DL    I+ +   + + +  L  L L           +   L  LQKL   +    
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 61  CLILSGLSSLSSLKCLELSGHNFESL--PTGISQLQRLKCLHL-------INCNMIRSLP 111
            L    +  L +LK L ++ +  +S   P   S L  L+ L L       I C  +R L 
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173

Query: 112 ELPFCLNYLNTSDCK 126
           ++P     L+ S   
Sbjct: 174 QMPLLNLSLDLSLNP 188

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 15/137 (10%)

Query: 10  FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFL------PESLCNLKKLQKLCLSQCRC-- 61
           +  G + L            L+L S  +L F         S  +L  L+ L LS+     
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 62  --LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC--- 116
                      +SLK L+LS +   ++ +    L++L+ L   + N+ +      F    
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 117 -LNYLNTSDCKRLQSLP 132
            L YL+ S     +   
Sbjct: 422 NLIYLDISHT-HTRVAF 437

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 15/138 (10%)

Query: 1   MELLQEIDL---FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLS 57
           +  L+ +DL    LS       S      LK L L+    +  +  +   L++L+ L   
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQ 404

Query: 58  QCR---CLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL 113
                     S   SL +L  L++S  +      G  + L  L+ L +   +   +    
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 114 PFCLNYLNTSDCKRLQSL 131
            F       ++ + L  L
Sbjct: 465 IF-------TELRNLTFL 475

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 20/135 (14%)

Query: 10  FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSS 69
           +      LP+       ++ +       +    + +  L+ ++K+ L +C  +    L  
Sbjct: 46  WQKDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER 105

Query: 70  LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMI--RSLPELPFC--LNYLNTSDC 125
           LS L+ L+ S                +  + +I+C  +  + +  L     L YL  SD 
Sbjct: 106 LSQLENLQKS----------------MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149

Query: 126 KRLQSLPKISSCLET 140
             ++   KI    +T
Sbjct: 150 PGVKEKEKIVQAFKT 164

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 16/135 (11%)

Query: 4   LQEIDLFLSGIKELPSS--IEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCR 60
           L+ +D   S +K++        +  L  L ++               L  L+ L ++   
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNS 161

Query: 61  CL--ILSG-LSSLSSLKCLELSGHNFESLPTGISQ-LQRLKCLHLINCNMIRSLPELPFC 116
                L    + L +L  L+LS    E L       L  L+ L++ + N   SL   P+ 
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPY- 219

Query: 117 LNYLNTSDCKRLQSL 131
                      LQ L
Sbjct: 220 ------KCLNSLQVL 228

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 15/138 (10%)

Query: 5   QEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
            EI     G+  +P+ I      L+ L  N    L         L +L KL LS      
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLE-LESNKLQSLP--HGVFDKLTQLTKLSLSSNGLSF 66

Query: 64  LS----GLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPF---- 115
                      +SLK L+LS +   ++ +    L++L+ L     + ++ + E       
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF-QHSNLKQMSEFSVFLSL 125

Query: 116 -CLNYLNTSDCKRLQSLP 132
             L YL+ S     +   
Sbjct: 126 RNLIYLDISHT-HTRVAF 142

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 25  EGLKCLRLNSC-TKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNF 83
             ++ L L++C +  G +         L+ L L     + +S L  L  LK LELS +  
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRI 83

Query: 84  ESLPTGISQ-LQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
                 +++ L  L  L+L   N ++ +      L  L     + L+SL
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSG-NKLKDIST----LEPL--KKLECLKSL 125

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 5/124 (4%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-- 60
           L  + L  + +  +  +     + LK L              L N K L+ L L      
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 61  CLILSGLSSLSSLKCLELSGHNFESLPTG-ISQLQRLKCLHL-INCNMIRSLPELPFCLN 118
            + L        LK L+   +    L    +S LQ+   L L +N N I  +    F   
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSA 202

Query: 119 YLNT 122
              +
Sbjct: 203 VFQS 206

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 26/160 (16%), Positives = 45/160 (28%), Gaps = 40/160 (25%)

Query: 4   LQEIDLFLSG--IKELPSSIEHIEGLKCLRLNSCTKLGFLPESL--CNLKKLQKLCLSQC 59
              + L L+G  I  +          + L       L  + + L    ++ L        
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238

Query: 60  RC------------------LILSG----------LSSLSSLKCLELSGHNFESLPTGIS 91
                               + L                S L+ L+L+  +   LP+G+ 
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298

Query: 92  QLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
            L  LK L L   N   +L ++         S+   L  L
Sbjct: 299 GLSTLKKLVLSA-NKFENLCQISA-------SNFPSLTHL 330

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 16/135 (11%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCR-- 60
           LQE+DL  + + ELPS +  +  LK L L++  K   L + S  N   L  L +      
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 61  -CLILSGLSSLSSLKCLELSG---HNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC 116
             L    L +L +L+ L+LS       +     +  L  L+ L+L   N   SL    F 
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEAF- 396

Query: 117 LNYLNTSDCKRLQSL 131
                  +C +L+ L
Sbjct: 397 ------KECPQLELL 405

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 4   LQEIDLFLSGIKEL--PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR- 60
           L+ +DL  + +K     S  +++  LK L L+         +    L  LQ L L     
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 61  ----CLILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPF 115
                   + L +L  L+ L LS  +  S+     + L+ +  + L + N + S      
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH-NRLTSSSIEAL 520

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 16/147 (10%)

Query: 1   MELLQEIDL---FLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLS 57
           +E L+E+DL    +         + ++  L+ L L+    L    E+     +L+ L L+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 58  QCR---CLILSGLSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPEL 113
             R       S   +L  LK L LS    +     +   L  L+ L+L   N        
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG-NHFPKGNIQ 467

Query: 114 PFC-------LNYLNTSDCKRLQSLPK 133
                     L  L  S C  L S+ +
Sbjct: 468 KTNSLQTLGRLEILVLSFC-DLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 26/123 (21%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 17  LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR--CLILSGLSSLSSLK 74
           LP+S E +E       N    +     +   L  L  L L++C+   +      S   L 
Sbjct: 31  LPNSTECLE----FSFNVLPTI--QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLD 84

Query: 75  CLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSDCKRLQ 129
            L L+ +    +     S  + LK L  I    I S+  +P      L  L       + 
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQ-TGISSIDFIPLHNQKTLESLYLGSN-HIS 142

Query: 130 SLP 132
           S+ 
Sbjct: 143 SIK 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 9/109 (8%)

Query: 25  EGLKCLRLNSC-TKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNF 83
             +K L L++  +  G L       ++L+ L         ++ L  L+ LK LELS +  
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76

Query: 84  ESLPTGISQ-LQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
                 +++    L  L+L   N I+ L      +  L     + L+SL
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSG-NKIKDLST----IEPL--KKLENLKSL 118

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 17  LPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCLILSG--LSSLSSL 73
           LPS    ++    L  N+ ++L    E +   L  L  L LS      +S      + +L
Sbjct: 37  LPSYTALLD----LSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90

Query: 74  KCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC----LNYLNTSDCKRL 128
           + L+LS ++  +L   + S LQ L+ L L   N I  +    F     L  L  S   ++
Sbjct: 91  RYLDLSSNHLHTLDEFLFSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQN-QI 148

Query: 129 QSLP 132
              P
Sbjct: 149 SRFP 152

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 7/118 (5%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRC 61
           L+E++L  + +  +      ++  L+ L L S  +L  +P      L  L KL +S+ + 
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKI 116

Query: 62  LILSG--LSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFC 116
           +IL       L +LK LE+  ++   +     S L  L+ L L     + S+P     
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL-EKCNLTSIPTEALS 173

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 14/133 (10%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR- 60
           L+ +++  + +  +       +  L+ L L  C  L  +P E+L +L  L  L L     
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 61  -CLILSGLSSLSSLKCLELSGHNF-ESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLN 118
             +       L  LK LE+S   + +++         L  L + +CN + ++P L     
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAV--- 244

Query: 119 YLNTSDCKRLQSL 131
                    L+ L
Sbjct: 245 ----RHLVYLRFL 253

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRC 61
            + +    S +++LP+++ +    ++ L LN   ++  +   +      +QKL +     
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAI 105

Query: 62  LILSG--LSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFCLN 118
             L      ++  L  L L  ++  SLP GI     +L  L + N N +  + +  F   
Sbjct: 106 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTF--- 161

Query: 119 YLNTSDCKRLQSL 131
                    LQ+L
Sbjct: 162 ----QATTSLQNL 170

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCL 62
           L  + L  + + +    + +  GL  + L S  +L  +       +++L++L +S  R +
Sbjct: 228 LTILKLQHNNLTDTAW-LLNYPGLVEVDL-SYNELEKIMYHPFVKMQRLERLYISNNRLV 285

Query: 63  ILSG-LSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC-LNYL 120
            L+     + +LK L+LS ++   +     Q  RL+ L+L + N I +L       L  L
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH-NSIVTLKLSTHHTLKNL 344

Query: 121 NTSD 124
             S 
Sbjct: 345 TLSH 348

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 12/132 (9%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEG---LKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQC 59
           L+ + L ++ +KEL    E       L+ L ++  +      +  C   K L  L +S  
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 60  RCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNY 119
                        +K L+L  +  +S+P  + +L+ L+ L++ + N ++S+P+  F    
Sbjct: 410 ILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVAS-NQLKSVPDGIF---- 464

Query: 120 LNTSDCKRLQSL 131
                   LQ +
Sbjct: 465 ---DRLTSLQKI 473

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 14/133 (10%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRC 61
            + +    S +++LP+++ +    ++ L LN   ++  +   +      +QKL +     
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAI 111

Query: 62  LILSG--LSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFCLN 118
             L      ++  L  L L  ++  SLP GI     +L  L + N N +  + +  F   
Sbjct: 112 RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTF--- 167

Query: 119 YLNTSDCKRLQSL 131
                    LQ+L
Sbjct: 168 ----QATTSLQNL 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 5/114 (4%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCL 62
           L  + L  + + +    + +  GL  + L S  +L  +       +++L++L +S  R +
Sbjct: 234 LTILKLQHNNLTDTAW-LLNYPGLVEVDL-SYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 63  ILSG-LSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPF 115
            L+     + +LK L+LS ++   +     Q  RL+ L+L + N I +L     
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH-NSIVTLKLSTH 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 13  GIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR--CLILSGLSS 69
           G  +    +   E L  L + +   L  L    L  L +L+ L + +     +       
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 70  LSSLKCLELSGHNFESLPTGISQLQRLKCLHL 101
              L  L LS +  ESL     Q   L+ L L
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGLSLQELVL 110

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 13/120 (10%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQCRC 61
           L+ + +  + ++ LP  + + +  L  LRL+   +L  LP  +  +L KL  L L     
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNE- 144

Query: 62  LILSGLS-----SLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPF 115
             L  L       L+SLK L L  +  + +P G   +L  LK L L N N ++ +PE  F
Sbjct: 145 --LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAF 201

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 12/132 (9%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRL--NSCTKLGFLP-ESLCNL-KKLQKLCLSQC 59
           LQ + L  +G+K         + +  L     S   L     +  C   + +  L LS  
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 60  RCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNY 119
                        +K L+L  +   S+P  ++ LQ L+ L++ + N ++S+P+  F    
Sbjct: 439 MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVF---- 493

Query: 120 LNTSDCKRLQSL 131
                   LQ +
Sbjct: 494 ---DRLTSLQYI 502

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 32/131 (24%), Positives = 44/131 (33%), Gaps = 17/131 (12%)

Query: 9   LFLSG---IKELPSSI-EHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCLI 63
           L LS    ++ +  +    +  L  L L+ C  L  L       L  LQ L L       
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 64  LSG--LSSLSSLKCLELSGHNFESLPTGI-SQLQRLKCLHLINCNMIRSLPELPFCLNYL 120
           L       L +L  L L G+   S+P      L  L  L L   N +  +    F     
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ-NRVAHVHPHAF----- 197

Query: 121 NTSDCKRLQSL 131
              D  RL +L
Sbjct: 198 --RDLGRLMTL 206

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 32/146 (21%), Positives = 56/146 (38%), Gaps = 16/146 (10%)

Query: 4   LQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRC 61
           LQ ++L  + + EL SS    +  +  + L     +  + + +   L+KLQ L L     
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA- 373

Query: 62  LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLN--- 118
             L+ +  + S+  + LSG+   +LP        +        N + +L  L F L    
Sbjct: 374 --LTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSE----NRLENLDILYFLLRVPH 427

Query: 119 --YLNTSDCKRLQSLPKISSCLETPS 142
              L  +   R  S     +  E PS
Sbjct: 428 LQILILNQN-RFSSCSGDQTPSENPS 452

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 9/123 (7%)

Query: 1   MELLQEIDLFLSGIKEL--PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQ 58
           +E LQ ++L            +  ++  L+ L L S       P++   L  L +L L  
Sbjct: 47  LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYF 106

Query: 59  CR----CLILSGLSSLSSLKCLELSGHNFESLPTG--ISQLQRLKCLHLINCNMIRSLPE 112
           C      L      +L +L  L+LS +   SL       +L  LK +   + N I  + E
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCE 165

Query: 113 LPF 115
              
Sbjct: 166 HEL 168

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 27  LKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESL 86
                  +         S   L  L  L         ++G+  L+ L  L  + +N  +L
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL 79

Query: 87  PTGISQLQRLKCLHLINCNMIRSLPELPFC-LNYLNTSDCKRLQSLP 132
              +SQ   L  L   + N + +L   P   L YLN    K L  L 
Sbjct: 80  D--LSQNTNLTYLACDS-NKLTNLDVTPLTKLTYLNCDTNK-LTKLD 122

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 10/130 (7%)

Query: 4   LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI 63
           L  +D   + I EL   +   + L  L  ++   +  L   L    +L  L  S  + L 
Sbjct: 172 LTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD--LNQNIQLTFLDCSSNK-LT 225

Query: 64  LSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFC-LNYLNT 122
              ++ L+ L   + S +    L   +S L +L  LH I    +  +       L Y   
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQ-TDLLEIDLTHNTQLIYFQA 282

Query: 123 SDCKRLQSLP 132
             C++++ L 
Sbjct: 283 EGCRKIKELD 292

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 19  SSIEHIEGLKCLRLNSC--TKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCL 76
           +   +    + L L       +  L      L +   +  S      L G   L  LK L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGA---TLDQFDAIDFSDNEIRKLDGFPLLRRLKTL 69

Query: 77  ELSGHNFESLPTGISQ-LQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSL 131
            ++ +    +  G+ Q L  L  L L N N +  L +    L+ L  +  K L  L
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTN-NSLVELGD----LDPL--ASLKSLTYL 118

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 18/121 (14%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 4   LQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRC 61
           L+E+++  S ++     S++ I+ +  L L+   +   L E  +     ++ L L     
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDL 234

Query: 62  ----------LILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLP 111
                        + L    + + ++++  +   +   ++Q+  L  L     N ++S+P
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVP 293

Query: 112 E 112
           +
Sbjct: 294 D 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.75
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.73
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.71
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.7
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.7
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.69
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.69
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.65
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.65
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.65
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.65
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.65
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.64
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.64
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.63
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.63
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.62
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.62
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.62
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.62
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.62
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.62
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.62
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.61
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.61
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.61
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.61
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.59
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.59
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.57
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.57
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.56
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.56
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.56
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.56
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.56
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.56
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.55
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.54
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.54
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.52
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.52
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.51
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.5
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.48
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.46
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.35
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.25
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.23
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.23
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.99
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.76
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.75
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.67
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.41
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.41
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.28
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.14
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.1
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.4
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.26
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.13
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.92
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.81
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.77
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.76
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.59
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.49
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.93

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=2.7e-22  Score=163.55  Aligned_cols=171  Identities=26%  Similarity=0.404  Sum_probs=91.1

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCC---------CCCCcEEeccccccc-ccccCCCCCC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCN---------LKKLQKLCLSQCRCL-ILSGLSSLSS   72 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~---------l~~L~~L~l~~~~~~-~p~~~~~l~~   72 (219)
                      +|++|++++|.++.+|..++.+++|++|++++|...+.+|..+..         +++|++|++++|.+. +|..++.+++
T Consensus       128 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~  207 (328)
T 4fcg_A          128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN  207 (328)
T ss_dssp             TCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTT
T ss_pred             CCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCC
Confidence            344444444444444444444444444444444444444443322         444444444444433 4555556666


Q ss_pred             CCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCC
Q 027793           73 LKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNS  149 (219)
Q Consensus        73 L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~  149 (219)
                      |++|++++|.++.+|..+..+++|++|++++|+..+.+|..   +++|+.|++++|..++.+|..+..+           
T Consensus       208 L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l-----------  276 (328)
T 4fcg_A          208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL-----------  276 (328)
T ss_dssp             CCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC-----------
T ss_pred             CCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC-----------
Confidence            66666666666666666666666666666666666666543   2466666666666666666554433           


Q ss_pred             CCCeEEEEcCCcccccccccchhHhHHHHHhhhCCCc
Q 027793          150 YLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGI  186 (219)
Q Consensus       150 ~~l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~  186 (219)
                      ..++.+++++|+.+...+.  .+..+..+....+|..
T Consensus       277 ~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          277 TQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPPH  311 (328)
T ss_dssp             TTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCGG
T ss_pred             CCCCEEeCCCCCchhhccH--HHhhccCceEEeCCHH
Confidence            1445777777766666553  3334444444444433

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.84  E-value=1.9e-20  Score=152.54  Aligned_cols=171  Identities=26%  Similarity=0.368  Sum_probs=133.8

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCC---------C
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLS---------S   69 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~---------~   69 (219)
                      +++|++|++++|.++.+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|...  +|..+.         .
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            35788888888888888888888888888888888555 77888888888888888887654  555544         3


Q ss_pred             CCCCCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccC
Q 027793           70 LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTR  146 (219)
Q Consensus        70 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~  146 (219)
                      +++|++|++++|.++.+|..++.+++|++|++++|.. ..+|..   +++|++|++++|...+.+|..+..+        
T Consensus       182 l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l--------  252 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--------  252 (328)
T ss_dssp             STTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCC-CCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC--------
T ss_pred             CCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCC-CcCchhhccCCCCCEEECcCCcchhhhHHHhcCC--------
Confidence            8899999999999999998999999999999998654 456653   4789999999999888888776654        


Q ss_pred             CCCCCCeEEEEcCCcccccccccchhHhHHHHHhhhCCCc
Q 027793          147 GNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGI  186 (219)
Q Consensus       147 ~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~  186 (219)
                         ..++.+++++|..+...+.  .+..+..+...++.++
T Consensus       253 ---~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          253 ---APLKRLILKDCSNLLTLPL--DIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             ---CCCCEEECTTCTTCCBCCT--TGGGCTTCCEEECTTC
T ss_pred             ---CCCCEEECCCCCchhhcch--hhhcCCCCCEEeCCCC
Confidence               2566999999988777664  3455566666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=7e-19  Score=142.36  Aligned_cols=137  Identities=20%  Similarity=0.295  Sum_probs=105.5

Q ss_pred             CCccEEEeecCCCc---ccCccccCCCCCcEEeccC-CCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCE
Q 027793            2 ELLQEIDLFLSGIK---ELPSSIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKC   75 (219)
Q Consensus         2 ~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~   75 (219)
                      .+++.|+++++.++   .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|.+.  +|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            36788888888887   4787888888888888884 7677778888888888888888888875  6777888888888


Q ss_pred             EEecCCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCCC---C-CCCeEeccCCcCCCcCCccccCC
Q 027793           76 LELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPELP---F-CLNYLNTSDCKRLQSLPKISSCL  138 (219)
Q Consensus        76 L~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~---~-~L~~L~l~~~~~l~~lp~~~~~~  138 (219)
                      |++++|.++ .+|..+..+++|++|++++|...+.+|..+   . +|++|++++|..-..+|..+..+
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l  197 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence            888888887 778888888888888888876655666532   3 77888888865544666655544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.75  E-value=2.6e-18  Score=139.01  Aligned_cols=135  Identities=16%  Similarity=0.250  Sum_probs=102.6

Q ss_pred             CCCccEEEeec-CCCcc-cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEE
Q 027793            1 MELLQEIDLFL-SGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCL   76 (219)
Q Consensus         1 l~~L~~L~l~~-~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L   76 (219)
                      +++|++|++++ |.+.+ +|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.  +|..+..+++|++|
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence            46788888884 77775 7877888888888888888777788888888888888888888876  67778888888888


Q ss_pred             EecCCcCC-ccchhhhCCC-CCCEEeccCCCCCCcCCCCC--CCCCeEeccCCcCCCcCCccc
Q 027793           77 ELSGHNFE-SLPTGISQLQ-RLKCLHLINCNMIRSLPELP--FCLNYLNTSDCKRLQSLPKIS  135 (219)
Q Consensus        77 ~l~~n~l~-~lp~~l~~l~-~L~~L~l~~~~~l~~lp~~~--~~L~~L~l~~~~~l~~lp~~~  135 (219)
                      ++++|.++ .+|..+..++ +|+.|++++|...+.+|..+  ..|+.|++++|..-...|..+
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~  217 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF  217 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGC
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHH
Confidence            88888887 7888888887 88888888876655666543  137777777764433444333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.74  E-value=7.1e-18  Score=151.56  Aligned_cols=96  Identities=23%  Similarity=0.211  Sum_probs=49.0

Q ss_pred             CCCCCEEEecCCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCcccc
Q 027793           70 LSSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQT  145 (219)
Q Consensus        70 l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~  145 (219)
                      +++|+.|++++|.++ .+|..++++++|+.|++++|...+.+|..   +++|+.|++++|...+.+|..+..+       
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l-------  703 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL-------  703 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC-------
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC-------
Confidence            344555555555554 55555555555666666655555555543   2455566666555444555554443       


Q ss_pred             CCCCCCCeEEEEcCCcccccccccchhHhHH
Q 027793          146 RGNSYLPVMFKFVNCVKLHKGTERNFFANFQ  176 (219)
Q Consensus       146 ~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~  176 (219)
                          ..++.++++++.--..+|....+..+.
T Consensus       704 ----~~L~~L~ls~N~l~g~iP~~~~~~~~~  730 (768)
T 3rgz_A          704 ----TMLTEIDLSNNNLSGPIPEMGQFETFP  730 (768)
T ss_dssp             ----CCCSEEECCSSEEEEECCSSSSGGGSC
T ss_pred             ----CCCCEEECcCCcccccCCCchhhccCC
Confidence                134466666653333344333333333

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.74  E-value=3.2e-17  Score=130.63  Aligned_cols=123  Identities=24%  Similarity=0.208  Sum_probs=67.6

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccc-cc--ccccCCCCCCCCEEE
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-CL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~--~p~~~~~l~~L~~L~   77 (219)
                      ++|++|++++|.++.++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|. +.  .|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            356666666666666553 35666666666666665544445556666666666666664 32  244555556666666


Q ss_pred             ecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCC
Q 027793           78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDC  125 (219)
Q Consensus        78 l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~  125 (219)
                      +++|.++.+ |..+..+++|++|++++|.. +.++. .   +++|++|++++|
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n  163 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGN  163 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCC
Confidence            666665544 33455555666666655432 23332 1   245555555553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=2.7e-16  Score=124.57  Aligned_cols=147  Identities=20%  Similarity=0.243  Sum_probs=91.3

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEEe
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLEL   78 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~l   78 (219)
                      +++|++|++++|.+++++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. + +..+..+++|++|++
T Consensus        62 l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            356777777777776654 4666777777777777555555555667777777777777665 2 334667777777777


Q ss_pred             cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCCCcCCcc-ccCCCCCccccCCCCCCC
Q 027793           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPKI-SSCLETPSNQTRGNSYLP  152 (219)
Q Consensus        79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~~~~~~~l  152 (219)
                      ++|.++.+|.. +..+++|+.|++++|+.. .++. .   +++|++|++++|. ++.++.. +..+           ..+
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l-----------~~L  207 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRL-----------TSL  207 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC-----------TTC
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCC-----------cCC
Confidence            77777765543 466777777777775433 3432 1   3577777777753 4444432 2222           145


Q ss_pred             eEEEEcCCc
Q 027793          153 VMFKFVNCV  161 (219)
Q Consensus       153 ~~l~~~~c~  161 (219)
                      +.+++++++
T Consensus       208 ~~L~l~~N~  216 (272)
T 3rfs_A          208 QYIWLHDNP  216 (272)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEccCCC
Confidence            577777664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=3.9e-17  Score=146.74  Aligned_cols=135  Identities=25%  Similarity=0.318  Sum_probs=89.4

Q ss_pred             CCCccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.+++ +|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.  +|..+..+++|++|+
T Consensus       417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  496 (768)
T 3rgz_A          417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS  496 (768)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence            3567777777777664 5666777777777777777666666766777777777777777655  566666667777777


Q ss_pred             ecCCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccc
Q 027793           78 LSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKIS  135 (219)
Q Consensus        78 l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~  135 (219)
                      +++|+++ .+|.+++.+++|+.|++++|...+.+|..   +++|+.|++++|.....+|..+
T Consensus       497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred             ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence            7777766 66666666777777777766655566643   2566666666665555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.73  E-value=2.1e-17  Score=133.50  Aligned_cols=131  Identities=24%  Similarity=0.251  Sum_probs=60.5

Q ss_pred             CccEEEeecCCCcccCccccCC-----CCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----ccccC--CCCC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHI-----EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----ILSGL--SSLS   71 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~p~~~--~~l~   71 (219)
                      +|++|++++|.++++|..++.+     ++|++|++++|.+.+..|..++.+++|++|++++|...    .|..+  ..++
T Consensus       122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~  201 (312)
T 1wwl_A          122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP  201 (312)
T ss_dssp             CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT
T ss_pred             CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC
Confidence            4444444444444444333333     44555555554444433444555555555555555432    22222  4555


Q ss_pred             CCCEEEecCCcCCccc---h-hhhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCCcCCCcCCcc
Q 027793           72 SLKCLELSGHNFESLP---T-GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPKI  134 (219)
Q Consensus        72 ~L~~L~l~~n~l~~lp---~-~l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~~~l~~lp~~  134 (219)
                      +|++|++++|.++.++   . .+..+++|+.|++++|......|.    .+++|++|++++| .++.+|..
T Consensus       202 ~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~  271 (312)
T 1wwl_A          202 TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG  271 (312)
T ss_dssp             TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS
T ss_pred             CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhh
Confidence            5555555555555222   1 123445555555555443332221    1245555555553 34455443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=3.1e-16  Score=124.11  Aligned_cols=122  Identities=24%  Similarity=0.293  Sum_probs=64.1

Q ss_pred             CccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEec
Q 027793            3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLELS   79 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~   79 (219)
                      ++++|++++|.++.++. .+..+++|++|++++|.+....+..+..+++|++|++++|.+. +| ..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            46666666666666554 3566666666666666444333333455666666666666554 22 234555555555555


Q ss_pred             CCcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCC
Q 027793           80 GHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDC  125 (219)
Q Consensus        80 ~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~  125 (219)
                      +|.++.++. .+..+++|++|++++|. ++.+|..    +++|++|++++|
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCC
Confidence            555554432 34555555555555542 2333321    245555555553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=7e-17  Score=129.30  Aligned_cols=100  Identities=21%  Similarity=0.228  Sum_probs=51.4

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~   80 (219)
                      ++++++++++++++.+|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+. ++. ...+++|++|++++
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~   86 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSH   86 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCS
T ss_pred             CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEECCC
Confidence            445556666655555555432  45555555555444444445555555555555555544 221 24445555555555


Q ss_pred             CcCCccchhhhCCCCCCEEeccCC
Q 027793           81 HNFESLPTGISQLQRLKCLHLINC  104 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~  104 (219)
                      |.++.+|..+..+++|++|++++|
T Consensus        87 N~l~~l~~~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           87 NQLQSLPLLGQTLPALTVLDVSFN  110 (290)
T ss_dssp             SCCSSCCCCTTTCTTCCEEECCSS
T ss_pred             CcCCcCchhhccCCCCCEEECCCC
Confidence            555555544444555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.5e-16  Score=120.13  Aligned_cols=127  Identities=23%  Similarity=0.249  Sum_probs=109.7

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEec
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~   79 (219)
                      ++|++|++++|.++++| .+..+++|++|++++|. ...+ ..+..+++|++|++++|.+.  .+..+..+++|++|+++
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            57999999999999999 58999999999999993 3444 37889999999999999987  57889999999999999


Q ss_pred             CCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCC--CCCCCeEeccCCcCCCcCC
Q 027793           80 GHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        80 ~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~~~~l~~lp  132 (219)
                      +|.++ ..|..+..+++|++|++++|..++.+|..  +++|++|++++| .++.++
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n-~i~~~~  175 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHDYR  175 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB-CCCCCT
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC-CCcChH
Confidence            99998 57788999999999999998767777743  478999999996 466665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=4.5e-16  Score=121.88  Aligned_cols=147  Identities=24%  Similarity=0.313  Sum_probs=112.3

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~l   78 (219)
                      ++++.|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. + +..+..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            468889999998888655 4888899999999998777777777888999999999999876 3 356788899999999


Q ss_pred             cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCCCcCCc-cccCCCCCccccCCCCCCC
Q 027793           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPK-ISSCLETPSNQTRGNSYLP  152 (219)
Q Consensus        79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l~~lp~-~~~~~~~~~~~~~~~~~~l  152 (219)
                      ++|.++.+|.. +..+++|+.|++++|. ++.+|. .   +++|++|++++| .++.+|. .+..+           ..+
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-----------~~L  181 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRL-----------GKL  181 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-----------TTC
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCC-----------CCC
Confidence            99999877764 5788999999999864 455554 2   368999999886 4566654 23222           145


Q ss_pred             eEEEEcCCc
Q 027793          153 VMFKFVNCV  161 (219)
Q Consensus       153 ~~l~~~~c~  161 (219)
                      +.+++++++
T Consensus       182 ~~L~l~~N~  190 (251)
T 3m19_A          182 QTITLFGNQ  190 (251)
T ss_dssp             CEEECCSCC
T ss_pred             CEEEeeCCc
Confidence            588887763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.71  E-value=1.5e-17  Score=129.20  Aligned_cols=172  Identities=14%  Similarity=0.130  Sum_probs=129.3

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCC-ccccCCCCCCcEEeccc-cccc-cc-ccCCCCCCCCEE
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQ-CRCL-IL-SGLSSLSSLKCL   76 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~-~~~~-~p-~~~~~l~~L~~L   76 (219)
                      +++++|++++|+++.+|. .+..+++|++|++++|...+.+ +..+..+++|++|++++ |.+. ++ ..+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            468999999999999877 5889999999999999634444 44788999999999998 7766 44 567889999999


Q ss_pred             EecCCcCCccchhhhCCCCCC---EEeccCCCCCCcCCCC----CCCCC-eEeccCCcCCCcCCccccCCCCCccccCCC
Q 027793           77 ELSGHNFESLPTGISQLQRLK---CLHLINCNMIRSLPEL----PFCLN-YLNTSDCKRLQSLPKISSCLETPSNQTRGN  148 (219)
Q Consensus        77 ~l~~n~l~~lp~~l~~l~~L~---~L~l~~~~~l~~lp~~----~~~L~-~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~  148 (219)
                      ++++|.++.+|. +..+++|+   .|++++|..++.+|..    +++|+ .|++++| .++.+|......          
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~----------  178 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG----------  178 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT----------
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC----------
Confidence            999999999986 88888888   9999997466666643    46888 9999885 566777643322          


Q ss_pred             CCCCeEEEEcCCcccccccccchhHhH-HHHHhhhCCCcc
Q 027793          149 SYLPVMFKFVNCVKLHKGTERNFFANF-QRRVHNALPGIL  187 (219)
Q Consensus       149 ~~~l~~l~~~~c~~l~~~~~~~~~~~~-~~~~~~~lp~~~  187 (219)
                       ..++.+++++++.++..+. ..+..+ ..+...++.++.
T Consensus       179 -~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          179 -TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             -CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCC
T ss_pred             -CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCc
Confidence             1566889988866776644 233333 344444444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=7.5e-17  Score=136.54  Aligned_cols=131  Identities=23%  Similarity=0.329  Sum_probs=104.8

Q ss_pred             CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l   78 (219)
                      +++++|++++|.++.+ |..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            4688999999999986 455889999999999999777767778888999999999999876 44 45788899999999


Q ss_pred             cCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCc
Q 027793           79 SGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        79 ~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~  133 (219)
                      ++|.++.+|. .+.++++|+.|++++|+.++.++..    +++|+.|++++| .++.+|.
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~  213 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN  213 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc
Confidence            9999887765 5778888888888887777777642    467888888775 4555653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.71  E-value=2.9e-16  Score=125.00  Aligned_cols=173  Identities=18%  Similarity=0.164  Sum_probs=119.3

Q ss_pred             CCCccEEEeecCCCccc-CccccCCCCCcEEeccCCC-CCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEE
Q 027793            1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCT-KLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCL   76 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L   76 (219)
                      +++|++|++++|.++++ |..+..+++|++|++++|. +....|..+..+++|++|++++|.+.  .|..+..+++|++|
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            46789999999999886 5568889999999999986 44444677888999999999998876  45667888899999


Q ss_pred             EecCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCC
Q 027793           77 ELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYL  151 (219)
Q Consensus        77 ~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~  151 (219)
                      ++++|.++.++. .+..+++|++|++++|. ++.+|..    +++|++|++++|......|..+..+           ..
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----------~~  202 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL-----------GR  202 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-----------TT
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcccccCHhHccCc-----------cc
Confidence            999998887765 47788889999998864 4445432    3688888888865333335444432           13


Q ss_pred             CeEEEEcCCcccccccccchhHhHHHHHhhhCCCcc
Q 027793          152 PVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGIL  187 (219)
Q Consensus       152 l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~~  187 (219)
                      ++.++++++ .+...+. ..+..+..+...++.++.
T Consensus       203 L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          203 LMTLYLFAN-NLSALPT-EALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             CCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCSSC
T ss_pred             ccEeeCCCC-cCCcCCH-HHcccCcccCEEeccCCC
Confidence            446666665 3443332 233344444444555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=1e-16  Score=135.30  Aligned_cols=131  Identities=25%  Similarity=0.317  Sum_probs=98.9

Q ss_pred             CCccEEEeecCCCcccC-ccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l   78 (219)
                      +++++|++++|.++.++ ..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            46788888888888865 45888888888888888766666677888888888888888776 44 35778888888888


Q ss_pred             cCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCc
Q 027793           79 SGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        79 ~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~  133 (219)
                      ++|.++.++. .+..+++|+.|++++|+.+..++..    +++|++|++++| .++.+|.
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~  202 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN  202 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc
Confidence            8888886654 5677888888888887777766642    367777777775 4566653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.70  E-value=1e-16  Score=136.42  Aligned_cols=103  Identities=22%  Similarity=0.270  Sum_probs=55.1

Q ss_pred             CCCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.++.+ |..|..+++|++|++++|.+....+..+..+++|++|++++|.+.  .+..+..+++|++|+
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            35666777776666664 445666666666666666444333334556666666666666544  233444444555555


Q ss_pred             ecCCcCCcc-chhhhCCCCCCEEeccC
Q 027793           78 LSGHNFESL-PTGISQLQRLKCLHLIN  103 (219)
Q Consensus        78 l~~n~l~~l-p~~l~~l~~L~~L~l~~  103 (219)
                      +++|.++.+ +..+..+++|+.|++++
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~  161 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEK  161 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEES
T ss_pred             CCCCccceeChhhccCCCCCCEEECCC
Confidence            544444422 22344444444444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.70  E-value=6.9e-17  Score=128.08  Aligned_cols=123  Identities=28%  Similarity=0.301  Sum_probs=82.3

Q ss_pred             CccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEec
Q 027793            3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~   79 (219)
                      +|++|++++|.+++++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.  .+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            57778888887777665 4777778888888777655555556777777888888777765  33556677777777777


Q ss_pred             CCcCCccch-hhhCCCCCCEEeccCCCCCC-cCCCC---CCCCCeEeccCC
Q 027793           80 GHNFESLPT-GISQLQRLKCLHLINCNMIR-SLPEL---PFCLNYLNTSDC  125 (219)
Q Consensus        80 ~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~-~lp~~---~~~L~~L~l~~~  125 (219)
                      +|.++.++. .+..+++|++|++++|.... .+|..   +++|++|++++|
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence            777665544 46667777777777654332 23433   356777777665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=8.7e-17  Score=145.66  Aligned_cols=123  Identities=19%  Similarity=0.270  Sum_probs=87.3

Q ss_pred             CCCccEEEeecCCCcc------------------cCcccc--CCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccc
Q 027793            1 MELLQEIDLFLSGIKE------------------LPSSIE--HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR   60 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~   60 (219)
                      |++|++|++++|.++.                  +|..++  .+++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            5789999999999988                  888877  89999999999998888999889999999999999886


Q ss_pred             -cc---ccccC-------CCCCCCCEEEecCCcCCccch--hhhCCCCCCEEeccCCCCCCcCCCC--CCCCCeEeccC
Q 027793           61 -CL---ILSGL-------SSLSSLKCLELSGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSD  124 (219)
Q Consensus        61 -~~---~p~~~-------~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~  124 (219)
                       +.   +|..+       ..+++|+.|++++|.++.+|.  .++++++|+.|++++|... .+|..  +++|+.|++++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDY  604 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCS
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcC
Confidence             32   34332       333467777777766666666  6666666666666665432 45421  13444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.70  E-value=4.1e-16  Score=123.40  Aligned_cols=148  Identities=22%  Similarity=0.277  Sum_probs=110.9

Q ss_pred             CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.  .+..+..+++|++|+
T Consensus        60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  139 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS  139 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence            46789999999998888776 578899999999988766555556778899999999998876  345578889999999


Q ss_pred             ecCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCCCcCCcc-ccCCCCCccccCCCCCC
Q 027793           78 LSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPKI-SSCLETPSNQTRGNSYL  151 (219)
Q Consensus        78 l~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~~~~~~~  151 (219)
                      +++|.++.+|.. +..+++|+.|++++|. ++.++. .   +++|++|++++| .++.+|.. +..+           ..
T Consensus       140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-----------~~  206 (270)
T 2o6q_A          140 LGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSL-----------EK  206 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-----------TT
T ss_pred             CCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccc-----------cC
Confidence            999998877754 6888999999998864 444543 2   368899999886 56666653 2222           14


Q ss_pred             CeEEEEcCCc
Q 027793          152 PVMFKFVNCV  161 (219)
Q Consensus       152 l~~l~~~~c~  161 (219)
                      ++.+++++++
T Consensus       207 L~~L~l~~N~  216 (270)
T 2o6q_A          207 LKMLQLQENP  216 (270)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEEecCCC
Confidence            5577777764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=3.5e-16  Score=120.97  Aligned_cols=143  Identities=20%  Similarity=0.205  Sum_probs=102.2

Q ss_pred             ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEecCC
Q 027793            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLELSGH   81 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~~n   81 (219)
                      .+.++.+++.++.+|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|.+. +| ..+..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            3567777788888887553  77888888888777776777888888888888888876 44 44677888888888888


Q ss_pred             cCCccchh-hhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCcc-ccCCCCCccccCCCCCCCeEEE
Q 027793           82 NFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI-SSCLETPSNQTRGNSYLPVMFK  156 (219)
Q Consensus        82 ~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~~~~~~~l~~l~  156 (219)
                      .++.++.. +..+++|+.|++++|. +..+|..   +++|+.|++++| .++.+|.. +..+           ..++.++
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-----------~~L~~L~  165 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRL-----------SSLTHAY  165 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTC-----------TTCCEEE
T ss_pred             cCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccCHHHHhCC-----------CCCCEEE
Confidence            88877654 5778888888888754 5577754   367888888875 56666643 2222           1445777


Q ss_pred             EcCCc
Q 027793          157 FVNCV  161 (219)
Q Consensus       157 ~~~c~  161 (219)
                      +.+.+
T Consensus       166 l~~N~  170 (229)
T 3e6j_A          166 LFGNP  170 (229)
T ss_dssp             CTTSC
T ss_pred             eeCCC
Confidence            77653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=3.8e-16  Score=125.51  Aligned_cols=123  Identities=22%  Similarity=0.256  Sum_probs=57.1

Q ss_pred             CccEEEeecCCCcccCc--cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCEEE
Q 027793            3 LLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKCLE   77 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~L~   77 (219)
                      +|++|++++|.++.++.  .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.   .|..+..+++|++|+
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            34444444444443332  2344444444444444433333444444455555555555432   344455555555555


Q ss_pred             ecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCCc
Q 027793           78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCK  126 (219)
Q Consensus        78 l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~~  126 (219)
                      +++|.++.+ |..+..+++|+.|++++|.. ..++.    .+++|+.|++++|.
T Consensus       182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSC
T ss_pred             CCCCCcCCcCHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCC
Confidence            555555533 34455555555555555432 22222    12455555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=5.9e-17  Score=130.27  Aligned_cols=130  Identities=25%  Similarity=0.357  Sum_probs=76.2

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCc-cccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.++.+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.  .+..+..+++|++|++
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  157 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  157 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC
Confidence            45555666666555555556666666666666654433322 34556666666666666554  4445666667777777


Q ss_pred             cCCcCCc--cchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCC
Q 027793           79 SGHNFES--LPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        79 ~~n~l~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp  132 (219)
                      ++|.++.  +|..+..+++|++|++++|......|..   +++|++|++++|. ++.++
T Consensus       158 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~  215 (306)
T 2z66_A          158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLD  215 (306)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCC
T ss_pred             CCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccC
Confidence            7776653  5666666777777777765443333332   3567777776653 44443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.69  E-value=3.2e-17  Score=134.45  Aligned_cols=148  Identities=22%  Similarity=0.198  Sum_probs=104.8

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cccc-CCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSG-LSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~-~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.++++|. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|.. +..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            367888888888888766 5778888888888888666655667778888888888888766 4433 777888888888


Q ss_pred             cCCcCCccch--hhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCC
Q 027793           79 SGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLP  152 (219)
Q Consensus        79 ~~n~l~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l  152 (219)
                      ++|.++.+|.  .+..+++|++|++++|+.++.++. .   +++|++|++++|..-...|..+..+           ..+
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-----------~~L  200 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI-----------QNV  200 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC-----------SEE
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc-----------ccC
Confidence            8888887775  567788888888888755555542 2   3577888888765333334444433           145


Q ss_pred             eEEEEcCC
Q 027793          153 VMFKFVNC  160 (219)
Q Consensus       153 ~~l~~~~c  160 (219)
                      +.++++++
T Consensus       201 ~~L~l~~n  208 (353)
T 2z80_A          201 SHLILHMK  208 (353)
T ss_dssp             EEEEEECS
T ss_pred             CeecCCCC
Confidence            57777766

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.69  E-value=4.1e-16  Score=126.69  Aligned_cols=101  Identities=18%  Similarity=0.223  Sum_probs=69.6

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~   79 (219)
                      +++++|++++|.+++++. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|..+.  ++|++|+++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~  129 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH  129 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence            468889999998888766 5888899999999988777777888888899999999888765 443332  455555555


Q ss_pred             CCcCCccch-hhhCCCCCCEEeccCC
Q 027793           80 GHNFESLPT-GISQLQRLKCLHLINC  104 (219)
Q Consensus        80 ~n~l~~lp~-~l~~l~~L~~L~l~~~  104 (219)
                      +|.++.++. .+.++++|+.|++++|
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n  155 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTN  155 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred             CCcccccCHhHhcCCccccEEECCCC
Confidence            555554332 3444555555555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.69  E-value=1.8e-17  Score=146.14  Aligned_cols=136  Identities=16%  Similarity=0.274  Sum_probs=113.0

Q ss_pred             CCCccEEEeecCCCcc------------------cCcccc--CCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccc
Q 027793            1 MELLQEIDLFLSGIKE------------------LPSSIE--HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR   60 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~------------------lp~~~~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~   60 (219)
                      +++|++|++++|.++.                  +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            5789999999999999                  999988  99999999999999999999999999999999999997


Q ss_pred             -cc---ccccCCCC------CCCCEEEecCCcCCccch--hhhCCCCCCEEeccCCCCCCcCCCC--CCCCCeEeccCCc
Q 027793           61 -CL---ILSGLSSL------SSLKCLELSGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK  126 (219)
Q Consensus        61 -~~---~p~~~~~l------~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~~~  126 (219)
                       +.   +|..++.+      ++|++|++++|.++.+|.  .++++++|++|++++|...+.+|..  +++|+.|++++| 
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N-  363 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-  363 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS-
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC-
Confidence             53   67666665      899999999999999988  8899999999999987665577722  257777777775 


Q ss_pred             CCCcCCccccC
Q 027793          127 RLQSLPKISSC  137 (219)
Q Consensus       127 ~l~~lp~~~~~  137 (219)
                      .++.+|..+..
T Consensus       364 ~l~~lp~~l~~  374 (636)
T 4eco_A          364 QITEIPANFCG  374 (636)
T ss_dssp             EEEECCTTSEE
T ss_pred             ccccccHhhhh
Confidence            34466655443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=5.2e-16  Score=121.48  Aligned_cols=127  Identities=20%  Similarity=0.245  Sum_probs=107.7

Q ss_pred             CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|+
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            47899999999999997664 889999999999999877666677889999999999999887 44 4468899999999


Q ss_pred             ecCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCC
Q 027793           78 LSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRL  128 (219)
Q Consensus        78 l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l  128 (219)
                      +++|.++.+|. .+..+++|++|++++|.. +.+|. .   +++|+.|++++|+.-
T Consensus       138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CcCCcCCccCHHHcCcCcCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCcee
Confidence            99999998876 688999999999999754 45553 2   478999999997643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.68  E-value=4.2e-16  Score=131.52  Aligned_cols=129  Identities=22%  Similarity=0.324  Sum_probs=94.5

Q ss_pred             CCCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.++.++. .|..+++|++|++++|.+....+..+..+++|++|++++|.+. + +..+..+++|++|+
T Consensus        87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  166 (440)
T 3zyj_A           87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD  166 (440)
T ss_dssp             CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence            4688999999999988764 5888999999999998666555556888999999999998876 3 34577778888888


Q ss_pred             ecCCc-CCccch-hhhCCCCCCEEeccCCCCCCcCCCC--CCCCCeEeccCCcCCCcC
Q 027793           78 LSGHN-FESLPT-GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSL  131 (219)
Q Consensus        78 l~~n~-l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~~~~l~~l  131 (219)
                      +++|. ++.++. .+..+++|++|++++| .++.+|..  +++|+.|++++| .++.+
T Consensus       167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~  222 (440)
T 3zyj_A          167 LGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN-HLSAI  222 (440)
T ss_dssp             CCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-CCCEE
T ss_pred             CCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCC-ccCcc
Confidence            87744 555554 5677778888888775 44566643  357777777775 34443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.68  E-value=1e-16  Score=140.12  Aligned_cols=125  Identities=22%  Similarity=0.282  Sum_probs=67.8

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCc-cccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.++.+|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.  .|..+..+++|++|++
T Consensus       376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  455 (606)
T 3vq2_A          376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM  455 (606)
T ss_dssp             SCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             CcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence            44555555555555555555555556666665554444444 34555566666666665544  3445555566666666


Q ss_pred             cCCcCCc--cchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCc
Q 027793           79 SGHNFES--LPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK  126 (219)
Q Consensus        79 ~~n~l~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~  126 (219)
                      ++|.++.  +|..++.+++|+.|++++|...+..|..   +++|++|++++|.
T Consensus       456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence            6665552  4555555666666666655443333332   2456666666553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.68  E-value=1.2e-15  Score=116.07  Aligned_cols=125  Identities=26%  Similarity=0.360  Sum_probs=77.1

Q ss_pred             cEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEecCCc
Q 027793            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLELSGHN   82 (219)
Q Consensus         5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~~n~   82 (219)
                      +.++.+++.++.+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            45566666666666543  346777777777555444445666777777777777655 33 335667777777777777


Q ss_pred             CCccchh-hhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCc
Q 027793           83 FESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        83 l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~  133 (219)
                      ++.+|.. +..+++|++|++++|. ++.+|..    +++|++|++++| .++.+|.
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~  141 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD  141 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC-ccceeCH
Confidence            7766543 4667777777777654 3344431    356777777764 4455544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=5.8e-16  Score=119.10  Aligned_cols=142  Identities=25%  Similarity=0.267  Sum_probs=103.7

Q ss_pred             cEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecCCc
Q 027793            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHN   82 (219)
Q Consensus         5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~   82 (219)
                      +.++.++++++.+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+.  .|..+..+++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            467778888888887654  67888999888666555557888888999999988876  46778888889999999998


Q ss_pred             CCccchh-hhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCcc-ccCCCCCccccCCCCCCCeEEEE
Q 027793           83 FESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI-SSCLETPSNQTRGNSYLPVMFKF  157 (219)
Q Consensus        83 l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~~~~~~~l~~l~~  157 (219)
                      ++.+|.. +..+++|+.|++++|......|..   +++|+.|++++| .++.++.. +..+           ..++.+++
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-----------~~L~~L~L  159 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPL-----------RAIQTMHL  159 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC-----------TTCCEEEC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCC-----------CCCCEEEe
Confidence            8887765 577888999999886544433433   368888888885 46666543 3222           13457777


Q ss_pred             cCC
Q 027793          158 VNC  160 (219)
Q Consensus       158 ~~c  160 (219)
                      ++.
T Consensus       160 ~~N  162 (220)
T 2v9t_B          160 AQN  162 (220)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.68  E-value=8.4e-16  Score=123.98  Aligned_cols=125  Identities=22%  Similarity=0.311  Sum_probs=73.3

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n   81 (219)
                      ++|++|+++++.++.+| .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.....+..+++|++|++++|
T Consensus        41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST  117 (308)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS
T ss_pred             CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCC
Confidence            35666777766666665 3666667777777666433 3333 6666667777776666553335666666666666666


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCC
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp  132 (219)
                      .++.++. +..+++|+.|++++|. +..++.  .+++|++|++++| .++.++
T Consensus       118 ~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~  167 (308)
T 1h6u_A          118 QITDVTP-LAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNA-QVSDLT  167 (308)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS-CCCCCG
T ss_pred             CCCCchh-hcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCC-cCCCCh
Confidence            6665553 5666666666666643 333332  2345666666654 344444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=2.8e-16  Score=115.62  Aligned_cols=128  Identities=27%  Similarity=0.362  Sum_probs=101.1

Q ss_pred             CCccEEEeecCCCc--ccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793            2 ELLQEIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         2 ~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~   77 (219)
                      ++|++|++++|.++  .+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.  +|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            57889999999888  6888788889999999999875544  67888999999999999876  555566688999999


Q ss_pred             ecCCcCCccc--hhhhCCCCCCEEeccCCCCCCcCCC-------CCCCCCeEeccCCcCCCcCCc
Q 027793           78 LSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE-------LPFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        78 l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~-------~~~~L~~L~l~~~~~l~~lp~  133 (219)
                      +++|.++.+|  ..+..+++|+.|++++|. +..+|.       .+++|++|++++|. ..++|.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD  164 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence            9999988776  678888999999999865 445554       25788899988864 555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=6e-16  Score=118.98  Aligned_cols=157  Identities=15%  Similarity=0.166  Sum_probs=115.4

Q ss_pred             cEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCc-cccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEEecCC
Q 027793            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~l~~n   81 (219)
                      +.++++++.++++|..+.  ..+++|++++|.+.+..| ..+..+++|++|++++|.+. + +..+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            578999999999998654  457899999997665544 34788999999999999877 3 447899999999999999


Q ss_pred             cCCccch-hhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcC-CccccCCCCCccccCCCCCCCeEEE
Q 027793           82 NFESLPT-GISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSL-PKISSCLETPSNQTRGNSYLPVMFK  156 (219)
Q Consensus        82 ~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~l-p~~~~~~~~~~~~~~~~~~~l~~l~  156 (219)
                      .++.++. .+..+++|++|++++|......|..   +++|+.|++++| .++.+ |..+..+           ..++.++
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l-----------~~L~~L~  159 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTL-----------HSLSTLN  159 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTC-----------TTCCEEE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCC-----------CCCCEEE
Confidence            9997765 5788999999999997655444543   378999999986 45555 5555443           1455788


Q ss_pred             EcCCcccccccccchhHhHH
Q 027793          157 FVNCVKLHKGTERNFFANFQ  176 (219)
Q Consensus       157 ~~~c~~l~~~~~~~~~~~~~  176 (219)
                      +++. .+.-.+....+..|.
T Consensus       160 L~~N-~l~c~c~l~~l~~~~  178 (220)
T 2v70_A          160 LLAN-PFNCNCYLAWLGEWL  178 (220)
T ss_dssp             CCSC-CEECSGGGHHHHHHH
T ss_pred             ecCc-CCcCCCchHHHHHHH
Confidence            8776 444444433443333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.67  E-value=1.2e-15  Score=120.95  Aligned_cols=129  Identities=22%  Similarity=0.245  Sum_probs=107.7

Q ss_pred             CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.+++++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+. ++ ..+..+++|++|+
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  163 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD  163 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence            47899999999999997765 789999999999999877766667889999999999999876 43 4578999999999


Q ss_pred             ecCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCC
Q 027793           78 LSGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQ  129 (219)
Q Consensus        78 l~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~  129 (219)
                      +++|.++.++.. +..+++|+.|++++|...+..|..   +++|+.|++++|+...
T Consensus       164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence            999999977654 688999999999997655444432   4789999999985443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=6.6e-16  Score=116.64  Aligned_cols=123  Identities=17%  Similarity=0.148  Sum_probs=106.7

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL   78 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l   78 (219)
                      +++|++|++++|.++.++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.  .|..+..+++|++|++
T Consensus        65 l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           65 AHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             CTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            478999999999887776 4889999999999999887777888999999999999999987  4788999999999999


Q ss_pred             cCCc-CCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCc
Q 027793           79 SGHN-FESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCK  126 (219)
Q Consensus        79 ~~n~-l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~  126 (219)
                      ++|. ++.+| .+..+++|+.|++++|. +..++.  .+++|++|++++|+
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence            9998 88888 78999999999999975 455653  25789999999864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.67  E-value=7.4e-16  Score=130.45  Aligned_cols=125  Identities=24%  Similarity=0.293  Sum_probs=93.8

Q ss_pred             CCCccEEEeecCCCcccC-ccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.++.++ ..|..+++|++|++++|.+....+..+..+++|++|++++|.+. +| ..+..+++|++|+
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  177 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD  177 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence            468999999999999865 45888999999999998766555556888999999999999876 33 4577788888888


Q ss_pred             ecCCc-CCccch-hhhCCCCCCEEeccCCCCCCcCCCC--CCCCCeEeccCCc
Q 027793           78 LSGHN-FESLPT-GISQLQRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCK  126 (219)
Q Consensus        78 l~~n~-l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~~~  126 (219)
                      +++|. ++.++. .+..+++|+.|++++|+ +..+|..  +++|+.|++++|.
T Consensus       178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          178 LGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSC
T ss_pred             CCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCc
Confidence            88744 666654 46777888888888753 4555543  3577777777754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.67  E-value=7.9e-16  Score=124.13  Aligned_cols=127  Identities=18%  Similarity=0.287  Sum_probs=101.3

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~   80 (219)
                      +++|++|++++|.+++++. +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.....+..+++|++|++++
T Consensus        62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence            4789999999999999887 8899999999999986544 44 6888999999999999877333488889999999999


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCc
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~  133 (219)
                      |.++.++. +..+++|+.|++++|. +..++.  .+++|+.|++++| .++.++.
T Consensus       139 n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n-~l~~~~~  190 (308)
T 1h6u_A          139 NQITNISP-LAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDN-KISDISP  190 (308)
T ss_dssp             SCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG
T ss_pred             CccCcCcc-ccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCC-ccCcChh
Confidence            99887775 7888899999999864 444543  3468888888885 4566654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=1.4e-15  Score=121.70  Aligned_cols=146  Identities=24%  Similarity=0.214  Sum_probs=120.2

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL   78 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l   78 (219)
                      +++|++|++++|.++.++.. +.+++|++|++++|.+ +.+|..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus        54 l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L  131 (290)
T 1p9a_G           54 YTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (290)
T ss_dssp             CTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence            47899999999999998774 7899999999999854 578888899999999999999987 44 67899999999999


Q ss_pred             cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCe
Q 027793           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPV  153 (219)
Q Consensus        79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~  153 (219)
                      ++|.++.+|.. +..+++|+.|++++|. ++.+|..    +++|+.|++++| .++.+|..+...           ..++
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~-----------~~L~  198 (290)
T 1p9a_G          132 KGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGS-----------HLLP  198 (290)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-----------CCCS
T ss_pred             CCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhccc-----------ccCC
Confidence            99999988764 5789999999999964 5667653    478999999985 678888766544           1445


Q ss_pred             EEEEcCCc
Q 027793          154 MFKFVNCV  161 (219)
Q Consensus       154 ~l~~~~c~  161 (219)
                      .+.+.+.+
T Consensus       199 ~l~L~~Np  206 (290)
T 1p9a_G          199 FAFLHGNP  206 (290)
T ss_dssp             EEECCSCC
T ss_pred             eEEeCCCC
Confidence            77777653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.66  E-value=2.1e-16  Score=122.72  Aligned_cols=155  Identities=16%  Similarity=0.150  Sum_probs=121.4

Q ss_pred             CCCccEEEeecCC-CcccCc-cccCCCCCcEEeccC-CCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCC--
Q 027793            1 MELLQEIDLFLSG-IKELPS-SIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLK--   74 (219)
Q Consensus         1 l~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~--   74 (219)
                      +++|++|++++|. ++.++. .|..+++|++|++++ |.+.+..+..+..+++|++|++++|.+. +|. +..+++|+  
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L  132 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIF  132 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSE
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccc
Confidence            4789999999997 999876 589999999999998 7665555567889999999999999877 665 88888898  


Q ss_pred             -EEEecCC-cCCccch-hhhCCCCCC-EEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCccccCCCCCccccCC
Q 027793           75 -CLELSGH-NFESLPT-GISQLQRLK-CLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPKISSCLETPSNQTRG  147 (219)
Q Consensus        75 -~L~l~~n-~l~~lp~-~l~~l~~L~-~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~  147 (219)
                       +|++++| .++.+|. .+..+++|+ .|++++|. ++.+|...   ++|+.|++++|..++.+|...... .       
T Consensus       133 ~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~-l-------  203 (239)
T 2xwt_C          133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG-V-------  203 (239)
T ss_dssp             EEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTT-C-------
T ss_pred             cEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhc-c-------
Confidence             9999999 8998875 478999999 99999865 45777532   589999999986688876543221 1       


Q ss_pred             CCCCCeEEEEcCCccccccc
Q 027793          148 NSYLPVMFKFVNCVKLHKGT  167 (219)
Q Consensus       148 ~~~~l~~l~~~~c~~l~~~~  167 (219)
                       ...++.++++++ .++..+
T Consensus       204 -~~~L~~L~l~~N-~l~~l~  221 (239)
T 2xwt_C          204 -YSGPSLLDVSQT-SVTALP  221 (239)
T ss_dssp             -SBCCSEEECTTC-CCCCCC
T ss_pred             -ccCCcEEECCCC-ccccCC
Confidence             014558888775 555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.66  E-value=4.2e-16  Score=118.56  Aligned_cols=130  Identities=25%  Similarity=0.330  Sum_probs=106.9

Q ss_pred             CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            5799999999999998775 789999999999999776555556789999999999999876 44 44789999999999


Q ss_pred             cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCC
Q 027793           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp  132 (219)
                      ++|.++.++.. +..+++|++|++++|.. +.+|..    +++|++|++++|+.....|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             CCCcCcccCHhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            99999977764 68899999999999754 455542    4789999999986555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=2.5e-16  Score=127.05  Aligned_cols=109  Identities=22%  Similarity=0.215  Sum_probs=50.0

Q ss_pred             CCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----c--cccCCCCCCCCEEEecCCcCCccchh----hhCC
Q 027793           24 IEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----I--LSGLSSLSSLKCLELSGHNFESLPTG----ISQL   93 (219)
Q Consensus        24 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~--p~~~~~l~~L~~L~l~~n~l~~lp~~----l~~l   93 (219)
                      +++|++|++++|.+.+..+..++.+++|++|++++|.+.    +  +..+..+++|++|++++|.++.++..    +..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            444455555444443333444445555555555555432    1  11223455555555555555443331    2445


Q ss_pred             CCCCEEeccCCCCCCcCCCC------CCCCCeEeccCCcCCCcCCc
Q 027793           94 QRLKCLHLINCNMIRSLPEL------PFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        94 ~~L~~L~l~~~~~l~~lp~~------~~~L~~L~l~~~~~l~~lp~  133 (219)
                      ++|++|++++|......|..      +++|++|++++| .++.+|.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~  268 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPK  268 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCS
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhh
Confidence            55555555554433332321      135555555553 3444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.65  E-value=8.4e-16  Score=132.02  Aligned_cols=169  Identities=14%  Similarity=0.111  Sum_probs=115.1

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----ccccCCCCCCCCEEEe
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLEL   78 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l   78 (219)
                      +|+.|++++|.+..++. ...+++|++|++++|.+.+..|..++.+++|++|++++|.+.    +|..+..+++|++|++
T Consensus       303 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             ceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            35666666666555431 257788888888888777777888888888888888888875    4466788888888888


Q ss_pred             cCCcCCc-cchh-hhCCCCCCEEeccCCCCCCcCCCCC-CCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEE
Q 027793           79 SGHNFES-LPTG-ISQLQRLKCLHLINCNMIRSLPELP-FCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMF  155 (219)
Q Consensus        79 ~~n~l~~-lp~~-l~~l~~L~~L~l~~~~~l~~lp~~~-~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l  155 (219)
                      ++|.++. +|.. +..+++|++|++++|...+.+|..+ ++|+.|++++| .++.+|..+..+  +         .++.+
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l--~---------~L~~L  449 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKL--E---------ALQEL  449 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGC--T---------TCCEE
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcC--C---------CCCEE
Confidence            8888885 7764 6777888888888877666666554 58888888885 566777655533  1         34466


Q ss_pred             EEcCCcccccccccchhHhHHHHHhhhCCCc
Q 027793          156 KFVNCVKLHKGTERNFFANFQRRVHNALPGI  186 (219)
Q Consensus       156 ~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~  186 (219)
                      +++++ .++..+.. .+..+..+...++.++
T Consensus       450 ~L~~N-~l~~l~~~-~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          450 NVASN-QLKSVPDG-IFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             ECCSS-CCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred             ECCCC-cCCccCHH-HhccCCcccEEECcCC
Confidence            66665 45444432 2333333444444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.65  E-value=1.4e-15  Score=126.24  Aligned_cols=124  Identities=19%  Similarity=0.229  Sum_probs=65.0

Q ss_pred             CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l   78 (219)
                      +++++|+++++.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.  .|..++.+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            4455566666655555554 455556666666655444433445555566666666655544  2334555555666666


Q ss_pred             cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCC
Q 027793           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDC  125 (219)
Q Consensus        79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~  125 (219)
                      ++|.++.+|.. +.++++|++|++++|......|..   +++|++|++++|
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC
Confidence            66555555543 355555666666554332222221   245555555553

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.65  E-value=6.2e-15  Score=113.32  Aligned_cols=125  Identities=19%  Similarity=0.279  Sum_probs=107.3

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc-cCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-GLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-~~~~l~~L~~L~l   78 (219)
                      +++++|++++|.|+.++. .|..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|. .+..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            478999999999999876 5899999999999999887777889999999999999999987 554 4688999999999


Q ss_pred             cCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcC
Q 027793           79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKR  127 (219)
Q Consensus        79 ~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~  127 (219)
                      ++|.++.+ |..+..+++|+.|++++|.. +.++. .   +++|+.|++++|+.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcC-CEECHHHHhCCCCCCEEEeCCCCc
Confidence            99999966 56789999999999999654 44543 2   46899999998753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.65  E-value=8e-16  Score=133.54  Aligned_cols=151  Identities=17%  Similarity=0.111  Sum_probs=104.1

Q ss_pred             cCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----ccccCCCCCCCCEEEecCCcCCc-cchh-hhCCCC
Q 027793           22 EHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGHNFES-LPTG-ISQLQR   95 (219)
Q Consensus        22 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~-lp~~-l~~l~~   95 (219)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.    +|..+..+++|++|++++|.++. +|.. +..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            56788888888888777777888888888888888888765    34567888888888888888875 7754 567788


Q ss_pred             CCEEeccCCCCCCcCCCCC-CCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcCCcccccccccchhHh
Q 027793           96 LKCLHLINCNMIRSLPELP-FCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFAN  174 (219)
Q Consensus        96 L~~L~l~~~~~l~~lp~~~-~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~  174 (219)
                      |+.|++++|...+.+|..+ ++|+.|++++| .++.+|..+..+  +         .++.++++++ .++..+.. .+..
T Consensus       430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l--~---------~L~~L~L~~N-~l~~l~~~-~~~~  495 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHL--Q---------ALQELNVASN-QLKSVPDG-VFDR  495 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSS--C---------CCSEEECCSS-CCCCCCTT-STTT
T ss_pred             CCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCC--C---------CCCEEECCCC-CCCCCCHH-HHhc
Confidence            8888888877666666655 58888888875 677777665533  1         3346666554 44444432 2333


Q ss_pred             HHHHHhhhCCCc
Q 027793          175 FQRRVHNALPGI  186 (219)
Q Consensus       175 ~~~~~~~~lp~~  186 (219)
                      +..+...++.++
T Consensus       496 l~~L~~L~l~~N  507 (562)
T 3a79_B          496 LTSLQYIWLHDN  507 (562)
T ss_dssp             CTTCCCEECCSC
T ss_pred             CCCCCEEEecCC
Confidence            333444444444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.65  E-value=1.4e-15  Score=123.76  Aligned_cols=103  Identities=24%  Similarity=0.314  Sum_probs=77.9

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~   79 (219)
                      +++++|++++|.++++++ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|..+.  ++|++|+++
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~  131 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH  131 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence            467888888888888654 5888888888888888776666778888888888888888765 554443  677888888


Q ss_pred             CCcCCccch-hhhCCCCCCEEeccCCCC
Q 027793           80 GHNFESLPT-GISQLQRLKCLHLINCNM  106 (219)
Q Consensus        80 ~n~l~~lp~-~l~~l~~L~~L~l~~~~~  106 (219)
                      +|.++.+|. .+..+++|+.|++++|..
T Consensus       132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          132 DNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             SSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CCccCccCHhHhCCCccCCEEECCCCcc
Confidence            877776654 467777888888877654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.65  E-value=4e-16  Score=136.31  Aligned_cols=151  Identities=19%  Similarity=0.222  Sum_probs=126.1

Q ss_pred             CCCccEEEeecCCCcccCc--cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCE
Q 027793            1 MELLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKC   75 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~   75 (219)
                      +++|++|++++|.+.++++  .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.   .|..++.+++|+.
T Consensus       398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  477 (606)
T 3vq2_A          398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF  477 (606)
T ss_dssp             CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCE
Confidence            4789999999999998654  5889999999999999888888889999999999999999876   5778999999999


Q ss_pred             EEecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCC
Q 027793           76 LELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYL  151 (219)
Q Consensus        76 L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~  151 (219)
                      |++++|.++.+ |..+..+++|++|++++|+..+..|..   +++|+.|++++|. ++.+|..+...  +.        .
T Consensus       478 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l--~~--------~  546 (606)
T 3vq2_A          478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHF--PK--------S  546 (606)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGS--CT--------T
T ss_pred             EECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhh--cc--------c
Confidence            99999999855 667899999999999998766655654   4689999999974 77888875544  10        2


Q ss_pred             CeEEEEcCCcc
Q 027793          152 PVMFKFVNCVK  162 (219)
Q Consensus       152 l~~l~~~~c~~  162 (219)
                      ++.+++++++-
T Consensus       547 L~~l~l~~N~~  557 (606)
T 3vq2_A          547 LAFFNLTNNSV  557 (606)
T ss_dssp             CCEEECCSCCC
T ss_pred             CcEEEccCCCc
Confidence            55888888643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.64  E-value=2.4e-15  Score=131.61  Aligned_cols=105  Identities=17%  Similarity=0.206  Sum_probs=68.7

Q ss_pred             CCCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cccc-CCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSG-LSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~-~~~l~~L~~L~   77 (219)
                      +++|++|++++|.++.+++ .|+.+++|++|++++|.+.+..|..++.+++|++|++++|.+. +|.. ++.+++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            3567777777777777554 5677777777777777665555556667777777777777655 4433 46667777777


Q ss_pred             ecCCcCCccc-hhhhCCCCCCEEeccCCC
Q 027793           78 LSGHNFESLP-TGISQLQRLKCLHLINCN  105 (219)
Q Consensus        78 l~~n~l~~lp-~~l~~l~~L~~L~l~~~~  105 (219)
                      +++|.++.++ ..+..+++|++|++++|.
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            7777666443 346666666666666653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.64  E-value=2.1e-15  Score=125.13  Aligned_cols=123  Identities=18%  Similarity=0.181  Sum_probs=96.5

Q ss_pred             CCCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cccc-CCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSG-LSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~-~~~l~~L~~L~   77 (219)
                      +++|++|++++|.+++++. .+..+++|++|++++|.+.+..|..++.+++|++|++++|.+. +|.. +..+++|++|+
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence            4789999999999999765 6889999999999999877777777889999999999999876 5554 58899999999


Q ss_pred             ecCCcCCccc-hhhhCCCCCCEEeccCCCCCCcCC-CCCCCCCeEeccC
Q 027793           78 LSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLP-ELPFCLNYLNTSD  124 (219)
Q Consensus        78 l~~n~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~L~~L~l~~  124 (219)
                      +++|.++.++ ..+..+++|++|++++|... .++ ..+++|+.|++++
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSY  195 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCGGGCTTCSEEECCS
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCC-ccccccccccceeeccc
Confidence            9999998664 46888999999999986543 332 2234444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=4.2e-16  Score=112.43  Aligned_cols=119  Identities=28%  Similarity=0.344  Sum_probs=88.3

Q ss_pred             CCccEEEeecCCCc--ccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793            2 ELLQEIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         2 ~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~   77 (219)
                      ++|++|++++|.++  .+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.  +|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            46788888888887  5777778888888888888865544  56778888888888888765  555566678888888


Q ss_pred             ecCCcCCccc--hhhhCCCCCCEEeccCCCCCCcCCC----C---CCCCCeEecc
Q 027793           78 LSGHNFESLP--TGISQLQRLKCLHLINCNMIRSLPE----L---PFCLNYLNTS  123 (219)
Q Consensus        78 l~~n~l~~lp--~~l~~l~~L~~L~l~~~~~l~~lp~----~---~~~L~~L~l~  123 (219)
                      +++|.++.++  ..+..+++|++|++++|. +..+|.    .   +++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence            8888888654  677888888888888864 444544    1   3677777765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.64  E-value=4.5e-15  Score=118.79  Aligned_cols=118  Identities=28%  Similarity=0.298  Sum_probs=64.4

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCc
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN   82 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~   82 (219)
                      +|++|++++|.++.++. +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+..+..+..+++|++|++++|.
T Consensus        47 ~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~  123 (291)
T 1h6t_A           47 SIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG  123 (291)
T ss_dssp             TCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred             cccEEEccCCCcccChh-HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCc
Confidence            45666666666666543 5556666666666664433 332 55666666666666655533345556666666666666


Q ss_pred             CCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCC
Q 027793           83 FESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDC  125 (219)
Q Consensus        83 l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~  125 (219)
                      ++.++ .+..+++|+.|++++|. ++.++.  .+++|++|++++|
T Consensus       124 i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          124 ISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             CCCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSS
T ss_pred             CCCCh-hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCC
Confidence            55543 45555556666665543 222321  1245555555553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.64  E-value=1.3e-15  Score=133.19  Aligned_cols=129  Identities=28%  Similarity=0.309  Sum_probs=107.5

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l   78 (219)
                      +++++|++++|.|+.+|+ .|..+++|++|++++|.+.+..|.+|.++++|++|++++|.+. +| ..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            368999999999999876 5999999999999999776666667899999999999999876 44 56899999999999


Q ss_pred             cCCcCCccch-hhhCCCCCCEEeccCCCCCC-cCCCC---CCCCCeEeccCCcCCCcC
Q 027793           79 SGHNFESLPT-GISQLQRLKCLHLINCNMIR-SLPEL---PFCLNYLNTSDCKRLQSL  131 (219)
Q Consensus        79 ~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~-~lp~~---~~~L~~L~l~~~~~l~~l  131 (219)
                      ++|.++.+|. .++++++|++|++++|.... .+|..   +++|++|++++|. ++.+
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~  188 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI  188 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccc
Confidence            9999998875 58999999999999975433 34443   4789999999864 4444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.63  E-value=2.1e-14  Score=110.96  Aligned_cols=126  Identities=23%  Similarity=0.188  Sum_probs=107.0

Q ss_pred             CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.++.+ |..+..+++|++|++++|.+....+..+..+++|++|++++|.+. ++ ..+..+++|++|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            5799999999999996 556899999999999999765544456789999999999999887 44 45789999999999


Q ss_pred             cCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCC
Q 027793           79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRL  128 (219)
Q Consensus        79 ~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l  128 (219)
                      ++|.++.+|..+..+++|++|++++|. +..+|..    +++|+.|++++|+.-
T Consensus       120 s~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          120 CCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            999999999999999999999999964 5566632    478999999997643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.63  E-value=1.1e-15  Score=124.10  Aligned_cols=122  Identities=21%  Similarity=0.298  Sum_probs=83.1

Q ss_pred             CCCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.++++ |..+..+++|++|++++|.+ +.+|..+.  ++|++|++++|.+.  .+..+..+++|++|+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVE  151 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence            46789999999988886 66788889999999988854 45565443  67777777777665  234466677777777


Q ss_pred             ecCCcCC---ccchhhhCCCCCCEEeccCCCCCCcCCCC-CCCCCeEeccCCc
Q 027793           78 LSGHNFE---SLPTGISQLQRLKCLHLINCNMIRSLPEL-PFCLNYLNTSDCK  126 (219)
Q Consensus        78 l~~n~l~---~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~L~~L~l~~~~  126 (219)
                      +++|.++   ..+..+..+++|++|++++|. ++.+|.. .++|++|++++|.
T Consensus       152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~  203 (330)
T 1xku_A          152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNK  203 (330)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSC
T ss_pred             CCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCc
Confidence            7777765   334556667777777777643 3445543 2566666666653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.63  E-value=3.9e-15  Score=131.16  Aligned_cols=130  Identities=18%  Similarity=0.188  Sum_probs=62.3

Q ss_pred             CccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCC--------CCCCcEEeccccccc-ccccCC--CC
Q 027793            3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCN--------LKKLQKLCLSQCRCL-ILSGLS--SL   70 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~--------l~~L~~L~l~~~~~~-~p~~~~--~l   70 (219)
                      +|++|++++|.++.+|.. +..+++|++|++++|.+. .+|..+..        +++|++|++++|.+. +|..+.  .+
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l  512 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL  512 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC
T ss_pred             CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccC
Confidence            444555555555544443 233455555555555333 33332211        115555555555544 444443  55


Q ss_pred             CCCCEEEecCCcCCccchhhhCCCCCCEEecc------CCCCCCcCCCC---CCCCCeEeccCCcCCCcCCcc
Q 027793           71 SSLKCLELSGHNFESLPTGISQLQRLKCLHLI------NCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKI  134 (219)
Q Consensus        71 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~------~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~  134 (219)
                      ++|+.|++++|.++.+|..+..+++|+.|+++      +|+..+.+|..   +++|+.|++++|. ++.+|..
T Consensus       513 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~  584 (636)
T 4eco_A          513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK  584 (636)
T ss_dssp             TTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC
T ss_pred             CCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh
Confidence            55555555555555555555555555555553      23334444433   2455555555543 2555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.62  E-value=2.7e-15  Score=122.00  Aligned_cols=120  Identities=21%  Similarity=0.339  Sum_probs=79.6

Q ss_pred             CCCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.++.+ |..+..+++|++|++++|.+ ..+|..+.  ++|++|++++|.+. +| ..+..+++|+.|+
T Consensus        77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE  153 (332)
T ss_dssp             CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred             CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence            46788899998888886 55688888899999888854 45665544  67888888887765 33 3467777788888


Q ss_pred             ecCCcCC---ccchhhhCCCCCCEEeccCCCCCCcCCCC-CCCCCeEeccCC
Q 027793           78 LSGHNFE---SLPTGISQLQRLKCLHLINCNMIRSLPEL-PFCLNYLNTSDC  125 (219)
Q Consensus        78 l~~n~l~---~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~L~~L~l~~~  125 (219)
                      +++|.++   ..+..+..+ +|+.|++++|. ++.+|.. .++|++|++++|
T Consensus       154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n  203 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHN  203 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSS
T ss_pred             CCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCC
Confidence            8777765   234445554 66666666643 3334432 245555555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.62  E-value=2.1e-14  Score=110.29  Aligned_cols=129  Identities=15%  Similarity=0.137  Sum_probs=108.2

Q ss_pred             CCccEEEeecCCCcccCc--cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793            2 ELLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~   77 (219)
                      ..+++|++++|.++.++.  .|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.  .+..+..+++|++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            357899999999999743  3889999999999999777666668999999999999999987  445689999999999


Q ss_pred             ecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCc
Q 027793           78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQS  130 (219)
Q Consensus        78 l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~  130 (219)
                      +++|.++.+ |..+..+++|+.|++++|......|..   +++|+.|++++|+.-..
T Consensus       112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999999966 677899999999999997655444554   46899999999765433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.62  E-value=3e-15  Score=130.99  Aligned_cols=129  Identities=19%  Similarity=0.241  Sum_probs=101.5

Q ss_pred             CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l   78 (219)
                      .+++.++++++.+..+|.. +..+++|++|++++|.+.+..|..++.+++|++|++++|.+.  .|..++.+++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            5688899999888888876 677889999999988776666668888999999999998876  4456788899999999


Q ss_pred             cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcC
Q 027793           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSL  131 (219)
Q Consensus        79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~l  131 (219)
                      ++|.++.+|.. ++++++|++|++++|......|..   +++|++|++++|. ++.+
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~  186 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHV  186 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBC
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCc
Confidence            99998888765 488899999999987655444433   3678888888863 4443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.62  E-value=8.3e-16  Score=124.13  Aligned_cols=152  Identities=19%  Similarity=0.163  Sum_probs=115.6

Q ss_pred             CCCccEEEeecCCCcc-cCccc--cCCCCCcEEeccCCCCCCCCccccCCC-----CCCcEEeccccccc--ccccCCCC
Q 027793            1 MELLQEIDLFLSGIKE-LPSSI--EHIEGLKCLRLNSCTKLGFLPESLCNL-----KKLQKLCLSQCRCL--ILSGLSSL   70 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~-lp~~~--~~l~~L~~L~l~~~~~~~~~p~~~~~l-----~~L~~L~l~~~~~~--~p~~~~~l   70 (219)
                      +++|++|++++|.+++ +|..+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+.  .|..++.+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            4689999999999986 78775  8899999999999977666 7777766     89999999999987  44788999


Q ss_pred             CCCCEEEecCCcCCc---cchhh--hCCCCCCEEeccCCCCCCcCC---C----CCCCCCeEeccCCcCCCcCC-cc-cc
Q 027793           71 SSLKCLELSGHNFES---LPTGI--SQLQRLKCLHLINCNMIRSLP---E----LPFCLNYLNTSDCKRLQSLP-KI-SS  136 (219)
Q Consensus        71 ~~L~~L~l~~n~l~~---lp~~l--~~l~~L~~L~l~~~~~l~~lp---~----~~~~L~~L~l~~~~~l~~lp-~~-~~  136 (219)
                      ++|++|++++|++..   +|..+  ..+++|++|++++|.. +.++   .    .+++|++|++++|. ++..+ .. +.
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~  250 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD  250 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC-CCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC-cchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh
Confidence            999999999999763   45555  8899999999999754 4322   1    23799999999975 44433 21 11


Q ss_pred             CCCCCccccCCCCCCCeEEEEcCCccccccc
Q 027793          137 CLETPSNQTRGNSYLPVMFKFVNCVKLHKGT  167 (219)
Q Consensus       137 ~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~  167 (219)
                      .+           ..++.++++++ .++..+
T Consensus       251 ~l-----------~~L~~L~Ls~N-~l~~ip  269 (312)
T 1wwl_A          251 WP-----------SQLNSLNLSFT-GLKQVP  269 (312)
T ss_dssp             CC-----------TTCCEEECTTS-CCSSCC
T ss_pred             hc-----------CCCCEEECCCC-ccChhh
Confidence            11           15568888887 455544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.62  E-value=2.6e-15  Score=131.13  Aligned_cols=125  Identities=25%  Similarity=0.245  Sum_probs=76.5

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--cc-ccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--IL-SGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p-~~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.++++|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...  +| ..+..+++|++|++
T Consensus       278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  357 (606)
T 3t6q_A          278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL  357 (606)
T ss_dssp             TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred             cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence            5677777777777777777777777777777777655555556666666777776666543  22 23556666666666


Q ss_pred             cCCcCCcc---chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCc
Q 027793           79 SGHNFESL---PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCK  126 (219)
Q Consensus        79 ~~n~l~~l---p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~  126 (219)
                      ++|.++.+   +..+..+++|++|++++|......|..   +++|++|++++|.
T Consensus       358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            66666533   445566666666666665433333322   2456666665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.62  E-value=2.3e-15  Score=120.44  Aligned_cols=143  Identities=21%  Similarity=0.232  Sum_probs=116.8

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~   80 (219)
                      +++|++|++++|.+++++. +..+++|++|++++|.+.+ +| .+..+++|++|++++|.+.....+..+++|+.|++++
T Consensus        67 l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~  143 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN  143 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccC
Confidence            4789999999999999887 9999999999999996544 44 5889999999999999987446788899999999999


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEc
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFV  158 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~  158 (219)
                      |.++.+ ..+..+++|+.|++++|.. ..++.  .+++|++|++++| .++.+|. +..+           ..++.++++
T Consensus       144 n~l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~L~~N-~i~~l~~-l~~l-----------~~L~~L~l~  208 (291)
T 1h6t_A          144 NKITDI-TVLSRLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKN-HISDLRA-LAGL-----------KNLDVLELF  208 (291)
T ss_dssp             SCCCCC-GGGGGCTTCSEEECCSSCC-CCCGGGTTCTTCCEEECCSS-CCCBCGG-GTTC-----------TTCSEEEEE
T ss_pred             CcCCcc-hhhccCCCCCEEEccCCcc-ccchhhcCCCccCEEECCCC-cCCCChh-hccC-----------CCCCEEECc
Confidence            999988 4789999999999999754 44443  3479999999996 6777764 2222           155688887


Q ss_pred             CCc
Q 027793          159 NCV  161 (219)
Q Consensus       159 ~c~  161 (219)
                      +++
T Consensus       209 ~n~  211 (291)
T 1h6t_A          209 SQE  211 (291)
T ss_dssp             EEE
T ss_pred             CCc
Confidence            763

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.62  E-value=6.3e-15  Score=120.25  Aligned_cols=126  Identities=23%  Similarity=0.328  Sum_probs=96.0

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n   81 (219)
                      ++|++|+++++.+..++. +..+++|++|++++|.+. .++. +..+++|++|++++|.+...+.+..+++|++|++++|
T Consensus        44 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED  120 (347)
T ss_dssp             TTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTS
T ss_pred             ccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCC
Confidence            578888998888888875 788888999999888544 4444 7888889999998887764456888888888888888


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCC
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp  132 (219)
                      .++.++. +..+++|+.|++++|.....++.  .+++|++|++++|. +..++
T Consensus       121 ~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~  171 (347)
T 4fmz_A          121 NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVT  171 (347)
T ss_dssp             CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCG
T ss_pred             cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCch
Confidence            8887775 77888888888888766665553  24677777777753 44443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.62  E-value=6.5e-15  Score=128.66  Aligned_cols=104  Identities=25%  Similarity=0.241  Sum_probs=58.3

Q ss_pred             CCccEEEeecCCCccc---CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--cc-ccCCCCCCCCE
Q 027793            2 ELLQEIDLFLSGIKEL---PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--IL-SGLSSLSSLKC   75 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p-~~~~~l~~L~~   75 (219)
                      ++|++|++++|.++.+   +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.  .+ ..+..+++|+.
T Consensus       350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  429 (606)
T 3t6q_A          350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV  429 (606)
T ss_dssp             TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred             CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence            4566666666666653   444666666666666666555555555666666666666666543  12 22455555555


Q ss_pred             EEecCCcCCc-cchhhhCCCCCCEEeccCCC
Q 027793           76 LELSGHNFES-LPTGISQLQRLKCLHLINCN  105 (219)
Q Consensus        76 L~l~~n~l~~-lp~~l~~l~~L~~L~l~~~~  105 (219)
                      |++++|.++. .|..+..+++|++|++++|.
T Consensus       430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNH  460 (606)
T ss_dssp             EECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred             EECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence            5555555542 23344555555555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.62  E-value=1.7e-15  Score=130.86  Aligned_cols=136  Identities=21%  Similarity=0.219  Sum_probs=108.7

Q ss_pred             CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.++++ |..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.  .|..++.+++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            4789999999999886 456889999999999999777777778889999999999999876  3445889999999999


Q ss_pred             cCCcCCc--cchhhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCCCcCCccccC
Q 027793           79 SGHNFES--LPTGISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPKISSC  137 (219)
Q Consensus        79 ~~n~l~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l~~lp~~~~~  137 (219)
                      ++|.++.  .|..++++++|++|++++|...+.+|. .   +++|++|++++|..-...|..+..
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  170 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS  170 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence            9999874  466788899999999999876776663 2   468889999887654445655543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.62  E-value=1.1e-14  Score=123.94  Aligned_cols=130  Identities=25%  Similarity=0.268  Sum_probs=96.8

Q ss_pred             CCccEEEeecCCCcccC-ccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l   78 (219)
                      +++++|++++|.++.++ ..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            46788888888888864 45888888888888888776666778888888888888888766 44 34678888888888


Q ss_pred             cCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCC
Q 027793           79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        79 ~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp  132 (219)
                      ++|.++.+ +..+..+++|+.|++++|......+..   +++|++|++++| .++.+|
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~  168 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIP  168 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccC
Confidence            88888744 557788888888888886544333322   357788888775 344444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.61  E-value=4e-15  Score=128.88  Aligned_cols=123  Identities=24%  Similarity=0.351  Sum_probs=61.6

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCc-cccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEec
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~   79 (219)
                      +|++|++++|.+..+|..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+.  .|..+..+++|++|+++
T Consensus       374 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  453 (570)
T 2z63_A          374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  453 (570)
T ss_dssp             CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence            4444444444444444444445555555555544333322 23445555555555555443  34445555556666666


Q ss_pred             CCcCC--ccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCC
Q 027793           80 GHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDC  125 (219)
Q Consensus        80 ~n~l~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~  125 (219)
                      +|.++  .+|..+..+++|+.|++++|...+..|..   +++|++|++++|
T Consensus       454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  504 (570)
T 2z63_A          454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN  504 (570)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence            55554  35555555566666666655443333432   245566666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.61  E-value=6.1e-15  Score=124.51  Aligned_cols=163  Identities=17%  Similarity=0.095  Sum_probs=108.6

Q ss_pred             CCccEEEeecCCCccc----------C-cccc--CCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--cccc
Q 027793            2 ELLQEIDLFLSGIKEL----------P-SSIE--HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSG   66 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~l----------p-~~~~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~   66 (219)
                      ++|+.|++++|.+...          . ..+.  ..++|++|++++|.+.+..|..+..+++|++|++++|.+.  .|..
T Consensus       239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  318 (455)
T 3v47_A          239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA  318 (455)
T ss_dssp             CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred             cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence            5678888887643321          1 1122  2357888888888777777777888888888888888876  4567


Q ss_pred             CCCCCCCCEEEecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccc-cCCCCC
Q 027793           67 LSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKIS-SCLETP  141 (219)
Q Consensus        67 ~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~-~~~~~~  141 (219)
                      +..+++|++|++++|.++.+ |..+..+++|++|++++|......|..   +++|++|++++| .++.+|... ..+   
T Consensus       319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l---  394 (455)
T 3v47_A          319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRL---  394 (455)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTC---
T ss_pred             hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccC---
Confidence            88888888888888888755 566788888888888887654444543   367888888885 566666533 222   


Q ss_pred             ccccCCCCCCCeEEEEcCCcccccccccchhHhHH
Q 027793          142 SNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQ  176 (219)
Q Consensus       142 ~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~  176 (219)
                              ..++.+++++++---..+...++..|.
T Consensus       395 --------~~L~~L~l~~N~l~~~~~~~~~l~~~l  421 (455)
T 3v47_A          395 --------TSLQKIWLHTNPWDCSCPRIDYLSRWL  421 (455)
T ss_dssp             --------TTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred             --------CcccEEEccCCCcccCCCcchHHHHHH
Confidence                    145578887764333333234444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.61  E-value=5.8e-15  Score=124.63  Aligned_cols=77  Identities=18%  Similarity=0.136  Sum_probs=38.6

Q ss_pred             CCCcEEeccccccc--ccccCCCCCCCCEEEecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEec
Q 027793           49 KKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNT  122 (219)
Q Consensus        49 ~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l  122 (219)
                      ++|++|++++|.+.  .|..+..+++|++|++++|.++.+ |..+..+++|++|++++|...+..|..   +++|++|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            34555555555544  344455555555555555555533 334555555555555554332222221   345555555


Q ss_pred             cCC
Q 027793          123 SDC  125 (219)
Q Consensus       123 ~~~  125 (219)
                      ++|
T Consensus       355 s~N  357 (455)
T 3v47_A          355 SYN  357 (455)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.61  E-value=2.7e-15  Score=129.51  Aligned_cols=122  Identities=25%  Similarity=0.326  Sum_probs=82.8

Q ss_pred             CCccEEEeecCCCcccCccc-cCCCCCcEEeccCCCCCCCCcc---ccCCCCCCcEEeccccccc-cc---ccCCCCCCC
Q 027793            2 ELLQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPE---SLCNLKKLQKLCLSQCRCL-IL---SGLSSLSSL   73 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~~p~---~~~~l~~L~~L~l~~~~~~-~p---~~~~~l~~L   73 (219)
                      .+|+.|++++|.++.+|..+ ..+++|++|++++|.+.+..|.   .++.+++|++|++++|.+. ++   ..+..+++|
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L  389 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL  389 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred             ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence            46788888888888888765 4688888888888876655532   3567778888888888765 22   346677777


Q ss_pred             CEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC-CCCCCeEeccC
Q 027793           74 KCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL-PFCLNYLNTSD  124 (219)
Q Consensus        74 ~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~-~~~L~~L~l~~  124 (219)
                      ++|++++|.++.+|..+..+++|++|++++|. ++.+|.. +++|+.|++++
T Consensus       390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~  440 (549)
T 2z81_A          390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSN  440 (549)
T ss_dssp             CEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCS
T ss_pred             CEEECCCCCCccCChhhcccccccEEECCCCC-cccccchhcCCceEEECCC
Confidence            88888877777777777777777777777754 3444432 23444444444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.61  E-value=7.5e-16  Score=124.64  Aligned_cols=171  Identities=16%  Similarity=0.044  Sum_probs=103.2

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc--------------
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS--------------   65 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~--------------   65 (219)
                      ++|++|++++|.++.+++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+. ++.              
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l  111 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence            478999999999999764 58899999999999987655443  788899999999988765 110              


Q ss_pred             ---cCCCCCCCCEEEecCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCCcCCCcCCccccC
Q 027793           66 ---GLSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLPKISSC  137 (219)
Q Consensus        66 ---~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~~~l~~lp~~~~~  137 (219)
                         ....+++|++|++++|.++.++. .+..+++|++|++++|......+.    .+++|++|++++| .++.++.....
T Consensus       112 ~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l  190 (317)
T 3o53_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVF  190 (317)
T ss_dssp             SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCC
T ss_pred             CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccccccc
Confidence               01224556666666666664433 455666666666666543332222    1356666666664 34444332211


Q ss_pred             CCCCccccCCCCCCCeEEEEcCCcccccccccchhHhHHHHHhhhCCCccccc
Q 027793          138 LETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRK  190 (219)
Q Consensus       138 ~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~~~~~  190 (219)
                                  ..++.++++++ .++..+..  +..+..+...++.++....
T Consensus       191 ------------~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          191 ------------AKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             ------------TTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCCE
T ss_pred             ------------ccCCEEECCCC-cCCcchhh--hcccCcccEEECcCCcccc
Confidence                        14456667665 44444331  3344455555555554333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.61  E-value=1.3e-14  Score=114.87  Aligned_cols=107  Identities=23%  Similarity=0.270  Sum_probs=88.7

Q ss_pred             CCCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. + +..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            4689999999999988765 5888999999999998776666677888999999999998876 3 33588889999999


Q ss_pred             ecCCcCCc--cchhhhCCCCCCEEeccCCCCC
Q 027793           78 LSGHNFES--LPTGISQLQRLKCLHLINCNMI  107 (219)
Q Consensus        78 l~~n~l~~--lp~~l~~l~~L~~L~l~~~~~l  107 (219)
                      +++|.++.  +|..+..+++|++|++++|...
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            99999875  6888888999999999986543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=6.1e-15  Score=110.98  Aligned_cols=123  Identities=21%  Similarity=0.191  Sum_probs=100.5

Q ss_pred             ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCcc-ccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~   80 (219)
                      -+++++++++++++|..+..  ++++|++++|.+.+..+. .+..+++|++|++++|.+.  .|..+..+++|++|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            36889999999999986643  899999999966555443 3889999999999999887  477899999999999999


Q ss_pred             CcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCC
Q 027793           81 HNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRL  128 (219)
Q Consensus        81 n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l  128 (219)
                      |.++.++. .+..+++|++|++++|...+..|..   +++|++|++++|+.-
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            99996654 5788999999999997766555654   468999999887543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.61  E-value=5.9e-15  Score=121.52  Aligned_cols=130  Identities=21%  Similarity=0.197  Sum_probs=100.1

Q ss_pred             CCccEEEeecCCCcccCcc-cc-CCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEE
Q 027793            2 ELLQEIDLFLSGIKELPSS-IE-HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLE   77 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~   77 (219)
                      +.+++|++++|.|+.++.. +. .+++|++|++++|.+.+..+..+..+++|++|++++|.+. + +..+..+++|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            3578888888888887665 55 7888999999888766666667888889999999988876 3 34578888899999


Q ss_pred             ecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC-------CCCCCeEeccCCcCCCcCCc
Q 027793           78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL-------PFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        78 l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~-------~~~L~~L~l~~~~~l~~lp~  133 (219)
                      +++|.++.+ |..+..+++|+.|++++| .+..+|..       +++|+.|++++| .++.+|.
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~  180 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPL  180 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCH
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCH
Confidence            999988865 567888889999999885 45556632       468888898885 5666663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.61  E-value=1.1e-14  Score=131.96  Aligned_cols=145  Identities=14%  Similarity=0.159  Sum_probs=103.4

Q ss_pred             CccEEEeecCCCcccCccc-cCCCCCcEEeccCCCCCCCCccccCCC--------CCCcEEeccccccc-ccccCC--CC
Q 027793            3 LLQEIDLFLSGIKELPSSI-EHIEGLKCLRLNSCTKLGFLPESLCNL--------KKLQKLCLSQCRCL-ILSGLS--SL   70 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~~~~~p~~~~~l--------~~L~~L~l~~~~~~-~p~~~~--~l   70 (219)
                      +|+.|++++|.++.+|..+ ..+++|+.|++++|.+. .+|..+...        ++|+.|++++|.+. +|..+.  .+
T Consensus       674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l  752 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL  752 (876)
T ss_dssp             CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC
T ss_pred             CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccC
Confidence            6777777777777777764 46788888888887554 566544332        37888888888766 677766  78


Q ss_pred             CCCCEEEecCCcCCccchhhhCCCCCCEEeccC------CCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCC
Q 027793           71 SSLKCLELSGHNFESLPTGISQLQRLKCLHLIN------CNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETP  141 (219)
Q Consensus        71 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~------~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~  141 (219)
                      ++|+.|++++|.++.+|..+..+++|+.|++++      |+..+.+|..   +++|+.|++++|.. +.+|..+. .   
T Consensus       753 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~---  827 (876)
T 4ecn_A          753 PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-P---  827 (876)
T ss_dssp             TTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-S---
T ss_pred             CCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-C---
Confidence            888888888888887887888888888888865      4455666654   36788888888654 77776543 1   


Q ss_pred             ccccCCCCCCCeEEEEcCCcc
Q 027793          142 SNQTRGNSYLPVMFKFVNCVK  162 (219)
Q Consensus       142 ~~~~~~~~~~l~~l~~~~c~~  162 (219)
                               .++.+++++|+-
T Consensus       828 ---------~L~~LdLs~N~l  839 (876)
T 4ecn_A          828 ---------QLYILDIADNPN  839 (876)
T ss_dssp             ---------SSCEEECCSCTT
T ss_pred             ---------CCCEEECCCCCC
Confidence                     455788888753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=9.2e-15  Score=110.16  Aligned_cols=119  Identities=25%  Similarity=0.292  Sum_probs=99.6

Q ss_pred             cEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecCCc
Q 027793            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHN   82 (219)
Q Consensus         5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~   82 (219)
                      ++++++++.++.+|..+.  ++|++|++++|.+ ..+|..+..+++|++|++++|.+.  .+..+..+++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            578899999999998653  6899999999855 577888999999999999999987  44568999999999999999


Q ss_pred             CCccch-hhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcC
Q 027793           83 FESLPT-GISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKR  127 (219)
Q Consensus        83 l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~  127 (219)
                      ++.++. .+..+++|+.|++++|. ++.+|..    +++|+.|++++|+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence            997764 68899999999999965 5566642    46899999998754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=1.8e-14  Score=113.64  Aligned_cols=123  Identities=21%  Similarity=0.264  Sum_probs=98.8

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~   79 (219)
                      +++|++|++++|.++++| .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+. +|. +.. ++|++|+++
T Consensus        40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L~L~  114 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNG-IPS-ACLSRLFLD  114 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTT-CCC-SSCCEEECC
T ss_pred             cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCc-ccc-CcccEEEcc
Confidence            367899999999999988 58889999999999986544 454 889999999999999876 443 333 889999999


Q ss_pred             CCcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcC
Q 027793           80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSL  131 (219)
Q Consensus        80 ~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~l  131 (219)
                      +|.++.++ .+..+++|+.|++++|. ++.++.  .+++|+.|++++| .++.+
T Consensus       115 ~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N-~i~~~  165 (263)
T 1xeu_A          115 NNELRDTD-SLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGN-EITNT  165 (263)
T ss_dssp             SSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTS-CCCBC
T ss_pred             CCccCCCh-hhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCC-cCcch
Confidence            99998876 58889999999999864 555553  2478999999886 45555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.59  E-value=1.2e-15  Score=130.59  Aligned_cols=170  Identities=16%  Similarity=0.044  Sum_probs=107.2

Q ss_pred             CCccEEEeecCCCcccC-ccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc--------------
Q 027793            2 ELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS--------------   65 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~--------------   65 (219)
                      ++|++|++++|.++.++ ..++.+++|++|++++|.+.+..|  +..+++|++|++++|.+. +|.              
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence            47999999999999976 468999999999999997665544  888999999999998765 211              


Q ss_pred             ---cCCCCCCCCEEEecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCccccC
Q 027793           66 ---GLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPKISSC  137 (219)
Q Consensus        66 ---~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~~~~~  137 (219)
                         ....+++|+.|++++|.++.+ |..++.+++|+.|++++|......|..    +++|+.|++++|. ++.+|.....
T Consensus       112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l  190 (487)
T 3oja_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVF  190 (487)
T ss_dssp             CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCC
T ss_pred             CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccccC
Confidence               012345666666666666644 445666677777777776544433322    3567777776643 4444332221


Q ss_pred             CCCCccccCCCCCCCeEEEEcCCcccccccccchhHhHHHHHhhhCCCcccc
Q 027793          138 LETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHR  189 (219)
Q Consensus       138 ~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~~~~  189 (219)
                                  ..++.++++++ .+...+..  +..+..+...++.++...
T Consensus       191 ------------~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          191 ------------AKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             ------------TTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSCCC
T ss_pred             ------------CCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCcCc
Confidence                        14556777665 45544332  334445555555554433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.59  E-value=1.4e-14  Score=122.93  Aligned_cols=123  Identities=22%  Similarity=0.249  Sum_probs=89.2

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~   80 (219)
                      +++|++|++++|.++++| .++.+++|++|++++|.+.+ +|  ++.+++|++|++++|.+... .++.+++|++|++++
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~  115 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDT  115 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCC
Confidence            367888888888888887 48888888888888886554 34  77888888888888876622 277788888888888


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCC-CCCCCCCeEeccCCcCCCcC
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLP-ELPFCLNYLNTSDCKRLQSL  131 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~L~~L~l~~~~~l~~l  131 (219)
                      |.++.+|  ++.+++|++|++++|.. +.++ ...++|++|++++|..++.+
T Consensus       116 N~l~~l~--~~~l~~L~~L~l~~N~l-~~l~l~~l~~L~~L~l~~n~~~~~~  164 (457)
T 3bz5_A          116 NKLTKLD--VSQNPLLTYLNCARNTL-TEIDVSHNTQLTELDCHLNKKITKL  164 (457)
T ss_dssp             SCCSCCC--CTTCTTCCEEECTTSCC-SCCCCTTCTTCCEEECTTCSCCCCC
T ss_pred             CcCCeec--CCCCCcCCEEECCCCcc-ceeccccCCcCCEEECCCCCccccc
Confidence            8887765  67778888888887543 3343 22456777777776555554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.59  E-value=1.6e-14  Score=126.46  Aligned_cols=125  Identities=24%  Similarity=0.288  Sum_probs=63.8

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n   81 (219)
                      ++|+.|++++|.++++++ +..+++|+.|++++|.+.+ +| .+..+++|++|++++|.+.....+..+++|+.|++++|
T Consensus        65 ~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N  141 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN  141 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSS
T ss_pred             CCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCC
Confidence            455555555555555544 5555555555555553322 22 45555555555555555443334555555556666555


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCC-CCCCCCCeEeccCCcCCCcC
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLP-ELPFCLNYLNTSDCKRLQSL  131 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp-~~~~~L~~L~l~~~~~l~~l  131 (219)
                      .++.+ ..+..+++|+.|++++|......| ..+++|+.|++++| .++.+
T Consensus       142 ~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~l  190 (605)
T 1m9s_A          142 KITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDL  190 (605)
T ss_dssp             CCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBC
T ss_pred             ccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCC-CCCCC
Confidence            55554 345555566666665543322222 11345666666554 34444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=5.1e-15  Score=109.77  Aligned_cols=121  Identities=17%  Similarity=0.176  Sum_probs=77.3

Q ss_pred             CCccEEEeecCCCcccCccccCCC-CCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cccc-CCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIE-GLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSG-LSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~-~~~l~~L~~L~l   78 (219)
                      .+|++|++++|.++.+|. +..+. +|++|++++|.+.+.  ..+..+++|++|++++|.+. +|.. +..+++|++|++
T Consensus        19 ~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L   95 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   95 (176)
T ss_dssp             TSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence            456777777777777654 44443 777777777754433  45667777777777777665 4433 366677777777


Q ss_pred             cCCcCCccch--hhhCCCCCCEEeccCCCCCCcCCCC-------CCCCCeEeccCCc
Q 027793           79 SGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL-------PFCLNYLNTSDCK  126 (219)
Q Consensus        79 ~~n~l~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~-------~~~L~~L~l~~~~  126 (219)
                      ++|.++.+|.  .+..+++|+.|++++|.. ..+|..       +++|+.|++++|.
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence            7777776665  566777777777777543 345542       3566666666543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=4.2e-15  Score=121.86  Aligned_cols=133  Identities=15%  Similarity=0.169  Sum_probs=93.5

Q ss_pred             CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCcc-ccCCCCCCcE-Eeccccccc--ccccCCCCCCCCEE
Q 027793            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPE-SLCNLKKLQK-LCLSQCRCL--ILSGLSSLSSLKCL   76 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~-L~l~~~~~~--~p~~~~~l~~L~~L   76 (219)
                      +++++|++++|+|+.+|.. |..+++|++|++++|.+.+.+|. .|.++++++. +.+..|.+.  .|..+..+++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            4688999999999998874 78899999999999877776654 5677888765 445556655  35678889999999


Q ss_pred             EecCCcCCccch-hhhCCCCCCEEeccCCCCCCcCCCC-----CCCCCeEeccCCcCCCcCCccc
Q 027793           77 ELSGHNFESLPT-GISQLQRLKCLHLINCNMIRSLPEL-----PFCLNYLNTSDCKRLQSLPKIS  135 (219)
Q Consensus        77 ~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~~-----~~~L~~L~l~~~~~l~~lp~~~  135 (219)
                      ++++|.++.+|. .+....++..+++.+++.+..+|..     ...++.|++++| .++.+|...
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~  173 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSA  173 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTS
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhh
Confidence            999998886664 3344556667777666666655532     134666777663 455665443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.58  E-value=1.3e-14  Score=128.46  Aligned_cols=130  Identities=18%  Similarity=0.179  Sum_probs=109.0

Q ss_pred             CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc-cCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-GLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-~~~~l~~L~~L~l   78 (219)
                      +++++|++++|.++.+|.. |.++++|++|++++|.+.+..|..++++++|++|++++|.+. +|. .+..+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            4789999999999998764 899999999999999888878888899999999999999876 554 5889999999999


Q ss_pred             cCCcCCccc-hhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCC
Q 027793           79 SGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        79 ~~n~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp  132 (219)
                      ++|.++.++ ..++++++|++|++++|......|..   +++|++|++++|. ++.++
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~  161 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALK  161 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccC
Confidence            999998776 57899999999999998765555543   4689999999864 44444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=1.3e-14  Score=126.17  Aligned_cols=116  Identities=18%  Similarity=0.145  Sum_probs=93.4

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n   81 (219)
                      .|++|++++|.++++|. ++.+++|+.|++++|.+. .+|..++.+++|++|++++|.+. +| .++.+++|+.|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence            57889999999988887 888999999999988554 78888889999999999999877 66 7888999999999999


Q ss_pred             cCCcc--chhhhCCCCCCEEeccCCCCCCcCCCC------CCCCCeEe
Q 027793           82 NFESL--PTGISQLQRLKCLHLINCNMIRSLPEL------PFCLNYLN  121 (219)
Q Consensus        82 ~l~~l--p~~l~~l~~L~~L~l~~~~~l~~lp~~------~~~L~~L~  121 (219)
                      .++.+  |..++.+++|+.|++++|+..+..|..      +++|+.|+
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            98876  788888999999999986543333322      35666664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=3.7e-16  Score=139.54  Aligned_cols=109  Identities=25%  Similarity=0.239  Sum_probs=76.2

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~   80 (219)
                      ++|+.|++++|.+..+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. +|..++.+++|++|++++
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~  302 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD  302 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS
T ss_pred             CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC
Confidence            4567777777777777766667777777777777544 66666777777777777777765 666677777777777777


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCC
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLP  111 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp  111 (219)
                      |.++.+|..++.+++|+.|+|++|...+.+|
T Consensus       303 N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p  333 (727)
T 4b8c_D          303 NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL  333 (727)
T ss_dssp             SCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred             CCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence            7777777777777777777777765544333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.57  E-value=3.1e-14  Score=120.83  Aligned_cols=122  Identities=19%  Similarity=0.135  Sum_probs=101.6

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~   79 (219)
                      +++|++|++++|.++++|  ++.+++|++|++++|.+.+ ++  ++.+++|++|++++|.+. +|  ++.+++|++|+++
T Consensus        63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~  135 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCA  135 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred             cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECC
Confidence            478999999999999986  8899999999999997655 44  889999999999999876 43  7889999999999


Q ss_pred             CCcCCccchhhhCCCCCCEEeccCCCCCCcCCC-CCCCCCeEeccCCcCCCcCC
Q 027793           80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPE-LPFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        80 ~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-~~~~L~~L~l~~~~~l~~lp  132 (219)
                      +|.++.++  ++.+++|+.|++++|..++.++- .+++|+.|++++| .++.+|
T Consensus       136 ~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~  186 (457)
T 3bz5_A          136 RNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELD  186 (457)
T ss_dssp             TSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCC
T ss_pred             CCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceec
Confidence            99998875  77889999999999877776642 3478888888885 466665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.57  E-value=1.8e-14  Score=127.54  Aligned_cols=124  Identities=23%  Similarity=0.192  Sum_probs=80.5

Q ss_pred             CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.++++ |..++.+++|++|++++|.+.+..+..++.+++|++|++++|.+. + |..++.+++|++|++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            5677777777777774 444677777777777777554433335777777777777777665 3 355677777777777


Q ss_pred             cCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCC-----CCCCCCeEeccCC
Q 027793           79 SGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSDC  125 (219)
Q Consensus        79 ~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~-----~~~~L~~L~l~~~  125 (219)
                      ++|.++.. |..++++++|++|++++|......+.     ..++|++|++++|
T Consensus       129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred             CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence            77777633 44566777777777777543322221     1246777777665

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.57  E-value=4.9e-15  Score=119.42  Aligned_cols=131  Identities=18%  Similarity=0.197  Sum_probs=104.8

Q ss_pred             CCCccEEEeecCCCcccC-ccccCCCCCcEEeccCCCCCCC--Cc--cccCCCCCCcEEeccccccc-ccc----cCCCC
Q 027793            1 MELLQEIDLFLSGIKELP-SSIEHIEGLKCLRLNSCTKLGF--LP--ESLCNLKKLQKLCLSQCRCL-ILS----GLSSL   70 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~~~~--~p--~~~~~l~~L~~L~l~~~~~~-~p~----~~~~l   70 (219)
                      +++|++|++++|.+..++ ..++.+++|++|++++|.+.+.  ++  ..+..+++|++|++++|.+. ++.    .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            468999999999999866 4588999999999999976542  22  23468999999999999986 232    24678


Q ss_pred             CCCCEEEecCCcCCcc-chhhhCC---CCCCEEeccCCCCCCcCCCC-CCCCCeEeccCCcCCCcCCc
Q 027793           71 SSLKCLELSGHNFESL-PTGISQL---QRLKCLHLINCNMIRSLPEL-PFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        71 ~~L~~L~l~~n~l~~l-p~~l~~l---~~L~~L~l~~~~~l~~lp~~-~~~L~~L~l~~~~~l~~lp~  133 (219)
                      ++|++|++++|.++.. |..+..+   ++|++|++++|. ++.+|.. +++|+.|++++| .++.+|.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~~  289 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAPQ  289 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCch
Confidence            9999999999999865 7777666   699999999965 4578865 479999999996 5666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=1.6e-14  Score=108.64  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=95.9

Q ss_pred             CCccEEEeecCCCcccCcc--ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793            2 ELLQEIDLFLSGIKELPSS--IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~   77 (219)
                      .++++|++++|.++.++..  +..+++|++|++++|.+.+..|..+..+++|++|++++|.+.  .+..+..+++|++|+
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            3789999999999998764  899999999999999888888889999999999999999987  455688999999999


Q ss_pred             ecCCcCCcc-chhhhCCCCCCEEeccCCCCCCc
Q 027793           78 LSGHNFESL-PTGISQLQRLKCLHLINCNMIRS  109 (219)
Q Consensus        78 l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~  109 (219)
                      +++|.++.+ |..+..+++|++|++++|.....
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            999999955 77889999999999999876543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=4.3e-14  Score=106.48  Aligned_cols=103  Identities=21%  Similarity=0.252  Sum_probs=58.4

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~   80 (219)
                      +|++|++++|.++.+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.  .|..+..+++|++|++++
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence            455666666666556555555666666666665554444445555666666666666554  233455556666666666


Q ss_pred             CcCCccch-hhhCCCCCCEEeccCCC
Q 027793           81 HNFESLPT-GISQLQRLKCLHLINCN  105 (219)
Q Consensus        81 n~l~~lp~-~l~~l~~L~~L~l~~~~  105 (219)
                      |.++.+|. .+..+++|+.|++++|.
T Consensus       112 N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          112 NDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCeeChhhhhcCccccEEEeCCCC
Confidence            66655544 34555666666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=9.8e-15  Score=107.28  Aligned_cols=110  Identities=25%  Similarity=0.251  Sum_probs=96.2

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc--ccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL--SGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p--~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.++.+ ..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+. +|  ..+..+++|++|+
T Consensus        48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  126 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD  126 (168)
T ss_dssp             GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred             CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence            36799999999999998 66899999999999999877778877778999999999999887 44  6889999999999


Q ss_pred             ecCCcCCccch----hhhCCCCCCEEeccCCCCCCcCCC
Q 027793           78 LSGHNFESLPT----GISQLQRLKCLHLINCNMIRSLPE  112 (219)
Q Consensus        78 l~~n~l~~lp~----~l~~l~~L~~L~l~~~~~l~~lp~  112 (219)
                      +++|.++.+|.    .+..+++|++|++++|. ...+|.
T Consensus       127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~  164 (168)
T 2ell_A          127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD  164 (168)
T ss_dssp             CCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred             eeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence            99999998876    78899999999999964 455554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.57  E-value=3.3e-14  Score=120.75  Aligned_cols=98  Identities=22%  Similarity=0.284  Sum_probs=44.1

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n   81 (219)
                      ++|++|++++|.++++++ ++.+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.....+..+++|+.|++++|
T Consensus       199 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n  275 (466)
T 1o6v_A          199 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN  275 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             CCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC
Confidence            455555555555555433 4445555555555543322 22 34444455555555544431111344444444444444


Q ss_pred             cCCccchhhhCCCCCCEEeccC
Q 027793           82 NFESLPTGISQLQRLKCLHLIN  103 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~  103 (219)
                      .++.++. +..+++|+.|++++
T Consensus       276 ~l~~~~~-~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          276 QISNISP-LAGLTALTNLELNE  296 (466)
T ss_dssp             CCCCCGG-GTTCTTCSEEECCS
T ss_pred             ccCcccc-ccCCCccCeEEcCC
Confidence            4443332 33444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.56  E-value=5.5e-14  Score=122.09  Aligned_cols=117  Identities=25%  Similarity=0.354  Sum_probs=79.0

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n   81 (219)
                      +++.|++++|+++++|..+.  ++|++|++++|.+. .+|   ..+++|++|++++|.+. +|. +..  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            67778888888777777553  67788888777544 566   34677777777777665 554 443  7777777777


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccCCcCCCcCCc
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~  133 (219)
                      .++.+|.   .+++|+.|++++|. ++.+|..+++|+.|++++| .++.+|.
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N-~L~~lp~  177 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNN-QLTFLPE  177 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSCCCC
T ss_pred             cCCCCCC---cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCC-CCCCcch
Confidence            7777765   56777777777654 4446665567777777764 3555655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.56  E-value=1.1e-14  Score=127.38  Aligned_cols=147  Identities=23%  Similarity=0.234  Sum_probs=117.1

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~   80 (219)
                      |++|+.|++++|.+..+|. +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+..++.+..+++|+.|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence            3678999999999999985 8999999999999996655 443 889999999999999988556899999999999999


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEc
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFV  158 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~  158 (219)
                      |.++.++ .+..+++|+.|++++|. +..++.  .+++|+.|++++| .+..++. +..+           ..++.|+++
T Consensus       119 N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l-----------~~L~~L~Ls  183 (605)
T 1m9s_A          119 NGISDIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDN-QISDIVP-LAGL-----------TKLQNLYLS  183 (605)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSS-CCCCCGG-GTTC-----------TTCCEEECC
T ss_pred             CCCCCCc-cccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCC-cCCCchh-hccC-----------CCCCEEECc
Confidence            9999876 68899999999999975 444543  3579999999997 4555554 3322           145577777


Q ss_pred             CCcccccc
Q 027793          159 NCVKLHKG  166 (219)
Q Consensus       159 ~c~~l~~~  166 (219)
                      +| .+...
T Consensus       184 ~N-~i~~l  190 (605)
T 1m9s_A          184 KN-HISDL  190 (605)
T ss_dssp             SS-CCCBC
T ss_pred             CC-CCCCC
Confidence            76 44443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.56  E-value=2.3e-14  Score=130.03  Aligned_cols=131  Identities=19%  Similarity=0.135  Sum_probs=103.2

Q ss_pred             CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCC-ccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~   77 (219)
                      +++++|++++|.|+.+ |..|..+++|++|++++|...+.+ |..+.++++|++|++++|.+.  .|..+.++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            5789999999999885 556899999999999998666665 677889999999999999876  578888999999999


Q ss_pred             ecCCcCCc-cchh--hhCCCCCCEEeccCCCCCCcCCC----CCCCCCeEeccCCcCCCcCC
Q 027793           78 LSGHNFES-LPTG--ISQLQRLKCLHLINCNMIRSLPE----LPFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        78 l~~n~l~~-lp~~--l~~l~~L~~L~l~~~~~l~~lp~----~~~~L~~L~l~~~~~l~~lp  132 (219)
                      +++|.++. +|..  ++++++|++|++++|...+..+.    .+++|++|++++|..-...+
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence            99998873 5554  78889999999998765543332    24788899988865433333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.56  E-value=2.7e-14  Score=116.49  Aligned_cols=166  Identities=14%  Similarity=0.181  Sum_probs=124.3

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~   79 (219)
                      +++|++|++++|.+++++. +..+++|+++++++|.+.+..+  +..+++|++|++++|.+. ++. +..+++|++|+++
T Consensus       176 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~  251 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIG  251 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             CCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECC
Confidence            4689999999999998877 8889999999999986554433  778999999999999877 443 8889999999999


Q ss_pred             CCcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEE
Q 027793           80 GHNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKF  157 (219)
Q Consensus        80 ~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~  157 (219)
                      +|.++.++ .+..+++|+.|++++|. +..++.  .+++|+.|++++|......|..+..+           ..++.+++
T Consensus       252 ~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-----------~~L~~L~L  318 (347)
T 4fmz_A          252 TNQISDIN-AVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL-----------TNLTTLFL  318 (347)
T ss_dssp             SSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTC-----------TTCSEEEC
T ss_pred             CCccCCCh-hHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhcc-----------ccCCEEEc
Confidence            99998875 68889999999999974 444553  34789999999976444444444433           25568899


Q ss_pred             cCCcccccccccchhHhHHHHHhhhCCCcc
Q 027793          158 VNCVKLHKGTERNFFANFQRRVHNALPGIL  187 (219)
Q Consensus       158 ~~c~~l~~~~~~~~~~~~~~~~~~~lp~~~  187 (219)
                      ++|+ ++..+.   +..+..+...++.++.
T Consensus       319 ~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          319 SQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             CSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             cCCc-cccccC---hhhhhccceeehhhhc
Confidence            8885 555433   4455666555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.56  E-value=1.3e-14  Score=124.63  Aligned_cols=134  Identities=18%  Similarity=0.084  Sum_probs=93.5

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~   79 (219)
                      ++|++|++++|.++++++ .+..+++|++|++++|.+.+..|..++.+++|++|++++|.+. +|..  .+++|++|+++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~   98 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS   98 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence            467788888888877663 5777888888888887666666777778888888888888766 5554  67888888888


Q ss_pred             CCcCCc--cchhhhCCCCCCEEeccCCCCCCcCCCCCCCC--CeEeccCCcC--CCcCCccccC
Q 027793           80 GHNFES--LPTGISQLQRLKCLHLINCNMIRSLPELPFCL--NYLNTSDCKR--LQSLPKISSC  137 (219)
Q Consensus        80 ~n~l~~--lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L--~~L~l~~~~~--l~~lp~~~~~  137 (219)
                      +|.++.  +|..++++++|++|++++|.........+++|  +.|++++|..  ....|..+..
T Consensus        99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~  162 (520)
T 2z7x_B           99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD  162 (520)
T ss_dssp             SSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT
T ss_pred             CCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccc
Confidence            888764  56777888888888888765433222233556  7888877655  3444544444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.56  E-value=1.7e-14  Score=118.13  Aligned_cols=103  Identities=24%  Similarity=0.293  Sum_probs=71.1

Q ss_pred             CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCcc--ccCCCCCCcEEeccccc-cc--ccccCCCCCCCC
Q 027793            1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPE--SLCNLKKLQKLCLSQCR-CL--ILSGLSSLSSLK   74 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~~~-~~--~p~~~~~l~~L~   74 (219)
                      +++|++|++++|.++++|.. ++.+++|++|++++|.+. .+|.  .+..+++|++|++++|. ..  .+..+..+++|+
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~  177 (353)
T 2z80_A           99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE  177 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred             CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence            46788888888888887776 778888888888887554 4444  57778888888888874 32  344566666677


Q ss_pred             EEEecCCcCCcc-chhhhCCCCCCEEeccCC
Q 027793           75 CLELSGHNFESL-PTGISQLQRLKCLHLINC  104 (219)
Q Consensus        75 ~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~  104 (219)
                      +|++++|.++.+ |..+..+++|++|++++|
T Consensus       178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             EEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            777776666633 555566666666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.56  E-value=5.4e-16  Score=126.00  Aligned_cols=127  Identities=25%  Similarity=0.232  Sum_probs=73.4

Q ss_pred             CCccEEEeecCCCcc--cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccc-ccc---ccccCCCCCCCCE
Q 027793            2 ELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQC-RCL---ILSGLSSLSSLKC   75 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~---~p~~~~~l~~L~~   75 (219)
                      ++|++|++++|.++.  ++..+..+++|++|++++|.+.+..+..++.+++|++|++++| .+.   ++..+..+++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            456666666666553  5555666666666666666554455556666666666666666 232   3444555666666


Q ss_pred             EEecCC-cCCc--cchhhhCCC-CCCEEeccCCC-CC--CcCCC---CCCCCCeEeccCCcCC
Q 027793           76 LELSGH-NFES--LPTGISQLQ-RLKCLHLINCN-MI--RSLPE---LPFCLNYLNTSDCKRL  128 (219)
Q Consensus        76 L~l~~n-~l~~--lp~~l~~l~-~L~~L~l~~~~-~l--~~lp~---~~~~L~~L~l~~~~~l  128 (219)
                      |++++| .++.  ++..+..++ +|++|++++|. .+  ..+|.   ..++|++|++++|..+
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l  235 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML  235 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC
Confidence            666666 5652  455566666 66666666653 11  12222   1356666666666533

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=1e-14  Score=120.06  Aligned_cols=126  Identities=19%  Similarity=0.189  Sum_probs=104.5

Q ss_pred             CCCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.|+.++. .|..+++|++|++++|.+....+..+..+++|++|++++|.+.  .|..+..+++|+.|+
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence            4789999999999999875 4899999999999999776666667889999999999999987  467899999999999


Q ss_pred             ecCCcCCccchhh----hCCCCCCEEeccCCCCCCcCCC-C---CCC--CCeEeccCCcC
Q 027793           78 LSGHNFESLPTGI----SQLQRLKCLHLINCNMIRSLPE-L---PFC--LNYLNTSDCKR  127 (219)
Q Consensus        78 l~~n~l~~lp~~l----~~l~~L~~L~l~~~~~l~~lp~-~---~~~--L~~L~l~~~~~  127 (219)
                      +++|.++.+|..+    ..+++|+.|++++| .++.+|. .   ++.  ++.|++++|+.
T Consensus       143 L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          143 LSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCCc
Confidence            9999999998765    57999999999996 4556663 1   233  47889988654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.55  E-value=2.2e-14  Score=115.96  Aligned_cols=164  Identities=16%  Similarity=0.077  Sum_probs=119.6

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccC-CCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGL-SSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~-~~l~~L~~L~l   78 (219)
                      ++|++|++++|.+++++.  ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.  .+..+ ..+++|++|++
T Consensus        99 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A           99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence            456777777777777654  34788999999999877766778888999999999999876  34444 47899999999


Q ss_pred             cCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEE
Q 027793           79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMF  155 (219)
Q Consensus        79 ~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l  155 (219)
                      ++|.++.++. ...+++|++|++++|. ++.+|..   +++|+.|++++| .++.+|..+..+           ..++.+
T Consensus       177 ~~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l-----------~~L~~L  242 (317)
T 3o53_A          177 QYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-----------QNLEHF  242 (317)
T ss_dssp             TTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-----------TTCCEE
T ss_pred             CCCcCccccc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhhHhhcC-----------CCCCEE
Confidence            9999998864 3458999999999965 4556543   478999999996 677888765443           256689


Q ss_pred             EEcCCcccccccccchhHhHHHHHhhh
Q 027793          156 KFVNCVKLHKGTERNFFANFQRRVHNA  182 (219)
Q Consensus       156 ~~~~c~~l~~~~~~~~~~~~~~~~~~~  182 (219)
                      ++++++-... ....++..+..+...+
T Consensus       243 ~l~~N~~~~~-~~~~~~~~~~~L~~l~  268 (317)
T 3o53_A          243 DLRGNGFHCG-TLRDFFSKNQRVQTVA  268 (317)
T ss_dssp             ECTTCCCBHH-HHHHHHHTCHHHHHHH
T ss_pred             EccCCCccCc-CHHHHHhccccceEEE
Confidence            9988754412 2223445555554433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.55  E-value=3e-14  Score=123.40  Aligned_cols=132  Identities=19%  Similarity=0.224  Sum_probs=112.0

Q ss_pred             CCCccEEEeecCCCcccCc--cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc---ccccCCCCCCCCE
Q 027793            1 MELLQEIDLFLSGIKELPS--SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---ILSGLSSLSSLKC   75 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---~p~~~~~l~~L~~   75 (219)
                      +++|++|++++|.+...+.  .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.   +|..+..+++|++
T Consensus       395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  474 (570)
T 2z63_A          395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  474 (570)
T ss_dssp             CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence            4789999999999988543  5889999999999999888888888999999999999999875   7889999999999


Q ss_pred             EEecCCcCCcc-chhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCC
Q 027793           76 LELSGHNFESL-PTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        76 L~l~~n~l~~l-p~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp  132 (219)
                      |++++|.++.+ |..+..+++|++|++++|+.....|..   +++|+.|++++|+.....|
T Consensus       475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            99999999966 778999999999999997654443433   3789999999986554444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.54  E-value=6.2e-14  Score=110.58  Aligned_cols=126  Identities=19%  Similarity=0.218  Sum_probs=104.2

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~   80 (219)
                      +++|++|++++|.+++++. +..+++|++|++++|.+.+ +|.. .. ++|++|++++|.+...+.+..+++|+.|++++
T Consensus        62 l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRN  137 (263)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTT
T ss_pred             CCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCChhhcCcccccEEECCC
Confidence            4789999999999999888 9999999999999996544 5543 33 99999999999987555789999999999999


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCc
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~  133 (219)
                      |.++.++ .+..+++|+.|++++|.. ..++.  .+++|+.|++++|+ +...|.
T Consensus       138 N~i~~~~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~l~~N~-~~~~~~  189 (263)
T 1xeu_A          138 NKLKSIV-MLGFLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQK-CVNEPV  189 (263)
T ss_dssp             SCCCBCG-GGGGCTTCCEEECTTSCC-CBCTTSTTCCCCCEEEEEEEE-EECCCE
T ss_pred             CcCCCCh-HHccCCCCCEEECCCCcC-cchHHhccCCCCCEEeCCCCc-ccCCcc
Confidence            9999887 788999999999999754 44443  24789999999965 444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=1.4e-14  Score=123.93  Aligned_cols=146  Identities=13%  Similarity=0.038  Sum_probs=109.3

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCC-CCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLS-SLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~-~l~~L~~L~l   78 (219)
                      ++|++|++++|.++.++.  ..+++|++|++++|.+.+..|..++.+++|++|++++|.+.  .|..+. .+++|++|++
T Consensus        99 ~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A           99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            467777778887777664  34688999999999877777778888999999999999876  555554 6889999999


Q ss_pred             cCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEE
Q 027793           79 SGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMF  155 (219)
Q Consensus        79 ~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l  155 (219)
                      ++|.++.+|. ...+++|+.|++++|.. ..+|..   +++|+.|++++| .++.+|..+..+           ..+..+
T Consensus       177 s~N~l~~~~~-~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l-----------~~L~~L  242 (487)
T 3oja_A          177 QYNFIYDVKG-QVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFS-----------QNLEHF  242 (487)
T ss_dssp             TTSCCCEEEC-CCCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTS-CCCEECTTCCCC-----------TTCCEE
T ss_pred             CCCccccccc-cccCCCCCEEECCCCCC-CCCCHhHcCCCCccEEEecCC-cCcccchhhccC-----------CCCCEE
Confidence            9999887764 34688999999998654 445543   368999999885 566777765443           145588


Q ss_pred             EEcCCccc
Q 027793          156 KFVNCVKL  163 (219)
Q Consensus       156 ~~~~c~~l  163 (219)
                      ++++++-.
T Consensus       243 ~l~~N~l~  250 (487)
T 3oja_A          243 DLRGNGFH  250 (487)
T ss_dssp             ECTTCCBC
T ss_pred             EcCCCCCc
Confidence            88887544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.54  E-value=3.4e-14  Score=123.31  Aligned_cols=124  Identities=21%  Similarity=0.165  Sum_probs=78.7

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~   79 (219)
                      ++|++|++++|.++++++ .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +|..  .+++|++|+++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence            356777777777777553 4677777777777777655555666677777777777777665 5544  66777777777


Q ss_pred             CCcCCcc--chhhhCCCCCCEEeccCCCCCCcCCCCCCCC--CeEeccCCcC
Q 027793           80 GHNFESL--PTGISQLQRLKCLHLINCNMIRSLPELPFCL--NYLNTSDCKR  127 (219)
Q Consensus        80 ~n~l~~l--p~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L--~~L~l~~~~~  127 (219)
                      +|.++.+  |..++++++|++|++++|.....-...+.+|  ++|++++|..
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred             CCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence            7777654  3567777777777777754332111222344  7777776544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=1.4e-13  Score=101.94  Aligned_cols=122  Identities=25%  Similarity=0.275  Sum_probs=98.6

Q ss_pred             ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEecCC
Q 027793            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLELSGH   81 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~~n   81 (219)
                      .+.+++++++++.+|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            467899999999999654  378999999999776655556789999999999999876 44 44688999999999999


Q ss_pred             cCCccchh-hhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCC
Q 027793           82 NFESLPTG-ISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRL  128 (219)
Q Consensus        82 ~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l  128 (219)
                      .++.+|.. +..+++|++|++++|. ++.+|..    +++|++|++++|+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence            99977764 6889999999999964 4566643    368899999887543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.52  E-value=1.2e-13  Score=117.33  Aligned_cols=126  Identities=20%  Similarity=0.306  Sum_probs=94.1

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~   80 (219)
                      +++|++|++++|.++.++. +..+++|++|++++|.+.+..|  ++.+++|++|++++|.+.....+..+++|+.|++++
T Consensus       176 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  252 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLAN  252 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCS
T ss_pred             CCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCC
Confidence            4678888888888877754 7788888888888886655444  667888888988888876444677888999999999


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCC
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp  132 (219)
                      |.++.++. +..+++|+.|++++|.. ..++.  .+++|+.|++++|. ++.++
T Consensus       253 n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~-l~~~~  303 (466)
T 1o6v_A          253 NQISNLAP-LSGLTKLTELKLGANQI-SNISPLAGLTALTNLELNENQ-LEDIS  303 (466)
T ss_dssp             SCCCCCGG-GTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSC-CSCCG
T ss_pred             Cccccchh-hhcCCCCCEEECCCCcc-CccccccCCCccCeEEcCCCc-ccCch
Confidence            99887765 78889999999998654 33432  24678888887753 44444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=1.8e-14  Score=103.81  Aligned_cols=102  Identities=23%  Similarity=0.237  Sum_probs=90.8

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc--ccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL--SGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p--~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.++++ ..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+. ++  ..+..+++|++|+
T Consensus        41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence            47899999999999998 56899999999999999877778888888999999999999987 33  7889999999999


Q ss_pred             ecCCcCCccch----hhhCCCCCCEEeccC
Q 027793           78 LSGHNFESLPT----GISQLQRLKCLHLIN  103 (219)
Q Consensus        78 l~~n~l~~lp~----~l~~l~~L~~L~l~~  103 (219)
                      +++|.++.+|.    .+..+++|+.|++++
T Consensus       120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999997775    688999999999863

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.52  E-value=9.3e-14  Score=126.05  Aligned_cols=136  Identities=19%  Similarity=0.225  Sum_probs=110.9

Q ss_pred             CCCccEEEeecCC-Cccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--cccc--CCCCCCCC
Q 027793            1 MELLQEIDLFLSG-IKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSG--LSSLSSLK   74 (219)
Q Consensus         1 l~~L~~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~--~~~l~~L~   74 (219)
                      +++|++|++++|. +..+ |..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.  .|..  +..+++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            5789999999984 4456 566999999999999999888788999999999999999999876  4544  88999999


Q ss_pred             EEEecCCcCCcc--chhhhCCCCCCEEeccCCCCCCcCCCCC-----CCCCeEeccCCcCCCcCCcccc
Q 027793           75 CLELSGHNFESL--PTGISQLQRLKCLHLINCNMIRSLPELP-----FCLNYLNTSDCKRLQSLPKISS  136 (219)
Q Consensus        75 ~L~l~~n~l~~l--p~~l~~l~~L~~L~l~~~~~l~~lp~~~-----~~L~~L~l~~~~~l~~lp~~~~  136 (219)
                      +|++++|.++.+  +..++++++|++|++++|......+..+     ++|+.|++++|......|..+.
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~  195 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG  195 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh
Confidence            999999999855  3578999999999999976655555432     6788999988766665554433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.52  E-value=1.1e-13  Score=120.86  Aligned_cols=132  Identities=20%  Similarity=0.173  Sum_probs=104.7

Q ss_pred             CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.|+.+|+. |..+++|++|++++|.+.+..+..|.++++|++|++++|.+. +| ..++.+++|++|+
T Consensus        75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~  154 (635)
T 4g8a_A           75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  154 (635)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence            57899999999999998764 899999999999999765555567899999999999999877 44 4689999999999


Q ss_pred             ecCCcCC--ccchhhhCCCCCCEEeccCCCCCCcCCCCC-------CCCCeEeccCCcCCCcCCc
Q 027793           78 LSGHNFE--SLPTGISQLQRLKCLHLINCNMIRSLPELP-------FCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        78 l~~n~l~--~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~-------~~L~~L~l~~~~~l~~lp~  133 (219)
                      +++|.++  .+|..++.+++|++|++++|...+..+..+       .....++++.+ .++.++.
T Consensus       155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n-~l~~i~~  218 (635)
T 4g8a_A          155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQP  218 (635)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC-CCCEECT
T ss_pred             cccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC-cccccCc
Confidence            9999987  467888999999999999976544333332       23345666663 4554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.52  E-value=1.7e-13  Score=119.07  Aligned_cols=117  Identities=25%  Similarity=0.319  Sum_probs=75.5

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~   80 (219)
                      ++|++|++++|.|+.+|   ..+++|++|++++|.+.+ +|. +..  +|++|++++|.+. +|.   .+++|+.|++++
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~  149 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADN  149 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCC
Confidence            45777888887777777   346777777777775544 665 444  7777777777665 444   456677777777


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccCCcCCCcCCc
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~  133 (219)
                      |.++.+|.   .+++|+.|++++|. ++.+|...++|+.|++++| .++.+|.
T Consensus       150 N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N-~L~~lp~  197 (571)
T 3cvr_A          150 NQLTMLPE---LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTN-LLESLPA  197 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred             CccCcCCC---cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCC-CCCchhh
Confidence            77766664   45667777776653 3445553356666666664 4555555

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=8.8e-14  Score=103.04  Aligned_cols=108  Identities=21%  Similarity=0.273  Sum_probs=92.6

Q ss_pred             CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.++.+|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +| ..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            5799999999999998765 689999999999999776655556789999999999999887 44 45788999999999


Q ss_pred             cCCcCCccchh-hhCCCCCCEEeccCCCCCCc
Q 027793           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRS  109 (219)
Q Consensus        79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~  109 (219)
                      ++|.++.+|.. +..+++|++|++++|+....
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            99999988875 57899999999999865543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.51  E-value=6.4e-15  Score=119.61  Aligned_cols=150  Identities=20%  Similarity=0.248  Sum_probs=115.1

Q ss_pred             CCCccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCC--CCccccCCCCCCcEEecccc-ccc---ccccCCCCC-C
Q 027793            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQC-RCL---ILSGLSSLS-S   72 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~-~~~---~p~~~~~l~-~   72 (219)
                      +++|++|++++|.+++ .+..+..+++|++|++++|...+  .++..+..+++|++|++++| .+.   ++..+..++ +
T Consensus       117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            4789999999999886 67778899999999999994333  36667888999999999999 665   566678889 9


Q ss_pred             CCEEEecCCc--CC--ccchhhhCCCCCCEEeccCCCCCC-cCCC---CCCCCCeEeccCCcCCCcCCccccCCCCCccc
Q 027793           73 LKCLELSGHN--FE--SLPTGISQLQRLKCLHLINCNMIR-SLPE---LPFCLNYLNTSDCKRLQSLPKISSCLETPSNQ  144 (219)
Q Consensus        73 L~~L~l~~n~--l~--~lp~~l~~l~~L~~L~l~~~~~l~-~lp~---~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~  144 (219)
                      |++|++++|.  ++  .+|..+..+++|+.|++++|..++ ..+.   ..++|++|++++|..+..  ..+..+  .   
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l--~---  269 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP--ETLLEL--G---  269 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG--GGGGGG--G---
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH--HHHHHH--h---
Confidence            9999999994  54  678888899999999999987433 3332   247999999999974332  211111  0   


Q ss_pred             cCCCCCCCeEEEEcCC
Q 027793          145 TRGNSYLPVMFKFVNC  160 (219)
Q Consensus       145 ~~~~~~~l~~l~~~~c  160 (219)
                         +...++.+++++|
T Consensus       270 ---~~~~L~~L~l~~~  282 (336)
T 2ast_B          270 ---EIPTLKTLQVFGI  282 (336)
T ss_dssp             ---GCTTCCEEECTTS
T ss_pred             ---cCCCCCEEeccCc
Confidence               1125679999998

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.51  E-value=3.7e-13  Score=114.07  Aligned_cols=101  Identities=23%  Similarity=0.316  Sum_probs=67.6

Q ss_pred             CCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEeccC
Q 027793           25 EGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLIN  103 (219)
Q Consensus        25 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~  103 (219)
                      ++|++|++++|.+.+ +| .++.+++|++|++++|.+. +|..   ..+|++|++++|.++.+| .++++++|+.|++++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN  204 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCC
Confidence            467777777775543 66 4777777777777777655 4432   246777777777777776 577777777777777


Q ss_pred             CCCCCcCCCCCCCCCeEeccCCcCCCcCCc
Q 027793          104 CNMIRSLPELPFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus       104 ~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~  133 (219)
                      |. ++.+|..+++|++|++++| .++.+|.
T Consensus       205 N~-l~~l~~~~~~L~~L~l~~n-~l~~lp~  232 (454)
T 1jl5_A          205 NS-LKKLPDLPLSLESIVAGNN-ILEELPE  232 (454)
T ss_dssp             SC-CSSCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred             Cc-CCcCCCCcCcccEEECcCC-cCCcccc
Confidence            54 4456666667777777775 4556653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=1.3e-13  Score=101.67  Aligned_cols=101  Identities=20%  Similarity=0.278  Sum_probs=86.9

Q ss_pred             ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc-ccCCCCCCCCEEEecCC
Q 027793            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL-SGLSSLSSLKCLELSGH   81 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p-~~~~~l~~L~~L~l~~n   81 (219)
                      .++++++++.++.+|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|.+. +| ..+..+++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            5789999999999998663  88999999999887777888999999999999999877 44 44688999999999999


Q ss_pred             cCCccch-hhhCCCCCCEEeccCCCC
Q 027793           82 NFESLPT-GISQLQRLKCLHLINCNM  106 (219)
Q Consensus        82 ~l~~lp~-~l~~l~~L~~L~l~~~~~  106 (219)
                      .++.+|. .+..+++|+.|++++|..
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            9998876 478899999999999754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=2.7e-14  Score=127.62  Aligned_cols=120  Identities=19%  Similarity=0.230  Sum_probs=95.1

Q ss_pred             CCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCcCCccchhh
Q 027793           12 SGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHNFESLPTGI   90 (219)
Q Consensus        12 ~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~lp~~l   90 (219)
                      |.+...|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. +|..+..+++|++|+|++|.|+.+|..+
T Consensus       211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~  289 (727)
T 4b8c_D          211 NRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL  289 (727)
T ss_dssp             -----------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred             cceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence            333334556888999999999999654 78888889999999999999887 8888999999999999999999999999


Q ss_pred             hCCCCCCEEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCCc
Q 027793           91 SQLQRLKCLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        91 ~~l~~L~~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp~  133 (219)
                      +.+++|++|+|++| .++.+|..+   ++|+.|++++|.....+|.
T Consensus       290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence            99999999999996 457888654   6899999999765544443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.50  E-value=1.8e-13  Score=101.36  Aligned_cols=100  Identities=23%  Similarity=0.345  Sum_probs=82.7

Q ss_pred             cEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cccc-CCCCCCCCEEEecCCc
Q 027793            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSG-LSSLSSLKCLELSGHN   82 (219)
Q Consensus         5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~-~~~l~~L~~L~l~~n~   82 (219)
                      +.+++++++++.+|..+.  ++|++|++++|.+.+..|..+..+++|++|++++|.+. +|.. +..+++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            578888999988988664  78999999999777777778888999999999999876 5543 5788999999999999


Q ss_pred             CCccchh-hhCCCCCCEEeccCCCC
Q 027793           83 FESLPTG-ISQLQRLKCLHLINCNM  106 (219)
Q Consensus        83 l~~lp~~-l~~l~~L~~L~l~~~~~  106 (219)
                      ++.+|.. +..+++|++|++++|..
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCc
Confidence            9888765 78888899999988653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.48  E-value=6.1e-13  Score=116.73  Aligned_cols=30  Identities=23%  Similarity=0.232  Sum_probs=12.5

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSC   35 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~   35 (219)
                      +|++|++++|.++.+|.   .+++|++|++++|
T Consensus        82 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           82 ELRTLEVSGNQLTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             TCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred             CCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence            34444444444444443   2334444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.48  E-value=1.8e-13  Score=112.15  Aligned_cols=153  Identities=20%  Similarity=0.173  Sum_probs=110.0

Q ss_pred             CCCccEEEeecCCCcc-cCcc-ccCCCCCcE-EeccCCCCCCCCccccCCCCCCcEEeccccccc---------------
Q 027793            1 MELLQEIDLFLSGIKE-LPSS-IEHIEGLKC-LRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL---------------   62 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~-lp~~-~~~l~~L~~-L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~---------------   62 (219)
                      |++|++|++++|.+.+ +|.. |..+++++. +.+.+|.+....|..+..+++|++|++++|.+.               
T Consensus        53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~  132 (350)
T 4ay9_X           53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL  132 (350)
T ss_dssp             CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred             CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence            5789999999999865 6654 788888776 445556555555677889999999999998765               


Q ss_pred             -----------cc-ccCCCC-CCCCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCC
Q 027793           63 -----------IL-SGLSSL-SSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDC  125 (219)
Q Consensus        63 -----------~p-~~~~~l-~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~  125 (219)
                                 ++ ..+..+ ..++.|++++|.++.+|.......+|+.+++++++.++.+|..    +++|+.|++++|
T Consensus       133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N  212 (350)
T 4ay9_X          133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  212 (350)
T ss_dssp             EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred             hhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence                       11 123333 3578889999999988877767788999999888888888853    368999999885


Q ss_pred             cCCCcCCccccCCCCCccccCCCCCCCeEEEEcCCccccccc
Q 027793          126 KRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGT  167 (219)
Q Consensus       126 ~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~  167 (219)
                       .++.+|.....             .+..+.+.++..++..+
T Consensus       213 -~l~~lp~~~~~-------------~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          213 -RIHSLPSYGLE-------------NLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             -CCCCCCSSSCT-------------TCCEEECTTCTTCCCCC
T ss_pred             -CcCccChhhhc-------------cchHhhhccCCCcCcCC
Confidence             68888764321             23355555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.48  E-value=7.1e-13  Score=112.34  Aligned_cols=124  Identities=25%  Similarity=0.337  Sum_probs=68.7

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCcc-------------------ccCCCCCCcEEeccccccc
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPE-------------------SLCNLKKLQKLCLSQCRCL   62 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-------------------~~~~l~~L~~L~l~~~~~~   62 (219)
                      ++|++|++++|.++++| .++.+++|++|++++|.+.+ +|.                   .++.+++|++|++++|.+.
T Consensus       131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence            35677777777777776 36677777777777664433 332                   2334444444444444432


Q ss_pred             -ccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccCCcCCCcCCc
Q 027793           63 -ILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        63 -~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~  133 (219)
                       +|..   .++|++|++++|.++.+| .++.+++|++|++++|. +..+|..+++|+.|++++| .++.+|.
T Consensus       209 ~l~~~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~N-~l~~l~~  274 (454)
T 1jl5_A          209 KLPDL---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDN-YLTDLPE  274 (454)
T ss_dssp             SCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCSCCTTCCEEECCSS-CCSCCCC
T ss_pred             cCCCC---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccccccccCEEECCCC-cccccCc
Confidence             2211   134555555555555555 35666677777776643 3445555566666666664 3444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=8.1e-14  Score=103.23  Aligned_cols=104  Identities=19%  Similarity=0.202  Sum_probs=89.9

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc--cCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS--GLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~--~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.++++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +|.  .+..+++|+.|++
T Consensus        42 ~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             TCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence            4899999999999998 55899999999999999665443334488999999999999986 565  7889999999999


Q ss_pred             cCCcCCccchh----hhCCCCCCEEeccCCCC
Q 027793           79 SGHNFESLPTG----ISQLQRLKCLHLINCNM  106 (219)
Q Consensus        79 ~~n~l~~lp~~----l~~l~~L~~L~l~~~~~  106 (219)
                      ++|.++.+|..    +..+++|+.|++++|..
T Consensus       121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             cCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999988875    89999999999998753

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.46  E-value=4.7e-13  Score=117.47  Aligned_cols=118  Identities=25%  Similarity=0.263  Sum_probs=84.8

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n   81 (219)
                      ++++|++++|.++.+|..+.  ++|++|++++|.+ ..+|.   .+++|++|++++|.+. +|.   .+++|++|++++|
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCC-SCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred             CCcEEEecCCCcCccChhhC--CCCcEEEecCCCC-CCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence            46788888888888887654  6888888888754 45554   5678888888888765 554   5677888888888


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEeccCCcCCCcCCcc
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKI  134 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~~  134 (219)
                      .++.+|.   .+++|+.|++++| .+..+|..+++|++|++++| .++.+|..
T Consensus       112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N-~l~~l~~~  159 (622)
T 3g06_A          112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDN-QLASLPAL  159 (622)
T ss_dssp             CCCCCCC---CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCC
T ss_pred             cCCCCCC---CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCC-cCCCcCCc
Confidence            8877775   5567777888775 45567776777777777775 45555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.39  E-value=1.2e-14  Score=120.59  Aligned_cols=126  Identities=17%  Similarity=0.130  Sum_probs=70.3

Q ss_pred             CCCccEEEeecCCCcc----cCccc-------cCCCCCcEEeccCCCCCC----CCccccCCCCCCcEEeccccccc---
Q 027793            1 MELLQEIDLFLSGIKE----LPSSI-------EHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCL---   62 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~----lp~~~-------~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~---   62 (219)
                      +++|++|++++|.+..    +|..+       ..+++|++|++++|.+..    .+|..+..+++|++|++++|.+.   
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~  138 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA  138 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence            3567777777654432    33333       566777777777775554    25556666777777777777654   


Q ss_pred             ---ccccCCCC---------CCCCEEEecCCcCC--ccc---hhhhCCCCCCEEeccCCCCCC-----cCC---CCCCCC
Q 027793           63 ---ILSGLSSL---------SSLKCLELSGHNFE--SLP---TGISQLQRLKCLHLINCNMIR-----SLP---ELPFCL  117 (219)
Q Consensus        63 ---~p~~~~~l---------~~L~~L~l~~n~l~--~lp---~~l~~l~~L~~L~l~~~~~l~-----~lp---~~~~~L  117 (219)
                         ++..+..+         ++|++|++++|.++  .++   ..+..+++|++|++++|....     .+|   ...++|
T Consensus       139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L  218 (386)
T 2ca6_A          139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL  218 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred             HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence               22223233         56666666666664  333   345556666666666654321     111   112456


Q ss_pred             CeEeccCCc
Q 027793          118 NYLNTSDCK  126 (219)
Q Consensus       118 ~~L~l~~~~  126 (219)
                      +.|++++|.
T Consensus       219 ~~L~Ls~n~  227 (386)
T 2ca6_A          219 KVLDLQDNT  227 (386)
T ss_dssp             CEEECCSSC
T ss_pred             cEEECcCCC
Confidence            666666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.35  E-value=1.1e-14  Score=109.92  Aligned_cols=123  Identities=21%  Similarity=0.206  Sum_probs=94.3

Q ss_pred             ccEEEeecC--CCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793            4 LQEIDLFLS--GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         4 L~~L~l~~~--~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~   80 (219)
                      ++...+.+.  .++.+|..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. +|..+..+++|++|++++
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            444555543  555666688899999999999986554 67 7888999999999999876 666666678899999999


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCCC-----CCCCCCeEeccCCcCCCc
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE-----LPFCLNYLNTSDCKRLQS  130 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~-----~~~~L~~L~l~~~~~l~~  130 (219)
                      |.++.+| .+..+++|+.|++++|. +..++.     .+++|++|++++|+....
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            9999887 68888999999999865 444332     357899999998754333

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.34  E-value=1.8e-13  Score=113.46  Aligned_cols=36  Identities=17%  Similarity=0.088  Sum_probs=20.3

Q ss_pred             CCccEEEeecCCCcc-----cCccccCCCCCcEEeccCCCC
Q 027793            2 ELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTK   37 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~   37 (219)
                      ++|++|++++|.+..     +|..+..+++|++|++++|.+
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            456666666665554     444455555566666655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.34  E-value=2.7e-12  Score=111.59  Aligned_cols=99  Identities=21%  Similarity=0.286  Sum_probs=87.7

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c--cccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I--LSGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~--p~~~~~l~~L~~L~   77 (219)
                      |++|++|++++|.++.+|..++.+++|++|++++|.+.+ +| .++.+++|++|++++|.+. +  |..++.+++|+.|+
T Consensus       462 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          462 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             cccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence            468999999999999999999999999999999997665 77 8999999999999999987 4  88999999999999


Q ss_pred             ecCCcCCccchh----hhCCCCCCEEec
Q 027793           78 LSGHNFESLPTG----ISQLQRLKCLHL  101 (219)
Q Consensus        78 l~~n~l~~lp~~----l~~l~~L~~L~l  101 (219)
                      +++|.++.+|..    +..+++|+.|++
T Consensus       540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          540 LQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999877643    345889998864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=8.1e-12  Score=101.92  Aligned_cols=101  Identities=19%  Similarity=0.115  Sum_probs=84.1

Q ss_pred             cEEEeecC-CCcccCccccCCCCCcEEeccC-CCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793            5 QEIDLFLS-GIKELPSSIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         5 ~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~   80 (219)
                      ..++.+++ +++.+|. +..+++|++|++++ |.+.+..+..|..+++|++|++++|.+.  .|..|..+++|++|+|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            35678887 8999999 99999999999996 7666666678999999999999999877  456788999999999999


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCC
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNM  106 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~  106 (219)
                      |.++.+|..+.....|+.|++++|+.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCc
Confidence            99998887654444499999998754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.28  E-value=6e-14  Score=105.89  Aligned_cols=153  Identities=19%  Similarity=0.197  Sum_probs=99.1

Q ss_pred             ccCCCCCcEEeccCCCCCCCCcc------ccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCCcCCccchhhhCC
Q 027793           21 IEHIEGLKCLRLNSCTKLGFLPE------SLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGHNFESLPTGISQL   93 (219)
Q Consensus        21 ~~~l~~L~~L~l~~~~~~~~~p~------~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l   93 (219)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+. +| .+..+++|++|++++|.++.+|..+..+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~   92 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVA   92 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcC
Confidence            33445555555555555444444      7888899999999998876 55 7778889999999999988888877778


Q ss_pred             CCCCEEeccCCCCCCcCCCC--CCCCCeEeccCCcCCCcCCc--cccCCCCCccccCCCCCCCeEEEEcCCccccccccc
Q 027793           94 QRLKCLHLINCNMIRSLPEL--PFCLNYLNTSDCKRLQSLPK--ISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTER  169 (219)
Q Consensus        94 ~~L~~L~l~~~~~l~~lp~~--~~~L~~L~l~~~~~l~~lp~--~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~  169 (219)
                      ++|+.|++++|. ++.+|..  +++|+.|++++| .++.++.  .+..+           ..++.+++++++--...+..
T Consensus        93 ~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l-----------~~L~~L~l~~N~l~~~~~~~  159 (198)
T 1ds9_A           93 DTLEELWISYNQ-IASLSGIEKLVNLRVLYMSNN-KITNWGEIDKLAAL-----------DKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             HHCSEEEEEEEE-CCCHHHHHHHHHSSEEEESEE-ECCCHHHHHHHTTT-----------TTCSEEEECSCHHHHHHHTT
T ss_pred             CcCCEEECcCCc-CCcCCccccCCCCCEEECCCC-cCCchhHHHHHhcC-----------CCCCEEEecCCccccccccc
Confidence            889999999864 4455532  368899999885 4565543  22222           14568888887432222221


Q ss_pred             chhHhHHHHHhhhCCCcc
Q 027793          170 NFFANFQRRVHNALPGIL  187 (219)
Q Consensus       170 ~~~~~~~~~~~~~lp~~~  187 (219)
                      .....+.......+|.+.
T Consensus       160 ~~~~~~~~~~~~~l~~L~  177 (198)
T 1ds9_A          160 NATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCS
T ss_pred             cchHHHHHHHHHhCCCcE
Confidence            222333444444556554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=2.2e-11  Score=90.02  Aligned_cols=87  Identities=22%  Similarity=0.214  Sum_probs=74.3

Q ss_pred             CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc-cCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-GLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.|+.+ |..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +|. .+..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            5789999999999997 456899999999999999766544445689999999999999987 555 4889999999999


Q ss_pred             cCCcCCccch
Q 027793           79 SGHNFESLPT   88 (219)
Q Consensus        79 ~~n~l~~lp~   88 (219)
                      ++|.+...+.
T Consensus       113 ~~N~~~c~~~  122 (174)
T 2r9u_A          113 YNNPWDCECR  122 (174)
T ss_dssp             CSSCBCTTBG
T ss_pred             CCCCcccccc
Confidence            9999886554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.25  E-value=2.3e-12  Score=105.96  Aligned_cols=125  Identities=18%  Similarity=0.203  Sum_probs=78.4

Q ss_pred             CCccEEEeecCCCcccC-----ccccCCC-CCcEEeccCCCCCCCCccccCCC-----CCCcEEeccccccc--ccc---
Q 027793            2 ELLQEIDLFLSGIKELP-----SSIEHIE-GLKCLRLNSCTKLGFLPESLCNL-----KKLQKLCLSQCRCL--ILS---   65 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp-----~~~~~l~-~L~~L~l~~~~~~~~~p~~~~~l-----~~L~~L~l~~~~~~--~p~---   65 (219)
                      ++|++|++++|.+++.+     ..+..++ +|++|++++|.+....+..+..+     ++|++|++++|.+.  .+.   
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            34788888888887766     3466677 78888888886655555555443     78888888888765  111   


Q ss_pred             -cCCCC-CCCCEEEecCCcCCccch-h----hhC-CCCCCEEeccCCCCCC----cCCC----CCCCCCeEeccCCc
Q 027793           66 -GLSSL-SSLKCLELSGHNFESLPT-G----ISQ-LQRLKCLHLINCNMIR----SLPE----LPFCLNYLNTSDCK  126 (219)
Q Consensus        66 -~~~~l-~~L~~L~l~~n~l~~lp~-~----l~~-l~~L~~L~l~~~~~l~----~lp~----~~~~L~~L~l~~~~  126 (219)
                       .+..+ ++|++|++++|.++..+. .    +.. .++|++|++++|....    .++.    ...+|++|++++|.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence             23444 677888888877764432 2    233 2577777777764432    1111    11367777777753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.23  E-value=4.1e-12  Score=104.47  Aligned_cols=60  Identities=12%  Similarity=0.029  Sum_probs=27.5

Q ss_pred             CccEEEeecCCCcccC-ccccCC-----CCCcEEeccCCCCCCCCccc----cCCC-CCCcEEeccccccc
Q 027793            3 LLQEIDLFLSGIKELP-SSIEHI-----EGLKCLRLNSCTKLGFLPES----LCNL-KKLQKLCLSQCRCL   62 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp-~~~~~l-----~~L~~L~l~~~~~~~~~p~~----~~~l-~~L~~L~l~~~~~~   62 (219)
                      +|++|++++|.+++.. ..+..+     ++|++|++++|.+.+..+..    +..+ ++|++|++++|.+.
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  122 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS  122 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence            4555555555555532 223332     55555555555443333322    2222 45555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.23  E-value=5.6e-11  Score=87.45  Aligned_cols=85  Identities=20%  Similarity=0.258  Sum_probs=73.5

Q ss_pred             CCccEEEeecCCCccc-CccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccc-cCCCCCCCCEEEe
Q 027793            2 ELLQEIDLFLSGIKEL-PSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILS-GLSSLSSLKCLEL   78 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~-~~~~l~~L~~L~l   78 (219)
                      ++|++|++++|.|+.+ |..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +|. .+..+++|++|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            5789999999999997 455899999999999999777665656789999999999999987 554 5889999999999


Q ss_pred             cCCcCCcc
Q 027793           79 SGHNFESL   86 (219)
Q Consensus        79 ~~n~l~~l   86 (219)
                      ++|.++..
T Consensus       110 ~~N~~~c~  117 (170)
T 3g39_A          110 LNNPWDCA  117 (170)
T ss_dssp             CSSCBCTT
T ss_pred             CCCCCCCC
Confidence            99998743

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.21  E-value=1.8e-12  Score=109.41  Aligned_cols=102  Identities=23%  Similarity=0.185  Sum_probs=60.4

Q ss_pred             CCCcEEeccCCCCCCC----CccccCCCCCCcEEeccccccc------c-cccCCCCCCCCEEEecCCcCCc-----cch
Q 027793           25 EGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCL------I-LSGLSSLSSLKCLELSGHNFES-----LPT   88 (219)
Q Consensus        25 ~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~------~-p~~~~~l~~L~~L~l~~n~l~~-----lp~   88 (219)
                      ++|++|++++|.+...    ++..+..+++|++|++++|.+.      + +..+..+++|++|++++|.++.     ++.
T Consensus       199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence            3555556555544332    3445556677777777777654      1 2223356777788887777764     566


Q ss_pred             hhhCCCCCCEEeccCCCCCCc----CC----CCCCCCCeEeccCCc
Q 027793           89 GISQLQRLKCLHLINCNMIRS----LP----ELPFCLNYLNTSDCK  126 (219)
Q Consensus        89 ~l~~l~~L~~L~l~~~~~l~~----lp----~~~~~L~~L~l~~~~  126 (219)
                      .+..+++|++|++++|.....    +.    ...++|++|++++|.
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence            677777788888877643211    11    112467777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.12  E-value=3.7e-12  Score=107.51  Aligned_cols=153  Identities=18%  Similarity=0.152  Sum_probs=110.3

Q ss_pred             CCCccEEEeecCCCccc------CccccCCCCCcEEeccCCCCCCC----CccccCCCCCCcEEeccccccc------cc
Q 027793            1 MELLQEIDLFLSGIKEL------PSSIEHIEGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCL------IL   64 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~l------p~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~------~p   64 (219)
                      +++|++|++++|.+.+.      +..+..+++|++|++++|.+...    ++..+..+++|++|++++|.+.      +.
T Consensus       226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~  305 (461)
T 1z7x_W          226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  305 (461)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence            47899999999988763      22234689999999999965443    5777778999999999999875      22


Q ss_pred             ccC-CCCCCCCEEEecCCcCCc-----cchhhhCCCCCCEEeccCCCCCCcCC--------CCCCCCCeEeccCCcCCC-
Q 027793           65 SGL-SSLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCNMIRSLP--------ELPFCLNYLNTSDCKRLQ-  129 (219)
Q Consensus        65 ~~~-~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~~~~l~~lp--------~~~~~L~~L~l~~~~~l~-  129 (219)
                      ..+ ...++|++|++++|.++.     ++..+..+++|++|++++|......+        ...++|++|++++|. ++ 
T Consensus       306 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~  384 (461)
T 1z7x_W          306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSD  384 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCH
T ss_pred             HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CCh
Confidence            222 234689999999999873     56778888999999999975432211        114589999999974 44 


Q ss_pred             ----cCCccccCCCCCccccCCCCCCCeEEEEcCCcccccc
Q 027793          130 ----SLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKG  166 (219)
Q Consensus       130 ----~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~  166 (219)
                          .+|..+...           ..++.++++++ .+...
T Consensus       385 ~~~~~l~~~l~~~-----------~~L~~L~l~~N-~i~~~  413 (461)
T 1z7x_W          385 SSCSSLAATLLAN-----------HSLRELDLSNN-CLGDA  413 (461)
T ss_dssp             HHHHHHHHHHHHC-----------CCCCEEECCSS-SCCHH
T ss_pred             hhHHHHHHHHHhC-----------CCccEEECCCC-CCCHH
Confidence                556554432           15568999887 45543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.02  E-value=1.4e-09  Score=88.14  Aligned_cols=60  Identities=13%  Similarity=0.127  Sum_probs=45.6

Q ss_pred             CCCccEEEeecCCCc--------------------ccCcc-ccC--------CCCCcEEeccCCCCCCCCccccCCCCCC
Q 027793            1 MELLQEIDLFLSGIK--------------------ELPSS-IEH--------IEGLKCLRLNSCTKLGFLPESLCNLKKL   51 (219)
Q Consensus         1 l~~L~~L~l~~~~i~--------------------~lp~~-~~~--------l~~L~~L~l~~~~~~~~~p~~~~~l~~L   51 (219)
                      +++|++||+++|.+.                    .+|.. |..        +++|+.+++.+ .+...-+.+|..+++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            468999999999888                    34443 667        89999999987 4554445578889999


Q ss_pred             cEEecccccc
Q 027793           52 QKLCLSQCRC   61 (219)
Q Consensus        52 ~~L~l~~~~~   61 (219)
                      +.+++++|.+
T Consensus       127 ~~l~l~~n~i  136 (329)
T 3sb4_A          127 KICQIRKKTA  136 (329)
T ss_dssp             CEEEBCCSSC
T ss_pred             ceEEcCCCCc
Confidence            9999988864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.99  E-value=1.2e-09  Score=88.88  Aligned_cols=85  Identities=20%  Similarity=0.141  Sum_probs=72.1

Q ss_pred             CCCccEEEeec-CCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFL-SGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~   77 (219)
                      +++|++|+|++ |.++.+|. .|..+++|++|++++|.+.+..|..|..+++|++|+|++|.+. +|..+.....|+.|+
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~  109 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELV  109 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEE
Confidence            35799999996 99999885 5999999999999999888877888999999999999999987 555443333499999


Q ss_pred             ecCCcCCc
Q 027793           78 LSGHNFES   85 (219)
Q Consensus        78 l~~n~l~~   85 (219)
                      +.+|.+..
T Consensus       110 l~~N~~~c  117 (347)
T 2ifg_A          110 LSGNPLHC  117 (347)
T ss_dssp             CCSSCCCC
T ss_pred             eeCCCccC
Confidence            99999873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.98  E-value=6e-11  Score=98.01  Aligned_cols=56  Identities=20%  Similarity=0.268  Sum_probs=24.7

Q ss_pred             CCCcEEeccccccc------ccccCCCCCCCCEEEecCCcCCc-----cchhhhCCCCCCEEeccCC
Q 027793           49 KKLQKLCLSQCRCL------ILSGLSSLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINC  104 (219)
Q Consensus        49 ~~L~~L~l~~~~~~------~p~~~~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~~  104 (219)
                      ++|++|++++|.+.      ++..+...++|++|++++|.++.     ++..+...++|+.|++++|
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence            44455555554432      22233344445555555554431     2233344444555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.95  E-value=2.1e-11  Score=106.00  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=15.4

Q ss_pred             CCCCcEEeccCCCCCCCCccccC-CCCCCcEEecccc
Q 027793           24 IEGLKCLRLNSCTKLGFLPESLC-NLKKLQKLCLSQC   59 (219)
Q Consensus        24 l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~   59 (219)
                      +++|++|++++|.+....+..+. .+++|++|++++|
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            44455555554433322222222 3444555555444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.92  E-value=2e-10  Score=99.82  Aligned_cols=104  Identities=14%  Similarity=0.191  Sum_probs=52.5

Q ss_pred             CCCccEEEeecCCCcc-cCccccC-CC-CCcEEeccCCCCCC--CCccccCCCCCCcEEeccccccc------ccccCCC
Q 027793            1 MELLQEIDLFLSGIKE-LPSSIEH-IE-GLKCLRLNSCTKLG--FLPESLCNLKKLQKLCLSQCRCL------ILSGLSS   69 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~-lp~~~~~-l~-~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~------~p~~~~~   69 (219)
                      +++|++|+++++.+++ .+..+.. ++ +|++|++++|....  .++.....+++|++|++++|.+.      ++..+..
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  190 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH  190 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence            3567777777776654 2223333 22 36777776664211  11222235666666666666532      1122234


Q ss_pred             CCCCCEEEecCCcCC-----ccchhhhCCCCCCEEeccCC
Q 027793           70 LSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINC  104 (219)
Q Consensus        70 l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~~  104 (219)
                      +++|+.|++++|.++     .++..+.++++|+.|++++|
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence            455556666555553     23333445555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.92  E-value=1.5e-10  Score=100.64  Aligned_cols=105  Identities=16%  Similarity=0.098  Sum_probs=55.6

Q ss_pred             CCCccEEEeecCCCcccC-----ccccCCCCCcEEeccCCCCCC----CCccccCCCCCCcEEeccccccc-ccc-----
Q 027793            1 MELLQEIDLFLSGIKELP-----SSIEHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCL-ILS-----   65 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp-----~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~-~p~-----   65 (219)
                      +++|++|++++|.+++..     .....+++|++|++++|.+.+    .++..+..+++|++|++++|... +|.     
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~  242 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA  242 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence            356777777766554321     123445666666666664431    22333445566666666665432 222     


Q ss_pred             ----------------------cCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEeccCCC
Q 027793           66 ----------------------GLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN  105 (219)
Q Consensus        66 ----------------------~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~~  105 (219)
                                            .+..+++|+.++++++....+|..+..+++|++|++++|.
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence                                  3344445555555554444555555566666666666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.76  E-value=1.2e-09  Score=94.76  Aligned_cols=103  Identities=22%  Similarity=0.248  Sum_probs=55.7

Q ss_pred             CCccEEEeecCCCcc-cCcccc-CCCCCcEEeccCCCCCCC--CccccCCCCCCcEEeccccccc------ccccCCCCC
Q 027793            2 ELLQEIDLFLSGIKE-LPSSIE-HIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQCRCL------ILSGLSSLS   71 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~-lp~~~~-~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~------~p~~~~~l~   71 (219)
                      ++|++|+++++.+++ .+..+. .+++|++|++++|...+.  ++..+..+++|++|++++|.+.      ++.....++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            567777777776655 222232 466777777776633222  3333345667777777766533      222223555


Q ss_pred             CCCEEEecCCc--CC--ccchhhhCCCCCCEEeccCC
Q 027793           72 SLKCLELSGHN--FE--SLPTGISQLQRLKCLHLINC  104 (219)
Q Consensus        72 ~L~~L~l~~n~--l~--~lp~~l~~l~~L~~L~l~~~  104 (219)
                      +|+.|++++|.  ++  .++..+..+++|++|++++|
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            66666666664  22  22222344566666666655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.75  E-value=2.5e-09  Score=88.29  Aligned_cols=105  Identities=17%  Similarity=0.160  Sum_probs=79.2

Q ss_pred             CCccEEEeecCCCcccCc-----cc-cCCCCCcEEeccCCCCCC----CCccccCCCCCCcEEeccccccc------ccc
Q 027793            2 ELLQEIDLFLSGIKELPS-----SI-EHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCL------ILS   65 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-----~~-~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~------~p~   65 (219)
                      ++|++|++++|.+++...     .+ ...++|++|++++|.+..    .++..+..+++|++|++++|.+.      ++.
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            357788888887765221     12 245789999999986533    24445678899999999999976      456


Q ss_pred             cCCCCCCCCEEEecCCcCCc-----cchhhhCCCCCCEEeccCCCC
Q 027793           66 GLSSLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCNM  106 (219)
Q Consensus        66 ~~~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~~~~  106 (219)
                      .+...++|+.|++++|.++.     +...+...++|++|++++|..
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            67778899999999999873     445666789999999999754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.70  E-value=8.4e-09  Score=76.80  Aligned_cols=106  Identities=14%  Similarity=0.088  Sum_probs=70.9

Q ss_pred             ccCCCCCcEEeccCC-CCCC----CCccccCCCCCCcEEeccccccc------ccccCCCCCCCCEEEecCCcCCc----
Q 027793           21 IEHIEGLKCLRLNSC-TKLG----FLPESLCNLKKLQKLCLSQCRCL------ILSGLSSLSSLKCLELSGHNFES----   85 (219)
Q Consensus        21 ~~~l~~L~~L~l~~~-~~~~----~~p~~~~~l~~L~~L~l~~~~~~------~p~~~~~l~~L~~L~l~~n~l~~----   85 (219)
                      +...++|++|++++| .+..    .+...+...++|++|++++|.+.      +...+...++|++|++++|.|+.    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            456778888888887 5432    23445666788888888888765      34445556778888888888772    


Q ss_pred             -cchhhhCCCCCCEEec--cCCCCCCc----CCCC---CCCCCeEeccCCc
Q 027793           86 -LPTGISQLQRLKCLHL--INCNMIRS----LPEL---PFCLNYLNTSDCK  126 (219)
Q Consensus        86 -lp~~l~~l~~L~~L~l--~~~~~l~~----lp~~---~~~L~~L~l~~~~  126 (219)
                       +...+...++|++|++  ++|.....    +...   .++|++|++++|.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence             4556677778888888  66543221    1111   2578888888763

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=4.6e-08  Score=79.12  Aligned_cols=86  Identities=17%  Similarity=0.151  Sum_probs=47.3

Q ss_pred             CCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccc-cccCCCCCCCC-EEEecCCcCCccc-hhhhCCCCCCEEe
Q 027793           24 IEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLK-CLELSGHNFESLP-TGISQLQRLKCLH  100 (219)
Q Consensus        24 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-p~~~~~l~~L~-~L~l~~n~l~~lp-~~l~~l~~L~~L~  100 (219)
                      +++|+.+++++|.+...-+..|..+++|+.+++.+|-..+ +..|.++++|+ .+++.+ .++.++ .+|.++++|+.++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            5566666666654333333345566666666666652222 23456666666 666665 555443 4556666666666


Q ss_pred             ccCCCCCCcCC
Q 027793          101 LINCNMIRSLP  111 (219)
Q Consensus       101 l~~~~~l~~lp  111 (219)
                      ++++ .++.++
T Consensus       304 l~~n-~i~~I~  313 (329)
T 3sb4_A          304 ATGD-KITTLG  313 (329)
T ss_dssp             ECSS-CCCEEC
T ss_pred             eCCC-ccCccc
Confidence            6552 344444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.41  E-value=3.9e-07  Score=74.85  Aligned_cols=150  Identities=13%  Similarity=0.116  Sum_probs=93.3

Q ss_pred             CCCccEEEeecCCCc----------ccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccC-
Q 027793            1 MELLQEIDLFLSGIK----------ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGL-   67 (219)
Q Consensus         1 l~~L~~L~l~~~~i~----------~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~-   67 (219)
                      +++|+.|.+......          ++...+..+++|+.|++++|... .++. + .+++|++|++..|.+.  ....+ 
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            368999998764322          13344567899999999987322 3343 3 3889999999988754  11122 


Q ss_pred             -CCCCCCCEEEecCC--c------CCccchhh--hCCCCCCEEeccCCCCCCcCC------CCCCCCCeEeccCCcCCCc
Q 027793           68 -SSLSSLKCLELSGH--N------FESLPTGI--SQLQRLKCLHLINCNMIRSLP------ELPFCLNYLNTSDCKRLQS  130 (219)
Q Consensus        68 -~~l~~L~~L~l~~n--~------l~~lp~~l--~~l~~L~~L~l~~~~~l~~lp------~~~~~L~~L~l~~~~~l~~  130 (219)
                       ..+++|+.|+|+.+  .      +..+...+  ..+++|+.|++++|......+      ..+++|++|+++.| .++.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d  293 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTD  293 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCCh
Confidence             36899999998632  1      22222223  357899999999876532111      23578999999875 4544


Q ss_pred             -----CCccccCCCCCccccCCCCCCCeEEEEcCCcccccc
Q 027793          131 -----LPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKG  166 (219)
Q Consensus       131 -----lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~  166 (219)
                           ++..+..+           ..++.+++++| .+.+.
T Consensus       294 ~G~~~L~~~L~~l-----------~~L~~L~L~~n-~i~d~  322 (362)
T 2ra8_A          294 EGARLLLDHVDKI-----------KHLKFINMKYN-YLSDE  322 (362)
T ss_dssp             HHHHHHHTTHHHH-----------TTCSEEECCSB-BCCHH
T ss_pred             HHHHHHHhhcccC-----------CcceEEECCCC-cCCHH
Confidence                 22221111           14568999887 45543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.41  E-value=2e-07  Score=68.58  Aligned_cols=80  Identities=20%  Similarity=0.268  Sum_probs=38.3

Q ss_pred             CCcEEeccccccc--ccccCCCCCCCCEEEecCCc-CCc-cchhhhCC----CCCCEEeccCCCCCCc-----CCCCCCC
Q 027793           50 KLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHN-FES-LPTGISQL----QRLKCLHLINCNMIRS-----LPELPFC  116 (219)
Q Consensus        50 ~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~-l~~-lp~~l~~l----~~L~~L~l~~~~~l~~-----lp~~~~~  116 (219)
                      +|+.||+++|.+.  .-..+.++++|+.|++++|. ++. --..+..+    ++|++|++++|..++.     +. .+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cCCC
Confidence            4555555555433  11234455555555555554 441 11123332    3466666666554432     11 1355


Q ss_pred             CCeEeccCCcCCCc
Q 027793          117 LNYLNTSDCKRLQS  130 (219)
Q Consensus       117 L~~L~l~~~~~l~~  130 (219)
                      |++|++++|+.+++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            66666666665554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.40  E-value=9.2e-08  Score=71.12  Aligned_cols=83  Identities=18%  Similarity=0.111  Sum_probs=52.5

Q ss_pred             cccCCCCCCcEEecccc-ccc------ccccCCCCCCCCEEEecCCcCC-----ccchhhhCCCCCCEEeccCCCCCCc-
Q 027793           43 ESLCNLKKLQKLCLSQC-RCL------ILSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIRS-  109 (219)
Q Consensus        43 ~~~~~l~~L~~L~l~~~-~~~------~p~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~l~~-  109 (219)
                      ..+...++|++|++++| .+.      +...+...++|++|++++|.+.     .+...+...++|++|++++|..... 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34556777888888887 554      3445666677888888888775     2344556667788888887643221 


Q ss_pred             ---CCCC---CCCCCeEec--cCC
Q 027793          110 ---LPEL---PFCLNYLNT--SDC  125 (219)
Q Consensus       110 ---lp~~---~~~L~~L~l--~~~  125 (219)
                         +...   ..+|++|++  ++|
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N  133 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQ  133 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSS
T ss_pred             HHHHHHHHHhCCCceEEEecCCCC
Confidence               1111   246888888  554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=6.2e-07  Score=65.91  Aligned_cols=86  Identities=10%  Similarity=0.108  Sum_probs=49.9

Q ss_pred             CCCCEEEecCCcCC-ccchhhhCCCCCCEEeccCCCCCCc-----CCCC---CCCCCeEeccCCcCCCcCCccccCCCCC
Q 027793           71 SSLKCLELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRS-----LPEL---PFCLNYLNTSDCKRLQSLPKISSCLETP  141 (219)
Q Consensus        71 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~-----lp~~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~  141 (219)
                      ..|+.||+++|.++ .--..+..+++|++|++++|..++.     +...   .++|++|++++|..+++-.-..-.. + 
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~-  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-F-  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-C-
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-C-
Confidence            45777777777766 2223456677777777777765542     2221   1357777777777766532111100 1 


Q ss_pred             ccccCCCCCCCeEEEEcCCcccccc
Q 027793          142 SNQTRGNSYLPVMFKFVNCVKLHKG  166 (219)
Q Consensus       142 ~~~~~~~~~~l~~l~~~~c~~l~~~  166 (219)
                              ..++.|++++|+.+++.
T Consensus       139 --------~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          139 --------RNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             --------TTCCEEEEESCTTCCCH
T ss_pred             --------CCCCEEECCCCCCCCch
Confidence                    14557777777777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.28  E-value=6.9e-07  Score=70.19  Aligned_cols=64  Identities=27%  Similarity=0.357  Sum_probs=36.0

Q ss_pred             CCCCCcEEeccccccc----ccccCCCCCCCCEEEecCCcCCccchhhhCCC--CCCEEeccCCCCCCcCC
Q 027793           47 NLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGHNFESLPTGISQLQ--RLKCLHLINCNMIRSLP  111 (219)
Q Consensus        47 ~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~--~L~~L~l~~~~~l~~lp  111 (219)
                      .+++|+.|++++|.+.    +|..+..+++|+.|+|++|.++.+. .+..+.  +|++|++++|.....+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence            4566666666666654    2233345666666666666666542 233333  66666666666554444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.19  E-value=9.2e-06  Score=67.55  Aligned_cols=99  Identities=14%  Similarity=0.154  Sum_probs=44.6

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc-ccCCCCCCCCEEEecC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELSG   80 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p-~~~~~l~~L~~L~l~~   80 (219)
                      ++|+.+++..|+++.++...-...+|+.+.+..+ ....-...|..+++|+.+++..+-..++ ..|.+ .+|+.+.+. 
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp-  256 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLP-  256 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEE-
T ss_pred             ccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeC-
Confidence            3455555555555555443222345555555432 2222233455556666666554322221 22222 344555442 


Q ss_pred             CcCCcc-chhhhCCCCCCEEeccC
Q 027793           81 HNFESL-PTGISQLQRLKCLHLIN  103 (219)
Q Consensus        81 n~l~~l-p~~l~~l~~L~~L~l~~  103 (219)
                      +.++.+ ..+|.++++|+.+++.+
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEES
T ss_pred             CCccEEChhHhhCCCCCCEEEeCC
Confidence            234433 23455556666666554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.14  E-value=2.2e-06  Score=70.40  Aligned_cols=124  Identities=17%  Similarity=0.135  Sum_probs=83.7

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccC--CCCCCcEEecccc--cc-c------ccccC--
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLC--NLKKLQKLCLSQC--RC-L------ILSGL--   67 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~--~l~~L~~L~l~~~--~~-~------~p~~~--   67 (219)
                      +++|+.|+++++.-..++. +. +++|++|++..|.+.......+.  .+++|++|+++.+  .. .      +...+  
T Consensus       171 ~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             CTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            4789999999873224554 43 88999999988765333222333  7899999998642  11 0      11222  


Q ss_pred             CCCCCCCEEEecCCcCC-ccchhhh---CCCCCCEEeccCCCCCC----cCCCC---CCCCCeEeccCCc
Q 027793           68 SSLSSLKCLELSGHNFE-SLPTGIS---QLQRLKCLHLINCNMIR----SLPEL---PFCLNYLNTSDCK  126 (219)
Q Consensus        68 ~~l~~L~~L~l~~n~l~-~lp~~l~---~l~~L~~L~l~~~~~l~----~lp~~---~~~L~~L~l~~~~  126 (219)
                      ..+++|++|++.+|.++ ..+..+.   .+++|++|+++.|....    .++..   +++|+.|++++|.
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            35799999999999987 3333332   57899999999865332    13333   4789999999874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.10  E-value=3.2e-06  Score=66.39  Aligned_cols=64  Identities=20%  Similarity=0.176  Sum_probs=39.3

Q ss_pred             CCCCCCCEEEecCCcCCcc---chhhhCCCCCCEEeccCCCCCCcCCC--CCC--CCCeEeccCCcCCCcCC
Q 027793           68 SSLSSLKCLELSGHNFESL---PTGISQLQRLKCLHLINCNMIRSLPE--LPF--CLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        68 ~~l~~L~~L~l~~n~l~~l---p~~l~~l~~L~~L~l~~~~~l~~lp~--~~~--~L~~L~l~~~~~l~~lp  132 (219)
                      ..+++|+.|++++|.++.+   |..+..+++|+.|+|++|.. ..+..  .+.  +|++|++++|+.-..+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i-~~~~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL-KSERELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC-CSGGGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc-CCchhhhhcccCCcceEEccCCcCccccC
Confidence            3466777778877777644   34556777777888777543 33221  112  67777777766544444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.71  E-value=0.00033  Score=58.16  Aligned_cols=125  Identities=8%  Similarity=0.062  Sum_probs=90.9

Q ss_pred             CCCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-------ccccCCCCCC
Q 027793            1 MELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-------ILSGLSSLSS   72 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-------~p~~~~~l~~   72 (219)
                      +++|+.+++..+ ++.++.. |.. .+|+.+.+..+ ....-+..|..+++|+.+++.++...       .+..|.++++
T Consensus       225 ~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~  301 (401)
T 4fdw_A          225 TSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK  301 (401)
T ss_dssp             CTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred             CCCCCEEecCCC-ccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence            357888888764 6667665 555 78999999653 44444567889999999999887653       3457889999


Q ss_pred             CCEEEecCCcCCccc-hhhhCCCCCCEEeccCCCCCCcCCCC-C--CCCCeEeccCCcCCCcCC
Q 027793           73 LKCLELSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPEL-P--FCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        73 L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~-~--~~L~~L~l~~~~~l~~lp  132 (219)
                      |+.+++.+ .++.++ .+|.++++|+.+.+..+  ++.++.. +  .+|+.+++.++ .+..++
T Consensus       302 L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~~L~~l~l~~n-~~~~l~  361 (401)
T 4fdw_A          302 LARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNTGIKEVKVEGT-TPPQVF  361 (401)
T ss_dssp             CCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSSCCCEEEECCS-SCCBCC
T ss_pred             CCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCCCCCEEEEcCC-CCcccc
Confidence            99999984 577665 46788999999999653  5555532 1  28999999885 344444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.40  E-value=0.00016  Score=53.98  Aligned_cols=104  Identities=18%  Similarity=0.187  Sum_probs=69.0

Q ss_pred             cCCCCCcEEeccCCCCCCC-----CccccCCCCCCcEEeccccccc------ccccCCCCCCCCEEEecCCcCC-----c
Q 027793           22 EHIEGLKCLRLNSCTKLGF-----LPESLCNLKKLQKLCLSQCRCL------ILSGLSSLSSLKCLELSGHNFE-----S   85 (219)
Q Consensus        22 ~~l~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~------~p~~~~~l~~L~~L~l~~n~l~-----~   85 (219)
                      ..-+.|+.|+++++..++.     +.+.+..-+.|+.|++++|.+.      +...+..-+.|++|+|++|.|+     .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            4457789999987523332     3445666788999999999876      4444555678999999999987     3


Q ss_pred             cchhhhCCCCCCEEeccCCCC--CCc-----CCCC---CCCCCeEeccCC
Q 027793           86 LPTGISQLQRLKCLHLINCNM--IRS-----LPEL---PFCLNYLNTSDC  125 (219)
Q Consensus        86 lp~~l~~l~~L~~L~l~~~~~--l~~-----lp~~---~~~L~~L~l~~~  125 (219)
                      +-.++..-+.|+.|++++|..  ++.     +.+.   -+.|+.|+++.+
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            445566667799999986421  221     1111   157888888653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.26  E-value=0.0029  Score=51.62  Aligned_cols=89  Identities=13%  Similarity=0.070  Sum_probs=53.2

Q ss_pred             ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc-ccCCCCCCCCEEEecCCcCCccc-hhhhCCCCCCE
Q 027793           21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKC   98 (219)
Q Consensus        21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~   98 (219)
                      +..+..|+.+.+..+ ....-...+..+.+|+.+.+..+-..++ ..+.++++|+.+.+.++.++.++ .+|.++.+|+.
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~  314 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSS  314 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCE
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhccccccccceeccccccccccccccccccccccceehhhhhcCCCCCCE
Confidence            445566666666543 2222233455666777776655432232 35677788888888777777664 36677788888


Q ss_pred             EeccCCCCCCcCCC
Q 027793           99 LHLINCNMIRSLPE  112 (219)
Q Consensus        99 L~l~~~~~l~~lp~  112 (219)
                      +.+..  .++.++.
T Consensus       315 i~lp~--~l~~I~~  326 (379)
T 4h09_A          315 VTLPT--ALKTIQV  326 (379)
T ss_dssp             EECCT--TCCEECT
T ss_pred             EEcCc--cccEEHH
Confidence            87754  2444443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.13  E-value=0.0021  Score=52.90  Aligned_cols=101  Identities=15%  Similarity=0.195  Sum_probs=61.0

Q ss_pred             ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccccc-ccCCCCCCCCEEEecCCcCCccc-hhhhCCCCCCE
Q 027793           21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLIL-SGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKC   98 (219)
Q Consensus        21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~   98 (219)
                      |..+.+|+.+.+..+ ....-...+.++++|+.+.+...-..++ ..|.++.+|+.+++..+ ++.+. .+|.++.+|+.
T Consensus       261 F~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             eeecccccEEecccc-cceecCcccccccccccccCCCcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            566777777777653 3333334566777777777764332233 45667777777777643 55443 35677777777


Q ss_pred             EeccCCCCCCcCCCC----CCCCCeEeccCC
Q 027793           99 LHLINCNMIRSLPEL----PFCLNYLNTSDC  125 (219)
Q Consensus        99 L~l~~~~~l~~lp~~----~~~L~~L~l~~~  125 (219)
                      +.+..  .++.++..    ..+|+.+++.++
T Consensus       339 i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          339 IAIPS--SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             EEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence            77754  24555532    256777776653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.92  E-value=0.0017  Score=45.00  Aligned_cols=53  Identities=21%  Similarity=0.187  Sum_probs=27.7

Q ss_pred             EEEeecCCCc--ccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccc
Q 027793            6 EIDLFLSGIK--ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR   60 (219)
Q Consensus         6 ~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~   60 (219)
                      .++.++++++  .+|..+.  ++|++|++++|.+...-+..|..+++|+.|++++|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4555566666  5665332  346666666664433333334445555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.81  E-value=0.001  Score=49.52  Aligned_cols=82  Identities=10%  Similarity=0.117  Sum_probs=59.0

Q ss_pred             ccCCCCCCcEEecccc-ccc------ccccCCCCCCCCEEEecCCcCC-----ccchhhhCCCCCCEEeccCCCCCCc--
Q 027793           44 SLCNLKKLQKLCLSQC-RCL------ILSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIRS--  109 (219)
Q Consensus        44 ~~~~l~~L~~L~l~~~-~~~------~p~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~l~~--  109 (219)
                      .+..-+.|+.|+++++ .+.      +.+.+..-+.|+.|+|++|.+.     .+...+..-+.|++|+|++|.....  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3455678999999986 554      4456677789999999999986     4455676778999999998654221  


Q ss_pred             --CCC---CCCCCCeEeccCC
Q 027793          110 --LPE---LPFCLNYLNTSDC  125 (219)
Q Consensus       110 --lp~---~~~~L~~L~l~~~  125 (219)
                        +.+   .-..|++|+++++
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence              111   1257999999864

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.77  E-value=0.0056  Score=49.89  Aligned_cols=98  Identities=12%  Similarity=0.103  Sum_probs=70.0

Q ss_pred             CccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEec
Q 027793            3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~   79 (219)
                      +|+.+.+..+ ++.+... +..+.+|+.+.+..+ ....-...+..+++|+.+.+.++.+.  -...|.++.+|+.+.+.
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            4555555443 4555443 677889999998754 33333446788999999999887654  34678899999999997


Q ss_pred             CCcCCccc-hhhhCCCCCCEEeccC
Q 027793           80 GHNFESLP-TGISQLQRLKCLHLIN  103 (219)
Q Consensus        80 ~n~l~~lp-~~l~~l~~L~~L~l~~  103 (219)
                      .+ ++.+. .+|.++.+|+.+.+..
T Consensus       319 ~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          319 TA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cc-ccEEHHHHhhCCCCCCEEEECC
Confidence            54 77664 4678889998887754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.76  E-value=0.0034  Score=51.61  Aligned_cols=81  Identities=14%  Similarity=0.046  Sum_probs=61.4

Q ss_pred             ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccc-cccCCCCCCCCEEEecCCcCCccc-hhhhCCCCCCE
Q 027793           21 IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLI-LSGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKC   98 (219)
Q Consensus        21 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-p~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~   98 (219)
                      +..+.+|+.+.+..+ ....-..+|..+++|+.+++..+-..+ ...|.++++|+.+.+..+ ++.+. .+|.++.+|+.
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~  370 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKK  370 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCE
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCE
Confidence            677889999998764 433334568889999999997653223 467889999999999766 77664 47888999999


Q ss_pred             EeccC
Q 027793           99 LHLIN  103 (219)
Q Consensus        99 L~l~~  103 (219)
                      +++..
T Consensus       371 i~lp~  375 (394)
T 4fs7_A          371 VELPK  375 (394)
T ss_dssp             EEEEG
T ss_pred             EEECC
Confidence            99875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.59  E-value=0.005  Score=50.63  Aligned_cols=101  Identities=9%  Similarity=0.153  Sum_probs=72.7

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEec
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELS   79 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~   79 (219)
                      .+|+.+.+..+ +..+.. .|..+.+|+.+.+... ....-...|.++.+|+.+++..+-.. ....|.++++|+.+.+.
T Consensus       265 ~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          265 AYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             SSCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEC
T ss_pred             ccccEEecccc-cceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEEC
Confidence            45666666543 234444 3778899999999743 33333446888999999999875333 34578899999999996


Q ss_pred             CCcCCccc-hhhhCCCCCCEEeccCCC
Q 027793           80 GHNFESLP-TGISQLQRLKCLHLINCN  105 (219)
Q Consensus        80 ~n~l~~lp-~~l~~l~~L~~L~l~~~~  105 (219)
                      .+ ++.+. .+|.++.+|+.+++.++.
T Consensus       343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          343 SS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             cc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            54 77664 478999999999998753

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.49  E-value=0.0095  Score=48.91  Aligned_cols=99  Identities=16%  Similarity=0.125  Sum_probs=52.9

Q ss_pred             CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccc------------c------
Q 027793            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRC------------L------   62 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~------------~------   62 (219)
                      .+|+.+.+.. .++.++.. |..+++|+.+++..+ ....-...+..+++|+.+.+..+-.            .      
T Consensus        71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~  148 (394)
T 4fs7_A           71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPE  148 (394)
T ss_dssp             TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCT
T ss_pred             CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCc
Confidence            4566666653 35666553 667777777777643 2222223444555555544432210            0      


Q ss_pred             -----ccccCCCCCCCCEEEecCCcCCccc-hhhhCCCCCCEEeccC
Q 027793           63 -----ILSGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKCLHLIN  103 (219)
Q Consensus        63 -----~p~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~  103 (219)
                           ....|.++++|+.+.+.++- +.++ .+|.++.+|+.+++..
T Consensus       149 ~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          149 GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCT
T ss_pred             cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCC
Confidence                 12346667777777776443 3332 3456666677666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.93  E-value=0.0067  Score=41.94  Aligned_cols=36  Identities=17%  Similarity=0.221  Sum_probs=32.3

Q ss_pred             CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCC
Q 027793            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTK   37 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~   37 (219)
                      ++|++|+|++|.|+.+|.. |..+++|++|++.+|.+
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            3799999999999999886 78899999999999965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 70  LSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQ 129
             SL+ L +S +    LP    +L+RL      + N +  +PELP  L  L+      L+
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERLI----ASFNHLAEVPELPQNLKQLHVEYNP-LR 337

Query: 130 SLPKISSCLE 139
             P I   +E
Sbjct: 338 EFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 46  CNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN 105
                L++L +S  +  ++   +    L+ L  S ++   +P     L++L     +  N
Sbjct: 281 DLPPSLEELNVSNNK--LIELPALPPRLERLIASFNHLAEVPELPQNLKQLH----VEYN 334

Query: 106 MIRSLPELPFCLNYLN 121
            +R  P++P  +  L 
Sbjct: 335 PLREFPDIPESVEDLR 350

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 4e-05
 Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 23  HIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHN 82
           +++ L  L L         P  + +L KLQ+L  +  +   +S L++L+++  L    + 
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQ 362

Query: 83  FESLPTGISQLQRLKCLHL 101
              L   ++ L R+  L L
Sbjct: 363 ISDLT-PLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 46  CNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCN 105
            NLK L  L L       +S +SSL+ L+ L  + +    + + ++ L  +  L     N
Sbjct: 304 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSA-GHN 361

Query: 106 MIRSLPELPFC--LNYLNTSD 124
            I  L  L     +  L  +D
Sbjct: 362 QISDLTPLANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 1   MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR 60
           ++ L  + L+ + I ++   +  +  L+ L   +         SL NL  +  L     +
Sbjct: 306 LKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 61  CLILSGLSSLSSLKCLELSG 80
              L+ L++L+ +  L L+ 
Sbjct: 363 ISDLTPLANLTRITQLGLND 382

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 58  QCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINCNMIRSLPEL 113
               L        S    L++S     SLP+    L+ LK L   +   ++ LP L
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLPTL 241

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.64
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.62
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.6
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.58
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.53
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.51
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.49
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.49
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.45
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.37
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.33
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.32
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.06
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.72
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.12
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.68

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.6e-16  Score=122.53  Aligned_cols=150  Identities=20%  Similarity=0.109  Sum_probs=76.5

Q ss_pred             CccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793            3 LLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~   80 (219)
                      ++++|++++|.|+.+|. .|..+++|++|++++|.+ +.+| .++.+++|++|++++|.+. .+..+..+++|+.|++++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQ-VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEE-CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccc-cccc-cccccccccccccccccccccccccccccccccccccc
Confidence            45556666666555543 255555666666655533 2333 2345555666666655544 444455555666666665


Q ss_pred             CcCCccc-hhhhCCCCCCEEeccCCCCCCcCCCC----CCCCCeEeccCCcCCCcCCcc-ccCCCCCccccCCCCCCCeE
Q 027793           81 HNFESLP-TGISQLQRLKCLHLINCNMIRSLPEL----PFCLNYLNTSDCKRLQSLPKI-SSCLETPSNQTRGNSYLPVM  154 (219)
Q Consensus        81 n~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~----~~~L~~L~l~~~~~l~~lp~~-~~~~~~~~~~~~~~~~~l~~  154 (219)
                      |.+..++ ..+..+.+++.|++++| .+..+|..    .+.++.+++++| .++.++.. +..+           ..++.
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l-----------~~L~~  176 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGL-----------ENLDT  176 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTC-----------TTCCE
T ss_pred             cccceeecccccccccccccccccc-ccceeccccccccccchhcccccc-cccccCccccccc-----------cccce
Confidence            5555433 23345555666666553 23333321    245666666664 34444432 2222           14456


Q ss_pred             EEEcCCcccccccc
Q 027793          155 FKFVNCVKLHKGTE  168 (219)
Q Consensus       155 l~~~~c~~l~~~~~  168 (219)
                      ++++++ .++.++.
T Consensus       177 L~Ls~N-~L~~lp~  189 (266)
T d1p9ag_         177 LLLQEN-SLYTIPK  189 (266)
T ss_dssp             EECCSS-CCCCCCT
T ss_pred             eecccC-CCcccCh
Confidence            777665 4555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.5e-15  Score=104.72  Aligned_cols=100  Identities=21%  Similarity=0.235  Sum_probs=88.1

Q ss_pred             cEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCcCC
Q 027793            5 QEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFE   84 (219)
Q Consensus         5 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~l~   84 (219)
                      |+|++++|+++.++. ++.+++|++|++++|.+ ..+|+.++.+++|++|++++|.+.-.+.+..+++|+++++++|+++
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCcc-CcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccC
Confidence            689999999999986 89999999999999955 5688889999999999999999884446899999999999999999


Q ss_pred             ccc--hhhhCCCCCCEEeccCCCC
Q 027793           85 SLP--TGISQLQRLKCLHLINCNM  106 (219)
Q Consensus        85 ~lp--~~l~~l~~L~~L~l~~~~~  106 (219)
                      .++  ..+..+++|+.+++++|+.
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcC
Confidence            776  3678899999999999654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.4e-15  Score=114.46  Aligned_cols=145  Identities=26%  Similarity=0.231  Sum_probs=117.6

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEe
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLEL   78 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l   78 (219)
                      +++|++|++++|+|+.+|. ++.+++|++|++++|.+ ...+..+..+++|++|++++|...  .+..+..+.++++|++
T Consensus        54 l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l  131 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (266)
T ss_dssp             CTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             ccccccccccccccccccc-ccccccccccccccccc-cccccccccccccccccccccccceeeccccccccccccccc
Confidence            5789999999999999876 67899999999999965 455678889999999999999876  4456778899999999


Q ss_pred             cCCcCCccchh-hhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCe
Q 027793           79 SGHNFESLPTG-ISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPV  153 (219)
Q Consensus        79 ~~n~l~~lp~~-l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~  153 (219)
                      ++|.++.+|.. +..+++++.+++++|+. +.++. .   +++|++|++++| .++.+|..+...           ..++
T Consensus       132 ~~n~l~~l~~~~~~~l~~l~~l~l~~N~l-~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~-----------~~L~  198 (266)
T d1p9ag_         132 KGNELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGS-----------HLLP  198 (266)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCC-SCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-----------CCCS
T ss_pred             cccccceeccccccccccchhcccccccc-cccCccccccccccceeecccC-CCcccChhHCCC-----------CCCC
Confidence            99999988754 57789999999999754 45543 2   478999999996 588999876544           1445


Q ss_pred             EEEEcCC
Q 027793          154 MFKFVNC  160 (219)
Q Consensus       154 ~l~~~~c  160 (219)
                      .+++++-
T Consensus       199 ~L~L~~N  205 (266)
T d1p9ag_         199 FAFLHGN  205 (266)
T ss_dssp             EEECCSC
T ss_pred             EEEecCC
Confidence            7777764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.60  E-value=5.4e-16  Score=123.21  Aligned_cols=133  Identities=20%  Similarity=0.306  Sum_probs=109.0

Q ss_pred             CccEEEeecCCCcc---cCccccCCCCCcEEeccC-CCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEE
Q 027793            3 LLQEIDLFLSGIKE---LPSSIEHIEGLKCLRLNS-CTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCL   76 (219)
Q Consensus         3 ~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L   76 (219)
                      +++.|+++++.+..   +|+.++++++|++|++++ |.+.+.+|+.++++++|++|++++|.+.  .+..+..+..|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            58899999998874   889999999999999987 6778899999999999999999999876  55667888999999


Q ss_pred             EecCCcCC-ccchhhhCCCCCCEEeccCCCCCCcCCCCC----CCCCeEeccCCcCCCcCCccc
Q 027793           77 ELSGHNFE-SLPTGISQLQRLKCLHLINCNMIRSLPELP----FCLNYLNTSDCKRLQSLPKIS  135 (219)
Q Consensus        77 ~l~~n~l~-~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~----~~L~~L~l~~~~~l~~lp~~~  135 (219)
                      ++++|.+. .+|..+.+++.++.+++++|...+.+|..+    ..++.+++++|......|..+
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~  194 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            99999865 788899999999999999987777777643    234677777765444444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.6e-14  Score=108.33  Aligned_cols=147  Identities=22%  Similarity=0.230  Sum_probs=106.0

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n   81 (219)
                      .+|++|+++++.++.++. +..+++|++|++++|.+.+ ++ .++.+++|++|++++|.+.....+..+++|+.|++++|
T Consensus        46 ~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS
T ss_pred             cCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccC-cc-ccccCccccccccccccccccccccccccccccccccc
Confidence            467889999998888765 7888999999999885544 44 36788899999999988763336788889999999988


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcC
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVN  159 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~  159 (219)
                      .+..++ .+..++.++.+++++|.. ...+.  .+++|+.+++++| .++.++. +..+           ..++.+++++
T Consensus       123 ~~~~~~-~l~~l~~l~~l~~~~n~l-~~~~~~~~l~~L~~l~l~~n-~l~~i~~-l~~l-----------~~L~~L~Ls~  187 (210)
T d1h6ta2         123 GISDIN-GLVHLPQLESLYLGNNKI-TDITVLSRLTKLDTLSLEDN-QISDIVP-LAGL-----------TKLQNLYLSK  187 (210)
T ss_dssp             CCCCCG-GGGGCTTCCEEECCSSCC-CCCGGGGGCTTCSEEECCSS-CCCCCGG-GTTC-----------TTCCEEECCS
T ss_pred             cccccc-cccccccccccccccccc-cccccccccccccccccccc-ccccccc-ccCC-----------CCCCEEECCC
Confidence            887766 577788888888887643 33332  3468888888886 4566553 2222           1455777777


Q ss_pred             Cccccccc
Q 027793          160 CVKLHKGT  167 (219)
Q Consensus       160 c~~l~~~~  167 (219)
                      + .+++.+
T Consensus       188 N-~i~~l~  194 (210)
T d1h6ta2         188 N-HISDLR  194 (210)
T ss_dssp             S-CCCBCG
T ss_pred             C-CCCCCh
Confidence            6 565543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.8e-14  Score=107.23  Aligned_cols=147  Identities=18%  Similarity=0.222  Sum_probs=115.0

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n   81 (219)
                      +++++|+++++++++++. +..+++|++|++++|.+.+ ++ .++.+++|++|++++|.......+..++.|+.+++++|
T Consensus        40 ~~l~~L~l~~~~i~~l~~-l~~l~nL~~L~Ls~N~l~~-~~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCccc-cccCCCcCcCccccccccC-cc-cccCCccccccccccccccccccccccccccccccccc
Confidence            578999999999998865 8889999999999996544 44 38899999999999998774446889999999999999


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcC
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVN  159 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~  159 (219)
                      .+..++ .+..+++|+.|++++|. +..++.  ..++|+.|++.+| .++.++. +..+           ..++.+++++
T Consensus       117 ~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n-~l~~l~~-l~~l-----------~~L~~L~ls~  181 (199)
T d2omxa2         117 QITDID-PLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLNFSSN-QVTDLKP-LANL-----------TTLERLDISS  181 (199)
T ss_dssp             CCCCCG-GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSS-CCCCCGG-GTTC-----------TTCCEEECCS
T ss_pred             cccccc-ccchhhhhHHhhhhhhh-hcccccccccccccccccccc-cccCCcc-ccCC-----------CCCCEEECCC
Confidence            887665 57789999999999864 455553  3478999999886 5666653 2222           1566899988


Q ss_pred             Cccccccc
Q 027793          160 CVKLHKGT  167 (219)
Q Consensus       160 c~~l~~~~  167 (219)
                      + ++++.+
T Consensus       182 N-~i~~i~  188 (199)
T d2omxa2         182 N-KVSDIS  188 (199)
T ss_dssp             S-CCCCCG
T ss_pred             C-CCCCCc
Confidence            8 576653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=2.9e-14  Score=106.06  Aligned_cols=127  Identities=20%  Similarity=0.289  Sum_probs=107.7

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~   80 (219)
                      +++|++|++++|+++++++ ++.+++|++|++++|.. ..++ .+..+++|+.|++++|.......+..+++|+.+++++
T Consensus        61 l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~  137 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS  137 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             CCCcCcCccccccccCccc-ccCCccccccccccccc-cccc-ccccccccccccccccccccccccchhhhhHHhhhhh
Confidence            5789999999999999876 89999999999999854 4454 4889999999999999877556688999999999999


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCCc
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp~  133 (219)
                      |.+..++ .+..+++|+.|++++|+ ++.++.  .+++|++|++++| .+++++.
T Consensus       138 n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~~l~~l~~L~~L~ls~N-~i~~i~~  189 (199)
T d2omxa2         138 NTISDIS-ALSGLTSLQQLNFSSNQ-VTDLKPLANLTTLERLDISSN-KVSDISV  189 (199)
T ss_dssp             SCCCCCG-GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCCCGG
T ss_pred             hhhcccc-ccccccccccccccccc-ccCCccccCCCCCCEEECCCC-CCCCCcc
Confidence            9998876 58889999999999964 555653  3589999999997 5777763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.56  E-value=1.1e-14  Score=115.09  Aligned_cols=61  Identities=23%  Similarity=0.253  Sum_probs=54.3

Q ss_pred             CCccEEEeecCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc
Q 027793            2 ELLQEIDLFLSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL   62 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~   62 (219)
                      +++++|++++|+|+.+|+ .|..+++|++|++++|.+....|..+..+++|++|++++|++.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~   92 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK   92 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC
Confidence            578999999999999987 5899999999999999887777888999999999999998754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.4e-15  Score=105.90  Aligned_cols=100  Identities=19%  Similarity=0.209  Sum_probs=52.6

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cccc-CCCCCCCCEEEecC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSG-LSSLSSLKCLELSG   80 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~-~~~l~~L~~L~l~~   80 (219)
                      ++++|++++|+|+.++..+..+++|++|++++|.+. .++ .+..+++|++|++++|.+. ++.. +..+++|+.|++++
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            455566666666555544445555666666655332 232 3555555666666665544 3322 23455555666665


Q ss_pred             CcCCccch--hhhCCCCCCEEeccCC
Q 027793           81 HNFESLPT--GISQLQRLKCLHLINC  104 (219)
Q Consensus        81 n~l~~lp~--~l~~l~~L~~L~l~~~  104 (219)
                      |.++.++.  .+..+++|++|++++|
T Consensus        97 N~i~~~~~l~~l~~l~~L~~L~l~~N  122 (162)
T d1a9na_          97 NSLVELGDLDPLASLKSLTYLCILRN  122 (162)
T ss_dssp             CCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccchhhcCCC
Confidence            55554442  3455555555555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.55  E-value=4.8e-15  Score=117.59  Aligned_cols=172  Identities=19%  Similarity=0.203  Sum_probs=113.4

Q ss_pred             CCCccEEEeec-CCCc-ccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEE
Q 027793            1 MELLQEIDLFL-SGIK-ELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCL   76 (219)
Q Consensus         1 l~~L~~L~l~~-~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L   76 (219)
                      |++|++|++++ |.+. .+|..++++++|++|++++|.+.+..+..+..+++|+++++++|...  +|..+..++.++.+
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            57888999986 7777 48888888999999998888776665655666666666666666543  44444444444444


Q ss_pred             EecCCcCC-ccc------------------------------------------------hhhhCCCCCCEEeccCCCCC
Q 027793           77 ELSGHNFE-SLP------------------------------------------------TGISQLQRLKCLHLINCNMI  107 (219)
Q Consensus        77 ~l~~n~l~-~lp------------------------------------------------~~l~~l~~L~~L~l~~~~~l  107 (219)
                      ++++|.++ .+|                                                ..+..+++++.+++++|...
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44444332 222                                                23345667888888887766


Q ss_pred             CcCCCC--CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcCCcccc-cccccchhHhHHHHHhhhCC
Q 027793          108 RSLPEL--PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLH-KGTERNFFANFQRRVHNALP  184 (219)
Q Consensus       108 ~~lp~~--~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~-~~~~~~~~~~~~~~~~~~lp  184 (219)
                      ..+|..  .++|+.|++++|.....+|..+..+           ..++.++++++ +++ .+|.   +..++.+...++.
T Consensus       235 ~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L-----------~~L~~L~Ls~N-~l~g~iP~---~~~L~~L~~l~l~  299 (313)
T d1ogqa_         235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-----------KFLHSLNVSFN-NLCGEIPQ---GGNLQRFDVSAYA  299 (313)
T ss_dssp             CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC-----------TTCCEEECCSS-EEEEECCC---STTGGGSCGGGTC
T ss_pred             ccccccccccccccccCccCeecccCChHHhCC-----------CCCCEEECcCC-cccccCCC---cccCCCCCHHHhC
Confidence            555543  4789999999976666899888765           14568888886 455 3443   2345556565666


Q ss_pred             Ccc
Q 027793          185 GIL  187 (219)
Q Consensus       185 ~~~  187 (219)
                      ++.
T Consensus       300 ~N~  302 (313)
T d1ogqa_         300 NNK  302 (313)
T ss_dssp             SSS
T ss_pred             CCc
Confidence            554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=2.1e-14  Score=106.23  Aligned_cols=121  Identities=21%  Similarity=0.175  Sum_probs=97.2

Q ss_pred             ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCC-ccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecC
Q 027793            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~   80 (219)
                      .++++.++++++.+|..+.  +++++|++++|.+...+ +..|..+++|+.|++++|.+.  .+..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4678888899999998764  68999999999776544 456788999999999999876  556788899999999999


Q ss_pred             CcCCccch-hhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcC
Q 027793           81 HNFESLPT-GISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKR  127 (219)
Q Consensus        81 n~l~~lp~-~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~  127 (219)
                      |+++.+|. +|.++++|++|++++|. ++.+|. .   +++|++|++++|+.
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCccccccccccccc
Confidence            99997765 57889999999999864 555654 2   36889999988654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=2.7e-14  Score=105.60  Aligned_cols=106  Identities=19%  Similarity=0.184  Sum_probs=93.1

Q ss_pred             CCccEEEeecCCCcc-cCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEE
Q 027793            2 ELLQEIDLFLSGIKE-LPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLE   77 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~-lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~   77 (219)
                      +++++|++++|.|+. ++. .|..+++|++|++++|.+....+..+..+++|++|++++|.+. + +..|.++++|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            478999999999986 444 4789999999999999888888888999999999999999987 4 56789999999999


Q ss_pred             ecCCcCCccch-hhhCCCCCCEEeccCCCCC
Q 027793           78 LSGHNFESLPT-GISQLQRLKCLHLINCNMI  107 (219)
Q Consensus        78 l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~l  107 (219)
                      +++|.|+.+|. +|..+++|+++++++|...
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccccccCHHHhcCCcccccccccccccc
Confidence            99999998865 5789999999999997643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=1.8e-13  Score=103.55  Aligned_cols=148  Identities=19%  Similarity=0.265  Sum_probs=97.5

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n   81 (219)
                      .+|+.|++.+|+|++++ .+..+++|++|++++|.+.+..  .+..+++++++++++|...-...+..+++|+.++++++
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS
T ss_pred             CCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc--cccccccccccccccccccccccccccccccccccccc
Confidence            46788888888888875 4788888888888887654432  26777888888888776653334556666666666655


Q ss_pred             cCCccc---------------------hhhhCCCCCCEEeccCCCCCCcCC--CCCCCCCeEeccCCcCCCcCCccccCC
Q 027793           82 NFESLP---------------------TGISQLQRLKCLHLINCNMIRSLP--ELPFCLNYLNTSDCKRLQSLPKISSCL  138 (219)
Q Consensus        82 ~l~~lp---------------------~~l~~l~~L~~L~l~~~~~l~~lp--~~~~~L~~L~l~~~~~l~~lp~~~~~~  138 (219)
                      ....++                     ..+..+++|+.|++++|... ..+  ..+++|+.|++++| .+++++. +..+
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l  194 (227)
T d1h6ua2         118 QITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDN-KISDISP-LASL  194 (227)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS-CCCCCGG-GGGC
T ss_pred             cccccchhccccchhhhhchhhhhchhhhhccccccccccccccccc-cchhhcccccceecccCCC-ccCCChh-hcCC
Confidence            433111                     23566778888888886543 333  23578899999886 5777664 2222


Q ss_pred             CCCccccCCCCCCCeEEEEcCCccccccc
Q 027793          139 ETPSNQTRGNSYLPVMFKFVNCVKLHKGT  167 (219)
Q Consensus       139 ~~~~~~~~~~~~~l~~l~~~~c~~l~~~~  167 (219)
                                 ..++.+++++| +++..+
T Consensus       195 -----------~~L~~L~Ls~N-~lt~i~  211 (227)
T d1h6ua2         195 -----------PNLIEVHLKNN-QISDVS  211 (227)
T ss_dssp             -----------TTCCEEECTTS-CCCBCG
T ss_pred             -----------CCCCEEECcCC-cCCCCc
Confidence                       15568888887 576654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=2.5e-13  Score=101.69  Aligned_cols=126  Identities=23%  Similarity=0.268  Sum_probs=81.9

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecC
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~   80 (219)
                      +++|++|++++|.++++++ ++.+++|++|++++|.+ ..+| .+..+++|+.|++++|.......+..+++++.+++++
T Consensus        67 l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~  143 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGN  143 (210)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCCCEEeCCCccccCccc-cccCccccccccccccc-cccc-ccccccccccccccccccccccccccccccccccccc
Confidence            4567777777777777664 56677777777777643 3344 4666777777777777655444566667777777777


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCCC--CCCCCCeEeccCCcCCCcCC
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLPE--LPFCLNYLNTSDCKRLQSLP  132 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~--~~~~L~~L~l~~~~~l~~lp  132 (219)
                      |.++..+ .+..+++|+.+++++|. +..++.  .+++|++|++++| .++++|
T Consensus       144 n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~~l~~l~~L~~L~Ls~N-~i~~l~  194 (210)
T d1h6ta2         144 NKITDIT-VLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKN-HISDLR  194 (210)
T ss_dssp             SCCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSS-CCCBCG
T ss_pred             ccccccc-ccccccccccccccccc-ccccccccCCCCCCEEECCCC-CCCCCh
Confidence            7776544 45567777777777754 344442  2467777777765 456655

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=3.7e-13  Score=101.84  Aligned_cols=56  Identities=16%  Similarity=0.274  Sum_probs=25.7

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccc
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR   60 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~   60 (219)
                      ++|++|++++|.++++++ +..+++++++++++|.. +.++ .+..+++|+.++++++.
T Consensus        63 ~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~-~~i~-~l~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             TTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCEEECTTSC
T ss_pred             CCCcEeecCCceeecccc-ccccccccccccccccc-cccc-ccccccccccccccccc
Confidence            445555555555544433 44455555555554422 2222 34444555555554443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.46  E-value=3.5e-13  Score=106.18  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=56.9

Q ss_pred             cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc--ccccCCCCCCCCEEEecCCcCCcc-chhhhCCCCC
Q 027793           20 SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL--ILSGLSSLSSLKCLELSGHNFESL-PTGISQLQRL   96 (219)
Q Consensus        20 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~--~p~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L   96 (219)
                      .+..+++|+++++++|.+ ..+|..  .+++|+.|++++|...  .+..+..++.++.|++++|.++.+ +..+..+++|
T Consensus       145 ~~~~l~~L~~l~l~~n~l-~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L  221 (305)
T d1xkua_         145 AFQGMKKLSYIRIADTNI-TTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  221 (305)
T ss_dssp             GGGGCTTCCEEECCSSCC-CSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             ccccccccCccccccCCc-cccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccc
Confidence            345555666666655532 223322  2455666666655543  344555556666666666665544 3344555666


Q ss_pred             CEEeccCCCCCCcCCCC---CCCCCeEeccCCcCCCcCCc
Q 027793           97 KCLHLINCNMIRSLPEL---PFCLNYLNTSDCKRLQSLPK  133 (219)
Q Consensus        97 ~~L~l~~~~~l~~lp~~---~~~L~~L~l~~~~~l~~lp~  133 (219)
                      ++|++++| .++.+|..   +++|++|++++| .++.++.
T Consensus       222 ~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~  259 (305)
T d1xkua_         222 RELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGS  259 (305)
T ss_dssp             CEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred             eeeecccc-cccccccccccccCCCEEECCCC-ccCccCh
Confidence            66666654 33445433   245666666553 4555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-13  Score=106.24  Aligned_cols=154  Identities=21%  Similarity=0.229  Sum_probs=113.3

Q ss_pred             CCccEEEee-cCCCcccCc-cccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEE
Q 027793            2 ELLQEIDLF-LSGIKELPS-SIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLE   77 (219)
Q Consensus         2 ~~L~~L~l~-~~~i~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~   77 (219)
                      ..++.+++. .+.++.++. .+..+++|++|++++|......+..+..+++|+.+++++|.+. + +..+..+++|+.|+
T Consensus        80 ~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~  159 (284)
T d1ozna_          80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (284)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcc
Confidence            356666665 467777654 4888999999999998766656667778899999999999876 4 45678889999999


Q ss_pred             ecCCcCCccc-hhhhCCCCCCEEeccCCCCCCcCCCCC---CCCCeEeccCCcCCCcCC-ccccCCCCCccccCCCCCCC
Q 027793           78 LSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPELP---FCLNYLNTSDCKRLQSLP-KISSCLETPSNQTRGNSYLP  152 (219)
Q Consensus        78 l~~n~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~~~---~~L~~L~l~~~~~l~~lp-~~~~~~~~~~~~~~~~~~~l  152 (219)
                      +++|.++.++ .++..+++|+.+++++|......|..+   ++|++|++++|. +..++ ..+...           ..+
T Consensus       160 l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~-----------~~L  227 (284)
T d1ozna_         160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPL-----------RAL  227 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTC-----------TTC
T ss_pred             cccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc-cccccccccccc-----------ccc
Confidence            9999999775 467889999999999977665556543   689999999865 55555 344333           245


Q ss_pred             eEEEEcCCcccccccc
Q 027793          153 VMFKFVNCVKLHKGTE  168 (219)
Q Consensus       153 ~~l~~~~c~~l~~~~~  168 (219)
                      +.+++++- .+.-.+.
T Consensus       228 ~~L~l~~N-~l~C~C~  242 (284)
T d1ozna_         228 QYLRLNDN-PWVCDCR  242 (284)
T ss_dssp             CEEECCSS-CEECSGG
T ss_pred             CEEEecCC-CCCCCcc
Confidence            57888764 3433343

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.1e-13  Score=104.36  Aligned_cols=173  Identities=21%  Similarity=0.193  Sum_probs=103.4

Q ss_pred             CCccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCC-------------------------ccccCCCCCCcEEe
Q 027793            2 ELLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFL-------------------------PESLCNLKKLQKLC   55 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~-------------------------p~~~~~l~~L~~L~   55 (219)
                      +++++|++++|+|+.+|.. |..+++|++|++++|.+....                         +..+.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            3578999999999998864 888999999999887543222                         23445566666666


Q ss_pred             ccccccc--ccccCCCCCCCCEEEecCCcCCccc-hhhhCCCCCCEEeccCCCCCCcCCC-C---CCCCCeEeccCCcCC
Q 027793           56 LSQCRCL--ILSGLSSLSSLKCLELSGHNFESLP-TGISQLQRLKCLHLINCNMIRSLPE-L---PFCLNYLNTSDCKRL  128 (219)
Q Consensus        56 l~~~~~~--~p~~~~~l~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~l~~~~~l~~lp~-~---~~~L~~L~l~~~~~l  128 (219)
                      +++|...  .+..+...++|+.+++++|.++.+| ..+..+++|+.|++++|. ++.++. .   +++|+.+++++|...
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccchhhhccccccchhhhhhcccc
Confidence            6666654  2334555666777777777776554 345566667777777653 343432 2   356777777665433


Q ss_pred             CcCCccccCCCCCccccCCCCCCCeEEEEcCCcccccccccchhHhHHHHHhhhCCCccc
Q 027793          129 QSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILH  188 (219)
Q Consensus       129 ~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~~~  188 (219)
                      .-.|..+..+           ..++.++++++ .+...+. ..+.....+...++.++..
T Consensus       191 ~i~~~~f~~l-----------~~L~~L~l~~N-~i~~~~~-~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         191 HVHPHAFRDL-----------GRLMTLYLFAN-NLSALPT-EALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             EECTTTTTTC-----------TTCCEEECCSS-CCSCCCH-HHHTTCTTCCEEECCSSCE
T ss_pred             ccChhHhhhh-----------hhccccccccc-ccccccc-cccccccccCEEEecCCCC
Confidence            3334444333           13457777665 4444432 3344445555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=5.9e-13  Score=91.46  Aligned_cols=97  Identities=22%  Similarity=0.300  Sum_probs=80.4

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc--ccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL--SGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p--~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.|+++|+.++.+++|++|++++|.+ +.+| .+..+++|++|++++|.+. ++  ..+..+++|+.++
T Consensus        19 l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i-~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          19 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcchhhhhhhhcccccccccccc-cccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEE
Confidence            4689999999999999998899999999999999955 4555 5899999999999999986 33  4678899999999


Q ss_pred             ecCCcCCccc---hh-hhCCCCCCEE
Q 027793           78 LSGHNFESLP---TG-ISQLQRLKCL   99 (219)
Q Consensus        78 l~~n~l~~lp---~~-l~~l~~L~~L   99 (219)
                      +++|+++..+   .. ...+++|+.+
T Consensus        97 l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          97 LQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999987443   32 3456777665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=2e-12  Score=104.33  Aligned_cols=82  Identities=22%  Similarity=0.257  Sum_probs=37.6

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n   81 (219)
                      ++++.+++++|.++++++ +...++|+.|++++|.+. .++ .+..+++|+.+++++|.+.....+..+++|+.++++++
T Consensus       197 ~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~  273 (384)
T d2omza2         197 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN  273 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             cccceeeccCCccCCCCc-ccccCCCCEEECCCCCCC-Ccc-hhhcccccchhccccCccCCCCcccccccCCEeeccCc
Confidence            344555555555554433 334445555555554322 222 34445555555555554432223444455555555554


Q ss_pred             cCCcc
Q 027793           82 NFESL   86 (219)
Q Consensus        82 ~l~~l   86 (219)
                      .++.+
T Consensus       274 ~l~~~  278 (384)
T d2omza2         274 QISNI  278 (384)
T ss_dssp             CCCCC
T ss_pred             ccCCC
Confidence            44433

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.8e-13  Score=96.74  Aligned_cols=101  Identities=20%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             CCCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-cc--ccCCCCCCCCEEE
Q 027793            1 MELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-IL--SGLSSLSSLKCLE   77 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p--~~~~~l~~L~~L~   77 (219)
                      +++|++|++++|.|++++. +..+++|++|++++|.+....+..+..+++|++|++++|.+. ++  ..+..+++|++++
T Consensus        40 l~~L~~L~Ls~N~i~~l~~-~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~  118 (162)
T d1a9na_          40 LDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC  118 (162)
T ss_dssp             TTCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred             cccCCEEECCCCCCCccCC-cccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhh
Confidence            4689999999999999965 889999999999999665444444567999999999999976 33  3578899999999


Q ss_pred             ecCCcCCccch----hhhCCCCCCEEecc
Q 027793           78 LSGHNFESLPT----GISQLQRLKCLHLI  102 (219)
Q Consensus        78 l~~n~l~~lp~----~l~~l~~L~~L~l~  102 (219)
                      +++|+++..|.    .+..+++|+.||-.
T Consensus       119 l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         119 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            99999987774    47889999998743

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=5e-12  Score=101.98  Aligned_cols=161  Identities=24%  Similarity=0.249  Sum_probs=112.6

Q ss_pred             CCccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCC
Q 027793            2 ELLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n   81 (219)
                      ++|++|++++|.+++++. +..+++|+.+++++|.+.+ ++ .+..+++|++|+++++.+.-...+..++.++.+++.+|
T Consensus       219 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n  295 (384)
T d2omza2         219 TNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISN-LA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN  295 (384)
T ss_dssp             TTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS
T ss_pred             CCCCEEECCCCCCCCcch-hhcccccchhccccCccCC-CC-cccccccCCEeeccCcccCCCCcccccccccccccccc
Confidence            678999999999998764 7889999999999996654 33 37789999999999988763334667788888888888


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCC--CCCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcC
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLP--ELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVN  159 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp--~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~  159 (219)
                      .++.++ .+..+++++.|++++|+ +..++  ..+++|++|++++| .++.++. +..+           ..++.+++++
T Consensus       296 ~l~~~~-~~~~~~~l~~L~ls~n~-l~~l~~l~~l~~L~~L~L~~n-~l~~l~~-l~~l-----------~~L~~L~l~~  360 (384)
T d2omza2         296 QLEDIS-PISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFANN-KVSDVSS-LANL-----------TNINWLSAGH  360 (384)
T ss_dssp             CCSCCG-GGGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSS-CCCCCGG-GGGC-----------TTCCEEECCS
T ss_pred             cccccc-ccchhcccCeEECCCCC-CCCCcccccCCCCCEEECCCC-CCCCChh-HcCC-----------CCCCEEECCC
Confidence            877665 46777888888888764 34444  23577888888876 5666653 3222           1455777766


Q ss_pred             CcccccccccchhHhHHHHHhhhCC
Q 027793          160 CVKLHKGTERNFFANFQRRVHNALP  184 (219)
Q Consensus       160 c~~l~~~~~~~~~~~~~~~~~~~lp  184 (219)
                      + +++..+.   +..++++...++.
T Consensus       361 N-~l~~l~~---l~~l~~L~~L~L~  381 (384)
T d2omza2         361 N-QISDLTP---LANLTRITQLGLN  381 (384)
T ss_dssp             S-CCCBCGG---GTTCTTCSEEECC
T ss_pred             C-cCCCChh---hccCCCCCEeeCC
Confidence            5 5555432   3344444444333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=5.2e-15  Score=110.19  Aligned_cols=120  Identities=21%  Similarity=0.192  Sum_probs=82.4

Q ss_pred             ccEEEeecC--CCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecC
Q 027793            4 LQEIDLFLS--GIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSG   80 (219)
Q Consensus         4 L~~L~l~~~--~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~   80 (219)
                      .+.+++.+.  .++.++.++..+++|++|++++|.+. .++ .+..+++|++|++++|.+. +|.....+++|++|++++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            345555543  46667777888888888888887543 444 4777888888888888765 443333445788888888


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCCCCCcCC-----CCCCCCCeEeccCCcC
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCNMIRSLP-----ELPFCLNYLNTSDCKR  127 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp-----~~~~~L~~L~l~~~~~  127 (219)
                      |.++.++ .+..+++|+.|++++|. ++.++     ..+++|+.|++++|+.
T Consensus       103 N~i~~l~-~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         103 NQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccc-cccccccccccccccch-hccccccccccCCCccceeecCCCcc
Confidence            8888765 46777888888888754 34333     2356788888888653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.1e-14  Score=110.95  Aligned_cols=155  Identities=23%  Similarity=0.181  Sum_probs=96.6

Q ss_pred             CCccEEEeecCCCcc--cCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc----ccccCCCCCCCCE
Q 027793            2 ELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL----ILSGLSSLSSLKC   75 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~   75 (219)
                      .+|++|+++++.+..  ++..+..+++|++|++++|......+..++.+++|++|++++|...    +...+..+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            357888888877654  4445677888888888888665555667778888888888887543    2222345678888


Q ss_pred             EEecCCc-CC--ccchhhhC-CCCCCEEeccCCCC-CCc-----CCCCCCCCCeEeccCCcCCCcCC-ccccCCCCCccc
Q 027793           76 LELSGHN-FE--SLPTGISQ-LQRLKCLHLINCNM-IRS-----LPELPFCLNYLNTSDCKRLQSLP-KISSCLETPSNQ  144 (219)
Q Consensus        76 L~l~~n~-l~--~lp~~l~~-l~~L~~L~l~~~~~-l~~-----lp~~~~~L~~L~l~~~~~l~~lp-~~~~~~~~~~~~  144 (219)
                      |++++|. ++  .+...+.. .++|+.|++++|.. +..     +....++|++|++++|..+++-. ..+...      
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~------  199 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL------  199 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC------
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhccc------
Confidence            8888764 44  33333433 46788888876531 211     11223678888888777665321 222211      


Q ss_pred             cCCCCCCCeEEEEcCCccccccc
Q 027793          145 TRGNSYLPVMFKFVNCVKLHKGT  167 (219)
Q Consensus       145 ~~~~~~~l~~l~~~~c~~l~~~~  167 (219)
                           ..++.+++++|..+++..
T Consensus       200 -----~~L~~L~L~~C~~i~~~~  217 (284)
T d2astb2         200 -----NYLQHLSLSRCYDIIPET  217 (284)
T ss_dssp             -----TTCCEEECTTCTTCCGGG
T ss_pred             -----CcCCEEECCCCCCCChHH
Confidence                 145577777777776543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.7e-12  Score=97.65  Aligned_cols=175  Identities=15%  Similarity=0.159  Sum_probs=91.0

Q ss_pred             CccEEEeecCCCcccCcc-ccCCCCCcEEeccCCCCCCCCc-cccCCCCCCcEEeccccc-cc--ccccCCCCCCCCEEE
Q 027793            3 LLQEIDLFLSGIKELPSS-IEHIEGLKCLRLNSCTKLGFLP-ESLCNLKKLQKLCLSQCR-CL--ILSGLSSLSSLKCLE   77 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~~~-~~--~p~~~~~l~~L~~L~   77 (219)
                      ++++|++++|.|+.+|.. |.++++|++|++++|.....++ ..+..+++++++.+..+. ..  .+..+.++++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            567777777777776653 6667777777777765554433 245566677777665432 22  334466677777777


Q ss_pred             ecCCcCCccch--hhhCCCCCCEEeccCCCCCCcCCCC-----CCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCC
Q 027793           78 LSGHNFESLPT--GISQLQRLKCLHLINCNMIRSLPEL-----PFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSY  150 (219)
Q Consensus        78 l~~n~l~~lp~--~l~~l~~L~~L~l~~~~~l~~lp~~-----~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~  150 (219)
                      +++|.++..+.  .+..+..+..+..++ ..+..++..     ...++.|++.+ +.++.++......           .
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~~-----------~  176 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFNG-----------T  176 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTTT-----------C
T ss_pred             cchhhhcccccccccccccccccccccc-cccccccccccccccccceeeeccc-ccccccccccccc-----------h
Confidence            77777664442  112223333333332 333333321     13555666655 3455555433222           1


Q ss_pred             CCeEEEEcCCcccccccccchhHhHHHHHhhhCCCcccccc
Q 027793          151 LPVMFKFVNCVKLHKGTERNFFANFQRRVHNALPGILHRKV  191 (219)
Q Consensus       151 ~l~~l~~~~c~~l~~~~~~~~~~~~~~~~~~~lp~~~~~~l  191 (219)
                      .+..+....+.++++++. ..+..+..+...++.++..+.+
T Consensus       177 ~l~~~~~l~~n~l~~l~~-~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         177 QLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             CEEEEECTTCTTCCCCCT-TTTTTSCCCSEEECTTSCCCCC
T ss_pred             hhhccccccccccccccH-HHhcCCCCCCEEECCCCcCCcc
Confidence            233444445556666543 2344445555555555544433

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.6e-12  Score=90.92  Aligned_cols=102  Identities=21%  Similarity=0.139  Sum_probs=70.2

Q ss_pred             ccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCC-ccccCCCCCCcEEeccccccc-c-cccCCCCCCCCEEEecC
Q 027793            4 LQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFL-PESLCNLKKLQKLCLSQCRCL-I-LSGLSSLSSLKCLELSG   80 (219)
Q Consensus         4 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~-~-p~~~~~l~~L~~L~l~~   80 (219)
                      .+.++.+++++.++|..+..+++|++|++.++..++.+ +..|..+++|+.|++++|.+. + +..|..+++|++|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            44566677777777777777778888888766444444 345777777777777777765 3 45577777777777777


Q ss_pred             CcCCccchhhhCCCCCCEEeccCCC
Q 027793           81 HNFESLPTGISQLQRLKCLHLINCN  105 (219)
Q Consensus        81 n~l~~lp~~l~~l~~L~~L~l~~~~  105 (219)
                      |+++.+|.......+|+.|++++|+
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             CCCcccChhhhccccccccccCCCc
Confidence            7777777655445567777777754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.32  E-value=2.6e-11  Score=96.25  Aligned_cols=58  Identities=22%  Similarity=0.180  Sum_probs=44.5

Q ss_pred             CCCCCEEeccCCCCCCcCCCCCCCCCeEeccCCcCCCcCCccccCCCCCccccCCCCCCCeEEEEcCCccccccc
Q 027793           93 LQRLKCLHLINCNMIRSLPELPFCLNYLNTSDCKRLQSLPKISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGT  167 (219)
Q Consensus        93 l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~  167 (219)
                      +++|++|++++| .+..+|..+++|+.|++++| .++++|....              .++.+++++|+ ++..+
T Consensus       283 ~~~L~~L~Ls~N-~l~~lp~~~~~L~~L~L~~N-~L~~l~~~~~--------------~L~~L~L~~N~-L~~lp  340 (353)
T d1jl5a_         283 PPSLEELNVSNN-KLIELPALPPRLERLIASFN-HLAEVPELPQ--------------NLKQLHVEYNP-LREFP  340 (353)
T ss_dssp             CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCT--------------TCCEEECCSSC-CSSCC
T ss_pred             CCCCCEEECCCC-ccCccccccCCCCEEECCCC-cCCccccccC--------------CCCEEECcCCc-CCCCC
Confidence            367999999986 46788988899999999886 5788875432              34588888885 77765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.4e-12  Score=100.62  Aligned_cols=149  Identities=19%  Similarity=0.205  Sum_probs=106.4

Q ss_pred             CCCccEEEeecCCCcc-cCccccCCCCCcEEeccCCCCCCC--CccccCCCCCCcEEeccccccc----ccccC-CCCCC
Q 027793            1 MELLQEIDLFLSGIKE-LPSSIEHIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQCRCL----ILSGL-SSLSS   72 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~----~p~~~-~~l~~   72 (219)
                      +++|++|+++++.+.+ .+..+.++++|++|++++|...+.  +...+..+++|++|++++|...    +...+ ...++
T Consensus        70 c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~  149 (284)
T d2astb2          70 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  149 (284)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccc
Confidence            4789999999998876 555688899999999999865542  2223456899999999998643    22222 23478


Q ss_pred             CCEEEecCCc--CC--ccchhhhCCCCCCEEeccCCCCCCc-CCC---CCCCCCeEeccCCcCCCcCCc-cccCCCCCcc
Q 027793           73 LKCLELSGHN--FE--SLPTGISQLQRLKCLHLINCNMIRS-LPE---LPFCLNYLNTSDCKRLQSLPK-ISSCLETPSN  143 (219)
Q Consensus        73 L~~L~l~~n~--l~--~lp~~l~~l~~L~~L~l~~~~~l~~-lp~---~~~~L~~L~l~~~~~l~~lp~-~~~~~~~~~~  143 (219)
                      |+.|+++++.  ++  .+...+.++++|++|++++|..++. ...   ..++|++|++++|..+++-.. .+..      
T Consensus       150 L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~------  223 (284)
T d2astb2         150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE------  223 (284)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG------
T ss_pred             cchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhc------
Confidence            9999999864  55  4555567899999999999876642 222   247899999999988764321 1111      


Q ss_pred             ccCCCCCCCeEEEEcCC
Q 027793          144 QTRGNSYLPVMFKFVNC  160 (219)
Q Consensus       144 ~~~~~~~~l~~l~~~~c  160 (219)
                           ...++.+++++|
T Consensus       224 -----~~~L~~L~l~~~  235 (284)
T d2astb2         224 -----IPTLKTLQVFGI  235 (284)
T ss_dssp             -----CTTCCEEECTTS
T ss_pred             -----CCCCCEEeeeCC
Confidence                 125668999888

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=6.6e-11  Score=89.74  Aligned_cols=62  Identities=23%  Similarity=0.314  Sum_probs=49.6

Q ss_pred             CCCccEEEeecCCCcc-cCc-cccCCCCCcEEeccCC-CCCCCCccccCCCCCCcEEeccccccc
Q 027793            1 MELLQEIDLFLSGIKE-LPS-SIEHIEGLKCLRLNSC-TKLGFLPESLCNLKKLQKLCLSQCRCL   62 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~-lp~-~~~~l~~L~~L~l~~~-~~~~~~p~~~~~l~~L~~L~l~~~~~~   62 (219)
                      +++|++|++++|.+.+ ++. .|..+++++++.+..+ ......+..+..+++|+++++++|.+.
T Consensus        52 l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          52 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence            5789999999998876 554 4788999999998764 344455567889999999999998765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.12  E-value=6.4e-13  Score=98.63  Aligned_cols=149  Identities=18%  Similarity=0.169  Sum_probs=94.8

Q ss_pred             CCcEEeccCC-CCCCCCccccCCCCCCcEEecccccccccccCCCCCCCCEEEecCCcCCccchhhhCCCCCCEEeccCC
Q 027793           26 GLKCLRLNSC-TKLGFLPESLCNLKKLQKLCLSQCRCLILSGLSSLSSLKCLELSGHNFESLPTGISQLQRLKCLHLINC  104 (219)
Q Consensus        26 ~L~~L~l~~~-~~~~~~p~~~~~l~~L~~L~l~~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~~  104 (219)
                      ..+.+++.+. .....++..+..+++|++|++++|.+.-.+.+..+++|+.|++++|.++.+|.....+++|+.|++++|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccc
Confidence            3455566543 124456667888888888888888876323577788888888888888888765566677888888885


Q ss_pred             CCCCcCCCC--CCCCCeEeccCCcCCCcCCc--cccCCCCCccccCCCCCCCeEEEEcCCcccccccccchhHhHHHHHh
Q 027793          105 NMIRSLPEL--PFCLNYLNTSDCKRLQSLPK--ISSCLETPSNQTRGNSYLPVMFKFVNCVKLHKGTERNFFANFQRRVH  180 (219)
Q Consensus       105 ~~l~~lp~~--~~~L~~L~l~~~~~l~~lp~--~~~~~~~~~~~~~~~~~~l~~l~~~~c~~l~~~~~~~~~~~~~~~~~  180 (219)
                       .++.++..  +++|+.|++++| .++.++.  .+..+           ..++.+++++++-....+.......+.....
T Consensus       104 -~i~~l~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l-----------~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi  170 (198)
T d1m9la_         104 -QIASLSGIEKLVNLRVLYMSNN-KITNWGEIDKLAAL-----------DKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             -ECCCHHHHHHHHHSSEEEESEE-ECCCHHHHHHHTTT-----------TTCSEEEECSSHHHHHHCTTTTHHHHHHHHH
T ss_pred             -cccccccccccccccccccccc-hhccccccccccCC-----------CccceeecCCCccccCcccccchhhHHHHHH
Confidence             44555432  367888888875 4555542  22222           1455888888754433333333444455555


Q ss_pred             hhCCCcc
Q 027793          181 NALPGIL  187 (219)
Q Consensus       181 ~~lp~~~  187 (219)
                      ..+|.+.
T Consensus       171 ~~lp~L~  177 (198)
T d1m9la_         171 KRLPNLK  177 (198)
T ss_dssp             HHCSSCC
T ss_pred             HHCCCcC
Confidence            6677654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.2e-09  Score=77.55  Aligned_cols=101  Identities=21%  Similarity=0.159  Sum_probs=78.6

Q ss_pred             CCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccc-cc-c-cccCCCCCCCCEEEecCCcCCcc-chhhhCCCCCCEE
Q 027793           24 IEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCR-CL-I-LSGLSSLSSLKCLELSGHNFESL-PTGISQLQRLKCL   99 (219)
Q Consensus        24 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~-~-p~~~~~l~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L   99 (219)
                      ......++.+++ .....|..+..+++|++|++++++ +. + +..|.++++|+.|++++|+|+.+ +.+|..+++|++|
T Consensus         7 c~~~~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            344566777775 445567788889999999998765 44 4 46789999999999999999987 4568999999999


Q ss_pred             eccCCCCCCcCCCCC---CCCCeEeccCCc
Q 027793          100 HLINCNMIRSLPELP---FCLNYLNTSDCK  126 (219)
Q Consensus       100 ~l~~~~~l~~lp~~~---~~L~~L~l~~~~  126 (219)
                      ++++| .++.+|...   ..|++|++++|+
T Consensus        86 ~Ls~N-~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          86 NLSFN-ALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             ECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             eccCC-CCcccChhhhccccccccccCCCc
Confidence            99995 456777532   468888888864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.96  E-value=4.2e-09  Score=83.15  Aligned_cols=108  Identities=26%  Similarity=0.386  Sum_probs=80.9

Q ss_pred             CccEEEeecCCCcccCccccCCCCCcEEeccCCCCCCCCccccCCCCCCcEEeccccccc-ccccCCCCCCCCEEEecCC
Q 027793            3 LLQEIDLFLSGIKELPSSIEHIEGLKCLRLNSCTKLGFLPESLCNLKKLQKLCLSQCRCL-ILSGLSSLSSLKCLELSGH   81 (219)
Q Consensus         3 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~-~p~~~~~l~~L~~L~l~~n   81 (219)
                      ++++|++++++++.+|+.   .++|++|++++|. ++.+|..   +.+|+.|++++|.+. ++. +  .+.|++|++++|
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~-l~~lp~~---~~~L~~L~l~~n~l~~l~~-l--p~~L~~L~L~~n  108 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNS-LTELPEL---PQSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNN  108 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSCCCS-C--CTTCCEEECCSS
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCC-Ccccccc---hhhhhhhhhhhcccchhhh-h--cccccccccccc
Confidence            588999999999999974   4689999999985 4577764   468999999999865 332 1  146999999999


Q ss_pred             cCCccchhhhCCCCCCEEeccCCCCCCcCCCCCCCCCeEec
Q 027793           82 NFESLPTGISQLQRLKCLHLINCNMIRSLPELPFCLNYLNT  122 (219)
Q Consensus        82 ~l~~lp~~l~~l~~L~~L~l~~~~~l~~lp~~~~~L~~L~l  122 (219)
                      .++.+|. ++.+++|+.|++++|.. ...+.....+..+.+
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~  147 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIAA  147 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCC-SCCCCCCTTCCEEEC
T ss_pred             ccccccc-hhhhccceeeccccccc-cccccccccccchhh
Confidence            9999984 67899999999998643 444443333333333

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.1e-09  Score=86.74  Aligned_cols=104  Identities=19%  Similarity=0.257  Sum_probs=81.5

Q ss_pred             CCccEEEeecCCCcc--cCccccCCCCCcEEeccCCCCCC----CCccccCCCCCCcEEeccccccc------ccccCC-
Q 027793            2 ELLQEIDLFLSGIKE--LPSSIEHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCL------ILSGLS-   68 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~------~p~~~~-   68 (219)
                      .+|++||++++++++  +..-+..++++++|++++|.+..    .++..+..+++|++|++++|.+.      +...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            368999999999987  34446778999999999996542    23455678999999999999875      333343 


Q ss_pred             CCCCCCEEEecCCcCCc-----cchhhhCCCCCCEEeccCCC
Q 027793           69 SLSSLKCLELSGHNFES-----LPTGISQLQRLKCLHLINCN  105 (219)
Q Consensus        69 ~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~~~  105 (219)
                      ..++|++|++++|.++.     ++..+..+++|++|++++|.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            23579999999999873     45667889999999999875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.48  E-value=3.6e-08  Score=78.23  Aligned_cols=126  Identities=17%  Similarity=0.219  Sum_probs=89.5

Q ss_pred             CCCccEEEeecCCCcc-----cCc---------cccCCCCCcEEeccCCCCCCC----CccccCCCCCCcEEeccccccc
Q 027793            1 MELLQEIDLFLSGIKE-----LPS---------SIEHIEGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRCL   62 (219)
Q Consensus         1 l~~L~~L~l~~~~i~~-----lp~---------~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~~   62 (219)
                      .++|++|++++|.+..     +..         .....+.|+.+++++|.+...    +...+...+.|+.|++++|.+.
T Consensus       120 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  199 (344)
T d2ca6a1         120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  199 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             cccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccc
Confidence            3679999999987642     111         124567899999988855322    3334566789999999999865


Q ss_pred             -------ccccCCCCCCCCEEEecCCcCC-----ccchhhhCCCCCCEEeccCCCCCCc----C----CC-CCCCCCeEe
Q 027793           63 -------ILSGLSSLSSLKCLELSGHNFE-----SLPTGISQLQRLKCLHLINCNMIRS----L----PE-LPFCLNYLN  121 (219)
Q Consensus        63 -------~p~~~~~l~~L~~L~l~~n~l~-----~lp~~l~~l~~L~~L~l~~~~~l~~----l----p~-~~~~L~~L~  121 (219)
                             +...+..+++|+.|++++|.++     .+...+..+++|++|++++|.....    +    .. ....|++|+
T Consensus       200 ~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~  279 (344)
T d2ca6a1         200 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR  279 (344)
T ss_dssp             HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred             ccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEE
Confidence                   2345667889999999999875     2455677889999999999864321    1    11 125799999


Q ss_pred             ccCCc
Q 027793          122 TSDCK  126 (219)
Q Consensus       122 l~~~~  126 (219)
                      +++|.
T Consensus       280 ls~N~  284 (344)
T d2ca6a1         280 LQYNE  284 (344)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            99974

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.32  E-value=1.8e-07  Score=74.02  Aligned_cols=126  Identities=17%  Similarity=0.094  Sum_probs=91.7

Q ss_pred             CCccEEEeecCCCcc-----cCccccCCCCCcEEeccCCCCCCC-----CccccCCCCCCcEEeccccccc------ccc
Q 027793            2 ELLQEIDLFLSGIKE-----LPSSIEHIEGLKCLRLNSCTKLGF-----LPESLCNLKKLQKLCLSQCRCL------ILS   65 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~------~p~   65 (219)
                      +.|+.+++++|.+..     +...+...++|+.|++++|.+...     +...+..+++|++|++++|.+.      +..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            468899999988764     334466788999999999865432     3345667899999999999865      445


Q ss_pred             cCCCCCCCCEEEecCCcCCc-----cchhhhC--CCCCCEEeccCCCCCC----cCCC----CCCCCCeEeccCCcC
Q 027793           66 GLSSLSSLKCLELSGHNFES-----LPTGISQ--LQRLKCLHLINCNMIR----SLPE----LPFCLNYLNTSDCKR  127 (219)
Q Consensus        66 ~~~~l~~L~~L~l~~n~l~~-----lp~~l~~--l~~L~~L~l~~~~~l~----~lp~----~~~~L~~L~l~~~~~  127 (219)
                      .+..+++|++|++++|.++.     +-..+..  ...|++|++++|+...    .+..    ..+.|+.|++++|..
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            67788999999999999872     3334443  3679999999976322    1111    135799999998653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.4e-08  Score=70.99  Aligned_cols=60  Identities=28%  Similarity=0.281  Sum_probs=26.6

Q ss_pred             CCCCCcEEeccccccc----ccccCCCCCCCCEEEecCCcCCccch-hhhCCCCCCEEeccCCCC
Q 027793           47 NLKKLQKLCLSQCRCL----ILSGLSSLSSLKCLELSGHNFESLPT-GISQLQRLKCLHLINCNM  106 (219)
Q Consensus        47 ~l~~L~~L~l~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~~~~  106 (219)
                      .+++|++|++++|.+.    ++..+..+++|+.|++++|.++++++ ......+|+.+++++|+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTT
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCc
Confidence            3445555555555443    12223344555555555555554433 112223445555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=7.8e-07  Score=72.04  Aligned_cols=127  Identities=25%  Similarity=0.251  Sum_probs=84.9

Q ss_pred             CCccEEEeecCCCccc-----CccccCCCCCcEEeccCCCCCCC----Ccccc-CCCCCCcEEeccccccc------ccc
Q 027793            2 ELLQEIDLFLSGIKEL-----PSSIEHIEGLKCLRLNSCTKLGF----LPESL-CNLKKLQKLCLSQCRCL------ILS   65 (219)
Q Consensus         2 ~~L~~L~l~~~~i~~l-----p~~~~~l~~L~~L~l~~~~~~~~----~p~~~-~~l~~L~~L~l~~~~~~------~p~   65 (219)
                      ..++.+++++|.+...     ...+...+.++.+++++|.+...    +...+ .....|+.+++++|.+.      +..
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccc
Confidence            4688999999887752     22355678899999998865321    11122 23467999999998765      223


Q ss_pred             cCCCCCCCCEEEecCCcCC-----ccchhhh-CCCCCCEEeccCCCCCC----cCCCC---CCCCCeEeccCCcCCC
Q 027793           66 GLSSLSSLKCLELSGHNFE-----SLPTGIS-QLQRLKCLHLINCNMIR----SLPEL---PFCLNYLNTSDCKRLQ  129 (219)
Q Consensus        66 ~~~~l~~L~~L~l~~n~l~-----~lp~~l~-~l~~L~~L~l~~~~~l~----~lp~~---~~~L~~L~l~~~~~l~  129 (219)
                      .+...++|++|++++|.++     .++..+. ..+.|++|++++|+...    .++..   .++|++|++++| .++
T Consensus       335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~  410 (460)
T d1z7xw1         335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLG  410 (460)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCC
T ss_pred             ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCC-cCC
Confidence            3445678999999999886     2444453 45679999999986432    12222   268999999986 444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.6e-07  Score=66.64  Aligned_cols=80  Identities=19%  Similarity=0.107  Sum_probs=58.1

Q ss_pred             ccCCCCCcEEeccCCCCCCC--CccccCCCCCCcEEeccccccc-ccc-cCCCCCCCCEEEecCCcCCcc-c-------h
Q 027793           21 IEHIEGLKCLRLNSCTKLGF--LPESLCNLKKLQKLCLSQCRCL-ILS-GLSSLSSLKCLELSGHNFESL-P-------T   88 (219)
Q Consensus        21 ~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~-~p~-~~~~l~~L~~L~l~~n~l~~l-p-------~   88 (219)
                      +..+++|++|++++|.+...  ++..+..+++|+.|++++|.+. +++ ......+|+.+++++|++... .       .
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            45688999999999966543  3445667899999999999977 322 122345789999999998633 2       2


Q ss_pred             hhhCCCCCCEEe
Q 027793           89 GISQLQRLKCLH  100 (219)
Q Consensus        89 ~l~~l~~L~~L~  100 (219)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            356789999886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.11  E-value=1.7e-06  Score=61.41  Aligned_cols=81  Identities=20%  Similarity=0.249  Sum_probs=40.5

Q ss_pred             CCCCcEEeccCCCCCCC-----CccccCCCCCCcEEeccccccc------ccccCCCCCCCCEEEecCCcCC-----ccc
Q 027793           24 IEGLKCLRLNSCTKLGF-----LPESLCNLKKLQKLCLSQCRCL------ILSGLSSLSSLKCLELSGHNFE-----SLP   87 (219)
Q Consensus        24 l~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~------~p~~~~~l~~L~~L~l~~n~l~-----~lp   87 (219)
                      .++|+.|+++++...+.     +-..+...++|++|++++|.+.      +...+...+.|+.|++++|.++     .+-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            35566666654322211     1223444555666666666543      2223334455666666666655     122


Q ss_pred             hhhhCCCCCCEEeccCC
Q 027793           88 TGISQLQRLKCLHLINC  104 (219)
Q Consensus        88 ~~l~~l~~L~~L~l~~~  104 (219)
                      .++...++|++|++++|
T Consensus        94 ~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHHhCCcCCEEECCCC
Confidence            34455556666666653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.60  E-value=1.3e-05  Score=56.42  Aligned_cols=80  Identities=18%  Similarity=0.178  Sum_probs=43.0

Q ss_pred             CCCCCcEEeccCCCCCCC-----CccccCCCCCCcEEeccccccc------ccccCCCCCCCCEEEecCCcCC-----cc
Q 027793           23 HIEGLKCLRLNSCTKLGF-----LPESLCNLKKLQKLCLSQCRCL------ILSGLSSLSSLKCLELSGHNFE-----SL   86 (219)
Q Consensus        23 ~l~~L~~L~l~~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~------~p~~~~~l~~L~~L~l~~n~l~-----~l   86 (219)
                      +.++|++|+++++...+.     +-..+...++|++|++++|.+.      +-..+...++++.+++++|.++     .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            446666666665322221     2223445666777777766544      2233444566677777766654     23


Q ss_pred             chhhhCCCCCCEEecc
Q 027793           87 PTGISQLQRLKCLHLI  102 (219)
Q Consensus        87 p~~l~~l~~L~~L~l~  102 (219)
                      ...+...++|+.++++
T Consensus        95 ~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          95 VEALQSNTSLIELRID  110 (166)
T ss_dssp             HHGGGGCSSCCEEECC
T ss_pred             HHHHHhCccccEEeec
Confidence            3445556666665554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.58  E-value=2.9e-05  Score=54.77  Aligned_cols=62  Identities=11%  Similarity=0.008  Sum_probs=29.7

Q ss_pred             ccCCCCCcEEeccCCCCCC----CCccccCCCCCCcEEeccccccc------ccccCCCCCCCCEEEecCCc
Q 027793           21 IEHIEGLKCLRLNSCTKLG----FLPESLCNLKKLQKLCLSQCRCL------ILSGLSSLSSLKCLELSGHN   82 (219)
Q Consensus        21 ~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~------~p~~~~~l~~L~~L~l~~n~   82 (219)
                      +...++|++|++++|.+..    .+.+.+...+.|++|++++|.+.      +-..+...++|++|++++|.
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            3344555555555554321    12223333455555555555543      22344445555555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.68  E-value=0.00085  Score=46.67  Aligned_cols=40  Identities=15%  Similarity=-0.006  Sum_probs=17.4

Q ss_pred             cCCCCCcEEeccCCCCCCC----CccccCCCCCCcEEecccccc
Q 027793           22 EHIEGLKCLRLNSCTKLGF----LPESLCNLKKLQKLCLSQCRC   61 (219)
Q Consensus        22 ~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~~~~   61 (219)
                      ...++|++|++++|.+...    +...+...++++.+++++|..
T Consensus        43 ~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          43 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            3445555555555533221    112233344555555555544