Citrus Sinensis ID: 027800

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPVQREGGFYYRESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSSSVKWMSSKMRLMKKMMYSSPDAAAMQKLEDHQKQPPSSSLEPDNGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPMLVFFFCVYIINSLFY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEEEccccccccccccccccEccccccccccccccccccccHHHHHcccccccccccccccccccccccccccEccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccEEEHHHccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mtpnyhlspvtpfplelkedqllnlnqppsssspaschnffepvqreggfyyresvllrhpKEVRILYSqaagscdhpgpavmdesgsestglklsmssekeerndqnqsensssVKWMSSKMRLMKKMMYSSPDAAAMQKledhqkqppssslepdngnnnnntntiRVCAdcnttktplwrsgprgpkvTKLILSIEKLPMLVFFFCVYIINSLFY
Flexible Loop (DISEMBL)
mtpnyhlspvTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPVQREGGFYYRESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMssekeerndqnqsensssvkwMSSKMRLMKKMMYSSPDAAAMQKLEDHQKqppssslepdngnnnnNTNTIRVCADCNTtktplwrsgprgpKVTKLILSIEKLPMLVFFFCVYIINSLFY
Low Complexity Region (SEG)
MTPNYHLSPVTPFPLELKEDQLLNLNQppsssspasCHNFFEPVQREGGFYYRESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSSSVkwmsskmrlmkkmmyssPDAAAMQKLEDHQKQPPSSSLEPDngnnnnntntIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPMLVFFFCVYIINSLFY
Disordered region (IsUnstruct)
*************************************HNFFEPVQREGGFYYRESVLLRHPKEVRILYSQA************************************************************************************************IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPMLVFFFCVYIINSLF*
Disordered Region (DISOPRED)
**P*****PVT***LELKEDQLLN**********ASCHNFFEPV*******************************************************************************************************************************ADCNTTKTPLWRS***********LSIEKLPMLVFFFCVYIINSLFY
Disordered Region (DISEMBL)
********PVTPFPLELKEDQLLNLN**********CHNFFEPVQREGGFYYRESVLLRHPKEVRILYSQAAGSCDHPGP*************************************WMSSKMRLMKKMMYSSPD*********************DNGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPMLVFFFCVYIINSLFY
Disordered Region (DISPRO)
*TPNYHLSPVTPFPLELKEDQLLNLNQ**S*SSPASCHNF*EPV*REGGFYYRESVLLRHPKEVRILYSQAAGSC*HP*P************************************************************************************TNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPMLVFFFCVYIINSLFY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPVQREGGFYYRESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSSSVKWMSSKMRLMKKMMYSSPDAAAMQKLEDHQKQPPSSSLEPDNGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPMLVFFFCVYIINSLFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q9SZI6	352	Putative GATA transcripti	yes	no	0.412	0.255	0.434	2e-14
Q5HZ36	398	GATA transcription factor	no	no	0.605	0.331	0.325	3e-11
Q8LC59	120	GATA transcription factor	no	no	0.114	0.208	0.68	0.0001
Q9FJ10	139	GATA transcription factor	no	no	0.142	0.223	0.580	0.0001
Q8LC79	295	GATA transcription factor	no	no	0.100	0.074	0.772	0.0003
Q6QPM2	211	GATA transcription factor	no	no	0.100	0.104	0.772	0.0003

>sp|Q9SZI6|GAT22_ARATH Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 25/115 (21%)

Query: 91  TGLKLSMSSEKEERNDQNQSE----------NSSSVKWMSSKMRLMKK--MMYSSPDAAA 138
           T LKL++   K++ N Q+Q++           ++S+KW+SSK+RLMKK   + ++ D++ 
Sbjct: 116 TRLKLTI---KKKDNHQDQTDLPQSPIKDMTGTNSLKWISSKVRLMKKKKAIITTSDSS- 171

Query: 139 MQKLEDHQKQPPSSSL---EPDNGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPK 190
               + H     SS+L   E  NG NN+    IR+C+DCNTTKTPLWRSGPRGPK
Sbjct: 172 ----KQHTNNDQSSNLSNSERQNGYNNDCV--IRICSDCNTTKTPLWRSGPRGPK 220

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5HZ36|GAT21_ARATH GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 85/181 (46%), Gaps = 49/181 (27%)

Query: 51  YYRESVLLRHPKEVRILYSQAAGS-CDHPGPAVMDESGSESTGLKLSMSSEKEERN---- 105
           Y+ + + L  P + ++  +    S CDH  P        + T LKL++  +  E      
Sbjct: 79  YHADHLHLSQPLKAKMFVANGGSSACDHMVP-------KKETRLKLTIRKKDHEDQPHPL 131

Query: 106 DQNQSE-NSSSVKW-MSSKMRLMKKMMYSS------------------PDAAAMQKLEDH 145
            QN ++ +S S KW MS KMRL+KK + ++                  P        EDH
Sbjct: 132 HQNPTKPDSDSDKWLMSPKMRLIKKTITNNKQLIDQTNNNNHKESDHYPLNHKTNFDEDH 191

Query: 146 Q----------KQPPSSSLEP------DNGNNNNNTNTIRVCADCNTTKTPLWRSGPRGP 189
                      ++  +++ E       +NG +NNN   IRVC+DCNTTKTPLWRSGPRGP
Sbjct: 192 HEDLNFKNVLTRKTTAATTENRYNTINENGYSNNN-GVIRVCSDCNTTKTPLWRSGPRGP 250

Query: 190 K 190
           K
Sbjct: 251 K 251

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC59|GAT23_ARATH GATA transcription factor 23 OS=Arabidopsis thaliana GN=GATA23 PE=2 SV=2

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 20/25 (80%)

Query: 166 NTIRVCADCNTTKTPLWRSGPRGPK 190
            TIR C++C TTKTP+WR GP GPK
Sbjct: 23  GTIRCCSECKTTKTPMWRGGPTGPK 47

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ10|GAT16_ARATH GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 160 NNNNNTNTIRVCADCNTTKTPLWRSGPRGPK 190
           NN +  +  + CADC T+KTPLWR GP GPK
Sbjct: 27  NNTSVNDKKKTCADCGTSKTPLWRGGPVGPK 57

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC79|GAT18_ARATH GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/22 (77%), Positives = 20/22 (90%)

Query: 169 RVCADCNTTKTPLWRSGPRGPK 190
           R CA+C+TT TPLWR+GPRGPK
Sbjct: 152 RRCANCDTTSTPLWRNGPRGPK 173

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6QPM2|GAT19_ARATH GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/22 (77%), Positives = 20/22 (90%)

Query: 169 RVCADCNTTKTPLWRSGPRGPK 190
           R CA+C+TT TPLWR+GPRGPK
Sbjct: 75  RRCANCDTTSTPLWRNGPRGPK 96

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
255546095	312	hypothetical protein RCOM_1046780 [Ricin	0.834	0.583	0.410	5e-26
225444922	309	PREDICTED: uncharacterized protein LOC10	0.825	0.582	0.470	2e-23
225429550	306	PREDICTED: putative GATA transcription f	0.844	0.601	0.4	2e-20
302398801	359	GATA domain class transcription factor [	0.830	0.504	0.401	5e-17
356550705	314	PREDICTED: GATA transcription factor 21-	0.793	0.550	0.345	2e-16
356564796	322	PREDICTED: putative GATA transcription f	0.825	0.559	0.370	5e-16
302398795	342	GATA domain class transcription factor [	0.830	0.529	0.377	2e-15
356556282	315	PREDICTED: putative GATA transcription f	0.811	0.561	0.370	9e-15
147805325	211	hypothetical protein VITISV_032017 [Viti	0.385	0.398	0.549	3e-14
356554076	306	PREDICTED: putative GATA transcription f	0.770	0.549	0.350	1e-13

>gi|255546095|ref|XP_002514107.1| hypothetical protein RCOM_1046780 [Ricinus communis] gi|223546563|gb|EEF48061.1| hypothetical protein RCOM_1046780 [Ricinus communis]

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/207 (41%), Positives = 118/207 (57%), Gaps = 25/207 (12%)

Query: 1   MTPNYHLSPVTPFPLELKEDQ----LLNLNQPPSSSSPASCHN----FFEPVQREGGFYY 52
           MTP YH S   PF ++L EDQ    L+  ++  +  + +S       F  P Q E G+Y+
Sbjct: 1   MTPTYH-SSFPPFTIDLNEDQHHHQLIFCSKTTTEDASSSSSISYPIFINPPQEEVGYYH 59

Query: 53  RESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSEN 112
           +E   L H +EV  +Y+    S DH      +E+G E     LS+  ++++        +
Sbjct: 60  KELQPLHH-QEVDNIYASHGRSWDHRIIKNENENGQE-----LSVCKKEDKSTSIEDQRD 113

Query: 113 SSSVKWMSSKMRLMKKMMY------SSPDAAAMQKLEDHQKQPPSSSLEPDNGNNN---N 163
           +SSVKWMSSKMRLM+KMM       ++   ++M KLED +K   S  L+ D  + N   N
Sbjct: 114 NSSVKWMSSKMRLMRKMMTTDQTVNTTQHTSSMHKLEDKEK-SRSLPLQDDYSSKNLSDN 172

Query: 164 NTNTIRVCADCNTTKTPLWRSGPRGPK 190
           + NTIRVC+DCNTTKTPLWRSGPRGPK
Sbjct: 173 SNNTIRVCSDCNTTKTPLWRSGPRGPK 199

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444922|ref|XP_002282173.1| PREDICTED: uncharacterized protein LOC100261004 [Vitis vinifera] gi|297738668|emb|CBI27913.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/206 (47%), Positives = 120/206 (58%), Gaps = 26/206 (12%)

Query: 1   MTPNY-HLSPVTPFPLELKEDQLLNLNQPP------SSSSPASCHNFFEPVQREGGFYYR 53
           MTPNY +  P  PFPL+L EDQ   L   P      SSSS  +C  FF P + +GG +YR
Sbjct: 1   MTPNYLNSPPPPPFPLQLNEDQHHQLLFSPKPQPSSSSSSSLTCPIFFSPTKEQGGCHYR 60

Query: 54  ESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENS 113
           +    +  +E    +    GS DHP      ES S++ GLKL++   K E  ++N SEN 
Sbjct: 61  DLHQAQPQQEAHDKFVFRGGSYDHP----TLESESDN-GLKLTI--WKTEDRNENHSENG 113

Query: 114 SSVKWMSSKMRLMKKMMYSSPDAAAMQK-------LEDHQKQ--PPSSSLEPDNGNNNNN 164
           S VKWMSSKMR+M+KMM S  D    QK         DH++Q  P  +     N +N N+
Sbjct: 114 S-VKWMSSKMRVMQKMMIS--DQTGAQKPSNTALNFGDHKQQSLPSETDYNSINSSNINS 170

Query: 165 TNTIRVCADCNTTKTPLWRSGPRGPK 190
            NTIRVCADCNTTKTPLWRSGPRGPK
Sbjct: 171 NNTIRVCADCNTTKTPLWRSGPRGPK 196

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429550|ref|XP_002279283.1| PREDICTED: putative GATA transcription factor 22 [Vitis vinifera] gi|296081660|emb|CBI20665.3| unnamed protein product [Vitis vinifera]

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/200 (40%), Positives = 108/200 (54%), Gaps = 16/200 (8%)

Query: 1   MTPNY-HLSPVTPFP-LELKED----QLLNLNQPPS--SSSPASCHNFF-EPVQREGGFY 51
           MTP + + S  +PFP LELKED    QLL    PPS  +SS   C +FF    Q + G +
Sbjct: 1   MTPVFLNTSSSSPFPALELKEDHQHFQLLFSTNPPSYQASSSHPCPSFFNSSTQSQRGDH 60

Query: 52  YRESVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSE 111
                     K+ + +     G       + + +  ++       +S  K+E  D+    
Sbjct: 61  SPRDPQQHEDKDDKYISHGGCGESQVFSSSSLLQPMADDNKSSHKLSVFKKEEGDEG--- 117

Query: 112 NSSSVKWMSSKMRLMKKMMYSSPDAAAM-QKLEDHQKQPPSSSLEPDNGNNNNNTNTIRV 170
           N S+ KWMSSKMRLM+KMM S    A + QK+EDHQ+     ++   N +NN +   IRV
Sbjct: 118 NKSTEKWMSSKMRLMRKMMNSDCTTAKIEQKVEDHQQW---DNINEFNSSNNTSNIPIRV 174

Query: 171 CADCNTTKTPLWRSGPRGPK 190
           C+DCNTTKTPLWRSGPRGPK
Sbjct: 175 CSDCNTTKTPLWRSGPRGPK 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398801|gb|ADL36695.1| GATA domain class transcription factor [Malus x domestica]

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 113/234 (48%), Gaps = 53/234 (22%)

Query: 3   PNYH-LSPVTPFPLELKEDQ----------LLNL--NQPPSSSSPASCHNFFEPVQREGG 49
           P YH LSP +PF LEL  D           L NL      SSSS  S   F  P Q +G 
Sbjct: 4   PPYHNLSPPSPFTLELSGDHHGDHDLQYHHLFNLEPQASFSSSSSLSSALFLTPAQVQG- 62

Query: 50  FYYRESVLLRHPKEVRILYSQA-------AGSCDHPGPAVMDESGSESTGLKLSMSSEKE 102
              R     R P + +    +A        GS DH   A+ +E GS  T LKLS+S    
Sbjct: 63  ---RSDDHYREPHQFQFQLLEADHNIVPHGGSHDHDHQAIENEGGS-GTVLKLSISKNGA 118

Query: 103 ERNDQ---NQSENSSSVKWMSSKMRLMKKMMYSSPDAA----------------AMQKLE 143
             N     +   ++SSVKWMSSKMR+M+KM  S+PD                  +  K E
Sbjct: 119 VGNGNPGTDHETSTSSVKWMSSKMRMMRKM--SNPDQTSSSSTSSDDKPISMKLSSHKFE 176

Query: 144 DHQKQPPSSSLEPD-------NGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPK 190
           + + Q PSS L  D       + NN NN   IRVC+DCNTTKTPLWRSGPRGPK
Sbjct: 177 EQKLQHPSSQLGADMISCSNNSSNNMNNVPIIRVCSDCNTTKTPLWRSGPRGPK 230

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550705|ref|XP_003543725.1| PREDICTED: GATA transcription factor 21-like [Glycine max]

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 102/214 (47%), Gaps = 41/214 (19%)

Query: 1   MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPVQREGGFYYRES----V 56
           M P Y  S  +  PL+L EDQ                H FF P+      +   S    +
Sbjct: 1   MIPAYRHSVSSVMPLDLNEDQ---------------NHEFFSPIHHPSSSFSSLSSSYPI 45

Query: 57  LLRHPKEVRILYSQAAGSCDH------PGPAVMDESGSESTGLKLSMSS----EKEERND 106
           L   P + +   S    +  H          ++  SGS    ++ S        KEERN 
Sbjct: 46  LFNPPNQDQEARSYDWETTKHLPSHEEEAEKIIPTSGSWGHSVEESEHKVTVWRKEERN- 104

Query: 107 QNQSENSSSVKWMSSKMRLMKKMMYS------SPDAAAMQKLEDHQKQPPSSSLEPDNGN 160
           +N +E+ S VKWM SKMR+M+KM+ S      + D     K +DH++Q  S     DN +
Sbjct: 105 ENLAEDGS-VKWMPSKMRIMRKMLVSNQTDAYTSDNNTTHKFDDHKQQLSSPLGIDDNSS 163

Query: 161 NN----NNTNTIRVCADCNTTKTPLWRSGPRGPK 190
           NN    +N + +RVC+DC+TTKTPLWRSGPRGPK
Sbjct: 164 NNYSDKSNNSIVRVCSDCHTTKTPLWRSGPRGPK 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564796|ref|XP_003550634.1| PREDICTED: putative GATA transcription factor 22-like [Glycine max]

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/213 (37%), Positives = 108/213 (50%), Gaps = 33/213 (15%)

Query: 1   MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPV-------QREGGFYYR 53
           M P Y  S  +  PL+L EDQ      P    S +       P+        +E   YY 
Sbjct: 1   MIPAYRHSVSSVMPLDLNEDQNHEFFSPTHHPSSSFSSLSSYPILFNPPNQDQEARSYYW 60

Query: 54  E---SVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQS 110
           E     L  H +E   +   ++GS DH        S +ES   K ++  + EERN+  +S
Sbjct: 61  EPTKQYLPSHEEETEKIIP-SSGSWDH--------SVAESEHNKATVWKKAEERNENLES 111

Query: 111 --ENSSSVKWMSSKMRLMKKMM-------YSSPDAAAMQKLEDHQKQPPSSSLEPDNGNN 161
                 S+KWM +KMR+M+KM+       Y++ D     K +D QKQ  SS L  DN ++
Sbjct: 112 VAAEDGSLKWMPAKMRIMRKMLVSDQTDTYTNSDNNTTHKFDD-QKQQLSSPLGTDNSSS 170

Query: 162 NNNTN----TIRVCADCNTTKTPLWRSGPRGPK 190
           NN +N    T+RVC+DC+TTKTPLWRSGPRGPK
Sbjct: 171 NNYSNHSNNTVRVCSDCHTTKTPLWRSGPRGPK 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398795|gb|ADL36692.1| GATA domain class transcription factor [Malus x domestica]

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/228 (37%), Positives = 113/228 (49%), Gaps = 47/228 (20%)

Query: 3   PNYH-LSPVTPFPLELKEDQ------LLNLNQPPSSSSPASCHNFFEPVQREGGFYYRES 55
           P YH LSP +PF LEL  D       L NL    S SS  S   F  P Q +     R  
Sbjct: 4   PPYHNLSPPSPFNLELSGDHDLQYHHLFNLEPQTSFSSSLSSPLFLTPAQVQA----RSD 59

Query: 56  VLLRHPKEVRILYSQA-------AGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQN 108
              R P++ +    +A        GS DH   A+ +E G+  T LKLS+S    + +   
Sbjct: 60  DHYRKPQQFQFQLLEADHNIVPYGGSRDHDHQAIENEGGN-GTVLKLSISKNGADGSGNP 118

Query: 109 QSE---NSSSVKWMSSKMRLMKKMMYSSPDAA----------------AMQKLEDHQKQP 149
            ++   N+SSVKWMSSK+R+M KM  S+PD                  +  K E+ + Q 
Sbjct: 119 STDHEVNTSSVKWMSSKIRMMWKM--SNPDHTSSSSNSSGDKPISMKLSSHKFEEQKPQH 176

Query: 150 PSSSLEPD-------NGNNNNNTNTIRVCADCNTTKTPLWRSGPRGPK 190
           PSS L  +       + NN ++   IRVC+DC+TTKTPLWRSGPRGPK
Sbjct: 177 PSSQLGAEMISCSNNSSNNMSSLPIIRVCSDCSTTKTPLWRSGPRGPK 224

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556282|ref|XP_003546455.1| PREDICTED: putative GATA transcription factor 22-like [Glycine max]

 Score = 86.3 bits (212), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 77/208 (37%), Positives = 114/208 (54%), Gaps = 31/208 (14%)

Query: 1   MTPNYHLSPVTPFPLELKEDQLLNL----NQPPSSSSPASCHNFFEPVQREGGFY--YRE 54
           M P Y  S  +P P++L ED   +L    +Q   SSS  S    F P Q +GG    ++ 
Sbjct: 1   MIPTYRYSVSSPMPIDLNEDHTHHLFSTNHQASCSSSSLSYSILFNPDQDQGGSCSDWKS 60

Query: 55  SVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSS 114
             L    +  +I+ S         G +  DE+ S+   LKL +  +KE++ +  Q E++S
Sbjct: 61  KHLQSDEEAQKIVPS--------SGLSEKDENKSD---LKLRVW-KKEDKCENFQGEDNS 108

Query: 115 SVKWMSSKMRLMKKMMYS----SPDAAAM----QKLEDHQKQPPSSSLEPDNGNNNNNTN 166
           + KWM  KMR+M+++M S    S D   M    QK++  +K  P S L  D+ N N+++N
Sbjct: 109 T-KWMPLKMRMMRRLMVSDQTGSDDTEGMISNSQKIKYEEKNSPLSPLGTDDSNYNSSSN 167

Query: 167 ----TIRVCADCNTTKTPLWRSGPRGPK 190
               T+RVC+DC+TTKTPLWRSGP+GPK
Sbjct: 168 HSNITVRVCSDCHTTKTPLWRSGPKGPK 195

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805325|emb|CAN63090.1| hypothetical protein VITISV_032017 [Vitis vinifera]

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/91 (54%), Positives = 61/91 (67%), Gaps = 7/91 (7%)

Query: 101 KEERNDQNQSENSSSVKWMSSKMRLMKKMMYSSPDAAAM-QKLEDHQKQPPSSSLEPDNG 159
           K+E  D+    N S+ KWMSSKMRLM+KMM S    A + QK+EDHQ+    +       
Sbjct: 15  KKEEGDEG---NKSTEKWMSSKMRLMRKMMNSDCTTAKIEQKVEDHQQWDNINEXNS--- 68

Query: 160 NNNNNTNTIRVCADCNTTKTPLWRSGPRGPK 190
           +NN +   IRVC+DCNTTKTPLWRSGPRGPK
Sbjct: 69  SNNTSNIPIRVCSDCNTTKTPLWRSGPRGPK 99

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554076|ref|XP_003545375.1| PREDICTED: putative GATA transcription factor 22-like [Glycine max]

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/211 (35%), Positives = 105/211 (49%), Gaps = 43/211 (20%)

Query: 1   MTPNYHLSPVTPFPLELKEDQLLNLNQPPSSSSPASCHNFFEPVQRE---GGF---YYRE 54
           MTP Y L+P  P  ++  ++QL N++  P++    +  N F+P Q     GG    Y ++
Sbjct: 1   MTP-YSLNPPGP-SIQAGQNQLFNIS--PNNQDCRTFFNIFDPRQTSIEIGGLRENYRQD 56

Query: 55  SVLLRHPKEVRILYSQAAGSCDHPGPAVMDESGSESTGLKLSMSSEKEERNDQNQSENSS 114
             ++ H        S    S   P   VM +  S +   + ++ SE+E +N+ + S N  
Sbjct: 57  DKMILHDGSSSNCNSSFNIS---PETVVMVDPLSSACDRR-NLPSEEESKNNDHGSGN-- 110

Query: 115 SVKWMSSKMRLMKKMMY------------SSPDAAAMQKLEDH---QKQPPSSSLEPDNG 159
             KWMSSKMRLMKKMM             SSP     Q LE     Q+ P          
Sbjct: 111 --KWMSSKMRLMKKMMRPSISPTTDKAINSSPRFQNHQGLESRRYSQRSP---------- 158

Query: 160 NNNNNTNTIRVCADCNTTKTPLWRSGPRGPK 190
            NNN ++T RVC+DCNT+ TPLWR+GP+GPK
Sbjct: 159 RNNNGSSTPRVCSDCNTSTTPLWRTGPKGPK 189

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2170277	398	GNC "GATA, nitrate-inducible,	0.105	0.057	0.956	2.6e-07
TAIR|locus:2120845	352	CGA1 "cytokinin-responsive gat	0.105	0.065	0.913	3.2e-07
TAIR|locus:2148558	120	GATA23 "GATA transcription fac	0.105	0.191	0.695	8.6e-06
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.100	0.158	0.727	3.9e-05
TAIR|locus:2093678	190	GATA17 "GATA transcription fac	0.100	0.115	0.681	6.6e-05
TAIR|locus:2115195	211	GATA19 "GATA transcription fac	0.100	0.104	0.772	0.00044
TAIR|locus:2077932	295	MNP "MONOPOLE" [Arabidopsis th	0.100	0.074	0.772	0.00098

TAIR|locus:2170277 GNC "GATA, nitrate-inducible, carbon metabolism-involved" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 22/23 (95%), Positives = 23/23 (100%)

Query:   168 IRVCADCNTTKTPLWRSGPRGPK 190
             IRVC+DCNTTKTPLWRSGPRGPK
Sbjct:   229 IRVCSDCNTTKTPLWRSGPRGPK 251

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010255 "glucose mediated signaling pathway" evidence=IMP

GO:0051171 "regulation of nitrogen compound metabolic process" evidence=IEP;IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2120845 CGA1 "cytokinin-responsive gata factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 3.2e-07, P = 3.2e-07
 Identities = 21/23 (91%), Positives = 23/23 (100%)

Query:   168 IRVCADCNTTKTPLWRSGPRGPK 190
             IR+C+DCNTTKTPLWRSGPRGPK
Sbjct:   198 IRICSDCNTTKTPLWRSGPRGPK 220

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2148558 GATA23 "GATA transcription factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 8.6e-06, P = 8.6e-06
 Identities = 16/23 (69%), Positives = 19/23 (82%)

Query:   168 IRVCADCNTTKTPLWRSGPRGPK 190
             IR C++C TTKTP+WR GP GPK
Sbjct:    25 IRCCSECKTTKTPMWRGGPTGPK 47

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0048527 "lateral root development" evidence=IMP

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query:   169 RVCADCNTTKTPLWRSGPRGPK 190
             + CADC T+KTPLWR GP GPK
Sbjct:    36 KTCADCGTSKTPLWRGGPVGPK 57

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2093678 GATA17 "GATA transcription factor 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
 Identities = 15/22 (68%), Positives = 16/22 (72%)

Query:   169 RVCADCNTTKTPLWRSGPRGPK 190
             R C DC T +TPLWR GP GPK
Sbjct:    42 RTCVDCGTIRTPLWRGGPAGPK 63

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2115195 GATA19 "GATA transcription factor 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00044, P = 0.00044
 Identities = 17/22 (77%), Positives = 20/22 (90%)

Query:   169 RVCADCNTTKTPLWRSGPRGPK 190
             R CA+C+TT TPLWR+GPRGPK
Sbjct:    75 RRCANCDTTSTPLWRNGPRGPK 96

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2077932 MNP "MONOPOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 0.00098, P = 0.00098
 Identities = 17/22 (77%), Positives = 20/22 (90%)

Query:   169 RVCADCNTTKTPLWRSGPRGPK 190
             R CA+C+TT TPLWR+GPRGPK
Sbjct:   152 RRCANCDTTSTPLWRNGPRGPK 173


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      218       182   0.00098  109 3  11 22  0.47    32
                                                     31  0.40    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  164 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.57u 0.13s 18.70t   Elapsed:  00:00:01
  Total cpu time:  18.57u 0.13s 18.70t   Elapsed:  00:00:01
  Start:  Sat May 11 09:52:06 2013   End:  Sat May 11 09:52:07 2013

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	3e-07
pfam00320	36	pfam00320, GATA, GATA zinc finger	7e-07
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	2e-04

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 166 NTIRVCADCNTTKTPLWRSGPRGPKV 191
            + R C++C TT+TPLWR GP G K 
Sbjct: 1   GSGRSCSNCGTTETPLWRRGPSGNKT 26

Length = 52

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 44.2 bits (105), Expect = 7e-07
 Identities = 13/20 (65%), Positives = 16/20 (80%)

Query: 171 CADCNTTKTPLWRSGPRGPK 190
           C++C TTKTPLWR GP G +
Sbjct: 1   CSNCGTTKTPLWRRGPDGNR 20

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 170 VCADCNTTKTPLWRSGPRGP 189
            C++C TT TPLWR GP G 
Sbjct: 1   ACSNCGTTTTPLWRRGPSGG 20

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.52
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.51
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.5
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.85
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	97.88
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	87.94
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	83.7

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.52  E-value=3e-15  Score=105.41  Aligned_cols=35  Identities=34%  Similarity=0.601  Sum_probs=33.0

Q ss_pred             ccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          170 VCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       170 ~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      .|++|++++||+||+||.|..+|||||||+|++..
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~   35 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG   35 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC
Confidence            59999999999999999999999999999999864

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.51  E-value=4.7e-15  Score=103.35  Aligned_cols=39  Identities=36%  Similarity=0.570  Sum_probs=35.7

Q ss_pred             CCcccccCCCCCCCCccCCCCCCchhhhhhhhccccccc
Q 027800          167 TIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPMLV  205 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~~  205 (218)
                      ..+.|++|+++.||+||+||.|+++|||||||+|+|...
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~   40 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGG   40 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCC
Confidence            468999999999999999999999999999999998543

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.50  E-value=2e-15  Score=98.21  Aligned_cols=34  Identities=32%  Similarity=0.635  Sum_probs=27.4

Q ss_pred             cccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          171 CADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       171 C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      |++|++++||+||+||.|+.+|||||||+|+|..
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~   34 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYG   34 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhC
Confidence            8999999999999999999999999999999854

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.85  E-value=9.1e-10  Score=88.15  Aligned_cols=37  Identities=43%  Similarity=0.776  Sum_probs=35.2

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ...|.+|+++.||+||++|.|++.+|||||++|++..
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~  235 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGG  235 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcC
Confidence            6899999999999999999999999999999999973

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=97.88  E-value=5.9e-06  Score=80.15  Aligned_cols=38  Identities=29%  Similarity=0.468  Sum_probs=32.1

Q ss_pred             CCCCcccccCCCCCCCCccCCCCC----Cchhhhhhhhcccc
Q 027800          165 TNTIRVCADCNTTKTPLWRSGPRG----PKVTKLILSIEKLP  202 (218)
Q Consensus       165 ~~~~~~C~~Cgtt~TP~WR~GP~G----pktLCNACGLryrK  202 (218)
                      .....+|.+|.++.||+|||+..+    +-.|||||||++.=
T Consensus       155 s~~~~vc~Nc~t~stPlwrR~~~~~s~~~n~lcnaCgl~~kl  196 (498)
T COG5641         155 SNQPHVCSNCKTTSTPLWRRASSESSLPGNNLCNACGLYLKL  196 (498)
T ss_pred             ccccchhccccccCCccccccccccccCCccccccccccccc
Confidence            334459999999999999999994    37999999998864

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=87.94  E-value=0.37  Score=48.17  Aligned_cols=38  Identities=21%  Similarity=0.113  Sum_probs=32.1

Q ss_pred             CcccccCCCCCCCCc--cCCCCCCchhhhhhhhccccccc
Q 027800          168 IRVCADCNTTKTPLW--RSGPRGPKVTKLILSIEKLPMLV  205 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~W--R~GP~GpktLCNACGLryrK~~~  205 (218)
                      .+.|..|+||+.-+|  .-+|.-.+.||-.|.++|+|...
T Consensus       386 g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKygG  425 (693)
T KOG3554|consen  386 GRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYGG  425 (693)
T ss_pred             CCcccccccccccceeccCCCCccchhhHHHHHHHHHhcC
Confidence            679999999999999  44555577999999999999643

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=83.70  E-value=0.56  Score=43.76  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=37.6

Q ss_pred             CCcccccCCCCCCCCccCCCCCCchhhhhhhhccccccceeeee
Q 027800          167 TIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPMLVFFFCV  210 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~~~f~c~  210 (218)
                      ....|++|++.. |+|-.-.-| -.||--|.=.-|.+.+++.++
T Consensus        19 ~Nk~CaDCga~~-P~W~S~nlG-vfiCi~CagvHRsLGvhiS~V   60 (319)
T COG5347          19 SNKKCADCGAPN-PTWASVNLG-VFLCIDCAGVHRSLGVHISKV   60 (319)
T ss_pred             ccCccccCCCCC-CceEecccC-eEEEeecchhhhccccceeee
Confidence            467899999999 999999999 799999999999988887665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	4e-06
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	7e-06
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	1e-05
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	6e-05
3dfx_A	63	Trans-acting T-cell-specific transcription factor	7e-05

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 41.6 bits (98), Expect = 4e-06
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 169 RVCADCNTTKTPLWRSGPRG 188
           R C +C  T TPLWR    G
Sbjct: 5   RECVNCGATATPLWRRDRTG 24

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 41.6 bits (97), Expect = 7e-06
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 162 NNNTNTIRVCADCNTTKTPLWRSGPRG 188
           N   N    C +C T  TPLWR  P G
Sbjct: 3   NGEQNGPTTCTNCFTQTTPLWRRNPEG 29

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 41.4 bits (97), Expect = 1e-05
 Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 159 GNNNNNTNTIRVCADCNTTKTPLWRSGPRGPKV 191
           G++ N  +    C++C+ T+T  WR+      +
Sbjct: 1   GSHMNKKS--FQCSNCSVTETIRWRNIRSKEGI 31

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 38.2 bits (89), Expect = 6e-05
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 169 RVCADCNTTKTPLWRSGPRGPKV 191
             C +C T  TPLWR  P G  +
Sbjct: 2   TTCTNCFTQTTPLWRRNPEGQPL 24

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 38.9 bits (90), Expect = 7e-05
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 162 NNNTNTIRVCADCNTTKTPLWRSGPRG 188
           +        CA+C TT T LWR    G
Sbjct: 1   SAARRAGTSCANCQTTTTTLWRRNANG 27

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.6
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.6
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.59
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.57
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.5
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.34
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.19

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.60  E-value=1e-16  Score=108.01  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=32.5

Q ss_pred             cccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          169 RVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       169 ~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      +.|++|++++||+||+||+|+ +|||||||+|++..
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~   36 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHG   36 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHS
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhC
Confidence            579999999999999999997 99999999998753

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.60  E-value=2.7e-16  Score=113.58  Aligned_cols=39  Identities=26%  Similarity=0.347  Sum_probs=35.3

Q ss_pred             CCCCcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          165 TNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       165 ~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ......|++|+++.||+||+||+|+ +|||||||+|++..
T Consensus         4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~   42 (63)
T 3dfx_A            4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHN   42 (63)
T ss_dssp             CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHS
T ss_pred             CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcC
Confidence            4557889999999999999999997 99999999999854

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.59  E-value=2.3e-16  Score=107.74  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=33.7

Q ss_pred             CCcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          167 TIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       167 ~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ..+.|++|++++||+||+||.|+ +|||||||+|++..
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~   39 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNG   39 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcC
Confidence            46789999999999999999997 99999999998753

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.57  E-value=3.1e-16  Score=114.03  Aligned_cols=39  Identities=28%  Similarity=0.463  Sum_probs=35.4

Q ss_pred             CCCCCcccccCCCCCCCCccCCCCCCchhhhhhhhccccc
Q 027800          164 NTNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPM  203 (218)
Q Consensus       164 ~~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~  203 (218)
                      ..+....|++|++++||+||+||.|+ +|||||||+|++.
T Consensus         5 ~~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~   43 (66)
T 4gat_A            5 EQNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLH   43 (66)
T ss_dssp             CSSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHc
Confidence            34668999999999999999999997 9999999999873

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.50  E-value=3.7e-15  Score=109.81  Aligned_cols=40  Identities=18%  Similarity=0.202  Sum_probs=32.0

Q ss_pred             CCCCcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          165 TNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       165 ~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ......|++|+|++||+||+||.+..+|||||||+|++..
T Consensus         5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~   44 (71)
T 2kae_A            5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN   44 (71)
T ss_dssp             ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH
T ss_pred             CCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC
Confidence            4567899999999999999954444499999999999854

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.34  E-value=3.4e-13  Score=106.25  Aligned_cols=39  Identities=26%  Similarity=0.357  Sum_probs=35.0

Q ss_pred             CCCCcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          165 TNTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       165 ~~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ......|++|+++.||+||+||+| ++|||||||+|++..
T Consensus        56 ~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~   94 (115)
T 4hc9_A           56 RRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHN   94 (115)
T ss_dssp             CCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred             ccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhC
Confidence            345689999999999999999999 899999999998744

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.19  E-value=2.7e-12  Score=101.11  Aligned_cols=35  Identities=29%  Similarity=0.521  Sum_probs=30.6

Q ss_pred             CCCcccccCCCCCCCCccCCCCCCchhhhhhhhccc
Q 027800          166 NTIRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKL  201 (218)
Q Consensus       166 ~~~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryr  201 (218)
                      ...+.|++|+++.||+||+||.| .+|||||||+|+
T Consensus         3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~K   37 (115)
T 4hc9_A            3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHK   37 (115)
T ss_dssp             ---CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHH
T ss_pred             CCCCCCCCCCCccCCcceECCCC-CCcCcchhhhhh
Confidence            35689999999999999999999 699999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	2e-06
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	2e-05
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	6e-05

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (96), Expect = 2e-06
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 169 RVCADCNTTKTPLWRSGPRG 188
           R C +C  T TPLWR    G
Sbjct: 3   RECVNCGATATPLWRRDRTG 22

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.2 bits (91), Expect = 2e-05
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 169 RVCADCNTTKTPLWRSGPRGPKVT 192
            VC++C T+ T LWR  P G  V 
Sbjct: 5   TVCSNCQTSTTTLWRRSPMGDPVC 28

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 37.1 bits (86), Expect = 6e-05
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 170 VCADCNTTKTPLWRSGPRG 188
            C +C T  TPLWR  P G
Sbjct: 2   TCTNCFTQTTPLWRRNPEG 20

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.65
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.62
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.55
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	84.21

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=6.5e-18  Score=111.01  Aligned_cols=35  Identities=29%  Similarity=0.508  Sum_probs=32.3

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPM  203 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~  203 (218)
                      .+.|++|++++||+||+||.| ++|||||||+|+..
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~   36 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMN   36 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHS
T ss_pred             cCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHh
Confidence            478999999999999999999 68999999999864

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.62  E-value=2.1e-17  Score=110.02  Aligned_cols=33  Identities=30%  Similarity=0.555  Sum_probs=30.8

Q ss_pred             ccccCCCCCCCCccCCCCCCchhhhhhhhccccc
Q 027800          170 VCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPM  203 (218)
Q Consensus       170 ~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~  203 (218)
                      .|++|++++||+||+||.| ++|||||||+|++.
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl~~k~~   34 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLH   34 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHHHHHHH
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhHHHHHc
Confidence            6999999999999999999 79999999999764

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=2.4e-16  Score=113.12  Aligned_cols=36  Identities=28%  Similarity=0.461  Sum_probs=32.9

Q ss_pred             CcccccCCCCCCCCccCCCCCCchhhhhhhhcccccc
Q 027800          168 IRVCADCNTTKTPLWRSGPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       168 ~~~C~~Cgtt~TP~WR~GP~GpktLCNACGLryrK~~  204 (218)
                      ...|+||+++.||+||+||.| .+|||||||+|++..
T Consensus         4 g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~~~~~   39 (66)
T d3gata_           4 GTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQ   39 (66)
T ss_dssp             TCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHHHHHC
T ss_pred             CCCCCCCCCCCCcccccCCCC-CcccchhHHHHHHhC
Confidence            467999999999999999999 799999999998743

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.21  E-value=0.14  Score=33.74  Aligned_cols=20  Identities=20%  Similarity=0.247  Sum_probs=17.3

Q ss_pred             CCCCCchhhhhhhhcccccc
Q 027800          185 GPRGPKVTKLILSIEKLPML  204 (218)
Q Consensus       185 GP~GpktLCNACGLryrK~~  204 (218)
                      ||+||+.-|+.||..|--.+
T Consensus         1 g~~gp~~eC~lC~vKYs~~~   20 (48)
T d2yrka1           1 GTDGTKPECTLCGVKYSARL   20 (48)
T ss_dssp             CCCCCCSCCTTTTCCCCSSS
T ss_pred             CCCCCcccCcccceeeeeec
Confidence            89999999999999996543