Citrus Sinensis ID: 027804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQVTSILYQCFPFPHISFGLFVFAMNFLLFKYS
Secondary Structure (PSIPRED)
ccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccEEEHHHHHHHHHHHcccccccEEEHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEccEEEEEEccccccHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHccccccEcHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccEEEEEEccEEEEEEccHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mrrrpgigglqSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHkndirknptfRSQFHEMCAKvgvdplasnkgFWAELLGIGDFYYELGVQIVEICLatrphnggliNLQELCNLLRQRRksnreavseDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQVTSIlyqcfpfphisfgLFVFAMNFLLFKYS
Flexible Loop (DISEMBL)
mrrrpgigglqsaavardQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKsnreavseddclrAISKLkvlgngyevisvgkkklvrsVPTELNKDHNQILELAQVTSILYQCFPFPHISFGLFVFAMNFLLFKYS
Low Complexity Region (SEG)
MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQVTSILYQCFPFPHISFGLFVFAMNFLLFKYS
Disordered region (IsUnstruct)
**************VARDQYRLLGENVAKLRTDLMKEQLATFR******************TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQ**********EDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQVTSILYQCFPFPHISFGLFVFAMNFLLFKY*
Disordered Region (DISOPRED)
*RRRPGIGGLQS********************DLMKEQLATFRSQLEDFARKHK***R*NPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLL***********SEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQVTSILYQCFPFPHISFGLFVFAMNFLLFKYS
Disordered Region (DISEMBL)
***********SAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQR*********EDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQVTSILYQCFPFPHISFGLFVFAMNFLLFKYS
Disordered Region (DISPRO)
****PGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQVTSILYQCFPFPHISFGLFVFAMNFLLFKYS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQVTSILYQCFPFPHISFGLFVFAMNFLLFKYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q5M759	250	Vacuolar protein sorting-	yes	no	0.857	0.748	0.877	1e-96
Q5RJU0	257	Vacuolar-sorting protein	yes	no	0.853	0.723	0.543	3e-54
Q9LIJ4	120	Putative vacuolar protein	no	no	0.536	0.975	0.820	4e-54
Q5RK19	258	Vacuolar-sorting protein	yes	no	0.853	0.720	0.521	3e-52
Q9CZ28	258	Vacuolar-sorting protein	yes	no	0.853	0.720	0.521	3e-52
Q96H20	258	Vacuolar-sorting protein	yes	no	0.853	0.720	0.521	3e-52
Q5U3V9	258	Vacuolar-sorting protein	yes	no	0.853	0.720	0.526	5e-52
Q54RC4	246	Vacuolar-sorting protein	yes	no	0.857	0.760	0.537	2e-48
O94663	252	Vacuolar-sorting protein	yes	no	0.853	0.738	0.350	1e-32
Q12483	233	Vacuolar-sorting protein	yes	no	0.733	0.686	0.352	4e-24

>sp|Q5M759|VP221_ARATH Vacuolar protein sorting-associated protein 22 homolog 1 OS=Arabidopsis thaliana GN=VP22-1 PE=2 SV=2

 Score =  352 bits (902), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 164/187 (87%), Positives = 179/187 (95%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ AA ARDQYRLLGENVAKLRTD+MKEQL+TFRSQLE+FARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           P FR+QFHEMCA +GVDPLASNKGFWAELLGIGDFYYELGVQI+E+C+ TR HNGGLI+L
Sbjct: 61  PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELCN LRQRRK +REAV+EDDCLRAISKLKVLG+G+EVI++GKKKLVRSVPTELNKDHN
Sbjct: 121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180

Query: 181 QILELAQ 187
           QILELAQ
Sbjct: 181 QILELAQ 187

Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5RJU0|SNF8_XENTR Vacuolar-sorting protein SNF8 OS=Xenopus tropicalis GN=snf8 PE=2 SV=1

 Score =  211 bits (537), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 101/186 (54%), Positives = 132/186 (70%)

Query: 2   RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
           RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct: 3   RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLLQMSKQLEMFKTNLEEFASKHKQEIRKNP 62

Query: 62  TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
            FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA + HNGGLI L 
Sbjct: 63  QFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHHNGGLITLA 122

Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
           EL   + + R    + VS+DD +RAI KLKVLGNG+ +I VG   LV+SVP ELN DH  
Sbjct: 123 ELHQHVLKGRGKLAQDVSQDDIIRAIKKLKVLGNGFGIIPVGGSYLVQSVPAELNMDHTV 182

Query: 182 ILELAQ 187
           +L+LA+
Sbjct: 183 VLQLAE 188

Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.

Xenopus tropicalis (taxid: 8364)

>sp|Q9LIJ4|VP222_ARATH Putative vacuolar protein sorting-associated protein 22 homolog 2 OS=Arabidopsis thaliana GN=VP22-2 PE=5 SV=1

 Score =  211 bits (536), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 96/117 (82%), Positives = 110/117 (94%)

Query: 70  MCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQ 129
           MCA +GVDPLASNKGFWAELLGIGDFYYE+GVQI+E+C+ TR HNGGLI+LQELCN LRQ
Sbjct: 1   MCANIGVDPLASNKGFWAELLGIGDFYYEIGVQIIEVCMLTRSHNGGLISLQELCNHLRQ 60

Query: 130 RRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELA 186
           RRK++REAV+EDDCLRAISKLK+LG+ +EVI++GKKK VRSVPTELNKDHN ILELA
Sbjct: 61  RRKTDREAVTEDDCLRAISKLKLLGSRFEVITIGKKKFVRSVPTELNKDHNHILELA 117

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RK19|SNF8_RAT Vacuolar-sorting protein SNF8 OS=Rattus norvegicus GN=Snf8 PE=1 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 130/186 (69%)

Query: 2   RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
           RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct: 3   RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62

Query: 62  TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
            FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct: 63  EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122

Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
           EL   + + R    + VS+DD +RAI KLK LG G+ +I VG   L++SVP ELN DH  
Sbjct: 123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182

Query: 182 ILELAQ 187
           +L+LA+
Sbjct: 183 VLQLAE 188

Required for degradation of both endocytosed EGF and EGFR, but not for the EGFR ligand-mediated internalization (By similarity). Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. The ESCRT-II complex may also play a role in transcription regulation by participating in derepression of transcription by RNA polymerase II, possibly via its interaction with ELL.

Rattus norvegicus (taxid: 10116)

>sp|Q9CZ28|SNF8_MOUSE Vacuolar-sorting protein SNF8 OS=Mus musculus GN=Snf8 PE=2 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 130/186 (69%)

Query: 2   RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
           RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct: 3   RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62

Query: 62  TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
            FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct: 63  EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122

Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
           EL   + + R    + VS+DD +RAI KLK LG G+ +I VG   L++SVP ELN DH  
Sbjct: 123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182

Query: 182 ILELAQ 187
           +L+LA+
Sbjct: 183 VLQLAE 188

Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. The ESCRT-II complex may also play a role in transcription regulation by participating in derepression of transcription by RNA polymerase II, possibly via its interaction with ELL. Required for degradation of both endocytosed EGF and EGFR, but not for the EGFR ligand-mediated internalization.

Mus musculus (taxid: 10090)

>sp|Q96H20|SNF8_HUMAN Vacuolar-sorting protein SNF8 OS=Homo sapiens GN=SNF8 PE=1 SV=1

 Score =  204 bits (520), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 130/186 (69%)

Query: 2   RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
           RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct: 3   RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62

Query: 62  TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
            FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct: 63  EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122

Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
           EL   + + R    + VS+DD +RAI KLK LG G+ +I VG   L++SVP ELN DH  
Sbjct: 123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182

Query: 182 ILELAQ 187
           +L+LA+
Sbjct: 183 VLQLAE 188

Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. The ESCRT-II complex may also play a role in transcription regulation by participating in derepression of transcription by RNA polymerase II, possibly via its interaction with ELL. Required for degradation of both endocytosed EGF and EGFR, but not for the EGFR ligand-mediated internalization. It is also required for the degradation of CXCR4.

Homo sapiens (taxid: 9606)

>sp|Q5U3V9|SNF8_DANRE Vacuolar-sorting protein SNF8 OS=Danio rerio GN=snf8 PE=2 SV=2

 Score =  204 bits (518), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 98/186 (52%), Positives = 131/186 (70%)

Query: 2   RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
           RR  G G +    +A  +Y+  G  +A+ +   M +QL TF++ LE+FA KHK +IRK+ 
Sbjct: 3   RRGVGAGAIAKKKLAEAKYKERGSVLAEDQIAQMSKQLDTFKTHLEEFASKHKQEIRKSS 62

Query: 62  TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
            FR QF EMCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L 
Sbjct: 63  QFRVQFQEMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLD 122

Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
           EL + + + R    + VS+DD +RAI KLK +GNG+ +I VG   LV+SVP ELN DH  
Sbjct: 123 ELHHRVLKGRGKFAQDVSQDDLVRAIKKLKAMGNGFGMIPVGGTYLVQSVPAELNMDHTV 182

Query: 182 ILELAQ 187
           +L+LA+
Sbjct: 183 VLQLAE 188

Component of the ESCRT-II complex, which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.

Danio rerio (taxid: 7955)

>sp|Q54RC4|SNF8_DICDI Vacuolar-sorting protein SNF8 OS=Dictyostelium discoideum GN=snf8 PE=3 SV=1

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/188 (53%), Positives = 124/188 (65%), Gaps = 1/188 (0%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRR  GI   Q     + Q + + E +     + +KEQL  F+  LE FA KHK DI KN
Sbjct: 1   MRRGIGIQAAQKQTQTQKQLQNVSEQLNTENINKIKEQLLVFKENLEIFATKHKKDIIKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           P FR  F +MC  +GVDPLASNKGFW ++LG+GDFYY LGVQI+EICL  R  NGGL+ +
Sbjct: 61  PEFRKYFQDMCNMIGVDPLASNKGFWCQVLGVGDFYYTLGVQIIEICLKYRSSNGGLMEM 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISV-GKKKLVRSVPTELNKDH 179
             L   LR+ R  N + +S DD   +ISKLKVLGNG+ +I V G KKLV+SVP ELNKDH
Sbjct: 121 DTLAEHLRKLRGKNSQEISCDDIECSISKLKVLGNGFNIIKVSGGKKLVQSVPCELNKDH 180

Query: 180 NQILELAQ 187
             I+ LAQ
Sbjct: 181 TDIIILAQ 188

Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation.

Dictyostelium discoideum (taxid: 44689)

>sp|O94663|SNF8_SCHPO Vacuolar-sorting protein dot2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dot2 PE=3 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 119/191 (62%), Gaps = 5/191 (2%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MR+R GIG L      + QY  +G  + + ++D +  QL+TF+  L+ FAR+H  +I++N
Sbjct: 1   MRKRIGIGALNDDEYLK-QYEEVGNELIEQQSDEIASQLSTFQEALKTFAREHATEIKQN 59

Query: 61  PTFRSQFHEMCAKVGVDPL--ASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLI 118
             FR+ F ++  K+G+DP    S++  WA  +G+ +FYY++ V+++E+C AT+  NGGL+
Sbjct: 60  SQFRNTFVKLALKIGLDPFVSGSDESAWAA-VGMNEFYYQVAVRVIEVCYATQMENGGLL 118

Query: 119 NLQELCNLLRQRRKS-NREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNK 177
           ++ ++C  L +  ++   E + E D +RA+  L  LG G+ +  +  K+ +RS+P ELN 
Sbjct: 119 SVSQVCRFLNEENEAFGHEWLRETDVVRAVDSLAPLGPGFVLEKIAGKQYIRSLPLELNT 178

Query: 178 DHNQILELAQV 188
           D N +LE  ++
Sbjct: 179 DQNVVLEAVEI 189

Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex. Negatively regulates meiotic spindle pole body maturation via indirect regulation of the pcp1 gene. Required for efficient entry into pre-meiotic S phase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12483|SNF8_YEAST Vacuolar-sorting protein SNF8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF8 PE=1 SV=1

 Score =  111 bits (277), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 13/173 (7%)

Query: 19  QYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78
           +Y  + + + + ++  +++QL  F+ +L +FA+KH ++++ +P FRS+F  MC+ +G+DP
Sbjct: 16  KYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDP 75

Query: 79  LA---SNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNR 135
           L+    +K     L  + DFYYE+ ++++EIC  T+  NGG+I+ QEL  +    RK N 
Sbjct: 76  LSLFDRDK----HLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKV--HFRKLN- 128

Query: 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQV 188
             V  DD  ++I  LK L   +E+  +  KK +RSVP EL  D  +ILE+  +
Sbjct: 129 --VGLDDLEKSIDMLKSL-ECFEIFQIRGKKFLRSVPNELTSDQTKILEICSI 178

Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The MVB pathway mediates delivery of transmembrane proteins into the lumen of the lysosome for degradation. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
224126417	249	predicted protein [Populus trichocarpa]	0.862	0.755	0.936	1e-100
255563947	250	Vacuolar sorting protein SNF8, putative	0.862	0.752	0.930	1e-100
449470437	250	PREDICTED: vacuolar protein sorting-asso	0.862	0.752	0.888	2e-96
357459547	251	Vacuolar protein sorting-associated prot	0.857	0.745	0.909	4e-96
356527034	250	PREDICTED: vacuolar protein sorting-asso	0.862	0.752	0.893	1e-95
217074064	251	unknown [Medicago truncatula] gi|3884922	0.857	0.745	0.903	1e-95
356567363	250	PREDICTED: vacuolar protein sorting-asso	0.862	0.752	0.888	4e-95
225461026	252	PREDICTED: vacuolar protein sorting-asso	0.862	0.746	0.904	5e-95
42567176	250	ESCRT-II complex subunit VPS22 [Arabidop	0.857	0.748	0.877	8e-95
297799286	250	hypothetical protein ARALYDRAFT_913844 [	0.857	0.748	0.877	8e-95

>gi|224126417|ref|XP_002319833.1| predicted protein [Populus trichocarpa] gi|222858209|gb|EEE95756.1| predicted protein [Populus trichocarpa]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/188 (93%), Positives = 185/188 (98%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ+AA ARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQTAAAARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           PTFR+QFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL
Sbjct: 61  PTFRTQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELC LLRQ+RKS+REAVSEDDCLRAISKLK+LG+G+EVISVGK+KLVRSVPTELNKDHN
Sbjct: 121 QELCALLRQKRKSDREAVSEDDCLRAISKLKILGSGFEVISVGKRKLVRSVPTELNKDHN 180

Query: 181 QILELAQV 188
           +ILELAQ 
Sbjct: 181 EILELAQA 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563947|ref|XP_002522973.1| Vacuolar sorting protein SNF8, putative [Ricinus communis] gi|223537785|gb|EEF39403.1| Vacuolar sorting protein SNF8, putative [Ricinus communis]

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/188 (93%), Positives = 184/188 (97%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ+AA ARDQYRLLGENVAKLRTDLMKEQL+TFRSQLE+FARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQTAAAARDQYRLLGENVAKLRTDLMKEQLSTFRSQLEEFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           PTFR+QFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL
Sbjct: 61  PTFRAQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELC LLRQ+RKS+R AVSEDDCLRAISKLK+LGNG+EVISVGKKKLVRSVPTELNKDHN
Sbjct: 121 QELCTLLRQKRKSDRGAVSEDDCLRAISKLKILGNGFEVISVGKKKLVRSVPTELNKDHN 180

Query: 181 QILELAQV 188
           +ILELAQ 
Sbjct: 181 EILELAQA 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470437|ref|XP_004152923.1| PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1-like [Cucumis sativus] gi|449515265|ref|XP_004164670.1| PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1-like [Cucumis sativus]

 Score =  357 bits (915), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/188 (88%), Positives = 180/188 (95%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ+AA ARDQYR LGENVAKLR D+MKEQL+TFRSQLEDFARKHK DI KN
Sbjct: 1   MRRRPGIGGLQTAAAARDQYRQLGENVAKLRADMMKEQLSTFRSQLEDFARKHKKDISKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           P FRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYE+GVQIV+ICL+TRPHNGGLI+L
Sbjct: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYEIGVQIVDICLSTRPHNGGLISL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELC LLRQRRKS+REAVSEDDCLRAISKLK+LG+G+EVI+VGKKKLVRSVPTELNKDHN
Sbjct: 121 QELCTLLRQRRKSDREAVSEDDCLRAISKLKILGSGFEVITVGKKKLVRSVPTELNKDHN 180

Query: 181 QILELAQV 188
           +ILELAQ 
Sbjct: 181 EILELAQA 188

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459547|ref|XP_003600054.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|355489102|gb|AES70305.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]

 Score =  356 bits (913), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 170/187 (90%), Positives = 180/187 (96%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ+AA ARDQY+ LGENVAK+RTD+MKEQL+TFRSQLEDFARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQTAAAARDQYKKLGENVAKIRTDMMKEQLSTFRSQLEDFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           P FRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIV+ICLATRP NGGLINL
Sbjct: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPLNGGLINL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELC LLRQRRKS+R  VSEDDCLRAISKLKVLG+G+EVISVGKKKLVRSVPTELNKDHN
Sbjct: 121 QELCQLLRQRRKSDRGVVSEDDCLRAISKLKVLGSGFEVISVGKKKLVRSVPTELNKDHN 180

Query: 181 QILELAQ 187
           +ILELAQ
Sbjct: 181 EILELAQ 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527034|ref|XP_003532119.1| PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1-like [Glycine max]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 168/188 (89%), Positives = 181/188 (96%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ+ A ARDQ+RLLGENVAK+RTDLMKEQLATFRSQLEDFARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQTHAAARDQFRLLGENVAKIRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           P+FRSQFHEMCAKVGVDPLASNKGFW+ELLG+GDFYYELGVQIV+ICLATR HNGGLI+L
Sbjct: 61  PSFRSQFHEMCAKVGVDPLASNKGFWSELLGLGDFYYELGVQIVDICLATRAHNGGLIDL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
            ELC+LLRQRRKS+RE VSEDDCLRAI KLKVLG+G+EVISVGKKKLVRSVPTELNKDHN
Sbjct: 121 HELCSLLRQRRKSDREVVSEDDCLRAIKKLKVLGSGFEVISVGKKKLVRSVPTELNKDHN 180

Query: 181 QILELAQV 188
           +ILELAQ 
Sbjct: 181 EILELAQA 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074064|gb|ACJ85392.1| unknown [Medicago truncatula] gi|388492282|gb|AFK34207.1| unknown [Medicago truncatula]

 Score =  354 bits (908), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 169/187 (90%), Positives = 179/187 (95%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ+AA ARDQY+ LGENVAK RTD+M+EQL+TFRSQLEDFARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQTAAAARDQYKKLGENVAKTRTDMMREQLSTFRSQLEDFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           P FRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIV+ICLATRP NGGLINL
Sbjct: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRPLNGGLINL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELC LLRQRRKS+R  VSEDDCLRAISKLKVLG+G+EVISVGKKKLVRSVPTELNKDHN
Sbjct: 121 QELCQLLRQRRKSDRGVVSEDDCLRAISKLKVLGSGFEVISVGKKKLVRSVPTELNKDHN 180

Query: 181 QILELAQ 187
           +ILELAQ
Sbjct: 181 EILELAQ 187

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567363|ref|XP_003551890.1| PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1-like [Glycine max]

 Score =  353 bits (905), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 167/188 (88%), Positives = 180/188 (95%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ+ A ARDQ+RLLGENVAK+RTDLMKEQLATFRSQLEDFARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQTHAAARDQFRLLGENVAKIRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           P FRSQFHEMCAKVGVDPLASNKGFW+ELLG+GDFYYELGVQIV+ICLATR HNGGLI+L
Sbjct: 61  PAFRSQFHEMCAKVGVDPLASNKGFWSELLGLGDFYYELGVQIVDICLATRVHNGGLIDL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELC+LLR RRK++RE VSEDDCLRAI KLKVLG+G+EVISVGKKKLVRSVPTELNKDHN
Sbjct: 121 QELCHLLRHRRKTDREVVSEDDCLRAIKKLKVLGSGFEVISVGKKKLVRSVPTELNKDHN 180

Query: 181 QILELAQV 188
           +ILELAQ 
Sbjct: 181 EILELAQA 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461026|ref|XP_002281130.1| PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Vitis vinifera] gi|297737408|emb|CBI26609.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (904), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 170/188 (90%), Positives = 177/188 (94%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ+AA  RDQYRLLGENVAK+RTDLMKEQL TFRSQLEDFARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQTAAATRDQYRLLGENVAKIRTDLMKEQLTTFRSQLEDFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           P FRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIV+ICLATR HNGGLI+L
Sbjct: 61  PAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVDICLATRVHNGGLIDL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELCNLL QRRKS   AVSEDDCLRAISKLKVLG+G+EVISVGK+KLVRSVPTELNKDHN
Sbjct: 121 QELCNLLCQRRKSAHGAVSEDDCLRAISKLKVLGSGFEVISVGKRKLVRSVPTELNKDHN 180

Query: 181 QILELAQV 188
            ILELAQ 
Sbjct: 181 AILELAQA 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567176|ref|NP_194434.2| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|186514003|ref|NP_001119065.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|186514006|ref|NP_001119066.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|186514008|ref|NP_001119067.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|332278132|sp|Q5M759.2|VP221_ARATH RecName: Full=Vacuolar protein sorting-associated protein 22 homolog 1; Short=AtVPS22-1; AltName: Full=ESCRT-II complex subunit VPS22 homolog 1 gi|332659887|gb|AEE85287.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|332659888|gb|AEE85288.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|332659889|gb|AEE85289.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|332659890|gb|AEE85290.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana]

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 164/187 (87%), Positives = 179/187 (95%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ AA ARDQYRLLGENVAKLRTD+MKEQL+TFRSQLE+FARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           P FR+QFHEMCA +GVDPLASNKGFWAELLGIGDFYYELGVQI+E+C+ TR HNGGLI+L
Sbjct: 61  PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELCN LRQRRK +REAV+EDDCLRAISKLKVLG+G+EVI++GKKKLVRSVPTELNKDHN
Sbjct: 121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180

Query: 181 QILELAQ 187
           QILELAQ
Sbjct: 181 QILELAQ 187

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799286|ref|XP_002867527.1| hypothetical protein ARALYDRAFT_913844 [Arabidopsis lyrata subsp. lyrata] gi|297313363|gb|EFH43786.1| hypothetical protein ARALYDRAFT_913844 [Arabidopsis lyrata subsp. lyrata]

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 164/187 (87%), Positives = 179/187 (95%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ AA ARDQYRLLGENVAKLRTD+MKEQLATFRSQLE+FARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLATFRSQLEEFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           P FR+QFHEMC+ +GVDPLASNKGFWAELLGIGDFYYELGVQI+E+C+ TR HNGGLI+L
Sbjct: 61  PAFRAQFHEMCSNIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELCN LRQRRK +REAV+EDDCLRAISKLKVLG+G+EVI++GKKKLVRSVPTELNKDHN
Sbjct: 121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180

Query: 181 QILELAQ 187
           QILELAQ
Sbjct: 181 QILELAQ 187

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2116357	250	VPS22 "AT4G27040" [Arabidopsis	0.857	0.748	0.877	1.4e-87
UNIPROTKB|E1BZH7	258	SNF8 "Uncharacterized protein"	0.848	0.717	0.545	4.1e-49
UNIPROTKB|Q08DR7	258	SNF8 "Uncharacterized protein"	0.853	0.720	0.521	2.3e-48
UNIPROTKB|I3L6X7	258	SNF8 "Uncharacterized protein"	0.853	0.720	0.521	2.3e-48
UNIPROTKB|E2RTF6	258	SNF8 "Uncharacterized protein"	0.853	0.720	0.521	3.7e-48
UNIPROTKB|Q96H20	258	SNF8 "Vacuolar-sorting protein	0.853	0.720	0.521	3.7e-48
MGI|MGI:1343161	258	Snf8 "SNF8, ESCRT-II complex s	0.853	0.720	0.521	3.7e-48
RGD|1310144	258	Snf8 "SNF8, ESCRT-II complex s	0.853	0.720	0.521	3.7e-48
ZFIN|ZDB-GENE-041114-117	258	snf8 "SNF8, ESCRT-II complex s	0.853	0.720	0.526	6e-48
DICTYBASE|DDB_G0283203	246	vps22 "EAP30 family protein" [	0.857	0.760	0.537	6.9e-47

TAIR|locus:2116357 VPS22 "AT4G27040" [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 164/187 (87%), Positives = 179/187 (95%)

Query:     1 MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
             MRRRPGIGGLQ AA ARDQYRLLGENVAKLRTD+MKEQL+TFRSQLE+FARKHKNDIRKN
Sbjct:     1 MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60

Query:    61 PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
             P FR+QFHEMCA +GVDPLASNKGFWAELLGIGDFYYELGVQI+E+C+ TR HNGGLI+L
Sbjct:    61 PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120

Query:   121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
             QELCN LRQRRK +REAV+EDDCLRAISKLKVLG+G+EVI++GKKKLVRSVPTELNKDHN
Sbjct:   121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180

Query:   181 QILELAQ 187
             QILELAQ
Sbjct:   181 QILELAQ 187

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0000814 "ESCRT II complex" evidence=ISS

UNIPROTKB|E1BZH7 SNF8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 102/187 (54%), Positives = 135/187 (72%)

Query:     2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
             RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct:     3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62

Query:    62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
              FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct:    63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122

Query:   122 ELCN-LLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
             EL   +L+ R K  +E VS+DD LRAI KLKVLG+G+ +I VG   L++SVP ELN DH 
Sbjct:   123 ELHQQVLKGRGKFAQE-VSQDDLLRAIKKLKVLGSGFGIIPVGGTYLIQSVPAELNMDHT 181

Query:   181 QILELAQ 187
              +L+LA+
Sbjct:   182 VVLQLAE 188

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

UNIPROTKB|Q08DR7 SNF8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 97/186 (52%), Positives = 130/186 (69%)

Query:     2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
             RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct:     3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62

Query:    62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
              FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct:    63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122

Query:   122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
             EL   + + R    + VS+DD +RAI KLK LG G+ +I VG   L++SVP ELN DH  
Sbjct:   123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFSIIPVGGTYLIQSVPAELNMDHTV 182

Query:   182 ILELAQ 187
             +L+LA+
Sbjct:   183 VLQLAE 188

GO:0008134 "transcription factor binding" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

UNIPROTKB|I3L6X7 SNF8 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 97/186 (52%), Positives = 130/186 (69%)

Query:     2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
             RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct:     3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62

Query:    62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
              FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct:    63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122

Query:   122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
             EL   + + R    + VS+DD +RAI KLK LG G+ +I VG   L++SVP ELN DH  
Sbjct:   123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFSIIPVGGTYLIQSVPAELNMDHTV 182

Query:   182 ILELAQ 187
             +L+LA+
Sbjct:   183 VLQLAE 188

GO:0008134 "transcription factor binding" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

UNIPROTKB|E2RTF6 SNF8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 97/186 (52%), Positives = 130/186 (69%)

Query:     2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
             RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct:     3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62

Query:    62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
              FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct:    63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122

Query:   122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
             EL   + + R    + VS+DD +RAI KLK LG G+ +I VG   L++SVP ELN DH  
Sbjct:   123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182

Query:   182 ILELAQ 187
             +L+LA+
Sbjct:   183 VLQLAE 188

GO:0008134 "transcription factor binding" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

UNIPROTKB|Q96H20 SNF8 "Vacuolar-sorting protein SNF8" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 97/186 (52%), Positives = 130/186 (69%)

Query:     2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
             RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct:     3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62

Query:    62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
              FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct:    63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122

Query:   122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
             EL   + + R    + VS+DD +RAI KLK LG G+ +I VG   L++SVP ELN DH  
Sbjct:   123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182

Query:   182 ILELAQ 187
             +L+LA+
Sbjct:   183 VLQLAE 188

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0016197 "endosomal transport" evidence=TAS

MGI|MGI:1343161 Snf8 "SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 97/186 (52%), Positives = 130/186 (69%)

Query:     2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
             RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct:     3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62

Query:    62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
              FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct:    63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122

Query:   122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
             EL   + + R    + VS+DD +RAI KLK LG G+ +I VG   L++SVP ELN DH  
Sbjct:   123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182

Query:   182 ILELAQ 187
             +L+LA+
Sbjct:   183 VLQLAE 188

GO:0005634 "nucleus" evidence=IEA

GO:0005667 "transcription factor complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008134 "transcription factor binding" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1310144 Snf8 "SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 97/186 (52%), Positives = 130/186 (69%)

Query:     2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
             RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct:     3 RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62

Query:    62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
              FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct:    63 EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122

Query:   122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
             EL   + + R    + VS+DD +RAI KLK LG G+ +I VG   L++SVP ELN DH  
Sbjct:   123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182

Query:   182 ILELAQ 187
             +L+LA+
Sbjct:   183 VLQLAE 188

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005667 "transcription factor complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0008134 "transcription factor binding" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

ZFIN|ZDB-GENE-041114-117 snf8 "SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 98/186 (52%), Positives = 131/186 (70%)

Query:     2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
             RR  G G +    +A  +Y+  G  +A+ +   M +QL TF++ LE+FA KHK +IRK+ 
Sbjct:     3 RRGVGAGAIAKKKLAEAKYKERGSVLAEDQIAQMSKQLDTFKTHLEEFASKHKQEIRKSS 62

Query:    62 TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
              FR QF EMCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L 
Sbjct:    63 QFRVQFQEMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLD 122

Query:   122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
             EL + + + R    + VS+DD +RAI KLK +GNG+ +I VG   LV+SVP ELN DH  
Sbjct:   123 ELHHRVLKGRGKFAQDVSQDDLVRAIKKLKAMGNGFGMIPVGGTYLVQSVPAELNMDHTV 182

Query:   182 ILELAQ 187
             +L+LA+
Sbjct:   183 VLQLAE 188

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0283203 vps22 "EAP30 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 101/188 (53%), Positives = 124/188 (65%)

Query:     1 MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
             MRR  GI   Q     + Q + + E +     + +KEQL  F+  LE FA KHK DI KN
Sbjct:     1 MRRGIGIQAAQKQTQTQKQLQNVSEQLNTENINKIKEQLLVFKENLEIFATKHKKDIIKN 60

Query:    61 PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
             P FR  F +MC  +GVDPLASNKGFW ++LG+GDFYY LGVQI+EICL  R  NGGL+ +
Sbjct:    61 PEFRKYFQDMCNMIGVDPLASNKGFWCQVLGVGDFYYTLGVQIIEICLKYRSSNGGLMEM 120

Query:   121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISV-GKKKLVRSVPTELNKDH 179
               L   LR+ R  N + +S DD   +ISKLKVLGNG+ +I V G KKLV+SVP ELNKDH
Sbjct:   121 DTLAEHLRKLRGKNSQEISCDDIECSISKLKVLGNGFNIIKVSGGKKLVQSVPCELNKDH 180

Query:   180 NQILELAQ 187
               I+ LAQ
Sbjct:   181 TDIIILAQ 188

GO:0000814 "ESCRT II complex" evidence=ISS

GO:0006605 "protein targeting" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CZ28	SNF8_MOUSE	No assigned EC number	0.5215	0.8532	0.7209	yes	no
Q5RJU0	SNF8_XENTR	No assigned EC number	0.5430	0.8532	0.7237	yes	no
Q5RK19	SNF8_RAT	No assigned EC number	0.5215	0.8532	0.7209	yes	no
Q96H20	SNF8_HUMAN	No assigned EC number	0.5215	0.8532	0.7209	yes	no
Q5U3V9	SNF8_DANRE	No assigned EC number	0.5268	0.8532	0.7209	yes	no
Q54RC4	SNF8_DICDI	No assigned EC number	0.5372	0.8577	0.7601	yes	no
Q5M759	VP221_ARATH	No assigned EC number	0.8770	0.8577	0.748	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
pfam04157	219	pfam04157, EAP30, EAP30/Vps36 family	6e-56

>gnl|CDD|217934 pfam04157, EAP30, EAP30/Vps36 family

 Score =  176 bits (449), Expect = 6e-56
 Identities = 89/187 (47%), Positives = 124/187 (66%), Gaps = 9/187 (4%)

Query: 6   GIGGLQSAAVARDQYRLLGENVAKLRTDL--MKEQLATFRSQLEDFARKHKNDIRKNPTF 63
           GI G++ +   + +Y  LG  +A    DL  + +Q   F   LE FA+KHK++I+ NP F
Sbjct: 2   GIAGIERSREEQRKYNDLGLQLA--FEDLEALMKQAKDFVELLESFAKKHKSEIKANPEF 59

Query: 64  RSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQEL 123
           R+QF  MCA +GVDPLAS KG  + L G+GDFYYEL VQIVEICLAT   NGG+I+LQ+L
Sbjct: 60  RAQFQSMCASLGVDPLASKKG--SVLGGVGDFYYELAVQIVEICLATLKENGGIISLQDL 117

Query: 124 CNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK-KKLVRSVP-TELNKDHNQ 181
             L   R +   E VS +D L+A  KL+ LG G++++ +G    +V+SVP +EL++D  +
Sbjct: 118 YALY-NRARGGTELVSPEDLLKACKKLEKLGLGFKLVKIGSGVLVVQSVPKSELSEDQTK 176

Query: 182 ILELAQV 188
           ILELA+ 
Sbjct: 177 ILELAEE 183

This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. Length = 219

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG3341	249	consensus RNA polymerase II transcription factor c	100.0
PF04157	223	EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP	100.0
KOG2760	432	consensus Vacuolar sorting protein VPS36 [Intracel	99.88
cd08767	126	Cdt1_c The C-terminal fold of replication licensin	92.17
TIGR02147	271	Fsuc_second hypothetical protein, TIGR02147. This	90.79
PF05158	327	RNA_pol_Rpc34: RNA polymerase Rpc34 subunit; Inter	89.26
PF13382	171	Adenine_deam_C: Adenine deaminase C-terminal domai	85.71
PLN02180	639	gamma-glutamyl transpeptidase 4	85.13
PLN02198	573	glutathione gamma-glutamylcysteinyltransferase	84.79
PF08784	102	RPA_C: Replication protein A C terminal; InterPro:	83.5
cd05029	88	S-100A6 S-100A6: S-100A6 domain found in proteins	83.04
TIGR00066	516	g_glut_trans gamma-glutamyltranspeptidase. Also ca	82.33
PF01019	510	G_glu_transpept: Gamma-glutamyltranspeptidase; Int	80.46
COG0055	468	AtpD F0F1-type ATP synthase, beta subunit [Energy	80.46

>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription]

Probab=100.00  E-value=7.4e-75  Score=499.71  Aligned_cols=190  Identities=64%  Similarity=1.055  Sum_probs=187.1

Q ss_pred             CCCCcchhhhhccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCC
Q 027804            1 MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA   80 (218)
Q Consensus         1 MrR~vGi~ai~~~~~~~~~y~~~g~~l~~~~~~~L~~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLa   80 (218)
                      ||||+|++||++++ ...+|++.|++++++|+.||++||++||++|++||++|+.||++||+||++|+.||++||||||+
T Consensus         1 ~rrrvG~gAi~~~k-~~~ky~~~g~~l~e~Ql~q~~~Ql~~f~~~LeeFA~kH~~ei~knsqFR~~Fq~Mca~IGvDPla   79 (249)
T KOG3341|consen    1 MRRRVGLGAIQKKK-AAKKYKEVGTELAEQQLVQMSKQLEVFQEALEEFARKHKTEIRKNSQFRNQFQEMCASIGVDPLA   79 (249)
T ss_pred             CccchhhhHHhhHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCCccc
Confidence            89999999999987 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCccchHHHHHHHHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCceEEE
Q 027804           81 SNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVI  160 (218)
Q Consensus        81 s~k~~ws~~lG~gdFyyeLaVqIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~Gf~vi  160 (218)
                      |+|++|++++|+|||||||||||||||++|++.|||+|+++||++++.+.|+...+.||+||++|||++|++||+||+|+
T Consensus        80 s~kgfw~~~lgvgdFYYelgVqviEvC~at~~~nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~kLk~LG~gFev~  159 (249)
T KOG3341|consen   80 SGKGFWAELLGVGDFYYELGVQVIEVCLATKHTNGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAIDKLKVLGSGFEVI  159 (249)
T ss_pred             cCcchHHHHhhhHHHHHHHhhHHHHHHHHhhcccCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHHHhhccCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             EECCEEEEEecCCCcchhHHHHHHHHhhccc
Q 027804          161 SVGKKKLVRSVPTELNKDHNQILELAQVTSI  191 (218)
Q Consensus       161 ~ig~k~~vrSvP~ELs~Dq~~vLe~a~~~~~  191 (218)
                      +||||+||||||.|||+||+.|||+|+..|+
T Consensus       160 ~iggK~~vrSVP~ELn~Dht~ILela~~~gy  190 (249)
T KOG3341|consen  160 KIGGKKLVRSVPTELNMDHTVILELAEILGY  190 (249)
T ss_pred             EecCEEeeecCcchhcccHHHHHHHHHhcCc
Confidence            9999999999999999999999999999887

>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex

Probab=100.00  E-value=5.8e-55  Score=377.16  Aligned_cols=183  Identities=50%  Similarity=0.817  Sum_probs=153.0

Q ss_pred             cchhhhhccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCCCC
Q 027804            5 PGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKG   84 (218)
Q Consensus         5 vGi~ai~~~~~~~~~y~~~g~~l~~~~~~~L~~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~k~   84 (218)
                      +||+||+++.+++++|++.+.+.+.+++++|.+|+++|++.+++||++|+++|++||+||++|++||++|||||+++++ 
T Consensus         1 ~GI~~l~~~~~~~~~~~~~~~~~a~~dl~~L~~qa~~~~~~l~~fa~k~~~~i~~~~~~r~~f~~~~~~lGvdp~~s~~-   79 (223)
T PF04157_consen    1 VGIAGLQRRQEQKRQYNELGMQLAFQDLEALMSQAKDFVELLENFARKHKSEIKSDPEFRSQFQSMCASLGVDPLASSK-   79 (223)
T ss_dssp             --------------------TCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCSHHHHHHHHHHHHHHT--CHCCTT-
T ss_pred             CchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHHHHcCCCcccchh-
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             cccccc-CccchHHHHHHHHHHHhhhccccCCCcccHHHHHHHHHhhc-CCCCCCCCHHHHHHHHhhccccCCceEEEEE
Q 027804           85 FWAELL-GIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRR-KSNREAVSEDDCLRAISKLKVLGNGYEVISV  162 (218)
Q Consensus        85 ~ws~~l-G~gdFyyeLaVqIvEvC~~tr~~NGGli~l~el~~~v~k~r-g~~~~~IS~dDI~rAi~~L~~LG~Gf~vi~i  162 (218)
                      +|++.+ |.++||||||+||+|||..+|+.|||||+|+||++++||+| |..  .|||+||++||+.|++||.||.++++
T Consensus        80 ~~s~~l~~~~~f~~ELa~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~--lISp~Di~~A~~~l~~lg~g~~l~~~  157 (223)
T PF04157_consen   80 FWSESLKGSGDFYYELAVQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSE--LISPEDILRACKLLEVLGLGFRLRKF  157 (223)
T ss_dssp             CCCCCCSCHHHHHHHHHHHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSS--T--HHHHHHHHHHHCCCTSSEEEEEE
T ss_pred             hhhhccccchhHHHHHHHHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCC--CcCHHHHHHHHHHHHHcCCCeEEEEe
Confidence            999999 99999999999999999999999999999999999999999 555  99999999999999999999999999


Q ss_pred             C-CEEEEEecC-CCcchhHHHHHHHH--hhcc
Q 027804          163 G-KKKLVRSVP-TELNKDHNQILELA--QVTS  190 (218)
Q Consensus       163 g-~k~~vrSvP-~ELs~Dq~~vLe~a--~~~~  190 (218)
                      + |++||+|+| .|+|.||++||++|  +..|
T Consensus       158 ~sg~~vv~s~~~~e~~~~~~~il~~~~~~~~g  189 (223)
T PF04157_consen  158 GSGVKVVQSVPYSELSKDQSRILELAEEENGG  189 (223)
T ss_dssp             TTTEEEEECST-CHH-HHHHHHHHHH--TTTS
T ss_pred             CCCcEEEEeCCchhhhHHHHHHHHHHHhhcCC
Confidence            9 999999999 99999999999999  4444

The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.

>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=7.1e-22  Score=183.22  Aligned_cols=173  Identities=18%  Similarity=0.253  Sum_probs=145.9

Q ss_pred             CCcchhhhhccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH------HHHHHHHHhhccccCChhHHHHHHHHHHhcCC
Q 027804            3 RRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRS------QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGV   76 (218)
Q Consensus         3 R~vGi~ai~~~~~~~~~y~~~g~~l~~~~~~~L~~QL~~F~~------~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGV   76 (218)
                      |++||++|+|+.+++.+-++...+.+   +++|++.|+..++      ++.++.+..+++|.+|++.|  |+++..++||
T Consensus       196 r~vGI~giEr~~e~q~~~td~~i~~A---FqDLskLMs~Akemv~Lsk~~~~Km~~~~g~i~dDetv~--~ks~llsLGI  270 (432)
T KOG2760|consen  196 RMVGISGIERSLEEQLKKTDKTINNA---FQDLSKLMSLAKEMVSLSKSIAEKMKSKTGEIQDDETVR--FKSYLLSLGI  270 (432)
T ss_pred             eeechhHHHHHHHHHHHhcchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcCchhhhh--hHHhhhhhcc
Confidence            57999999999999999999999988   7788888888775      78888999999999999997  9999999999


Q ss_pred             CCCCCCCCccccccCccchHHHHHHHHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804           77 DPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus        77 DPLas~k~~ws~~lG~gdFyyeLaVqIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                      +...+..++--  . ..-|+.+||.||.|+.+.+.+.|||||+|.|++|++||+||++  .|||+|+.+||+.|+.||-+
T Consensus       271 ~dpvt~~n~~~--s-~~~Y~~~Lakqlse~l~~~lee~ggmisLtdvY~~~NRaRG~e--LiSPedl~~ACe~le~l~~p  345 (432)
T KOG2760|consen  271 LDPVTKDNFGL--S-LSLYHQELAKQLSEFLRLPLEENGGMISLTDVYCRYNRARGTE--LISPEDLVNACELLEHLGVP  345 (432)
T ss_pred             CCcchhccccc--h-HHHHHHHHHHHHHHHHhcchhhcCCEEEHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHhcCCc
Confidence            86555533320  0 1589999999999999999999999999999999999999988  99999999999999999999


Q ss_pred             eEEEEECCEEEEEecCCCcchhHHHHHHHHh
Q 027804          157 YEVISVGKKKLVRSVPTELNKDHNQILELAQ  187 (218)
Q Consensus       157 f~vi~ig~k~~vrSvP~ELs~Dq~~vLe~a~  187 (218)
                      .++.+.+..-+|..  ..-..|.-+++.+.+
T Consensus       346 l~L~kf~SGvlvvq--lKs~~~~e~l~~~l~  374 (432)
T KOG2760|consen  346 LRLRKFNSGVLVVQ--LKSHSDEEKLVDALE  374 (432)
T ss_pred             eEEEEcCCceEEEE--eeccchHHHHHHHHH
Confidence            99999887666554  244445555544433

>cd08767 Cdt1_c The C-terminal fold of replication licensing factor Cdt1 is essential for Cdt1 activity and directly interacts with MCM2-7 helicase

Probab=92.17  E-value=1.1  Score=36.08  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccC-CceEEEEECCEEEEEecCCCc
Q 027804           97 YELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG-NGYEVISVGKKKLVRSVPTEL  175 (218)
Q Consensus        97 yeLaVqIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG-~Gf~vi~ig~k~~vrSvP~EL  175 (218)
                      -+|+-.|--+|.+   .+-..+++++|+..+.....   ..+|.+|++.-++.|.-+= .=+.+.++++..||+..=.  
T Consensus        44 P~la~~v~~if~s---~~k~~l~~e~l~~kl~~S~~---~~~s~~E~E~~l~LL~el~P~Wis~~~~~~~~~lk~~k~--  115 (126)
T cd08767          44 PELARILRNIFVS---EKKTVLPLEELVYKLQASYP---SILSRGEVEEHLRLLAELAPDWISEKSLRKGDYLKIDKK--  115 (126)
T ss_pred             HHHHHHHHHHHHh---cccccccHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHhChHHheeeeeCCceEEEECcc--
Confidence            4667777777777   67899999999999998654   3599999999999997655 4467888899999986653  


Q ss_pred             chhHHHHHH
Q 027804          176 NKDHNQILE  184 (218)
Q Consensus       176 s~Dq~~vLe  184 (218)
                       .|...|.+
T Consensus       116 -~~~~~V~~  123 (126)
T cd08767         116 -VDLEKVRK  123 (126)
T ss_pred             -ccHHHHHH
Confidence             77777764

Cdt1 is a replication licensing factor in eukaryotes that recruits the Minichromosome Maintenance Complex (MCM2-7) to the Origin Recognition Complex (ORC). The Cdt1 protein is divided into three regions based on sequence comparison and biochemical analyses: the N-terminal region (Cdt1_n) binds DNA in a sequence-, strand-, and conformation-independent manner; the middle winged helix fold (Cdt1_m) binds geminin to inhibit both binding of the MCM complex to origins of replication and DNA; and the C-terminal region (Cdt1_c) is essential for Cdt1 activity and directly interacts with the MCM2-7 helicase. Precise duplication of chromosomal DNA is required for genomic stability during replication. Assembly of replication factors to start DNA replication in eukaryotes must occur only once per cell cycle. To form a pre-replicative complex on replicat

>TIGR02147 Fsuc_second hypothetical protein, TIGR02147

Probab=90.79  E-value=2.6  Score=38.18  Aligned_cols=133  Identities=20%  Similarity=0.250  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCC------CCCC--------ccccccCccchHHHHHHHHHH
Q 027804           40 ATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA------SNKG--------FWAELLGIGDFYYELGVQIVE  105 (218)
Q Consensus        40 ~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLa------s~k~--------~ws~~lG~gdFyyeLaVqIvE  105 (218)
                      ..+|.-|..|-...+.   .||.|-  .+.+|..+|++|.+      .+|.        -+++.+|++++=.+--..+|.
T Consensus         8 ~dYR~fl~d~ye~rk~---~~p~fS--~R~fa~~~G~ss~s~L~~v~~Gkr~Ls~~~~~k~a~~l~L~~~E~~yF~~lV~   82 (271)
T TIGR02147         8 TDYRKYLRDYYEERKK---TDPAFS--WRFFAEKAGFSSTSYLNDIIKGKKNLTKRMIPKFAEALGLDEKEAAYFEAMVN   82 (271)
T ss_pred             hhHHHHHHHHHHHHhc---cCcCcC--HHHHHHHhCCCCHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            3466666666666553   699995  89999999999831      1111        355667876655555555555


Q ss_pred             Hhhhccc-------------------------------------------cCCCcccHHHHHHHHHhhcCCCCCCCCHHH
Q 027804          106 ICLATRP-------------------------------------------HNGGLINLQELCNLLRQRRKSNREAVSEDD  142 (218)
Q Consensus       106 vC~~tr~-------------------------------------------~NGGli~l~el~~~v~k~rg~~~~~IS~dD  142 (218)
                      .|.+.-+                                           ..+|=-++.++-.++.       +.||.++
T Consensus        83 f~~ak~~~~k~~~~~~~~~~~~~~~~~~L~~~~~~y~~~W~~~virel~~~~~~~~~~~~ia~~l~-------p~is~~e  155 (271)
T TIGR02147        83 FGQAKTDTEKQQFFEEMQALKPRPRLRVLAADQFEYYRHWYNSVIRELLGVMPFADDPEELAKRCF-------PKISAEQ  155 (271)
T ss_pred             HhccCCHHHHHHHHHHHHHHhhhchheeccHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHhC-------CCCCHHH
Confidence            5555421                                           1222222222222222       4699999


Q ss_pred             HHHHHhhccccCCceEEEEE-CCEEEEEecC-----CCcc-----hhHHHHHHHHhh
Q 027804          143 CLRAISKLKVLGNGYEVISV-GKKKLVRSVP-----TELN-----KDHNQILELAQV  188 (218)
Q Consensus       143 I~rAi~~L~~LG~Gf~vi~i-g~k~~vrSvP-----~ELs-----~Dq~~vLe~a~~  188 (218)
                      |..|++.|..+|    +|+- +.-+|+++.+     .|..     .=|..++++|..
T Consensus       156 v~~sL~~L~~~g----likk~~~g~y~~t~~~l~~~~~~~~~avr~~h~q~l~lA~~  208 (271)
T TIGR02147       156 VKESLDLLERLG----LIKKNEDGFYKQTDKAVSTGDEVIPLAVRQYQKQMIDLAKE  208 (271)
T ss_pred             HHHHHHHHHHCC----CeeECCCCcEEeecceeecCCccchHHHHHHHHHHHHHHHH
Confidence            999999999988    4544 3346777644     2332     348888888876

This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.

>PF05158 RNA_pol_Rpc34: RNA polymerase Rpc34 subunit; InterPro: IPR007832 The family comprises a subunit specific to RNA Pol III, the tRNA specific polymerase

Probab=89.26  E-value=2  Score=39.93  Aligned_cols=81  Identities=17%  Similarity=0.294  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCceEEEEECCEEEEEec-----
Q 027804           97 YELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSV-----  171 (218)
Q Consensus        97 yeLaVqIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~Gf~vi~ig~k~~vrSv-----  171 (218)
                      -+++.+|.+.|.+.  ..+..++.+||...+.        ..+..+++.|++.|-.=|. +++++-+++-..+-+     
T Consensus         8 ~~~~~~l~~~~~~~--~~~~~~~~~~L~~~~~--------~~~~~~~~~~in~Ll~~~~-~~~~~~~~~l~~~~~~~~~a   76 (327)
T PF05158_consen    8 SELEKKLLELCREN--PSPKGFSQEDLQQLIP--------GLDLQELVKAINELLSSGL-LKLLKKGGGLSYKAVSEEEA   76 (327)
T ss_dssp             HHHHHHHHHHHHH-----SS-EEHHHHHHH-T--------TS-HHHHHHHHHHHHHHTS-EEEEE-SSSEEEEE--SSS-
T ss_pred             HHHHHHHHHHHHHh--cCCCCcCHHHHHhhcC--------CCCHHHHHHHHHHHHhCCC-EEEEEcCCEEEEEEeCHHHH
Confidence            57899999999987  5678899999998843        4799999999999977554 888887777666666     


Q ss_pred             --CCCcchhHHHHHHHHhh
Q 027804          172 --PTELNKDHNQILELAQV  188 (218)
Q Consensus       172 --P~ELs~Dq~~vLe~a~~  188 (218)
                        ...|++|+..||.+.+.
T Consensus        77 ~k~~~l~~~e~lvy~~I~~   95 (327)
T PF05158_consen   77 KKLKGLSDEERLVYQLIEE   95 (327)
T ss_dssp             ----SSSCCHHHHHHHHHH
T ss_pred             hhhcCCCHHHHHHHHHHHH
Confidence              34799999999988665

The C34 subunit of Saccharomyces cerevisiae RNA Pol III is part of a subcomplex of three subunits which have no counterpart in the other two nuclear RNA polymerases. This subunit interacts with TFIIIB70 and therefore participates in Pol III recruitment [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2DK8_A 2DK5_A 2YU3_A.

>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A

Probab=85.71  E-value=1.8  Score=36.83  Aligned_cols=65  Identities=22%  Similarity=0.355  Sum_probs=42.3

Q ss_pred             CCHHHHHHHHhhccccCCceEEEEECCEEEEEecCC----------CcchhHHHHHHHHhhccccccccccCcchh
Q 027804          138 VSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPT----------ELNKDHNQILELAQVTSILYQCFPFPHISF  203 (218)
Q Consensus       138 IS~dDI~rAi~~L~~LG~Gf~vi~ig~k~~vrSvP~----------ELs~Dq~~vLe~a~~~~~~~~~~~~~~~~~  203 (218)
                      -+++|+.+|++.|..+|+|+.++.=|.....-..|-          |+......+-+++..+|.-+. =||-.+||
T Consensus        73 ~~~~dm~~A~n~l~~~gGG~vvv~~g~v~a~lpLpi~GlmS~~~~eev~~~~~~l~~~~~~lG~~~~-~p~~tlsf  147 (171)
T PF13382_consen   73 TNDEDMALAANRLIEMGGGIVVVDDGEVLAELPLPIAGLMSDLPAEEVARQLEELEEALRELGCPFD-DPFMTLSF  147 (171)
T ss_dssp             SSHHHHHHHHHHHHHTTSEEEEEETTEEEEEEE-TBTTTBBSS-HHHHHHHHHHHHHHHHTTS-BTT-TBSGGGGG
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEECCEEEEEEeccccceecCCCHHHHHHHHHHHHHHHHHcCCCCC-CHHHHHHH
Confidence            379999999999999999998875333333333442          444455666677777775444 56655655

>PLN02180 gamma-glutamyl transpeptidase 4

Probab=85.13  E-value=1.5  Score=44.28  Aligned_cols=73  Identities=27%  Similarity=0.464  Sum_probs=48.7

Q ss_pred             HHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCCCCccc----cc------cCccchHH-HHHHHHHHHhhhcccc
Q 027804           45 QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWA----EL------LGIGDFYY-ELGVQIVEICLATRPH  113 (218)
Q Consensus        45 ~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~k~~ws----~~------lG~gdFyy-eLaVqIvEvC~~tr~~  113 (218)
                      .|.......+..+.++|.+|+-|..    =| .|+....-+..    +.      -|...||. ++|.+|++-+++    
T Consensus       216 ~la~~l~~~~~~l~~~p~~~~~f~~----~G-~~~~~Gd~l~qp~LA~TLe~IA~~G~d~FY~G~iA~~iv~~~~~----  286 (639)
T PLN02180        216 YLGKAISSHAAMILKDPGLRSVFSR----NG-QVLKPGETCYNPELAQSLETISEQGPGAFYNGTIGEKLVKDVKK----  286 (639)
T ss_pred             HHHHHHHHHHHHHhcChhHHHHhCc----CC-ccCCCCCeeccHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH----
Confidence            4555555666667778888877653    14 45532211111    11      26678887 999999999874    


Q ss_pred             CCCcccHHHHHHH
Q 027804          114 NGGLINLQELCNL  126 (218)
Q Consensus       114 NGGli~l~el~~~  126 (218)
                      +||+|+++||..-
T Consensus       287 ~GG~lT~eDLa~Y  299 (639)
T PLN02180        287 AGGIITMDDLRSY  299 (639)
T ss_pred             cCCCCCHHHHHhC
Confidence            8999999999754

>PLN02198 glutathione gamma-glutamylcysteinyltransferase

Probab=84.79  E-value=1.4  Score=43.71  Aligned_cols=73  Identities=22%  Similarity=0.284  Sum_probs=45.7

Q ss_pred             HHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCCCCccc----cc------cCccchHH-HHHHHHHHHhhhcccc
Q 027804           45 QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWA----EL------LGIGDFYY-ELGVQIVEICLATRPH  113 (218)
Q Consensus        45 ~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~k~~ws----~~------lG~gdFyy-eLaVqIvEvC~~tr~~  113 (218)
                      .|....+..++.|+.+|.+|+-|..    =| .|+....-+..    ++      -|...||. ++|.+|++-|++    
T Consensus       166 ~la~~l~~~~~~l~~~p~~~~~f~~----~G-~~~~~Gd~l~~p~LA~TL~~iA~~G~~~FY~G~iA~~iv~~~~~----  236 (573)
T PLN02198        166 YLYMQMNATRSDILADKGLSDLFVS----NG-ELKKPGTICHNPKLALTLRLIGEYGPKAFYNGTVGVNLVRDIQK----  236 (573)
T ss_pred             HHHHHHHHHHHHHhcChhHHHHcCc----CC-CcCCCCCeecCHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHH----
Confidence            3444455556666677777766642    12 34432211110    11      25667886 799999999964    


Q ss_pred             CCCcccHHHHHHH
Q 027804          114 NGGLINLQELCNL  126 (218)
Q Consensus       114 NGGli~l~el~~~  126 (218)
                      +||+|+++||..-
T Consensus       237 ~GG~lt~~DL~~y  249 (573)
T PLN02198        237 SGGIITLKDLQSY  249 (573)
T ss_pred             cCCCCCHHHHhhC
Confidence            9999999999754

>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A)

Probab=83.50  E-value=2  Score=32.52  Aligned_cols=52  Identities=19%  Similarity=0.314  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCce
Q 027804           96 YYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY  157 (218)
Q Consensus        96 yyeLaVqIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~Gf  157 (218)
                      .-.+..+|.++|......+-| ++++++.+.+ .        ++++||..||+.|.--|-=|
T Consensus        45 ~~~~~~~Vl~~i~~~~~~~~G-v~v~~I~~~l-~--------~~~~~v~~al~~L~~eG~IY   96 (102)
T PF08784_consen   45 LSPLQDKVLNFIKQQPNSEEG-VHVDEIAQQL-G--------MSENEVRKALDFLSNEGHIY   96 (102)
T ss_dssp             S-HHHHHHHHHHHC----TTT-EEHHHHHHHS-T--------S-HHHHHHHHHHHHHTTSEE
T ss_pred             CCHHHHHHHHHHHhcCCCCCc-ccHHHHHHHh-C--------cCHHHHHHHHHHHHhCCeEe
Confidence            457899999999995555556 8899999887 2        79999999999998877533

RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.

>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6

Probab=83.04  E-value=4.1  Score=30.47  Aligned_cols=55  Identities=11%  Similarity=0.129  Sum_probs=40.5

Q ss_pred             HHHHHHhhhccccC--CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804          101 VQIVEICLATRPHN--GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus       101 VqIvEvC~~tr~~N--GGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                      +.||+++.+--..|  .|.|+.+||...+.+.... ...+|++||.+-++.+..=|+|
T Consensus        10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~l-g~k~t~~ev~~m~~~~D~d~dG   66 (88)
T cd05029          10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTI-GSKLQDAEIAKLMEDLDRNKDQ   66 (88)
T ss_pred             HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhcCCCCC
Confidence            46788888776644  4799999999999763221 1358999999988887665554

S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact

>TIGR00066 g_glut_trans gamma-glutamyltranspeptidase

Probab=82.33  E-value=3  Score=40.84  Aligned_cols=32  Identities=25%  Similarity=0.580  Sum_probs=27.5

Q ss_pred             CccchHH-HHHHHHHHHhhhccccCCCcccHHHHHHH
Q 027804           91 GIGDFYY-ELGVQIVEICLATRPHNGGLINLQELCNL  126 (218)
Q Consensus        91 G~gdFyy-eLaVqIvEvC~~tr~~NGGli~l~el~~~  126 (218)
                      |...||. |+|.+|++-+.+    +||+|+++||..-
T Consensus       191 G~~~FY~G~iA~~iv~~~~~----~GG~lt~~DL~~y  223 (516)
T TIGR00066       191 GPDAFYKGDIAESIIDTLQK----NGGIMTKKDLAAY  223 (516)
T ss_pred             CcccccCCHHHHHHHHHHHH----cCCCCCHHHHhhC
Confidence            5678888 999999998874    8999999999744

Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff.

>PF01019 G_glu_transpept: Gamma-glutamyltranspeptidase; InterPro: IPR000101 Gamma-glutamyltranspeptidase (2

Probab=80.46  E-value=2.1  Score=41.59  Aligned_cols=74  Identities=27%  Similarity=0.423  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCCCCccc----cc------cCccchHH-HHHHHHHHHhhhccc
Q 027804           44 SQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWA----EL------LGIGDFYY-ELGVQIVEICLATRP  112 (218)
Q Consensus        44 ~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~k~~ws----~~------lG~gdFyy-eLaVqIvEvC~~tr~  112 (218)
                      ..|....++.+..|+.+|..|+-|..     +=.|+....-+-.    +.      -|...||- +||.+|++-..+   
T Consensus       121 ~~la~~l~~~~~~l~~~~~~~~~f~~-----~G~~~~~Gd~l~~p~LA~TL~~ia~~G~~~FY~G~lA~~iv~~~~~---  192 (510)
T PF01019_consen  121 PSLARALARNADKLRRDPGSRALFLP-----DGRPPREGDILRQPELADTLERIAEEGPDAFYRGELAEKIVADVQA---  192 (510)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHST-----TSSE--TTSEE--HHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHH---
T ss_pred             hhHHhHHHhHHHHHhhhhhHHHHhcc-----CCCcCCCCCEEEHHHHHHHHHHHHhcCchhhcCChHHHHHHHHHHh---
Confidence            37778888888889999999877744     1123332211100    11      25678888 799999998765   


Q ss_pred             cCCCcccHHHHHHH
Q 027804          113 HNGGLINLQELCNL  126 (218)
Q Consensus       113 ~NGGli~l~el~~~  126 (218)
                       +||+|+++|+..-
T Consensus       193 -~GG~lt~~Dla~Y  205 (510)
T PF01019_consen  193 -NGGLLTLEDLAAY  205 (510)
T ss_dssp             -TT-S--HHHHHH-
T ss_pred             -ccCCccHHHHhhc
Confidence             8999999999865

3.2.2 from EC) (GGT) [] catalyzes the transfer of the gamma-glutamyl moiety of glutathione to an acceptor that may be an amino acid, a peptide or water (forming glutamate). GGT plays a key role in the gamma-glutamyl cycle, a pathway for the synthesis and degradation of glutathione and drug and xenobiotic detoxification []. In prokaryotes and eukaryotes, it is an enzyme that consists of two polypeptide chains, a heavy and a light subunit, processed from a single chain precursor by an autocatalytic cleavage. The active site of GGT is known to be located in the light subunit. The sequences of mammalian and bacterial GGT show a number of regions of high similarity []. Pseudomonas cephalosporin acylases (3.5.1 from EC) that convert 7-beta-(4-carboxybutanamido)-cephalosporanic acid (GL-7ACA) into 7-aminocephalosporanic acid (7ACA) and glutaric acid are evolutionary related to GGT and also show some GGT activity []. Like GGT, these GL-7ACA acylases, are also composed of two subunits. As an autocatalytic peptidase GGT belongs to MEROPS peptidase family T3 (gamma-glutamyltransferase family, clan PB(T)). The active site residue for members of this family and family T1 is C-terminal to the autolytic cleavage site. The type example is gamma-glutamyltransferase 1 from Escherichia coli. ; GO: 0003840 gamma-glutamyltransferase activity; PDB: 2DBX_A 2Z8K_D 2Z8I_B 2DBU_D 2E0X_B 2DBW_B 2E0W_B 2DG5_A 2E0Y_C 2Z8J_C ....

>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]

Probab=80.46  E-value=1.9  Score=41.60  Aligned_cols=128  Identities=23%  Similarity=0.361  Sum_probs=84.8

Q ss_pred             HHHHHhhHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhccccC------------ChhHHHHHHHH------
Q 027804           18 DQYRLLGENVAKLRT---------DLMKEQLATFRSQLEDFARKHKNDIRK------------NPTFRSQFHEM------   70 (218)
Q Consensus        18 ~~y~~~g~~l~~~~~---------~~L~~QL~~F~~~L~~FA~kH~~eI~~------------dP~FR~~F~~M------   70 (218)
                      =+|+..|.+++.--=         -.|.+.|..+|+++.   +..++.|++            ||.=-..|...      
T Consensus       251 fRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERIt---stk~GSITSiQavyvPaDDlTDPapattFaHLDat~vL  327 (468)
T COG0055         251 FRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERIT---STKKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVL  327 (468)
T ss_pred             hHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHh---cCCCCceEEEEEEEeccccCCCcchhhhhhhcccceee
Confidence            367777777663211         168889999998874   466667764            78766677654      


Q ss_pred             ---HHhcC----CCCCCCCCCccccccCccchHHHHHHHHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHH-
Q 027804           71 ---CAKVG----VDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDD-  142 (218)
Q Consensus        71 ---C~siG----VDPLas~k~~ws~~lG~gdFyyeLaVqIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dD-  142 (218)
                         .++.|    ||||.|++..-.- .=+|+=+|++|.++-.+.++.++       |.|++..+    |+.  ++|++| 
T Consensus       328 sR~ia~~GIyPAvDPL~StSr~l~p-~ivGe~Hy~va~~vq~iLqrYke-------LqDIIaIL----Gmd--ELseedk  393 (468)
T COG0055         328 SRQIAALGIYPAVDPLDSTSRALDP-KIVGEEHYEVAREVQSILQRYKE-------LQDIIAIL----GMD--ELSEEDK  393 (468)
T ss_pred             eHhHHhcCCCcccCcccccccccCc-ccccHHHHHHHHHHHHHHHHHHH-------HHHHHHHh----Cch--hcChhHH
Confidence               34556    6999877432211 12689999999999999999654       66666554    333  789888 


Q ss_pred             --HHHHHhhccccCCceEEEEE
Q 027804          143 --CLRAISKLKVLGNGYEVISV  162 (218)
Q Consensus       143 --I~rAi~~L~~LG~Gf~vi~i  162 (218)
                        |.||-+.=+=|.-.|-|-+.
T Consensus       394 ~~V~rArki~~FlSQpF~vAE~  415 (468)
T COG0055         394 LTVARARKIQRFLSQPFFVAEV  415 (468)
T ss_pred             HHHHHHHHHHHHhcCcchhhhe
Confidence              55666655556666655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
2zme_A	258	Integrated Structural And Functional Model Of The H		3e-53
3cuq_A	234	Integrated Structural And Functional Model Of The H		9e-51
1u5t_A	233	Structure Of The Escrt-Ii Endosomal Trafficking Com		3e-25

>pdb|2ZME|A Chain A, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 258

Iteration: 1
 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/186 (52%), Positives = 130/186 (69%)
Query: 2   RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
           RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct: 3   RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 62  TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
            FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct: 63  EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
           EL   + + R    + VS+DD +RAI KLK LG G+ +I VG   L++SVP ELN DH  
Sbjct: 123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182
Query: 182 ILELAQ 187
           +L+LA+
Sbjct: 183 VLQLAE 188

>pdb|3CUQ|A Chain A, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 234

Iteration: 1
 Score =  196 bits (498), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 89/153 (58%), Positives = 115/153 (75%)
Query: 35  MKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGD 94
           M +QL  F++ LE+FA KHK +IRKNP FR QF +MCA +GVDPLAS KGFW+E+LG+GD
Sbjct: 12  MSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGD 71
Query: 95  FYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLG 154
           FYYELGVQI+E+CLA +  NGGLI L+EL   + + R    + VS+DD +RAI KLK LG
Sbjct: 72  FYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALG 131
Query: 155 NGYEVISVGKKKLVRSVPTELNKDHNQILELAQ 187
            G+ +I VG   L++SVP ELN DH  +L+LA+
Sbjct: 132 TGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAE 164

>pdb|1U5T|A Chain A, Structure Of The Escrt-Ii Endosomal Trafficking Complex Length = 233

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 105/173 (60%), Gaps = 13/173 (7%)
Query: 19  QYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDP 78
           +Y  + + + + ++  +++QL  F+ +L +FA+KH ++++ +P FRS+F  MC+ +G+DP
Sbjct: 16  KYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDP 75
Query: 79  LA---SNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNR 135
           L+    +K     L  + DFYYE+ ++++EIC  T+  NGG+I+ QEL  +    RK N 
Sbjct: 76  LSLFDRDK----HLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKV--HFRKLN- 128
Query: 136 EAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQV 188
             V  DD  ++I  LK L   +E+  +  KK +RSVP EL  D  +ILE+  +
Sbjct: 129 --VGLDDLEKSIDMLKSL-ECFEIFQIRGKKFLRSVPNELTSDQTKILEICSI 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
3cuq_A	234	Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nu	7e-89
1u5t_A	233	Appears to BE functionally related to SNF7; SNF8P;	2e-86
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	7e-19
1u5t_B	169	Defective in vacuolar protein sorting; VPS36P; ESC	5e-12
3cuq_B	218	Vacuolar protein-sorting-associated protein 36; ES	2e-11

>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A Length = 234

 Score =  260 bits (666), Expect = 7e-89
 Identities = 91/166 (54%), Positives = 120/166 (72%)

Query: 24  GENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNK 83
           G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP FR QF +MCA +GVDPLAS K
Sbjct: 1   GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGK 60

Query: 84  GFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDC 143
           GFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+EL   + + R    + VS+DD 
Sbjct: 61  GFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDL 120

Query: 144 LRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQVT 189
           +RAI KLK LG G+ +I VG   L++SVP ELN DH  +L+LA+  
Sbjct: 121 IRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKN 166

>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A Length = 233

 Score =  254 bits (650), Expect = 2e-86
 Identities = 58/187 (31%), Positives = 106/187 (56%), Gaps = 9/187 (4%)

Query: 3   RRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPT 62
           ++ G+           +Y  + + + + ++  +++QL  F+ +L +FA+KH ++++ +P 
Sbjct: 2   KQFGLAAFDELK--DGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPE 59

Query: 63  FRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQE 122
           FRS+F  MC+ +G+DPL+        L  + DFYYE+ ++++EIC  T+  NGG+I+ QE
Sbjct: 60  FRSKFMHMCSSIGIDPLSL-FDRDKHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQE 118

Query: 123 LCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQI 182
           L  +  ++       V  DD  ++I  LK L   +E+  +  KK +RSVP EL  D  +I
Sbjct: 119 LEKVHFRKLN-----VGLDDLEKSIDMLKSLE-CFEIFQIRGKKFLRSVPNELTSDQTKI 172

Query: 183 LELAQVT 189
           LE+  + 
Sbjct: 173 LEICSIL 179

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566

 Score = 83.6 bits (205), Expect = 7e-19
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 11/191 (5%)

Query: 2   RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
             R GI  L+ +   +     +  N A   TDL   +L +  + +E   +     ++   
Sbjct: 320 LSRIGISSLEKSRENQLLNNDILFNNA--LTDL--NKLMSLATSIERLYKNSNITMKTKT 375

Query: 62  TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRP-----HNGG 116
                   +       PL        + L    F  E+  +I E  L+         N  
Sbjct: 376 LNLQDESTVNEPKTRRPLLILD--REKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYM 433

Query: 117 LINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELN 176
           +I L +L  +  +  +     +S  +   A  + + LG     +    K+++     + +
Sbjct: 434 IITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKVNKRILCVTSEKFD 493

Query: 177 KDHNQILELAQ 187
               ++++L  
Sbjct: 494 VVKEKLVDLIG 504

>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 169

 Score = 61.1 bits (148), Expect = 5e-12
 Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 95  FYYELGVQIVEICLATRP-----HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISK 149
           F  E+  +I E  L+         N  +I L +L  +  +  +     +S  +   A  +
Sbjct: 12  FLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACER 71

Query: 150 LKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQ 187
            + LG     +    K+++     + +    ++++L  
Sbjct: 72  FEHLGLNELKLVKVNKRILCVTSEKFDVVKEKLVDLIG 109

>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B Length = 218

 Score = 60.0 bits (145), Expect = 2e-11
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 8/159 (5%)

Query: 32  TDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLG 91
            DL   +L     ++ + ++   N I+      ++   +  K  +  +        E  G
Sbjct: 11  EDL--SKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYG 68

Query: 92  IGDFYY-ELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKL 150
            G  Y+ +L  Q+  I        GG+++L E+  L+ + R    E +S +D + A   L
Sbjct: 69  SGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGM--ELLSPEDLVNACKML 126

Query: 151 KVLGNGYEV--ISVGKKKLVRSVPTELNKDHNQILELAQ 187
           + L     +     G   +      E  +     LE   
Sbjct: 127 EALKLPLRLRVFDSGVMVIELQSHKE-EEMVASALETVS 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
1u5t_A	233	Appears to BE functionally related to SNF7; SNF8P;	100.0
3cuq_A	234	Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nu	100.0
3cuq_B	218	Vacuolar protein-sorting-associated protein 36; ES	100.0
1w7p_D	566	VPS36P, YLR417W; ESCRT-II complex, endosomal prote	99.95
1u5t_B	169	Defective in vacuolar protein sorting; VPS36P; ESC	99.9
3i5g_C	159	Myosin catalytic light chain LC-1, mantle muscle;	90.8
2lmt_A	148	Calmodulin-related protein 97A; spermatogenesis, m	90.76
2ovk_B	153	RLC, myosin regulatory light chain LC-2, mantle mu	89.0
2mys_C	149	Myosin; muscle protein, motor protein; HET: MLY; 2	88.62
3ox6_A	153	Calcium-binding protein 1; EF-hand, calcium-sensor	88.06
3fwb_A	161	Cell division control protein 31; gene gating, com	87.24
3i5g_B	153	Myosin regulatory light chain LC-2, mantle muscle;	84.59
2ovk_C	159	Myosin catalytic light chain LC-1, mantle muscle,	84.39
2qac_A	146	Myosin A tail domain interacting protein MTIP; mal	83.64
3qrx_A	169	Centrin; calcium-binding, EF-hand, cell division,	82.99
1exr_A	148	Calmodulin; high resolution, disorder, metal trans	82.7
1wdc_C	156	Scallop myosin; calcium binding protein, muscle pr	82.56
3j04_B	143	Myosin regulatory light chain 2, smooth muscle MA	82.08
4ds7_A	147	Calmodulin, CAM; protein binding, metal binding, s	81.07
1top_A	162	Troponin C; contractIle system protein; 1.78A {Gal	80.54

>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A

Probab=100.00  E-value=7e-70  Score=474.88  Aligned_cols=180  Identities=32%  Similarity=0.661  Sum_probs=157.1

Q ss_pred             CCCcchhhhhccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCC-
Q 027804            2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA-   80 (218)
Q Consensus         2 rR~vGi~ai~~~~~~~~~y~~~g~~l~~~~~~~L~~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLa-   80 (218)
                      |||+||+||+  ++++++|+++|++++++|+++|++||++||++|++||++|++||++||+||++|++||++||||||+ 
T Consensus         1 rr~~G~~a~~--~~~~~~~~~~g~~l~~~~~~~l~~Ql~~F~~~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVDPLa~   78 (233)
T 1u5t_A            1 MKQFGLAAFD--ELKDGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSL   78 (233)
T ss_dssp             ---------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             CCCccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCCCCcc
Confidence            6899999999  6889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCccccccCccchHHHHHHHHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCceEEE
Q 027804           81 SNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVI  160 (218)
Q Consensus        81 s~k~~ws~~lG~gdFyyeLaVqIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~Gf~vi  160 (218)
                      |+||  +++||+|||||||||||||||++||++|||||+|+||+++++|+     .+||+|||+|||++|++| +||+|+
T Consensus        79 s~kg--~~~lg~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~-----~~IS~dDi~rAik~L~~L-~gf~v~  150 (233)
T 1u5t_A           79 FDRD--KHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRK-----LNVGLDDLEKSIDMLKSL-ECFEIF  150 (233)
T ss_dssp             TTSS--GGGTTHHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTT-----TTCCHHHHHHHHHHHTTT-CCCCEE
T ss_pred             CCcc--ccccCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhh-----cCCCHHHHHHHHHHhhhc-cCeEEE
Confidence            9999  89999999999999999999999999999999999999999997     489999999999999999 999999


Q ss_pred             EECCEEEEEecCCCcchhHHHHHHHHhhccc
Q 027804          161 SVGKKKLVRSVPTELNKDHNQILELAQVTSI  191 (218)
Q Consensus       161 ~ig~k~~vrSvP~ELs~Dq~~vLe~a~~~~~  191 (218)
                      ++||++||||||.|||+||++||++|+..|.
T Consensus       151 ~v~g~~~vqsvp~el~~D~~~vLe~a~~~g~  181 (233)
T 1u5t_A          151 QIRGKKFLRSVPNELTSDQTKILEICSILGY  181 (233)
T ss_dssp             EETTEEEECCSSSCCCTTHHHHHHTTTTTSC
T ss_pred             EECCEEEEEeCCCccchHHHHHHHHHHhcCc
Confidence            9999999999999999999999999997543

>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A

Probab=100.00  E-value=2.3e-68  Score=465.50  Aligned_cols=168  Identities=54%  Similarity=0.939  Sum_probs=155.6

Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCCCCccccccCccchHHHHHHHH
Q 027804           24 GENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQI  103 (218)
Q Consensus        24 g~~l~~~~~~~L~~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~k~~ws~~lG~gdFyyeLaVqI  103 (218)
                      |++++++|+++|++||++||++|++||++|++||++||+||++|++||++||||||+++||||+++||+|||||||||||
T Consensus         1 g~~l~~~~~~~~~~Ql~~F~~~L~~FA~kH~~eI~~dp~fR~~F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqI   80 (234)
T 3cuq_A            1 GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQI   80 (234)
T ss_dssp             ---------CTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCceEEEEECCEEEEEecCCCcchhHHHHH
Q 027804          104 VEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQIL  183 (218)
Q Consensus       104 vEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~Gf~vi~ig~k~~vrSvP~ELs~Dq~~vL  183 (218)
                      ||||++||++|||||+|+||+|+++|+||....+||+|||+|||++|++||+||+|+++||++||||||.|||+||++||
T Consensus        81 vEvC~~tr~~nGGli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG~g~~v~~~~g~~~VqSvp~el~~D~~~vL  160 (234)
T 3cuq_A           81 IEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVL  160 (234)
T ss_dssp             HHHHHHHHHHHSSEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECSCCCCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcCCCeEEEEECCEEEEEeCCCccchHHHHHH
Confidence            99999999999999999999999999999866799999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccc
Q 027804          184 ELAQVTSI  191 (218)
Q Consensus       184 e~a~~~~~  191 (218)
                      ++|+.+|.
T Consensus       161 ela~~~g~  168 (234)
T 3cuq_A          161 QLAEKNGY  168 (234)
T ss_dssp             HHHTTTSE
T ss_pred             HHHHhcCc
Confidence            99997654

>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B

Probab=100.00  E-value=3.5e-39  Score=278.48  Aligned_cols=150  Identities=15%  Similarity=0.238  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHH------HHHHHHHHhhccccCChhHHHHHHHHHHhcCCC-CCCCCCCccccccCccchHHHHHHHHH
Q 027804           32 TDLMKEQLATFRS------QLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVD-PLASNKGFWAELLGIGDFYYELGVQIV  104 (218)
Q Consensus        32 ~~~L~~QL~~F~~------~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVD-PLas~k~~ws~~lG~gdFyyeLaVqIv  104 (218)
                      +++|+..|+..++      ++.+..++.++++++|+.  .+|++||++|||| |+++ ++||+    ++||||||||||+
T Consensus        10 f~DL~~LM~~Ak~mv~la~~~~~~~~~~~~~~~~~e~--~~f~~m~~slGvd~Pl~~-~~~~s----~~~f~~ELa~qi~   82 (218)
T 3cuq_B           10 FEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDET--IRFKSYLLSMGIANPVTR-ETYGS----GTQYHMQLAKQLA   82 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGCC----------CCS--HHHHHHHHHHTCCCHHHH-TTSSC----SCHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHH--HHHHHHHHHcCCCCcchh-hccCc----ccHHHHHHHHHHH
Confidence            6677777777775      222233333445566664  4799999999999 7775 68997    7999999999999


Q ss_pred             HHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCceEEEEEC-CEEEEEecCCCcchhHHHHH
Q 027804          105 EICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVG-KKKLVRSVPTELNKDHNQIL  183 (218)
Q Consensus       105 EvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~Gf~vi~ig-~k~~vrSvP~ELs~Dq~~vL  183 (218)
                      |+|.+|++.|||||+|.||++++||+||.  ..|||+||++||++|++||.||.+++++ |+++|+|+|.|++.||++|+
T Consensus        83 e~c~~~~~~~GG~I~L~dl~~~~nraRG~--~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il  160 (218)
T 3cuq_B           83 GILQVPLEERGGIMSLTEVYCLVNRARGM--ELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASAL  160 (218)
T ss_dssp             HHHHHHHHHTTSEEEHHHHHHHHHHTCSS--SCCCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCGGGGHHHHH
T ss_pred             HHHHHHHHhCCCeEEHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCchHHHHHHHH
Confidence            99999999999999999999999999986  4899999999999999999999999998 79999999999999999999


Q ss_pred             HHHhhcc
Q 027804          184 ELAQVTS  190 (218)
Q Consensus       184 e~a~~~~  190 (218)
                      ++|+..|
T Consensus       161 ~~~~~~g  167 (218)
T 3cuq_B          161 ETVSEKG  167 (218)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHCC
Confidence            9999765

>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=99.95  E-value=3.5e-28  Score=233.90  Aligned_cols=171  Identities=16%  Similarity=0.127  Sum_probs=93.0

Q ss_pred             CCcchhhhhccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH------HHHHHHHHhhccccCChh--HHHHHHHHHHhc
Q 027804            3 RRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRS------QLEDFARKHKNDIRKNPT--FRSQFHEMCAKV   74 (218)
Q Consensus         3 R~vGi~ai~~~~~~~~~y~~~g~~l~~~~~~~L~~QL~~F~~------~L~~FA~kH~~eI~~dP~--FR~~F~~MC~si   74 (218)
                      +++||+||+++.+++.+-++...+-+   +++|++.|+..++      .+....++.+.+|..|..  =..+|+.+.   
T Consensus       321 ~~~GI~gler~~e~~~~~~~~~i~~A---f~DL~~LM~~AkemV~La~~~~~~~~~~~~~~s~~~~~~e~~~~~s~L---  394 (566)
T 1w7p_D          321 SRIGISSLEKSRENQLLNNDILFNNA---LTDLNKLMSLATSIERLYKNSNITMKTKTLNLQDESTVNEPKTRRPLL---  394 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCccchhhHhhHhhc---
Confidence            46899999999988888888777777   6677777777775      444444444455654321  112455544   


Q ss_pred             CCCCCCCCCCccccccC-ccchHHHHHHHHHHHhhhcc----cc-CCCcccHHHHHHHHHhh-cCCCCCCCCHHHHHHHH
Q 027804           75 GVDPLASNKGFWAELLG-IGDFYYELGVQIVEICLATR----PH-NGGLINLQELCNLLRQR-RKSNREAVSEDDCLRAI  147 (218)
Q Consensus        75 GVDPLas~k~~ws~~lG-~gdFyyeLaVqIvEvC~~tr----~~-NGGli~l~el~~~v~k~-rg~~~~~IS~dDI~rAi  147 (218)
                         |+. +     +++| .+||||||||||+|+|.+++    ++ |||||+|.||++++||+ |+. ..+|||+||++||
T Consensus       395 ---~Vt-r-----d~~~s~~~f~~ELA~qI~E~c~~~~~~~l~~~nGGmItL~DL~~~~NRa~R~g-~elISp~Dll~A~  464 (566)
T 1w7p_D          395 ---ILD-R-----EKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIG-TGLISPMEMREAC  464 (566)
T ss_dssp             ----CC-S-----SCCCCHHHHHHHHHHHHHHHHHHTTCCSSCSCCCCEEEHHHHHHHHHHHTTTT-TCCCCHHHHHHHH
T ss_pred             ---ccc-h-----hhcCChhHHHHHHHHHHHHHHHhhhcccchhcCcCeEEHHHHHHHHHHhccCC-CCccCHHHHHHHH
Confidence               443 4     3333 58999999999999999999    88 99999999999999999 942 2499999999999


Q ss_pred             hhccccCCceE-EEEECCEEEEEecCCCcchhHHHHHHHHhhcc
Q 027804          148 SKLKVLGNGYE-VISVGKKKLVRSVPTELNKDHNQILELAQVTS  190 (218)
Q Consensus       148 ~~L~~LG~Gf~-vi~ig~k~~vrSvP~ELs~Dq~~vLe~a~~~~  190 (218)
                      ++|++||.||. +++++++.+|+++|.+ +.||++||++|+..+
T Consensus       465 ~~le~Lg~~~~~L~~~~sgvlVvs~~~~-~~~~~~il~l~~~~g  507 (566)
T 1w7p_D          465 ERFEHLGLNELKLVKVNKRILCVTSEKF-DVVKEKLVDLIGDNP  507 (566)
T ss_dssp             TTGGGGTCTTCEEEECSSSCEEEESSCH-HHHHHHHHHHHTTST
T ss_pred             HHHHHcCCCeEEEEEECCEEEEEcCCCc-hHHHHHHHHHHHhcC
Confidence            99999999999 9999988999999999 999999999998754

>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54

Probab=99.90  E-value=6.7e-24  Score=176.91  Aligned_cols=94  Identities=20%  Similarity=0.259  Sum_probs=84.6

Q ss_pred             ccchHHHHHHHHHHHhh---h-ccccCCC-cccHHHHHHHHHhh-cCCCCCCCCHHHHHHHHhhccccCCc-eEEEEECC
Q 027804           92 IGDFYYELGVQIVEICL---A-TRPHNGG-LINLQELCNLLRQR-RKSNREAVSEDDCLRAISKLKVLGNG-YEVISVGK  164 (218)
Q Consensus        92 ~gdFyyeLaVqIvEvC~---~-tr~~NGG-li~l~el~~~v~k~-rg~~~~~IS~dDI~rAi~~L~~LG~G-f~vi~ig~  164 (218)
                      -.+||||||+||+|+|.   + +++.||| ||+|.||++++||+ |+ ....|||+|+++||++|++||.| |.++++++
T Consensus         9 ~~~f~~ELa~qi~e~c~~~~~~~~~~~GG~~I~L~dl~~~~nra~R~-g~~lISp~Dl~~A~~~l~~Lg~~~~~l~~~~s   87 (169)
T 1u5t_B            9 KELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRI-GTGLISPMEMREACERFEHLGLNELKLVKVNK   87 (169)
T ss_dssp             STTHHHHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTS-SSCCCCHHHHHHHHTTTGGGTCCSCEEEEETT
T ss_pred             hhHHHHHHHHHHHHHHhhcchhhHHhcCceeEEHHHHHHHHHHhhcC-CCCccCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            37999999999999999   7 9999999 99999999999999 94 22499999999999999999999 99999998


Q ss_pred             EEEEEecCCCcchhH--HHHHHHHhhc
Q 027804          165 KKLVRSVPTELNKDH--NQILELAQVT  189 (218)
Q Consensus       165 k~~vrSvP~ELs~Dq--~~vLe~a~~~  189 (218)
                      +.+|+   .++++|+  ++|+++|+..
T Consensus        88 g~~V~---~~~~~d~~~~~il~~~~~~  111 (169)
T 1u5t_B           88 RILCV---TSEKFDVVKEKLVDLIGDN  111 (169)
T ss_dssp             TEEEE---ESSCSHHHHHHHHHHHHHS
T ss_pred             eeEEE---eCCChhHHHHHHHHHHHhc
Confidence            77777   3666666  9999999865

>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C

Probab=90.80  E-value=2.2  Score=32.92  Aligned_cols=94  Identities=13%  Similarity=0.296  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHH--HhhccccCChhHHHHHHHHHHhcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhccccC
Q 027804           37 EQLATFRSQLEDFAR--KHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHN  114 (218)
Q Consensus        37 ~QL~~F~~~L~~FA~--kH~~eI~~dP~FR~~F~~MC~siGVDPLas~k~~ws~~lG~gdFyyeLaVqIvEvC~~tr~~N  114 (218)
                      +|++.||++...|=.  .+.+.|..+     .|+.++.++|++|-..      +              |-++ ...-..+
T Consensus         6 eqi~elre~F~~fD~~~d~dG~I~~~-----El~~~lr~lG~~~t~~------e--------------l~~~-~~~d~~~   59 (159)
T 3i5g_C            6 DEIEEVREVFDLFDFWDGRDGDVDAA-----KVGDLLRCLGMNPTEA------Q--------------VHQH-GGTKKMG   59 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSSCEEGG-----GHHHHHHHTTCCCCHH------H--------------HHTT-TCCSSTT
T ss_pred             HHHHHHHHHHHHHCcCCCCCCeECHH-----HHHHHHHHcCCCCCHH------H--------------HHHH-HcccccC
Confidence            467778888888865  345678755     3667888999987421      0              0111 1122234


Q ss_pred             CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCce
Q 027804          115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY  157 (218)
Q Consensus       115 GGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~Gf  157 (218)
                      .|-|+++|.+..+.+..... ..-++++|.+|-+.+-.=|+|+
T Consensus        60 ~g~i~f~eFl~~~~~~~~~~-~~~~~~~l~~aF~~fD~d~~G~  101 (159)
T 3i5g_C           60 EKAYKLEEILPIYEEMSSKD-TGTAADEFMEAFKTFDREGQGL  101 (159)
T ss_dssp             SCEECHHHHHHHHHHHTTCC-TTCCHHHHHHHHHHHCTTSSSE
T ss_pred             CCcccHHHHHHHHHHhhccc-ccchHHHHHHHHHHHhcCCCCc
Confidence            46666666666555433221 2345666666666666666664

>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A

Probab=90.76  E-value=1.5  Score=32.85  Aligned_cols=38  Identities=21%  Similarity=0.468  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCC
Q 027804           37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL   79 (218)
Q Consensus        37 ~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPL   79 (218)
                      +|++.+++....|=.++.+.|..+.     |..++.++|.+|.
T Consensus         7 eqi~el~~~F~~~D~d~~G~I~~~E-----l~~~l~~~~~~~~   44 (148)
T 2lmt_A            7 EQIAEFKDAFVQFDKEGTGKIATRE-----LGTLMRTLGQNPT   44 (148)
T ss_dssp             HHHHHHHHHHHHHHCSSCCEEEGGG-----HHHHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCCeECHHH-----HHHHHHhcCCCch
Confidence            4667788888889889999998763     6678888998875

>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*

Probab=88.62  E-value=2.8  Score=30.20  Aligned_cols=97  Identities=16%  Similarity=0.263  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhccccCCC
Q 027804           37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGG  116 (218)
Q Consensus        37 ~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~k~~ws~~lG~gdFyyeLaVqIvEvC~~tr~~NGG  116 (218)
                      .|+..++.....|-..+.+.|..+     .|..++.++|..|-..                 -..+++..+ ...+.|||
T Consensus         5 ~~~~~l~~~F~~~D~~~~G~i~~~-----el~~~l~~~~~~~~~~-----------------~~~~l~~~~-~~~d~~~g   61 (149)
T 2mys_C            5 AAADDFKEAFLLFDRTGDAKITAS-----QVGDIARALGQNPTNA-----------------EINKILGNP-SKEEMNAA   61 (149)
T ss_pred             HHHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHhCCCCCHH-----------------HHHHHHHHh-hhccccCC
Confidence            345556666777777777777643     5667788888765320                 011122222 12244557


Q ss_pred             cccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCce
Q 027804          117 LINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGY  157 (218)
Q Consensus       117 li~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~Gf  157 (218)
                      .|+..|.+..+....... ..-+.+.+..+.+.+.+=|+|+
T Consensus        62 ~i~~~eF~~~~~~~~~~~-~~~~~~~~~~~F~~~D~d~~G~  101 (149)
T 2mys_C           62 AITFEEFLPMLQAAANNK-DQGTFEDFVEGLRVFDKEGNGT  101 (149)
T ss_pred             cCcHHHHHHHHHHHhccC-CcchHHHHHHHHHHhCCCCCce
Confidence            788888777666541110 1234555555555555545553

>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A

Probab=88.06  E-value=5.8  Score=28.51  Aligned_cols=111  Identities=16%  Similarity=0.259  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCC-CCccc-------cccCccchHHHHH---------
Q 027804           38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFWA-------ELLGIGDFYYELG---------  100 (218)
Q Consensus        38 QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~-k~~ws-------~~lG~gdFyyeLa---------  100 (218)
                      ++..++.....|-..+.+.|..+     .|..++.++|..|.... ...|.       ..+...+|..-+.         
T Consensus         9 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~   83 (153)
T 3ox6_A            9 EIEELREAFREFDKDKDGYINCR-----DLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETAD   83 (153)
T ss_dssp             HHHHHHHHHHHHHHHCSSSCCHH-----HHHHHHHHTTCCCCHHHHHHHHHHHHTTSTTCCCHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHcCCCCCHHHHHHHHHHhCCCCCccCcHHHHHHHHHHHhhccccc
Confidence            44556666666777777777653     56677777887654210 00111       1112234433222         


Q ss_pred             ----HHHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804          101 ----VQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus       101 ----VqIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                          ..+.++...--..+.|.|+.+|+...+...-|   ..+|++++...++.+..=+.|
T Consensus        84 ~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~~d~~~dg  140 (153)
T 3ox6_A           84 MIGVKELRDAFREFDTNGDGEISTSELREAMRALLG---HQVGHRDIEEIIRDVDLNGDG  140 (153)
T ss_dssp             HHCHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHHHS---SCCCHHHHHHHHHHHCSSSSS
T ss_pred             cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhc---CCCCHHHHHHHHHHhCCCCCC
Confidence                12222222222334588888888888776333   247888887777776554444

>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A

Probab=87.24  E-value=4.4  Score=29.64  Aligned_cols=109  Identities=13%  Similarity=0.257  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCC-CCccc-------cccCccchHHHHHH--------H
Q 027804           39 LATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFWA-------ELLGIGDFYYELGV--------Q  102 (218)
Q Consensus        39 L~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~-k~~ws-------~~lG~gdFyyeLaV--------q  102 (218)
                      +..++.....|-..+.+.|..+     .|..++.++|+.|-... ...|.       ..+...+|..-+..        +
T Consensus        22 ~~~l~~~F~~~D~~~~G~i~~~-----e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~   96 (161)
T 3fwb_A           22 KQEIYEAFSLFDMNNDGFLDYH-----ELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLD   96 (161)
T ss_dssp             HHHHHHHHHHHCTTSSSEECHH-----HHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSCEEHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCeEeHHHHHHHHHHHHhcCCcHH
Confidence            3445555556666666666654     46677777787654110 00111       11222344433332        2


Q ss_pred             HHHHhhhccccC-CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804          103 IVEICLATRPHN-GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus       103 IvEvC~~tr~~N-GGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                      -+.-+...-+.| -|.|+.+|+...+... +   ..+|++++...++.+..=+.|
T Consensus        97 ~~~~~F~~~D~d~~G~i~~~el~~~l~~~-~---~~~~~~~~~~~~~~~d~~~~g  147 (161)
T 3fwb_A           97 EIKRAFQLFDDDHTGKISIKNLRRVAKEL-G---ETLTDEELRAMIEEFDLDGDG  147 (161)
T ss_dssp             HHHHHHHHHCTTCSSEECHHHHHHHHHHT-T---CCCCHHHHHHHHHTTCSSSSS
T ss_pred             HHHHHHHHHcCCCCCeEeHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCCCCCC
Confidence            223333334444 4899999998888764 2   358888888888877654555

>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B

Probab=84.59  E-value=1.8  Score=33.19  Aligned_cols=106  Identities=14%  Similarity=0.204  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCC-CCccccc---cCccchHHHHH---------HHH
Q 027804           37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFWAEL---LGIGDFYYELG---------VQI  103 (218)
Q Consensus        37 ~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~-k~~ws~~---lG~gdFyyeLa---------VqI  103 (218)
                      +|++.+++....|=+++.+.|..+     .|...+.++|.+|.... ...+...   .....|...++         ..+
T Consensus        13 ~qi~elk~~F~~~D~d~dG~I~~~-----El~~~l~~lg~~~~~~~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~~~~~l   87 (153)
T 3i5g_B           13 RQMQELKEAFTMIDQDRDGFIGME-----DLKDMFSSLGRVPPDDELNAMLKECPGQLNFTAFLTLFGEKVSGTDPEDAL   87 (153)
T ss_dssp             HHHHHHHHHHHHHCCSTTSCCCHH-----HHHHHHHHTTSCCCHHHHHHHHHTSSSCCCSHHHHHTTTTTTTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCCeEcHH-----HHHHHHHHcCCCccHHHHHHHHHhccCCccHHHHHHHHHhhhcccccHHHH
Confidence            466778888888888888888765     46788888999887210 0011110   11223332221         123


Q ss_pred             HHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc
Q 027804          104 VEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK  151 (218)
Q Consensus       104 vEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~  151 (218)
                      .++-..-=..+-|.|+..||...+... |   ..+|+++|..-++..-
T Consensus        88 ~~aF~~fD~d~~G~I~~~el~~~l~~~-g---~~ls~~ei~~~~~~~D  131 (153)
T 3i5g_B           88 RNAFSMFDEDGQGFIPEDYLKDLLENM-G---DNFSKEEIKNVWKDAP  131 (153)
T ss_dssp             HHHHHTTCSSCSSCCCHHHHHHHHHSS-S---SCCCHHHHHHHHTTCC
T ss_pred             HHHHhccccCCCCeEeHHHHHHHHHHc-C---CcCCHHHHHHHHHHhC
Confidence            333333323445899999998887653 3   3589999887777654

>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A

Probab=83.64  E-value=3.9  Score=29.78  Aligned_cols=104  Identities=16%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHHh-hccccCChhHHHHHHHHHHhcCCCCCCCC-CC----ccccccCccchHHHHHH--------H
Q 027804           37 EQLATFRSQLEDFARKH-KNDIRKNPTFRSQFHEMCAKVGVDPLASN-KG----FWAELLGIGDFYYELGV--------Q  102 (218)
Q Consensus        37 ~QL~~F~~~L~~FA~kH-~~eI~~dP~FR~~F~~MC~siGVDPLas~-k~----~ws~~lG~gdFyyeLaV--------q  102 (218)
                      +++..++.....|-.++ .+.|..+     .|+.++.++|.+|-... ..    +..+ +...+|..-+..        .
T Consensus        11 ~~~~~l~~~F~~~D~d~~~G~i~~~-----el~~~l~~~g~~~~~~~~~~l~~~~d~~-i~~~eF~~~~~~~~~~~~~~~   84 (146)
T 2qac_A           11 EEKVDESDVRIYFNEKSSGGKISID-----NASYNARKLGLAPSSIDEKKIKELYGDN-LTYEQYLEYLSICVHDKDNVE   84 (146)
T ss_dssp             HHHSCHHHHHHHHHHHCBTTBEEHH-----HHHHHHHHTTCCCCHHHHHHHHHHHCSE-ECHHHHHHHHHHTCCTTCCHH
T ss_pred             HHHHHHHHHHHHhCccCCCCcccHH-----HHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCHHHHHHHHHHHhcCcchHH
Confidence            35555667777777777 7777643     56677778887764110 00    1111 233344332221        1


Q ss_pred             HHHHhhhccccC-CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhc
Q 027804          103 IVEICLATRPHN-GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKL  150 (218)
Q Consensus       103 IvEvC~~tr~~N-GGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L  150 (218)
                      -+.-+-..-+.| -|.|+.+|+...+... |   ..+|++++...++.+
T Consensus        85 ~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g---~~~~~~~~~~~~~~~  129 (146)
T 2qac_A           85 ELIKMFAHFDNNCTGYLTKSQMKNILTTW-G---DALTDQEAIDALNAF  129 (146)
T ss_dssp             HHHHHHHTTCTTCSSEEEHHHHHHHHHHS-S---SCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHh-C---CCCCHHHHHHHHHHc
Confidence            222333334444 4899999999888764 3   358999998888877

>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A

Probab=82.99  E-value=10  Score=28.02  Aligned_cols=110  Identities=15%  Similarity=0.265  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCC-CCccc-------cccCccchHHHHHH--------
Q 027804           38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFWA-------ELLGIGDFYYELGV--------  101 (218)
Q Consensus        38 QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~-k~~ws-------~~lG~gdFyyeLaV--------  101 (218)
                      ++..++.....|-..+.+.|..+     .|..++.++|+.|-... ...|.       ..+...+|..-+..        
T Consensus        26 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~  100 (169)
T 3qrx_A           26 QKQEIREAFDLFDTDGSGTIDAK-----ELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSR  100 (169)
T ss_dssp             HHHHHHHHHHHHCTTCCSEECHH-----HHHHHHHHTSCCCCHHHHHHHHHHHCSSSSSSEEHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCcCcHH-----HHHHHHHHcCCCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHhcccCcH
Confidence            34555666666666666666653     56677777887654100 00110       01112344333321        


Q ss_pred             -HHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804          102 -QIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus       102 -qIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                       .+.++...--..+-|.|+.+|+...+... +   ..+|++++...++.+..=|.|
T Consensus       101 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~-g---~~~~~~~~~~~~~~~D~~~dg  152 (169)
T 3qrx_A          101 EEILKAFRLFDDDNSGTITIKDLRRVAKEL-G---ENLTEEELQEMIAEADRNDDN  152 (169)
T ss_dssp             HHHHHHHHHHCTTCSSSBCHHHHHHHHHHT-T---CCCCHHHHHHHHHHHCCSSSS
T ss_pred             HHHHHHHHHhCCCCCCcCCHHHHHHHHHHc-C---CCCCHHHHHHHHHHhCCCCCC
Confidence             23333333333456888999988887763 2   358888888877776554444

>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...

Probab=82.70  E-value=10  Score=27.65  Aligned_cols=110  Identities=17%  Similarity=0.353  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCC-CCcc-------ccccCccchHHHHHH--------
Q 027804           38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFW-------AELLGIGDFYYELGV--------  101 (218)
Q Consensus        38 QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~-k~~w-------s~~lG~gdFyyeLaV--------  101 (218)
                      ++..++.....|-.++.+.|..+     .|..++.++|.+|-... ...+       ...+...+|..-+..        
T Consensus         8 ~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~   82 (148)
T 1exr_A            8 QIAEFKEAFALFDKDGDGTITTK-----ELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSE   82 (148)
T ss_dssp             HHHHHHHHHHHHCTTCSSEECHH-----HHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCcCcHH-----HHHHHHHHcCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhcccCCCcH
Confidence            44556666666777777777643     56677777887764100 0000       001122344332221        


Q ss_pred             -HHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804          102 -QIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus       102 -qIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                       .+.++...-=..+.|.|+.+|+...+... |   ..+|++++...++.+..=|.|
T Consensus        83 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g---~~~~~~~~~~~~~~~d~d~dg  134 (148)
T 1exr_A           83 EELIEAFKVFDRDGNGLISAAELRHVMTNL-G---EKLTDDEVDEMIREADIDGDG  134 (148)
T ss_dssp             HHHHHHHHHHSTTCSSCBCHHHHHHHHHHT-T---CCCCHHHHHHHHHHHCSSSSS
T ss_pred             HHHHHHHHHhCCCCCCcCCHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCCCCCC
Confidence             22233332223345888888888877653 2   257888888777766544444

>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...

Probab=82.56  E-value=12  Score=27.27  Aligned_cols=111  Identities=18%  Similarity=0.254  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHH--HhhccccCChhHHHHHHHHHHhcCCCCCCCC----CCcc---ccccCccchHHHHHH------
Q 027804           37 EQLATFRSQLEDFAR--KHKNDIRKNPTFRSQFHEMCAKVGVDPLASN----KGFW---AELLGIGDFYYELGV------  101 (218)
Q Consensus        37 ~QL~~F~~~L~~FA~--kH~~eI~~dP~FR~~F~~MC~siGVDPLas~----k~~w---s~~lG~gdFyyeLaV------  101 (218)
                      .|+..++.....|-.  .+.+.|..+     .|..++.++|..|-...    ..+-   ...+...+|..-+..      
T Consensus         6 ~~~~~l~~~F~~~D~~~d~~G~i~~~-----el~~~l~~~g~~~~~~~~~~l~~~D~~~~g~i~~~eF~~~~~~~~~~~~   80 (156)
T 1wdc_C            6 DEIDDLKDVFELFDFWDGRDGAVDAF-----KLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQ   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCEEGG-----GHHHHHHHTTCCCCHHHHHHTTCCSSTTSCEECHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHHHccCCCCCCCCcHH-----HHHHHHHHcCCCCCHHHHHHHHhhCCCCCCeeeHHHHHHHHHHHhhccC
Confidence            345667777778888  788888765     46677788888764110    0110   001122333322221      


Q ss_pred             ---HHHHHhhhccccC-CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhh--ccccCCc
Q 027804          102 ---QIVEICLATRPHN-GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISK--LKVLGNG  156 (218)
Q Consensus       102 ---qIvEvC~~tr~~N-GGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~--L~~LG~G  156 (218)
                         +-+.-+-..-+.| -|.|+.+|+...+... |   ..+|++++...++.  +.+=|.|
T Consensus        81 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~-g---~~~~~~~~~~~~~~~~~D~d~dg  137 (156)
T 1wdc_C           81 GTFADYMEAFKTFDREGQGFISGAELRHVLTAL-G---ERLSDEDVDEIIKLTDLQEDLEG  137 (156)
T ss_dssp             CCHHHHHHHHHTTCSSSSSEEEHHHHHHHHHHS-S---SCCCHHHHHHHHHHHTCCCCTTS
T ss_pred             ChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHc-C---CCCCHHHHHHHHHHhCCCCCCCC
Confidence               1222233333444 4899999998888764 2   25888888888887  6554555

>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}

Probab=82.08  E-value=2.8  Score=30.25  Aligned_cols=111  Identities=17%  Similarity=0.322  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCC-CCccc---cccCccchHHHHHH--------HHH
Q 027804           37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFWA---ELLGIGDFYYELGV--------QIV  104 (218)
Q Consensus        37 ~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~-k~~ws---~~lG~gdFyyeLaV--------qIv  104 (218)
                      .|+..++.....|-..+.+.|..+     .|..++.++|.+|-... ...+.   ..+...+|..-+..        +-+
T Consensus         4 ~~~~~l~~~F~~~D~d~~G~i~~~-----el~~~l~~~g~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~l   78 (143)
T 3j04_B            4 SQIQEFKEAFNMIDQNRDGFIDKE-----DLHDMLASMGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVI   78 (143)
T ss_dssp             HHHHHHHHHHTTTCSSCTTCCCHH-----HHHHHHHHTSCCCCHHHHHTTTTTSSSCCCHHHHHHHHHHTTTSSCCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCcCHH-----HHHHHHHHhCCCCCHHHHHHHHHhCCCCcCHHHHHHHHHHHhccCCcHHHH
Confidence            355666666666666667777644     57788888998764200 01111   11222344333332        112


Q ss_pred             HHhhhcccc-CCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804          105 EICLATRPH-NGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus       105 EvC~~tr~~-NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                      .-+-..-+. +-|.|+.+|+...+... |   ..+|++++...++.+.+=|.|
T Consensus        79 ~~~F~~~D~d~~G~I~~~El~~~l~~~-g---~~~~~~~~~~~~~~~D~d~dg  127 (143)
T 3j04_B           79 RNAFACFDEEASGFIHEDHLRELLTTM-G---DRFTDEEVDEMYREAPIDKKG  127 (143)
T ss_dssp             HHHHTTSCSSSCCCCCTTTHHHHHHTS-S---SCCCHHHHHHHHHHTTCCSSS
T ss_pred             HHHHHHHCCCCCCeEcHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCCCCCC
Confidence            222333333 34778888887777653 2   247777777777766544444

>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A

Probab=81.07  E-value=13  Score=26.53  Aligned_cols=109  Identities=17%  Similarity=0.347  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCC-CCccc-------cccCccchHHHHH---------
Q 027804           38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFWA-------ELLGIGDFYYELG---------  100 (218)
Q Consensus        38 QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~-k~~ws-------~~lG~gdFyyeLa---------  100 (218)
                      ++..++.....|-..+.+.|..+     .|+.++.++|..|-... ...|.       ..+...+|..-+.         
T Consensus         9 ~~~~l~~~F~~~D~~~~G~i~~~-----e~~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~   83 (147)
T 4ds7_A            9 QIAEFKEAFALFDKDNSGSISAS-----ELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSE   83 (147)
T ss_dssp             HHHHHHHHHHHHCTTCSSEEEHH-----HHHHHHHHTTCCCCHHHHHHHHHHHCTTSSSEEEHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCcCHH-----HHHHHHHHhCCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHhccCCCcH
Confidence            45556666666666666667643     56677777887653100 00111       0111234433332         


Q ss_pred             HHHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804          101 VQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus       101 VqIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                      ..+.++...--..+.|.|+.+|+...+... +   ..+|++++...++.+. =|.|
T Consensus        84 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~-~---~~~~~~~~~~~~~~~d-~~dg  134 (147)
T 4ds7_A           84 QELLEAFKVFDKNGDGLISAAELKHVLTSI-G---EKLTDAEVDEMLREVS-DGSG  134 (147)
T ss_dssp             HHHHHHHHHHCTTCSSEECHHHHHHHHHHT-T---CCCCHHHHHHHHHHHS-SSCS
T ss_pred             HHHHHHHHHhCCCCCCeECHHHHHHHHHHc-C---CCCCHHHHHHHHHHhc-CCCC
Confidence            122333333323345889999998888753 2   3588888888777775 3444

>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...

Probab=80.54  E-value=7.8  Score=28.26  Aligned_cols=110  Identities=18%  Similarity=0.350  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCC-CCccc-------cccCccchHHHHHH--------
Q 027804           38 QLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFWA-------ELLGIGDFYYELGV--------  101 (218)
Q Consensus        38 QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~-k~~ws-------~~lG~gdFyyeLaV--------  101 (218)
                      ++..++.....|-.++.+.|..+     .|..++.++|..|-... ...|.       ..+...+|..-+..        
T Consensus        18 ~~~~l~~~F~~~D~d~~G~i~~~-----e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~   92 (162)
T 1top_A           18 MIAEFKAAFDMFDADGGGDISTK-----ELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKG   92 (162)
T ss_dssp             HHHHHHHHHHTTTCSCSSEEEGG-----GHHHHHHHTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCcCCHH-----HHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCcEeHHHHHHHHHHHhcccccc
Confidence            34555666666777777777654     46677777887654100 00111       01122344333221        


Q ss_pred             ---HHHHHhhhccc-cCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804          102 ---QIVEICLATRP-HNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus       102 ---qIvEvC~~tr~-~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                         ..+.-+...-+ .+-|.|+.+|+...+... |   ..+|++++...++.+..=|+|
T Consensus        93 ~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~~-g---~~~~~~~~~~~~~~~d~~~dg  147 (162)
T 1top_A           93 KSEEELANCFRIFDKNADGFIDIEELGEILRAT-G---EHVTEEDIEDLMKDSDKNNDG  147 (162)
T ss_dssp             HHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHTT-T---CCCCHHHHHHHHHHHCTTCSS
T ss_pred             ccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-C---CCCCHHHHHHHHHHhCCCCCC
Confidence               11222233333 334777777777776653 2   246777776666665443333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1u5ta1	145	a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8	1e-72

>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 145

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar sorting protein SNF8
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  214 bits (548), Expect = 1e-72
 Identities = 51/152 (33%), Positives = 92/152 (60%), Gaps = 7/152 (4%)

Query: 23  LGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN 82
           + + + + ++  +++QL  F+ +L +FA+KH ++++ +P FRS+F  MC+ +G+DPL+  
Sbjct: 1   VNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLF 60

Query: 83  KGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDD 142
                 L  + DFYYE+ ++++EIC  T+  NGG+I+ QEL  +  ++       V  DD
Sbjct: 61  DR-DKHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLN-----VGLDD 114

Query: 143 CLRAISKLKVLGNGYEVISVGKKKLVRSVPTE 174
             ++I  LK L   +E+  +  KK +RSVP E
Sbjct: 115 LEKSIDMLKSLE-CFEIFQIRGKKFLRSVPNE 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1u5ta1	145	Vacuolar sorting protein SNF8 {Baker's yeast (Sacc	100.0
d1u5tb1	94	Vacuolar protein sorting-associated protein VPS36	99.29
d1t6sa1	85	Segregation and condensation protein B, ScpB {Chlo	92.8
d1u5ta2	68	Vacuolar sorting protein SNF8 {Baker's yeast (Sacc	92.65
d1wdcc_	152	Myosin Regulatory Chain {Bay scallop (Aequipecten	92.24
d1wdcb_	142	Myosin Essential Chain {Bay scallop (Aequipecten i	87.09
d1lkja_	146	Calmodulin {Baker's yeast (Saccharomyces cerevisia	86.53
d2mysb_	145	Myosin Essential Chain {Chicken (Gallus gallus) [T	85.55
d1ggwa_	140	Cdc4p {Fission yeast (Schizosaccharomyces pombe) [	84.3
d2obha1	141	Calmodulin {Human (Homo sapiens) [TaxId: 9606]}	81.36

>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar sorting protein SNF8
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-65  Score=416.99  Aligned_cols=145  Identities=35%  Similarity=0.677  Sum_probs=138.4

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCCCCccccccCccchHHHHHHH
Q 027804           23 LGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQ  102 (218)
Q Consensus        23 ~g~~l~~~~~~~L~~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~k~~ws~~lG~gdFyyeLaVq  102 (218)
                      +|.++.++|+++|++||++||++|++||++|++||++||+||++|++||++||||||+|+++ |++++|+||||||||||
T Consensus         1 l~~~l~e~q~~ql~~QL~vF~~~L~~FA~kH~~eI~~np~FR~~F~~MC~~iGVDPLas~~~-~~~~lg~gDFYyEL~Vq   79 (145)
T d1u5ta1           1 VNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLFDR-DKHLFTVNDFYYEVCLK   79 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHHHHTTS-SGGGTTHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHhCCChhhcCCC-ccccccccchHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999988 55799999999999999


Q ss_pred             HHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCceEEEEECCEEEEEecCCC
Q 027804          103 IVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTE  174 (218)
Q Consensus       103 IvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~Gf~vi~ig~k~~vrSvP~E  174 (218)
                      |||||++||++|||||+++||++++.+++     .||+|||+|||++|++|| ||+|++||||+||||||.|
T Consensus        80 IvEvC~~tr~~NGGli~l~el~~~~~~~~-----~is~dDi~rAi~~L~~Lg-G~~v~~iggk~~v~SVP~E  145 (145)
T d1u5ta1          80 VIEICRQTKDMNGGVISFQELEKVHFRKL-----NVGLDDLEKSIDMLKSLE-CFEIFQIRGKKFLRSVPNE  145 (145)
T ss_dssp             HHHHHHHHTTTSSSCEEHHHHHHTTTTTT-----TCCHHHHHHHHHHHTTTC-CCCEEEETTEEEECCSSSC
T ss_pred             HHHHHHHhhhcCCCEeEHHHHHHHHHhhc-----CCCHHHHHHHHHhhcccC-CcEEEEECCEEEEEeCCCC
Confidence            99999999999999999999998877754     499999999999999996 9999999999999999987

>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar protein sorting-associated protein VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=5.7e-12  Score=94.23  Aligned_cols=76  Identities=20%  Similarity=0.272  Sum_probs=65.4

Q ss_pred             cchHHHHHHHHHHHhhhccccCCC-----cccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCC-ceEEEEECCEE
Q 027804           93 GDFYYELGVQIVEICLATRPHNGG-----LINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGN-GYEVISVGKKK  166 (218)
Q Consensus        93 gdFyyeLaVqIvEvC~~tr~~NGG-----li~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~-Gf~vi~ig~k~  166 (218)
                      +-||-|||.||.|+|....+..||     ||+|.||++++||+|+.....|||+|+++||+.++.|+- .+.+-++++.-
T Consensus        10 ~lyh~ELArqlae~l~~~~k~~~g~~~~~mItL~Dly~~~NRaR~~G~eLiSP~D~~~Ac~~~e~l~L~p~~Lr~f~sgv   89 (94)
T d1u5tb1          10 ELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKVNKRI   89 (94)
T ss_dssp             TTHHHHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSSCCCCHHHHHHHHTTTGGGTCCSCEEEEETTTE
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhCCCCCcceeeHHHHHHHHHHhhhcCCcccCHHHHHHHHHHHHhCCCCceEEEEecCce
Confidence            689999999999999988776666     999999999999999333339999999999999999995 89999886544


Q ss_pred             EE
Q 027804          167 LV  168 (218)
Q Consensus       167 ~v  168 (218)
                      +|
T Consensus        90 lv   91 (94)
T d1u5tb1          90 LC   91 (94)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ScpB/YpuH-like
domain: Segregation and condensation protein B, ScpB
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.80  E-value=0.091  Score=36.42  Aligned_cols=61  Identities=15%  Similarity=0.267  Sum_probs=48.3

Q ss_pred             HHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc----ccCCceEEEEECCEEEEEecC
Q 027804          102 QIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK----VLGNGYEVISVGKKKLVRSVP  172 (218)
Q Consensus       102 qIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~----~LG~Gf~vi~ig~k~~vrSvP  172 (218)
                      ++||.++=.-   |.=+++++|.+.+.+       .+|+++|..+++.|+    .-+.||+|+.++|.+-+++-|
T Consensus        10 ~~IEAlLFas---~~Pls~~~L~~~l~~-------~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~~gy~~~tk~   74 (85)
T d1t6sa1          10 RSLEALIFSS---EEPVNLQTLSQITAH-------KFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEP   74 (85)
T ss_dssp             HHHHHHHHHC---SSCBCHHHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECG
T ss_pred             HHHHHHHHhc---CCCCCHHHHHHHHcc-------CCCHHHHHHHHHHHHHHHhcCCCcEEEEEECCEEEEEEhH
Confidence            4556555432   456888998887754       589999999999986    357899999999999999988

>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar sorting protein SNF8
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.65  E-value=0.016  Score=39.75  Aligned_cols=17  Identities=29%  Similarity=0.571  Sum_probs=15.2

Q ss_pred             cchhHHHHHHHHhhccc
Q 027804          175 LNKDHNQILELAQVTSI  191 (218)
Q Consensus       175 Ls~Dq~~vLe~a~~~~~  191 (218)
                      ||+||++|||+|+..|.
T Consensus         1 Ls~Dqt~vLe~a~~~G~   17 (68)
T d1u5ta2           1 LTSDQTKILEICSILGY   17 (68)
T ss_dssp             CCTTHHHHHHTTTTTSC
T ss_pred             CCchHHHHHHHHHHcCc
Confidence            79999999999998764

>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Regulatory Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=92.24  E-value=0.5  Score=34.29  Aligned_cols=115  Identities=13%  Similarity=0.292  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHH--HhhccccCChhHHHHHHHHHHhcCCCCCCCCCCccccccCccchHHHHHHHHHHHhhhccccC
Q 027804           37 EQLATFRSQLEDFAR--KHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHN  114 (218)
Q Consensus        37 ~QL~~F~~~L~~FA~--kH~~eI~~dP~FR~~F~~MC~siGVDPLas~k~~ws~~lG~gdFyyeLaVqIvEvC~~tr~~N  114 (218)
                      .|+..+|+....|-.  .+.+.|..+     +|+.++.++|..|-  .                  .++-+++ ..-..+
T Consensus         4 eqi~~l~~~F~~fD~~~~~dG~I~~~-----el~~~l~~lG~~~t--~------------------~e~~~~~-~~~~~~   57 (152)
T d1wdcc_           4 DEIDDLKDVFELFDFWDGRDGAVDAF-----KLGDVCRCLGINPR--N------------------EDVFAVG-GTHKMG   57 (152)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSCEEGG-----GHHHHHHHTTCCCC--H------------------HHHHHTT-CCSSTT
T ss_pred             HHHHHHHHHHHHHCcCCCCCCeECHH-----HHHHHHHHhccCcc--H------------------hhhhhhh-hhhccc
Confidence            466777888788754  344566654     35578888998872  1                  0111222 223344


Q ss_pred             CCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCceEEEEECC-EEEEEecCCCcchhHHH
Q 027804          115 GGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK-KKLVRSVPTELNKDHNQ  181 (218)
Q Consensus       115 GGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~Gf~vi~ig~-k~~vrSvP~ELs~Dq~~  181 (218)
                      .|.|+.+|.+..+.+.....  .-+.++|.+|.+.+-.=|+|+  |++.. +..+++....+|.++..
T Consensus        58 ~~~i~~~eFl~~~~~~~~~~--~~~~~~l~~aF~~~D~~~~G~--I~~~el~~~l~~~g~~ls~~e~~  121 (152)
T d1wdcc_          58 EKSLPFEEFLPAYEGLMDCE--QGTFADYMEAFKTFDREGQGF--ISGAELRHVLTALGERLSDEDVD  121 (152)
T ss_dssp             SCEECHHHHHHHHHHHTTSC--CCCHHHHHHHHHTTCSSSSSE--EEHHHHHHHHHHSSSCCCHHHHH
T ss_pred             cccccccccccccccccccc--hhHHHhhhhhhhccccccCcc--chHHHHHHHHHHcCCCCCHHHHH
Confidence            57788888887776654322  467788888888887777775  33332 44445555567766543

>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=87.09  E-value=1.3  Score=31.64  Aligned_cols=39  Identities=10%  Similarity=0.266  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCC
Q 027804           36 KEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPL   79 (218)
Q Consensus        36 ~~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPL   79 (218)
                      .+|++.|++....|-..+.+.|..+     .|..+..++|.+|-
T Consensus         3 ~~qi~e~~~~F~~~D~d~~G~I~~~-----el~~~l~~lg~~~~   41 (142)
T d1wdcb_           3 QKQIQEMKEAFSMIDVDRDGFVSKE-----DIKAISEQLGRAPD   41 (142)
T ss_dssp             HHHHHHHHHHHHHHCTTCSSSCCHH-----HHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCCcCChH-----HHHHHHHHhhcCCC
Confidence            3688888999999988888888765     46788888999874

>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.53  E-value=1.8  Score=30.59  Aligned_cols=110  Identities=17%  Similarity=0.312  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCC--CCccc---cccC---ccchHHHH---------
Q 027804           37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN--KGFWA---ELLG---IGDFYYEL---------   99 (218)
Q Consensus        37 ~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~--k~~ws---~~lG---~gdFyyeL---------   99 (218)
                      .|++.|++....|-..+.+.|.-+     .|..++...|.+|....  .-+|.   +.-+   ..+|...+         
T Consensus         7 ~~i~~l~~~F~~~D~d~~G~i~~~-----e~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (146)
T d1lkja_           7 EQIAEFKEAFALFDKDNNGSISSS-----ELATVMRSLGLSPSEAEVNDLMNEIDVDGNHQIEFSEFLALMSRQLKSNDS   81 (146)
T ss_dssp             HHHHHHHHHHHHHCCSSSSEEEHH-----HHHHHHHHHTCCCCHHHHHHHHHHHCSSSCCEEEHHHHHHHHHHHTCCCCH
T ss_pred             HHHHHHHHHHHHHCCCCCCcEeHH-----HHHHHHHhcCCCCCHHHHHHHHHHhccCCcccccHHHHHHHHHHhhccccH
Confidence            456667888888877777777653     56788888898876210  00000   0001   12222222         


Q ss_pred             HHHHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804          100 GVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus       100 aVqIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                      ..++.+++..-=..+-|.|+++|+...+....    ..++++++..-++... =|+|
T Consensus        82 ~~~~~~aF~~~D~d~~G~I~~~el~~~l~~~g----~~~~~~~~~~~~~~~d-d~dG  133 (146)
T d1lkja_          82 EQELLEAFKVFDKNGDGLISAAELKHVLTSIG----EKLTDAEVDDMLREVS-DGSG  133 (146)
T ss_dssp             HHHHHHHHHHHCSSSSCEEEHHHHHHHHHHHT----CSCCHHHHHHHHHHHC-CSSS
T ss_pred             HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcC----CcccHHHHHHHHHhcc-CCCC
Confidence            23566777766667779999999988876642    3589999888777765 3444

>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Myosin Essential Chain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=85.55  E-value=2  Score=30.51  Aligned_cols=111  Identities=14%  Similarity=0.175  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCCC--Ccc---ccccCccchHHHHH---------HH
Q 027804           37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNK--GFW---AELLGIGDFYYELG---------VQ  102 (218)
Q Consensus        37 ~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~k--~~w---s~~lG~gdFyyeLa---------Vq  102 (218)
                      +|++.+++....|-..+.+.|..+     .|..+..++|..|....-  .+-   ...+...+|..-+.         ..
T Consensus         4 ~qi~el~e~F~~~D~~~~G~I~~~-----e~~~~l~~lg~~~~~~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~~~~~   78 (145)
T d2mysb_           4 TEIEDFKEAFTVIDQNADGIIDKD-----DLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKGADPEDV   78 (145)
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHH-----HHHHHHHHhCCCcchHHHHHHHHHhccCceeechhhhhhhhcccccchHHH
Confidence            567778888888888888877654     567777888877652100  000   00011122222221         23


Q ss_pred             HHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804          103 IVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus       103 IvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                      |.++...--..+-|.|++.|+...+... |   ..+|++++...++.+.+=++|
T Consensus        79 l~~aF~~fD~~~~g~I~~~el~~~l~~~-g---~~ls~~e~~~~~~~~d~d~dg  128 (145)
T d2mysb_          79 IMGAFKVLDPDGKGSIKKSFLEELLTTG-G---GRFTPEEIKNMWAAFPPDVAG  128 (145)
T ss_pred             HHHHHHhhhhcccchhhHHHHHHHHHHc-C---CCCCHHHHHHHHHHhCCCCCC
Confidence            4444444444566889999999887653 3   358999998887776553344

>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Cdc4p
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=84.30  E-value=0.69  Score=33.15  Aligned_cols=103  Identities=17%  Similarity=0.254  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCC-CCccccccC---ccchHHHHH-----------HHHH
Q 027804           40 ATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFWAELLG---IGDFYYELG-----------VQIV  104 (218)
Q Consensus        40 ~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~-k~~ws~~lG---~gdFyyeLa-----------VqIv  104 (218)
                      +.||++...|-..+.+.|..+     +|+.++.++|.+|-... ..++.+.=|   ..+|..-++           ..+.
T Consensus         5 ~~fke~F~~~D~d~dG~I~~~-----el~~~l~~lg~~~t~~ei~~~~~~~~~~i~~~eF~~~~~~~~~~~~~~~~~~l~   79 (140)
T d1ggwa_           5 SPYKQAFSLFDRHGTGRIPKT-----SIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFV   79 (140)
T ss_dssp             TTTHHHHHHTCSSSSSEECHH-----HHHHHHHHTSCCCCHHHHHHHHTTSCSSEEHHHHHHHHCTTSSSSSSCCHHHHH
T ss_pred             HHHHHHHHHHCCCCCCeECHH-----HHHHHHHHHHhhhHHHhhhhhhccccccccchhhhhhhhhhhhcchhhHHHHHH
Confidence            568888888878888888764     46788888998875210 001111001   112211111           1244


Q ss_pred             HHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhcc
Q 027804          105 EICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLK  151 (218)
Q Consensus       105 EvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~  151 (218)
                      +++..-=..+-|.|+..|+...+.+..    ..+|++++..-++.+.
T Consensus        80 ~aF~~~D~d~~G~I~~~el~~~l~~~g----~~lt~~e~~~l~~~~d  122 (140)
T d1ggwa_          80 KGFQVFDKDATGMIGVGELRYVLTSLG----EKLSNEEMDELLKGVP  122 (140)
T ss_dssp             HHHHTTCSSCSSCCCHHHHHHHHHHHH----SCSCHHHHHHHHHHTT
T ss_pred             HHHHHHhccCCCcchHHHHHHHHHHcC----CCCCHHHHHHHHHhhC
Confidence            555544444557777777777665532    2467777776665543

>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: Calmodulin-like
domain: Calmodulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.36  E-value=4.8  Score=27.64  Aligned_cols=111  Identities=17%  Similarity=0.288  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHHHhhccccCChhHHHHHHHHHHhcCCCCCCCC-CCcc-------ccccCccchHHHHH--------
Q 027804           37 EQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN-KGFW-------AELLGIGDFYYELG--------  100 (218)
Q Consensus        37 ~QL~~F~~~L~~FA~kH~~eI~~dP~FR~~F~~MC~siGVDPLas~-k~~w-------s~~lG~gdFyyeLa--------  100 (218)
                      +|-+.+++....|=+.+.+.|.-+.     |...+.++|..|.-.. ...+       ...+...+|..-+.        
T Consensus         3 ~~~~elk~~F~~~D~~~~G~Is~~e-----~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~   77 (141)
T d2obha1           3 EQKQEIREAFDLFDADGTGTIDVKE-----LKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDT   77 (141)
T ss_dssp             HHHHHHHHHHHTTCTTCCSEEEGGG-----HHHHHHHTTCCCCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCeEeHHH-----HHHHHHhcCCchhHHHHHHHHHhhccCCCCeechHHHHHHHHHHHhhhcc
Confidence            3555666666666666666676653     5566667776655100 0000       00011123333332        


Q ss_pred             -HHHHHHhhhccccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCc
Q 027804          101 -VQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNG  156 (218)
Q Consensus       101 -VqIvEvC~~tr~~NGGli~l~el~~~v~k~rg~~~~~IS~dDI~rAi~~L~~LG~G  156 (218)
                       .++-++...--..+.|.|+..|+...+.+. |   ..+|++++...++.+.+=+.|
T Consensus        78 ~~~l~~~f~~~d~~~~G~i~~~el~~~l~~~-g---~~l~~~e~~~l~~~~D~d~dG  130 (141)
T d2obha1          78 KEEILKAFKLFDDDETGKISFKNLKRVAKEL-G---ENLTDEELQEMIDEADRDGDG  130 (141)
T ss_dssp             HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHT-T---CCCCHHHHHHHHHHHCTTSSS
T ss_pred             HHHHHHHHHHhcccCCCCccHHHHHHHHHHh-C---CCCCHHHHHHHHHHHCCCCCC
Confidence             335566666666788999999999888763 2   369999999999887654444