Citrus Sinensis ID: 027825

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MGTELKTNNKAGSRADHHTEGEGFKPVKENIFIVRDRMEREKEGKQAKYEKLIRDLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENGLVHCPACSS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHccccccccEEEEccEEEccHHHHHcHHHcccccccHHHHHHHcccccccccccccccEEEccccccccEEEEccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHccccccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHccccccccEEEEcccEcccHHHHHHHHHccHHHHHHcccccHcccccccccccccEEEEEcccccccEEEEEccccEEEcccccccccEEcccccc
Coil and Loop (DISEMBL)
mgtelktnnkagsradhhtegegfkpvkeNIFIVRDRMEREKEGKQAKYEKLIRDLLsdfpekcppggsdgvVIYTTSlrgvrrtyedcnrvrstfevnrvvtderdvslHGQFLNELKDllggetvtvprvfikgryvggvdeltelnesgklGRMLRSARVEMGigrqacegcggarfvpcfdcggsckvvlangdkqrcgvcnenglvhcpacss
Flexible Loop (DISEMBL)
mgtelktnnkagsradhhtegegfkpvkeniFIVRDRmerekegkqakYEKLIRDLLSDFpekcppggsdgvVIYTTslrgvrrtyedcnrvrstfevnrvvtderdvsLHGQFLNelkdllggetvTVPRVFIKgryvggvdeltelnesgklgRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGDKQrcgvcnenglvhcpacss
Low Complexity Region (SEG)
MGTELKTNNKAGSRADHHTEGEGFKPVKENIFIVRDRMEREKEGKQAKYEKLIRDLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENGLVHCPACSS
Disordered region (IsUnstruct)
*****************************NIFIV****************KLIRDLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENGLVHCP****
Disordered Region (DISOPRED)
***********************************************************************VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNE*********VTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENGLVHCPACSS
Disordered Region (DISEMBL)
*******************EGEGFKPVKENIFIVRDRM********AKYEKLIRDLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENGLVHCPACSS
Disordered Region (DISPRO)
******************************************************DLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENGLVHCPACSS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGTELKTNNKAGSRADHHTEGEGFKPVKENIFIVxxxxxxxxxxxxxxxxxxxxxLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENGLVHCPACSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q9FLE8	390	Uncharacterized protein A	no	no	0.729	0.407	0.422	3e-31
Q9LH89	428	Uncharacterized protein A	no	no	0.678	0.345	0.418	2e-28
Q50H32	290	Glutaredoxin domain-conta	yes	no	0.669	0.503	0.393	1e-21
A8MXD5	290	Glutaredoxin domain-conta	yes	no	0.669	0.503	0.387	2e-21
Q9W4S1	582	Glutaredoxin domain-conta	yes	no	0.651	0.243	0.337	2e-19
Q9VNL4	454	Glutaredoxin domain-conta	no	no	0.655	0.314	0.326	1e-17

>sp|Q9FLE8|Y5986_ARATH Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 108/180 (60%), Gaps = 21/180 (11%)

Query: 55  DLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQF 114
           D++S F  K    G + VV+Y TSLRG+R+TYEDC  +R   +   +  DERDVS+H  F
Sbjct: 212 DIVSRFKRKTL--GKERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGF 269

Query: 115 LNELKDLLGGET-----VTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARV----EM 165
            +ELK LL G+      +T+PRVF+  +Y+GGV+E+ +LNE+G+L ++++   +      
Sbjct: 270 KDELKKLLEGKFNNGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSP 329

Query: 166 GIGRQACEGCGGARFVPCFDCGGSCKVVLANGDK---------QRCGVCNENGLVHCPAC 216
           G G + CE CG  RFVPC  C GSCK+     ++         QRC  CNENGL+ C  C
Sbjct: 330 GFGNE-CEACGDVRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVC 388

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LH89|Y3885_ARATH Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 99/179 (55%), Gaps = 31/179 (17%)

Query: 68  GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG---- 123
           G + V++Y TSLRG+R+TYE+   VR   +   +  DERDVS+H  F +ELK+LLG    
Sbjct: 249 GKERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFN 308

Query: 124 -GETVTVPRVFIKGRYVGGVDELTELNESGKLGRML----RSARVEMGIGRQACEGCGGA 178
            G  +T+PRVF+  +Y+GG +E+ +LNE GKL ++L    R    + G G + CE CG  
Sbjct: 309 KGVGITLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCERVEENQNGNGLE-CEACGDV 367

Query: 179 RFVPCFDCGGSCKVVLANGDK---------------------QRCGVCNENGLVHCPAC 216
           RFVPC  C GSCKV     D                      Q C  CNENGL+ CP C
Sbjct: 368 RFVPCETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCPVC 426

Arabidopsis thaliana (taxid: 3702)

>sp|Q50H32|GRCR1_MOUSE Glutaredoxin domain-containing cysteine-rich protein 1 OS=Mus musculus GN=Grxcr1 PE=1 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 86/155 (55%), Gaps = 9/155 (5%)

Query: 70  DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG--GETV 127
           D VVIYTT LR VR T+E C  VR  F+ +RV  +E++++L+G +  EL +      E  
Sbjct: 137 DRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSEAP 196

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCG 187
           ++P VFI G Y+GG +++  +NESG+L  +L   ++E       C  CGG  F+PC  C 
Sbjct: 197 SLPVVFIDGHYLGGAEKILSMNESGELQDLL--TKIERVQHPHECPSCGGFGFLPCSVCH 254

Query: 188 GSCKVVLAN-----GDKQRCGVCNENGLVHCPACS 217
           GS   V  N         +C  CNENGL  C  C+
Sbjct: 255 GSKMSVFRNCFTDAFKALKCTACNENGLQRCKNCT 289

May play a role in actin filament architecture in developing stereocilia of sensory cells.

Mus musculus (taxid: 10090)

>sp|A8MXD5|GRCR1_HUMAN Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens GN=GRXCR1 PE=1 SV=1

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 9/155 (5%)

Query: 70  DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG--GETV 127
           D VVIYTT LR VR T+E C  VR  F+ +RV  +E++++L+G++  EL +      E  
Sbjct: 137 DRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERCRRVSEAP 196

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCG 187
           ++P VFI G Y+GG +++  +NESG+L  +L   ++E       C  CGG  F+PC  C 
Sbjct: 197 SLPVVFIDGHYLGGAEKILSMNESGELQDIL--TKIERVQHPHECPSCGGFGFLPCSVCH 254

Query: 188 GSCKVVLAN-----GDKQRCGVCNENGLVHCPACS 217
           GS   +  N         +C  CNENGL  C  C+
Sbjct: 255 GSKMSMFRNCFTDSFKALKCTACNENGLQRCKNCA 289

May play a role in actin filament architecture in developing stereocilia of sensory cells.

Homo sapiens (taxid: 9606)

>sp|Q9W4S1|GRCR2_DROME Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster GN=CG12206 PE=2 SV=2

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 9/151 (5%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           VV+YTTS+  +R TY  C  V+       +  +ERD+ +  ++  E+++ +  ET+ VP+
Sbjct: 435 VVLYTTSMGIIRDTYAKCANVKKILRTLLIKFEERDIFMSVEYQQEMRERMQDETIRVPQ 494

Query: 132 VFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQ-ACEGCGGARFVPCFDCGGSC 190
           +F++G+ +G  + +  LNESG+L ++LR  +    I     C+ CGG R +PC  C GS 
Sbjct: 495 LFVEGQLIGDANIVERLNESGELRQLLRPYK---SIATAYTCQTCGGYRMLPCPACNGSK 551

Query: 191 KVVLANGDKQ-----RCGVCNENGLVHCPAC 216
           K +  N         +C  C+E GL+ CP C
Sbjct: 552 KSMHRNHFTAEFVALKCMNCDEVGLIKCPNC 582

Drosophila melanogaster (taxid: 7227)

>sp|Q9VNL4|GRCR1_DROME Glutaredoxin domain-containing cysteine-rich protein CG31559 OS=Drosophila melanogaster GN=CG31559 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 7/150 (4%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           VV+YTTS+  +R TY  C  V+       V  +ERDV +  ++  E++  +    V VP+
Sbjct: 307 VVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMSVEYQAEMRQRMQSGQVRVPQ 366

Query: 132 VFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCK 191
           ++++G+++G  + +  +NESG+L ++L+  +         C+ CGG R +PC  C GS K
Sbjct: 367 LYVEGQHIGDAETVERMNESGELRQLLKPYKSMAST--YTCQTCGGYRLLPCPSCNGSKK 424

Query: 192 VVLANGDKQ-----RCGVCNENGLVHCPAC 216
            V  N         +C  C+E GLV C  C
Sbjct: 425 SVHRNHFTAEFVALKCMNCDEVGLVKCHNC 454

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
255555621	376	electron transporter, putative [Ricinus	0.889	0.515	0.722	1e-75
225426284	371	PREDICTED: uncharacterized protein LOC10	0.889	0.522	0.671	1e-74
356513273	337	PREDICTED: uncharacterized protein LOC10	0.862	0.557	0.682	5e-72
224072222	364	hypothetical protein POPTRDRAFT_554508 [	0.940	0.563	0.655	6e-70
147820799	372	hypothetical protein VITISV_032100 [Viti	0.889	0.521	0.666	3e-69
449452408	361	PREDICTED: uncharacterized protein LOC10	0.848	0.512	0.692	4e-67
15217659	368	glutaredoxin-like protein [Arabidopsis t	0.944	0.559	0.563	1e-58
17381052	368	putative peptide transporter protein [Ar	0.944	0.559	0.563	8e-58
297839999	366	glutaredoxin family protein [Arabidopsis	0.880	0.524	0.597	2e-57
168038475	655	predicted protein [Physcomitrella patens	0.729	0.242	0.561	9e-47

>gi|255555621|ref|XP_002518846.1| electron transporter, putative [Ricinus communis] gi|223541833|gb|EEF43379.1| electron transporter, putative [Ricinus communis]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 143/198 (72%), Positives = 167/198 (84%), Gaps = 4/198 (2%)

Query: 21  GEGFKPVKENIFIVRDRMEREKEGKQAKYEKLIR-DLLSDFPEKCPP-GGSDGVVIYTTS 78
           G+  KPVKENIFI+RDR EREKEGK A Y+K+ R D LS++PEK PP GG++ VVIYTTS
Sbjct: 180 GKVIKPVKENIFILRDRQEREKEGKMANYDKMKRLDPLSEYPEKIPPNGGAESVVIYTTS 239

Query: 79  LRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRY 138
           LRGVR+T+EDCNRVRS  E +RVV DERDVSLHG FLNEL++LLG E  +VPRVF+KGRY
Sbjct: 240 LRGVRKTFEDCNRVRSLLEGHRVVFDERDVSLHGDFLNELRELLG-EEASVPRVFVKGRY 298

Query: 139 VGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGD 198
            GGVD + ELNE+G+LGR++  ARVE G+GRQACEGCGGARFVPC DCGGSCK VL +G 
Sbjct: 299 FGGVDNVIELNETGRLGRIMSWARVERGVGRQACEGCGGARFVPCVDCGGSCK-VLVDGV 357

Query: 199 KQRCGVCNENGLVHCPAC 216
           K+RCG CNENGL+ CPAC
Sbjct: 358 KERCGECNENGLMLCPAC 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426284|ref|XP_002266905.1| PREDICTED: uncharacterized protein LOC100247840 [Vitis vinifera]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/198 (67%), Positives = 168/198 (84%), Gaps = 4/198 (2%)

Query: 21  GEGFKPVKENIFIVRDRMEREKEGKQAKYEKLI--RDLLSDFPEKCPPGGSDGVVIYTTS 78
            EG +PVK+N+FI+RDR+ERE+EGK A ++K++  RD LS++PEKCPPGG+D +V+YTTS
Sbjct: 175 SEGMRPVKDNMFILRDRLEREREGKSANFDKMMSRRDPLSEYPEKCPPGGADSLVLYTTS 234

Query: 79  LRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRY 138
           L GVRRTYEDCNR+RS  E +RVV DERDVSLHG+FL EL++LLG E+ +VPR+F+KGRY
Sbjct: 235 LGGVRRTYEDCNRLRSVLESHRVVFDERDVSLHGEFLKELRELLGEES-SVPRLFVKGRY 293

Query: 139 VGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGD 198
           VGGV+E+ ELNE G+LG++L  A+VE G+GRQ CEGCGGARFVPC +CGGSCKV++    
Sbjct: 294 VGGVEEVVELNEWGRLGKLLNCAKVERGVGRQGCEGCGGARFVPCLECGGSCKVMVGE-T 352

Query: 199 KQRCGVCNENGLVHCPAC 216
           K+RC  CNENGLV CPAC
Sbjct: 353 KERCSECNENGLVQCPAC 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513273|ref|XP_003525338.1| PREDICTED: uncharacterized protein LOC100809536 [Glycine max]

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 131/192 (68%), Positives = 159/192 (82%), Gaps = 4/192 (2%)

Query: 27  VKENIFIVRDRMEREKEGKQAKYEKLIRDLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTY 86
           +KEN+FIVRDR+ER+KE K+  +E+L RD LS FPEKCPPGGS+ VV+YTTSL GVR+T+
Sbjct: 150 LKENMFIVRDRLERQKEEKELTFERLRRDPLSAFPEKCPPGGSEKVVLYTTSLGGVRKTF 209

Query: 87  EDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT 146
           EDCNR R   E +RVV DERDVSLHG+FL E+K+L+ GE V +PRVF+KGRYVGG++EL 
Sbjct: 210 EDCNRARDVLEGHRVVFDERDVSLHGEFLREVKELVDGEGVALPRVFVKGRYVGGLEELV 269

Query: 147 ELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCN 206
           ELNE+G+LGR+L + RVE GIGRQ C GCGGARFVPCFDC GSCK++     ++RC  CN
Sbjct: 270 ELNETGRLGRILNATRVERGIGRQTCGGCGGARFVPCFDCAGSCKLL----HRERCPNCN 325

Query: 207 ENGLVHCPACSS 218
           ENGLVHCPAC S
Sbjct: 326 ENGLVHCPACIS 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072222|ref|XP_002303660.1| hypothetical protein POPTRDRAFT_554508 [Populus trichocarpa] gi|222841092|gb|EEE78639.1| hypothetical protein POPTRDRAFT_554508 [Populus trichocarpa]

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 163/212 (76%), Gaps = 7/212 (3%)

Query: 6   KTNNKAGSRADHHTEGEG-FKPVKENIFIVRDRMEREKEGKQAKYEKLIRDLLSDFPEKC 64
           KT ++ G+       G G  + VKENIFIVRDR+ER KEGK  K      D LS F EKC
Sbjct: 158 KTESRVGTEPVTEPSGGGVIRSVKENIFIVRDRLERGKEGKPLKK----FDPLSGFEEKC 213

Query: 65  PPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGG 124
           PPGG+D VV+YTTSLRG+RRT++DC RV++ FE++ VV DERDVSLHG+FLNEL+DL+G 
Sbjct: 214 PPGGADSVVLYTTSLRGIRRTFDDCTRVKTLFELHHVVFDERDVSLHGEFLNELRDLVG- 272

Query: 125 ETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCF 184
           E  +VPRVFIKGRY+GGVDE+ ELNESG+LGRML  ARV    GRQACEGCG ARFVPC 
Sbjct: 273 EGTSVPRVFIKGRYIGGVDEVVELNESGQLGRMLVWARVGRVEGRQACEGCGDARFVPCL 332

Query: 185 DCGGSCKVVLANGDKQRCGVCNENGLVHCPAC 216
           +C GSCK VL +G K+RCG CNENGLV CP C
Sbjct: 333 ECSGSCK-VLIDGAKERCGKCNENGLVRCPTC 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820799|emb|CAN65189.1| hypothetical protein VITISV_032100 [Vitis vinifera]

 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 132/198 (66%), Positives = 166/198 (83%), Gaps = 4/198 (2%)

Query: 21  GEGFKPVKENIFIVRDRMEREKEGKQAKYEKLI--RDLLSDFPEKCPPGGSDGVVIYTTS 78
            EG +PVK+N+FI+RDR+ERE+EGK A ++K++  RD LS++PEKCPPGG+D +V+YTTS
Sbjct: 176 SEGMRPVKDNMFILRDRLEREREGKSANFDKMMSRRDPLSEYPEKCPPGGADSLVLYTTS 235

Query: 79  LRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRY 138
           L GVRRTYEDCNR+RS  E +RVV DERDVSLHG+FL EL++L  GE  +VPR+F+KGRY
Sbjct: 236 LGGVRRTYEDCNRLRSVLESHRVVFDERDVSLHGEFLKELREL-LGEEXSVPRLFVKGRY 294

Query: 139 VGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGD 198
           VGGV+E+ ELNE G+LG++L  A+VE G+GRQ CEGCGGARFVPC +CGGSCKV++    
Sbjct: 295 VGGVEEVVELNEWGRLGKLLNCAKVERGVGRQGCEGCGGARFVPCLECGGSCKVMVGE-T 353

Query: 199 KQRCGVCNENGLVHCPAC 216
           K+RC  CNENGLV CPAC
Sbjct: 354 KERCSECNENGLVQCPAC 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452408|ref|XP_004143951.1| PREDICTED: uncharacterized protein LOC101208965 [Cucumis sativus] gi|449517489|ref|XP_004165778.1| PREDICTED: uncharacterized LOC101208965 [Cucumis sativus]

 Score =  259 bits (663), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 135/195 (69%), Positives = 160/195 (82%), Gaps = 10/195 (5%)

Query: 24  FKPVKENIFIVRDRMEREKEGKQAKYEKLIR-DLLSDFPEKCPPGGSDGVVIYTTSLRGV 82
           FK VKENIF+VRDR ERE+EG     +K +R D LS+FPEKCPPGG++ VV+YTTSLRGV
Sbjct: 174 FKSVKENIFLVRDREEREREG-----QKPVRFDPLSEFPEKCPPGGAETVVLYTTSLRGV 228

Query: 83  RRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGV 142
           RRT+EDCNRV+S  E+ +VV DERDV+LHG+FL ELK+LLG E  TVP++F+KGRY+GG 
Sbjct: 229 RRTFEDCNRVKSVLELQQVVVDERDVALHGEFLKELKELLGDEA-TVPKMFVKGRYIGGA 287

Query: 143 DELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGD-KQR 201
           DE+  LNE GKL R+LR A VE G GRQ CEGCGGARFVPC++CGGSCKV+   GD K+R
Sbjct: 288 DEVVALNEMGKLRRILRRAAVETGAGRQGCEGCGGARFVPCYECGGSCKVI--KGDTKER 345

Query: 202 CGVCNENGLVHCPAC 216
           CG CNENGL HCPAC
Sbjct: 346 CGACNENGLAHCPAC 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217659|ref|NP_176631.1| glutaredoxin-like protein [Arabidopsis thaliana] gi|6633811|gb|AAF19670.1|AC009519_4 F1N19.7 [Arabidopsis thaliana] gi|15810443|gb|AAL07109.1| putative peptide transporter protein [Arabidopsis thaliana] gi|27754251|gb|AAO22579.1| putative peptide transporter protein [Arabidopsis thaliana] gi|332196126|gb|AEE34247.1| glutaredoxin-like protein [Arabidopsis thaliana]

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 124/220 (56%), Positives = 150/220 (68%), Gaps = 14/220 (6%)

Query: 9   NKAGSRADHHTEG-----EGFKPVKENIFIVRDRMEREKEGKQAKYEKLIRDLLSDFPEK 63
           +K    +D  TE       G + VKENIF+ RDR  REKEG   K   +  D L +FPEK
Sbjct: 148 SKLRPESDDRTESTQSSYSGPRSVKENIFVKRDRERREKEGN--KKPVMNWDPLREFPEK 205

Query: 64  CPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG 123
           CPPGG +G+++YTTSL+GVRRTYEDC RVR+  E   VV DERDVSL    L+ELK+LL 
Sbjct: 206 CPPGGGEGLIVYTTSLQGVRRTYEDCMRVRAIMEQQGVVVDERDVSLDAGVLSELKELLQ 265

Query: 124 GE-TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEM--GIGRQACEGCGGARF 180
            E +V  PRVF+KGRY+GG  E+T +NE+GKLGR+LR ARVE     GR  CEGCGGAR+
Sbjct: 266 DEASVAPPRVFVKGRYLGGAAEVTAMNENGKLGRVLRWARVERVGEEGRLTCEGCGGARW 325

Query: 181 VPCFDCGGSCKVVLANGDK----QRCGVCNENGLVHCPAC 216
           +PCF+CGGSCKV      K    +RC  CNENGL+ CP C
Sbjct: 326 LPCFECGGSCKVAAVGAAKGERWERCVKCNENGLIRCPVC 365

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|17381052|gb|AAL36338.1| putative peptide transporter protein [Arabidopsis thaliana]

 Score =  229 bits (583), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 124/220 (56%), Positives = 151/220 (68%), Gaps = 14/220 (6%)

Query: 9   NKAGSRADHHTEG-----EGFKPVKENIFIVRDRMEREKEGKQAKYEKLIRDLLSDFPEK 63
           +K    +D  TE       G + VKENIF+ RDR  REKEG   K   +  D L +FPEK
Sbjct: 148 SKLRPESDDRTESTQSSYSGPRSVKENIFVKRDRERREKEGN--KKPVMNWDPLREFPEK 205

Query: 64  CPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG 123
           CPPGG +G+++YTTSL+GVRRTYEDC RVR+  E   VV DERDVSL    L+ELK+LL 
Sbjct: 206 CPPGGGEGLIVYTTSLQGVRRTYEDCMRVRAIMEQQGVVVDERDVSLDAGVLSELKELLQ 265

Query: 124 GE-TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSAR-VEMG-IGRQACEGCGGARF 180
            E +V  PRVF+KGRY+GG  E+T +NE+GKLGR+LR AR V +G  GR  CEGCGGAR+
Sbjct: 266 DEASVAPPRVFVKGRYLGGAAEVTAMNENGKLGRVLRWARVVRVGEEGRLTCEGCGGARW 325

Query: 181 VPCFDCGGSCKVVLANGDK----QRCGVCNENGLVHCPAC 216
           +PCF+CGGSCKV      K    +RC  CNENGL+ CP C
Sbjct: 326 LPCFECGGSCKVAAVGAAKGERWERCVKCNENGLIRCPVC 365

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839999|ref|XP_002887881.1| glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata] gi|297333722|gb|EFH64140.1| glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/201 (59%), Positives = 142/201 (70%), Gaps = 9/201 (4%)

Query: 23  GFKPVKENIFIVRDRMEREKEGKQAKYEKLIRDLLSDFPEKCPPGGSDGVVIYTTSLRGV 82
           G + VKENIF+ RDR  REKEG   K   +  D L +FPEKCPP G +G+V+YTTSL+GV
Sbjct: 165 GPRSVKENIFVKRDRERREKEGN--KKPVMNWDPLREFPEKCPPRGGEGLVVYTTSLQGV 222

Query: 83  RRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGE-TVTVPRVFIKGRYVGG 141
           RRTYEDC RVR+  E   VV DERDVSL    L+ELK+LL  E +V  PRVF+KGRY+GG
Sbjct: 223 RRTYEDCMRVRAIMEQQGVVVDERDVSLDAGVLSELKELLQDEASVAPPRVFVKGRYLGG 282

Query: 142 VDELTELNESGKLGRMLRSARVEM--GIGRQACEGCGGARFVPCFDCGGSCKVVLANGDK 199
             E+T +NE GKLGR+LR ARVE     GR  CEGCGGAR++PCF+CGGSCKV      K
Sbjct: 283 AAEVTAMNEHGKLGRVLRWARVERVGEEGRLTCEGCGGARWLPCFECGGSCKVAAVGAAK 342

Query: 200 ----QRCGVCNENGLVHCPAC 216
               +RC  CNENGL+ CP C
Sbjct: 343 GERWERCVKCNENGLIRCPVC 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168038475|ref|XP_001771726.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677033|gb|EDQ63509.1| predicted protein [Physcomitrella patens subsp. patens]

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 115/162 (70%), Gaps = 3/162 (1%)

Query: 55  DLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQF 114
           D L  + EKCPPGG D VV+Y TSLRG+R+T+EDC+ +R   + + V  DERDVS+H +F
Sbjct: 459 DPLYKYEEKCPPGGDDRVVLYLTSLRGIRKTFEDCHSLRMILQSHSVWVDERDVSMHAEF 518

Query: 115 LNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEG 174
             EL+DLL G  V VPR+FIKGRY+GG DE+ +L+E GKL  +LR   V     R+AC+G
Sbjct: 519 RQELRDLLDGP-VIVPRLFIKGRYIGGSDEVRKLHEDGKLSDLLRDFPVVQ--FRKACDG 575

Query: 175 CGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENGLVHCPAC 216
           CGG RFVPC DC GSCK++ A  +  RC  CNENGL+ CP C
Sbjct: 576 CGGVRFVPCPDCSGSCKIITAANEVARCPDCNENGLIRCPRC 617

Source: Physcomitrella patens subsp. patens

Species: Physcomitrella patens

Genus: Physcomitrella

Family: Funariaceae

Order: Funariales

Class: Bryopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2019479	368	AT1G64500 [Arabidopsis thalian	0.944	0.559	0.572	2.2e-59
TAIR|locus:2150640	384	AT5G03870 [Arabidopsis thalian	0.770	0.437	0.502	7.5e-41
TAIR|locus:2139252	334	AT4G10630 [Arabidopsis thalian	0.972	0.634	0.421	7e-38
TAIR|locus:2164285	239	AT5G06470 [Arabidopsis thalian	0.724	0.661	0.462	1.7e-36
TAIR|locus:2035589	314	AT1G32760 [Arabidopsis thalian	0.871	0.605	0.446	3.1e-35
TAIR|locus:2159038	274	AT5G13810 [Arabidopsis thalian	0.944	0.751	0.414	7.4e-34
TAIR|locus:2179157	401	AT5G01420 [Arabidopsis thalian	0.816	0.443	0.381	2e-33
TAIR|locus:2098408	428	AT3G28850 [Arabidopsis thalian	0.568	0.289	0.485	6.2e-33
TAIR|locus:2080635	417	AT3G57070 [Arabidopsis thalian	0.683	0.357	0.448	1.4e-32
TAIR|locus:2040267	402	AT2G41330 [Arabidopsis thalian	0.655	0.355	0.476	6e-32

TAIR|locus:2019479 AT1G64500 [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 126/220 (57%), Positives = 155/220 (70%)

Query:     9 NKAGSRADHHTEG-----EGFKPVKENIFIVRDRMEREKEGKQAKYEKLIRDLLSDFPEK 63
             +K    +D  TE       G + VKENIF+ RDR  REKEG   K   +  D L +FPEK
Sbjct:   148 SKLRPESDDRTESTQSSYSGPRSVKENIFVKRDRERREKEGN--KKPVMNWDPLREFPEK 205

Query:    64 CPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG 123
             CPPGG +G+++YTTSL+GVRRTYEDC RVR+  E   VV DERDVSL    L+ELK+LL 
Sbjct:   206 CPPGGGEGLIVYTTSLQGVRRTYEDCMRVRAIMEQQGVVVDERDVSLDAGVLSELKELLQ 265

Query:   124 GE-TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVE-MGI-GRQACEGCGGARF 180
              E +V  PRVF+KGRY+GG  E+T +NE+GKLGR+LR ARVE +G  GR  CEGCGGAR+
Sbjct:   266 DEASVAPPRVFVKGRYLGGAAEVTAMNENGKLGRVLRWARVERVGEEGRLTCEGCGGARW 325

Query:   181 VPCFDCGGSCKVVL---ANGDK-QRCGVCNENGLVHCPAC 216
             +PCF+CGGSCKV     A G++ +RC  CNENGL+ CP C
Sbjct:   326 LPCFECGGSCKVAAVGAAKGERWERCVKCNENGLIRCPVC 365

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005884 "actin filament" evidence=IDA

GO:0009902 "chloroplast relocation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IDA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2150640 AT5G03870 [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 86/171 (50%), Positives = 107/171 (62%)

Query:    48 KYEKLIRDLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERD 107
             K EK  R +L  FPEKCPPGG   VVIY T+LRG+R+T+EDCN VRS  + + V   ERD
Sbjct:   216 KTEKTER-ILEKFPEKCPPGGEHSVVIYITTLRGIRKTFEDCNVVRSILDSHEVRFSERD 274

Query:   108 VSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGI 167
             VS+H  F  E++ ++G + V +P VF+KGR VG V+E+  L E GKLG +L        +
Sbjct:   275 VSMHSVFKEEIRGIMGTKHVKIPAVFVKGRMVGSVEEVMRLEEEGKLGILLEGIPAAR-L 333

Query:   168 GRQACEGCGGARFVPCFDCGGSCKVVLANGDKQ-RCGVCNENGLVHCPACS 217
             G   C GCGG RF+ C  C GSCKV         +C  CNENGLV CP CS
Sbjct:   334 GGSCCRGCGGMRFMMCVVCNGSCKVREEEKKSMVKCLKCNENGLVLCPICS 384

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2139252 AT4G10630 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 96/228 (42%), Positives = 123/228 (53%)

Query:     2 GTELKTNNKAGSRADH-HTEGEGFKPVKENIFIVRDRMEREKEGKQAKYEKLIRDLLSDF 60
             G E K N+    R    +   E  KP+  N    R+  +      +  ++ L   L   F
Sbjct:   111 GGENKENSDPSRRNPRKNLNDEVLKPLDLN----REDSDSNSRSPRKSFKPLDLKLDEKF 166

Query:    61 PEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKD 120
                CPPGG + VV+YTTSLRGVR+T+E CN VR+  E   VV  ERDVS+  +F  EL  
Sbjct:   167 ERICPPGGENRVVMYTTSLRGVRQTFEACNAVRAAVESFGVVVCERDVSMDRRFREELVS 226

Query:   121 LL----GGETVTV--PRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQ--AC 172
             L+    G E V    PRVF+KGRY+GG +E+  L E G  G ++     +   G +  AC
Sbjct:   227 LMAKRVGDEGVAALPPRVFVKGRYIGGGEEVLRLVEEGSFGELISGIPRKKAGGCESGAC 286

Query:   173 EGCGGARFVPCFDCGGSCKVVLANGDKQ---RCGVCNENGLVHCPACS 217
             +GCGG  F+PCF C GSCK+V   G      RC  CNENGLV CP CS
Sbjct:   287 DGCGGLFFLPCFRCNGSCKMVKGWGSASVVVRCNECNENGLVPCPICS 334

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2164285 AT5G06470 [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 80/173 (46%), Positives = 111/173 (64%)

Query:    54 RDLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQ 113
             R +L +F E CPPGG D VV YTT LR VR+T+E C RVR   E ++V+  ERDVS+  +
Sbjct:    73 RGILLEFKENCPPGGEDSVVFYTTGLRSVRKTFEACRRVRFLLENHQVMYRERDVSMDSE 132

Query:   114 FLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRS-ARVEMGIGRQAC 172
             F  E+  LLGG+ VT PR+FI+GRY+GG +E+  LNE+GKL ++L+  ++V+       C
Sbjct:   133 FREEMWRLLGGK-VTSPRLFIRGRYIGGAEEVVALNENGKLKKLLQGISQVD-----SPC 186

Query:   173 EGCGGARFVPCFDCGGSCKVVLANGDKQ--------RCGVCNENGLVHCPACS 217
             E C   RF+ C  C GS +++  + D++        RC  CNENGLV CP C+
Sbjct:   187 ESCENERFLICSSCNGSTRLLAEHHDEESSNDNMWTRCRECNENGLVKCPLCT 239

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2035589 AT1G32760 [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 91/204 (44%), Positives = 116/204 (56%)

Query:    26 PVKENIFIVRDRMEREKEGKQAK----YEKL--IRDLLSDFPEKCPPGGSDGVVIYTTSL 79
             PVK N F     +++E      K    YE L  +   L++  E+   GG + VVIYTTSL
Sbjct:   113 PVKCNGF--SGGLKKENSDPNLKNPNDYEVLKPLDPKLAEESERLCDGGENRVVIYTTSL 170

Query:    80 RGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGET---VTVPRVFIKG 136
             RGVRRT+E CN VR+  E   VV  ERDVS+   F  EL +L+  E+   V  PRVF+KG
Sbjct:   171 RGVRRTFEACNAVRAAIESFGVVVCERDVSMDRGFREELSNLMAVESTAAVLPPRVFVKG 230

Query:   137 RYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLAN 196
             +Y+GG +E+  L E G LG +L+    +       C GCGG  F+PC  C GSCKVV   
Sbjct:   231 KYIGGAEEVMRLVEEGLLGELLKEIPRKKDRCGGGCGGCGGLAFLPCSGCNGSCKVVEGW 290

Query:   197 GDKQ---RCGVCNENGLVHCPACS 217
             G+     +C  CNENGLV CP CS
Sbjct:   291 GNDAVVVKCKECNENGLVRCPICS 314

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2159038 AT5G13810 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 92/222 (41%), Positives = 125/222 (56%)

Query:     1 MGTELKTNNKAGSRADHHTEGEGFKPVKENIFIVRDRMEREKEGKQAKYEKLIRDL--LS 58
             MGT LK   K   R       E  KPVK  +  +    +++K GK    E  I     L+
Sbjct:    65 MGTSLKGKVKNLCRLF-----ETSKPVKPALAEIP---QKQKSGKSLLPESRISPFSSLN 116

Query:    59 DFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNEL 118
             +   + P G  D +V+Y TSLRG+RRTYEDC  VR  F   RV  DERDVS+   +  EL
Sbjct:   117 NSVIRLP-GTEDRIVVYFTSLRGIRRTYEDCYAVRMIFRGFRVWIDERDVSMDIAYRKEL 175

Query:   119 KDLLGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEM-GIGRQACEGCGG 177
             +  +G ++V++P+VFI G+YVGG D +  L E G+L ++L+   +   G     C  CG 
Sbjct:   176 QIAMGEKSVSLPQVFIMGKYVGGADVIKSLFEIGELAKILKEFPMRQPGF---VCHCCGD 232

Query:   178 ARFVPCFDCGGSCKVVLANGDK-QRCGVCNENGLVHCPACSS 218
              RFVPC +C GS K+   + D+ +RC  CNENGL+ CP CSS
Sbjct:   233 IRFVPCSNCSGSKKLFDEDEDRVKRCPECNENGLIRCPDCSS 274

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2179157 AT5G01420 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 71/186 (38%), Positives = 110/186 (59%)

Query:    34 VRDRMEREKE-GKQAKYEKLIRDLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRV 92
             +R+ +  E++ GK       + D L +F E+CPPGG + VV YTT+LRG+R+T++DCN +
Sbjct:   222 IREEVIGEEDIGKDGN---TLMDPLLEFEERCPPGGEESVVFYTTTLRGIRKTFDDCNMI 278

Query:    93 RSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV-FIKGRYVGGVDELTELNES 151
             R   +  +V   ERDVS+H ++  EL+ +   ET  +P V F+KGR +GG   +  L+E 
Sbjct:   279 RFLLDSFKVKYYERDVSMHREYREELRRISAAETEVLPPVLFVKGRCIGGAQRVLGLHEQ 338

Query:   152 GKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENGLV 211
             GK   +     +    G + C  C G RF+ C  C GS +++  +G + +C +CNENGL+
Sbjct:   339 GKFKILFEGIPIT---GDERCRRCDGFRFLMCDGCRGSRRIISGDGSRIQCLICNENGLI 395

Query:   212 HCPACS 217
              C  CS
Sbjct:   396 VCVGCS 401

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2098408 AT3G28850 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
 Identities = 65/134 (48%), Positives = 87/134 (64%)

Query:    68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG---- 123
             G + V++Y TSLRG+R+TYE+   VR   +   +  DERDVS+H  F +ELK+LLG    
Sbjct:   249 GKERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFN 308

Query:   124 -GETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA-RVEM---GIGRQACEGCGGA 178
              G  +T+PRVF+  +Y+GG +E+ +LNE GKL ++L    RVE    G G + CE CG  
Sbjct:   309 KGVGITLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCERVEENQNGNGLE-CEACGDV 367

Query:   179 RFVPCFDCGGSCKV 192
             RFVPC  C GSCKV
Sbjct:   368 RFVPCETCSGSCKV 381

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2080635 AT3G57070 [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 69/154 (44%), Positives = 99/154 (64%)

Query:    66 PGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGG- 124
             PG  D +V+Y T+LRG+R+TYEDC  VR+     +V  DERD+S+  ++  EL+ +LG  
Sbjct:   264 PGTEDKIVLYFTTLRGIRKTYEDCCCVRAILRGVQVSVDERDISMDSKYRKELQSVLGAA 323

Query:   125 -ETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPC 183
              + V +P+VFI+G ++GGV+E+ +LN+ G+L  ML+       +G   C  CG ARFVPC
Sbjct:   324 EKPVCLPQVFIRGTHIGGVEEIMQLNDGGELAEMLKDFPACERLG--TCRSCGDARFVPC 381

Query:   184 FDCGGSCKVVLANGDK-QRCGVCNENGLVHCPAC 216
              +C GS KV     ++ +RC  CNENGLV C  C
Sbjct:   382 TNCDGSTKVFEEQDERFKRCPKCNENGLVRCRVC 415

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2040267 AT2G41330 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 70/147 (47%), Positives = 96/147 (65%)

Query:    72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGET-VTVP 130
             +V+Y TSLRG+R+TYEDC  VR+     +V  +ERD+S+  ++  EL++ LG E  V +P
Sbjct:   256 IVVYFTSLRGIRKTYEDCCCVRAILRGFQVAVEERDISMDSKYRKELQNALGEEKPVCLP 315

Query:   131 RVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSC 190
             +VFI+G  +GG++E+  LN+ G+L  ML+       IG  AC+ CG ARFVPC +CGGS 
Sbjct:   316 QVFIRGVRIGGIEEIKILNDGGELAEMLKDFPACESIG--ACDSCGDARFVPCTNCGGST 373

Query:   191 KVVLANGDK-QRCGVCNENGLVHCPAC 216
             KV     D  +RC  CNENGLV C  C
Sbjct:   374 KVFEEQEDGFKRCNGCNENGLVRCNKC 400

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
cd03031	147	cd03031, GRX_GRX_like, Glutaredoxin (GRX) family,	1e-61
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	2e-17
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	3e-10
TIGR02181	79	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	3e-07
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	9e-07
cd03418	75	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) fam	1e-06
TIGR02180	84	TIGR02180, GRX_euk, Glutaredoxin	1e-05
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	2e-05
COG0278	105	COG0278, COG0278, Glutaredoxin-related protein [Po	9e-05
cd03028	90	cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family	6e-04
cd03027	73	cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishe	7e-04
TIGR00365	97	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4	9e-04
PRK10638	83	PRK10638, PRK10638, glutaredoxin 3; Provisional	0.001
TIGR02189	99	TIGR02189, GlrX-like_plant, Glutaredoxin-like fami	0.002

>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

 Score =  188 bits (480), Expect = 1e-61
 Identities = 83/149 (55%), Positives = 101/149 (67%), Gaps = 8/149 (5%)

Query: 71  GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGET--VT 128
            VV+YTTSLRGVR+T+EDCN VR+  E  RV  DERDVS+   F  EL++LLG E   V+
Sbjct: 1   RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVS 60

Query: 129 VPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGG 188
           +PRVF+ GRY+GG +E+  LNESG+L ++L+  R     G   CEGCGGARFVPC +C G
Sbjct: 61  LPRVFVDGRYLGGAEEVLRLNESGELRKLLKGIR--ARAGGGVCEGCGGARFVPCSECNG 118

Query: 189 SCKVVLANGDK----QRCGVCNENGLVHC 213
           SCKV   N        RC  CNENGLV C
Sbjct: 119 SCKVFAENATAAGGFLRCPECNENGLVRC 147

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. Length = 147

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 73.3 bits (181), Expect = 2e-17
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           VV+++ S      T   C R +   E   +  +E D+   G+   ELK+L G    TVP+
Sbjct: 2   VVVFSKS------TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW--PTVPQ 53

Query: 132 VFIKGRYVGGVDELTELNE 150
           +FI G ++GG D+L  L+E
Sbjct: 54  IFINGEFIGGYDDLKALHE 72

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 53.6 bits (130), Expect = 3e-10
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           VV++T        T   C R +   +   V  +E DV    +   ELK+L G    TVP+
Sbjct: 1   VVLFTKP------TCPFCKRAKRLLDSLGVKFEEIDVDEDPEIREELKELSGW--PTVPQ 52

Query: 132 VFIKGRYV 139
           VFI G ++
Sbjct: 53  VFIDGEHI 60

Length = 60

>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           V IYT      +     C R ++      V   E  V       +E+    G    TVP+
Sbjct: 1   VTIYT------KPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR--RTVPQ 52

Query: 132 VFIKGRYVGGVDELTELNESGKLGRML 158
           +FI   +VGG D+L  L+  GKL  +L
Sbjct: 53  IFIGDVHVGGCDDLYALDREGKLDPLL 79

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides [Energy metabolism, Electron transport]. Length = 79

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 44.8 bits (107), Expect = 9e-07
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)

Query: 116 NELKDLLGGET--VTVPRVFIKGRYVGGVDELTELNESGKL 154
           +E++D L   T   TVP VFI G+++GG D+L  L++SGKL
Sbjct: 39  SEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKL 79

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 7/81 (8%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           V IYT         Y  C R ++  +   V  +E DV        E+ +  GG   TVP+
Sbjct: 2   VEIYTKPNCP----Y--CVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQ 54

Query: 132 VFIKGRYVGGVDELTELNESG 152
           +FI   ++GG D+L  L   G
Sbjct: 55  IFIGDVHIGGCDDLYALERKG 75

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily. Length = 75

>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 89  CNRVRSTFEVNRV----VTDERDVSLHGQFLNELKDLLG---GETVTVPRVFIKGRYVGG 141
           C + +       V       E D   +G   +E++D L    G+  TVP +FI G+++GG
Sbjct: 12  CKKAKEILAKLNVKPAYEVVELDQLSNG---SEIQDYLEEITGQR-TVPNIFINGKFIGG 67

Query: 142 VDELTELNESGKLGRML 158
             +L  L +SGKL  +L
Sbjct: 68  CSDLLALYKSGKLAELL 84

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. Length = 84

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           V IYT      +     C R +   +   V  +E DV              G    TVP+
Sbjct: 3   VTIYT------KPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQ 56

Query: 132 VFIKGRYVGGVDELTELNESGKL 154
           +FI G++VGG D+L  L   GKL
Sbjct: 57  IFIGGKHVGGCDDLDALEAKGKL 79

Length = 80

>gnl|CDD|223355 COG0278, COG0278, Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 13/34 (38%), Positives = 24/34 (70%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           T P++++ G +VGG D + E+ +SG+L  +L+ A
Sbjct: 71  TFPQLYVNGEFVGGCDIVREMYQSGELQTLLKEA 104

Length = 105

>gnl|CDD|239326 cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 12/27 (44%), Positives = 20/27 (74%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKL 154
           T P++++ G  VGG D + E++ESG+L
Sbjct: 63  TFPQLYVNGELVGGCDIVKEMHESGEL 89

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein in Arabidopsis thaliana, and PfGLP-1, a GRX-like protein from Plasmodium falciparum. Length = 90

>gnl|CDD|239325 cd03027, GRX_DEP, Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           V IY+      R   EDC  VR       +   E ++ +  +   EL++  G     VP+
Sbjct: 3   VTIYS------RLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSS--VVPQ 54

Query: 132 VFIKGRYVGGVDELTELNE 150
           +F   + VGG+ +L  L E
Sbjct: 55  IFFNEKLVGGLTDLKSLEE 73

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions. Length = 73

>gnl|CDD|188046 TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 13/31 (41%), Positives = 24/31 (77%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRML 158
           T+P++++KG +VGG D + E+ +SG+L  +L
Sbjct: 67  TIPQLYVKGEFVGGCDIIMEMYQSGELQTLL 97

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation [Energy metabolism, Electron transport]. Length = 97

>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 13/32 (40%), Positives = 22/32 (68%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
           TVP++FI  +++GG D+L  L+  G L  +L+
Sbjct: 52  TVPQIFIDAQHIGGCDDLYALDARGGLDPLLK 83

Length = 83

>gnl|CDD|233771 TIGR02189, GlrX-like_plant, Glutaredoxin-like family

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
            VP VF+ G+ VGG++ +  L+ SG L  ML+ A
Sbjct: 61  AVPAVFVGGKLVGGLENVMALHISGSLVPMLKQA 94

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	100.0
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	100.0
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	99.92
PRK10824	115	glutaredoxin-4; Provisional	99.88
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	99.88
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	99.88
PHA03050	108	glutaredoxin; Provisional	99.87
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	99.85
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	99.84
PRK10638	83	glutaredoxin 3; Provisional	99.83
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	99.79
PTZ00062	204	glutaredoxin; Provisional	99.79
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	99.79
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	99.77
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	99.76
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	99.73
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	99.72
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	99.72
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	99.71
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	99.69
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	99.68
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	99.68
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	99.67
PRK11200	85	grxA glutaredoxin 1; Provisional	99.66
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	99.65
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	99.62
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	99.54
PRK10329	81	glutaredoxin-like protein; Provisional	99.46
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	99.44
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.2
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	99.13
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.91
KOG4023	108	consensus Uncharacterized conserved protein [Funct	98.8
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.72
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	98.63
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	98.54
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	98.44
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	98.42
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	98.41
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	98.22
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	98.17
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	98.07
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	98.04
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	98.03
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	98.0
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	97.96
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	97.94
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.94
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	97.9
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.88
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	97.87
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	97.84
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	97.75
PRK12559	131	transcriptional regulator Spx; Provisional	97.74
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	97.67
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	97.63
cd03054	72	GST_N_Metaxin GST_N family, Metaxin subfamily; com	97.62
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	97.6
cd03058	74	GST_N_Tau GST_N family, Class Tau subfamily; GSTs	97.57
PHA02125	75	thioredoxin-like protein	97.53
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	97.45
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.38
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	97.35
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.32
cd03076	73	GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar	97.31
KOG3029	370	consensus Glutathione S-transferase-related protei	97.29
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	97.25
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	97.21
cd03039	72	GST_N_Sigma_like GST_N family, Class Sigma_like; c	97.17
cd03048	81	GST_N_Ure2p_like GST_N family, Ure2p-like subfamil	97.09
cd03049	73	GST_N_3 GST_N family, unknown subfamily 3; compose	97.02
COG1393	117	ArsC Arsenate reductase and related proteins, glut	97.0
PRK10387	210	glutaredoxin 2; Provisional	96.97
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	96.97
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	96.95
TIGR02182	209	GRXB Glutaredoxin, GrxB family. This model include	96.92
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	96.88
PRK10853	118	putative reductase; Provisional	96.85
cd03080	75	GST_N_Metaxin_like GST_N family, Metaxin subfamily	96.81
PRK10026	141	arsenate reductase; Provisional	96.8
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	96.78
PLN03165	111	chaperone protein dnaJ-related; Provisional	96.72
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	96.69
cd03038	84	GST_N_etherase_LigE GST_N family, Beta etherase Li	96.67
cd03050	76	GST_N_Theta GST_N family, Class Theta subfamily; c	96.63
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	96.59
cd03043	73	GST_N_1 GST_N family, unknown subfamily 1; compose	96.5
cd03044	75	GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo	96.48
cd02947	93	TRX_family TRX family; composed of two groups: Gro	96.36
PRK09481	211	sspA stringent starvation protein A; Provisional	96.34
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	96.3
cd03046	76	GST_N_GTT1_like GST_N family, Saccharomyces cerevi	96.27
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	96.05
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	96.02
cd03047	73	GST_N_2 GST_N family, unknown subfamily 2; compose	95.97
cd03057	77	GST_N_Beta GST_N family, Class Beta subfamily; GST	95.96
PF13409	70	GST_N_2: Glutathione S-transferase, N-terminal dom	95.93
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	95.89
TIGR00862	236	O-ClC intracellular chloride channel protein. Thes	95.87
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	95.79
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.45
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.18
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	95.06
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	94.93
PTZ00051	98	thioredoxin; Provisional	94.93
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	94.79
PRK15113	214	glutathione S-transferase; Provisional	94.74
cd03077	79	GST_N_Alpha GST_N family, Class Alpha subfamily; G	94.71
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	94.69
TIGR01262	210	maiA maleylacetoacetate isomerase. Maleylacetoacet	94.61
PHA02278	103	thioredoxin-like protein	94.57
PRK09381	109	trxA thioredoxin; Provisional	94.56
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	94.51
KOG0406	231	consensus Glutathione S-transferase [Posttranslati	94.46
PLN02473	214	glutathione S-transferase	94.24
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	94.16
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	94.11
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	94.1
PLN02817	265	glutathione dehydrogenase (ascorbate)	93.94
PLN02378	213	glutathione S-transferase DHAR1	93.38
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	93.24
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	93.19
PRK10767	371	chaperone protein DnaJ; Provisional	93.04
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	93.02
PRK14300	372	chaperone protein DnaJ; Provisional	92.95
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	92.88
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	92.86
cd03078	73	GST_N_Metaxin1_like GST_N family, Metaxin subfamil	92.84
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	92.78
PF13901	202	DUF4206: Domain of unknown function (DUF4206)	92.55
PRK10996	139	thioredoxin 2; Provisional	92.49
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	92.31
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	92.29
cd03079	74	GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me	92.23
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	91.87
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	91.83
KOG2813	406	consensus Predicted molecular chaperone, contains	91.7
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	91.62
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	91.5
PRK14284	391	chaperone protein DnaJ; Provisional	91.47
PLN02395	215	glutathione S-transferase	91.35
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	91.27
PRK14285	365	chaperone protein DnaJ; Provisional	91.27
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	91.07
PRK13972	215	GSH-dependent disulfide bond oxidoreductase; Provi	90.98
PRK10357	202	putative glutathione S-transferase; Provisional	90.77
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	90.75
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	90.7
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	90.66
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	90.62
PRK14288	369	chaperone protein DnaJ; Provisional	90.51
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	90.19
PRK14286	372	chaperone protein DnaJ; Provisional	90.17
cd03075	82	GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar	90.12
PRK14298	377	chaperone protein DnaJ; Provisional	90.07
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	90.04
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	89.96
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	89.95
KOG4420	325	consensus Uncharacterized conserved protein (Gangl	89.92
PRK14295	389	chaperone protein DnaJ; Provisional	89.91
PRK14287	371	chaperone protein DnaJ; Provisional	89.89
PRK14301	373	chaperone protein DnaJ; Provisional	89.87
PRK14294	366	chaperone protein DnaJ; Provisional	89.79
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	89.57
PRK14291	382	chaperone protein DnaJ; Provisional	89.52
PRK11752	264	putative S-transferase; Provisional	89.5
PRK14282	369	chaperone protein DnaJ; Provisional	89.47
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	89.4
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	89.11
COG0625	211	Gst Glutathione S-transferase [Posttranslational m	89.05
PRK14290	365	chaperone protein DnaJ; Provisional	88.98
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	88.97
PRK14289	386	chaperone protein DnaJ; Provisional	88.8
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	88.66
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	88.65
PF10865	120	DUF2703: Domain of unknown function (DUF2703); Int	88.48
PTZ00057	205	glutathione s-transferase; Provisional	88.39
PRK14279	392	chaperone protein DnaJ; Provisional	88.26
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	88.2
COG3118	304	Thioredoxin domain-containing protein [Posttransla	87.92
PRK14280	376	chaperone protein DnaJ; Provisional	87.83
PRK14293	374	chaperone protein DnaJ; Provisional	87.77
PRK14292	371	chaperone protein DnaJ; Provisional	87.76
KOG1422	221	consensus Intracellular Cl- channel CLIC, contains	87.25
PRK14297	380	chaperone protein DnaJ; Provisional	87.23
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	87.14
PRK10542	201	glutathionine S-transferase; Provisional	86.93
PRK14296	372	chaperone protein DnaJ; Provisional	86.89
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	86.75
PF02798	76	GST_N: Glutathione S-transferase, N-terminal domai	86.65
PRK14276	380	chaperone protein DnaJ; Provisional	86.55
PRK14278	378	chaperone protein DnaJ; Provisional	86.54
PRK14296	372	chaperone protein DnaJ; Provisional	86.38
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	86.04
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	85.59
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	85.59
PRK14285	365	chaperone protein DnaJ; Provisional	85.35
PRK14282	369	chaperone protein DnaJ; Provisional	85.27
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	84.95
PRK14277	386	chaperone protein DnaJ; Provisional	84.95
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	84.84
COG3019	149	Predicted metal-binding protein [General function	84.67
PRK14280	376	chaperone protein DnaJ; Provisional	84.62
PRK14283	378	chaperone protein DnaJ; Provisional	84.38
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	84.35
PRK14284	391	chaperone protein DnaJ; Provisional	84.25
PTZ00037	421	DnaJ_C chaperone protein; Provisional	84.13
PRK14288	369	chaperone protein DnaJ; Provisional	84.13
PRK14301	373	chaperone protein DnaJ; Provisional	84.12
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	84.02
PRK14281	397	chaperone protein DnaJ; Provisional	83.98
PRK14276	380	chaperone protein DnaJ; Provisional	83.77
PRK14279	392	chaperone protein DnaJ; Provisional	83.71
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	83.62
PRK10767	371	chaperone protein DnaJ; Provisional	83.57
PRK14297	380	chaperone protein DnaJ; Provisional	83.57
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	83.45
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	83.23
PRK14277	386	chaperone protein DnaJ; Provisional	83.18
COG5494	265	Predicted thioredoxin/glutaredoxin [Posttranslatio	83.04
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	82.93
PRK14278	378	chaperone protein DnaJ; Provisional	82.82
PRK14286	372	chaperone protein DnaJ; Provisional	82.78
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	82.74
PRK14298	377	chaperone protein DnaJ; Provisional	82.71
PRK14300	372	chaperone protein DnaJ; Provisional	82.55
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	81.53
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	81.51
PRK14294	366	chaperone protein DnaJ; Provisional	81.3
PTZ00037	421	DnaJ_C chaperone protein; Provisional	81.29
PRK14295	389	chaperone protein DnaJ; Provisional	81.25
PRK14290	365	chaperone protein DnaJ; Provisional	81.23
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	80.98
TIGR00595	505	priA primosomal protein N'. All proteins in this f	80.97
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	80.96
PRK14281	397	chaperone protein DnaJ; Provisional	80.94
PRK14289	386	chaperone protein DnaJ; Provisional	80.89
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	80.48
PRK13728	181	conjugal transfer protein TrbB; Provisional	80.19

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-55  Score=386.33  Aligned_cols=159  Identities=60%  Similarity=1.135  Sum_probs=150.1

Q ss_pred             ccccCCCCCCCCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCC---cccccEE
Q 027825           56 LLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGE---TVTVPRV  132 (218)
Q Consensus        56 ~~~~~~~~~pp~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~---~~tvPqV  132 (218)
                      .+.+|.+.+||+++.+||||||+|||||+||++|..||+||++++|.|+||||+||..|++||++++ |.   ..++|+|
T Consensus       117 ~~~e~~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~l-g~~~~~~~LPrV  195 (281)
T KOG2824|consen  117 LLLEFKEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELL-GEDEKAVSLPRV  195 (281)
T ss_pred             chhhhhhcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHH-hcccccCccCeE
Confidence            4568999999999999999999999999999999999999999999999999999999999999999 54   7889999


Q ss_pred             EECCEEEecchhhHhHHHhCcHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCCCceeee---cCCceeccCCcCcCC
Q 027825          133 FIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVL---ANGDKQRCGVCNENG  209 (218)
Q Consensus       133 FI~G~~IGG~del~~l~e~G~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~---~~~~~~rC~~CnenG  209 (218)
                      ||+|+||||+++|++|+|.|+|.+||++++. .  +...|++|||+||+||+.||||+|++.   .+..++||++|||||
T Consensus       196 FV~GryIGgaeeV~~LnE~GkL~~lL~~~p~-~--~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENG  272 (281)
T KOG2824|consen  196 FVKGRYIGGAEEVVRLNEEGKLGKLLKGIPC-E--GGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENG  272 (281)
T ss_pred             EEccEEeccHHHhhhhhhcchHHHHHhcCCC-C--CCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCC
Confidence            9999999999999999999999999999993 2  578999999999999999999999998   445699999999999


Q ss_pred             cccCCCCCC
Q 027825          210 LVHCPACSS  218 (218)
Q Consensus       210 l~~C~~C~~  218 (218)
                      |||||+|+.
T Consensus       273 LvrCp~Cs~  281 (281)
T KOG2824|consen  273 LVRCPVCSN  281 (281)
T ss_pred             ceeCCccCC
Confidence            999999974

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=100.00  E-value=6.9e-53  Score=344.26  Aligned_cols=140  Identities=59%  Similarity=1.101  Sum_probs=133.1

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCC---cccccEEEECCEEEecchhhHh
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGE---TVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~---~~tvPqVFI~G~~IGG~del~~  147 (218)
                      +||||||||+|||+|||+|.+||+||++++|.|+|+||+||+++++||++++ |.   +.++|||||+|+||||+|++++
T Consensus         1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~-g~~~~~~tvPqVFI~G~~IGG~del~~   79 (147)
T cd03031           1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL-GAELKAVSLPRVFVDGRYLGGAEEVLR   79 (147)
T ss_pred             CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh-CCCCCCCCCCEEEECCEEEecHHHHHH
Confidence            5999999999999999999999999999999999999999999999999998 53   5899999999999999999999


Q ss_pred             HHHhCcHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCCCceeeecC----CceeccCCcCcCCcccC
Q 027825          148 LNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLAN----GDKQRCGVCNENGLVHC  213 (218)
Q Consensus       148 l~e~G~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~----~~~~rC~~CnenGl~~C  213 (218)
                      |||+|+|.++|++++...  +...|++|||.|||||++||||+|++.++    +.++||++|||||||||
T Consensus        80 L~e~G~L~~lL~~~~~~~--~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          80 LNESGELRKLLKGIRARA--GGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             HHHcCCHHHHHhhccccc--CCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence            999999999999997765  67789999999999999999999999987    45999999999999999

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=99.92  E-value=5e-25  Score=167.11  Aligned_cols=88  Identities=18%  Similarity=0.323  Sum_probs=84.0

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCC--CcccccEEEECCEEEecchhhHhHH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGG--ETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g--~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      |+||+||++|+|++...|+.|+++|++++|.|+|+||++|++.+++|++++++  +..++|||||+++||||+|++.+|+
T Consensus         2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~   81 (92)
T cd03030           2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK   81 (92)
T ss_pred             EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999831  3699999999999999999999999


Q ss_pred             HhCcHHHHHh
Q 027825          150 ESGKLGRMLR  159 (218)
Q Consensus       150 e~G~L~~lL~  159 (218)
                      ++|+|+++|+
T Consensus        82 e~g~L~~lLk   91 (92)
T cd03030          82 ENNTLEEFLK   91 (92)
T ss_pred             hCCCHHHHhC
Confidence            9999999985

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>PRK10824 glutaredoxin-4; Provisional

Probab=99.88  E-value=1.5e-22  Score=159.42  Aligned_cols=94  Identities=15%  Similarity=0.261  Sum_probs=86.6

Q ss_pred             CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      .+++||||+++. .-+.+||||.+++++|.++++.|.++||..+.+.+++|++++ | ++|+|||||+|++|||+|++.+
T Consensus        13 ~~~~Vvvf~Kg~-~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~s-g-~~TVPQIFI~G~~IGG~ddl~~   89 (115)
T PRK10824         13 AENPILLYMKGS-PKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYA-N-WPTFPQLWVDGELVGGCDIVIE   89 (115)
T ss_pred             hcCCEEEEECCC-CCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHh-C-CCCCCeEEECCEEEcChHHHHH
Confidence            578899999962 344579999999999999999999999999999999999998 7 9999999999999999999999


Q ss_pred             HHHhCcHHHHHhhhhhh
Q 027825          148 LNESGKLGRMLRSARVE  164 (218)
Q Consensus       148 l~e~G~L~~lL~~~~~~  164 (218)
                      |+++|+|.++|+.++..
T Consensus        90 l~~~G~L~~lL~~~~~~  106 (115)
T PRK10824         90 MYQRGELQQLIKETAAK  106 (115)
T ss_pred             HHHCCCHHHHHHHHHhh
Confidence            99999999999887764

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=99.88  E-value=2.7e-22  Score=152.75  Aligned_cols=88  Identities=23%  Similarity=0.337  Sum_probs=81.1

Q ss_pred             CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      .+++||||+++. .-+.+||+|.+++++|+++||+|+++||..+++.+++|++++ | ..++|||||+|++|||+|++++
T Consensus        10 ~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~t-g-~~tvP~vfi~g~~iGG~ddl~~   86 (97)
T TIGR00365        10 KENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYS-N-WPTIPQLYVKGEFVGGCDIIME   86 (97)
T ss_pred             ccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh-C-CCCCCEEEECCEEEeChHHHHH
Confidence            578999999864 334579999999999999999999999999999999999998 7 8999999999999999999999


Q ss_pred             HHHhCcHHHHH
Q 027825          148 LNESGKLGRML  158 (218)
Q Consensus       148 l~e~G~L~~lL  158 (218)
                      |+++|+|.++|
T Consensus        87 l~~~g~L~~~l   97 (97)
T TIGR00365        87 MYQSGELQTLL   97 (97)
T ss_pred             HHHCcChHHhC
Confidence            99999999876

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=99.88  E-value=3.8e-22  Score=152.50  Aligned_cols=88  Identities=28%  Similarity=0.425  Sum_probs=79.7

Q ss_pred             CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHH---HHHHHHHHhCCCcccccEEEECCEEEecchh
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQ---FLNELKDLLGGETVTVPRVFIKGRYVGGVDE  144 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~---~r~eLk~~~~g~~~tvPqVFI~G~~IGG~de  144 (218)
                      .+++|+||+++      +||+|.+++++|++++|+|+++||+.+++   ++++|.+++ | ..++|||||+|++|||+|+
T Consensus         6 ~~~~Vvvysk~------~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~t-g-~~tvP~Vfi~g~~iGG~dd   77 (99)
T TIGR02189         6 SEKAVVIFSRS------SCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLG-C-SPAVPAVFVGGKLVGGLEN   77 (99)
T ss_pred             ccCCEEEEECC------CCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhc-C-CCCcCeEEECCEEEcCHHH
Confidence            56889999999      59999999999999999999999988754   556777777 6 9999999999999999999


Q ss_pred             hHhHHHhCcHHHHHhhhhh
Q 027825          145 LTELNESGKLGRMLRSARV  163 (218)
Q Consensus       145 l~~l~e~G~L~~lL~~~~~  163 (218)
                      +++|+++|+|.++|+.+++
T Consensus        78 l~~l~~~G~L~~~l~~~~~   96 (99)
T TIGR02189        78 VMALHISGSLVPMLKQAGA   96 (99)
T ss_pred             HHHHHHcCCHHHHHHHhCc
Confidence            9999999999999987654

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=99.87  E-value=9.7e-22  Score=152.85  Aligned_cols=90  Identities=22%  Similarity=0.369  Sum_probs=83.1

Q ss_pred             CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCC---cEEEEECCC---CHHHHHHHHHHhCCCcccccEEEECCEEEec
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRV---VTDERDVSL---HGQFLNELKDLLGGETVTVPRVFIKGRYVGG  141 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV---~~~erDVs~---d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG  141 (218)
                      ..++|+||+++      +||||.+++++|++++|   .|+++||+.   +.+.+++|.+++ | ..++|+|||+|++|||
T Consensus        11 ~~~~V~vys~~------~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~t-G-~~tVP~IfI~g~~iGG   82 (108)
T PHA03050         11 ANNKVTIFVKF------TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQIT-G-GRTVPRIFFGKTSIGG   82 (108)
T ss_pred             ccCCEEEEECC------CChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHc-C-CCCcCEEEECCEEEeC
Confidence            45789999999      59999999999999999   799999986   678999999998 7 8999999999999999


Q ss_pred             chhhHhHHHhCcHHHHHhhhhhhc
Q 027825          142 VDELTELNESGKLGRMLRSARVEM  165 (218)
Q Consensus       142 ~del~~l~e~G~L~~lL~~~~~~~  165 (218)
                      +|++++|+++|+|.++|+.+++.+
T Consensus        83 ~ddl~~l~~~g~L~~~l~~~~~~~  106 (108)
T PHA03050         83 YSDLLEIDNMDALGDILSSIGVLR  106 (108)
T ss_pred             hHHHHHHHHcCCHHHHHHHccccc
Confidence            999999999999999999887654

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=99.85  E-value=8.3e-21  Score=142.17  Aligned_cols=85  Identities=22%  Similarity=0.310  Sum_probs=77.6

Q ss_pred             CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      .+++||||+++. .-..+||+|.+++++|+++||.|+++||..|.+++++|++++ | ..++|+|||+|++|||++++++
T Consensus         6 ~~~~vvvf~k~~-~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~-g-~~tvP~vfi~g~~iGG~~~l~~   82 (90)
T cd03028           6 KENPVVLFMKGT-PEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYS-N-WPTFPQLYVNGELVGGCDIVKE   82 (90)
T ss_pred             ccCCEEEEEcCC-CCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHh-C-CCCCCEEEECCEEEeCHHHHHH
Confidence            467899998852 334469999999999999999999999999999999999998 7 8999999999999999999999


Q ss_pred             HHHhCcHH
Q 027825          148 LNESGKLG  155 (218)
Q Consensus       148 l~e~G~L~  155 (218)
                      ||++|+|+
T Consensus        83 l~~~g~L~   90 (90)
T cd03028          83 MHESGELQ   90 (90)
T ss_pred             HHHcCCcC
Confidence            99999984

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=99.84  E-value=1.4e-20  Score=136.18  Aligned_cols=79  Identities=33%  Similarity=0.497  Sum_probs=75.9

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNES  151 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e~  151 (218)
                      |+||+++      +||+|.+++++|++++|.|+++||+++++.++++.+++ | ..++|+|||+|++|||++++.+|+++
T Consensus         1 v~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~-g-~~~vP~i~i~g~~igg~~~~~~~~~~   72 (79)
T TIGR02181         1 VTIYTKP------YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRS-G-RRTVPQIFIGDVHVGGCDDLYALDRE   72 (79)
T ss_pred             CEEEecC------CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHh-C-CCCcCEEEECCEEEcChHHHHHHHHc
Confidence            6899999      69999999999999999999999999999999999998 7 99999999999999999999999999


Q ss_pred             CcHHHHH
Q 027825          152 GKLGRML  158 (218)
Q Consensus       152 G~L~~lL  158 (218)
                      |+|+++|
T Consensus        73 g~l~~~l   79 (79)
T TIGR02181        73 GKLDPLL   79 (79)
T ss_pred             CChhhhC
Confidence            9999876

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PRK10638 glutaredoxin 3; Provisional

Probab=99.83  E-value=5.2e-20  Score=135.20  Aligned_cols=81  Identities=30%  Similarity=0.492  Sum_probs=77.2

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE  150 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e  150 (218)
                      +|+||+++      +|++|.+++.+|+.+||.|+++||+.+.+.+++|.++. | ..++|+||++|++|||++++++|++
T Consensus         3 ~v~ly~~~------~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~-g-~~~vP~i~~~g~~igG~~~~~~~~~   74 (83)
T PRK10638          3 NVEIYTKA------TCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRS-G-RTTVPQIFIDAQHIGGCDDLYALDA   74 (83)
T ss_pred             cEEEEECC------CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHh-C-CCCcCEEEECCEEEeCHHHHHHHHH
Confidence            69999999      59999999999999999999999999998999999988 6 8999999999999999999999999


Q ss_pred             hCcHHHHHh
Q 027825          151 SGKLGRMLR  159 (218)
Q Consensus       151 ~G~L~~lL~  159 (218)
                      +|+|.++|+
T Consensus        75 ~g~l~~~~~   83 (83)
T PRK10638         75 RGGLDPLLK   83 (83)
T ss_pred             cCCHHHHhC
Confidence            999999884

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.79  E-value=7e-19  Score=125.30  Aligned_cols=75  Identities=31%  Similarity=0.467  Sum_probs=69.7

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE  150 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e  150 (218)
                      +|+||+++      .|++|.+++.+|++++|.|+++||+.+.+.+++|.++. |...++|+|||+|++|||++++++|++
T Consensus         1 ~i~ly~~~------~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~-~~~~~vP~v~i~g~~igg~~~~~~~~~   73 (75)
T cd03418           1 KVEIYTKP------NCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRS-GGRRTVPQIFIGDVHIGGCDDLYALER   73 (75)
T ss_pred             CEEEEeCC------CChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh-CCCCccCEEEECCEEEeChHHHHHHHh
Confidence            58999999      59999999999999999999999999999999999988 623399999999999999999999999


Q ss_pred             hC
Q 027825          151 SG  152 (218)
Q Consensus       151 ~G  152 (218)
                      +|
T Consensus        74 ~g   75 (75)
T cd03418          74 KG   75 (75)
T ss_pred             Cc
Confidence            87

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PTZ00062 glutaredoxin; Provisional

Probab=99.79  E-value=5.8e-19  Score=151.36  Aligned_cols=91  Identities=19%  Similarity=0.263  Sum_probs=82.7

Q ss_pred             CCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhH
Q 027825           67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT  146 (218)
Q Consensus        67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~  146 (218)
                      ..+++|+||+++. .....|++|.+++++|++++|.|.++||..|.+.+++|++++ | ++++|||||+|++|||+|+++
T Consensus       110 i~~~~Vvvf~Kg~-~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~s-g-~~TvPqVfI~G~~IGG~d~l~  186 (204)
T PTZ00062        110 IRNHKILLFMKGS-KTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYS-N-WPTYPQLYVNGELIGGHDIIK  186 (204)
T ss_pred             HhcCCEEEEEccC-CCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHh-C-CCCCCeEEECCEEEcChHHHH
Confidence            3678999999962 223469999999999999999999999999999999999998 7 999999999999999999999


Q ss_pred             hHHHhCcHHHHHhh
Q 027825          147 ELNESGKLGRMLRS  160 (218)
Q Consensus       147 ~l~e~G~L~~lL~~  160 (218)
                      +|+++|+|+++|..
T Consensus       187 ~l~~~G~L~~~l~~  200 (204)
T PTZ00062        187 ELYESNSLRKVIPD  200 (204)
T ss_pred             HHHHcCChhhhhhh
Confidence            99999999999853

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=99.79  E-value=6e-19  Score=126.31  Aligned_cols=73  Identities=29%  Similarity=0.505  Sum_probs=68.9

Q ss_pred             CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      ++|+||+++      .|++|.+|+++|+++||+|+++||..+.+.+++|++++ | ..++|+|||||++|||++++++|+
T Consensus         1 ~~v~ly~~~------~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~-g-~~~vP~v~i~~~~iGg~~~~~~~~   72 (73)
T cd03027           1 GRVTIYSRL------GCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERT-G-SSVVPQIFFNEKLVGGLTDLKSLE   72 (73)
T ss_pred             CEEEEEecC------CChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh-C-CCCcCEEEECCEEEeCHHHHHhhc
Confidence            479999999      59999999999999999999999999999999999998 6 789999999999999999999886


Q ss_pred             H
Q 027825          150 E  150 (218)
Q Consensus       150 e  150 (218)
                      |
T Consensus        73 ~   73 (73)
T cd03027          73 E   73 (73)
T ss_pred             C
Confidence            4

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=3.2e-18  Score=132.65  Aligned_cols=89  Identities=30%  Similarity=0.512  Sum_probs=77.8

Q ss_pred             CCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCC---CHHHHHHHHHHhCCCcccccEEEECCEEEecch
Q 027825           67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL---HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVD  143 (218)
Q Consensus        67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~---d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~d  143 (218)
                      ..+++||||+++      +|++|.+++.+|...++.+..++++.   ..+++++|.+++ | .+++|+|||+|++|||.+
T Consensus        11 i~~~~VVifSKs------~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~t-g-~~tvP~vFI~Gk~iGG~~   82 (104)
T KOG1752|consen   11 ISENPVVIFSKS------SCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLT-G-QRTVPNVFIGGKFIGGAS   82 (104)
T ss_pred             hhcCCEEEEECC------cCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhc-C-CCCCCEEEECCEEEcCHH
Confidence            367889999999      59999999999999999865555543   357888888887 6 899999999999999999


Q ss_pred             hhHhHHHhCcHHHHHhhhhh
Q 027825          144 ELTELNESGKLGRMLRSARV  163 (218)
Q Consensus       144 el~~l~e~G~L~~lL~~~~~  163 (218)
                      ++++||.+|+|.++|+.+.+
T Consensus        83 dl~~lh~~G~L~~~l~~~~~  102 (104)
T KOG1752|consen   83 DLMALHKSGELVPLLKEAGA  102 (104)
T ss_pred             HHHHHHHcCCHHHHHHHhhc
Confidence            99999999999999987764

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=2.3e-18  Score=131.96  Aligned_cols=92  Identities=22%  Similarity=0.291  Sum_probs=85.9

Q ss_pred             CCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCC-CcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhh
Q 027825           67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNR-VVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDEL  145 (218)
Q Consensus        67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~g-V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del  145 (218)
                      ..+++||||.+.. .-.+.|.|+.++.++|...| ++|..+||-.|+++|+.|++.+ + |+|+||+||+|++|||.|-+
T Consensus        12 i~~n~VvLFMKGt-p~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s-~-WPT~PQLyi~GEfvGG~DIv   88 (105)
T COG0278          12 IKENPVVLFMKGT-PEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYS-N-WPTFPQLYVNGEFVGGCDIV   88 (105)
T ss_pred             hhcCceEEEecCC-CCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhc-C-CCCCceeeECCEEeccHHHH
Confidence            3578899999994 67778999999999999999 8999999999999999999998 5 99999999999999999999


Q ss_pred             HhHHHhCcHHHHHhhh
Q 027825          146 TELNESGKLGRMLRSA  161 (218)
Q Consensus       146 ~~l~e~G~L~~lL~~~  161 (218)
                      .+|+++|+|+++|+++
T Consensus        89 ~Em~q~GELq~~l~~~  104 (105)
T COG0278          89 REMYQSGELQTLLKEA  104 (105)
T ss_pred             HHHHHcchHHHHHHhc
Confidence            9999999999999764

>TIGR02180 GRX_euk Glutaredoxin

Probab=99.73  E-value=1.5e-17  Score=120.01  Aligned_cols=79  Identities=28%  Similarity=0.582  Sum_probs=71.0

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCc--EEEEECCCC---HHHHHHHHHHhCCCcccccEEEECCEEEecchhhH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVV--TDERDVSLH---GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT  146 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~--~~erDVs~d---~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~  146 (218)
                      |++|+++|      ||+|.+++.+|+++++.  |..+||+.+   .+.+++|.++. | ..++|+|||+|++|||+++++
T Consensus         1 V~~f~~~~------Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~-g-~~~vP~v~i~g~~igg~~~~~   72 (84)
T TIGR02180         1 VVVFSKSY------CPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEIT-G-QRTVPNIFINGKFIGGCSDLL   72 (84)
T ss_pred             CEEEECCC------ChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHh-C-CCCCCeEEECCEEEcCHHHHH
Confidence            68999995      99999999999999998  888887653   56677888887 6 889999999999999999999


Q ss_pred             hHHHhCcHHHHH
Q 027825          147 ELNESGKLGRML  158 (218)
Q Consensus       147 ~l~e~G~L~~lL  158 (218)
                      +|+++|+|+++|
T Consensus        73 ~~~~~g~l~~~~   84 (84)
T TIGR02180        73 ALYKSGKLAELL   84 (84)
T ss_pred             HHHHcCChhhhC
Confidence            999999999886

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.7e-17  Score=122.32  Aligned_cols=76  Identities=36%  Similarity=0.536  Sum_probs=67.6

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l  148 (218)
                      .|+||+++      +||||.+++++|+++|+.|+++|+.++.  +.++.+++.. | .+++|||||||++|||.+++.++
T Consensus         2 ~v~iyt~~------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~-g-~~tvP~I~i~~~~igg~~d~~~~   73 (80)
T COG0695           2 NVTIYTKP------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGK-G-QRTVPQIFIGGKHVGGCDDLDAL   73 (80)
T ss_pred             CEEEEECC------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhC-C-CCCcCEEEECCEEEeCcccHHHH
Confidence            58999999      6999999999999999999999999887  5555555554 5 99999999999999999999999


Q ss_pred             HHhCcH
Q 027825          149 NESGKL  154 (218)
Q Consensus       149 ~e~G~L  154 (218)
                      +..|.|
T Consensus        74 ~~~~~l   79 (80)
T COG0695          74 EAKGKL   79 (80)
T ss_pred             HhhccC
Confidence            888775

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.72  E-value=2.6e-17  Score=118.63  Aligned_cols=79  Identities=34%  Similarity=0.617  Sum_probs=71.2

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC---HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH---GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d---~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      +|++|+++      .||+|..++.+|+++++.|.++|++.+   .+.++++++++ | ..++|+||++|++|||++++.+
T Consensus         1 ~v~~y~~~------~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-g-~~~~P~v~~~g~~igg~~~~~~   72 (82)
T cd03419           1 PVVVFSKS------YCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELT-G-QRTVPNVFIGGKFIGGCDDLMA   72 (82)
T ss_pred             CEEEEEcC------CCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHh-C-CCCCCeEEECCEEEcCHHHHHH
Confidence            58999999      599999999999999999988887654   55678899888 6 8999999999999999999999


Q ss_pred             HHHhCcHHHH
Q 027825          148 LNESGKLGRM  157 (218)
Q Consensus       148 l~e~G~L~~l  157 (218)
                      |.++|+|+++
T Consensus        73 ~~~~g~l~~~   82 (82)
T cd03419          73 LHKSGKLVKL   82 (82)
T ss_pred             HHHcCCccCC
Confidence            9999999753

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=99.71  E-value=7e-17  Score=115.12  Aligned_cols=70  Identities=27%  Similarity=0.500  Sum_probs=63.3

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      +|+||+++      +||+|.+++++|++++|+|+++||+.+.. .++++.+. | ..++|+|||||++|||++++.++.
T Consensus         2 ~v~lys~~------~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~-g-~~~vP~ifi~g~~igg~~~l~~~l   71 (72)
T cd03029           2 SVSLFTKP------GCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVT-G-AMTVPQVFIDGELIGGSDDLEKYF   71 (72)
T ss_pred             eEEEEECC------CCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHh-C-CCCcCeEEECCEEEeCHHHHHHHh
Confidence            69999999      69999999999999999999999998874 46777776 6 899999999999999999988763

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.69  E-value=1.8e-16  Score=109.53  Aligned_cols=72  Identities=38%  Similarity=0.670  Sum_probs=67.8

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE  150 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e  150 (218)
                      +|+||+++      .|++|.+++.+|+++++.|.++|+..+.+.+++|++++ | ..++|+||++|++|||++++++|++
T Consensus         1 ~v~ly~~~------~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~-~-~~~~P~~~~~~~~igg~~~~~~~~~   72 (72)
T cd02066           1 KVVVFSKS------TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELS-G-WPTVPQIFINGEFIGGYDDLKALHE   72 (72)
T ss_pred             CEEEEECC------CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHh-C-CCCcCEEEECCEEEecHHHHHHhhC
Confidence            58999999      59999999999999999999999999999999999998 6 8999999999999999999998874

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=99.68  E-value=1.2e-16  Score=122.79  Aligned_cols=89  Identities=22%  Similarity=0.434  Sum_probs=74.0

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhC-------CCcccccEEEECCEEEecch
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG-------GETVTVPRVFIKGRYVGGVD  143 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~-------g~~~tvPqVFI~G~~IGG~d  143 (218)
                      .|.||+||.+|.++.-..++++..||++++|+|+++||++|++.|++|++..+       ++...+||||++++|+|++|
T Consensus         2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye   81 (99)
T PF04908_consen    2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE   81 (99)
T ss_dssp             SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred             EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence            38899999999999999999999999999999999999999999999999882       22555689999999999999


Q ss_pred             hhHhHHHhCcHHHHHh
Q 027825          144 ELTELNESGKLGRMLR  159 (218)
Q Consensus       144 el~~l~e~G~L~~lL~  159 (218)
                      ++.+++|+++|.++|+
T Consensus        82 ~f~ea~E~~~L~~fL~   97 (99)
T PF04908_consen   82 DFEEANENGELEEFLK   97 (99)
T ss_dssp             HHHHHHCTT-HHHHHT
T ss_pred             HHHHHHhhCHHHHHhC
Confidence            9999999999999985

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=99.68  E-value=2.7e-16  Score=114.65  Aligned_cols=72  Identities=28%  Similarity=0.502  Sum_probs=64.5

Q ss_pred             CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      .+.+|+||+++      .|++|.+++++|+++||.|+++||+.+.+. +++++++ | ..++|+|||+|++|||+++|++
T Consensus         6 ~~~~V~ly~~~------~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~-g-~~~vP~i~i~g~~igG~~~l~~   76 (79)
T TIGR02190         6 KPESVVVFTKP------GCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVT-G-ATTVPQVFIGGKLIGGSDELEA   76 (79)
T ss_pred             CCCCEEEEECC------CCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHH-C-CCCcCeEEECCEEEcCHHHHHH
Confidence            46789999999      599999999999999999999999887654 5677777 6 8999999999999999999876


Q ss_pred             H
Q 027825          148 L  148 (218)
Q Consensus       148 l  148 (218)
                      +
T Consensus        77 ~   77 (79)
T TIGR02190        77 Y   77 (79)
T ss_pred             H
Confidence            5

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=99.67  E-value=4e-16  Score=115.85  Aligned_cols=74  Identities=24%  Similarity=0.401  Sum_probs=65.1

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCC-cccccEEEECCEEEecchhh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGE-TVTVPRVFIKGRYVGGVDEL  145 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~-~~tvPqVFI~G~~IGG~del  145 (218)
                      |+||+++      +||+|.+++++|+++     ++.|+++||..+...+++|.++. |. ..++|+|||||++|||++++
T Consensus         2 V~vys~~------~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~-g~~~~tVP~ifi~g~~igG~~dl   74 (86)
T TIGR02183         2 VVIFGRP------GCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTV-GKPVETVPQIFVDEKHVGGCTDF   74 (86)
T ss_pred             EEEEeCC------CCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHh-CCCCCCcCeEEECCEEecCHHHH
Confidence            7999999      599999999999998     46799999987776678898888 52 27999999999999999999


Q ss_pred             HhHHHhC
Q 027825          146 TELNESG  152 (218)
Q Consensus       146 ~~l~e~G  152 (218)
                      .++++++
T Consensus        75 ~~~~~~~   81 (86)
T TIGR02183        75 EQLVKEN   81 (86)
T ss_pred             HHHHHhc
Confidence            9998764

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.66  E-value=5.7e-16  Score=114.01  Aligned_cols=74  Identities=22%  Similarity=0.370  Sum_probs=66.6

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhh-----CCCcEEEEECCCCHHHHHHHHHHhCCC-cccccEEEECCEEEecchh
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV-----NRVVTDERDVSLHGQFLNELKDLLGGE-TVTVPRVFIKGRYVGGVDE  144 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~-----~gV~~~erDVs~d~~~r~eLk~~~~g~-~~tvPqVFI~G~~IGG~de  144 (218)
                      +|+||+++      +|++|.+|+++|++     .+|.|+++||..+...+++|.++. |. ..++|+|||||++|||+++
T Consensus         2 ~v~iy~~~------~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~-~~~~~~vP~ifi~g~~igg~~~   74 (85)
T PRK11200          2 FVVIFGRP------GCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTV-GKPVETVPQIFVDQKHIGGCTD   74 (85)
T ss_pred             EEEEEeCC------CChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHH-CCCCCcCCEEEECCEEEcCHHH
Confidence            58999999      59999999999999     899999999998877788899888 52 3799999999999999999


Q ss_pred             hHhHHHh
Q 027825          145 LTELNES  151 (218)
Q Consensus       145 l~~l~e~  151 (218)
                      +.++++.
T Consensus        75 ~~~~~~~   81 (85)
T PRK11200         75 FEAYVKE   81 (85)
T ss_pred             HHHHHHH
Confidence            9988754

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=5.9e-16  Score=133.67  Aligned_cols=91  Identities=21%  Similarity=0.339  Sum_probs=85.5

Q ss_pred             CCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhH
Q 027825           67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT  146 (218)
Q Consensus        67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~  146 (218)
                      ...++|+||.++. .....|.+.+++..+|++++|+|...||..|++.|+-||+.+ . |+|+|||||+|++|||.|-+.
T Consensus       136 v~a~~v~lFmKG~-p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fS-d-WPTfPQlyI~GEFiGGlDIl~  212 (227)
T KOG0911|consen  136 VKAKPVMLFMKGT-PEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFS-D-WPTFPQLYVKGEFIGGLDILK  212 (227)
T ss_pred             cccCeEEEEecCC-CCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhc-C-CCCccceeECCEeccCcHHHH
Confidence            4678899999995 677789999999999999999999999999999999999998 5 999999999999999999999


Q ss_pred             hHHHhCcHHHHHhh
Q 027825          147 ELNESGKLGRMLRS  160 (218)
Q Consensus       147 ~l~e~G~L~~lL~~  160 (218)
                      +|+++|+|...|++
T Consensus       213 ~m~~~geL~~~l~~  226 (227)
T KOG0911|consen  213 EMHEKGELVYTLKE  226 (227)
T ss_pred             HHhhcccHHHHhhc
Confidence            99999999999875

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=99.62  E-value=2.3e-15  Score=103.81  Aligned_cols=60  Identities=33%  Similarity=0.605  Sum_probs=57.6

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYV  139 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~I  139 (218)
                      |+||+++      +|++|.+++++|+++|++|+++||+.+++.+++|++++ | ..++|+|||||++|
T Consensus         1 V~vy~~~------~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~-g-~~~~P~v~i~g~~I   60 (60)
T PF00462_consen    1 VVVYTKP------GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELS-G-VRTVPQVFIDGKFI   60 (60)
T ss_dssp             EEEEEST------TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHH-S-SSSSSEEEETTEEE
T ss_pred             cEEEEcC------CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHc-C-CCccCEEEECCEEC
Confidence            7899998      69999999999999999999999999999999999998 6 99999999999987

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=99.54  E-value=2.9e-14  Score=133.38  Aligned_cols=86  Identities=20%  Similarity=0.294  Sum_probs=72.9

Q ss_pred             CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHH--------hCCCcccccEEEECCEEEec
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDL--------LGGETVTVPRVFIKGRYVGG  141 (218)
Q Consensus        70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~--------~~g~~~tvPqVFI~G~~IGG  141 (218)
                      .+|+||+++      +||+|.+++++|+++||+|+++||+.++...+.+.+.        + | ..++|||||+|++|||
T Consensus         2 ~~V~vys~~------~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~-g-~~tvP~ifi~~~~igG   73 (410)
T PRK12759          2 VEVRIYTKT------NCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEE-H-IRTVPQIFVGDVHIGG   73 (410)
T ss_pred             CcEEEEeCC------CCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccC-C-CCccCeEEECCEEEeC
Confidence            369999999      5999999999999999999999999887544422222        3 4 7899999999999999


Q ss_pred             chhhHhHHHhCcHHHHHhhhhhhc
Q 027825          142 VDELTELNESGKLGRMLRSARVEM  165 (218)
Q Consensus       142 ~del~~l~e~G~L~~lL~~~~~~~  165 (218)
                      ++++++  .+|+|.++|++.+...
T Consensus        74 f~~l~~--~~g~l~~~~~~~~~~~   95 (410)
T PRK12759         74 YDNLMA--RAGEVIARVKGSSLTT   95 (410)
T ss_pred             chHHHH--HhCCHHHHhcCCcccc
Confidence            999977  8999999998866543

>PRK10329 glutaredoxin-like protein; Provisional

Probab=99.46  E-value=5.5e-13  Score=98.44  Aligned_cols=65  Identities=17%  Similarity=0.226  Sum_probs=60.3

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchh
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDE  144 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~de  144 (218)
                      +|+||+++      +|++|.++|.+|+++||.|+++||+.+++..++++. . | ..++|+|++++..|+|++.
T Consensus         2 ~v~lYt~~------~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~-g-~~~vPvv~i~~~~~~Gf~~   66 (81)
T PRK10329          2 RITIYTRN------DCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-Q-G-FRQLPVVIAGDLSWSGFRP   66 (81)
T ss_pred             EEEEEeCC------CCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c-C-CCCcCEEEECCEEEecCCH
Confidence            69999999      699999999999999999999999999999998876 4 5 8899999999999999974

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=99.44  E-value=4e-13  Score=95.98  Aligned_cols=64  Identities=16%  Similarity=0.356  Sum_probs=58.1

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCE-EEecchh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGR-YVGGVDE  144 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~-~IGG~de  144 (218)
                      |+||+++      +|++|.+++++|+++||.|+++||..+++.++++++ + | ..++|+||++|. +|||++.
T Consensus         1 v~ly~~~------~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~-g-~~~vP~v~~~g~~~~~G~~~   65 (72)
T TIGR02194         1 ITVYSKN------NCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-Q-G-FRQVPVIVADGDLSWSGFRP   65 (72)
T ss_pred             CEEEeCC------CCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c-C-CcccCEEEECCCcEEeccCH
Confidence            6899999      699999999999999999999999999999999876 4 6 789999999775 9999975

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.20  E-value=1.9e-10  Score=79.68  Aligned_cols=66  Identities=24%  Similarity=0.400  Sum_probs=60.3

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchh
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDE  144 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~de  144 (218)
                      +|+||++++      |++|.+++.+|+..++.|.++|++.+.+..+++.+.. | ..++|.++++|+.++|++.
T Consensus         1 ~i~lf~~~~------C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~-~-~~~vP~~~~~~~~~~g~~~   66 (74)
T TIGR02196         1 KVKVYTTPW------CPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVL-G-QRGVPVIVIGHKIIVGFDP   66 (74)
T ss_pred             CEEEEcCCC------ChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHh-C-CCcccEEEECCEEEeeCCH
Confidence            488999995      9999999999999999999999999988888888888 6 8899999999999999854

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=99.13  E-value=4.9e-10  Score=77.53  Aligned_cols=66  Identities=27%  Similarity=0.392  Sum_probs=60.6

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchh
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDE  144 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~de  144 (218)
                      +|++|+++      +|++|.+++.+|+..++.|..+|++.+....++++++. + ..++|+|+++|+.|+|++.
T Consensus         1 ~v~l~~~~------~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~-~-~~~vP~i~~~~~~i~g~~~   66 (73)
T cd02976           1 EVTVYTKP------DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLN-G-YRSVPVVVIGDEHLSGFRP   66 (73)
T ss_pred             CEEEEeCC------CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHc-C-CcccCEEEECCEEEecCCH
Confidence            48999999      59999999999999999999999999988889998886 5 7899999999999999975

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.91  E-value=1.7e-08  Score=71.19  Aligned_cols=66  Identities=15%  Similarity=0.254  Sum_probs=56.4

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE-CCEEEecch
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI-KGRYVGGVD  143 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~d  143 (218)
                      +|+||++++      |++|.+++.+|+.+++.|+.+|+..+....++++++. .+..++|+|++ +|+.+....
T Consensus         1 ~v~ly~~~~------C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~-~~~~~vP~i~~~~g~~l~~~~   67 (77)
T TIGR02200         1 TITVYGTTW------CGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVN-NGNMTVPTVKFADGSFLTNPS   67 (77)
T ss_pred             CEEEEECCC------ChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHh-CCCceeCEEEECCCeEecCCC
Confidence            489999995      9999999999999999999999999988888888875 23889999976 567776554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>KOG4023 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=6.9e-09  Score=79.69  Aligned_cols=93  Identities=18%  Similarity=0.245  Sum_probs=82.2

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhC-------CCcccccEEEECCEEEecch
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLG-------GETVTVPRVFIKGRYVGGVD  143 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~-------g~~~tvPqVFI~G~~IGG~d  143 (218)
                      .|.+|++|.+|...+-..-..+..+|+...|.|+++||.+..+.+.++....+       | .+..||||-+++|.|+||
T Consensus         3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~G-nplPPqifn~d~Y~Gdye   81 (108)
T KOG4023|consen    3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNG-NPLPPQIFNGDQYCGDYE   81 (108)
T ss_pred             ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCC-CCCCcccccCccccccHH
Confidence            47899999999888888888999999999999999999998888877766543       4 678899999999999999


Q ss_pred             hhHhHHHhCcHHHHHhhhhhh
Q 027825          144 ELTELNESGKLGRMLRSARVE  164 (218)
Q Consensus       144 el~~l~e~G~L~~lL~~~~~~  164 (218)
                      .+.+..|++-|.+.|.-++..
T Consensus        82 ~F~ea~E~ntl~eFL~lap~~  102 (108)
T KOG4023|consen   82 LFFEAVEQNTLQEFLGLAPPP  102 (108)
T ss_pred             HHHHHHHHHHHHHHHccCCCc
Confidence            999999999999999877654

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.72  E-value=4.1e-08  Score=68.26  Aligned_cols=59  Identities=15%  Similarity=0.254  Sum_probs=49.1

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEec
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGG  141 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG  141 (218)
                      +|++|++++      |++|.+++.+|+..     ++.|..+|++.+.+    +.+.. | ..++|+|+|+|++++-
T Consensus         2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~-~-i~~vPti~i~~~~~~~   65 (67)
T cd02973           2 NIEVFVSPT------CPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEY-G-VMSVPAIVINGKVEFV   65 (67)
T ss_pred             EEEEEECCC------CCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHc-C-CcccCEEEECCEEEEe
Confidence            589999994      99999999999875     68999999987754    55555 5 7899999999998763

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=98.63  E-value=2.7e-07  Score=66.41  Aligned_cols=70  Identities=13%  Similarity=0.070  Sum_probs=57.3

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEEC--CEEEecchhhHhHH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIK--GRYVGGVDELTELN  149 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~--G~~IGG~del~~l~  149 (218)
                      ++||+.+      .|++|.+|+.+|+.+||+|+++|+..+....+++.+.. + ..++|.+..+  |..+.+...|.+..
T Consensus         2 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~~~l~es~~I~~yL   73 (77)
T cd03041           2 LELYEFE------GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKG-G-KVQVPYLVDPNTGVQMFESADIVKYL   73 (77)
T ss_pred             ceEecCC------CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhC-C-CCcccEEEeCCCCeEEEcHHHHHHHH
Confidence            6799998      59999999999999999999999987766678888775 4 7899999763  56677777665543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=98.54  E-value=7.5e-07  Score=63.48  Aligned_cols=67  Identities=16%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEEC----CEEEecchhhH
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIK----GRYVGGVDELT  146 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~----G~~IGG~del~  146 (218)
                      +|.||+..      .|++|.+++.+|+.+||.|++++++.  ..+.+++ .. + ..++|+++++    |..|.....+.
T Consensus         1 ~i~Ly~~~------~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~-~~-~-~~~vP~l~~~~~~~~~~l~eS~~I~   69 (77)
T cd03040           1 KITLYQYK------TCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK-WS-S-YKKVPILRVESGGDGQQLVDSSVII   69 (77)
T ss_pred             CEEEEEcC------CCHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH-Hh-C-CCccCEEEECCCCCccEEEcHHHHH
Confidence            58899998      59999999999999999999999854  3345553 34 4 7899999987    67777777766


Q ss_pred             hH
Q 027825          147 EL  148 (218)
Q Consensus       147 ~l  148 (218)
                      +.
T Consensus        70 ~y   71 (77)
T cd03040          70 ST   71 (77)
T ss_pred             HH
Confidence            54

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=98.44  E-value=1.1e-06  Score=61.70  Aligned_cols=68  Identities=10%  Similarity=0.211  Sum_probs=54.0

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEEC-CEEEecchhhHhHHH
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIK-GRYVGGVDELTELNE  150 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~del~~l~e  150 (218)
                      .||+..      .|++|.++|.+|..+|++|+++++..+... .. .+.. + ..++|.|+++ |..+++...+.+..+
T Consensus         2 ~Ly~~~------~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~~-~~~~-~-~~~vP~L~~~~~~~l~es~aI~~yL~   70 (71)
T cd03037           2 KLYIYE------HCPFCVKARMIAGLKNIPVEQIILQNDDEA-TP-IRMI-G-AKQVPILEKDDGSFMAESLDIVAFID   70 (71)
T ss_pred             ceEecC------CCcHhHHHHHHHHHcCCCeEEEECCCCchH-HH-HHhc-C-CCccCEEEeCCCeEeehHHHHHHHHh
Confidence            578888      599999999999999999999998765322 22 3444 4 6789999997 889999988876543

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.42  E-value=6e-07  Score=60.31  Aligned_cols=68  Identities=19%  Similarity=0.062  Sum_probs=55.3

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l  148 (218)
                      .||+..      .|++|.+++.+|+.++|+|+.++++.+.....++++.. + ..++|.|+++|..+++...+.+.
T Consensus         2 ~ly~~~------~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~P~l~~~~~~~~es~~I~~y   69 (71)
T cd00570           2 KLYYFP------GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALN-P-LGKVPVLEDGGLVLTESLAILEY   69 (71)
T ss_pred             EEEeCC------CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcC-C-CCCCCEEEECCEEEEcHHHHHHH
Confidence            578888      59999999999999999999999876543333567765 4 88999999999999988876544

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.41  E-value=1.5e-06  Score=64.30  Aligned_cols=75  Identities=16%  Similarity=0.169  Sum_probs=59.6

Q ss_pred             CCCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEEC-CEEEecch
Q 027825           65 PPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIK-GRYVGGVD  143 (218)
Q Consensus        65 pp~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~d  143 (218)
                      +|-..+.+.||+..      .|++|.+++.+|+.+|++|+.+++.... ..+++.+.. . ..++|.+.++ |..+....
T Consensus        12 ~~~~~~~~~Ly~~~------~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~n-p-~~~vPvL~~~~g~~l~eS~   82 (89)
T cd03055          12 PPPVPGIIRLYSMR------FCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKN-P-QGKVPALEIDEGKVVYESL   82 (89)
T ss_pred             CCCCCCcEEEEeCC------CCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhC-C-CCCcCEEEECCCCEEECHH
Confidence            34566789999998      6999999999999999999999987543 235566665 4 7789999998 78777777


Q ss_pred             hhHhH
Q 027825          144 ELTEL  148 (218)
Q Consensus       144 el~~l  148 (218)
                      .|.+.
T Consensus        83 aI~~y   87 (89)
T cd03055          83 IICEY   87 (89)
T ss_pred             HHHHh
Confidence            66554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=98.22  E-value=5.6e-06  Score=57.91  Aligned_cols=68  Identities=19%  Similarity=0.163  Sum_probs=53.2

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l  148 (218)
                      ++||+..      +|++|.+++.+|+.+|++|++++++.. ....++++.. . ..++|.+..+|..+.....+.+.
T Consensus         1 ~~ly~~~------~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~y   68 (73)
T cd03059           1 MTLYSGP------DDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDLAELN-P-YGTVPTLVDRDLVLYESRIIMEY   68 (73)
T ss_pred             CEEEECC------CChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHHHhhC-C-CCCCCEEEECCEEEEcHHHHHHH
Confidence            4689888      699999999999999999999988754 2235676765 3 77999998888777666666544

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=98.17  E-value=2.6e-06  Score=66.09  Aligned_cols=45  Identities=18%  Similarity=0.249  Sum_probs=41.2

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      |.||+++      .|++|++++++|+++|+.|+++|+..++..+++|.+++
T Consensus         1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~   45 (111)
T cd03036           1 LKFYEYP------KCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWL   45 (111)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHH
Confidence            5799999      69999999999999999999999998888888888776

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=98.07  E-value=4.8e-06  Score=63.46  Aligned_cols=45  Identities=20%  Similarity=0.218  Sum_probs=40.7

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      |+||+++      +|++|++++++|+++||.|+++||..++...++|++++
T Consensus         1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~   45 (105)
T cd02977           1 ITIYGNP------NCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELL   45 (105)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Confidence            5799999      69999999999999999999999988777778888876

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=98.04  E-value=1.2e-05  Score=64.38  Aligned_cols=45  Identities=20%  Similarity=0.454  Sum_probs=40.6

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      |+||+++      +|++|++++++|+++||.|+++|+..++..+++|++++
T Consensus         2 i~iY~~~------~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l   46 (131)
T PRK01655          2 VTLFTSP------SCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL   46 (131)
T ss_pred             EEEEeCC------CChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence            7899999      69999999999999999999999998887777777664

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=98.03  E-value=1.9e-05  Score=55.63  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=52.1

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEEC-CEEEecchhhHh
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIK-GRYVGGVDELTE  147 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~del~~  147 (218)
                      +||+..      .|++|.+++.+|+.+|++|+.++++... ..++++++. . ..++|.+..+ |..|.....+.+
T Consensus         2 ~ly~~~------~~p~~~rv~~~L~~~gl~~e~~~v~~~~-~~~~~~~~n-p-~~~vP~L~~~~g~~l~eS~aI~~   68 (71)
T cd03060           2 ILYSFR------RCPYAMRARMALLLAGITVELREVELKN-KPAEMLAAS-P-KGTVPVLVLGNGTVIEESLDIMR   68 (71)
T ss_pred             EEEecC------CCcHHHHHHHHHHHcCCCcEEEEeCCCC-CCHHHHHHC-C-CCCCCEEEECCCcEEecHHHHHH
Confidence            689888      4999999999999999999999887642 235677765 4 7899999986 877766655543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=98.00  E-value=1.5e-05  Score=55.41  Aligned_cols=68  Identities=19%  Similarity=0.147  Sum_probs=50.9

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEE-CCEEEecchhhHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFI-KGRYVGGVDELTE  147 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~del~~  147 (218)
                      +.||+..      .|++|.+++.+|..++++|+.++++..  .....++.+.. . ..++|.+.+ +|..+.....+.+
T Consensus         1 ~~Ly~~~------~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~~l~es~aI~~   71 (74)
T cd03051           1 MKLYDSP------TAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKN-P-AGTVPVLELDDGTVITESVAICR   71 (74)
T ss_pred             CEEEeCC------CCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhC-C-CCCCCEEEeCCCCEEecHHHHHH
Confidence            3689988      599999999999999999998887643  23346677765 4 789999997 5555555555433

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=97.96  E-value=2.2e-05  Score=55.96  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=56.0

Q ss_pred             EEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           74 IYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        74 lYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      ||...      .|++|++++.+|+.+||.|+.+++..... ..++.++. + ..++|.+..+|..|.+...|.+..
T Consensus         1 Ly~~~------~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~-p-~~~vPvL~~~g~~l~dS~~I~~yL   67 (75)
T PF13417_consen    1 LYGFP------GSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLN-P-KGKVPVLVDDGEVLTDSAAIIEYL   67 (75)
T ss_dssp             EEEET------TSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHS-T-TSBSSEEEETTEEEESHHHHHHHH
T ss_pred             CCCcC------CChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhc-c-cccceEEEECCEEEeCHHHHHHHH
Confidence            57777      59999999999999999999999876543 67777776 4 889999999999999888876553

...

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.94  E-value=3.1e-05  Score=54.32  Aligned_cols=68  Identities=18%  Similarity=0.161  Sum_probs=53.1

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCC--CHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL--HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~--d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      +.||+..      .|++|++++.+|+.+|++|+.++++.  .....+++.+.. . ..++|.+.++|..+-....+.+
T Consensus         1 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~   70 (74)
T cd03045           1 IDLYYLP------GSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLN-P-QHTVPTLVDNGFVLWESHAILI   70 (74)
T ss_pred             CEEEeCC------CCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhC-c-CCCCCEEEECCEEEEcHHHHHH
Confidence            3689988      59999999999999999999988864  334457777765 3 6789999888876666555544

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.94  E-value=0.0001  Score=53.92  Aligned_cols=53  Identities=19%  Similarity=0.340  Sum_probs=43.9

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECC
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKG  136 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G  136 (218)
                      +|++|++.      +|.-|..++.+|+..    ++.++++||..|++    |.++.   ...+|+++++|
T Consensus         1 ~l~l~~k~------~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y---~~~IPVl~~~~   57 (81)
T PF05768_consen    1 TLTLYTKP------GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKY---GYRIPVLHIDG   57 (81)
T ss_dssp             -EEEEE-S------SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHS---CTSTSEEEETT
T ss_pred             CEEEEcCC------CCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHh---cCCCCEEEEcC
Confidence            58999999      799999999999964    46799999998865    66676   46899999999

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=97.90  E-value=2.9e-05  Score=60.51  Aligned_cols=45  Identities=24%  Similarity=0.425  Sum_probs=41.1

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      |.||+.+      +|++|++++++|+++||.|+++|+..++..+++|.+++
T Consensus         1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~   45 (117)
T TIGR01617         1 IKVYGSP------NCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDIL   45 (117)
T ss_pred             CEEEeCC------CCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHH
Confidence            5799999      69999999999999999999999999888888887776

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.88  E-value=0.0001  Score=52.37  Aligned_cols=55  Identities=20%  Similarity=0.273  Sum_probs=42.8

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhh----CC--CcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV----NR--VVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGR  137 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~----~g--V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~  137 (218)
                      +|+||+++|      |++|..++.+|+.    ++  +.+..+|+..+.+.    .+.. | ..++|.++++|+
T Consensus         2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~----~~~~-~-v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTSPT------CPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK----AMEY-G-IMAVPAIVINGD   62 (82)
T ss_pred             EEEEEECCC------CcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH----HHHc-C-CccCCEEEECCE
Confidence            488999995      9999999999864    33  66788888776543    3344 5 788999999997

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=97.87  E-value=3.7e-05  Score=59.87  Aligned_cols=45  Identities=22%  Similarity=0.465  Sum_probs=40.7

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      |.||+++      +|++|++++++|+++||.|+++|+..++.-+++|++++
T Consensus         2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~   46 (115)
T cd03032           2 IKLYTSP------SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEIL   46 (115)
T ss_pred             EEEEeCC------CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHH
Confidence            6799999      69999999999999999999999988877777877776

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.84  E-value=6.8e-05  Score=52.10  Aligned_cols=68  Identities=16%  Similarity=0.211  Sum_probs=53.1

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      +.||+..      .|++|.+++.+|+.+|++|++++++..  ....+++.+.. . ..++|.+..+|..|.....+.+
T Consensus         1 ~~Ly~~~------~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~i~es~aI~~   70 (73)
T cd03056           1 MKLYGFP------LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALN-P-NGEVPVLELDGRVLAESNAILV   70 (73)
T ss_pred             CEEEeCC------CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhC-C-CCCCCEEEECCEEEEcHHHHHH
Confidence            3688888      589999999999999999999998742  33456677765 3 7789999999887766665543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=97.75  E-value=5e-05  Score=60.97  Aligned_cols=45  Identities=18%  Similarity=0.384  Sum_probs=38.0

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      |+||+.+      .|+.|++++++|+++||.|+++|+..++-.+++|.+++
T Consensus         2 i~iY~~~------~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l   46 (132)
T PRK13344          2 IKIYTIS------SCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL   46 (132)
T ss_pred             EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence            7899999      69999999999999999999999987665555555543

>PRK12559 transcriptional regulator Spx; Provisional

Probab=97.74  E-value=5.5e-05  Score=60.68  Aligned_cols=45  Identities=29%  Similarity=0.565  Sum_probs=38.9

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      |+||+.+      .|+.|++++++|+++||.|+++|+..++-..++|++++
T Consensus         2 i~iY~~~------~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l   46 (131)
T PRK12559          2 VVLYTTA------SCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSIL   46 (131)
T ss_pred             EEEEeCC------CChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHH
Confidence            7899999      69999999999999999999999987766666665554

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=97.67  E-value=6e-05  Score=58.18  Aligned_cols=45  Identities=18%  Similarity=0.237  Sum_probs=39.8

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      |+||+.+      +|+.|++++++|+++|+.|+++|+..++--.+||++++
T Consensus         1 i~iy~~~------~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l   45 (105)
T cd03035           1 ITLYGIK------NCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWL   45 (105)
T ss_pred             CEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHH
Confidence            5799999      69999999999999999999999988776677777765

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=97.63  E-value=8.3e-05  Score=58.24  Aligned_cols=46  Identities=13%  Similarity=0.236  Sum_probs=40.1

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      .|+||+.+      .|+.|++++++|+++|+.|+++|+..++--+++|++++
T Consensus         1 ~i~iy~~p------~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l   46 (113)
T cd03033           1 DIIFYEKP------GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFF   46 (113)
T ss_pred             CEEEEECC------CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHH
Confidence            37899999      79999999999999999999999987766667776665

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins

Probab=97.62  E-value=0.00048  Score=48.36  Aligned_cols=60  Identities=13%  Similarity=0.172  Sum_probs=49.3

Q ss_pred             CCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825           81 GVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE  150 (218)
Q Consensus        81 giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e  150 (218)
                      ++...|++|.+++.+|+.+|++|+.+++....        .  .....+|.+.++|+.+.+...+.+..+
T Consensus        11 ~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~--~p~g~vP~l~~~g~~l~es~~I~~yL~   70 (72)
T cd03054          11 GLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------R--SPTGKLPFLELNGEKIADSEKIIEYLK   70 (72)
T ss_pred             CCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------c--CCCcccCEEEECCEEEcCHHHHHHHHh
Confidence            44557999999999999999999999997642        2  236789999999999998888776544

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=97.60  E-value=0.00018  Score=53.79  Aligned_cols=59  Identities=19%  Similarity=0.374  Sum_probs=46.5

Q ss_pred             CcEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEe
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVG  140 (218)
Q Consensus        70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IG  140 (218)
                      =.|.+|+++      +|++|..++.+++..     +|.|..+|++..++    +.+.. | ...+|.++|||+.++
T Consensus        14 v~i~~F~~~------~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~-~-V~~vPt~vidG~~~~   77 (89)
T cd03026          14 INFETYVSL------SCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEER-G-IMSVPAIFLNGELFG   77 (89)
T ss_pred             EEEEEEECC------CCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHc-C-CccCCEEEECCEEEE
Confidence            358999998      599999998888665     68899999986643    33344 5 888999999997765

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.57  E-value=0.00038  Score=49.09  Aligned_cols=69  Identities=14%  Similarity=0.046  Sum_probs=50.5

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l  148 (218)
                      +.||+..      .+++|.+++.+|+.+|++|++++++.. ....+++++. ....++|.+..+|..+.....+.+.
T Consensus         1 ~~Ly~~~------~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~-p~~~~vP~l~~~~~~l~eS~aI~~y   69 (74)
T cd03058           1 VKLLGAW------ASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASN-PVHKKIPVLLHNGKPICESLIIVEY   69 (74)
T ss_pred             CEEEECC------CCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhC-CCCCCCCEEEECCEEeehHHHHHHH
Confidence            3678777      589999999999999999999887654 2234555654 2137899998888766666655444

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,

>PHA02125 thioredoxin-like protein

Probab=97.53  E-value=0.00047  Score=49.38  Aligned_cols=55  Identities=11%  Similarity=0.178  Sum_probs=39.5

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYV  139 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~I  139 (218)
                      |++|+++|      |+.|+.++.+|++..+.|..+|.+.+.    ++.+.. + ...+|.+. +|+.+
T Consensus         2 iv~f~a~w------C~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~-~-v~~~PT~~-~g~~~   56 (75)
T PHA02125          2 IYLFGAEW------CANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKH-H-IRSLPTLV-NTSTL   56 (75)
T ss_pred             EEEEECCC------CHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHc-C-CceeCeEE-CCEEE
Confidence            78999995      999999999998765445445544443    455555 5 88999976 66543

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=97.45  E-value=0.00068  Score=47.71  Aligned_cols=70  Identities=14%  Similarity=-0.031  Sum_probs=54.0

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      +.||+..      .+++|.+++-+|...|++|+.+.++...  ...+++++.. . ...+|.+..+|..|.....+.+..
T Consensus         2 ~~Ly~~~------~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-P-~~~vP~l~~~g~~l~es~aI~~yL   73 (76)
T cd03053           2 LKLYGAA------MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARN-P-FGQIPALEDGDLKLFESRAITRYL   73 (76)
T ss_pred             eEEEeCC------CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhC-C-CCCCCEEEECCEEEEcHHHHHHHH
Confidence            5788888      5899999999999999999998876532  2335666665 3 788999988888777776665554

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.38  E-value=0.0007  Score=48.80  Aligned_cols=54  Identities=22%  Similarity=0.380  Sum_probs=41.2

Q ss_pred             EEEEEeecCCCCCCChHHHHH----HHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRV----RSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYV  139 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~v----r~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~I  139 (218)
                      |.+|+ +|      |+.|+.+    +++++++++.++.++|+..    +++.+ . | ..++|.|+|||+.+
T Consensus         3 i~~~a-~~------C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~----~~a~~-~-~-v~~vPti~i~G~~~   60 (76)
T TIGR00412         3 IQIYG-TG------CANCQMTEKNVKKAVEELGIDAEFEKVTDM----NEILE-A-G-VTATPGVAVDGELV   60 (76)
T ss_pred             EEEEC-CC------CcCHHHHHHHHHHHHHHcCCCeEEEEeCCH----HHHHH-c-C-CCcCCEEEECCEEE
Confidence            56666 74      9999999    6688889999999999832    22333 3 5 89999999999665

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=97.35  E-value=0.00061  Score=48.65  Aligned_cols=69  Identities=19%  Similarity=0.158  Sum_probs=53.2

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l  148 (218)
                      ++||...      .++.|.+++-+|+.+|++|+.+++....  ....++.++. . ..++|.+..+|..+.....|.+.
T Consensus         1 ~~ly~~~------~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~in-P-~g~vP~L~~~g~~l~Es~aI~~y   71 (73)
T cd03052           1 LVLYHWT------QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLN-P-TGEVPVLIHGDNIICDPTQIIDY   71 (73)
T ss_pred             CEEecCC------CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhC-c-CCCCCEEEECCEEEEcHHHHHHH
Confidence            4688888      5899999999999999999988876532  2345677775 3 78999999888877766665543

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.32  E-value=0.0013  Score=47.27  Aligned_cols=47  Identities=19%  Similarity=0.386  Sum_probs=34.9

Q ss_pred             CChHHHHHHH----HHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEE
Q 027825           85 TYEDCNRVRS----TFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRY  138 (218)
Q Consensus        85 tc~~C~~vr~----iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~  138 (218)
                      +|++|..+.+    ++..+++.++..|+. +   .+++ ... | ..++|.++|||+.
T Consensus         9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~~-~---~~~~-~~y-g-v~~vPalvIng~~   59 (76)
T PF13192_consen    9 GCPYCPELVQLLKEAAEELGIEVEIIDIE-D---FEEI-EKY-G-VMSVPALVINGKV   59 (76)
T ss_dssp             SCTTHHHHHHHHHHHHHHTTEEEEEEETT-T---HHHH-HHT-T--SSSSEEEETTEE
T ss_pred             CCCCcHHHHHHHHHHHHhcCCeEEEEEcc-C---HHHH-HHc-C-CCCCCEEEECCEE
Confidence            5999997766    556679999999983 3   2344 344 6 9999999999974

...

>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.31  E-value=0.0013  Score=46.57  Aligned_cols=69  Identities=9%  Similarity=0.004  Sum_probs=53.6

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      ++||...      .++.|.+++.+|...|++|+.+.++.+ .+.++++... . ..++|.+..+|..|.....+.+..
T Consensus         2 ~~Ly~~~------~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~yL   70 (73)
T cd03076           2 YTLTYFP------VRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKM-L-FGQLPCFKDGDLTLVQSNAILRHL   70 (73)
T ss_pred             cEEEEeC------CcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccC-C-CCCCCEEEECCEEEEcHHHHHHHH
Confidence            5788877      378999999999999999999988763 4455666654 2 678999999998877777665543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w

>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]

Probab=97.29  E-value=0.00084  Score=60.80  Aligned_cols=86  Identities=19%  Similarity=0.257  Sum_probs=66.1

Q ss_pred             CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      ..=+++||--.      |||||.+||++|+=+||.|..+.|.  +-.|+|++=-+   ...||.+.|+|+-+-...-|..
T Consensus        87 s~L~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk~Ss---ykKVPil~~~Geqm~dSsvIIs  155 (370)
T KOG3029|consen   87 SPLDLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIKWSS---YKKVPILLIRGEQMVDSSVIIS  155 (370)
T ss_pred             CCceEEEEeec------cCchHHHHHHHHhhcCCceEEEEec--chhhhhccccc---cccccEEEeccceechhHHHHH
Confidence            33579999988      8999999999999999999887774  55677776433   8889999999986666655555


Q ss_pred             HH------HhCcHHHHHhhhhhh
Q 027825          148 LN------ESGKLGRMLRSARVE  164 (218)
Q Consensus       148 l~------e~G~L~~lL~~~~~~  164 (218)
                      +.      ....|+++.+..|+.
T Consensus       156 ~laTyLq~~~q~l~eiiq~yPa~  178 (370)
T KOG3029|consen  156 LLATYLQDKRQDLGEIIQMYPAT  178 (370)
T ss_pred             HHHHHhccCCCCHHHHHHhcccc
Confidence            44      345677777777754

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.25  E-value=0.00091  Score=46.42  Aligned_cols=67  Identities=19%  Similarity=0.214  Sum_probs=50.3

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      .||+..      .++.|.+++.+|+.+|++|+.+.+++..  ....++++.. . ...+|.+..+|..+.....+.+
T Consensus         2 ~L~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~   70 (73)
T cd03042           2 ILYSYF------RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALN-P-QGLVPTLVIDGLVLTQSLAIIE   70 (73)
T ss_pred             EEecCC------CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhC-C-CCCCCEEEECCEEEEcHHHHHH
Confidence            567666      4788999999999999999998886532  2346677765 3 7899999988887766555543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=97.21  E-value=0.0026  Score=48.21  Aligned_cols=76  Identities=17%  Similarity=0.245  Sum_probs=55.3

Q ss_pred             EEEEEeecCCC--CCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           72 VVIYTTSLRGV--RRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        72 VVlYttsl~gi--R~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      +-+|.+.-++.  ...|++|++++-+|..+||.|+..+|++... -+++.++.+  ...+|.+..+|..|...+.+.+..
T Consensus         6 ~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP--~g~vPvL~~~~~~i~eS~~I~eYL   82 (91)
T cd03061           6 IELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAP--GTQPPFLLYNGEVKTDNNKIEEFL   82 (91)
T ss_pred             EEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCC--CCCCCEEEECCEEecCHHHHHHHH
Confidence            55565543321  2469999999999999999999988875431 245667652  678999998888888777776654


Q ss_pred             H
Q 027825          150 E  150 (218)
Q Consensus       150 e  150 (218)
                      +
T Consensus        83 d   83 (91)
T cd03061          83 E   83 (91)
T ss_pred             H
Confidence            3

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha

Probab=97.17  E-value=0.0017  Score=45.38  Aligned_cols=68  Identities=12%  Similarity=0.066  Sum_probs=50.5

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l  148 (218)
                      +||...      .++.|.+++.+|+.+|++|+.++++.......++.+..  ...++|.+..+|..|.....+.+.
T Consensus         2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~--p~~~vP~L~~~~~~l~es~aI~~y   69 (72)
T cd03039           2 KLTYFN------IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTL--PFGQLPVLEIDGKKLTQSNAILRY   69 (72)
T ss_pred             EEEEEc------CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCC--cCCCCCEEEECCEEEEecHHHHHH
Confidence            577776      47899999999999999999999875432223344443  378899999888877766665443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma

>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=97.09  E-value=0.0023  Score=45.83  Aligned_cols=68  Identities=15%  Similarity=0.088  Sum_probs=50.6

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEEC---CEEEecchhhH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIK---GRYVGGVDELT  146 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~---G~~IGG~del~  146 (218)
                      +.||...      . ++|.+++.+|+..|++|+.+.+...  ....+++.+.. . ...+|.+..+   |..|.....|.
T Consensus         2 ~~Ly~~~------~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~g~~l~eS~aI~   72 (81)
T cd03048           2 ITLYTHG------T-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKIN-P-NGRIPAIVDHNGTPLTVFESGAIL   72 (81)
T ss_pred             eEEEeCC------C-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhC-c-CCCCCEEEeCCCCceEEEcHHHHH
Confidence            5788876      4 9999999999999999988777642  34456777765 3 7889999887   66666555554


Q ss_pred             hH
Q 027825          147 EL  148 (218)
Q Consensus       147 ~l  148 (218)
                      +.
T Consensus        73 ~y   74 (81)
T cd03048          73 LY   74 (81)
T ss_pred             HH
Confidence            43

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and

>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.02  E-value=0.0019  Score=45.17  Aligned_cols=66  Identities=12%  Similarity=-0.012  Sum_probs=48.4

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhh--CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE-CCEEEecchhhHh
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEV--NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI-KGRYVGGVDELTE  147 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~--~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~del~~  147 (218)
                      .||+..      .+++|.+++.+|+.  .|++|+.+.+... ....++.+.. . ..++|.+.. +|..+.....+.+
T Consensus         2 ~Ly~~~------~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~-p-~~~vP~l~~~~g~~l~es~aI~~   70 (73)
T cd03049           2 KLLYSP------TSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVN-P-LGKIPALVLDDGEALFDSRVICE   70 (73)
T ss_pred             EEecCC------CCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhC-C-CCCCCEEEECCCCEEECHHHHHh
Confidence            578777      58999999999999  8999999988642 2234555654 3 788999975 6766665555543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=97.00  E-value=0.0011  Score=52.46  Aligned_cols=46  Identities=20%  Similarity=0.216  Sum_probs=39.1

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      .|.||..+      .|.-|+++++.|+++||.|.++|+..++--+++|++++
T Consensus         2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l   47 (117)
T COG1393           2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL   47 (117)
T ss_pred             eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence            38999999      69999999999999999999999976665566666554

>PRK10387 glutaredoxin 2; Provisional

Probab=96.97  E-value=0.0031  Score=52.45  Aligned_cols=70  Identities=13%  Similarity=0.233  Sum_probs=52.7

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE-EECCEEEecchhhHhHHH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV-FIKGRYVGGVDELTELNE  150 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV-FI~G~~IGG~del~~l~e  150 (218)
                      +.||+..      .||+|.+|+-+|+.+||+|+.++++..... .. .+.. + ..++|.| ..+|..|.....|.+..+
T Consensus         1 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~-p-~~~VPvL~~~~g~~l~eS~aI~~yL~   70 (210)
T PRK10387          1 MKLYIYD------HCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMI-G-QKQVPILQKDDGSYMPESLDIVHYID   70 (210)
T ss_pred             CEEEeCC------CCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhc-C-CcccceEEecCCeEecCHHHHHHHHH
Confidence            4688877      599999999999999999999998654322 22 2343 3 6799999 567888888877766654


Q ss_pred             h
Q 027825          151 S  151 (218)
Q Consensus       151 ~  151 (218)
                      +
T Consensus        71 ~   71 (210)
T PRK10387         71 E   71 (210)
T ss_pred             H
Confidence            3

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=96.97  E-value=0.0013  Score=51.36  Aligned_cols=45  Identities=13%  Similarity=0.159  Sum_probs=38.7

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      |.||+.+      +|.-|++++++|+++|+.|+++|+..++--.++|.+++
T Consensus         1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l   45 (114)
T TIGR00014         1 VTIYHNP------RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIF   45 (114)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHH
Confidence            5799999      79999999999999999999999987665566666665

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=96.95  E-value=0.0013  Score=50.97  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=37.0

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      |+||+.+      +|.-|++++++|+++++.|+++|+..++--.++|.+++
T Consensus         1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l   45 (112)
T cd03034           1 ITIYHNP------RCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL   45 (112)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence            5799999      79999999999999999999999976654455555443

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>TIGR02182 GRXB Glutaredoxin, GrxB family

Probab=96.92  E-value=0.0029  Score=53.49  Aligned_cols=68  Identities=15%  Similarity=0.244  Sum_probs=52.2

Q ss_pred             EEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE-ECCEEEecchhhHhHHHh
Q 027825           74 IYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF-IKGRYVGGVDELTELNES  151 (218)
Q Consensus        74 lYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF-I~G~~IGG~del~~l~e~  151 (218)
                      ||+..      .||+|.+|+-+|..+|++|+.+++..+.. ... .+.. . ..++|.+. .+|..|.+...|.+..++
T Consensus         2 Ly~~~------~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~-~~~n-p-~g~vP~l~~~~g~~l~es~~I~~yL~~   70 (209)
T TIGR02182         2 LYIYD------HCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETP-IRMI-G-AKQVPILQKDDGRAMPESLDIVAYFDK   70 (209)
T ss_pred             eecCC------CCChHHHHHHHHHHcCCCeEEEECCCCcc-hhH-HHhc-C-CCCcceEEeeCCeEeccHHHHHHHHHH
Confidence            67777      59999999999999999999999865432 122 3443 3 67899997 788899998888776543

This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=96.88  E-value=0.0019  Score=51.67  Aligned_cols=45  Identities=9%  Similarity=0.206  Sum_probs=36.4

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHH
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDL  121 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~  121 (218)
                      .|+||..+      .|.-|++++++|+++||.|+++|+-.++--+++|+.+
T Consensus         2 ~i~iY~~p------~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~   46 (126)
T TIGR01616         2 TIIFYEKP------GCANNARQKAALKASGHDVEVQDILKEPWHADTLRPY   46 (126)
T ss_pred             eEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHH
Confidence            47899999      7999999999999999999999986554334444443

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>PRK10853 putative reductase; Provisional

Probab=96.85  E-value=0.0016  Score=51.28  Aligned_cols=45  Identities=16%  Similarity=0.233  Sum_probs=38.8

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      |+||..+      .|.-|++++++|+++||.|+++|+-.++--.++|++++
T Consensus         2 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l   46 (118)
T PRK10853          2 VTLYGIK------NCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI   46 (118)
T ss_pred             EEEEcCC------CCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence            6799999      79999999999999999999999977665566666665

>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs

Probab=96.81  E-value=0.0093  Score=42.28  Aligned_cols=68  Identities=12%  Similarity=0.172  Sum_probs=50.5

Q ss_pred             EEEEEeec-CCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           72 VVIYTTSL-RGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        72 VVlYttsl-~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      ++||.... .++...+++|.+|+.+|+..|++|+.+.++..        +..  ...++|.+..+|+.|.....+.+..
T Consensus         2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~--p~g~vPvl~~~g~~l~eS~~I~~yL   70 (75)
T cd03080           2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--------KRS--PKGKLPFIELNGEKIADSELIIDHL   70 (75)
T ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--------cCC--CCCCCCEEEECCEEEcCHHHHHHHH
Confidence            45565542 23344689999999999999999999888641        333  3788999999999888887776543

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele

>PRK10026 arsenate reductase; Provisional

Probab=96.80  E-value=0.0022  Score=52.32  Aligned_cols=46  Identities=11%  Similarity=0.066  Sum_probs=39.3

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      .|.||+.+      .|.-|++++++|+++|+.|+++|+-.++--.+||+.++
T Consensus         3 ~i~iY~~p------~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l   48 (141)
T PRK10026          3 NITIYHNP------ACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLI   48 (141)
T ss_pred             EEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHH
Confidence            58899999      79999999999999999999999977665556666554

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=96.78  E-value=0.0056  Score=47.24  Aligned_cols=54  Identities=15%  Similarity=0.231  Sum_probs=40.4

Q ss_pred             CCcEEEEE-eecCCCCCCChHHHHHHHHHhhCC-----CcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825           69 SDGVVIYT-TSLRGVRRTYEDCNRVRSTFEVNR-----VVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI  134 (218)
Q Consensus        69 ~~kVVlYt-tsl~giR~tc~~C~~vr~iL~~~g-----V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI  134 (218)
                      ...|+||+ ++|      |++|+.++.+|++..     +.|..+|++.++    ++.+.. + ..++|.+++
T Consensus        22 ~~~vvv~f~a~w------C~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~-~-v~~vPt~~i   81 (113)
T cd02975          22 PVDLVVFSSKEG------CQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKY-G-VERVPTTIF   81 (113)
T ss_pred             CeEEEEEeCCCC------CCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHc-C-CCcCCEEEE
Confidence            33476764 564      999999999997643     678899988764    455556 5 889999987

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=96.72  E-value=0.0022  Score=50.48  Aligned_cols=50  Identities=30%  Similarity=0.676  Sum_probs=41.4

Q ss_pred             CCcCCCCCCCcceeeCCCCCCCceeeecCC----ceeccCCcCcCCcccCCCCC
Q 027825          168 GRQACEGCGGARFVPCFDCGGSCKVVLANG----DKQRCGVCNENGLVHCPACS  217 (218)
Q Consensus       168 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~----~~~rC~~CnenGl~~C~~C~  217 (218)
                      ....|..|.|.+...|..|+|+-.+.....    ...+|+.|+=.|.+.|+.|.
T Consensus        40 ~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~   93 (111)
T PLN03165         40 NTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQ   93 (111)
T ss_pred             cCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCC
Confidence            467899999999999999999966654322    26799999999999999995

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=96.69  E-value=0.006  Score=38.42  Aligned_cols=56  Identities=23%  Similarity=0.345  Sum_probs=43.0

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHh-----hCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECC
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFE-----VNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKG  136 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~-----~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G  136 (218)
                      +++|..+      .|++|.+++..|.     ..++.|..+|+.......+.+.. . + ...+|.+++.+
T Consensus         1 l~~~~~~------~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~P~~~~~~   61 (69)
T cd01659           1 LVLFYAP------WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKR-Y-G-VGGVPTLVVFG   61 (69)
T ss_pred             CEEEECC------CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHh-C-C-CccccEEEEEe
Confidence            4567777      4999999999999     67899999999887765554223 2 3 78899998765

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=96.67  E-value=0.0044  Score=44.76  Aligned_cols=66  Identities=21%  Similarity=0.197  Sum_probs=48.3

Q ss_pred             CCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEEC-CEEEecchhhHhHH
Q 027825           81 GVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIK-GRYVGGVDELTELN  149 (218)
Q Consensus        81 giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~del~~l~  149 (218)
                      +.+..+++|.+++.+|..+|++|+.+.++..  .....++ +.. . ...+|.+..+ |..|.+...+.+..
T Consensus        11 ~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~-p-~~~vP~L~~~~~~~l~eS~aI~~yL   79 (84)
T cd03038          11 PVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSG-G-FYTVPVIVDGSGEVIGDSFAIAEYL   79 (84)
T ss_pred             CCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCC-C-CceeCeEEECCCCEEeCHHHHHHHH
Confidence            3456799999999999999999998877643  2223344 333 3 7889999888 78887777766553

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.

>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=96.63  E-value=0.01  Score=41.90  Aligned_cols=69  Identities=14%  Similarity=0.156  Sum_probs=50.2

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l  148 (218)
                      +.||...      ..+.|.+++-+|+..|++|+.+.++..  ....+++.+.. . ...+|.+..+|..|-....+.+.
T Consensus         1 ~~ly~~~------~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~-p-~~~vP~L~~~~~~l~eS~aI~~Y   71 (76)
T cd03050           1 LKLYYDL------MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKIN-P-FGKVPAIVDGDFTLAESVAILRY   71 (76)
T ss_pred             CEEeeCC------CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhC-c-CCCCCEEEECCEEEEcHHHHHHH
Confidence            3578887      578999999999999999998887642  22335666665 3 78999998887666555554433

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.007  Score=44.78  Aligned_cols=66  Identities=17%  Similarity=0.182  Sum_probs=45.0

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHH-HHHHHHH---------hCCCcccccEEEECC-EEEec
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQF-LNELKDL---------LGGETVTVPRVFIKG-RYVGG  141 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~-r~eLk~~---------~~g~~~tvPqVFI~G-~~IGG  141 (218)
                      ++|.+.      .||+|..+.+.|++.+|.|+++||...-.- ++-|+-+         -+.+...+|.+..++ +.|=|
T Consensus         5 ~lfgsn------~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~   78 (85)
T COG4545           5 KLFGSN------LCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG   78 (85)
T ss_pred             eeeccc------cCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence            788888      499999999999999999999999654322 2222111         112277889997655 44433


Q ss_pred             chhh
Q 027825          142 VDEL  145 (218)
Q Consensus       142 ~del  145 (218)
                       +++
T Consensus        79 -~Dl   81 (85)
T COG4545          79 -DDL   81 (85)
T ss_pred             -chh
Confidence             444

>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs

Probab=96.50  E-value=0.011  Score=41.89  Aligned_cols=66  Identities=17%  Similarity=0.022  Sum_probs=50.5

Q ss_pred             CCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH-HHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           80 RGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG-QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        80 ~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~-~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      .+.+..++++.+++-+|+.+|++|+.+.+.... +...++++.. . ...+|.+..+|..|.....+.+
T Consensus         4 ~~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~n-P-~g~vP~L~~~g~~l~eS~aI~~   70 (73)
T cd03043           4 IGNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFS-P-TGKVPVLVDGGIVVWDSLAICE   70 (73)
T ss_pred             EcCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhC-C-CCcCCEEEECCEEEEcHHHHHH
Confidence            455678999999999999999999998886532 2345676665 3 7899999999887766665543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=96.48  E-value=0.0093  Score=42.20  Aligned_cols=67  Identities=12%  Similarity=0.026  Sum_probs=49.3

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH-HHHHHHHHHhCCCcccccEEEEC-CEEEecchhhHh
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG-QFLNELKDLLGGETVTVPRVFIK-GRYVGGVDELTE  147 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~-~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~del~~  147 (218)
                      .||+..      .++.|.+++-+|+..|++|+.++|+... ...++++++.  ...++|.+..+ |..|-....|.+
T Consensus         2 ~Ly~~~------~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~n--P~~~vP~L~~~~g~~l~es~aI~~   70 (75)
T cd03044           2 TLYTYP------GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKF--PLGKVPAFEGADGFCLFESNAIAY   70 (75)
T ss_pred             eEecCC------CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhC--CCCCCCEEEcCCCCEEeeHHHHHH
Confidence            467766      5899999999999999999999887643 2235666765  37899999885 666554444433

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=96.36  E-value=0.027  Score=39.12  Aligned_cols=57  Identities=21%  Similarity=0.346  Sum_probs=41.9

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhh-----CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE--CCEEEe
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEV-----NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRYVG  140 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~-----~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI--~G~~IG  140 (218)
                      +++|+++      .|+.|..+...|++     .++.|..+|++.+.++.+.    . + ...+|.+++  +|+.++
T Consensus        14 ll~~~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~-~-v~~~P~~~~~~~g~~~~   77 (93)
T cd02947          14 VVDFWAP------WCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE----Y-G-VRSIPTFLFFKNGKEVD   77 (93)
T ss_pred             EEEEECC------CChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh----c-C-cccccEEEEEECCEEEE
Confidence            5555555      59999999999988     7888999999876654333    3 4 677899766  776433

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PRK09481 sspA stringent starvation protein A; Provisional

Probab=96.34  E-value=0.016  Score=48.74  Aligned_cols=69  Identities=16%  Similarity=0.151  Sum_probs=54.0

Q ss_pred             CcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      ..+.||+..      .|++|.+++-+|+.+|++|+.+.|+.. ...+++.++.  ...++|.+..+|..|--...|.+
T Consensus         9 ~~~~Ly~~~------~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~n--P~g~VPvL~~~g~~l~ES~AIl~   77 (211)
T PRK09481          9 SVMTLFSGP------TDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLN--PYQSVPTLVDRELTLYESRIIME   77 (211)
T ss_pred             CeeEEeCCC------CChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhC--CCCCCCEEEECCEEeeCHHHHHH
Confidence            358899987      589999999999999999999998753 2335677765  27799999988877665555544

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=96.30  E-value=0.016  Score=43.09  Aligned_cols=55  Identities=16%  Similarity=0.196  Sum_probs=38.0

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHH------hh---CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTF------EV---NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI  134 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL------~~---~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI  134 (218)
                      +|.|+++      +|++|+.....+      ..   .++.+..+|++.+.....++.+.. + ..++|.+++
T Consensus        15 lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~-~-i~~~Pti~~   78 (104)
T cd02953          15 FVDFTAD------WCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRF-G-VFGPPTYLF   78 (104)
T ss_pred             EEEEEcc------hhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHc-C-CCCCCEEEE
Confidence            5566666      499999887433      11   167788889887655556677766 5 888998854

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=96.27  E-value=0.014  Score=40.73  Aligned_cols=68  Identities=10%  Similarity=-0.087  Sum_probs=49.6

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      .||+...       +.+.+++.+|+..|++|+.+.++..  .....++++.. . ...+|.+..+|..|.....+.+..
T Consensus         2 ~l~~~~~-------~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-p-~~~vP~l~~~g~~l~es~aI~~yL   71 (76)
T cd03046           2 TLYHLPR-------SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAIN-P-LGKVPVLVDGDLVLTESAAIILYL   71 (76)
T ss_pred             EEEeCCC-------CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcC-C-CCCCCEEEECCEEEEcHHHHHHHH
Confidence            5776552       4688999999999999998887643  22345566655 3 788999998988877777665543

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=96.05  E-value=0.019  Score=48.98  Aligned_cols=55  Identities=11%  Similarity=0.241  Sum_probs=41.6

Q ss_pred             CcEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECC
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKG  136 (218)
Q Consensus        70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G  136 (218)
                      -.|++|+++|      |++|..++.+|+..     .|.+..+|+..+++.    .+.. | ..++|.++|++
T Consensus       135 v~I~~F~a~~------C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~----~~~~-~-V~~vPtl~i~~  194 (215)
T TIGR02187       135 VRIEVFVTPT------CPYCPYAVLMAHKFALANDKILGEMIEANENPDL----AEKY-G-VMSVPKIVINK  194 (215)
T ss_pred             cEEEEEECCC------CCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHH----HHHh-C-CccCCEEEEec
Confidence            3577789985      99999999988864     466777888777543    3445 5 88999998875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=96.02  E-value=0.017  Score=44.33  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=27.7

Q ss_pred             CChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHh
Q 027825           85 TYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        85 tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~  122 (218)
                      +|.-|++++++|+++||.|+++|+..++--+++|.+++
T Consensus         5 ~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l   42 (110)
T PF03960_consen    5 NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL   42 (110)
T ss_dssp             T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence            79999999999999999999999988665566666554

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=95.97  E-value=0.03  Score=39.21  Aligned_cols=66  Identities=11%  Similarity=-0.000  Sum_probs=49.1

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhH
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT  146 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~  146 (218)
                      .||...      ..+.+.+++.+|+.+|++|+.+++...  ....+++++.. . ..++|.+..+|..|.....+.
T Consensus         2 ~l~~~~------~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~n-P-~~~vP~L~~~~~~l~eS~aI~   69 (73)
T cd03047           2 TIWGRR------SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMN-P-NGRVPVLEDGDFVLWESNAIL   69 (73)
T ss_pred             EEEecC------CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhC-C-CCCCCEEEECCEEEECHHHHH
Confidence            577776      368999999999999999998887642  22345666665 3 789999988887766555543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.

>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=95.96  E-value=0.023  Score=40.02  Aligned_cols=66  Identities=12%  Similarity=0.048  Sum_probs=46.3

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEEC-CEEEecchhhHh
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFIK-GRYVGGVDELTE  147 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI~-G~~IGG~del~~  147 (218)
                      .||+...      + .+.+++.+|..+|+.|+.+++....  ...+++++.. . ...+|.+..+ |..+.....|.+
T Consensus         2 ~Ly~~~~------~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~n-p-~~~vP~l~~~~g~~l~eS~aI~~   70 (77)
T cd03057           2 KLYYSPG------A-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAIN-P-KGQVPALVLDDGEVLTESAAILQ   70 (77)
T ss_pred             EEEeCCC------C-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhC-C-CCCCCEEEECCCcEEEcHHHHHH
Confidence            5777662      3 4788999999999999988776532  2346777765 4 7899999887 665555544433

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.

>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B

Probab=95.93  E-value=0.0088  Score=42.12  Aligned_cols=63  Identities=22%  Similarity=0.135  Sum_probs=46.8

Q ss_pred             ChHHHHHHHHHhhCCCcEEEEECCC---CHHHHHHHHHHhCCCcccccEEEE-CCEEEecchhhHhHHH
Q 027825           86 YEDCNRVRSTFEVNRVVTDERDVSL---HGQFLNELKDLLGGETVTVPRVFI-KGRYVGGVDELTELNE  150 (218)
Q Consensus        86 c~~C~~vr~iL~~~gV~~~erDVs~---d~~~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~del~~l~e  150 (218)
                      ||++.+++-+|+.+|++|+..-+..   +.....++.++. + ..++|.+.. +|+.|.....+.++.+
T Consensus         2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~-p-~~~VP~L~~~~g~vi~eS~~I~~yL~   68 (70)
T PF13409_consen    2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALN-P-RGKVPVLVDPDGTVINESLAILEYLE   68 (70)
T ss_dssp             -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHS-T-T-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred             chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccC-c-CeEEEEEEECCCCEeeCHHHHHHHHh
Confidence            8999999999999999988766522   222225677776 4 789999998 8898888887776654

...

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=95.89  E-value=0.035  Score=41.02  Aligned_cols=57  Identities=21%  Similarity=0.355  Sum_probs=40.4

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhh------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE--CCEEEe
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEV------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRYVG  140 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI--~G~~IG  140 (218)
                      +++|+++      .|+.|..+...|+.      .++.+..+|++.+.++    .+.. + ...+|.+++  +|+.++
T Consensus        17 lv~f~a~------~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l----~~~~-~-v~~vPt~~i~~~g~~v~   81 (97)
T cd02949          17 LVLYTSP------TCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEI----AEAA-G-IMGTPTVQFFKDKELVK   81 (97)
T ss_pred             EEEEECC------CChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHC-C-CeeccEEEEEECCeEEE
Confidence            4455556      59999999988876      4577889999877644    4444 5 778898754  666553

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR00862 O-ClC intracellular chloride channel protein

Probab=95.87  E-value=0.042  Score=48.23  Aligned_cols=76  Identities=14%  Similarity=0.157  Sum_probs=55.7

Q ss_pred             EEEEEeecCCCC--CCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           72 VVIYTTSLRGVR--RTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        72 VVlYttsl~giR--~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      |.||.+....-+  ..|++|++|+-+|..+|++|+.+.|+.... .+++.++.  ...++|.+..+|..|.....|.+..
T Consensus         3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~in--P~g~vPvL~~~g~~l~ES~aI~eYL   79 (236)
T TIGR00862         3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLA--PGTHPPFLTYNTEVKTDVNKIEEFL   79 (236)
T ss_pred             eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHC--cCCCCCEEEECCEEeecHHHHHHHH
Confidence            556665521111  369999999999999999999888876532 35677765  2678999988888888777776665


Q ss_pred             H
Q 027825          150 E  150 (218)
Q Consensus       150 e  150 (218)
                      +
T Consensus        80 ~   80 (236)
T TIGR00862        80 E   80 (236)
T ss_pred             H
Confidence            4

These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=95.79  E-value=0.043  Score=43.15  Aligned_cols=64  Identities=16%  Similarity=0.229  Sum_probs=39.9

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHH----hhCCCcEEEEECCCCH--H-----HHHHHHHHhCC---CcccccEE--EEC
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTF----EVNRVVTDERDVSLHG--Q-----FLNELKDLLGG---ETVTVPRV--FIK  135 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL----~~~gV~~~erDVs~d~--~-----~r~eLk~~~~g---~~~tvPqV--FI~  135 (218)
                      ||.|+.+      +||+|+.+.-+|    +..++.+..+|++.+.  +     -..++.+.. +   ....+|.+  |-+
T Consensus        27 iv~f~~~------~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~-~i~~~i~~~PT~v~~k~   99 (122)
T TIGR01295        27 TFFIGRK------TCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRF-GIPTSFMGTPTFVHITD   99 (122)
T ss_pred             EEEEECC------CChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHc-CCcccCCCCCEEEEEeC
Confidence            5556666      599999965544    5556889999998653  1     123344443 2   13448887  568


Q ss_pred             CEEEecc
Q 027825          136 GRYVGGV  142 (218)
Q Consensus       136 G~~IGG~  142 (218)
                      |+.++..
T Consensus       100 Gk~v~~~  106 (122)
T TIGR01295       100 GKQVSVR  106 (122)
T ss_pred             CeEEEEE
Confidence            8766544

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.45  E-value=0.034  Score=53.43  Aligned_cols=62  Identities=23%  Similarity=0.325  Sum_probs=45.5

Q ss_pred             CCCcEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEec
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGG  141 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG  141 (218)
                      ..-.|.+|.|.      +||+|-.++++++..     .|..+-+|....++    +.+.. + ..+||.+||+|+.++.
T Consensus       117 ~~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~-~-v~~VP~~~i~~~~~~~  183 (515)
T TIGR03140       117 GPLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEAL-G-IQGVPAVFLNGEEFHN  183 (515)
T ss_pred             CCeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhc-C-CcccCEEEECCcEEEe
Confidence            34568999999      799999999988775     45566666655443    33444 4 7799999999977653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.18  E-value=0.046  Score=52.48  Aligned_cols=62  Identities=19%  Similarity=0.330  Sum_probs=46.2

Q ss_pred             CCCcEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEec
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGG  141 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG  141 (218)
                      ..-.|.+|.|.      +||+|-.++++++..     .|..+-+|....++    +.+.. + ..+||.+||+|+.+..
T Consensus       116 ~~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~----~~~~~-~-v~~VP~~~i~~~~~~~  182 (517)
T PRK15317        116 GDFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD----EVEAR-N-IMAVPTVFLNGEEFGQ  182 (517)
T ss_pred             CCeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh----HHHhc-C-CcccCEEEECCcEEEe
Confidence            34568999999      799999999888765     46677777665544    33444 5 7799999999976543

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=95.06  E-value=0.11  Score=39.65  Aligned_cols=63  Identities=16%  Similarity=0.266  Sum_probs=43.1

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEecchh
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGGVDE  144 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IGG~de  144 (218)
                      ||.|+++      .|+.|+.+...|+..     ++.|..+|++.+     +|.+.. + ..++|.+  |-+|+.++-..-
T Consensus        28 vv~F~a~------~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~-~-i~~~Pt~~~f~~G~~v~~~~G   94 (113)
T cd02957          28 VVHFYEP------GFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYL-D-IKVLPTLLVYKNGELIDNIVG   94 (113)
T ss_pred             EEEEeCC------CCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhc-C-CCcCCEEEEEECCEEEEEEec
Confidence            4456666      499999988877652     567788887644     555655 5 7788977  678987765544


Q ss_pred             hHh
Q 027825          145 LTE  147 (218)
Q Consensus       145 l~~  147 (218)
                      ...
T Consensus        95 ~~~   97 (113)
T cd02957          95 FEE   97 (113)
T ss_pred             HHH
Confidence            433

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=94.93  E-value=0.1  Score=37.75  Aligned_cols=59  Identities=22%  Similarity=0.330  Sum_probs=40.4

Q ss_pred             CcEE-EEEeecCCCCCCChHHHHHHHHHhh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825           70 DGVV-IYTTSLRGVRRTYEDCNRVRSTFEV----N--RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG  140 (218)
Q Consensus        70 ~kVV-lYttsl~giR~tc~~C~~vr~iL~~----~--gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG  140 (218)
                      ..++ .|+++      .|+.|+.++..|.+    +  +|.|-.+|.+.+.+    +.+.. + ...+|.+  |-+|+.+.
T Consensus        18 ~~vvv~f~~~------~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~-~-v~~~Pt~~~~~~g~~~~   85 (103)
T PF00085_consen   18 KPVVVYFYAP------WCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKY-G-VKSVPTIIFFKNGKEVK   85 (103)
T ss_dssp             SEEEEEEEST------TSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHT-T-CSSSSEEEEEETTEEEE
T ss_pred             CCEEEEEeCC------CCCccccccceecccccccccccccchhhhhccch----hhhcc-C-CCCCCEEEEEECCcEEE
Confidence            4444 55555      59999999877743    3  48889999987744    44444 5 7888988  45776654

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00051 thioredoxin; Provisional

Probab=94.93  E-value=0.16  Score=36.88  Aligned_cols=57  Identities=19%  Similarity=0.341  Sum_probs=38.4

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhh-----CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEV-----NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG  140 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~-----~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG  140 (218)
                      ++.|+++      +|+.|+.+...|+.     .++.|..+|++....    +.+.. + ...+|.+  |-+|+.++
T Consensus        22 li~f~~~------~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~-~-v~~~Pt~~~~~~g~~~~   85 (98)
T PTZ00051         22 IVDFYAE------WCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKE-N-ITSMPTFKVFKNGSVVD   85 (98)
T ss_pred             EEEEECC------CCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHC-C-CceeeEEEEEeCCeEEE
Confidence            4555666      59999999887766     357788888876543    33334 4 6778876  45775554

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=94.79  E-value=0.072  Score=51.78  Aligned_cols=58  Identities=24%  Similarity=0.292  Sum_probs=44.6

Q ss_pred             CCcEEEEEeecCCCCCCChHHHHHHHHHhh----C-CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEE
Q 027825           69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEV----N-RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRY  138 (218)
Q Consensus        69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~----~-gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~  138 (218)
                      .-.|.+|.++      +|++|-++.+.++.    . +|..+.+|+...++    +.+.. + ..++|.+||||+.
T Consensus       477 ~~~i~v~~~~------~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~----~~~~~-~-v~~vP~~~i~~~~  539 (555)
T TIGR03143       477 PVNIKIGVSL------SCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD----LKDEY-G-IMSVPAIVVDDQQ  539 (555)
T ss_pred             CeEEEEEECC------CCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH----HHHhC-C-ceecCEEEECCEE
Confidence            3468888888      69999988875544    4 79999999987643    44444 5 8899999999964

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15113 glutathione S-transferase; Provisional

Probab=94.74  E-value=0.14  Score=43.17  Aligned_cols=72  Identities=10%  Similarity=0.068  Sum_probs=52.9

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCC--CHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL--HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~--d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l  148 (218)
                      .++||....    .++++|.+|+-+|..+||+|+.+.|..  .....+++.++.  ....||.+.++|..|--...|.+.
T Consensus         5 ~~~Ly~~~~----~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n--P~g~VP~L~~~~~~l~ES~aI~~Y   78 (214)
T PRK15113          5 AITLYSDAH----FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYS--LTRRVPTLQHDDFELSESSAIAEY   78 (214)
T ss_pred             eEEEEeCCC----CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcC--CCCCCCEEEECCEEEecHHHHHHH
Confidence            478998651    037999999999999999999887764  223446777765  378999999988766655555443

>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=94.71  E-value=0.21  Score=35.81  Aligned_cols=66  Identities=18%  Similarity=0.096  Sum_probs=45.2

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHH--HhCCCcccccEEEECCEEEecchhhH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKD--LLGGETVTVPRVFIKGRYVGGVDELT  146 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~--~~~g~~~tvPqVFI~G~~IGG~del~  146 (218)
                      .+||....      .+.|.+++-+|+..|++|+.+.++...++.+ +..  ..  ....+|.+.+||..|...-.+.
T Consensus         2 ~~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~--~~g~vP~L~~~g~~l~ES~AI~   69 (79)
T cd03077           2 PVLHYFNG------RGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSL--MFQQVPMVEIDGMKLVQTRAIL   69 (79)
T ss_pred             CEEEEeCC------CChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCC--CCCCCCEEEECCEEEeeHHHHH
Confidence            46888773      4688899999999999999888865443321 211  11  1458999988887665555443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=94.69  E-value=0.2  Score=38.52  Aligned_cols=57  Identities=18%  Similarity=0.256  Sum_probs=40.3

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhh-----CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEV-----NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG  140 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~-----~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG  140 (218)
                      ||.|+++      .|+.|+.+...|+.     .++.|..+|++...+    +.+.. + ..++|.+  |-+|+.++
T Consensus        26 vV~f~a~------~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~-~-v~~vPt~l~fk~G~~v~   89 (113)
T cd02989          26 VCHFYHP------EFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKL-N-IKVLPTVILFKNGKTVD   89 (113)
T ss_pred             EEEEECC------CCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHC-C-CccCCEEEEEECCEEEE
Confidence            4455556      49999998887755     257899999988764    44444 4 7778877  66887654

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR01262 maiA maleylacetoacetate isomerase

Probab=94.61  E-value=0.06  Score=44.63  Aligned_cols=68  Identities=21%  Similarity=0.142  Sum_probs=50.7

Q ss_pred             EEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC---HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           74 IYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH---GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        74 lYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d---~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      ||+..      +++.+.+++-+|...||+|+.+.++..   .....++++..  ...++|.+.++|..|-....|....
T Consensus         2 Ly~~~------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~ES~aI~~yl   72 (210)
T TIGR01262         2 LYSYW------RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALN--PQGLVPTLDIDGEVLTQSLAIIEYL   72 (210)
T ss_pred             cccCC------CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcC--CCCcCCEEEECCEEeecHHHHHHHH
Confidence            56555      478999999999999999999888741   22235566664  3789999999998877766665543

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.

>PHA02278 thioredoxin-like protein

Probab=94.57  E-value=0.18  Score=38.63  Aligned_cols=63  Identities=13%  Similarity=0.248  Sum_probs=40.8

Q ss_pred             CCcEEE-EEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEE
Q 027825           69 SDGVVI-YTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV  139 (218)
Q Consensus        69 ~~kVVl-Yttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~I  139 (218)
                      .+.|+| |+++      .|+.|+.+..+|+..      .+.+..+||+.+..-..++.+.. + ..++|.+  |-+|+.+
T Consensus        14 ~~~vvV~F~A~------WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~-~-I~~iPT~i~fk~G~~v   85 (103)
T PHA02278         14 KKDVIVMITQD------NCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLF-D-IMSTPVLIGYKDGQLV   85 (103)
T ss_pred             CCcEEEEEECC------CCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHC-C-CccccEEEEEECCEEE
Confidence            344554 5555      599999888776553      25688888886531133455555 4 7788887  5588765

>PRK09381 trxA thioredoxin; Provisional

Probab=94.56  E-value=0.35  Score=36.06  Aligned_cols=59  Identities=8%  Similarity=0.215  Sum_probs=39.8

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE--CCEEEecc
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEV----N--RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRYVGGV  142 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~----~--gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI--~G~~IGG~  142 (218)
                      |+.|+++      .|+.|..+...|+.    +  ++.+-.+|++.+...    .... + ..++|.+++  +|+.++-.
T Consensus        25 vv~f~~~------~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~-~-v~~~Pt~~~~~~G~~~~~~   91 (109)
T PRK09381         25 LVDFWAE------WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKY-G-IRGIPTLLLFKNGEVAATK   91 (109)
T ss_pred             EEEEECC------CCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhC-C-CCcCCEEEEEeCCeEEEEe
Confidence            5555566      59999998766653    2  366788888876544    3344 5 788998854  88776533

>TIGR01068 thioredoxin thioredoxin

Probab=94.51  E-value=0.33  Score=34.78  Aligned_cols=49  Identities=16%  Similarity=0.297  Sum_probs=34.6

Q ss_pred             CChHHHHHHHHHhh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE--CCEEE
Q 027825           85 TYEDCNRVRSTFEV----N--RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRYV  139 (218)
Q Consensus        85 tc~~C~~vr~iL~~----~--gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI--~G~~I  139 (218)
                      .|+.|..+...|+.    +  .+.|-.+|++.+.++    .+.. + ...+|.+++  +|+.+
T Consensus        25 ~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~-~-v~~~P~~~~~~~g~~~   81 (101)
T TIGR01068        25 WCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI----AAKY-G-IRSIPTLLLFKNGKEV   81 (101)
T ss_pred             CCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHc-C-CCcCCEEEEEeCCcEe
Confidence            59999998776654    2  377888898877544    3344 5 788998865  66544

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.46  E-value=0.21  Score=44.05  Aligned_cols=73  Identities=14%  Similarity=0.018  Sum_probs=54.4

Q ss_pred             CCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825           69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l  148 (218)
                      ++.|.||.+-      .|||.++++-.|+.+||+|+.+.++... --+.|.+.. --...+|.+..+|+.|.-.-.+.+.
T Consensus         7 ~~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~n-p~hkKVPvL~Hn~k~i~ESliiveY   78 (231)
T KOG0406|consen    7 DGTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKN-PVHKKVPVLEHNGKPICESLIIVEY   78 (231)
T ss_pred             CCeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhc-cccccCCEEEECCceehhhHHHHHH
Confidence            3679999888      6999999999999999999888876532 113344443 2377899999999987755554444


Q ss_pred             H
Q 027825          149 N  149 (218)
Q Consensus       149 ~  149 (218)
                      .
T Consensus        79 i   79 (231)
T KOG0406|consen   79 I   79 (231)
T ss_pred             H
Confidence            3

>PLN02473 glutathione S-transferase

Probab=94.24  E-value=0.16  Score=42.42  Aligned_cols=70  Identities=16%  Similarity=-0.008  Sum_probs=51.6

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      +.||...      +.+++.+|+-+|..+||+|+.+.+...  .....++.++.  ....+|.+..+|..|.....|.+..
T Consensus         3 ~kLy~~~------~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~g~~l~ES~aI~~YL   74 (214)
T PLN02473          3 VKVYGQI------KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQ--PFGQVPAIEDGDLKLFESRAIARYY   74 (214)
T ss_pred             eEEecCC------CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhC--CCCCCCeEEECCEEEEehHHHHHHH
Confidence            5688776      478999999999999999988766432  23344555554  3779999999998887776666543

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=94.16  E-value=0.069  Score=37.71  Aligned_cols=40  Identities=30%  Similarity=0.691  Sum_probs=25.8

Q ss_pred             cceeeCCCCCCCceeeecC----C---ceeccCCcCcCCccc----CCCCC
Q 027825          178 ARFVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLVH----CPACS  217 (218)
Q Consensus       178 ~rfv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~~----C~~C~  217 (218)
                      .....|+.|+|+-.++...    .   ....|+.|+=.|.+.    |+.|.
T Consensus        13 ~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~   63 (66)
T PF00684_consen   13 KKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCK   63 (66)
T ss_dssp             TT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSST
T ss_pred             CCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCC
Confidence            3447899999997776543    1   278899999998875    88774

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=94.11  E-value=0.31  Score=36.28  Aligned_cols=66  Identities=15%  Similarity=0.181  Sum_probs=35.8

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhh-------C--CCcEEEEECCCCHH----------------HHHHHHHHhCCC
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV-------N--RVVTDERDVSLHGQ----------------FLNELKDLLGGE  125 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~-------~--gV~~~erDVs~d~~----------------~r~eLk~~~~g~  125 (218)
                      .|++|++.      .|++|+++...+..       .  ++.+...++..+..                ...+|.... | 
T Consensus         8 ~v~~F~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-   79 (112)
T PF13098_consen    8 IVVVFTDP------WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRY-G-   79 (112)
T ss_dssp             EEEEEE-T------T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHT-T-
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHc-C-
Confidence            35555555      69999988766552       1  34566666654432                224566666 6 


Q ss_pred             cccccEEE-EC--CE---EEecchh
Q 027825          126 TVTVPRVF-IK--GR---YVGGVDE  144 (218)
Q Consensus       126 ~~tvPqVF-I~--G~---~IGG~de  144 (218)
                      ...+|.++ +|  |+   .+-|+-.
T Consensus        80 v~gtPt~~~~d~~G~~v~~~~G~~~  104 (112)
T PF13098_consen   80 VNGTPTIVFLDKDGKIVYRIPGYLS  104 (112)
T ss_dssp             --SSSEEEECTTTSCEEEEEESS--
T ss_pred             CCccCEEEEEcCCCCEEEEecCCCC
Confidence            77889885 44  65   4556543

...

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=94.10  E-value=0.29  Score=38.54  Aligned_cols=57  Identities=12%  Similarity=0.199  Sum_probs=40.7

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhC-----C-CcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN-----R-VVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG  140 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~-----g-V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG  140 (218)
                      ||-|+.+|      |+.|+.+.-+|++.     + +.|-.+|++.+++    |.+.. + ..++|.+  |-+|+.++
T Consensus        18 VV~F~A~W------CgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~-~-V~~iPTf~~fk~G~~v~   82 (114)
T cd02954          18 VIRFGRDW------DPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMY-E-LYDPPTVMFFFRNKHMK   82 (114)
T ss_pred             EEEEECCC------ChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHc-C-CCCCCEEEEEECCEEEE
Confidence            44466665      99999998877543     2 5688999998864    44555 5 7788987  56887764

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PLN02817 glutathione dehydrogenase (ascorbate)

Probab=93.94  E-value=0.15  Score=45.31  Aligned_cols=62  Identities=23%  Similarity=0.222  Sum_probs=47.0

Q ss_pred             CChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           85 TYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        85 tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      .||+|.+++-+|+.+|++|+.+.|+... .-+++.++.  ....+|.+..+|..|.....|.+..
T Consensus        72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iN--P~GkVPvL~~d~~~L~ES~aI~~YL  133 (265)
T PLN02817         72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKIS--PEGKVPVVKLDEKWVADSDVITQAL  133 (265)
T ss_pred             CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhC--CCCCCCEEEECCEEEecHHHHHHHH
Confidence            5999999999999999999987776532 234566665  3679999999998776666655443

>PLN02378 glutathione S-transferase DHAR1

Probab=93.38  E-value=0.22  Score=42.07  Aligned_cols=62  Identities=16%  Similarity=0.132  Sum_probs=45.8

Q ss_pred             CCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhH
Q 027825           84 RTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        84 ~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l  148 (218)
                      .+|++|.+|+-+|+.+|++|+.+.|+... ...++.+..  ...++|.+..+|..|.-...|.+.
T Consensus        18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~in--P~G~VPvL~~~~~~l~ES~aI~~Y   79 (213)
T PLN02378         18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDIS--PQGKVPVLKIDDKWVTDSDVIVGI   79 (213)
T ss_pred             CCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhC--CCCCCCEEEECCEEecCHHHHHHH
Confidence            36999999999999999999877776532 223566665  378999998888766555554443

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.24  E-value=0.074  Score=49.88  Aligned_cols=49  Identities=33%  Similarity=0.741  Sum_probs=40.6

Q ss_pred             CcCCCCCCCc------ceeeCCCCCCCceeeecC--C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGA------RFVPCFDCGGSCKVVLAN--G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~------rfv~C~~C~Gs~k~~~~~--~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|+.|.|.      .-..|+.|||+=.+....  +   ....|+.||=.|-+   +|+.|.
T Consensus       142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~  204 (371)
T COG0484         142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCK  204 (371)
T ss_pred             eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCC
Confidence            5689999988      778999999997765544  3   37899999999987   599995

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=93.19  E-value=0.67  Score=34.67  Aligned_cols=59  Identities=15%  Similarity=0.094  Sum_probs=39.0

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV  139 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~I  139 (218)
                      ||.|+++      +|+.|+.....|+..     .+.|-.+|++.+... .++.+.. + ...+|.+  |-+|+.+
T Consensus        19 vv~F~a~------wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~-~-V~~~Pt~~~~~~G~~v   84 (103)
T cd02985          19 VLEFALK------HSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRRE-K-IIEVPHFLFYKDGEKI   84 (103)
T ss_pred             EEEEECC------CCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHc-C-CCcCCEEEEEeCCeEE
Confidence            4445555      499999888777652     577888888766433 3454555 5 7788876  4477654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PRK10767 chaperone protein DnaJ; Provisional

Probab=93.04  E-value=0.1  Score=48.46  Aligned_cols=49  Identities=29%  Similarity=0.742  Sum_probs=36.9

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecCCc---eeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLANGD---KQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|..|+|+-.++...+.   ...|+.|+=.|.+   +|+.|.
T Consensus       142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  202 (371)
T PRK10767        142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCH  202 (371)
T ss_pred             cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCC
Confidence            557888888764      579999999776654432   5689999988865   788885

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=93.02  E-value=0.8  Score=39.90  Aligned_cols=34  Identities=9%  Similarity=0.190  Sum_probs=24.8

Q ss_pred             CCCCcEEEEEeecCCCCCCChHHHHHHHHHhhC---CCcEEEE
Q 027825           67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN---RVVTDER  106 (218)
Q Consensus        67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~---gV~~~er  106 (218)
                      .+...|++||-.      .||||++....|..+   +|.+..+
T Consensus       106 ~~k~~I~vFtDp------~CpyCkkl~~~l~~~~~~~v~v~~~  142 (232)
T PRK10877        106 QEKHVITVFTDI------TCGYCHKLHEQMKDYNALGITVRYL  142 (232)
T ss_pred             CCCEEEEEEECC------CChHHHHHHHHHHHHhcCCeEEEEE
Confidence            445567788777      799999998888774   4665544

>PRK14300 chaperone protein DnaJ; Provisional

Probab=92.95  E-value=0.1  Score=48.58  Aligned_cols=49  Identities=29%  Similarity=0.745  Sum_probs=38.0

Q ss_pred             CcCCCCCCCcc------eeeCCCCCCCceeeecCCc---eeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGAR------FVPCFDCGGSCKVVLANGD---KQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+      ...|+.|+|+-+++...+.   ...|+.|+-.|-+   +|+.|.
T Consensus       145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  205 (372)
T PRK14300        145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCH  205 (372)
T ss_pred             ccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCC
Confidence            45788888865      5789999999877654442   5689999999955   788885

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=92.88  E-value=0.39  Score=36.82  Aligned_cols=57  Identities=12%  Similarity=0.264  Sum_probs=34.5

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHh---------hCCCcEEEEECCCCHHH---------HHHHHHHhCCCcccccEE-
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFE---------VNRVVTDERDVSLHGQF---------LNELKDLLGGETVTVPRV-  132 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~---------~~gV~~~erDVs~d~~~---------r~eLk~~~~g~~~tvPqV-  132 (218)
                      +|.|+++      +|++|++....+.         ..++.+..+|++.+...         ..+|.... + ...+|.+ 
T Consensus        18 lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~-~-v~~~Pt~~   89 (125)
T cd02951          18 LLLFSQP------GCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY-R-VRFTPTVI   89 (125)
T ss_pred             EEEEeCC------CCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc-C-CccccEEE
Confidence            4555555      5999998775432         12455667777654211         24565666 5 7889996 


Q ss_pred             EECC
Q 027825          133 FIKG  136 (218)
Q Consensus       133 FI~G  136 (218)
                      |+++
T Consensus        90 ~~~~   93 (125)
T cd02951          90 FLDP   93 (125)
T ss_pred             EEcC
Confidence            5554

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=92.86  E-value=0.56  Score=36.79  Aligned_cols=64  Identities=19%  Similarity=0.249  Sum_probs=43.7

Q ss_pred             CCcEEEEEeecCCCCCCChHHHHHHHHHhhC-----C-CcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825           69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----R-VVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG  140 (218)
Q Consensus        69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----g-V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG  140 (218)
                      ...|+.|+.+|-    .||.|..+.-+|++.     + +.|-.+|++.++    +|.+.. + ..++|.+  |-+|+.++
T Consensus        28 ~~~v~~f~~~~~----~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f-~-V~sIPTli~fkdGk~v~   97 (111)
T cd02965          28 GDLVLLLAGDPV----RFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARF-G-VLRTPALLFFRDGRYVG   97 (111)
T ss_pred             CCEEEEecCCcc----cCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHc-C-CCcCCEEEEEECCEEEE
Confidence            344555666641    299999999877653     2 446688888775    555555 5 8888987  66998876


Q ss_pred             cc
Q 027825          141 GV  142 (218)
Q Consensus       141 G~  142 (218)
                      ..
T Consensus        98 ~~   99 (111)
T cd02965          98 VL   99 (111)
T ss_pred             EE
Confidence            54

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi

Probab=92.84  E-value=0.66  Score=33.15  Aligned_cols=60  Identities=13%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             CCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825           81 GVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE  150 (218)
Q Consensus        81 giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e  150 (218)
                      |+-...++|-++..+|+-.+++|+.+... +.       . . +....+|.|..+|+.|++++.+.+..+
T Consensus        11 g~ps~sp~clk~~~~Lr~~~~~~~v~~~~-n~-------~-~-sp~gkLP~l~~~~~~i~d~~~Ii~~L~   70 (73)
T cd03078          11 GLPSVDPECLAVLAYLKFAGAPLKVVPSN-NP-------W-R-SPTGKLPALLTSGTKISGPEKIIEYLR   70 (73)
T ss_pred             CCCcCCHHHHHHHHHHHcCCCCEEEEecC-CC-------C-C-CCCCccCEEEECCEEecChHHHHHHHH
Confidence            45556799999999999999999665333 21       1 1 225679999999999999998877643

Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=92.78  E-value=0.75  Score=33.18  Aligned_cols=56  Identities=20%  Similarity=0.309  Sum_probs=37.2

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhh------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEV------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV  139 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~I  139 (218)
                      ++.|+++      .|+.|+++...|++      ..+.+-.+|++...+    +.+.. + ...+|.+  |.+|+.+
T Consensus        18 ~v~f~~~------~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~-~-i~~~Pt~~~~~~g~~~   81 (97)
T cd02984          18 VLHFWAP------WAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKF-E-ITAVPTFVFFRNGTIV   81 (97)
T ss_pred             EEEEECC------CCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhc-C-CccccEEEEEECCEEE
Confidence            4556666      59999999887765      246677777765543    44445 5 7778966  5677643

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PF13901 DUF4206: Domain of unknown function (DUF4206)

Probab=92.55  E-value=0.068  Score=45.82  Aligned_cols=88  Identities=19%  Similarity=0.303  Sum_probs=62.9

Q ss_pred             cccEEEECCEEEecchhhHhHHHhCcHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCCCceeeec-CCceeccCCcC
Q 027825          128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLA-NGDKQRCGVCN  206 (218)
Q Consensus       128 tvPqVFI~G~~IGG~del~~l~e~G~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~-~~~~~rC~~Cn  206 (218)
                      ..|.-+++.-++-...++.++ .+|.|.+.|+.+-...-..-..|+-|-+.+| .|..|+.+.-+|-= .....+|+.|+
T Consensus       102 ~~~~hl~~~~~~YSl~DL~~v-~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~~~IfPF~~~~~~~C~~C~  179 (202)
T PF13901_consen  102 QPRDHLLEDPHLYSLADLVQV-KSGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSDDIIFPFQIDTTVRCPKCK  179 (202)
T ss_pred             cchhhhhhCCceEcHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCCCCCCCCCCCCeeeCCcCc
Confidence            456667888888888999887 5899999988765443223448999999998 89999998444322 23589999987


Q ss_pred             cCC------cccCCCCC
Q 027825          207 ENG------LVHCPACS  217 (218)
Q Consensus       207 enG------l~~C~~C~  217 (218)
                      --=      ...||.|.
T Consensus       180 ~v~H~~C~~~~~CpkC~  196 (202)
T PF13901_consen  180 SVFHKSCFRKKSCPKCA  196 (202)
T ss_pred             cccchhhcCCCCCCCcH
Confidence            421      15577773

>PRK10996 thioredoxin 2; Provisional

Probab=92.49  E-value=0.48  Score=37.70  Aligned_cols=56  Identities=14%  Similarity=0.246  Sum_probs=37.6

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECCEEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRYV  139 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G~~I  139 (218)
                      ++.|+++      +|+.|+.+...|...      ++.+-.+|++.+.++    .+.. + ...+|.++  -+|+.+
T Consensus        56 vv~F~a~------wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~-~-V~~~Ptlii~~~G~~v  119 (139)
T PRK10996         56 VIDFWAP------WCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAEREL----SARF-R-IRSIPTIMIFKNGQVV  119 (139)
T ss_pred             EEEEECC------CCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHH----HHhc-C-CCccCEEEEEECCEEE
Confidence            5556666      499999887666442      466777888877554    4444 4 77788774  477755

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=92.31  E-value=0.79  Score=33.73  Aligned_cols=54  Identities=11%  Similarity=0.124  Sum_probs=36.1

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECC
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV----N--RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKG  136 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~----~--gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G  136 (218)
                      -+|.|+++|      |+.|+.+...++.    +  .+.+-.+|.+.+.+    +.+.. + ...+|.+  |.+|
T Consensus        22 v~v~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~-~-i~~~Pt~~~~~~g   83 (104)
T cd03004          22 WLVDFYAPW------CGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQA-N-IRAYPTIRLYPGN   83 (104)
T ss_pred             EEEEEECCC------CHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHc-C-CCcccEEEEEcCC
Confidence            366677774      9999988766643    2  36678888887654    44444 5 7788887  4455

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=92.29  E-value=0.63  Score=39.60  Aligned_cols=61  Identities=18%  Similarity=0.248  Sum_probs=41.1

Q ss_pred             CCcEEEEEe---ecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE--CCEE
Q 027825           69 SDGVVIYTT---SLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRY  138 (218)
Q Consensus        69 ~~kVVlYtt---sl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI--~G~~  138 (218)
                      .-.|++|++   +|      |+.|+.+..+|+..     ++.+..+|++.+.  -.++.+.. + ...+|.+.+  +|+.
T Consensus        20 ~~~i~~f~~~~a~w------C~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~-~-V~~~Pt~~~f~~g~~   89 (215)
T TIGR02187        20 PVEIVVFTDNDKEG------CQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKY-G-VERVPTTIILEEGKD   89 (215)
T ss_pred             CeEEEEEcCCCCCC------CCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHc-C-CCccCEEEEEeCCee
Confidence            445889988   75      99999999888665     3455667776432  23455555 5 888898855  6544


Q ss_pred             E
Q 027825          139 V  139 (218)
Q Consensus       139 I  139 (218)
                      +
T Consensus        90 ~   90 (215)
T TIGR02187        90 G   90 (215)
T ss_pred             e
Confidence            4

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait

Probab=92.23  E-value=0.58  Score=34.03  Aligned_cols=54  Identities=11%  Similarity=0.193  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           87 EDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        87 ~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      +.|.++..+|+..|++|+.+++....        .. .....+|.|-+||+.|+....+..+.
T Consensus        18 ~~~~kv~~~L~elglpye~~~~~~~~--------~~-~P~GkVP~L~~dg~vI~eS~aIl~yL   71 (74)
T cd03079          18 ASCLAVQTFLKMCNLPFNVRCRANAE--------FM-SPSGKVPFIRVGNQIVSEFGPIVQFV   71 (74)
T ss_pred             CCHHHHHHHHHHcCCCcEEEecCCcc--------cc-CCCCcccEEEECCEEEeCHHHHHHHH
Confidence            58999999999999999988754311        11 22457999999999999888876553

Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=91.87  E-value=1.1  Score=37.36  Aligned_cols=36  Identities=17%  Similarity=0.318  Sum_probs=26.2

Q ss_pred             CCCCcEEEEEeecCCCCCCChHHHHHHHHHh--hCCCcEEEEEC
Q 027825           67 GGSDGVVIYTTSLRGVRRTYEDCNRVRSTFE--VNRVVTDERDV  108 (218)
Q Consensus        67 ~~~~kVVlYttsl~giR~tc~~C~~vr~iL~--~~gV~~~erDV  108 (218)
                      .+...|++|+-.      .||+|+++...|.  ..+|.+..+-+
T Consensus        76 ~~~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~v~v~~~~~  113 (197)
T cd03020          76 NGKRVVYVFTDP------DCPYCRKLEKELKPNADGVTVRIFPV  113 (197)
T ss_pred             CCCEEEEEEECC------CCccHHHHHHHHhhccCceEEEEEEc
Confidence            345567777776      6999999999887  45666666554

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=91.83  E-value=0.7  Score=32.57  Aligned_cols=53  Identities=19%  Similarity=0.315  Sum_probs=34.6

Q ss_pred             CcEEEEEeecCCCCCCChHHHHHHHHHhh----C----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEV----N----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI  134 (218)
Q Consensus        70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~----~----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI  134 (218)
                      .-+++|+++      +|+.|..+...|+.    .    ++.+..+|.+.+.    ++.+.. + ...+|.+++
T Consensus        17 ~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~-~-i~~~Pt~~~   77 (101)
T cd02961          17 DVLVEFYAP------WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEY-G-VRGYPTIKL   77 (101)
T ss_pred             cEEEEEECC------CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhC-C-CCCCCEEEE
Confidence            346666666      59999998876644    3    3556667766543    344445 5 788998843

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=91.70  E-value=0.15  Score=47.08  Aligned_cols=49  Identities=27%  Similarity=0.639  Sum_probs=31.1

Q ss_pred             CcCCCCCCCcceeeCCCCCCCceeee----------------c------------CCceeccCCcCcCCcccCCCCC
Q 027825          169 RQACEGCGGARFVPCFDCGGSCKVVL----------------A------------NGDKQRCGVCNENGLVHCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rfv~C~~C~Gs~k~~~----------------~------------~~~~~rC~~CnenGl~~C~~C~  217 (218)
                      ...|.+|-|.+-+.|+.||||---+.                .            ..+.++|+.|.--|++.|..|.
T Consensus       187 v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~  263 (406)
T KOG2813|consen  187 VTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCS  263 (406)
T ss_pred             hhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccccccc
Confidence            44688888888888888887752110                0            1136667777777777777764

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=91.62  E-value=0.7  Score=34.48  Aligned_cols=55  Identities=16%  Similarity=0.178  Sum_probs=37.9

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC------------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECC
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN------------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKG  136 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~------------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G  136 (218)
                      -+|.|+++|      |+.|++....++..            .+.|-.+|.+.+.    ++.+.. + ..++|.++  -+|
T Consensus        21 vlv~F~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~----~l~~~~-~-v~~~Ptl~~~~~g   88 (108)
T cd02996          21 VLVNFYADW------CRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES----DIADRY-R-INKYPTLKLFRNG   88 (108)
T ss_pred             EEEEEECCC------CHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH----HHHHhC-C-CCcCCEEEEEeCC
Confidence            356677775      99999998777421            3667788887764    345555 5 88899884  455


Q ss_pred             E
Q 027825          137 R  137 (218)
Q Consensus       137 ~  137 (218)
                      +
T Consensus        89 ~   89 (108)
T cd02996          89 M   89 (108)
T ss_pred             c
Confidence            4

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=91.50  E-value=0.79  Score=33.14  Aligned_cols=56  Identities=18%  Similarity=0.261  Sum_probs=37.2

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECCEEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRYV  139 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G~~I  139 (218)
                      ++.|+++      .|+.|+.+...|...      .+.+-.+|++.+.+    |.+.. + ...+|.++  -+|+.+
T Consensus        16 lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~-~-i~~~Pt~~~~~~g~~~   79 (96)
T cd02956          16 VVDFWAP------RSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQF-G-VQALPTVYLFAAGQPV   79 (96)
T ss_pred             EEEEECC------CChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHc-C-CCCCCEEEEEeCCEEe
Confidence            4555566      499999997777542      35567788877654    44445 5 77899885  466544

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=91.47  E-value=0.22  Score=46.63  Aligned_cols=49  Identities=33%  Similarity=0.762  Sum_probs=35.3

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecCCc---eeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLANGD---KQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|+.|+|+-.++...+.   ...|+.|+=.|-+   +|+.|.
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  218 (391)
T PRK14284        158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCR  218 (391)
T ss_pred             eccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCC
Confidence            557888877664      569999999766543332   5789999888854   588884

>PLN02395 glutathione S-transferase

Probab=91.35  E-value=0.63  Score=38.70  Aligned_cols=70  Identities=14%  Similarity=0.070  Sum_probs=50.5

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCC--HHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHH
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d--~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~  149 (218)
                      +.||...       ...+.+++-+|..+|++|+.+.|+..  .....++.+..  ....+|.+..+|..|-....|.+..
T Consensus         3 ~~ly~~~-------~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~n--P~g~vP~L~~~~~~l~ES~aI~~YL   73 (215)
T PLN02395          3 LKVYGPA-------FASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQ--PFGVVPVIVDGDYKIFESRAIMRYY   73 (215)
T ss_pred             EEEEcCC-------cCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhC--CCCCCCEEEECCEEEEcHHHHHHHH
Confidence            6788744       34579999999999999998887642  12235677765  3789999998887777666665544


Q ss_pred             H
Q 027825          150 E  150 (218)
Q Consensus       150 e  150 (218)
                      +
T Consensus        74 ~   74 (215)
T PLN02395         74 A   74 (215)
T ss_pred             H
Confidence            3

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=91.27  E-value=0.85  Score=33.36  Aligned_cols=52  Identities=12%  Similarity=0.251  Sum_probs=36.7

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC-------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN-------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI  134 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~-------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI  134 (218)
                      -+|.|+++|      |+.|+.+...|+..       +|.+-.+|++.+..    +.... + ..++|.+++
T Consensus        19 ~lv~f~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~-~-i~~~Pt~~~   77 (101)
T cd02994          19 WMIEFYAPW------CPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRF-F-VTALPTIYH   77 (101)
T ss_pred             EEEEEECCC------CHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHc-C-CcccCEEEE
Confidence            577777885      99999888776432       46678888877654    33344 4 778888864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PRK14285 chaperone protein DnaJ; Provisional

Probab=91.27  E-value=0.24  Score=46.01  Aligned_cols=49  Identities=33%  Similarity=0.744  Sum_probs=35.9

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecCC---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLANG---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|..|+|+-.++...+   ....|+.|+=.|-+   +|+.|.
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  206 (365)
T PRK14285        146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCK  206 (365)
T ss_pred             cccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCC
Confidence            457888888763      57999999977655333   25689999888854   688885

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=91.07  E-value=0.48  Score=34.12  Aligned_cols=53  Identities=17%  Similarity=0.318  Sum_probs=35.3

Q ss_pred             CcEEEEEeecCCCCCCChHHHHHHHHHhhC--------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN--------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI  134 (218)
Q Consensus        70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~--------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI  134 (218)
                      --|++|+++|      |+.|+.....|+..        ++.+..+|...+..    +.+.. + ...+|.+|+
T Consensus        15 ~~~i~f~~~~------C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~-~-i~~~P~~~~   75 (102)
T TIGR01126        15 DVLVEFYAPW------CGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD----LASRF-G-VSGFPTIKF   75 (102)
T ss_pred             cEEEEEECCC------CHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH----HHHhC-C-CCcCCEEEE
Confidence            3477778884      99999866555331        26677778776644    44445 5 788998843

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional

Probab=90.98  E-value=0.88  Score=38.12  Aligned_cols=54  Identities=15%  Similarity=0.181  Sum_probs=41.1

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH--HHHHHHHHHhCCCcccccEEEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFI  134 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~--~~r~eLk~~~~g~~~tvPqVFI  134 (218)
                      +.||...       .+.+.+|+-+|+.+||+|+.++|+...  ....+++++.  ....+|.+..
T Consensus         2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iN--P~gkVP~L~~   57 (215)
T PRK13972          2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRIS--PNNKIPAIVD   57 (215)
T ss_pred             eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhC--cCCCCCEEEe
Confidence            4678765       478999999999999999988876532  2345677765  3779999987

>PRK10357 putative glutathione S-transferase; Provisional

Probab=90.77  E-value=0.53  Score=38.84  Aligned_cols=64  Identities=8%  Similarity=-0.053  Sum_probs=45.1

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE-CCEEEecchhh
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI-KGRYVGGVDEL  145 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~del  145 (218)
                      .||++.      .++++.+|+-+|+.+||+|+.++++.... ..++.+..  ....+|.+.. +|..+-....|
T Consensus         2 ~Ly~~~------~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~n--P~g~vP~L~~~~g~~l~eS~aI   66 (202)
T PRK10357          2 KLIGSY------TSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYN--PLGKVPALVTEEGECWFDSPII   66 (202)
T ss_pred             eeecCC------CCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcC--CccCCCeEEeCCCCeeecHHHH
Confidence            577777      58999999999999999999988865321 13444544  3788999985 56544444333

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=90.75  E-value=0.94  Score=33.28  Aligned_cols=55  Identities=15%  Similarity=0.180  Sum_probs=36.5

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGR  137 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~  137 (218)
                      -+|.|+++|      |+.|+.+...++..      .+.+-.+|++.+..    +.+.. + ...+|.+  |-+|+
T Consensus        21 ~~v~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~-~-v~~~Pt~~~~~~g~   83 (101)
T cd03003          21 WFVNFYSPR------CSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQ-G-VNSYPSLYVFPSGM   83 (101)
T ss_pred             EEEEEECCC------ChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHc-C-CCccCEEEEEcCCC
Confidence            356667774      99999988776443      25577888877654    33344 4 7788988  44564

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=90.70  E-value=1.5  Score=34.67  Aligned_cols=62  Identities=10%  Similarity=0.071  Sum_probs=44.6

Q ss_pred             CCCcEEEEEeecCCCCCCCh--HHH----------HHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--E
Q 027825           68 GSDGVVIYTTSLRGVRRTYE--DCN----------RVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--F  133 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~--~C~----------~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--F  133 (218)
                      .+..||+|+..|     .|.  .|+          .+.++|+..+|.+-.+|++.+.+    |.+.. | ..++|.+  |
T Consensus        26 ~~~~vvv~f~a~-----wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~----La~~~-~-I~~iPTl~lf   94 (120)
T cd03065          26 YDVLCLLYHEPV-----ESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK----VAKKL-G-LDEEDSIYVF   94 (120)
T ss_pred             CCceEEEEECCC-----cCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH----HHHHc-C-CccccEEEEE
Confidence            455788999987     353  486          34456667789999999998855    44455 5 7788887  7


Q ss_pred             ECCEEEe
Q 027825          134 IKGRYVG  140 (218)
Q Consensus       134 I~G~~IG  140 (218)
                      .+|+.+.
T Consensus        95 k~G~~v~  101 (120)
T cd03065          95 KDDEVIE  101 (120)
T ss_pred             ECCEEEE
Confidence            8998654

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.66  E-value=0.26  Score=40.75  Aligned_cols=70  Identities=20%  Similarity=0.272  Sum_probs=47.0

Q ss_pred             ccCCCCCCCCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccE
Q 027825           58 SDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPR  131 (218)
Q Consensus        58 ~~~~~~~pp~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPq  131 (218)
                      ++|+.+..-....=||-|+..|      |.-|+.+.-+|+++      .+.+-.+|++.+.++    .... + ...+|.
T Consensus        51 ~~~~~~Vi~S~~PVlVdF~A~W------CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~el----a~~Y-~-I~avPt  118 (150)
T KOG0910|consen   51 SEFDDKVINSDVPVLVDFHAEW------CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPEL----AEDY-E-ISAVPT  118 (150)
T ss_pred             HHHHHHHHccCCCEEEEEecCc------CccHhHhhHHHHHHHHhhcCeEEEEEEccccccch----Hhhc-c-eeeeeE
Confidence            3444444333334477899997      99999999888765      355777888877654    3444 4 778888


Q ss_pred             E--EECCEEE
Q 027825          132 V--FIKGRYV  139 (218)
Q Consensus       132 V--FI~G~~I  139 (218)
                      |  |.||+-+
T Consensus       119 vlvfknGe~~  128 (150)
T KOG0910|consen  119 VLVFKNGEKV  128 (150)
T ss_pred             EEEEECCEEe
Confidence            7  6788654

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=90.62  E-value=1.1  Score=37.45  Aligned_cols=60  Identities=18%  Similarity=0.221  Sum_probs=39.8

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEecc
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGGV  142 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IGG~  142 (218)
                      .|||++..-     +|+.|+.+...|+..     .+.|..+|++..     ++.+.. + ...+|.+  |.+|+.++..
T Consensus        85 ~VVV~Fya~-----wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f-~-v~~vPTlllyk~G~~v~~~  151 (175)
T cd02987          85 TVVVHIYEP-----GIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEF-D-TDALPALLVYKGGELIGNF  151 (175)
T ss_pred             EEEEEEECC-----CCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhC-C-CCCCCEEEEEECCEEEEEE
Confidence            566544432     599999887766443     466778887643     555666 5 7889976  6699876533

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PRK14288 chaperone protein DnaJ; Provisional

Probab=90.51  E-value=0.29  Score=45.56  Aligned_cols=49  Identities=35%  Similarity=0.870  Sum_probs=32.8

Q ss_pred             CcCCCCCCCcce-----eeCCCCCCCceeeecCCc---eeccCCcCcCCc---ccCCCCC
Q 027825          169 RQACEGCGGARF-----VPCFDCGGSCKVVLANGD---KQRCGVCNENGL---VHCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf-----v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl---~~C~~C~  217 (218)
                      ...|+.|.|.+.     ..|..|+|+-.+....+.   ...|+.|+-.|.   .+|+.|.
T Consensus       140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  199 (369)
T PRK14288        140 QSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACK  199 (369)
T ss_pred             eccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCC
Confidence            346888877663     468888888766544432   457888887774   4577774

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=90.19  E-value=1.7  Score=32.31  Aligned_cols=54  Identities=15%  Similarity=0.118  Sum_probs=34.1

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhh----CC---CcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEV----NR---VVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRY  138 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~----~g---V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~  138 (218)
                      |+.|+++|      |+.|+.+...|+.    ++   +.|..+|++ +.    ++.+.. + ...+|.+  |-+|+.
T Consensus        21 vv~F~a~w------C~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~-~-v~~~Pt~~~~~~g~~   83 (102)
T cd02948          21 VVDVYQEW------CGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRY-R-GKCEPTFLFYKNGEL   83 (102)
T ss_pred             EEEEECCc------CHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHc-C-CCcCcEEEEEECCEE
Confidence            55666664      9999988776654    32   456777777 33    233444 4 7778865  557764

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PRK14286 chaperone protein DnaJ; Provisional

Probab=90.17  E-value=0.28  Score=45.67  Aligned_cols=49  Identities=31%  Similarity=0.777  Sum_probs=34.1

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecCCc---eeccCCcCcCCc---ccCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLANGD---KQRCGVCNENGL---VHCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl---~~C~~C~  217 (218)
                      ...|..|.|.+.      ..|..|+|+-.++...+.   ...|+.|+--|.   .+|+.|.
T Consensus       150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  210 (372)
T PRK14286        150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCG  210 (372)
T ss_pred             cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCC
Confidence            457888888764      678888888766544332   567888887774   3677774

>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=90.12  E-value=1.6  Score=31.46  Aligned_cols=60  Identities=17%  Similarity=0.099  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHhhCCCcEEEEECCCCH-------HHHHHHHHHhCCCcccccEEEECCEEEecchhhHh
Q 027825           87 EDCNRVRSTFEVNRVVTDERDVSLHG-------QFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        87 ~~C~~vr~iL~~~gV~~~erDVs~d~-------~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~  147 (218)
                      ..|.+++-+|...||+|+.+.|+...       ++.....+.. -...++|.+..||..+.-...|..
T Consensus        10 ~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~-~P~g~vP~L~~~g~~l~ES~AIl~   76 (82)
T cd03075          10 GLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLG-LDFPNLPYYIDGDVKLTQSNAILR   76 (82)
T ss_pred             cccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcC-CcCCCCCEEEECCEEEeehHHHHH
Confidence            57889999999999999988886532       2221111111 135689999988876655555443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc

>PRK14298 chaperone protein DnaJ; Provisional

Probab=90.07  E-value=0.32  Score=45.44  Aligned_cols=49  Identities=35%  Similarity=0.894  Sum_probs=35.9

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|+.|+|+-.++...    +   ....|+.|+=.|-+   +|+.|.
T Consensus       141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  205 (377)
T PRK14298        141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCS  205 (377)
T ss_pred             eccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCC
Confidence            457999988775      6799999997665432    1   25789999988844   688884

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=90.04  E-value=1.5  Score=31.83  Aligned_cols=50  Identities=16%  Similarity=0.290  Sum_probs=33.6

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhh------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEV------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF  133 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF  133 (218)
                      +++|+++      +|+.|+.....|..      ..+.+-.+|++.+.+    +.+.. + ...+|.++
T Consensus        22 lv~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~-~-i~~~P~~~   77 (103)
T cd03001          22 LVEFYAP------WCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQY-G-VRGFPTIK   77 (103)
T ss_pred             EEEEECC------CCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHC-C-CCccCEEE
Confidence            5555666      59999998776644      246677888876654    34444 5 77899874

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=89.96  E-value=1.7  Score=35.62  Aligned_cols=63  Identities=16%  Similarity=0.274  Sum_probs=39.3

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhh-------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEe
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEV-------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG  140 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~-------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IG  140 (218)
                      ||.|+++|      |+.|+.+...|++       .++.+-.+|++.+++..+.+.=...-+..++|.+  |.+|+.++
T Consensus        51 vV~Fya~w------C~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~  122 (152)
T cd02962          51 LVEFFTTW------SPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA  122 (152)
T ss_pred             EEEEECCC------CHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence            66677775      9999988866633       2477889999888755443321000001237876  67887664

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=89.95  E-value=2.2  Score=32.30  Aligned_cols=57  Identities=18%  Similarity=0.275  Sum_probs=37.5

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHH----hh---CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECCEEE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTF----EV---NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRYV  139 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL----~~---~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G~~I  139 (218)
                      -+|.|+++|      |+.|+....+|    +.   .++.+-.+|++.+..    +.... + ..++|.++  .+|+.+
T Consensus        27 vlV~F~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~-~-V~~~Pt~~i~~~g~~~   92 (111)
T cd02963          27 YLIKITSDW------CFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKL-G-AHSVPAIVGIINGQVT   92 (111)
T ss_pred             EEEEEECCc------cHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHc-C-CccCCEEEEEECCEEE
Confidence            355666674      99998776544    22   357788888876654    33444 5 78889774  677654

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]

Probab=89.92  E-value=0.21  Score=45.13  Aligned_cols=86  Identities=16%  Similarity=0.148  Sum_probs=61.6

Q ss_pred             CccccCCCCCCCCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCC--CHHHHHHHHHHhCCCcccccEE
Q 027825           55 DLLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL--HGQFLNELKDLLGGETVTVPRV  132 (218)
Q Consensus        55 ~~~~~~~~~~pp~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~--d~~~r~eLk~~~~g~~~tvPqV  132 (218)
                      .+..++.+..||..   .|||.-+.      --..++||-.+.++||.|+++||+.  .+..-..+..+.  ....||++
T Consensus        13 ~~~~~~ka~~~~e~---~vLyhhpy------sf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlN--p~gevPVl   81 (325)
T KOG4420|consen   13 APEAASKAHWPRES---LVLYHHPY------SFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLN--PGGEVPVL   81 (325)
T ss_pred             CchhhcCCCCchhc---ceeeecCc------ccccceeeeehhhcccccceeeccCccccccCchheecC--CCCCCceE
Confidence            33455666665543   89999984      4578999999999999999999974  222233344443  36778987


Q ss_pred             EECCEEEecchhhHhHHHh
Q 027825          133 FIKGRYVGGVDELTELNES  151 (218)
Q Consensus       133 FI~G~~IGG~del~~l~e~  151 (218)
                      .-+...|-.+.+|.+..|.
T Consensus        82 ~~g~~II~d~tqIIdYvEr  100 (325)
T KOG4420|consen   82 IHGDNIISDYTQIIDYVER  100 (325)
T ss_pred             ecCCeecccHHHHHHHHHH
Confidence            6666778888888877766

>PRK14295 chaperone protein DnaJ; Provisional

Probab=89.91  E-value=0.29  Score=45.93  Aligned_cols=49  Identities=29%  Similarity=0.769  Sum_probs=34.3

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecCCc---eeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLANGD---KQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|..|+|+-.++...+.   ..+|+.|+=.|.+   +|+.|.
T Consensus       166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  226 (389)
T PRK14295        166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCK  226 (389)
T ss_pred             cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCC
Confidence            456888877664      578888888766544332   5688888888865   577774

>PRK14287 chaperone protein DnaJ; Provisional

Probab=89.89  E-value=0.32  Score=45.33  Aligned_cols=49  Identities=29%  Similarity=0.849  Sum_probs=36.7

Q ss_pred             CcCCCCCCCcc------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGAR------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+      ...|..|+|+-.++...    +   ....|+.|+-.|.+   +|+.|.
T Consensus       138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  202 (371)
T PRK14287        138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCG  202 (371)
T ss_pred             eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCC
Confidence            45799998776      46799999997665432    1   15789999999965   688885

>PRK14301 chaperone protein DnaJ; Provisional

Probab=89.87  E-value=0.3  Score=45.50  Aligned_cols=49  Identities=39%  Similarity=0.902  Sum_probs=33.7

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecCCc---eeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLANGD---KQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|..|+|+-.+....+.   ...|+.|+=.|-+   +|+.|.
T Consensus       144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  204 (373)
T PRK14301        144 NVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCK  204 (373)
T ss_pred             cccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCC
Confidence            456888877664      568888888766544332   5778888877743   677774

>PRK14294 chaperone protein DnaJ; Provisional

Probab=89.79  E-value=0.35  Score=44.86  Aligned_cols=49  Identities=35%  Similarity=0.821  Sum_probs=34.8

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecCC---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLANG---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|..|+|+-.++...+   ....|+.|+=.|-+   +|+.|.
T Consensus       144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  204 (366)
T PRK14294        144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCH  204 (366)
T ss_pred             cccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCC
Confidence            457888888764      57899998876654333   25688888888855   677774

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=89.57  E-value=1.1  Score=32.28  Aligned_cols=52  Identities=15%  Similarity=0.238  Sum_probs=33.9

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhh----C----CCcEEEEECCC-CHHHHHHHHHHhCCCcccccEEEE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV----N----RVVTDERDVSL-HGQFLNELKDLLGGETVTVPRVFI  134 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~----~----gV~~~erDVs~-d~~~r~eLk~~~~g~~~tvPqVFI  134 (218)
                      -++.|+++      +|+.|+....++..    +    .+.+-.+|.+. +.++    .... + ...+|.+++
T Consensus        21 ~~v~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~-~-i~~~P~~~~   81 (105)
T cd02998          21 VLVEFYAP------WCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDL----AKKY-G-VSGFPTLKF   81 (105)
T ss_pred             EEEEEECC------CCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhh----HHhC-C-CCCcCEEEE
Confidence            35666666      59999987766643    2    35677788777 5443    3334 4 778998854

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PRK14291 chaperone protein DnaJ; Provisional

Probab=89.52  E-value=0.37  Score=45.02  Aligned_cols=49  Identities=35%  Similarity=0.837  Sum_probs=36.8

Q ss_pred             CcCCCCCCCcc------eeeCCCCCCCceeeecCCc---eeccCCcCcCCcc--cCCCCC
Q 027825          169 RQACEGCGGAR------FVPCFDCGGSCKVVLANGD---KQRCGVCNENGLV--HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~--~C~~C~  217 (218)
                      ...|..|.|.+      ...|+.|+|+-.++...+.   ...|+.|+--|.+  +|+.|.
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~  215 (382)
T PRK14291        156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCN  215 (382)
T ss_pred             eccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCC
Confidence            56799998876      5679999999777655432   5789999988854  588774

>PRK11752 putative S-transferase; Provisional

Probab=89.50  E-value=1.8  Score=38.11  Aligned_cols=73  Identities=14%  Similarity=0.169  Sum_probs=50.6

Q ss_pred             CCCCCcEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCC--CHHHHHHHHHHhCCCcccccEEEECC-
Q 027825           66 PGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSL--HGQFLNELKDLLGGETVTVPRVFIKG-  136 (218)
Q Consensus        66 p~~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~--d~~~r~eLk~~~~g~~~tvPqVFI~G-  136 (218)
                      |-+.+.+.||+..       .++|.+|+-+|+..      |++|+.+.|..  ......++.++.  ...++|.+..++ 
T Consensus        39 ~~~~~~~~Ly~~~-------s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iN--P~GkVP~Lv~~dg  109 (264)
T PRK11752         39 PVGKHPLQLYSLG-------TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEIN--PNSKIPALLDRSG  109 (264)
T ss_pred             CCCCCCeEEecCC-------CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhC--CCCCCCEEEeCCC
Confidence            4456689999854       78999999999986      88888776643  223345677765  377899998753 


Q ss_pred             ---EEEecchhhHh
Q 027825          137 ---RYVGGVDELTE  147 (218)
Q Consensus       137 ---~~IGG~del~~  147 (218)
                         ..|-....|.+
T Consensus       110 ~~~~~L~ES~AIl~  123 (264)
T PRK11752        110 NPPIRVFESGAILL  123 (264)
T ss_pred             CCCeEEEcHHHHHH
Confidence               34555544444

>PRK14282 chaperone protein DnaJ; Provisional

Probab=89.47  E-value=0.36  Score=44.84  Aligned_cols=49  Identities=29%  Similarity=0.859  Sum_probs=35.2

Q ss_pred             CcCCCCCCCcc------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGAR------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+      ...|+.|+|+-.++...    +   ....|+.|+-.|.+   +|+.|.
T Consensus       152 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  216 (369)
T PRK14282        152 YETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECG  216 (369)
T ss_pred             cccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCC
Confidence            45788888866      46799999997665432    1   25689999988865   587774

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=89.40  E-value=2.7  Score=33.59  Aligned_cols=53  Identities=15%  Similarity=0.174  Sum_probs=33.7

Q ss_pred             HHHHHHhhCCCcEEEEECCCCHH-------HHHHHHHHhCCCcccccEEEECCEEE--ecchhhH
Q 027825           91 RVRSTFEVNRVVTDERDVSLHGQ-------FLNELKDLLGGETVTVPRVFIKGRYV--GGVDELT  146 (218)
Q Consensus        91 ~vr~iL~~~gV~~~erDVs~d~~-------~r~eLk~~~~g~~~tvPqVFI~G~~I--GG~del~  146 (218)
                      .+.+.|++.||.+..+++++++.       ..+.|+..  | ...+|.++|||+.+  |.|=...
T Consensus        31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~--G-~e~LPitlVdGeiv~~G~YPt~e   92 (123)
T PF06953_consen   31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE--G-AEALPITLVDGEIVKTGRYPTNE   92 (123)
T ss_dssp             HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH----GGG-SEEEETTEEEEESS---HH
T ss_pred             HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc--C-cccCCEEEECCEEEEecCCCCHH
Confidence            44567789999999999988653       33334332  5 88999999999875  7775543

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=89.11  E-value=0.76  Score=35.66  Aligned_cols=60  Identities=10%  Similarity=0.195  Sum_probs=34.9

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhh------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE-EE--CCEEEe
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEV------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV-FI--KGRYVG  140 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV-FI--~G~~IG  140 (218)
                      +|.|+++|      |+.|+.+...+.+      ....|..+|++.+.+...   +..+-....+|.+ |+  +|+.++
T Consensus        23 lV~F~a~W------C~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~---~~~~~~g~~vPt~~f~~~~Gk~~~   91 (117)
T cd02959          23 MLLIHKTW------CGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD---EEFSPDGGYIPRILFLDPSGDVHP   91 (117)
T ss_pred             EEEEeCCc------CHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh---hhcccCCCccceEEEECCCCCCch
Confidence            44466664      9999999877766      334688888876643221   1220102248887 45  454433

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.05  E-value=0.84  Score=38.04  Aligned_cols=65  Identities=15%  Similarity=0.108  Sum_probs=48.6

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH-HHHHHHHHHhCCCcccccEEEECCE-EEecchhh
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG-QFLNELKDLLGGETVTVPRVFIKGR-YVGGVDEL  145 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~-~~r~eLk~~~~g~~~tvPqVFI~G~-~IGG~del  145 (218)
                      .||.+..      .++|.+|+-+|..+|+.|+.+.|+... ....++.++.  ....+|.+..++- .|-....|
T Consensus         2 ~L~~~~~------sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~n--P~gkVPvL~~~~~~~l~ES~AI   68 (211)
T COG0625           2 KLYGSPT------SPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALN--PLGKVPALVDDDGEVLTESGAI   68 (211)
T ss_pred             eeecCCC------CcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcC--CCCCCCEEeeCCCCeeecHHHH
Confidence            4666663      599999999999999999999987764 4456677775  3789999988874 34444433

>PRK14290 chaperone protein DnaJ; Provisional

Probab=88.98  E-value=0.43  Score=44.26  Aligned_cols=49  Identities=27%  Similarity=0.749  Sum_probs=35.1

Q ss_pred             CcCCCCCCCcce-----eeCCCCCCCceeeecC--Cc-----eeccCCcCcCC---cccCCCCC
Q 027825          169 RQACEGCGGARF-----VPCFDCGGSCKVVLAN--GD-----KQRCGVCNENG---LVHCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf-----v~C~~C~Gs~k~~~~~--~~-----~~rC~~CnenG---l~~C~~C~  217 (218)
                      ...|..|.|.+.     ..|+.|+|+-.+...-  +.     ..+|+.|+-.|   ..+|+.|.
T Consensus       149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~  212 (365)
T PRK14290        149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCN  212 (365)
T ss_pred             cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCC
Confidence            457888888775     5799999997654432  21     36899999888   44788884

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=88.97  E-value=1.7  Score=32.43  Aligned_cols=51  Identities=18%  Similarity=0.244  Sum_probs=34.6

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC-----CCcEEEEECC-CCHHHHHHHHHHhCCCcccccEEE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVS-LHGQFLNELKDLLGGETVTVPRVF  133 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~-----gV~~~erDVs-~d~~~r~eLk~~~~g~~~tvPqVF  133 (218)
                      -+|.|+++|      |+.|+.....|+..     ++.+-.+|.+ .+.    ++.+.. + ...+|.++
T Consensus        21 vlV~F~a~W------C~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~-~-V~~~PT~~   77 (100)
T cd02999          21 TAVLFYASW------CPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRY-G-VVGFPTIL   77 (100)
T ss_pred             EEEEEECCC------CHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhc-C-CeecCEEE
Confidence            466777775      99999988777543     4666677776 443    344555 5 78899774

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PRK14289 chaperone protein DnaJ; Provisional

Probab=88.80  E-value=0.41  Score=44.70  Aligned_cols=49  Identities=31%  Similarity=0.752  Sum_probs=36.6

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|..|+|+-.++..-    +   ....|+.|+=.|-+   +|+.|.
T Consensus       154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  218 (386)
T PRK14289        154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCG  218 (386)
T ss_pred             ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCC
Confidence            467999977664      6799999997765432    1   25789999998865   788885

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=88.66  E-value=0.42  Score=43.99  Aligned_cols=49  Identities=33%  Similarity=0.867  Sum_probs=35.1

Q ss_pred             CcCCCCCCCcc------eeeCCCCCCCceeeecCC-------ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGAR------FVPCFDCGGSCKVVLANG-------DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~~-------~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+      ...|..|+|+-.++....       ....|+.|+=.|-+   +|+.|.
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  207 (354)
T TIGR02349       143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCK  207 (354)
T ss_pred             CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCC
Confidence            55788888877      567999999876654322       14688888888864   588884

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=88.65  E-value=0.61  Score=32.81  Aligned_cols=38  Identities=34%  Similarity=0.935  Sum_probs=26.1

Q ss_pred             CCcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCC
Q 027825          168 GRQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENG  209 (218)
Q Consensus       168 ~~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenG  209 (218)
                      ....|..|.|.+++               +|+.|+|+-+++    ...+|+.|+=+|
T Consensus        14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i----~~~~C~~C~G~g   66 (66)
T PF00684_consen   14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII----EKDPCKTCKGSG   66 (66)
T ss_dssp             T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-----TSSB-SSSTTSS
T ss_pred             CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE----CCCCCCCCCCcC
Confidence            45689999998876               799999998885    256899997654

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function

Probab=88.48  E-value=5.5  Score=31.73  Aligned_cols=81  Identities=25%  Similarity=0.550  Sum_probs=48.9

Q ss_pred             CCCChHHH-----------HHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHHh
Q 027825           83 RRTYEDCN-----------RVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNES  151 (218)
Q Consensus        83 R~tc~~C~-----------~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e~  151 (218)
                      .+||+-|.           .++..|...||.+...-+.++.+   ++..    ...+-|.|.|+|+.             
T Consensus        12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~---~~~~----~~~~S~~I~inG~p-------------   71 (120)
T PF10865_consen   12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE---EFAR----QPLESPTIRINGRP-------------   71 (120)
T ss_pred             CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH---HHhh----cccCCCeeeECCEe-------------
Confidence            55788776           45566788888754444444332   1211    14567999999984             


Q ss_pred             CcHHHHHhhhhhhcccCCcCCCCCCCcceeeCCCCCC-CceeeecC
Q 027825          152 GKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGG-SCKVVLAN  196 (218)
Q Consensus       152 G~L~~lL~~~~~~~~~~~~~C~~Cgg~rfv~C~~C~G-s~k~~~~~  196 (218)
                        |+++| ++..    ....|..|+      |..|.+ .|+++.-+
T Consensus        72 --iE~~l-~~~v----~~s~C~~c~------~~~g~~~~CRt~~~~  104 (120)
T PF10865_consen   72 --IEDLL-GAEV----GESPCESCG------CSCGGDVDCRTLEYE  104 (120)
T ss_pred             --hhHhh-CCcc----ccCcccccc------cccCCCccceeEEEC
Confidence              67777 4433    356787776      445544 47776433

>PTZ00057 glutathione s-transferase; Provisional

Probab=88.39  E-value=3.9  Score=34.10  Aligned_cols=70  Identities=13%  Similarity=0.193  Sum_probs=48.1

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCH-HHH--HHHHH-HhCCCcccccEEEECCEEEecchhhH
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG-QFL--NELKD-LLGGETVTVPRVFIKGRYVGGVDELT  146 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~-~~r--~eLk~-~~~g~~~tvPqVFI~G~~IGG~del~  146 (218)
                      +++||+...      -..+..++-+|+..||+|+.+.+.... ++.  ++++. .. .....+|.+.+||..|.-...+.
T Consensus         4 ~~~L~y~~~------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~-nP~g~vP~L~~~~~~l~eS~AI~   76 (205)
T PTZ00057          4 EIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKD-TPFEQVPILEMDNIIFAQSQAIV   76 (205)
T ss_pred             ceEEEecCC------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCC-CCCCCCCEEEECCEEEecHHHHH
Confidence            488998764      467889999999999999999885432 221  12221 12 23778999999997776555544


Q ss_pred             h
Q 027825          147 E  147 (218)
Q Consensus       147 ~  147 (218)
                      .
T Consensus        77 ~   77 (205)
T PTZ00057         77 R   77 (205)
T ss_pred             H
Confidence            3

>PRK14279 chaperone protein DnaJ; Provisional

Probab=88.26  E-value=0.45  Score=44.66  Aligned_cols=49  Identities=27%  Similarity=0.657  Sum_probs=32.6

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecCC---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLANG---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|+.|+|+-.++...+   ....|+.|+=.|.+   +|+.|.
T Consensus       173 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~  233 (392)
T PRK14279        173 PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECK  233 (392)
T ss_pred             cccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCC
Confidence            456888877764      56888888866654433   25678888777743   566663

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=88.20  E-value=1.5  Score=31.65  Aligned_cols=56  Identities=20%  Similarity=0.284  Sum_probs=35.5

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC---------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECCEE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN---------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRY  138 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~---------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G~~  138 (218)
                      -++.|+++|      |+.|+.....|+..         .+.+-.+|.+.+..    +.+.. + ...+|.++  -+|+.
T Consensus        19 ~lv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~-~-v~~~Pt~~~~~~g~~   85 (102)
T cd03005          19 HFVKFFAPW------CGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEF-Q-VRGYPTLLLFKDGEK   85 (102)
T ss_pred             EEEEEECCC------CHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhc-C-CCcCCEEEEEeCCCe
Confidence            466677774      99999876555332         35677778776653    33334 4 77899864  46643

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.92  E-value=1.1  Score=41.06  Aligned_cols=63  Identities=17%  Similarity=0.249  Sum_probs=45.7

Q ss_pred             CcEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEEec
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGG  141 (218)
Q Consensus        70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~IGG  141 (218)
                      .+|+||+.+-     .|+.|.+..-+|++.      ++.+-.+|++.++.+.    ... | ..++|.|  |++|+.|-|
T Consensus        44 ~PVlV~fWap-----~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vA----aqf-g-iqsIPtV~af~dGqpVdg  112 (304)
T COG3118          44 VPVLVDFWAP-----WCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVA----AQF-G-VQSIPTVYAFKDGQPVDG  112 (304)
T ss_pred             CCeEEEecCC-----CCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHH----HHh-C-cCcCCeEEEeeCCcCccc
Confidence            3566666552     599999999988775      2445667777766543    445 6 8999988  899999988


Q ss_pred             ch
Q 027825          142 VD  143 (218)
Q Consensus       142 ~d  143 (218)
                      |.
T Consensus       113 F~  114 (304)
T COG3118         113 FQ  114 (304)
T ss_pred             cC
Confidence            73

>PRK14280 chaperone protein DnaJ; Provisional

Probab=87.83  E-value=0.57  Score=43.69  Aligned_cols=49  Identities=35%  Similarity=0.906  Sum_probs=35.0

Q ss_pred             CcCCCCCCCcc------eeeCCCCCCCceeeecCC-------ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGAR------FVPCFDCGGSCKVVLANG-------DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~~-------~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+      ...|..|+|+-.++....       ....|+.|+=.|-+   +|+.|.
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  207 (376)
T PRK14280        143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCH  207 (376)
T ss_pred             eccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCC
Confidence            45788888876      457999999876654321       25689999888854   588885

>PRK14293 chaperone protein DnaJ; Provisional

Probab=87.77  E-value=0.49  Score=44.03  Aligned_cols=49  Identities=39%  Similarity=0.876  Sum_probs=36.0

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|..|+|+-.++..-    +   ...+|+.|+=.|-+   +|+.|.
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  207 (374)
T PRK14293        143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACG  207 (374)
T ss_pred             cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCC
Confidence            457888887654      5699999997765432    1   25789999999976   788874

>PRK14292 chaperone protein DnaJ; Provisional

Probab=87.76  E-value=0.51  Score=43.78  Aligned_cols=49  Identities=33%  Similarity=0.772  Sum_probs=36.4

Q ss_pred             CcCCCCCCCcc-------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGAR-------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~r-------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|+.|.|.+       ...|..|+|+-.+...-    +   ....|+.|+-.|..   +|+.|.
T Consensus       139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  204 (371)
T PRK14292        139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCR  204 (371)
T ss_pred             eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCC
Confidence            46799998876       46799999997665321    1   14689999999966   788885

>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]

Probab=87.25  E-value=1.4  Score=38.61  Aligned_cols=61  Identities=21%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             CChHHHHHHHHHhhCCCcEE--EEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecchhhHhHHH
Q 027825           85 TYEDCNRVRSTFEVNRVVTD--ERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELNE  150 (218)
Q Consensus        85 tc~~C~~vr~iL~~~gV~~~--erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~del~~l~e  150 (218)
                      .|++|+++-..|..+++.|.  .+|++.-+   ++++.++ . ...+|.|-.|++.+-..+.+.+..|
T Consensus        20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~s-p-~~~~P~l~~d~~~~tDs~~Ie~~Le   82 (221)
T KOG1422|consen   20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDIS-P-GGKPPVLKFDEKWVTDSDKIEEFLE   82 (221)
T ss_pred             CChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhC-C-CCCCCeEEeCCceeccHHHHHHHHH
Confidence            59999999999999999865  55665544   4577777 4 7889999999999988888766544

>PRK14297 chaperone protein DnaJ; Provisional

Probab=87.23  E-value=0.56  Score=43.77  Aligned_cols=49  Identities=31%  Similarity=0.838  Sum_probs=35.3

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|..|+|+-.++...    +   ...+|+.|+=.|.+   +|+.|.
T Consensus       148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  212 (380)
T PRK14297        148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCH  212 (380)
T ss_pred             eccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCC
Confidence            557888888764      5799999997665321    1   26789999888855   688874

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=87.14  E-value=0.56  Score=48.25  Aligned_cols=55  Identities=27%  Similarity=0.501  Sum_probs=35.1

Q ss_pred             EEEecchhhHhHHHhCcHHHHHhhhhhhc---ccCCcCCCCCCCcce------------eeCCCCCCCcee
Q 027825          137 RYVGGVDELTELNESGKLGRMLRSARVEM---GIGRQACEGCGGARF------------VPCFDCGGSCKV  192 (218)
Q Consensus       137 ~~IGG~del~~l~e~G~L~~lL~~~~~~~---~~~~~~C~~Cgg~rf------------v~C~~C~Gs~k~  192 (218)
                      .|+|-+|++++|..+-...+. .++...+   ...++.|+.|.|.++            |||+.|+|.+..
T Consensus       696 TYtg~Fd~IR~lFA~tpeAK~-rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn  765 (935)
T COG0178         696 TYTGVFDDIRELFAGTPEAKA-RGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN  765 (935)
T ss_pred             chhcchHHHHHHHhcChHHHH-cCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence            356678888877654333222 1221111   125689999999886            799999998653

>PRK10542 glutathionine S-transferase; Provisional

Probab=86.93  E-value=1.5  Score=35.94  Aligned_cols=67  Identities=9%  Similarity=0.039  Sum_probs=45.6

Q ss_pred             EEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHH---HHHHHHHHhCCCcccccEEEE-CCEEEecchhhHhH
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQ---FLNELKDLLGGETVTVPRVFI-KGRYVGGVDELTEL  148 (218)
Q Consensus        73 VlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~---~r~eLk~~~~g~~~tvPqVFI-~G~~IGG~del~~l  148 (218)
                      .||.+.       .+.+.+++-+|+.+||+|+.+.|+....   ..+++.++.  ....+|.+.+ +|..|-....|.+.
T Consensus         2 ~l~~~~-------~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~n--P~g~vPvL~~~~g~~l~eS~aI~~Y   72 (201)
T PRK10542          2 KLFYKP-------GACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAIN--PKGQVPALLLDDGTLLTEGVAIMQY   72 (201)
T ss_pred             ceeecc-------cHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhC--cCCCCCeEEeCCCcEeecHHHHHHH
Confidence            466655       2357788889999999999887765321   225677765  3778999987 56666655555543

>PRK14296 chaperone protein DnaJ; Provisional

Probab=86.89  E-value=0.63  Score=43.41  Aligned_cols=49  Identities=31%  Similarity=0.815  Sum_probs=34.5

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecC--C-----ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLAN--G-----DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~--~-----~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|..|+|+-.++...  +     ....|+.|+=-|-+   +|+.|.
T Consensus       149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~  213 (372)
T PRK14296        149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCK  213 (372)
T ss_pred             eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCC
Confidence            457888888764      5699999997665432  1     24588888887755   588884

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=86.75  E-value=1.9  Score=30.02  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=23.3

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECC
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVS  109 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs  109 (218)
                      |++|+..      .||+|..+...|+..      ++.+..+.+.
T Consensus         1 i~~f~d~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~   38 (98)
T cd02972           1 IVEFFDP------LCPYCYLFEPELEKLLYADDGGVRVVYRPFP   38 (98)
T ss_pred             CeEEECC------CCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence            4566666      599999998888663      5667777664

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione

Probab=86.65  E-value=2.4  Score=29.99  Aligned_cols=57  Identities=14%  Similarity=0.107  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhhCCCcEEEEECCC--CHHHHHHHHHHhCCCc-ccccEEEEC-CEEEecchhhH
Q 027825           88 DCNRVRSTFEVNRVVTDERDVSL--HGQFLNELKDLLGGET-VTVPRVFIK-GRYVGGVDELT  146 (218)
Q Consensus        88 ~C~~vr~iL~~~gV~~~erDVs~--d~~~r~eLk~~~~g~~-~tvPqVFI~-G~~IGG~del~  146 (218)
                      .+..++-+|+..|++|+.+.++.  .....+++.+..  .. ..+|.+-++ |..+-..-.|.
T Consensus        11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~--p~~g~vP~l~~~~~~~l~es~AI~   71 (76)
T PF02798_consen   11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAIN--PMFGKVPALEDGDGFVLTESNAIL   71 (76)
T ss_dssp             TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHT--TTSSSSSEEEETTTEEEESHHHHH
T ss_pred             chHHHHHHHHHhcccCceEEEecccccccchhhhhcc--cccceeeEEEECCCCEEEcHHHHH
Confidence            78999999999999999887654  333347777775  25 799999999 87776555443

The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....

>PRK14276 chaperone protein DnaJ; Provisional

Probab=86.55  E-value=0.68  Score=43.23  Aligned_cols=49  Identities=31%  Similarity=0.794  Sum_probs=34.5

Q ss_pred             CcCCCCCCCcce------eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF------VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf------v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.      ..|..|+|+-.+....    +   ....|+.|+=.|-+   +|+.|.
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  210 (380)
T PRK14276        146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCH  210 (380)
T ss_pred             cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCC
Confidence            557888888764      5799999987664432    1   15688888887754   588774

>PRK14278 chaperone protein DnaJ; Provisional

Probab=86.54  E-value=0.79  Score=42.80  Aligned_cols=49  Identities=33%  Similarity=0.763  Sum_probs=33.6

Q ss_pred             CcCCCCCCCcc------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGAR------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+      ...|+.|+|+-.++...    +   ....|+.|+=.|-+   +|+.|.
T Consensus       139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  203 (378)
T PRK14278        139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECA  203 (378)
T ss_pred             eccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCC
Confidence            45788888766      45789999886654322    1   14678888888743   688774

>PRK14296 chaperone protein DnaJ; Provisional

Probab=86.38  E-value=0.71  Score=43.05  Aligned_cols=38  Identities=32%  Similarity=0.781  Sum_probs=30.2

Q ss_pred             CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|+|.+.+               +|+.|+|.-++.     ...|+.|+-.|.+
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  218 (372)
T PRK14296        166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-----KNKCKNCKGKGKY  218 (372)
T ss_pred             CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-----cccccCCCCceEE
Confidence            4579999998764               799999998874     3559999988765

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=86.04  E-value=2.3  Score=31.19  Aligned_cols=54  Identities=13%  Similarity=0.207  Sum_probs=34.2

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI  134 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI  134 (218)
                      -+|.|+++|      |+.|+.+...|+..      .+.+-.+|++.+.  ..++.+.. + ...+|.+++
T Consensus        21 ~lv~f~a~w------C~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~-~-i~~~Pt~~~   80 (109)
T cd03002          21 TLVEFYAPW------CGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKY-G-VQGFPTLKV   80 (109)
T ss_pred             EEEEEECCC------CHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHc-C-CCcCCEEEE
Confidence            466777774      99999887665443      3456667776521  12344445 5 788998854

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=85.59  E-value=2.1  Score=34.22  Aligned_cols=58  Identities=12%  Similarity=0.083  Sum_probs=35.5

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE-E--CCEEE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF-I--KGRYV  139 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF-I--~G~~I  139 (218)
                      ||.|+++      .|+.|+.....|...      .+.|..+|++.+. + .++.+.. + ...+|.++ +  +|+.+
T Consensus        24 vV~F~A~------WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~-~-V~~iPt~v~~~~~G~~v   90 (142)
T cd02950          24 LVEFYAD------WCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRY-R-VDGIPHFVFLDREGNEE   90 (142)
T ss_pred             EEEEECC------cCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHc-C-CCCCCEEEEECCCCCEE
Confidence            4455555      499999888776542      3557777776432 2 2333444 5 77899874 5  46544

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=85.59  E-value=0.68  Score=39.57  Aligned_cols=27  Identities=22%  Similarity=0.652  Sum_probs=23.0

Q ss_pred             CcCCCCCCCcceee-----CCCCCCCceeeec
Q 027825          169 RQACEGCGGARFVP-----CFDCGGSCKVVLA  195 (218)
Q Consensus       169 ~~~C~~Cgg~rfv~-----C~~C~Gs~k~~~~  195 (218)
                      ...|+.|+|.++++     |..|+|+-++-..
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~  130 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT  130 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence            67899999999985     9999999777543

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14285 chaperone protein DnaJ; Provisional

Probab=85.35  E-value=0.85  Score=42.42  Aligned_cols=38  Identities=29%  Similarity=0.744  Sum_probs=30.3

Q ss_pred             CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.+           +|+.|+|.-++.     ...|+.|+-.|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  211 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-----SNPCKSCKGKGSL  211 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCccccc-----CCCCCCCCCCCEE
Confidence            4579999998754           899999998774     3469999988865

>PRK14282 chaperone protein DnaJ; Provisional

Probab=85.27  E-value=0.99  Score=41.95  Aligned_cols=39  Identities=28%  Similarity=0.740  Sum_probs=31.1

Q ss_pred             CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCccc
Q 027825          169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLVH  212 (218)
Q Consensus       169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~~  212 (218)
                      ...|..|.|.+.+               +|+.|+|+-++.     ...|+.|+-.|.+.
T Consensus       169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v~  222 (369)
T PRK14282        169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-----GEYCHECGGSGRIR  222 (369)
T ss_pred             CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-----CCCCCCCCCceeEE
Confidence            4579999999764               699999998773     35699999888653

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=84.95  E-value=2.9  Score=33.00  Aligned_cols=47  Identities=17%  Similarity=0.169  Sum_probs=29.5

Q ss_pred             ChHHHHHHHHH----hhC--CCcEEEEECCCCHHHH---HHHHHHhCCCcc-cccEEEE
Q 027825           86 YEDCNRVRSTF----EVN--RVVTDERDVSLHGQFL---NELKDLLGGETV-TVPRVFI  134 (218)
Q Consensus        86 c~~C~~vr~iL----~~~--gV~~~erDVs~d~~~r---~eLk~~~~g~~~-tvPqVFI  134 (218)
                      |+.|+.+.-+|    ..+  ++.|..+|+...+.++   .++.... + .. .+|.+.+
T Consensus        40 C~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~-~-I~~~iPT~~~   96 (119)
T cd02952          40 CPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP-K-LTTGVPTLLR   96 (119)
T ss_pred             CHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc-C-cccCCCEEEE
Confidence            99999776544    444  4789999997643222   3344433 3 45 7898854

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PRK14277 chaperone protein DnaJ; Provisional

Probab=84.95  E-value=0.89  Score=42.56  Aligned_cols=49  Identities=29%  Similarity=0.731  Sum_probs=33.0

Q ss_pred             CcCCCCCCCcc------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGAR------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+      ...|..|+|+-.++...    +   ....|+.|+=.|.+   +|+.|.
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  219 (386)
T PRK14277        155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCG  219 (386)
T ss_pred             eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCC
Confidence            45688887755      46788888886654322    1   14678888888855   577774

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=84.84  E-value=2.2  Score=30.83  Aligned_cols=58  Identities=17%  Similarity=0.379  Sum_probs=34.7

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhh--------CCCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV--------NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRY  138 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~--------~gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~  138 (218)
                      -+|.|+++|      |+.|+++...|..        ..+.+-.+|++.+.  -.++.... + ...+|.+  |-+|+.
T Consensus        20 ~~v~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~-~-i~~~Pt~~~~~~g~~   87 (104)
T cd02997          20 VLVMFYAPW------CGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE--HDALKEEY-N-VKGFPTFKYFENGKF   87 (104)
T ss_pred             EEEEEECCC------CHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc--cHHHHHhC-C-CccccEEEEEeCCCe
Confidence            367777775      9999988644422        23556677877621  12344445 5 6778877  445543

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=84.67  E-value=4.2  Score=33.52  Aligned_cols=74  Identities=20%  Similarity=0.324  Sum_probs=54.8

Q ss_pred             CCcEEEEEeecCCCCCCChHHHHHHHHHhhCCCcEEEEECCCCHHHHHHHHHHhCC---CcccccEEEECCEEEecc---
Q 027825           69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGG---ETVTVPRVFIKGRYVGGV---  142 (218)
Q Consensus        69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~~~erDVs~d~~~r~eLk~~~~g---~~~tvPqVFI~G~~IGG~---  142 (218)
                      ..++++|.++      +|.=|..--+.|+.+|+.+...+...    ...||+++ |   ...+-=...|+|.||=|-   
T Consensus        25 ~~~~~vyksP------nCGCC~~w~~~mk~~Gf~Vk~~~~~d----~~alK~~~-gIp~e~~SCHT~VI~Gy~vEGHVPa   93 (149)
T COG3019          25 ATEMVVYKSP------NCGCCDEWAQHMKANGFEVKVVETDD----FLALKRRL-GIPYEMQSCHTAVINGYYVEGHVPA   93 (149)
T ss_pred             eeeEEEEeCC------CCccHHHHHHHHHhCCcEEEEeecCc----HHHHHHhc-CCChhhccccEEEEcCEEEeccCCH
Confidence            4569999999      79999999999999998877766543    34566666 3   245667889999999875   


Q ss_pred             hhhHhHHHhCc
Q 027825          143 DELTELNESGK  153 (218)
Q Consensus       143 del~~l~e~G~  153 (218)
                      ++|.+|.+++.
T Consensus        94 ~aI~~ll~~~p  104 (149)
T COG3019          94 EAIARLLAEKP  104 (149)
T ss_pred             HHHHHHHhCCC
Confidence            55555555444

>PRK14280 chaperone protein DnaJ; Provisional

Probab=84.62  E-value=0.87  Score=42.46  Aligned_cols=38  Identities=34%  Similarity=0.946  Sum_probs=30.3

Q ss_pred             CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.+               +|+.|+|+-++.     ...|+.|+-.|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  212 (376)
T PRK14280        160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-----KEKCPTCHGKGKV  212 (376)
T ss_pred             CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-----cCCCCCCCCceEE
Confidence            4579999998754               799999998774     3569999988865

>PRK14283 chaperone protein DnaJ; Provisional

Probab=84.38  E-value=1  Score=42.04  Aligned_cols=49  Identities=31%  Similarity=0.822  Sum_probs=35.9

Q ss_pred             CcCCCCCCCcc------eeeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGAR------FVPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+      ...|..|+|+-.++...    +   ....|+.|+-.|..   +|..|.
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  210 (378)
T PRK14283        146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCH  210 (378)
T ss_pred             eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCC
Confidence            45788887754      46799999997765432    1   25789999999866   788885

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=84.35  E-value=2.4  Score=32.87  Aligned_cols=56  Identities=14%  Similarity=0.175  Sum_probs=37.7

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGR  137 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~  137 (218)
                      -+|.|+.+|      |+.|+.+...|++.      .+.+-.+|++.+.+.   ..+.. + ..++|.+  |.+|+
T Consensus        32 vlV~FyA~W------C~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~-~-I~~~PTl~lf~~g~   95 (113)
T cd03006          32 SLVMYYAPW------DAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQK-H-FFYFPVIHLYYRSR   95 (113)
T ss_pred             EEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhc-C-CcccCEEEEEECCc
Confidence            477788886      99999988777654      256778888866543   22233 3 5667766  66765

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=84.25  E-value=0.94  Score=42.48  Aligned_cols=38  Identities=32%  Similarity=0.904  Sum_probs=30.4

Q ss_pred             CcCCCCCCCcce-----------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARF-----------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rf-----------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|+|.+.           .+|+.|+|.-++.     ...|+.|+-.|.+
T Consensus       175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  223 (391)
T PRK14284        175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-----TDPCSVCRGQGRI  223 (391)
T ss_pred             CeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-----CCcCCCCCCccee
Confidence            467999999987           5899999997763     3469999888765

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=84.13  E-value=0.97  Score=43.01  Aligned_cols=49  Identities=33%  Similarity=0.729  Sum_probs=33.2

Q ss_pred             CcCCCCCCCcce-----eeCCCCCCCceeeecC--C-----ceeccCCcCcCCcc-----cCCCCC
Q 027825          169 RQACEGCGGARF-----VPCFDCGGSCKVVLAN--G-----DKQRCGVCNENGLV-----HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf-----v~C~~C~Gs~k~~~~~--~-----~~~rC~~CnenGl~-----~C~~C~  217 (218)
                      ...|..|.|.+.     ..|..|+|+-.++...  +     ....|+.|+=-|-+     +|+.|.
T Consensus       150 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~  215 (421)
T PTZ00037        150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCS  215 (421)
T ss_pred             cccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCC
Confidence            456888877663     5799999886543211  1     24588888888865     588885

>PRK14288 chaperone protein DnaJ; Provisional

Probab=84.13  E-value=1.1  Score=41.81  Aligned_cols=38  Identities=29%  Similarity=0.770  Sum_probs=30.4

Q ss_pred             CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|+|.+.+           +|+.|+|.-++.     ...|+.|+-.|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  204 (369)
T PRK14288        156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-----KTPCQACKGKTYI  204 (369)
T ss_pred             CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-----cccCccCCCcceE
Confidence            4679999999865           699999998874     3459999988765

>PRK14301 chaperone protein DnaJ; Provisional

Probab=84.12  E-value=0.88  Score=42.44  Aligned_cols=38  Identities=37%  Similarity=0.948  Sum_probs=30.1

Q ss_pred             CcCCCCCCCcce-----------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARF-----------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rf-----------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.           .+|..|+|.-++.     ...|+.|+-.|.+
T Consensus       161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  209 (373)
T PRK14301        161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-----THPCPKCKGSGIV  209 (373)
T ss_pred             CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-----CCCCCCCCCCcee
Confidence            357999999875           4799999998874     3469999987765

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=84.02  E-value=3.9  Score=30.22  Aligned_cols=53  Identities=15%  Similarity=0.289  Sum_probs=32.7

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhh----C---C--CcEEEEECCCCHHHHHHHHHHhCCCcccccEEE-ECC
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEV----N---R--VVTDERDVSLHGQFLNELKDLLGGETVTVPRVF-IKG  136 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~----~---g--V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF-I~G  136 (218)
                      ++.|+++      .|+.|+.....|+.    +   +  +.+...|++....    +.+.. + ..++|.++ ++|
T Consensus        19 lv~f~a~------wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~-~-I~~~Pt~~l~~~   81 (104)
T cd03000          19 LVDFYAP------WCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEF-G-VRGYPTIKLLKG   81 (104)
T ss_pred             EEEEECC------CCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhc-C-CccccEEEEEcC
Confidence            4556666      49999977655533    2   3  5566677766543    34444 5 77889884 444

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PRK14281 chaperone protein DnaJ; Provisional

Probab=83.98  E-value=0.99  Score=42.44  Aligned_cols=49  Identities=37%  Similarity=0.830  Sum_probs=33.5

Q ss_pred             CcCCCCCCCcce-----eeCCCCCCCceeeecC----C---ceeccCCcCcCCcc---cCCCCC
Q 027825          169 RQACEGCGGARF-----VPCFDCGGSCKVVLAN----G---DKQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~rf-----v~C~~C~Gs~k~~~~~----~---~~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+.     ..|..|+|+-.+....    +   ....|+.|+-.|.+   +|+.|.
T Consensus       163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  226 (397)
T PRK14281        163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACY  226 (397)
T ss_pred             eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCC
Confidence            456888877664     4689999987654322    1   14678888888854   688774

>PRK14276 chaperone protein DnaJ; Provisional

Probab=83.77  E-value=1  Score=42.06  Aligned_cols=38  Identities=32%  Similarity=0.725  Sum_probs=30.5

Q ss_pred             CcCCCCCCCcce---------------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARF---------------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.               .+|+.|+|.-++.     ..+|+.|+-.|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~~  215 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-----KEPCQTCHGTGHE  215 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-----cCCCCCCCCceEE
Confidence            457999999865               3799999998774     3569999988865

>PRK14279 chaperone protein DnaJ; Provisional

Probab=83.71  E-value=1.1  Score=42.20  Aligned_cols=38  Identities=29%  Similarity=0.941  Sum_probs=30.8

Q ss_pred             CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.+           +|+.|+|.-++.     ...|+.|+-.|.+
T Consensus       190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-----~~~C~~C~G~g~v  238 (392)
T PRK14279        190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-----EDPCEECKGTGVT  238 (392)
T ss_pred             CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-----CCcCCCCCCCeEE
Confidence            4679999998764           799999998874     3469999988765

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=83.62  E-value=6  Score=34.51  Aligned_cols=57  Identities=18%  Similarity=0.277  Sum_probs=37.9

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC----C--CcEEEEECCCCHHHHHHHHHHhCCCcccccEE--EECCEEE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN----R--VVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV  139 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~----g--V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqV--FI~G~~I  139 (218)
                      -+|.|+++|      |+.|+++...++..    .  +.+..+|++.+.    ++.+.. + ...+|.+  |-+|+.+
T Consensus        55 vlV~FyApW------C~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~-~-I~~~PTl~~f~~G~~v  119 (224)
T PTZ00443         55 WFVKFYAPW------CSHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRF-A-IKGYPTLLLFDKGKMY  119 (224)
T ss_pred             EEEEEECCC------ChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHc-C-CCcCCEEEEEECCEEE
Confidence            356677775      99999988776543    2  556677776654    344555 5 7788877  4577654

>PRK10767 chaperone protein DnaJ; Provisional

Probab=83.57  E-value=1.1  Score=41.63  Aligned_cols=38  Identities=37%  Similarity=0.824  Sum_probs=30.2

Q ss_pred             CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.+           +|+.|+|.-+..     ..+|+.|+-.|.+
T Consensus       159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  207 (371)
T PRK10767        159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-----KDPCKKCHGQGRV  207 (371)
T ss_pred             CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-----CCCCCCCCCCceE
Confidence            3579999998866           599999998773     3569999988865

>PRK14297 chaperone protein DnaJ; Provisional

Probab=83.57  E-value=1.1  Score=41.69  Aligned_cols=38  Identities=39%  Similarity=0.993  Sum_probs=30.6

Q ss_pred             CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.+               +|..|+|.-++.     ...|+.|+-.|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  217 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-----EDPCNKCHGKGKV  217 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-----CCCCCCCCCCeEE
Confidence            4579999999765               799999998774     3569999988865

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=83.45  E-value=5.4  Score=31.07  Aligned_cols=68  Identities=19%  Similarity=0.142  Sum_probs=47.3

Q ss_pred             CCCcEEEEEeecCCCCCCChHHHHHHHHHhhC------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEE--ECCEEE
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRYV  139 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVF--I~G~~I  139 (218)
                      ...+++||-=|.     +|+-+..|..-|+..      .+++..+||-.+...-.++.+.+ |-.-.-||++  -+|+.+
T Consensus        18 ~~~~~~iFKHSt-----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~-~V~HeSPQ~ili~~g~~v   91 (105)
T PF11009_consen   18 KEKPVLIFKHST-----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDF-GVKHESPQVILIKNGKVV   91 (105)
T ss_dssp             --SEEEEEEE-T-----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHH-T----SSEEEEEETTEEE
T ss_pred             ccCcEEEEEeCC-----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHh-CCCcCCCcEEEEECCEEE
Confidence            356799999886     699999988766553      28899999999999999999999 7677789985  478766


Q ss_pred             ec
Q 027825          140 GG  141 (218)
Q Consensus       140 GG  141 (218)
                      -.
T Consensus        92 ~~   93 (105)
T PF11009_consen   92 WH   93 (105)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=83.23  E-value=1  Score=28.34  Aligned_cols=28  Identities=29%  Similarity=0.668  Sum_probs=21.8

Q ss_pred             eeeCCCCCCCceeeec----CCceeccCCcCc
Q 027825          180 FVPCFDCGGSCKVVLA----NGDKQRCGVCNE  207 (218)
Q Consensus       180 fv~C~~C~Gs~k~~~~----~~~~~rC~~Cne  207 (218)
                      .+-|+.|+..-++-.+    .+..+||+.|.+
T Consensus         2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~   33 (37)
T PF13719_consen    2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH   33 (37)
T ss_pred             EEECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence            3679999999888654    345899999975

>PRK14277 chaperone protein DnaJ; Provisional

Probab=83.18  E-value=1.1  Score=41.97  Aligned_cols=38  Identities=29%  Similarity=0.720  Sum_probs=30.7

Q ss_pred             CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.+               +|+.|+|+-+...     .+|..|+-.|.+
T Consensus       172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-----~~C~~C~G~g~v  224 (386)
T PRK14277        172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT-----DPCNKCGGTGRI  224 (386)
T ss_pred             CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc-----CCCCCCCCCcEE
Confidence            4579999999754               7999999988742     469999988875

>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=83.04  E-value=5.6  Score=35.11  Aligned_cols=67  Identities=24%  Similarity=0.322  Sum_probs=47.5

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhCCCc--EEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEec----chh
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVV--TDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGG----VDE  144 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~gV~--~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG----~de  144 (218)
                      .|.||+--      ||-.|...-+.|+++|..  ++.+|-+....  ..++.   + .-++|.||+||+.+-+    .++
T Consensus        12 ~VkI~~Hk------tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~---~-V~SvP~Vf~DGel~~~dpVdp~~   79 (265)
T COG5494          12 EVKIFTHK------TCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEK---G-VISVPSVFIDGELVYADPVDPEE   79 (265)
T ss_pred             EEEEEEec------chHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhc---c-eeecceEEEcCeEEEcCCCCHHH
Confidence            58888887      899999999999998864  66666654432  12221   3 7899999999988632    355


Q ss_pred             hHhHH
Q 027825          145 LTELN  149 (218)
Q Consensus       145 l~~l~  149 (218)
                      +..+.
T Consensus        80 ies~~   84 (265)
T COG5494          80 IESIL   84 (265)
T ss_pred             HHHHH
Confidence            55544

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=82.93  E-value=5.3  Score=32.59  Aligned_cols=54  Identities=13%  Similarity=0.159  Sum_probs=35.7

Q ss_pred             EEEEEeecCCCCCCChHHHHHHHHHhhCC------CcEEEEECCCCHHHHHHHHHHhCCCcc-cccEE-EE-CCE
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNR------VVTDERDVSLHGQFLNELKDLLGGETV-TVPRV-FI-KGR  137 (218)
Q Consensus        72 VVlYttsl~giR~tc~~C~~vr~iL~~~g------V~~~erDVs~d~~~r~eLk~~~~g~~~-tvPqV-FI-~G~  137 (218)
                      ||-|+.+|      |+.|+.+--+|++.-      +.+..+||+..+++.++    . + .. .+|.+ |. +|+
T Consensus        27 VvdF~A~W------CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~----y-~-I~~~~t~~~ffk~g~   89 (142)
T PLN00410         27 VIRFGHDW------DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTM----Y-E-LYDPCTVMFFFRNKH   89 (142)
T ss_pred             EEEEECCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHH----c-C-ccCCCcEEEEEECCe
Confidence            45566775      999999988776642      45688999988765444    3 3 33 44666 44 554

>PRK14278 chaperone protein DnaJ; Provisional

Probab=82.82  E-value=1.1  Score=41.74  Aligned_cols=38  Identities=34%  Similarity=0.806  Sum_probs=30.4

Q ss_pred             CcCCCCCCCcce---------------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARF---------------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.               .+|+.|+|.-++..     ..|+.|+-.|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----~~C~~C~G~g~v  208 (378)
T PRK14278        156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP-----DPCHECAGDGRV  208 (378)
T ss_pred             ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC-----CCCCCCCCceeE
Confidence            457999999874               47999999988742     459999988865

>PRK14286 chaperone protein DnaJ; Provisional

Probab=82.78  E-value=1.1  Score=41.79  Aligned_cols=39  Identities=31%  Similarity=0.831  Sum_probs=30.7

Q ss_pred             CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCccc
Q 027825          169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLVH  212 (218)
Q Consensus       169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~~  212 (218)
                      ...|..|.|.+.+           +|+.|+|.-++.     ..+|+.|+-.|.+.
T Consensus       167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~~~  216 (372)
T PRK14286        167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-----SNPCKTCGGQGLQE  216 (372)
T ss_pred             CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-----cccCCCCCCCcEEe
Confidence            3579999998755           799999998774     24699999888764

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=82.74  E-value=4.1  Score=30.52  Aligned_cols=53  Identities=15%  Similarity=0.276  Sum_probs=34.7

Q ss_pred             CcEEEEEeecCCCCCCChHHHHHHHHHhhC-------CCcEEEEECCC-CHHHHHHHHHHhCCCcccccEEE
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-------RVVTDERDVSL-HGQFLNELKDLLGGETVTVPRVF  133 (218)
Q Consensus        70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~-------gV~~~erDVs~-d~~~r~eLk~~~~g~~~tvPqVF  133 (218)
                      .-++.|+++|      |+.|+++...|...       ++.+-.+|++. +..+   ..+.. + ...+|.++
T Consensus        23 ~vlv~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~---~~~~~-~-v~~~Pti~   83 (109)
T cd02993          23 STLVVLYAPW------CPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREF---AKEEL-Q-LKSFPTIL   83 (109)
T ss_pred             CEEEEEECCC------CHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhh---HHhhc-C-CCcCCEEE
Confidence            3477788885      99999988776542       46677777765 2322   22334 4 77899874

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PRK14298 chaperone protein DnaJ; Provisional

Probab=82.71  E-value=1.3  Score=41.35  Aligned_cols=38  Identities=37%  Similarity=0.878  Sum_probs=30.3

Q ss_pred             CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.+               +|+.|+|.-+..     ..+|+.|+-.|.+
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  210 (377)
T PRK14298        158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-----ESPCPVCSGTGKV  210 (377)
T ss_pred             CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-----CCCCCCCCCccEE
Confidence            3679999999854               799999997763     3469999988865

>PRK14300 chaperone protein DnaJ; Provisional

Probab=82.55  E-value=1.2  Score=41.37  Aligned_cols=38  Identities=26%  Similarity=0.782  Sum_probs=29.1

Q ss_pred             CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+++           +|+.|+|.-+..     ...|+.|+-.|.+
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  210 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-----KNPCKKCHGMGRY  210 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-----CCCCCCCCCceEE
Confidence            4579999998765           689999887773     3568888887765

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.53  E-value=2  Score=40.83  Aligned_cols=63  Identities=22%  Similarity=0.350  Sum_probs=44.4

Q ss_pred             CCCcEEEEEeecCCCCCCChHHHHHHHHHhhCC-----CcEEEEECCCCHHHHHHHHHHhCCCcccccEEEECCEEEecc
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNR-----VVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGV  142 (218)
Q Consensus        68 ~~~kVVlYttsl~giR~tc~~C~~vr~iL~~~g-----V~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI~G~~IGG~  142 (218)
                      ++=..--|.+-      +|..|-.|.+.|.-+-     |...-+|   ..-|++|..++.   ...+|.||.+|+..|.-
T Consensus       116 g~~~FETy~Sl------tC~nCPDVVQALN~msvlNp~I~H~~Id---Ga~Fq~Evear~---IMaVPtvflnGe~fg~G  183 (520)
T COG3634         116 GDFHFETYFSL------TCHNCPDVVQALNLMSVLNPRIKHTAID---GALFQDEVEARN---IMAVPTVFLNGEEFGQG  183 (520)
T ss_pred             CceeEEEEEEe------eccCChHHHHHHHHHHhcCCCceeEEec---chhhHhHHHhcc---ceecceEEEcchhhccc
Confidence            44456677776      5777777777776553     3344444   356788888763   88999999999988754

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=81.51  E-value=4.2  Score=32.11  Aligned_cols=60  Identities=12%  Similarity=0.141  Sum_probs=39.6

Q ss_pred             CCcEEEEEeecCCCCCCChHHHHHHHHHhhC-----C-CcEEEEECCCCHHHHHHHHHHhCCCcccccE--EEECCEEE
Q 027825           69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----R-VVTDERDVSLHGQFLNELKDLLGGETVTVPR--VFIKGRYV  139 (218)
Q Consensus        69 ~~kVVlYttsl~giR~tc~~C~~vr~iL~~~-----g-V~~~erDVs~d~~~r~eLk~~~~g~~~tvPq--VFI~G~~I  139 (218)
                      ...|||-++.-     .|+.|+.+-.+|.+.     + +.|-.+||+..+++.+++     + -...|.  +|-+|+||
T Consensus        14 ~klVVVdF~a~-----WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y-----~-I~amPtfvffkngkh~   81 (114)
T cd02986          14 EKVLVLRFGRD-----EDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYF-----D-ISYIPSTIFFFNGQHM   81 (114)
T ss_pred             CCEEEEEEeCC-----CChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhc-----C-ceeCcEEEEEECCcEE
Confidence            34455544442     599999998888764     3 668899999877765443     2 333444  57789886

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PRK14294 chaperone protein DnaJ; Provisional

Probab=81.30  E-value=1.4  Score=40.94  Aligned_cols=38  Identities=37%  Similarity=0.830  Sum_probs=29.6

Q ss_pred             CcCCCCCCCccee-----------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.+           +|+.|+|.-+..     ...|+.|+-.|.+
T Consensus       161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  209 (366)
T PRK14294        161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-----VSPCKTCHGQGRV  209 (366)
T ss_pred             cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-----CcCCCCCCCceEe
Confidence            3579999998754           799999998874     3569999887765

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=81.29  E-value=1.5  Score=41.78  Aligned_cols=41  Identities=24%  Similarity=0.696  Sum_probs=31.8

Q ss_pred             CcCCCCCCCcce---------------eeCCCCCCCceeeecCCceeccCCcCcCCccc
Q 027825          169 RQACEGCGGARF---------------VPCFDCGGSCKVVLANGDKQRCGVCNENGLVH  212 (218)
Q Consensus       169 ~~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~~  212 (218)
                      ...|..|.|.+.               .+|..|+|+-+++..   ..+|+.|+-.|.++
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~---~~~C~~C~G~g~v~  221 (421)
T PTZ00037        166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE---SKKCKNCSGKGVKK  221 (421)
T ss_pred             CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc---cccCCcCCCcceee
Confidence            457999999884               389999999877542   35699999888764

>PRK14295 chaperone protein DnaJ; Provisional

Probab=81.25  E-value=1.3  Score=41.47  Aligned_cols=38  Identities=32%  Similarity=0.772  Sum_probs=30.3

Q ss_pred             CcCCCCCCCcce-----------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARF-----------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rf-----------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|.|.+.           .+|+.|+|.-++.     ...|+.|+-.|.+
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~~  231 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-----DDPCLVCKGSGRA  231 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-----ccCCCCCCCCceE
Confidence            467999999875           5899999998874     3569999988765

>PRK14290 chaperone protein DnaJ; Provisional

Probab=81.23  E-value=1.5  Score=40.75  Aligned_cols=38  Identities=32%  Similarity=0.809  Sum_probs=30.0

Q ss_pred             CcCCCCCCCcce---------------eeCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARF---------------VPCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|+|.+.               .+|+.|+|.-+..     ...|+.|+-.|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  217 (365)
T PRK14290        165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-----EEKCPRCNGTGTV  217 (365)
T ss_pred             CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-----cCCCCCCCCceeE
Confidence            457999999884               4899999998762     4579999887765

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=80.98  E-value=1.6  Score=40.23  Aligned_cols=39  Identities=33%  Similarity=0.877  Sum_probs=30.6

Q ss_pred             CcCCCCCCCcce---------------eeCCCCCCCceeeecCCceeccCCcCcCCccc
Q 027825          169 RQACEGCGGARF---------------VPCFDCGGSCKVVLANGDKQRCGVCNENGLVH  212 (218)
Q Consensus       169 ~~~C~~Cgg~rf---------------v~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~~  212 (218)
                      ...|..|.|.+.               .+|..|+|+-+...     ..|+.|+-.|.+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----~~C~~C~G~g~v~  213 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK-----EPCSTCKGKGRVK  213 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC-----CCCCCCCCCcEec
Confidence            457999999764               47999999988743     3599999888764

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>TIGR00595 priA primosomal protein N'

Probab=80.97  E-value=1.6  Score=42.39  Aligned_cols=48  Identities=29%  Similarity=0.622  Sum_probs=36.9

Q ss_pred             CCcCCCCCCCcceeeCCCCCCCceeeecCCceeccCCcCcCC--cccCCCCCC
Q 027825          168 GRQACEGCGGARFVPCFDCGGSCKVVLANGDKQRCGVCNENG--LVHCPACSS  218 (218)
Q Consensus       168 ~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~rC~~CnenG--l~~C~~C~~  218 (218)
                      +.-.|..||-  -+.|+.|+++...+. +...++|..|+-.-  -..||.|.+
T Consensus       212 ~~~~C~~Cg~--~~~C~~C~~~l~~h~-~~~~l~Ch~Cg~~~~~~~~Cp~C~s  261 (505)
T TIGR00595       212 KNLLCRSCGY--ILCCPNCDVSLTYHK-KEGKLRCHYCGYQEPIPKTCPQCGS  261 (505)
T ss_pred             CeeEhhhCcC--ccCCCCCCCceEEec-CCCeEEcCCCcCcCCCCCCCCCCCC
Confidence            3457999997  467999999966644 45589999998765  457999964

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=80.96  E-value=3.8  Score=31.35  Aligned_cols=54  Identities=17%  Similarity=0.116  Sum_probs=32.4

Q ss_pred             cEEEEEeecCCCCCCChHHHHHHHHHhhC---------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN---------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI  134 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~vr~iL~~~---------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI  134 (218)
                      -|+.|+++|      |+.|+.....++..         .+.+-.+|.+.+.  -.++.+.. + ...+|++++
T Consensus        22 vvV~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~-~-i~~~Pt~~l   84 (114)
T cd02992          22 WLVEFYASW------CGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDF-G-VTGYPTLRY   84 (114)
T ss_pred             EEEEEECCC------CHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhC-C-CCCCCEEEE
Confidence            355666775      99999887766442         1445555654332  23444445 5 778898854

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PRK14281 chaperone protein DnaJ; Provisional

Probab=80.94  E-value=1.6  Score=41.00  Aligned_cols=38  Identities=39%  Similarity=0.924  Sum_probs=30.6

Q ss_pred             CcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          169 RQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       169 ~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ...|..|+|.+.+               +|+.|+|.-++.     ..+|+.|+-.|.+
T Consensus       179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  231 (397)
T PRK14281        179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-----KDRCPACYGEGIK  231 (397)
T ss_pred             CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-----CCCCCCCCCCccE
Confidence            4579999998753               699999998874     2469999988876

>PRK14289 chaperone protein DnaJ; Provisional

Probab=80.89  E-value=1.6  Score=40.81  Aligned_cols=39  Identities=36%  Similarity=0.949  Sum_probs=30.4

Q ss_pred             CCcCCCCCCCccee---------------eCCCCCCCceeeecCCceeccCCcCcCCcc
Q 027825          168 GRQACEGCGGARFV---------------PCFDCGGSCKVVLANGDKQRCGVCNENGLV  211 (218)
Q Consensus       168 ~~~~C~~Cgg~rfv---------------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~  211 (218)
                      ....|..|.|.+.+               +|+.|+|.-+..     ..+|+.|+-.|.+
T Consensus       170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v  223 (386)
T PRK14289        170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-----KKKCKKCGGEGIV  223 (386)
T ss_pred             CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-----CcCCCCCCCCcEE
Confidence            35679999997665               799999997663     3569999988865

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=80.48  E-value=4.6  Score=29.04  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=33.1

Q ss_pred             CcEEEEEeecCCCCCCChHHHHHHHHHhhC--------CCcEEEEECCCCHHHHHHHHHHhCCCcccccEEEE
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN--------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI  134 (218)
Q Consensus        70 ~kVVlYttsl~giR~tc~~C~~vr~iL~~~--------gV~~~erDVs~d~~~r~eLk~~~~g~~~tvPqVFI  134 (218)
                      .-+|.|+++|      |+.|+.....|+..        .+.+..+|.+.+     ++.... + ...+|.+++
T Consensus        20 ~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~-~-~~~~Pt~~~   79 (104)
T cd02995          20 DVLVEFYAPW------CGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEF-V-VDGFPTILF   79 (104)
T ss_pred             cEEEEEECCC------CHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhc-c-CCCCCEEEE
Confidence            3466777785      99999887766442        255666777654     233333 4 578898754

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=80.19  E-value=5.8  Score=33.68  Aligned_cols=57  Identities=12%  Similarity=0.247  Sum_probs=37.4

Q ss_pred             cEEEEEeecCCCCCCChHHHHH----HHHHhhCCCcEEEEECCCCH-----H----HHHHHHHHhCCC-cccccEEEE
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRV----RSTFEVNRVVTDERDVSLHG-----Q----FLNELKDLLGGE-TVTVPRVFI  134 (218)
Q Consensus        71 kVVlYttsl~giR~tc~~C~~v----r~iL~~~gV~~~erDVs~d~-----~----~r~eLk~~~~g~-~~tvPqVFI  134 (218)
                      ++|+|..+|      |++|++.    +++-+++++.+.-+.++.+.     -    -...+.+.. |. ...+|..|+
T Consensus        72 ~lV~Fwasw------Cp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~-g~~~~~iPttfL  142 (181)
T PRK13728         72 KVVLFMQGH------CPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFF-PNIPVATPTTFL  142 (181)
T ss_pred             eEEEEECCC------CHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHh-CCCCCCCCeEEE
Confidence            488999996      9999987    66667778887666654221     0    113344455 42 258999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	218
2khp_A	92	Solution Structure Of Glutaredoxin From Brucella Me		8e-04

>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella Melitensis Length = 92

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 66  PGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGE 125
           PG    V+IYT      R     C R ++         +E D S   +   E+++  G  
Sbjct: 2   PGSMVDVIIYT------RPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRN 55
Query: 126 TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARV 163
           T   P++FI   +VGG D+L  L + GKL  +L++ ++
Sbjct: 56  TF--PQIFIGSVHVGGCDDLYALEDEGKLDSLLKTGKL 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	4e-28
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	1e-22
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	1e-20
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	4e-13
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	1e-12
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	5e-12
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	8e-12
1kte_A	105	Thioltransferase; redox-active center, electron tr	2e-11
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	6e-11
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	2e-10
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	2e-10
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	3e-10
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	3e-10
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	3e-10
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	7e-10
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	9e-10
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	1e-09
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	4e-09
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	4e-05
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	4e-05
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	6e-05
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	8e-05
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	9e-05
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	1e-04
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	1e-04
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	5e-04
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	8e-04
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	9e-04

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A Length = 93

 Score =  101 bits (252), Expect = 4e-28
 Identities = 22/92 (23%), Positives = 37/92 (40%)

Query: 70  DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTV 129
            G+ +Y+TS+ G R      + V    +  R+     D+S      +E++ L G    T 
Sbjct: 2   SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATP 61

Query: 130 PRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           P++     Y G  +   E  E   L   L+ A
Sbjct: 62  PQIVNGNHYCGDYELFVEAVEQDTLQEFLKLA 93

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A Length = 121

 Score = 88.1 bits (218), Expect = 1e-22
 Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGET----- 126
           + +Y  S  G     +    V    E N++  +E+D++ + +    +++ +   +     
Sbjct: 2   IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATG 61

Query: 127 -VTVPRVFIKGRYVGGVDELTELNESGKLGRMLR 159
               P++F + +Y G  D   E  E+  +   L 
Sbjct: 62  YPLPPQIFNESQYRGDYDAFFEARENNAVYAFLG 95

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 82.3 bits (203), Expect = 1e-20
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 71  GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGET---- 126
            + ++  S  G     +    V    E N++  +E D+++  +    +   +  E     
Sbjct: 9   VIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQ 68

Query: 127 --VTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
                P++F   RY G  D   E  ES  +   L   
Sbjct: 69  GNPLPPQIFNGDRYCGDYDSFFESKESNTVFSFLGLK 105

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 61.8 bits (151), Expect = 4e-13
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           V+IYT         Y  C R ++         +E D S   +   E+++  G  T   P+
Sbjct: 8   VIIYTRPGCP----Y--CARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTF--PQ 59

Query: 132 VFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           +FI   +VGG D+L  L + GKL  +L++ 
Sbjct: 60  IFIGSVHVGGCDDLYALEDEGKLDSLLKTG 89

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 60.7 bits (148), Expect = 1e-12
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           + IYT S       +  C R  +  +   V   E  +    +    +     G+  ++P+
Sbjct: 18  IEIYTWSTCP----F--CMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKR-SLPQ 70

Query: 132 VFIKGRYVGGVDELTELNESGKLGRMLRS 160
           +FI  +++GG D++  L+ +GKL  +L S
Sbjct: 71  IFIDDQHIGGCDDIYALDGAGKLDPLLHS 99

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 58.7 bits (143), Expect = 5e-12
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 8/88 (9%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           V IYT         Y  C+R ++      V   E  +  +     E+    G  TV  P+
Sbjct: 3   VEIYTKETCP----Y--CHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTV--PQ 54

Query: 132 VFIKGRYVGGVDELTELNESGKLGRMLR 159
           +FI  +++GG D+L  L+  G L  +L+
Sbjct: 55  IFIDAQHIGGYDDLYALDARGGLDPLLK 82

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score = 59.3 bits (144), Expect = 8e-12
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 12/95 (12%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTD-----ERDVSLHGQFLNELKDLLGGET 126
           ++I++ S      T      ++   E            E D   HG+ L E   L+ G  
Sbjct: 16  IIIFSKS------TCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRG 69

Query: 127 VTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
            TVP + + G   GG +E+ +L+  GKL   L+  
Sbjct: 70  -TVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQVW 103

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 12/95 (12%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTF-----EVNRVVTDERDVSLHGQFLNELKDLLGGET 126
           VV++          +  C + +        +   +   +   +     + +    L G  
Sbjct: 14  VVVFIKPTCP----F--CRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGAR 67

Query: 127 VTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
            TVPRVFI    +GG  +L  +++ G+L   L+  
Sbjct: 68  -TVPRVFIGKECIGGCTDLESMHKRGELLTRLQQV 101

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFE---VNRVVTDERDVSLHGQFLNELKDLLGGETVT 128
           VVIY+ +       Y  C  V++ F+   V  +V +   +   G  L ++ + L G+  T
Sbjct: 21  VVIYSKTWCS----Y--CTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQH-T 73

Query: 129 VPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           VP VF+ G+++GG  +  +LN  G L  ML  A
Sbjct: 74  VPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 106

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           +++YT         Y  C R R   +   V   + D S       E+     G   T P+
Sbjct: 8   IILYTRPNCP----Y--CKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANGRN-TFPQ 58

Query: 132 VFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           +FI   +VGG D+L  L   GKL  +L+  
Sbjct: 59  IFIGDYHVGGCDDLYALENKGKLDSLLQDV 88

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 13/94 (13%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFE---VNRVVTDERDVSLHGQFL-NELKDLLGGETV 127
           VV+++ +  G    Y  CNRV+        +  V  E D    G  L + L    G  TV
Sbjct: 22  VVVFSKTYCG----Y--CNRVKQLLTQVGASYKVV-ELDELSDGSQLQSALAHWTGRGTV 74

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
             P VFI G+ +GG D + E ++  +L  +L+ A
Sbjct: 75  --PNVFIGGKQIGGCDTVVEKHQRNELLPLLQDA 106

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFE---VNRVVTDERDVSLHGQFLNELKDLLGGETVT 128
           VVI++ S       +    RV+  F    V   V  E D    G  + E+   +  +  T
Sbjct: 19  VVIFSKSYCP----H--STRVKELFSSLGVECNVL-ELDQVDDGARVQEVLSEITNQK-T 70

Query: 129 VPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           VP +F+   +VGG D+  +  +SG L ++L+  
Sbjct: 71  VPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQED 103

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 21/96 (21%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRST------FEVNRVVTDERDVSLHGQFLNELKDLLGGE 125
           + + + +       Y  C+   +T         ++V+  + +    G  +      + G+
Sbjct: 27  IFVASKTYCP----Y--CHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQ 80

Query: 126 TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
             TVP ++I G+++GG D+L EL E+G+L  +L   
Sbjct: 81  R-TVPNIYINGKHIGGNDDLQELRETGELEELLEPI 115

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFE---VNRVVTDERDVSLHG---QFLNELKDLLGGE 125
           V I+          +  C             R   +  D+       +  +  + + GG+
Sbjct: 21  VTIFVKYTCP----F--CRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGK 74

Query: 126 TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           TV  PR+F     +GG  +L E++    LG +L S 
Sbjct: 75  TV--PRIFFGKTSIGGYSDLLEIDNMDALGDILSSI 108

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score = 54.8 bits (132), Expect = 7e-10
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 11/93 (11%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFE---VNRVVTDERDVSLHGQFLNELKDLLGGETVT 128
           VVI++ +       Y  C   +  F    VN  V  E D+  +G    +    + GE  T
Sbjct: 51  VVIFSKTSCS----Y--CTMAKKLFHDMNVNYKVV-ELDLLEYGNQFQDALYKMTGER-T 102

Query: 129 VPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           VPR+F+ G ++GG  +   L++ GKL  ++   
Sbjct: 103 VPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 135

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 53.9 bits (130), Expect = 9e-10
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRV--VTDERDVSLHGQFLNELKDLLGGETVTV 129
           VVI++ +       Y  C   +  F    V     E D+  +G    +    + GE  TV
Sbjct: 29  VVIFSKTSCS----Y--CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER-TV 81

Query: 130 PRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           PR+F+ G ++GG  +   L++ GKL  ++   
Sbjct: 82  PRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC 113

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 13/95 (13%)

Query: 72  VVIYTTSL-----RGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFL-NELKDLLGGE 125
           V +   +        +   +++ N  +S   V      E D   +G  + + L+++ G +
Sbjct: 39  VFVAAKTYCPYCKATLSTLFQELNVPKSKALVL-----ELDEMSNGSEIQDALEEISGQK 93

Query: 126 TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRS 160
           TV  P V+I G+++GG  +L  L ++GKL  +L+ 
Sbjct: 94  TV--PNVYINGKHIGGNSDLETLKKNGKLAEILKP 126

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 54.7 bits (131), Expect = 4e-09
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           TVP ++I G+++GG D+L EL E+G+L  +L   
Sbjct: 318 TVPNIYINGKHIGGNDDLQELRETGELEELLEPI 351

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85

 Score = 44.6 bits (106), Expect = 9e-07
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFE-----VNRVVTDERDVSLHGQFLNELKDLLGGET 126
            VI+  S       Y  C R +   E      +       D+   G    +L+   G   
Sbjct: 3   TVIFGRSGCP----Y--CVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPV 56

Query: 127 VTVPRVFIKGRYVGGVDELTELNE 150
            TVP++F+  +++GG  +     +
Sbjct: 57  ETVPQIFVDQQHIGGYTDFAAWVK 80

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 55/198 (27%)

Query: 38  MEREKEGKQAKYEKLIRDLLSDFPE------------------------KCPPGGSDGVV 73
           M+ E    Q +Y+ ++      F +                              S  + 
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 74  IYTTSL----RGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTV 129
           ++ T L      V++  E+  R+   F ++ + T++R  S+  +   E +D L       
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL----YND 122

Query: 130 PRVFIKGRYVGGVDELTELNESGKLGRMLRSARVE-------M-GIGRQ--ACEGCGGAR 179
            +VF K   V  +    +L ++      L   R         + G G+   A + C   +
Sbjct: 123 NQVFAK-YNVSRLQPYLKLRQA------LLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 180 FVPCFDCG------GSCK 191
                D         +C 
Sbjct: 176 VQCKMDFKIFWLNLKNCN 193

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} Length = 109

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           T P+++I G + GG D   E  ++G+L   +  A
Sbjct: 73  TFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKA 106

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 Length = 109

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 12/37 (32%), Positives = 24/37 (64%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVE 164
           T P+++++G  VGG+D + EL ++G+L  +L+     
Sbjct: 70  TYPQLYVRGDLVGGLDIVKELKDNGELLPILKGESGP 106

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae} Length = 121

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 11/36 (30%), Positives = 23/36 (63%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARV 163
           T+P++++   ++GG D +T +  SG+L  +L  A+ 
Sbjct: 74  TIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQA 109

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens} Length = 111

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEM 165
           T P++++ G  +GG+D + EL  S +L  +   A   +
Sbjct: 71  TYPQLYVSGELIGGLDIIKELEASEELDTICPKAAENL 108

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A Length = 135

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 23/37 (62%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVE 164
           T P++++ G  VGG D + E+ + G+L ++++    +
Sbjct: 90  TFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAK 126

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} Length = 105

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 128 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRS 160
           T P++++KG  VGG+D + EL E+G+L  +LR 
Sbjct: 72  TYPQLYVKGELVGGLDIVKELKENGELLPILRG 104

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Length = 89

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 13/85 (15%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQF------LNELKDLLGGE 125
           V IYT +       Y  C   +  FE N +  DE  +  + Q       +N+   ++   
Sbjct: 6   VKIYTRNGCP----Y--CVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPI 59

Query: 126 TVTVPRVFIKGRYVGGVDELTELNE 150
           + TVP++FI   ++GG  EL    +
Sbjct: 60  S-TVPQIFIDDEHIGGFTELKANAD 83

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Length = 75

 Score = 36.1 bits (84), Expect = 8e-04
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           + +YT            C   +   +   +  +  D+SL  +  + +  L  G     P 
Sbjct: 3   ITLYTKPACV------QCTATKKALDRAGLAYNTVDISLDDEARDYVMAL--GYV-QAPV 53

Query: 132 VFIKGRYVGG--VDELTELNES 151
           V + G +  G   + + +L  +
Sbjct: 54  VEVDGEHWSGFRPERIKQLQAA 75

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 16/95 (16%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 69  SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRV--VTDERDVSLHGQFLNELKDLLGGET 126
           S  V++++ +      T   C +V+      ++   T E D   +G  + +         
Sbjct: 17  SAAVILFSKT------TCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIE 70

Query: 127 VTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
            TVP++F++G+++G    + +   + +L  ++  +
Sbjct: 71  -TVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d1t1va_	93	c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax	8e-24
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	1e-11
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	6e-10
d1ktea_	105	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	3e-08
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-06
d1h75a_	76	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch	1e-04
d1r7ha_	74	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Cory	3e-04
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	6e-04

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.8 bits (220), Expect = 8e-24
 Identities = 22/91 (24%), Positives = 37/91 (40%)

Query: 71  GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVP 130
           G+ +Y+TS+ G R      + V    +  R+     D+S      +E++ L G    T P
Sbjct: 3   GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPP 62

Query: 131 RVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           ++     Y G  +   E  E   L   L+ A
Sbjct: 63  QIVNGNHYCGDYELFVEAVEQDTLQEFLKLA 93

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 56.9 bits (137), Expect = 1e-11
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           V IYT            C+R ++      V   E  +  +     E+    G  TV  P+
Sbjct: 3   VEIYTKETCP------YCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTV--PQ 54

Query: 132 VFIKGRYVGGVDELTELNESGKLGRMLR 159
           +FI  +++GG D+L  L+  G L  +L+
Sbjct: 55  IFIDAQHIGGYDDLYALDARGGLDPLLK 82

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (126), Expect = 6e-10
 Identities = 17/93 (18%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 69  SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVT 128
              V+++    +   +      ++        V  +  D+    +    LK        T
Sbjct: 14  KASVMLFMKGNKQEAK-CGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNW--PT 70

Query: 129 VPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
            P+++++G  VGG+D + EL ++G+L  +L+  
Sbjct: 71  YPQLYVRGDLVGGLDIVKELKDNGELLPILKGE 103

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.8 bits (113), Expect = 3e-08
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 69  SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDE-----RDVSLHGQFLNELKDLLG 123
              VV++         T   C + +                    +     + +    L 
Sbjct: 11  PGKVVVFIKP------TCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLT 64

Query: 124 GETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 161
           G   TVPRVFI    +GG  +L  +++ G+L   L+  
Sbjct: 65  GAR-TVPRVFIGKECIGGCTDLESMHKRGELLTRLQQV 101

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 42.3 bits (99), Expect = 2e-06
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 72  VVIYTTSL----RGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETV 127
            VI+  S        +   E  +  R  F+         D+   G    +L+   G    
Sbjct: 3   TVIFGRSGCPYCVRAKDLAEKLSNERDDFQY-----QYVDIRAEGITKEDLQQKAGKPVE 57

Query: 128 TVPRVFIKGRYVGGVDELTELNE 150
           TVP++F+  +++GG  +     +
Sbjct: 58  TVPQIFVDQQHIGGYTDFAAWVK 80

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 11/82 (13%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           + IYT +          C+  +   E      +  +V    +    L+         +P 
Sbjct: 3   ITIYTRNDCV------QCHATKRAMENRGFDFEMINVDRVPEAAEALRAQ---GFRQLPV 53

Query: 132 VFIKGRYVGGV--DELTELNES 151
           V        G   D +  L+ +
Sbjct: 54  VIAGDLSWSGFRPDMINRLHPA 75

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

 Score = 35.8 bits (82), Expect = 3e-04
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           + +YT            C   +   +   +  +  D+SL  +  + +  L     V  P 
Sbjct: 3   ITLYTKP------ACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALGY---VQAPV 53

Query: 132 VFIKGRYVGGV--DELTEL 148
           V + G +  G   + + +L
Sbjct: 54  VEVDGEHWSGFRPERIKQL 72

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.3 bits (81), Expect = 6e-04
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 72  VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPR 131
           + I+T            C + +       +  +E  +  H   +  ++ + G  TV  P+
Sbjct: 7   ISIFTKPGCP------FCAKAKQLLHDKGLSFEEIILG-HDATIVSVRAVSGRTTV--PQ 57

Query: 132 VFIKGRYVGGVDELTE 147
           VFI G+++GG D+L +
Sbjct: 58  VFIGGKHIGGSDDLEK 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	99.85
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	99.82
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.8
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	99.79
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	99.55
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.52
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	99.51
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	99.49
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	99.41
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.41
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.32
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	97.82
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.82
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	97.65
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	97.63
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	97.58
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	97.46
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	97.45
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	97.29
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	97.27
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	97.03
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	96.93
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	96.84
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	96.81
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	96.67
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	96.56
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	96.49
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	96.41
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	96.36
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	96.15
d2a2ra2	77	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	95.92
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	95.73
d1j9ba_	138	Arsenate reductase ArsC {Escherichia coli [TaxId:	95.28
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	95.24
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	94.83
d2cvda2	74	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	94.57
d1gula2	77	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	94.52
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	94.09
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	94.05
d1k3ya2	79	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	93.96
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	93.82
d1b48a2	78	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	93.67
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	93.58
d1okta2	85	Pf GST {Malarial parasite (Plasmodium falciparum)	93.29
d2gsqa2	75	Class sigma GST {Squid (Ommastrephes sloani pacifi	93.28
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	93.13
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	92.97
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	92.86
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	92.73
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	92.66
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	92.49
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	92.43
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	92.04
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	92.04
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	90.97
d1fhea2	80	Class alpha GST {Fasciola hepatica [TaxId: 6192]}	90.83
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	90.31
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	90.3
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	89.69
d1m0ua2	76	Class sigma GST {Fruit fly (Drosophila melanogaste	89.18
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	88.28
d2c4ja2	84	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	87.87
d1tu7a2	77	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	87.06
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	86.84
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	86.06
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	85.41
d1tw9a2	77	Class sigma GST {Heligmosomoides polygyrus [TaxId:	85.4
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	85.08
d1duga2	80	Class alpha GST {Schistosoma japonicum [TaxId: 618	84.88
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	84.49
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	84.12
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	83.78
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	82.69
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	80.57

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.4e-21  Score=145.61  Aligned_cols=91  Identities=23%  Similarity=0.395  Sum_probs=85.3

Q ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHHH
Q ss_conf             82899990058998999479999999966899489998899999999999996998621128998998971130457689
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        70 ~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l~  149 (218)
                      ..|+||+||++++|++..+|.++++||++++|+|+++||+.|...+++++++.+.+..++|||||+|+||||+|++.+++
T Consensus         2 ~~i~vy~ts~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv~~~~iGg~del~~~~   81 (93)
T d1t1va_           2 SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAV   81 (93)
T ss_dssp             CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEEECCEEEECHHHHHHHH
T ss_conf             97799981576771149999999999998799649997157366777888860689850689999998994699999999


Q ss_pred             HHCCHHHHHHH
Q ss_conf             70929999765
Q 027825          150 ESGKLGRMLRS  160 (218)
Q Consensus       150 e~G~L~~lL~~  160 (218)
                      |+|+|.++|+.
T Consensus        82 e~g~L~~~lk~   92 (93)
T d1t1va_          82 EQDTLQEFLKL   92 (93)
T ss_dssp             HTTCHHHHTTC
T ss_pred             HCCCHHHHHCC
T ss_conf             77989999543

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=2.2e-20  Score=138.52  Aligned_cols=94  Identities=18%  Similarity=0.304  Sum_probs=85.2

Q ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHH
Q ss_conf             99828999900589989994799999999668994899988999999999999969986211289989989711304576
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        68 ~~~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~  147 (218)
                      .+++||||+++. ...+.|+||.+|+++|+.+++.|+++|+..+.+.+++|.+++ + +.++|||||+|++|||+|++++
T Consensus        13 ~~~~VvvF~Kgt-~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t-~-~~TvPqIFi~g~~IGG~ddl~~   89 (109)
T d1wika_          13 NKASVMLFMKGN-KQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS-N-WPTYPQLYVRGDLVGGLDIVKE   89 (109)
T ss_dssp             TTSSEEEEESST-TTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH-S-CCSSCEEECSSSEEECHHHHHH
T ss_pred             HCCCEEEEECCC-CCCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHC-C-CCCCCEEEECCEEECCHHHHHH
T ss_conf             539889996789-999988389999999996078854997534177899999855-9-9978868899989868899999


Q ss_pred             HHHHCCHHHHHHHHHHH
Q ss_conf             89709299997652231
Q 027825          148 LNESGKLGRMLRSARVE  164 (218)
Q Consensus       148 l~e~G~L~~lL~~~~~~  164 (218)
                      |+++|+|.++|+..+..
T Consensus        90 l~~~G~L~~lL~~~~~~  106 (109)
T d1wika_          90 LKDNGELLPILKGESGP  106 (109)
T ss_dssp             HHHHTCSHHHHHTCCSC
T ss_pred             HHHCCCHHHHHHHCCCC
T ss_conf             99879899999753797

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=99.80  E-value=6.5e-20  Score=135.71  Aligned_cols=82  Identities=29%  Similarity=0.485  Sum_probs=78.4

Q ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHHH
Q ss_conf             82899990058998999479999999966899489998899999999999996998621128998998971130457689
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTELN  149 (218)
Q Consensus        70 ~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l~  149 (218)
                      +.|+||+++      +|++|.+++++|+.++|+|+++||+.+...+++|.+.+ | ..++|||||+|++|||++++.+|+
T Consensus         1 a~I~iys~~------~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~-g-~~tvP~i~i~~~~IGG~~el~~l~   72 (82)
T d1fova_           1 ANVEIYTKE------TCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRS-G-RTTVPQIFIDAQHIGGYDDLYALD   72 (82)
T ss_dssp             CCEEEEECS------SCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHH-S-SCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCEEEEECC------CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH-C-CCCCCEEEECCEEEECHHHHHHHH
T ss_conf             968999479------99759999999987499817870522199999999984-8-987886999998985679999999


Q ss_pred             HHCCHHHHHH
Q ss_conf             7092999976
Q 027825          150 ESGKLGRMLR  159 (218)
Q Consensus       150 e~G~L~~lL~  159 (218)
                      ++|+|+++|+
T Consensus        73 ~~g~L~~lLk   82 (82)
T d1fova_          73 ARGGLDPLLK   82 (82)
T ss_dssp             HTTCSHHHHC
T ss_pred             HCCCHHHHHC
T ss_conf             8698889819

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.79  E-value=1.6e-19  Score=133.47  Aligned_cols=89  Identities=22%  Similarity=0.340  Sum_probs=77.7

Q ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCC-----EEEEECCCCHHH-HHHHHHHHCCCCCCCCEEEECCEEEEC
Q ss_conf             99828999900589989994799999999668994-----899988999999-999999969986211289989989711
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVV-----TDERDVSLHGQF-LNELKDLLGGETVTVPRVFIKGRYVGG  141 (218)
Q Consensus        68 ~~~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~-----~eerDVs~d~~~-r~EL~~~~~g~~~tvPqIFI~G~~IGG  141 (218)
                      .+++|+||+++      +||+|.+++++|+.+++.     |+++|+..|... ++.+++.. | +.++|||||+|++|||
T Consensus        10 ~~~~Vviysk~------~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~-g-~~tvPqIfi~g~~IGG   81 (105)
T d1ktea_          10 QPGKVVVFIKP------TCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLT-G-ARTVPRVFIGKECIGG   81 (105)
T ss_dssp             CTTCEEEEECS------SCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHH-S-CCCSCEEEETTEEEES
T ss_pred             CCCCEEEEECC------CCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCC-C-CCCCCEEEECCEEEEC
T ss_conf             15979999779------99059999999998398444124652035664188888885036-7-8767679999979836


Q ss_pred             CHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             30457689709299997652231
Q 027825          142 VDELTELNESGKLGRMLRSARVE  164 (218)
Q Consensus       142 ~dei~~l~e~G~L~~lL~~~~~~  164 (218)
                      ++++.+|+++|+|.++|+.+++.
T Consensus        82 ~~el~~l~~~G~L~~~L~~~Ga~  104 (105)
T d1ktea_          82 CTDLESMHKRGELLTRLQQVGAV  104 (105)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHTCB
T ss_pred             HHHHHHHHHCCCHHHHHHHCCCC
T ss_conf             89999999879899999974898

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.55  E-value=4.4e-15  Score=107.01  Aligned_cols=71  Identities=23%  Similarity=0.455  Sum_probs=62.8

Q ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHH
Q ss_conf             99828999900589989994799999999668994899988999999999999969986211289989989711304576
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        68 ~~~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~  147 (218)
                      .+.+|+||+++      +|++|.+|+++|+.++++|+++|++.+.. ++++.+.. | ..++|||||+|++|||++++.+
T Consensus         3 ~~~~I~iYs~~------~C~~C~~ak~lL~~~~i~~~~~~v~~~~~-~~~~~~~~-~-~~tvP~i~i~g~~IGG~~el~~   73 (74)
T d1nm3a1           3 VQESISIFTKP------GCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVS-G-RTTVPQVFIGGKHIGGSDDLEK   73 (74)
T ss_dssp             CCCCEEEEECS------SCHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHT-C-CSSSCEEEETTEEEESHHHHHH
T ss_pred             CCCCEEEEECC------CCHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHH-C-CCCCCEEEECCEEEECHHHHHH
T ss_conf             76728999789------99779999999997499729997168699-99999982-9-9658889999989977587852

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=2.4e-15  Score=108.62  Aligned_cols=75  Identities=21%  Similarity=0.338  Sum_probs=64.4

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCC-----CCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHH
Q ss_conf             289999005899899947999999996689-----948999889999999999999699862112899899897113045
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNR-----VVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDEL  145 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~g-----V~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei  145 (218)
                      +|+||+++      +|++|.+++++|+.++     +.|+++|++.+.+.++++.+..+....++|||||+|++|||++++
T Consensus         2 kvviysk~------~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi~g~~IGG~~el   75 (85)
T d1egoa_           2 QTVIFGRS------GCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDF   75 (85)
T ss_dssp             EEEEECCT------TSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHH
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECHHHH
T ss_conf             89999579------997699999999982997777339999657898999999998358999879899999999778999


Q ss_pred             HHHHHH
Q ss_conf             768970
Q 027825          146 TELNES  151 (218)
Q Consensus       146 ~~l~e~  151 (218)
                      .++.++
T Consensus        76 ~~~~~~   81 (85)
T d1egoa_          76 AAWVKE   81 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999986

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=99.51  E-value=4.8e-14  Score=100.89  Aligned_cols=64  Identities=20%  Similarity=0.385  Sum_probs=59.4

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCH
Q ss_conf             2899990058998999479999999966899489998899999999999996998621128998998971130
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVD  143 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~d  143 (218)
                      +|+||+++      +|++|.+++++|+.+++.|+++||+.+.+..++++..  | ..++|||||+|++||||+
T Consensus         2 ~v~iYt~~------~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~~--g-~~tvP~i~i~g~~igGf~   65 (74)
T d1r7ha_           2 SITLYTKP------ACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMAL--G-YVQAPVVEVDGEHWSGFR   65 (74)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHT--T-CBCCCEEEETTEEEESCC
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH--C-CCCCCEEEECCEEEECCC
T ss_conf             89999489------8960899999999739964899724898999999984--7-997097999999995889

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=3.9e-14  Score=101.38  Aligned_cols=71  Identities=18%  Similarity=0.258  Sum_probs=63.3

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECC--HHHHHH
Q ss_conf             289999005899899947999999996689948999889999999999999699862112899899897113--045768
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGV--DELTEL  148 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~--dei~~l  148 (218)
                      +|+||+++      +|++|.+++++|+.++|.|+++||+.+.+..++++. . | ..++|+|||+|++||||  |.+.+|
T Consensus         2 ki~iYs~~------~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~~~~-~-g-~~tvP~i~i~~~~i~Gf~~d~i~~L   72 (76)
T d1h75a_           2 RITIYTRN------DCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-Q-G-FRQLPVVIAGDLSWSGFRPDMINRL   72 (76)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-T-T-CCSSCEEEETTEEEESCCHHHHGGG
T ss_pred             EEEEEECC------CCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHH-C-C-CCCCCEEEECCEEEECCCHHHHHHH
T ss_conf             89999389------895379999999862953689860589999999886-1-7-9977989999999977898999887


Q ss_pred             HH
Q ss_conf             97
Q 027825          149 NE  150 (218)
Q Consensus       149 ~e  150 (218)
                      ++
T Consensus        73 ~~   74 (76)
T d1h75a_          73 HP   74 (76)
T ss_dssp             SC
T ss_pred             HC
T ss_conf             52

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.41  E-value=4.3e-13  Score=95.23  Aligned_cols=76  Identities=22%  Similarity=0.374  Sum_probs=60.3

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC-----CHHHHHHHHHHHC---CCCCCCCEEEE-CCEEEECC
Q ss_conf             899990058998999479999999966899489998899-----9999999999969---98621128998-99897113
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL-----HGQFLNELKDLLG---GETVTVPRVFI-KGRYVGGV  142 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~-----d~~~r~EL~~~~~---g~~~tvPqIFI-~G~~IGG~  142 (218)
                      +.||+.+  +....|++|.+|+++|+.+++.|+++++..     +...++++.+..+   .+..|+||||| ||+||||+
T Consensus         2 ~~Iy~~~--~~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~   79 (87)
T d1abaa_           2 FKVYGYD--SNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGF   79 (87)
T ss_dssp             EEEEECC--TTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESH
T ss_pred             EEEEEEC--CCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEECEEEECCCCEEECH
T ss_conf             8999718--99998855999999999809985233643121213799999999995366789964273996399598779


Q ss_pred             HHHHHHH
Q ss_conf             0457689
Q 027825          143 DELTELN  149 (218)
Q Consensus       143 dei~~l~  149 (218)
                      ++++++.
T Consensus        80 del~e~~   86 (87)
T d1abaa_          80 DQLREYF   86 (87)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
T ss_conf             9999985

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=4.1e-08  Score=65.67  Aligned_cols=79  Identities=13%  Similarity=0.213  Sum_probs=60.2

Q ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEE--ECCHHH
Q ss_conf             998289999005899899947999999996689948999889999999999999699862112899899897--113045
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYV--GGVDEL  145 (218)
Q Consensus        68 ~~~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~I--GG~dei  145 (218)
                      ....|++|+++      +|+.|+.++.+|+.+...|..+++..|.+...+|.+.. + . .+|+|||+|+.+  |.+++ 
T Consensus        15 ~~p~i~lft~~------~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y-~-~-~VPvl~idg~~~~~g~~d~-   84 (100)
T d1wjka_          15 ALPVLTLFTKA------PCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERY-K-F-DIPVFHLNGQFLMMHRVNT-   84 (100)
T ss_dssp             CCCEEEEEECS------SCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHS-S-S-SCSEEEESSSEEEESSCCH-
T ss_pred             CCCEEEEEECC------CCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHH-C-C-CCCCEEECCCEEEECCCCH-
T ss_conf             99789998799------99975999999998643235699863564579999985-6-6-5773364696479678999-


Q ss_pred             HHHHHHCCHHHHHHHHH
Q ss_conf             76897092999976522
Q 027825          146 TELNESGKLGRMLRSAR  162 (218)
Q Consensus       146 ~~l~e~G~L~~lL~~~~  162 (218)
                            .+|++.|+.+.
T Consensus        85 ------~~L~~~L~~l~   95 (100)
T d1wjka_          85 ------SKLEKQLRKLS   95 (100)
T ss_dssp             ------HHHHHHHHSSS
T ss_pred             ------HHHHHHHHHHH
T ss_conf             ------99999999976

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.32  E-value=1.6e-06  Score=56.15  Aligned_cols=72  Identities=14%  Similarity=0.116  Sum_probs=53.2

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEEC--CHHHHH
Q ss_conf             2899990058998999479999999966-8994899988999999999999969986211289989989711--304576
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV-NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGG--VDELTE  147 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~-~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG--~dei~~  147 (218)
                      .|+|||++      +|+.|..++.+|.. .++.|+++||+.|+    +|.++. +  ..+|+|.+++..+-+  +|+   
T Consensus         1 altLyt~~------~C~LCe~A~~~l~~~~~~~~~~vdI~~d~----~l~~~y-~--~~IPVl~~~~~~~l~w~fd~---   64 (75)
T d1ttza_           1 ALTLYQRD------DCHLCDQAVEALAQARAGAFFSVFIDDDA----ALESAY-G--LRVPVLRDPMGRELDWPFDA---   64 (75)
T ss_dssp             CEEEEECS------SCHHHHHHHHHHHHTTCCCEEEEECTTCH----HHHHHH-T--TTCSEEECTTCCEEESCCCH---
T ss_pred             CEEEECCC------CCCHHHHHHHHHHHCCCCCEEEEECCCCH----HHHHHH-C--CEEEEEEECCEEEECCCCCH---
T ss_conf             98999889------96179999999986069847999745899----999974-9--80139997991398586599---


Q ss_pred             HHHHCCHHHHHHHHH
Q ss_conf             897092999976522
Q 027825          148 LNESGKLGRMLRSAR  162 (218)
Q Consensus       148 l~e~G~L~~lL~~~~  162 (218)
                          .+|+++|.++|
T Consensus        65 ----~~l~~~L~~~~   75 (75)
T d1ttza_          65 ----PRLRAWLDAAP   75 (75)
T ss_dssp             ----HHHHHHHHTCC
T ss_pred             ----HHHHHHHHCCC
T ss_conf             ----99999985499

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=3.7e-05  Score=48.08  Aligned_cols=67  Identities=13%  Similarity=0.234  Sum_probs=55.8

Q ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEE-CCEEEECCHHHHHHH
Q ss_conf             99990058998999479999999966899489998899999999999996998621128998-998971130457689
Q 027825           73 VIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI-KGRYVGGVDELTELN  149 (218)
Q Consensus        73 vIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI-~G~~IGG~dei~~l~  149 (218)
                      .||+..      .||+|++|+.+|..++++|+.+.+..+.  .+++.+++ + ..++|++.. ||+.|.....+.+.-
T Consensus         2 kLY~~~------~cP~~~rvr~~l~~kgi~~e~~~~~~~~--~~~~~~~~-p-~~~VP~L~~~dg~~i~eS~~I~~yL   69 (75)
T d1g7oa2           2 KLYIYD------HCPYCLKARMIFGLKNIPVELHVLLNDD--AETPTRMV-G-QKQVPILQKDDSRYMPESMDIVHYV   69 (75)
T ss_dssp             EEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTT--THHHHHHH-S-SSCCCEEEETTTEEEECHHHHHHHH
T ss_pred             EEECCC------CCCCHHHHHHHHHHHCCCCCCCCCCCCC--HHHHHHHC-C-CCCEEEEEECCCCEEECHHHHHHHH
T ss_conf             897268------9972087999999719874322212116--39999769-8-8824799976997985699999999

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.82  E-value=3.3e-05  Score=48.38  Aligned_cols=63  Identities=21%  Similarity=0.315  Sum_probs=48.7

Q ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEE-C
Q ss_conf             99828999900589989994799999999668-----99489998899999999999996998621128998998971-1
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVG-G  141 (218)
Q Consensus        68 ~~~kVvIYttsl~giR~tc~~C~~vr~lL~~~-----gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IG-G  141 (218)
                      ++-.+++|+++      +|++|+.+..+|+..     .|.+..+|++.+.+.    .+.. + ..++|.+|++|+.++ |
T Consensus        15 ~~~~i~~F~s~------~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l----~~~~-~-I~~vPt~~~ng~~~~~G   82 (96)
T d1hyua4          15 GDFEFETYYSL------SCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNE----ITER-N-VMGVPAVFVNGKEFGQG   82 (96)
T ss_dssp             SCEEEEEEECT------TCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHH----HHHT-T-CCSSSEEEETTEEEEES
T ss_pred             CCEEEEEEECC------CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHH----HHHC-C-CCCCCEEEECCEEEEEC
T ss_conf             98399999999------98426889999999887577618999863106477----7542-5-53242999999998860


Q ss_pred             C
Q ss_conf             3
Q 027825          142 V  142 (218)
Q Consensus       142 ~  142 (218)
                      .
T Consensus        83 ~   83 (96)
T d1hyua4          83 R   83 (96)
T ss_dssp             C
T ss_pred             C
T ss_conf             7

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.65  E-value=9e-05  Score=45.80  Aligned_cols=74  Identities=14%  Similarity=0.034  Sum_probs=59.0

Q ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHH
Q ss_conf             99828999900589989994799999999668994899988999999999999969986211289989989711304576
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        68 ~~~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~  147 (218)
                      .+++++||...      .|++|++|+..|..+|+.|+.+.++... ..+++.+++ .....+|.+..+|..|.....+.+
T Consensus         2 ~~~~l~Ly~~~------~Sp~~~rvr~~L~~kgi~~e~~~v~~~~-~~~~~~~~n-P~~g~vP~L~~~g~~l~eS~~I~~   73 (84)
T d1oyja2           2 EEKELVLLDFW------VSPFGQRCRIAMAEKGLEFEYREEDLGN-KSDLLLRSN-PVHRKIPVLLHAGRPVSESLVILQ   73 (84)
T ss_dssp             CSCCEEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTS-CCHHHHHHS-TTTCCSCEEEETTEEEESHHHHHH
T ss_pred             CCCCEEEECCC------CCHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHC-CCCCCCCEEEECCCEEECHHHHHH
T ss_conf             87766998278------9858999999999719980899971676-887888658-986825689989906772999999


Q ss_pred             HH
Q ss_conf             89
Q 027825          148 LN  149 (218)
Q Consensus       148 l~  149 (218)
                      .-
T Consensus        74 YL   75 (84)
T d1oyja2          74 YL   75 (84)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=7.5e-05  Score=46.27  Aligned_cols=74  Identities=14%  Similarity=0.083  Sum_probs=57.8

Q ss_pred             CCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEE-CCEEEECCHH
Q ss_conf             999982899990058998999479999999966899489998899999999999996998621128998-9989711304
Q 027825           66 PGGSDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI-KGRYVGGVDE  144 (218)
Q Consensus        66 p~~~~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI-~G~~IGG~de  144 (218)
                      |..++++.||...      .|++|++|+.+|..+|+.|+.+.|+... ..+++.++. . ...+|.+.. +|..|.....
T Consensus        14 ~~~~~~~~Ly~~~------~sP~~~rv~~~l~~kgi~~e~~~v~~~~-~~~~~~~~n-P-~g~VPvL~~~dg~~i~eS~a   84 (98)
T d1eema2          14 PVPEGSIRIYSMR------FCPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKN-P-FGLVPVLENSQGQLIYESAI   84 (98)
T ss_dssp             CCCTTCEEEEECT------TCHHHHHHHHHHHHTTCCEEEEEBCTTS-CCGGGGGTC-T-TCCSCEEEETTCCEEESHHH
T ss_pred             CCCCCCEEEECCC------CCHHHHHHHHHHHHHCCCCEEEEECCCC-CCHHHHHHH-C-CCCCEEEEECCCCEECCHHH
T ss_conf             9999818998579------9867999999999949997899963667-868887531-1-44301599589989718999


Q ss_pred             HHHH
Q ss_conf             5768
Q 027825          145 LTEL  148 (218)
Q Consensus       145 i~~l  148 (218)
                      +.+.
T Consensus        85 I~~Y   88 (98)
T d1eema2          85 TCEY   88 (98)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=97.58  E-value=8.7e-05  Score=45.90  Aligned_cols=70  Identities=10%  Similarity=0.048  Sum_probs=56.3

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             289999005899899947999999996689948999889999999999999699862112899899897113045768
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      .+.||...      +|++|++|+.+|..+++.|+.+.+..... .+++.+.. .....+|.+..+|..|.....+.+.
T Consensus         3 ~mkLy~~~------~sp~~~rvr~~l~~kgi~~e~~~v~~~~~-~~~~~~~~-~~~~~~p~l~~dg~~i~eS~~I~~Y   72 (83)
T d1gwca2           3 DLKLLGAW------PSPFVTRVKLALALKGLSYEDVEEDLYKK-SELLLKSN-PVHKKIPVLIHNGAPVCESMIILQY   72 (83)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHS-TTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHCCCCEEEEEEECCCH-HHHHHHHH-HCCCCCCEEECCCCEECCHHHHHHH
T ss_conf             28997268------98489999999998799719998742300-68999998-5048886241499457589999999

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.46  E-value=0.00023  Score=43.42  Aligned_cols=71  Identities=17%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             2899990058998999479999999966899489998899--99999999999699862112899899897113045768
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL--HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~--d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      |+.||...      .|++|++++.+|+.+++.|+.+.|+.  ......++.+.. . ...+|.+..+|..+.....+.+.
T Consensus         1 ~m~Ly~~~------~sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~~~~~~~~~-p-~~~vPvL~~~~~~l~eS~aI~~y   72 (80)
T d1e6ba2           1 KLKLYSYW------RSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKIN-P-MGTVPALVDGDVVINDSFAIIMY   72 (80)
T ss_dssp             CCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHC-T-TCCSSEEEETTEEEESHHHHHHH
T ss_pred             CEEEEECC------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCC-C-CCCCCEEEECCEEEECHHHHHHH
T ss_conf             97999479------9968999999999959987899971343434408884048-6-66688899899898889999999


Q ss_pred             H
Q ss_conf             9
Q 027825          149 N  149 (218)
Q Consensus       149 ~  149 (218)
                      .
T Consensus        73 L   73 (80)
T d1e6ba2          73 L   73 (80)
T ss_dssp             H
T ss_pred             H
T ss_conf             9

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=97.45  E-value=0.00045  Score=41.65  Aligned_cols=69  Identities=12%  Similarity=0.072  Sum_probs=56.9

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC-CHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             899990058998999479999999966899489998899-99999999999699862112899899897113045768
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL-HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~-d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      +.||...      .+++|++|+.+|+.+|+.|+.+.|+. ..+.++++.+.. . ...+|.+..+|..+-....+.+.
T Consensus         1 m~LY~~~------~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~n-P-~g~VP~L~~~g~~l~eS~aI~~Y   70 (83)
T d1v2aa2           1 MDYYYSL------ISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLN-P-QHTIPTLVDNGHVVWESYAIVLY   70 (83)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC-T-TCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEECCC------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH-H-CCCCCEEEECCCEEECHHHHHHH
T ss_conf             9897899------986799999999993998469998188871057899875-3-16877789846206849999999

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00039  Score=42.02  Aligned_cols=76  Identities=9%  Similarity=0.042  Sum_probs=58.1

Q ss_pred             CEEEEEEECCC--CCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             28999900589--9899947999999996689948999889999999999999699862112899899897113045768
Q 027825           71 GVVIYTTSLRG--VRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVvIYttsl~g--iR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      .+.||.+.-.-  ....||+|++++.+|..+++.|+.+.|++.. ..+++++++ . ...+|.+..+|..|.....+.+.
T Consensus         2 ~i~l~~ka~~dg~~~~~cPf~~rv~~~L~~kgi~~~~~~v~~~~-~~~~~~~~n-P-~~~vPvL~~~~~~i~eS~~I~~Y   78 (86)
T d1k0ma2           2 QVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKR-RTETVQKLC-P-GGELPFLLYGTEVHTDTNKIEEF   78 (86)
T ss_dssp             CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHC-T-TCCSSEEEETTEEEECHHHHHHH
T ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CCHHHHHHH-C-CCCEEEEEECCCCCCCHHHHHHH
T ss_conf             58999713799572888872999999999979995788733122-417889871-1-69615999826545569999999


Q ss_pred             H
Q ss_conf             9
Q 027825          149 N  149 (218)
Q Consensus       149 ~  149 (218)
                      -
T Consensus        79 L   79 (86)
T d1k0ma2          79 L   79 (86)
T ss_dssp             H
T ss_pred             H
T ss_conf             9

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=97.27  E-value=0.00013  Score=44.92  Aligned_cols=69  Identities=13%  Similarity=0.191  Sum_probs=53.1

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEEC----CEEEECCHHHH
Q ss_conf             28999900589989994799999999668994899988999999999999969986211289989----98971130457
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIK----GRYVGGVDELT  146 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~----G~~IGG~dei~  146 (218)
                      +++||...      +||+|++|+..|..++++|+.++++...  ++++ ... + ...+|.+.++    |+.++....+.
T Consensus         2 ~i~LY~~~------~sP~~~kvr~~L~~k~l~~~~~~v~~~~--~~~~-~~~-~-~~~vP~l~~~~~~~g~~i~eS~~Ii   70 (113)
T d1z9ha2           2 QLTLYQYK------TCPFCSKVRAFLDFHALPYQVVEVNPVL--RAEI-KFS-S-YRKVPILVAQEGESSQQLNDSSVII   70 (113)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTT--CGGG-TTC-S-CCSSCEEEEEETTEEEEECSHHHHH
T ss_pred             EEEEECCC------CCHHHHHHHHHHHHCCCEEEEECCCCCC--CHHH-CCC-C-CCCCCCCCCCCCCCCEEEECHHHHH
T ss_conf             89998379------9858999999999749805874057432--1011-247-5-1023311136677735861689999


Q ss_pred             HHHH
Q ss_conf             6897
Q 027825          147 ELNE  150 (218)
Q Consensus       147 ~l~e  150 (218)
                      +.-+
T Consensus        71 ~YL~   74 (113)
T d1z9ha2          71 SALK   74 (113)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.0013  Score=38.86  Aligned_cols=72  Identities=7%  Similarity=0.010  Sum_probs=54.6

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHHHHCCCCCCCCEEEE---CCEEEECCH
Q ss_conf             98289999005899899947999999996689948999889999--9999999996998621128998---998971130
Q 027825           69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHG--QFLNELKDLLGGETVTVPRVFI---KGRYVGGVD  143 (218)
Q Consensus        69 ~~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~--~~r~EL~~~~~g~~~tvPqIFI---~G~~IGG~d  143 (218)
                      ...++||...      .|++|.+|+.+|+.+|++|+.+.|+...  ....++.+.. . ...+|.+..   +|..|....
T Consensus         3 ~~~~tLY~~~------~sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n-p-~g~vP~L~d~~~~~~~l~ES~   74 (92)
T d1k0da2           3 LEGYTLFSHR------SAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVN-P-NARVPALIDHGMDNLSIWESG   74 (92)
T ss_dssp             SSSEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTC-T-TCCSCEEEEGGGTTEEEESHH
T ss_pred             CCCEEEEECC------CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHH-H-CCCCCEEEEECCCCEEECCHH
T ss_conf             8766995079------9955899999999869997898850367765689999875-2-046532687313504771799


Q ss_pred             HHHHH
Q ss_conf             45768
Q 027825          144 ELTEL  148 (218)
Q Consensus       144 ei~~l  148 (218)
                      .+.+.
T Consensus        75 aI~~Y   79 (92)
T d1k0da2          75 AILLH   79 (92)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99999

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0018  Score=38.14  Aligned_cols=71  Identities=18%  Similarity=0.194  Sum_probs=55.7

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHH
Q ss_conf             28999900589989994799999999668994899988999----99999999996998621128998998971130457
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH----GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELT  146 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d----~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~  146 (218)
                      |-|||...      .+++|++++.+|..+|+.|+.+.|+..    .....++.++. . ..++|.+..+|..|.....+.
T Consensus         1 kpiLY~~~------~S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~n-P-~g~vP~L~~~g~~i~eS~aI~   72 (83)
T d1fw1a2           1 KPILYSYF------RSSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALN-P-MKQVPTLKIDGITIHQSLAII   72 (83)
T ss_dssp             CCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHC-T-TCCSCEEEETTEEEESHHHHH
T ss_pred             CCEEECCC------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHC-C-CCCCCEEEECCEEEECHHHHH
T ss_conf             99998689------984899999999991999789961344455443898998764-4-772588998999874699999


Q ss_pred             HHH
Q ss_conf             689
Q 027825          147 ELN  149 (218)
Q Consensus       147 ~l~  149 (218)
                      +.-
T Consensus        73 ~yL   75 (83)
T d1fw1a2          73 EYL   75 (83)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=96.84  E-value=0.0022  Score=37.59  Aligned_cols=70  Identities=14%  Similarity=0.128  Sum_probs=56.0

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCC--CHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             2899990058998999479999999966899489998899--99999999999699862112899899897113045768
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSL--HGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~--d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      .++||...      .+++|++|+.+|+.+++.|+.+.|+.  .....+++.++. - ...+|.+-.+|..|.....+.+.
T Consensus         1 t~iLY~~~------~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n-P-~g~vP~L~~~~~~l~ES~aI~~Y   72 (85)
T d1r5aa2           1 TTVLYYLP------ASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELN-P-QHCIPTMDDHGLVLWESRVILSY   72 (85)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTC-T-TCCSSEEEETTEEEECHHHHHHH
T ss_pred             CEEEECCC------CCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHH-H-CCCCCEEEECCCCEECHHHHHHH
T ss_conf             97998389------9875999999999809998899966888652799999887-6-58987889866122269999999

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=96.81  E-value=0.00034  Score=42.41  Aligned_cols=70  Identities=10%  Similarity=0.061  Sum_probs=55.6

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             28999900589989994799999999668994899988999--9999999999699862112899899897113045768
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d--~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      ++.||...      .+++|++++.+|..+++.|+.+.|+..  .....++.+.. . ..++|.+..+|..|.....+.+.
T Consensus         2 pm~Ly~~~------~sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n-P-~g~vP~L~~~~~~l~eS~aI~~Y   73 (81)
T d1aw9a2           2 PLKLYGMP------LSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALN-P-FGQIPALVDGDEVLFESRAINRY   73 (81)
T ss_dssp             CEEEESCT------TCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTC-T-TCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEEECC------CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH-H-CCEEEEEEECCCEEECHHHHHHH
T ss_conf             89999479------9935999999999669997899965777512259998876-4-37057999899099779999999

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=96.67  E-value=0.0014  Score=38.74  Aligned_cols=70  Identities=10%  Similarity=-0.026  Sum_probs=55.6

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             28999900589989994799999999668994899988999--9999999999699862112899899897113045768
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d--~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      .+.||...      ++++|.+|+.+|+.+|+.|+.++|+..  .....++.++. . ...+|.+..+|..+.....+.+.
T Consensus         2 p~~Ly~~~------~S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~n-P-~g~VP~L~~~~~~l~ES~aI~~Y   73 (80)
T d1axda2           2 PMKLYGAV------MSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRN-P-FGQVPALQDGDLYLFESRAICKY   73 (80)
T ss_dssp             CEEEESCT------TCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTC-T-TCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEEECC------CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH-C-CCCCCEEEECCEEEECHHHHHHH
T ss_conf             89999789------9968999999999819998899966876511069999863-0-26688899899899879999999

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=96.56  E-value=0.0015  Score=38.47  Aligned_cols=45  Identities=24%  Similarity=0.472  Sum_probs=38.9

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             899990058998999479999999966899489998899999999999996
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~  122 (218)
                      |+||..+      .|..|++++++|+.+++.|+.+|+..++--.+||.++.
T Consensus         2 i~ly~~~------~C~~~rka~~~L~~~~i~~~~~d~~~~p~s~~eL~~ll   46 (114)
T d1z3ea1           2 VTLYTSP------SCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQIL   46 (114)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHH
T ss_pred             EEEECCC------CCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf             7998699------98799999999998799849986102589989999998

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0032  Score=36.62  Aligned_cols=69  Identities=10%  Similarity=0.023  Sum_probs=54.9

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             8999900589989994799999999668994899988999--9999999999699862112899899897113045768
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d--~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      +.||...      .+++|++|+-+|+.+|++|+.+.|+..  .....++.+.. . ...+|.+..+|..+-....+.+.
T Consensus         3 m~LY~~~------~sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n-p-~g~vP~L~d~~~~l~ES~aI~~y   73 (79)
T d1ljra2           3 LELFLDL------VSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQIN-S-LGKLPTLKDGDFILTESSAILIY   73 (79)
T ss_dssp             CEEEECT------TSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTC-T-TCCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEEECC------CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHH-H-HCCEEEEEECCCEEECHHHHHHH
T ss_conf             9996089------9857999999999909998899600132236999999765-5-43125897399299768999999

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=96.41  E-value=0.0058  Score=35.07  Aligned_cols=69  Identities=13%  Similarity=0.108  Sum_probs=53.7

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             8999900589989994799999999668994899988999--9999999999699862112899899897113045768
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d--~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      +.||..+      .+++|++|+.+|..+++.|+.+.|+..  .....++.++. . ...+|.+..+|..|-....+.+.
T Consensus         1 mkLY~~~------~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n-P-~g~vP~L~d~~~~l~ES~aI~~y   71 (84)
T d1jlva2           1 MDFYYLP------GSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKIN-P-QHCIPTLVDNGFALWESRAICTY   71 (84)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHC-T-TCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEECCC------CCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHH-C-CCCCCEEEECCEEEECHHHHHHH
T ss_conf             9897389------9977999999999809998899966877764789999985-2-55688799899988859999999

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.36  E-value=0.0022  Score=37.56  Aligned_cols=69  Identities=10%  Similarity=-0.016  Sum_probs=53.6

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             8999900589989994799999999668994899988999--9999999999699862112899899897113045768
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d--~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      +.||...      .+++|++|+.+|+.+++.|+.+.|+..  ....+++.++. . ...+|.+..+|..|.....+.+.
T Consensus         2 ~kLY~~~------~s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~~~~~~~~~n-P-~g~vP~L~~~~~~l~ES~aI~~Y   72 (84)
T d1gnwa2           2 IKVFGHP------ASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRN-P-FGQVPAFEDGDLKLFESRAITQY   72 (84)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTC-T-TCCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEEECC------CCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHH-H-CCCCEEEEECCCEEECHHHHHHH
T ss_conf             6999679------9867999999999859996763256776510189999875-3-28621898899188168999999

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.15  E-value=0.0012  Score=39.22  Aligned_cols=46  Identities=17%  Similarity=0.234  Sum_probs=35.6

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf             2899990058998999479999999966899489998899999999999996
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLL  122 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~  122 (218)
                      .++||..+      .|.-|++++++|+.+++.|+.+|+..++--.++|.++.
T Consensus         1 t~~iY~~p------~Cs~srka~~~L~~~~i~~~~idy~k~pls~~eL~~ll   46 (114)
T d1rw1a_           1 TYVLYGIK------ACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWC   46 (114)
T ss_dssp             CEEEEECS------SCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHH
T ss_pred             CEEEEECC------CCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
T ss_conf             98999889------98689999999997699769997125699999999998

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.02  Score=31.92  Aligned_cols=70  Identities=10%  Similarity=-0.018  Sum_probs=53.2

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             289999005899899947999999996689948999889999999999999699862112899899897113045768
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      ++.||..+.      ...|+.+|.+|...+++|+++.++.......+.....  ....+|.+..+|..|.....+.+.
T Consensus         2 ~~~L~yf~~------~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~--p~g~vP~L~~~g~~i~eS~aI~~y   71 (77)
T d2a2ra2           2 PYTVVYFPV------RGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASC--LYGQLPKFQDGDLTLYQSNTILRH   71 (77)
T ss_dssp             SEEEEECSS------SGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHS--TTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CEEEEECCC------CHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCEEEECCEEEECHHHHHHH
T ss_conf             879997289------4558999999998699737999632003330012358--788888899799756369999999

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.73  E-value=0.0032  Score=36.60  Aligned_cols=61  Identities=18%  Similarity=0.369  Sum_probs=45.2

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCE--EEECC
Q ss_conf             28999900589989994799999999668------99489998899999999999996998621128998998--97113
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGR--YVGGV  142 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~------gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~--~IGG~  142 (218)
                      +|++|+++      +|+.|+++..+++..      .+.+..+|++.+.+    +.... + ..++|.++++|+  ++|..
T Consensus         4 ~v~~F~a~------wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~----l~~~~-~-V~~~Pt~~~~~~~~~~G~~   71 (85)
T d1nhoa_           4 NIEVFTSP------TCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE----KAIEY-G-LMAVPAIAINGVVRFVGAP   71 (85)
T ss_dssp             CEEEESCS------SSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG----GGGGT-C-SSCSSEEEETTTEEEECSS
T ss_pred             EEEEEECC------CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH----HHHHC-C-CEEECEEEECCCEEEECCC
T ss_conf             99999999------98326879999844032231001011334432643----68754-9-1582989999858998289


Q ss_pred             H
Q ss_conf             0
Q 027825          143 D  143 (218)
Q Consensus       143 d  143 (218)
                      +
T Consensus        72 ~   72 (85)
T d1nhoa_          72 S   72 (85)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Arsenate reductase ArsC
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.0056  Score=35.14  Aligned_cols=44  Identities=11%  Similarity=0.018  Sum_probs=35.3

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf             89999005899899947999999996689948999889999999999999
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDL  121 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~  121 (218)
                      |+||..+      .|..|+++.++|+..++.|+.+|+-.++--.++|..+
T Consensus         2 i~iY~~p------~Cs~srkal~~L~~~~i~~~~idy~k~pls~~eL~~l   45 (138)
T d1j9ba_           2 ITIYHNP------ACGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKL   45 (138)
T ss_dssp             CEEECCT------TCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHH
T ss_pred             EEEEECC------CCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH
T ss_conf             5999899------9988999999999779975998621579999999999

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.24  E-value=0.04  Score=30.10  Aligned_cols=56  Identities=14%  Similarity=0.227  Sum_probs=40.3

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE--EECCEEE
Q ss_conf             8999900589989994799999999668-----994899988999999999999969986211289--9899897
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV  139 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~-----gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI--FI~G~~I  139 (218)
                      |+.|+++      +|+.|+.+...|+..     ++.|..+|++.+++    +.+.. + ..++|.+  |-+|+.+
T Consensus        30 vv~F~a~------wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~-~-V~~~Pt~~~~~~G~~v   92 (113)
T d1r26a_          30 VAWFTAV------WCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSE----IVSKC-R-VLQLPTFIIARSGKML   92 (113)
T ss_dssp             EEEEECT------TCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHT-T-CCSSSEEEEEETTEEE
T ss_pred             EEEEECC------CCCCCHHHCEECCCCCCCCCCCCCCCCCCCCCHH----HHHHC-C-CCCCCEEEEEECCEEE
T ss_conf             9999889------8765300010001111111111110001233345----69975-2-1578789999899899

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.83  E-value=0.045  Score=29.78  Aligned_cols=57  Identities=16%  Similarity=0.262  Sum_probs=38.8

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHC----------CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEE--CCEE
Q ss_conf             28999900589989994799999999668----------99489998899999999999996998621128998--9989
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN----------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRY  138 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~----------gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI--~G~~  138 (218)
                      .|++|+++      +|++|+.+..++...          .|.+..+|+..+++    +.+.. + ..++|.+++  +|+.
T Consensus        18 ~i~~F~a~------wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~----l~~~~-~-V~~vPTi~i~~~G~~   85 (107)
T d1a8la2          18 RILVFVTP------TCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE----WADQY-N-VMAVPKIVIQVNGED   85 (107)
T ss_dssp             EEEEEECS------SCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH----HHHHT-T-CCSSCEEEEEETTEE
T ss_pred             EEEEEECC------CCCCCHHHCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC----CCCCC-C-CCCCEEEEEEECCEE
T ss_conf             99999958------664135648268764334331457839999851542212----21124-5-410008999969939


Q ss_pred             E
Q ss_conf             7
Q 027825          139 V  139 (218)
Q Consensus       139 I  139 (218)
                      +
T Consensus        86 ~   86 (107)
T d1a8la2          86 R   86 (107)
T ss_dssp             E
T ss_pred             E
T ss_conf             8

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.052  Score=29.42  Aligned_cols=68  Identities=10%  Similarity=0.121  Sum_probs=51.3

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             289999005899899947999999996689948999889999999999999699862112899899897113045768
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      ++.||+...      ...|+.+|.+|...||+|++++++.+.  ..+.++..  ....+|.+.+||..|.....+.+.
T Consensus         2 ~~kL~yf~~------~~~~~~vRl~L~~~gi~~e~~~~~~~~--~~~~~~~~--p~g~vP~L~~~g~~l~qS~AI~~y   69 (74)
T d2cvda2           2 NYKLTYFNM------RGRAEIIRYIFAYLDIQYEDHRIEQAD--WPEIKSTL--PFGKIPILEVDGLTLHQSLAIARY   69 (74)
T ss_dssp             CEEEEEESS------SGGGHHHHHHHHHTTCCCEEEEECGGG--HHHHHTTS--TTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CEEEEECCC------CHHHHHHHHHHHHCCCCCEECCCCCCC--CHHHCCCC--CCCCCCEEEECCEEEECHHHHHHH
T ss_conf             689997189------477999999999849997721110001--11220248--899868798899799869999999

>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=94.52  E-value=0.061  Score=28.98  Aligned_cols=71  Identities=18%  Similarity=0.043  Sum_probs=48.9

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             289999005899899947999999996689948999889999999999999699862112899899897113045768
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      |.+||+.+.      -..++.+|.+|...|++|+++.+........ ...........+|.+-.+|..|.....+.+.
T Consensus         1 KpkL~yf~~------~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~-~~~~~~~p~g~lPvL~~~g~~l~eS~AI~~y   71 (77)
T d1gula2           1 RPKLHYPNG------RGRMESVRWVLAAAGVEFDEEFLETKEQLYK-LQDGNHLLFQQVPMVEIDGMKLVQTRSILHY   71 (77)
T ss_dssp             CCEEEEESS------CTTTHHHHHHHHHTTCCCEEEEECSHHHHHH-HHHTTCSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CCEEEECCC------CCHHHHHHHHHHHCCCCCEEEEECCCCCCCH-HHHCCCCCCCCCCEEEECCEEEECHHHHHHH
T ss_conf             989998499------6158999999998399853786023000001-3332338888799888887753059999999

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=94.09  E-value=0.15  Score=26.62  Aligned_cols=74  Identities=19%  Similarity=0.293  Sum_probs=46.2

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE--EECCEEEECCH
Q ss_conf             8999900589989994799999999668------994899988999999999999969986211289--98998971130
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGGVD  143 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~------gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI--FI~G~~IGG~d  143 (218)
                      |+.|+++      +|+.|+.+...|+..      .+.|..+|++.+++    +.+.. + ...+|.+  |-+|+.+.-+.
T Consensus        28 vv~f~a~------wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~----l~~~~-~-v~~~Pt~~~~~~G~~v~~~~   95 (112)
T d1ep7a_          28 VVDFTAT------WCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAA----VAEAA-G-ITAMPTFHVYKDGVKADDLV   95 (112)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHH----HHHHH-T-CCBSSEEEEEETTEEEEEEE
T ss_pred             EEEEECC------CCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCC----CCCCC-C-CCCCCEEEEEECCEEEEEEE
T ss_conf             9999858------75787524222355541246268998730234442----10015-1-06789899999999999995


Q ss_pred             HHHHHHHHCCHHHHHHHH
Q ss_conf             457689709299997652
Q 027825          144 ELTELNESGKLGRMLRSA  161 (218)
Q Consensus       144 ei~~l~e~G~L~~lL~~~  161 (218)
                      -.    ...+|..+|+..
T Consensus        96 G~----~~~~l~~~i~k~  109 (112)
T d1ep7a_          96 GA----SQDKLKALVAKH  109 (112)
T ss_dssp             SC----CHHHHHHHHHHH
T ss_pred             CC----CHHHHHHHHHHH
T ss_conf             96----999999999987

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=94.05  E-value=0.11  Score=27.43  Aligned_cols=61  Identities=11%  Similarity=0.145  Sum_probs=41.6

Q ss_pred             CCE-EEEEEECCCCCCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEE--CCEEEE
Q ss_conf             828-999900589989994799999999668------99489998899999999999996998621128998--998971
Q 027825           70 DGV-VIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGRYVG  140 (218)
Q Consensus        70 ~kV-vIYttsl~giR~tc~~C~~vr~lL~~~------gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI--~G~~IG  140 (218)
                      ..| +.|+++      +|+.|+++...|+..      .+.+..+|++.+...    .+.. + ..++|.+++  +|+.+.
T Consensus        21 ~~vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l----~~~~-~-I~~~Pt~~~~~~g~~v~   88 (108)
T d1thxa_          21 QPVLVYFWAS------WCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTT----VKKY-K-VEGVPALRLVKGEQILD   88 (108)
T ss_dssp             SCEEEEEECT------TCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHH----HHHT-T-CCSSSEEEEEETTEEEE
T ss_pred             CCEEEEEECC------CCCCCCCCCHHHHHHHHHCCCCCEECEECCCCCHHH----HHHH-C-CCCCCEEEEEECCEEEE
T ss_conf             9399999879------988754100677899986178630000024530889----9985-0-26898799999999989


Q ss_pred             CC
Q ss_conf             13
Q 027825          141 GV  142 (218)
Q Consensus       141 G~  142 (218)
                      -+
T Consensus        89 ~~   90 (108)
T d1thxa_          89 ST   90 (108)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             99

>d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=93.96  E-value=0.075  Score=28.45  Aligned_cols=72  Identities=14%  Similarity=0.021  Sum_probs=49.9

Q ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             8289999005899899947999999996689948999889999999999999699862112899899897113045768
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        70 ~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      .|.+||+-+.+      ..++.+|.+|...||+|+++.+....... ............+|.+-+||..|.....+.+.
T Consensus         2 ~k~kL~Yf~~~------grae~irl~L~~~gv~yed~~~~~~~~~~-~~~~~~~~p~g~lPvl~~~g~~l~qS~AI~~Y   73 (79)
T d1k3ya2           2 EKPKLHYFNAR------GRMESTRWLLAAAGVEFEEKFIKSAEDLD-KLRNDGYLMFQQVPMVEIDGMKLVQTRAILNY   73 (79)
T ss_dssp             CCCEEEEESSS------TTTHHHHHHHHHHTCCCEEEEECSHHHHH-HHHHTTCCTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CCCEEEECCCC------HHHHHHHHHHHHCCCCCEEEEECCHHHHH-HHCCCCCCCCCCCCEEEECCEEEECHHHHHHH
T ss_conf             98699974995------78899999999849984688722312443-30213358878888899799489839999999

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.17  Score=26.37  Aligned_cols=81  Identities=15%  Similarity=0.210  Sum_probs=44.8

Q ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHH---CCCCEEEEECCC---CH-----------------------------
Q ss_conf             9982899990058998999479999999966---899489998899---99-----------------------------
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTFEV---NRVVTDERDVSL---HG-----------------------------  112 (218)
Q Consensus        68 ~~~kVvIYttsl~giR~tc~~C~~vr~lL~~---~gV~~eerDVs~---d~-----------------------------  112 (218)
                      ....|++|+-.      .||||+++...++.   .++.+..+..-.   ++                             
T Consensus        26 ak~tIv~FsD~------~CpyC~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   99 (156)
T d1eeja1          26 EKHVITVFTDI------TCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA   99 (156)
T ss_dssp             CCEEEEEEECT------TCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             CCEEEEEEECC------CCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             87799998589------987899887777876324762899961454310366899999998651455567887156433


Q ss_pred             --------HHHHHHHHHHCCCCCCCCEEEE-CCEEEECCHHHHHHHHHCCHHHHHHHHH
Q ss_conf             --------9999999996998621128998-9989711304576897092999976522
Q 027825          113 --------QFLNELKDLLGGETVTVPRVFI-KGRYVGGVDELTELNESGKLGRMLRSAR  162 (218)
Q Consensus       113 --------~~r~EL~~~~~g~~~tvPqIFI-~G~~IGG~dei~~l~e~G~L~~lL~~~~  162 (218)
                              ....++...+ | ....|.+|+ ||+.+-|+-...      .|.++|+...
T Consensus       100 ~~~~~~~i~~~~~la~~l-g-v~GTPt~~~~nG~~v~G~~~~e------~l~~~i~~~~  150 (156)
T d1eeja1         100 PASCDVDIADHYALGVQL-G-VSGTPAVVLSNGTLVPGYQPPK------EMKEFLDEHQ  150 (156)
T ss_dssp             CCCCSCCHHHHHHHHHHH-T-CCSSSEEECTTSCEEESCCCHH------HHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHC-C-CCCCCEEEEECCEEECCCCCHH------HHHHHHHHHH
T ss_conf             454301278999999984-9-8688879971995825989999------9999999999

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=93.67  E-value=0.028  Score=31.03  Aligned_cols=72  Identities=14%  Similarity=0.038  Sum_probs=49.8

Q ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             8289999005899899947999999996689948999889999999999999699862112899899897113045768
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        70 ~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      .|.+||+-+.      -..|+.+|.+|...||+|+++.++....... ...........+|.+.+||..|.....+.+.
T Consensus         2 ~K~kL~yf~~------~~~~~~vR~~L~~~gi~ye~~~~~~~~~~~~-~~~~~~~p~g~lPvL~~~g~~l~eS~AI~rY   73 (78)
T d1b48a2           2 AKPKLYYFNG------RGRMESIRWLLAAAGVEFEEEFLETREQYEK-MQKDGHLLFGQVPLVEIDGMMLTQTRAILSY   73 (78)
T ss_dssp             CCCEEEBCSS------CTTTHHHHHHHHHHTCCCCCCBCCCHHHHHH-HHTTTCSSSSCSCEEEETTEEECCHHHHHHH
T ss_pred             CCCEEEECCC------CHHHHHHHHHHHHCCCCCEEEEECCHHHHCC-HHHCCCCCCCCCCEEEECCEEEECHHHHHHH
T ss_conf             9848997499------6679999999998499727999744010001-0102114489778888699289878999999

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=93.58  E-value=0.031  Score=30.78  Aligned_cols=49  Identities=31%  Similarity=0.722  Sum_probs=36.2

Q ss_pred             CCCCCCCCCCC------EEECCCCCCCCEEEECCCC---EECCCCCCCCCCC---CCCCCC
Q ss_conf             76788889844------4658999997134532895---0006876868710---389889
Q 027825          169 RQACEGCGGAR------FVPCFDCGGSCKVVLANGD---KQRCGVCNENGLV---HCPACS  217 (218)
Q Consensus       169 ~~~C~~Cgg~r------fv~C~~C~Gs~k~~~~~~~---~~rC~~CnenGl~---~C~~C~  217 (218)
                      ...|..|.|.+      ...|+.|+|+-++....+.   ...|+.||=.|.+   +|+.|.
T Consensus        11 ~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~   71 (79)
T d1exka_          11 LEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCH   71 (79)
T ss_dssp             EEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGT
T ss_pred             ECCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCCEEEEECCCCCCCEEECCCCCCCCC
T ss_conf             0447999575668983160189734614998843641003887506731268899799999

>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.29  E-value=0.23  Score=25.53  Aligned_cols=74  Identities=14%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHH---HHHHHHCCCCCCCCEEEECCEEEECCHHH
Q ss_conf             982899990058998999479999999966899489998899999999---99999699862112899899897113045
Q 027825           69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLN---ELKDLLGGETVTVPRVFIKGRYVGGVDEL  145 (218)
Q Consensus        69 ~~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~---EL~~~~~g~~~tvPqIFI~G~~IGG~dei  145 (218)
                      ..++++|+.+.      -..++.+|-+|...+++|+++.++.+.....   .+..........+|.+-.+|..+.....+
T Consensus         2 ~~~i~L~Y~~~------~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~~g~~l~eS~AI   75 (85)
T d1okta2           2 GDNIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAI   75 (85)
T ss_dssp             CCCEEEEEESS------STTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHH
T ss_pred             CCCEEEEECCC------CHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCCEEECHHHH
T ss_conf             99739998699------526699999999839985378972342100223333211124478878520689878309999


Q ss_pred             HHH
Q ss_conf             768
Q 027825          146 TEL  148 (218)
Q Consensus       146 ~~l  148 (218)
                      ...
T Consensus        76 ~~y   78 (85)
T d1okta2          76 VRY   78 (85)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999

>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=93.28  E-value=0.15  Score=26.59  Aligned_cols=68  Identities=13%  Similarity=0.089  Sum_probs=52.1

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             289999005899899947999999996689948999889999999999999699862112899899897113045768
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      +..||..++      -..++.+|.+|...|+.|+++.+..+.  ..+++... . ...+|.+.+||..|.....+.+.
T Consensus         2 ~~~L~yf~~------~g~~~~iRl~L~~~gi~ye~~~~~~~~--~~~~~~~~-p-~g~lPvL~~~g~~i~eS~aI~~y   69 (75)
T d2gsqa2           2 KYTLHYFPL------MGRAELCRFVLAAHGEEFTDRVVEMAD--WPNLKATM-Y-SNAMPVLDIDGTKMSQSMCIARH   69 (75)
T ss_dssp             CEEEEECSS------SGGGHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGS-G-GGSSCEEEETTEEECCHHHHHHH
T ss_pred             CEEEEECCC------CHHHHHHHHHHHHCCCCCHHHCCCCCC--CHHHHHCC-C-CCCCCEEEECCEEEECHHHHHHH
T ss_conf             779996699------436899999999859981021033212--24442023-3-68867798798011069999999

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.22  Score=25.63  Aligned_cols=60  Identities=23%  Similarity=0.323  Sum_probs=41.2

Q ss_pred             CCEEE-EEEECCCCCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE--EECCEEEEC
Q ss_conf             82899-9900589989994799999999668-----994899988999999999999969986211289--989989711
Q 027825           70 DGVVI-YTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGG  141 (218)
Q Consensus        70 ~kVvI-Yttsl~giR~tc~~C~~vr~lL~~~-----gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI--FI~G~~IGG  141 (218)
                      ..|+| |+++      +|+.|+.+...|...     ++.+..+|++.+.+.    .... + ..++|.+  |-+|+.++-
T Consensus        21 k~vvv~F~a~------wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~----~~~~-~-V~~~Pt~~~~~~G~~v~~   88 (105)
T d2ifqa1          21 KLVVVDFSAT------WCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDV----ASEC-E-VKCMPTFQFFKKGQKVGE   88 (105)
T ss_dssp             SCEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHH----HHHT-T-CCBSSEEEEEETTEEEEE
T ss_pred             CEEEEEEECC------CCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCHHH----HHHC-C-CEEEEEEEEEECCEEEEE
T ss_conf             9899999858------75640344444322011011100465144258768----9881-9-559999999999999889

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.97  E-value=0.26  Score=25.24  Aligned_cols=60  Identities=18%  Similarity=0.176  Sum_probs=41.1

Q ss_pred             CEEE-EEEECCCCCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE--EECCEEEECC
Q ss_conf             2899-9900589989994799999999668-----994899988999999999999969986211289--9899897113
Q 027825           71 GVVI-YTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGGV  142 (218)
Q Consensus        71 kVvI-Yttsl~giR~tc~~C~~vr~lL~~~-----gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI--FI~G~~IGG~  142 (218)
                      .|+| |+++      +|+.|+++...|+..     ++.|..+|++.+++.    .+.. + ...+|.+  |-+|+.++..
T Consensus        23 lvvv~F~a~------wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l----~~~~-~-v~~~Pt~~~~~~G~~v~~~   90 (107)
T d1gh2a_          23 LAVVKFTMR------GCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGT----AATN-N-ISATPTFQFFRNKVRIDQY   90 (107)
T ss_dssp             CEEEEEECS------SCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHH----HHHT-T-CCSSSEEEEEETTEEEEEE
T ss_pred             EEEEEEECC------CCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHH----HHHC-C-CEECEEEEEEECCEEEEEE
T ss_conf             799999889------87786431332200123221002223444324334----6652-8-1443289999999899999

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.86  E-value=0.037  Score=30.31  Aligned_cols=48  Identities=27%  Similarity=0.709  Sum_probs=34.2

Q ss_pred             CCCCCCCCCCE-----EECCCCCCCCEEEEC--CC-----CEECCCCCCCCCCC-----CCCCCC
Q ss_conf             67888898444-----658999997134532--89-----50006876868710-----389889
Q 027825          170 QACEGCGGARF-----VPCFDCGGSCKVVLA--NG-----DKQRCGVCNENGLV-----HCPACS  217 (218)
Q Consensus       170 ~~C~~Cgg~rf-----v~C~~C~Gs~k~~~~--~~-----~~~rC~~CnenGl~-----~C~~C~  217 (218)
                      ..|..|.|.+.     -.|+.|+|+-+++..  .+     ....|+.|+=.|.+     +|+.|.
T Consensus         3 v~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~   67 (74)
T d1nlta3           3 ILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCN   67 (74)
T ss_dssp             EECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSST
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCCCCEEEECCCCCCCCCC
T ss_conf             19949826335999888898874520566888805757988888865745367818999799998

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.73  E-value=0.26  Score=25.23  Aligned_cols=73  Identities=15%  Similarity=0.269  Sum_probs=46.3

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE--EECCEEEECCHH
Q ss_conf             8999900589989994799999999668-----994899988999999999999969986211289--989989711304
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGGVDE  144 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~-----gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI--FI~G~~IGG~de  144 (218)
                      |+.|+++      +|+.|+.+...|+..     ++.+..+|++.+.+    +.+.. + ...+|.+  |.+|+.+.-+.-
T Consensus        22 vv~F~a~------wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~----~~~~~-~-V~~~Pt~i~~k~G~~v~~~~G   89 (103)
T d1syra_          22 IVDFFAE------WCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE----VTEKE-N-ITSMPTFKVYKNGSSVDTLLG   89 (103)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHH----HHHHT-T-CCSSSEEEEEETTEEEEEEES
T ss_pred             EEEEECC------CCCCCCCCCCCCHHHHHCCCCEEEEEECCCCCCC----EEEEE-E-EECCEEEEEEECCEEEEEEEC
T ss_conf             9999678------6047511130000112203204888611246753----00022-3-505608999999999999949


Q ss_pred             HHHHHHHCCHHHHHHH
Q ss_conf             5768970929999765
Q 027825          145 LTELNESGKLGRMLRS  160 (218)
Q Consensus       145 i~~l~e~G~L~~lL~~  160 (218)
                      ..    ..+|.++++.
T Consensus        90 ~~----~~~l~~~i~k  101 (103)
T d1syra_          90 AN----DSALKQLIEK  101 (103)
T ss_dssp             CC----HHHHHHHHHT
T ss_pred             CC----HHHHHHHHHH
T ss_conf             69----8999999996

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.66  E-value=0.29  Score=24.99  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=39.8

Q ss_pred             CEEE-EEEECCCCCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE--EECCEEEE
Q ss_conf             2899-9900589989994799999999668-----994899988999999999999969986211289--98998971
Q 027825           71 GVVI-YTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG  140 (218)
Q Consensus        71 kVvI-Yttsl~giR~tc~~C~~vr~lL~~~-----gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI--FI~G~~IG  140 (218)
                      .|+| |+++      +|+.|+.+...|+..     ++.|..+|++.+.+..    +.. + ...+|.+  |-+|+.+.
T Consensus        30 ~vlv~F~a~------wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~----~~~-~-V~~~Pt~~~~~~G~~v~   95 (114)
T d1xfla_          30 LVVVDFTAS------WCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVA----SDW-A-IQAMPTFMFLKEGKILD   95 (114)
T ss_dssp             EEEEEEECT------TCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHH----HHT-T-CCSSSEEEEEETTEEEE
T ss_pred             EEEEEEECC------CCCCCCCCCCCHHHHCCCCCCCCEEEEEEEECEEEC----CCC-C-EEEEEEEEEEECCEEEE
T ss_conf             699999868------878864333000110134566520478741010010----005-5-41157999998999999

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.49  E-value=0.13  Score=27.00  Aligned_cols=55  Identities=15%  Similarity=0.355  Sum_probs=40.9

Q ss_pred             CEEEEEEECCCCCCCCHHHHH----HHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEE
Q ss_conf             289999005899899947999----999996689948999889999999999999699862112899899897
Q 027825           71 GVVIYTTSLRGVRRTYEDCNR----VRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYV  139 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~----vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~I  139 (218)
                      +|.+|++       +|+.|.+    ++..+...|+..+..+|..    ..++.++  | ..++|.+.|||+.+
T Consensus         3 ~IkVlg~-------gC~~C~~~~~~v~~a~~e~gi~a~v~kv~d----~~ei~~y--g-VmstPalvIdg~vv   61 (77)
T d1iloa_           3 KIQIYGT-------GCANCQMLEKNAREAVKELGIDAEFEKIKE----MDQILEA--G-LTALPGLAVDGELK   61 (77)
T ss_dssp             EEEEECS-------SSSTTHHHHHHHHHHHHHTTCCEEEEEECS----HHHHHHH--T-CSSSSCEEETTEEE
T ss_pred             EEEEECC-------CCCCHHHHHHHHHHHHHHCCCCEEEEEECC----HHHHHHC--C-CCCCCEEEECCEEE
T ss_conf             7999689-------995378999999999997599559998079----9999875--9-76788799999999

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.43  E-value=0.22  Score=25.73  Aligned_cols=71  Identities=15%  Similarity=0.263  Sum_probs=39.9

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHC---CCCEEEEE--CC-CCHH-----------------------------
Q ss_conf             9828999900589989994799999999668---99489998--89-9999-----------------------------
Q 027825           69 SDGVVIYTTSLRGVRRTYEDCNRVRSTFEVN---RVVTDERD--VS-LHGQ-----------------------------  113 (218)
Q Consensus        69 ~~kVvIYttsl~giR~tc~~C~~vr~lL~~~---gV~~eerD--Vs-~d~~-----------------------------  113 (218)
                      ...|++|+-.      .||||+++...++.+   ++.+..+.  +. .++.                             
T Consensus        27 k~~I~~FsD~------~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~  100 (150)
T d1t3ba1          27 KHVVTVFMDI------TCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE  100 (150)
T ss_dssp             SEEEEEEECT------TCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred             CEEEEEEECC------CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             8899999789------9878998867788773368559999841565334678999999975658876676764203211


Q ss_pred             ------H--HHHHHHHHCCCCCCCCEEEE-CCEEEECCHHHHH
Q ss_conf             ------9--99999996998621128998-9989711304576
Q 027825          114 ------F--LNELKDLLGGETVTVPRVFI-KGRYVGGVDELTE  147 (218)
Q Consensus       114 ------~--r~EL~~~~~g~~~tvPqIFI-~G~~IGG~dei~~  147 (218)
                            .  -.++.+.+ | ....|.+|+ ||+.|-|+-...+
T Consensus       101 ~~~~~~i~~~~~la~~l-G-v~GTPt~~~~nG~~i~G~~~~~~  141 (150)
T d1t3ba1         101 VKTPNIVKKHYELGIQF-G-VRGTPSIVTSTGELIGGYLKPAD  141 (150)
T ss_dssp             CCCSSHHHHHHHHHHHH-T-CCSSCEEECTTSCCCCSCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHC-C-CCCCCEEEECCCCEECCCCCHHH
T ss_conf             22315899999999863-8-67787799759828669899999

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.04  E-value=0.012  Score=33.21  Aligned_cols=60  Identities=20%  Similarity=0.378  Sum_probs=39.3

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHH----CC--CCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECC--EEEECC
Q ss_conf             2899990058998999479999999966----89--948999889999999999999699862112899899--897113
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV----NR--VVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKG--RYVGGV  142 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~----~g--V~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G--~~IGG~  142 (218)
                      .|++|+++|      |+.|+.+...++.    ++  +.+..+|.+.+.+    +.+.. + ..++|.+++++  +++|..
T Consensus         5 ~v~~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~----la~~~-~-V~~~Pt~~i~~~g~~~G~~   72 (85)
T d1fo5a_           5 KIELFTSPM------CPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ----KAMEY-G-IMAVPTIVINGDVEFIGAP   72 (85)
T ss_dssp             EEEEEECCC------SSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC----TTTST-T-TCCSSEEEETTEEECCSSS
T ss_pred             EEEEEECCC------CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC----CCCCC-C-CEEEEEEEEECCCEEECCC
T ss_conf             999998799------8172766442212221110000111101100113----33368-7-1485099997791998789

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.04  E-value=0.075  Score=28.46  Aligned_cols=58  Identities=14%  Similarity=0.130  Sum_probs=41.8

Q ss_pred             CEEE-EEEECCCCCCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE--EECCEEEE
Q ss_conf             2899-9900589989994799999999668------994899988999999999999969986211289--98998971
Q 027825           71 GVVI-YTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVG  140 (218)
Q Consensus        71 kVvI-Yttsl~giR~tc~~C~~vr~lL~~~------gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI--FI~G~~IG  140 (218)
                      .|+| |+++      +|+.|+++..+|+..      .+.|..+|++.+++    +.+.. + ..++|.+  |.+|++|.
T Consensus        24 ~vvv~F~a~------wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~----la~~~-~-I~~~PT~~~f~~g~~i~   90 (137)
T d1qgva_          24 VVVIRFGHD------WDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD----FNKMY-E-LYDPCTVMFFFRNKHIM   90 (137)
T ss_dssp             EEEEEEECT------TSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTSS-C-SCSSCEEEEEETTEEEE
T ss_pred             EEEEEEECC------CCCCCHHCCHHHHHHHHHHHCCCEEEEEECCCCCH----HHHHC-C-EEEEEEEEEEECCCEEE
T ss_conf             899999799------77552010848999998750100578864333510----04345-7-42578999996895899

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.97  E-value=0.45  Score=23.86  Aligned_cols=62  Identities=15%  Similarity=0.121  Sum_probs=38.3

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHH----CCCCEEEEECCC--CHHHHHHHHHHHCCCCCCCCEEEE--CCEEEE
Q ss_conf             2899990058998999479999999966----899489998899--999999999996998621128998--998971
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEV----NRVVTDERDVSL--HGQFLNELKDLLGGETVTVPRVFI--KGRYVG  140 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~----~gV~~eerDVs~--d~~~r~EL~~~~~g~~~tvPqIFI--~G~~IG  140 (218)
                      -++.|+++      +|++|++....|..    ++..+..+|+..  +......+.... + ..++|.+++  +|+.+.
T Consensus        29 ~~v~f~~~------~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~-V~~~PTli~~~~gk~~~   98 (115)
T d1zmaa1          29 ATFFIGRK------TCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRY-G-IPTVPGFVHITDGQINV   98 (115)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHH-T-CCSSCEEEEEETTEEEE
T ss_pred             EEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC-C-CCCCCEEEEEECCEEEE
T ss_conf             99999299------98327879999899999854323221010002320023211001-2-25652799998998999

>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

Probab=90.83  E-value=0.15  Score=26.74  Aligned_cols=70  Identities=11%  Similarity=-0.030  Sum_probs=45.4

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC--HHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHH
Q ss_conf             28999900589989994799999999668994899988999--999999999969986211289989989711304576
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLH--GQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTE  147 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d--~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~  147 (218)
                      ++.||+.+.+      ..++.+|.+|...+++|+++.++.+  +++.++..... .....+|.+-.+|..|.....+.+
T Consensus         1 p~~L~Y~~~r------grae~iRl~L~~~gv~ye~~~~~~~~~~~~~~~~~~~~-~p~~~~P~l~~~g~~l~qS~AI~~   72 (80)
T d1fhea2           1 PAKLGYWKLR------GLAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMG-LDLPNLPYYIDDKCKLTQSVAIMR   72 (80)
T ss_dssp             CCEEEEESSC------TTTHHHHHHHHHTTCCCEEEEECSTTSHHHHTTTTTSC-CSSCCSSEEECSSCEEESTTHHHH
T ss_pred             CEEEEECCCC------HHHHHHHHHHHHCCCCCEEEEECCCCCHHCCHHHHHCC-CCCCCEEEEECCCEEEECHHHHHH
T ss_conf             9399983996------07799999999849997899966663101014454045-998650144318847757899999

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=90.31  E-value=0.51  Score=23.50  Aligned_cols=59  Identities=8%  Similarity=0.180  Sum_probs=39.4

Q ss_pred             CCEEE-EEEECCCCCCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEE--ECCEEEE
Q ss_conf             82899-9900589989994799999999668------9948999889999999999999699862112899--8998971
Q 027825           70 DGVVI-YTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRYVG  140 (218)
Q Consensus        70 ~kVvI-Yttsl~giR~tc~~C~~vr~lL~~~------gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIF--I~G~~IG  140 (218)
                      ..|+| |+++      +|+.|.++...+...      .+.+..+|++.+..    +.+.. + ...+|.++  .+|+.++
T Consensus        20 kpvlv~F~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~-~-V~~~Pt~~~~~~G~~v~   87 (107)
T d1dbya_          20 VPVLVDFWAP------WCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN----VASEY-G-IRSIPTIMVFKGGKKCE   87 (107)
T ss_dssp             SCEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHH-T-CCSSCEEEEESSSSEEE
T ss_pred             CCEEEEEECC------CCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHH-C-CCCEEEEEEEECCEEEE
T ss_conf             9199999899------87775446718888877643440699996666566----79881-3-46267999998780888

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.30  E-value=0.52  Score=23.49  Aligned_cols=72  Identities=14%  Similarity=0.188  Sum_probs=44.2

Q ss_pred             CCEEEEEEECC--CCCCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHH---HHHHHHCCCCCCCCEEEE--CC
Q ss_conf             82899990058--9989994799999999668------99489998899999999---999996998621128998--99
Q 027825           70 DGVVIYTTSLR--GVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLN---ELKDLLGGETVTVPRVFI--KG  136 (218)
Q Consensus        70 ~kVvIYttsl~--giR~tc~~C~~vr~lL~~~------gV~~eerDVs~d~~~r~---EL~~~~~g~~~tvPqIFI--~G  136 (218)
                      ..|+||+++..  .-+.+|+.|+++.-.++..      ++.|..+||...+++.+   .+.... + ...+|.+.+  +|
T Consensus        22 k~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~-~-V~~iPT~i~~~~g   99 (119)
T d1woua_          22 KTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNL-K-VTAVPTLLKYGTP   99 (119)
T ss_dssp             SEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHH-C-CCSSSEEEETTSS
T ss_pred             CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHC-C-EEEEEEEEEEECC
T ss_conf             7799999802787789987539999999999997547861999998878721004544578867-8-5888899999899


Q ss_pred             EEEECCH
Q ss_conf             8971130
Q 027825          137 RYVGGVD  143 (218)
Q Consensus       137 ~~IGG~d  143 (218)
                      +.+.+.+
T Consensus       100 ~~l~~~~  106 (119)
T d1woua_         100 QKLVESE  106 (119)
T ss_dssp             CEEEGGG
T ss_pred             EEEEEEE
T ss_conf             6972004

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=89.69  E-value=0.58  Score=23.20  Aligned_cols=72  Identities=19%  Similarity=0.270  Sum_probs=45.7

Q ss_pred             CEEE-EEEECCCCCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE--EECCEEE---
Q ss_conf             2899-9900589989994799999999668-----994899988999999999999969986211289--9899897---
Q 027825           71 GVVI-YTTSLRGVRRTYEDCNRVRSTFEVN-----RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV---  139 (218)
Q Consensus        71 kVvI-Yttsl~giR~tc~~C~~vr~lL~~~-----gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI--FI~G~~I---  139 (218)
                      .|+| |+++      +|+.|+.+...|+..     ++.+..+|++.+....    ... + ...+|.+  |-+|+.+   
T Consensus        28 ~vvv~F~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~----~~~-~-I~~~Pt~~~~k~G~~v~~~   95 (113)
T d1ti3a_          28 LIVVDFTAS------WCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVA----EEW-N-VEAMPTFIFLKDGKLVDKT   95 (113)
T ss_dssp             EEEEEEECS------SCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHH----HHH-H-CSSTTEEEEEETTEEEEEE
T ss_pred             EEEEEEECC------CCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC----CCC-E-ECCCCEEEEEECCEEEEEE
T ss_conf             799999848------646622332455432003798438765420256532----267-2-3243659999999999998


Q ss_pred             ECCHHHHHHHHHCCHHHHHHHH
Q ss_conf             1130457689709299997652
Q 027825          140 GGVDELTELNESGKLGRMLRSA  161 (218)
Q Consensus       140 GG~dei~~l~e~G~L~~lL~~~  161 (218)
                      .|.+.       .+|..+|...
T Consensus        96 ~G~~~-------~~l~~~i~k~  110 (113)
T d1ti3a_          96 VGADK-------DGLPTLVAKH  110 (113)
T ss_dssp             ECCCT-------THHHHHHHHH
T ss_pred             CCCCH-------HHHHHHHHHH
T ss_conf             59799-------9999999987

>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.18  E-value=0.6  Score=23.08  Aligned_cols=69  Identities=12%  Similarity=0.152  Sum_probs=50.9

Q ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             8289999005899899947999999996689948999889999999999999699862112899899897113045768
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        70 ~kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      +...||+-+.      -..++.+|.+|...+++|+++.++.+.  ..+.+...  ....+|.+.++|..|.....+.+.
T Consensus         2 ~s~kL~Yf~~------~g~~e~iRl~L~~~gi~yed~~~~~~~--~~~~~~~~--p~g~lP~l~~~g~~l~qS~aI~~Y   70 (76)
T d1m0ua2           2 HSYTLFYFNV------KALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTM--PMGQMPVLEVDGKRVHQSISMARF   70 (76)
T ss_dssp             CCEEEEEESS------SGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGS--GGGCSCEEEETTEEEECHHHHHHH
T ss_pred             CCEEEEECCC------CHHHHHHHHHHHHCCCCCEEECCCHHH--HHHHHCCC--CCCCCCEEEECCCCCCCHHHHHHH
T ss_conf             5379996698------568999999999759997882489555--22320258--678876798898020059999999

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=88.28  E-value=0.73  Score=22.60  Aligned_cols=59  Identities=17%  Similarity=0.265  Sum_probs=41.4

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE--EECCEEEEC
Q ss_conf             28999900589989994799999999668------994899988999999999999969986211289--989989711
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYVGG  141 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~------gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI--FI~G~~IGG  141 (218)
                      -|+.|+++      +|+.|+.+...++..      .+.+..+|++.+...    .... + ...+|.+  |-+|+.+.-
T Consensus        20 vvv~F~a~------wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~-~-V~~~Pt~~~~~~G~~~~~   86 (105)
T d1nw2a_          20 VLVDFWAA------WCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET----TSQF-G-IMSIPTLILFKGGEPVKQ   86 (105)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHH----HHHT-T-CCBSSEEEEEETTEEEEE
T ss_pred             EEEEEECC------CCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCC----HHHC-C-CCEEEEEEEEECCEEEEE
T ss_conf             99999778------988853114000100342389269999979887154----8887-9-643107999989989889

>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.87  E-value=0.69  Score=22.74  Aligned_cols=70  Identities=7%  Similarity=0.007  Sum_probs=48.2

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHH---HHHH-----HHHHCCCCCCCCEEEECCEEEECC
Q ss_conf             28999900589989994799999999668994899988999999---9999-----999699862112899899897113
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQF---LNEL-----KDLLGGETVTVPRVFIKGRYVGGV  142 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~---r~EL-----~~~~~g~~~tvPqIFI~G~~IGG~  142 (218)
                      +++||+.+.      -..++.+|.+|...+++|+.+.++.+...   ..+.     +..  .....+|.+-.+|..|...
T Consensus         1 P~~L~Y~~~------~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~lP~L~~~g~~l~eS   72 (84)
T d2c4ja2           1 PMTLGYWNI------RGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLG--LDFPNLPYLIDGTHKITQS   72 (84)
T ss_dssp             CEEEEEESS------SGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSC--CSSCCSSEEEETTEEEESH
T ss_pred             CEEEEECCC------CHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCC--CCCCCCCEEEECCEEEECH
T ss_conf             979998798------35549999999983998558997354222345677766653046--9899999888799788559


Q ss_pred             HHHHHH
Q ss_conf             045768
Q 027825          143 DELTEL  148 (218)
Q Consensus       143 dei~~l  148 (218)
                      ..+.+.
T Consensus        73 ~AIl~Y   78 (84)
T d2c4ja2          73 NAILRY   78 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=87.06  E-value=0.38  Score=24.29  Aligned_cols=67  Identities=6%  Similarity=0.025  Sum_probs=49.4

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             89999005899899947999999996689948999889999999999999699862112899899897113045768
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      ..||+.+.      ...++.+|-+|...+++|+++.+....  ..+++... . ...+|.+.++|..|.....+.+.
T Consensus         3 ~kL~Yf~~------~g~~e~iRl~L~~~gi~~e~~~~~~~~--~~~~~~~~-p-~g~lPvL~~~~~~l~qS~AI~~Y   69 (77)
T d1tu7a2           3 YKLTYFSI------RGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQF-Q-FGQLPCLYDGDQQIVQSGAILRH   69 (77)
T ss_dssp             EEEEEESS------SGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGS-T-TSCSCEEEETTEEEESHHHHHHH
T ss_pred             EEEEECCC------CHHHHHHHHHHHHCCCCCEEEECCCCC--CHHHCCCC-C-CCCCCEEEECCEEEECHHHHHHH
T ss_conf             69996088------387899999999839983265145322--32210368-8-88998999888789759999999

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=86.84  E-value=0.27  Score=25.15  Aligned_cols=40  Identities=30%  Similarity=0.720  Sum_probs=31.9

Q ss_pred             CCCCCCCCCCCCEE-----------ECCCCCCCCEEEECCCCEECCCCCCCCCCCC
Q ss_conf             77678888984446-----------5899999713453289500068768687103
Q 027825          168 GRQACEGCGGARFV-----------PCFDCGGSCKVVLANGDKQRCGVCNENGLVH  212 (218)
Q Consensus       168 ~~~~C~~Cgg~rfv-----------~C~~C~Gs~k~~~~~~~~~rC~~CnenGl~~  212 (218)
                      ....|..|.|.+.+           +|+.|+|+=+++.     -+|+.|+=+|.|+
T Consensus        27 ~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~-----~~C~~C~G~G~v~   77 (79)
T d1exka_          27 QPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIK-----DPCNKCHGHGRVE   77 (79)
T ss_dssp             CCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECS-----SBCGGGTTSSEEE
T ss_pred             CCEECCCCCCEEEEEEECCCCEEEEECCCCCCCEEECC-----CCCCCCCCCEEEE
T ss_conf             16018973461499884364100388750673126889-----9799999843860

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.06  E-value=0.42  Score=24.04  Aligned_cols=84  Identities=8%  Similarity=0.028  Sum_probs=44.8

Q ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHH----------HHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE-EEC--
Q ss_conf             98289999005899899947999999----------99668994899988999999999999969986211289-989--
Q 027825           69 SDGVVIYTTSLRGVRRTYEDCNRVRS----------TFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRV-FIK--  135 (218)
Q Consensus        69 ~~kVvIYttsl~giR~tc~~C~~vr~----------lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI-FI~--  135 (218)
                      ...|+||..+-     +|++|+...+          +++.+=| +..+|++.  .--..+.+.. + ...+|.+ ||+  
T Consensus        42 ~K~llV~~~~~-----~C~~C~~m~~~v~~d~~V~~~l~~~fV-~~~v~~~~--~e~~~~~~~y-~-v~~~Pti~~idp~  111 (147)
T d2dlxa1          42 NKWLMINIQNV-----QDFACQCLNRDVWSNEAVKNIIREHFI-FWQVYHDS--EEGQRYIQFY-K-LGDFPYVSILDPR  111 (147)
T ss_dssp             TCEEEEEEECS-----CTTTHHHHHHHTTTCHHHHHHHHHTEE-EEEEESSS--HHHHHHHHHH-T-CCSSSEEEEECTT
T ss_pred             CCCEEEEEECC-----CCCCHHHHHHHCCCCHHHHHHHHHHEE-EEEECCCC--HHHHHHHHHE-E-CCCEEEEEEEECC
T ss_conf             99389999517-----887269998752378999999752456-76511110--1356565500-0-3761489998089


Q ss_pred             -CEE---EECCHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf             -989---711304576897092999976522312
Q 027825          136 -GRY---VGGVDELTELNESGKLGRMLRSARVEM  165 (218)
Q Consensus       136 -G~~---IGG~dei~~l~e~G~L~~lL~~~~~~~  165 (218)
                       |+.   +|+.+ ..++.  ..|.++|...+...
T Consensus       112 ~ge~v~~~~~~~-~~~fl--~~L~~fl~~~~~~~  142 (147)
T d2dlxa1         112 TGQKLVEWHQLD-VSSFL--DQVTGFLGEHGQLD  142 (147)
T ss_dssp             TCCCCEEESSCC-HHHHH--HHHHHHHHHTCSCS
T ss_pred             CCEEECCCCCCC-HHHHH--HHHHHHHHHCCCCC
T ss_conf             985750248889-99999--99999996079986

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=85.41  E-value=1.1  Score=21.66  Aligned_cols=62  Identities=24%  Similarity=0.291  Sum_probs=40.3

Q ss_pred             CCCCEEE-EEEECCCCCCCCHHHHHHHHHHHH-----CCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEE--ECCEEE
Q ss_conf             9982899-990058998999479999999966-----89948999889999999999999699862112899--899897
Q 027825           68 GSDGVVI-YTTSLRGVRRTYEDCNRVRSTFEV-----NRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRYV  139 (218)
Q Consensus        68 ~~~kVvI-Yttsl~giR~tc~~C~~vr~lL~~-----~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIF--I~G~~I  139 (218)
                      +...|+| |+++      +|+.|+.+...|+.     .++.+..+|++.+   ..+|.+.. + ..++|.+.  -+|+.+
T Consensus        24 ~~k~vvv~f~a~------wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~---~~~l~~~~-~-V~~~Pt~~~~k~G~~v   92 (112)
T d1f9ma_          24 GDKPVVLDMFTQ------WCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQE---NKTLAKEL-G-IRVVPTFKILKENSVV   92 (112)
T ss_dssp             TTSCEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEECSST---THHHHHHH-C-CSSSSEEEEEETTEEE
T ss_pred             CCCEEEEEEECC------CCCCHHHHHHHHHHHCCCCCCCEEECCCCCCC---CHHHHHHE-E-ECCCCEEEEEECCEEE
T ss_conf             999799999769------99636899877755213333210000223432---46567543-4-0568789999999999


Q ss_pred             E
Q ss_conf             1
Q 027825          140 G  140 (218)
Q Consensus       140 G  140 (218)
                      .
T Consensus        93 ~   93 (112)
T d1f9ma_          93 G   93 (112)
T ss_dssp             E
T ss_pred             E
T ss_conf             9

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=85.40  E-value=1.1  Score=21.66  Aligned_cols=67  Identities=10%  Similarity=0.082  Sum_probs=47.7

Q ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             89999005899899947999999996689948999889999999999999699862112899899897113045768
Q 027825           72 VVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        72 VvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      ..|+..+.      -..++.+|.+|...+++|+++.+..+  ...+.+... . ...+|.+.+||..|.....+.+.
T Consensus         4 ~kL~Yf~~------~gr~e~vR~~L~~~gi~ye~~~~~~~--~~~~~~~~~-p-~g~lPvL~~~g~~i~qS~AI~~y   70 (77)
T d1tw9a2           4 YKLTYFNG------RGAGECARQVFALADQKYEDVRLTQE--TFVPLKATF-P-FGQVPVLEVDGQQLAQSQAICRY   70 (77)
T ss_dssp             EEEEEESS------SGGGHHHHHHHHHTTCCCEEEEECHH--HHGGGGGGS-T-TSCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEEECCC------CHHHHHHHHHHHHCCCCCEEEECCCC--CCHHHHHHC-C-CCCCCEEEECCEEEECHHHHHHH
T ss_conf             68997898------46899999999985999232212000--011223211-2-68888899899999859999999

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=85.08  E-value=1.1  Score=21.56  Aligned_cols=61  Identities=10%  Similarity=0.188  Sum_probs=40.0

Q ss_pred             CCCEEE-EEEECCCCCCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE--EECCEEE
Q ss_conf             982899-9900589989994799999999668------994899988999999999999969986211289--9899897
Q 027825           69 SDGVVI-YTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV  139 (218)
Q Consensus        69 ~~kVvI-Yttsl~giR~tc~~C~~vr~lL~~~------gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI--FI~G~~I  139 (218)
                      ...|+| |+++      +|+.|..+...+...      .+.+..+|++.+..    +.+.. + ..++|.+  |.+|+.+
T Consensus        17 ~~~vlv~F~a~------wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~----l~~~~-~-V~~~Pt~~~~~~G~~v   84 (104)
T d1fb6a_          17 EVPVMVDFWAP------WCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG----IATQY-N-IRSIPTVLFFKNGERK   84 (104)
T ss_dssp             SSCEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHT-T-CCSSSEEEEEETTEEE
T ss_pred             CCCEEEEEECC------CCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHH----HHHHC-C-EEEEEEEEEEECCEEE
T ss_conf             99399999868------64776535833688877603765305895145554----55414-6-5254578999757489


Q ss_pred             EC
Q ss_conf             11
Q 027825          140 GG  141 (218)
Q Consensus       140 GG  141 (218)
                      +-
T Consensus        85 ~~   86 (104)
T d1fb6a_          85 ES   86 (104)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             99

>d1duga2 c.47.1.5 (A:1-80) Class alpha GST {Schistosoma japonicum [TaxId: 6182]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Schistosoma japonicum [TaxId: 6182]

Probab=84.88  E-value=0.94  Score=21.94  Aligned_cols=71  Identities=13%  Similarity=-0.048  Sum_probs=44.9

Q ss_pred             CEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHHCCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf             2899990058998999479999999966899489998899999-99999999699862112899899897113045768
Q 027825           71 GVVIYTTSLRGVRRTYEDCNRVRSTFEVNRVVTDERDVSLHGQ-FLNELKDLLGGETVTVPRVFIKGRYVGGVDELTEL  148 (218)
Q Consensus        71 kVvIYttsl~giR~tc~~C~~vr~lL~~~gV~~eerDVs~d~~-~r~EL~~~~~g~~~tvPqIFI~G~~IGG~dei~~l  148 (218)
                      ++..|. +.      -..++.+|.+|...+++|+++.++.... .....+.........+|.+..+|..|.....+.+.
T Consensus         2 P~L~Y~-~~------rgrae~vRl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~p~~~lP~l~d~g~~l~qS~AI~ry   73 (80)
T d1duga2           2 PILGYW-KI------KGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRY   73 (80)
T ss_dssp             CEEEEE-SS------SGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHH
T ss_pred             CEEEEC-CC------CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCEECCCCEEEHHHHHHHHH
T ss_conf             989982-88------4444999999997499846778862631111455652359976522100087444349999999

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=84.49  E-value=1.2  Score=21.40  Aligned_cols=60  Identities=8%  Similarity=0.267  Sum_probs=38.3

Q ss_pred             CCCEEE-EEEECCCCCCCCHHHHHHHHHHHHC------CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEE--EECCEEE
Q ss_conf             982899-9900589989994799999999668------994899988999999999999969986211289--9899897
Q 027825           69 SDGVVI-YTTSLRGVRRTYEDCNRVRSTFEVN------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRV--FIKGRYV  139 (218)
Q Consensus        69 ~~kVvI-Yttsl~giR~tc~~C~~vr~lL~~~------gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqI--FI~G~~I  139 (218)
                      ...|+| |+++      +|+.|+.+...+...      .+.+..+|++.+..    +.... + ...+|.+  |.+|+.+
T Consensus        20 ~~~v~v~F~a~------wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~----l~~~~-~-v~~~PT~~~~~~G~~v   87 (108)
T d2trxa_          20 DGAILVDFWAE------WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKY-G-IRGIPTLLLFKNGEVA   87 (108)
T ss_dssp             SSEEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT----HHHHT-T-CCSSSEEEEEETTEEE
T ss_pred             CCCEEEEEECC------CCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCHHH----HHHHH-C-CCCEEEEEEEECCEEE
T ss_conf             99499999789------88775334807999999841226665135632154----79883-8-8717799998899797


Q ss_pred             E
Q ss_conf             1
Q 027825          140 G  140 (218)
Q Consensus       140 G  140 (218)
                      .
T Consensus        88 ~   88 (108)
T d2trxa_          88 A   88 (108)
T ss_dssp             E
T ss_pred             E
T ss_conf             8

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=84.12  E-value=0.97  Score=21.85  Aligned_cols=37  Identities=16%  Similarity=0.301  Sum_probs=22.9

Q ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHH----H-----HCCCCEEEEECCC
Q ss_conf             99828999900589989994799999999----6-----6899489998899
Q 027825           68 GSDGVVIYTTSLRGVRRTYEDCNRVRSTF----E-----VNRVVTDERDVSL  110 (218)
Q Consensus        68 ~~~kVvIYttsl~giR~tc~~C~~vr~lL----~-----~~gV~~eerDVs~  110 (218)
                      +...||-|+ ++     +||+|.+.-..|    +     ...+.|..+.+..
T Consensus        18 ~~~~VvEff-dy-----~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   63 (188)
T d1fvka_          18 GAPQVLEFF-SF-----FCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNF   63 (188)
T ss_dssp             TCCSEEEEE-CT-----TCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECSS
T ss_pred             CCCEEEEEE-CC-----CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             997799997-78-----88504889788778888764157751799995476

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.78  E-value=1.2  Score=21.22  Aligned_cols=56  Identities=9%  Similarity=0.093  Sum_probs=38.5

Q ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHC-------CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEE--CCE
Q ss_conf             828999900589989994799999999668-------99489998899999999999996998621128998--998
Q 027825           70 DGVVIYTTSLRGVRRTYEDCNRVRSTFEVN-------RVVTDERDVSLHGQFLNELKDLLGGETVTVPRVFI--KGR  137 (218)
Q Consensus        70 ~kVvIYttsl~giR~tc~~C~~vr~lL~~~-------gV~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIFI--~G~  137 (218)
                      .-+|.|+++      +|+.|+++...++..       .|.+-.+|++.+.    ++.... + ..++|.+++  +|+
T Consensus        29 ~~lV~fya~------wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~----~l~~~~-~-v~~~Pti~~f~~g~   93 (119)
T d2b5ea4          29 LVLAEFFAP------WCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ----DLCMEH-N-IPGFPSLKIFKNSD   93 (119)
T ss_dssp             EEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH----HHHHHT-T-CCSSSEEEEEETTC
T ss_pred             EEEEEEECC------CCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHH----HHHHHH-C-CCCCCEEEEEECCE
T ss_conf             499999778------66764322134433222221211046653022448----888875-3-45698699999998

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.69  E-value=1.4  Score=20.96  Aligned_cols=59  Identities=17%  Similarity=0.166  Sum_probs=37.7

Q ss_pred             CEEE-EEEECCCCCCCCHHHHHHHHHHHHC----C--CCEEEEECCCCHHHHHHHHHHHCCCCCCCCEEE--ECCEEEEC
Q ss_conf             2899-9900589989994799999999668----9--948999889999999999999699862112899--89989711
Q 027825           71 GVVI-YTTSLRGVRRTYEDCNRVRSTFEVN----R--VVTDERDVSLHGQFLNELKDLLGGETVTVPRVF--IKGRYVGG  141 (218)
Q Consensus        71 kVvI-Yttsl~giR~tc~~C~~vr~lL~~~----g--V~~eerDVs~d~~~r~EL~~~~~g~~~tvPqIF--I~G~~IGG  141 (218)
                      .|+| |+++      +|+.|+.....++..    .  +.+..+|++.+..    +.+.. + ...+|.++  -+|+.+..
T Consensus        27 ~vlv~f~a~------wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~----l~~~~-~-V~~~Pt~~~~~~G~~v~~   94 (111)
T d1xwaa_          27 LVVLDFFAT------WCGPCKMISPKLVELSTQFADNVVVLKVDVDECED----IAMEY-N-ISSMPTFVFLKNGVKVEE   94 (111)
T ss_dssp             EEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHT-T-CCSSSEEEEEETTEEEEE
T ss_pred             EEEEEEECC------CCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCC----HHHCC-C-CCCCCEEEEEECCEEEEE
T ss_conf             899999978------65685000145798864115524799998503701----22217-7-753508999989979999

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=80.57  E-value=1.6  Score=20.50  Aligned_cols=20  Identities=25%  Similarity=0.424  Sum_probs=15.2

Q ss_pred             CCCCCEEEECCEEEECCHHH
Q ss_conf             62112899899897113045
Q 027825          126 TVTVPRVFIKGRYVGGVDEL  145 (218)
Q Consensus       126 ~~tvPqIFI~G~~IGG~dei  145 (218)
                      ...+|.+||+|+|+.+....
T Consensus       145 i~gTPt~~InGk~~v~~~~~  164 (181)
T d1beda_         145 LTGVPAVVVNNRYLVQGQSV  164 (181)
T ss_dssp             CCSSSEEEETTTEEECGGGC
T ss_pred             CCCCCEEEECCEEEECCCCC
T ss_conf             86166899999996078777